Type	Tissue	Mutation	HLA	Peptide	Deep_bind	Deep_imm	MHCf_rank (%)	Net4_aff (nM)	Net4_rank (%)	TPM	Frequency in the tissue	Frequency in all samples
SNV	Breast	CD248_E678K_9	HLA-A03:01	ALGEAGLAK	0.9972	0.8575	0.2023	7.97	0.0803	32.75	1/982	1/7748
SNV	Breast	CLIP2_A576V_1	HLA-B50:01	VEVDKLRAA	0.5169	0.6548	0.0187	2.58	0.0157	16.94	1/982	1/7748
SNV	Breast	MAN1B1_G536D_8	HLA-B35:08	LPGTLALDVY	0.9855	0.7256	0.2357	315.8	0.2739	62	1/982	1/7748
SNV	Breast	ZEB2_S890N_4	HLA-B35:08	NPFNAKPLY	0.9974	0.5789	0.0359	3.17	0.0282	3.35	1/982	1/7748
SNV	Breast	A2M_E753K_9	HLA-A30:01	VVNSAGVAK	0.9567	0.954	0.2293	137.25	0.0694	195.78	1/982	1/7748
SNV	Breast	ACAT1_K302N_7	HLA-A68:02	MTADAANRL	0.9893	0.6476	0.1426	3.7	0.0204	25	1/982	1/7748
SNV	Breast	ACAT1_K302N_7	HLA-A68:02	MTADAANRLNV	0.9964	0.8028	1.4575	314.42	0.3869	25	1/982	1/7748
SNV	Breast	ACAT1_K302N_7	HLA-C16:01	MTADAANRL	0.8421	0.9736	0.2915	26.05	0.1951	25	1/982	1/7748
SNV	Breast	ACAT1_K302N_7	HLA-C05:01	MTADAANRL	0.9986	0.9477	0.5234	33.74	0.1474	25	1/982	1/7748
SNV	Breast	ADAT2_M117I_7	HLA-C16:01	AAALRLIKI	0.9482	0.9803	0.5473	261.66	0.6536	1.58	1/982	1/7748
SNV	Breast	ADAT2_M117I_3	HLA-C16:01	RLIKIPLVV	0.5492	0.9861	1.9878	228.44	0.614	1.58	1/982	1/7748
SNV	Breast	ADNP_H535Y_8	HLA-C16:01	AAHMRMVYI	0.8706	0.9795	0.678	100.19	0.4256	94.94	1/982	1/7748
SNV	Breast	AHCTF1_R2259T_8	HLA-A30:01	GTGLGRNTK	0.9633	0.9175	0.5992	485.54	0.1727	17.21	1/982	1/7748
SNV	Breast	AKAP12_E605K_1	HLA-C16:01	KGVTPWASF	0.7862	0.9919	1.346	296.41	0.6899	6.23	1/982	1/7748
SNV	Breast	ANKRD26_E1070K_3	HLA-A30:01	KTKSKLNSL	0.9962	0.788	0.021	24.31	0.0138	1.97	1/982	1/7748
SNV	Breast	ANKRD26_E1070K_1	HLA-A30:01	KSKLNSLEI	0.9891	0.9464	0.3196	413.6	0.1551	1.97	1/982	1/7748
SNV	Breast	ANKRD26_E1070K_3	HLA-C16:01	KTKSKLNSL	0.9428	0.9729	0.3891	45.32	0.2752	1.97	1/982	1/7748
SNV	Breast	ANKRD36_E569K_8	HLA-C16:01	SVSNIATKI	0.8337	0.9693	1.6854	387.12	0.7659	2.09	1/982	1/7748
SNV	Breast	ANO8_E324K_3	HLA-A30:01	AVKEPRPQF	0.6049	0.7934	0.8905	178.33	0.0822	24.23	1/982	1/7748
SNV	Breast	ANO8_E324K_3	HLA-C16:01	AVKEPRPQF	0.6152	0.94	0.1548	68.62	0.3483	24.23	1/982	1/7748
SNV	Breast	AOX1_R290T_2	HLA-A68:02	DTIEELSVV	0.9989	0.7512	0.0887	7.55	0.0386	1.39	1/982	1/7748
SNV	Breast	AOX1_R290T_5	HLA-C16:01	ISPDTIEEL	0.9454	0.9801	0.2306	351.42	0.7385	1.39	1/982	1/7748
SNV	Breast	AOX1_R290T_5	HLA-C05:01	ISPDTIEEL	0.9975	0.9432	0.0587	457.61	0.3922	1.39	1/982	1/7748
SNV	Breast	APMAP_I388M_6	HLA-A68:02	LVATYMSEV	0.9937	0.6614	0.0904	72.85	0.1938	625.66	1/982	1/7748
SNV	Breast	ARAP1_E472Q_1	HLA-B18:01	QEYHLGIGI	0.8245	0.6638	0.1407	389.9	0.2441	45.26	1/982	1/7748
SNV	Breast	ARAP1_E472Q_1	HLA-B18:01	QEYHLGIGITF	0.9989	0.7448	0.1235	44.96	0.1147	45.26	1/982	1/7748
SNV	Breast	ASPG_S364L_1	HLA-C16:01	LVEERRPSL	0.964	0.9863	0.7219	144.18	0.5008	1.57	1/982	1/7748
SNV	Breast	ATXN1_S368L_9	HLA-C16:01	HVVVHPSPL	0.8714	0.985	0.4145	156.74	0.5209	11.67	1/982	1/7748
SNV	Breast	BACH2_E80Q_7	HLA-A68:02	LVVSLPQEV	0.9913	0.7941	0.2169	461.37	0.4552	1.47	1/982	1/7748
SNV	Breast	BTF3_R72T_2	HLA-A30:01	RTKKKVVHR	0.9971	0.7126	0.0154	197.74	0.0881	330.99	1/982	1/7748
SNV	Breast	C2orf16_L834I_5	HLA-C05:01	QMEEIENSL	0.9998	0.8697	0.2238	495.13	0.4029	1.97	1/982	1/7748
SNV	Breast	CEP72_Q586H_7	HLA-C16:01	KIQELTHML	0.9781	0.9867	0.7121	30.76	0.2178	7.15	1/982	1/7748
SNV	Breast	CEP72_Q586H_7	HLA-C05:01	KIQELTHML	0.9982	0.9728	0.3829	237.02	0.309	7.15	1/982	1/7748
SNV	Breast	CLTC_E1465K_4	HLA-C16:01	SVNKSLNNL	0.9052	0.9893	1.0786	38.9	0.2539	413.95	1/982	1/7748
SNV	Breast	CLU_S400F_4	HLA-A68:02	DVPFGVTEV	0.9931	0.6698	0.3001	13.96	0.0667	597.74	1/982	1/7748
SNV	Breast	CLU_S400F_4	HLA-A68:02	DVPFGVTEVV	0.9618	0.5683	0.5519	167.35	0.2896	597.74	1/982	1/7748
SNV	Breast	CRNKL1_S138L_8	HLA-C05:01	FSESFVVLV	0.9999	0.9488	0.1294	81.72	0.2045	64.12	1/982	1/7748
SNV	Breast	CTCF_E687K_8	HLA-C05:01	AIENIIVKV	0.9998	0.9641	0.3829	399.61	0.3751	58.13	1/982	1/7748
SNV	Breast	CTNND1_E803K_9	HLA-A30:01	KLRETQGIK	0.9957	0.8212	0.0411	153.38	0.0748	133.83	1/982	1/7748
SNV	Breast	CXorf38_S175C_7	HLA-B18:01	SEMKVSCTW	0.9671	0.8779	0.0624	72.96	0.1359	21.01	1/982	1/7748
SNV	Breast	CYTIP_R333T_8	HLA-A30:01	GTLPRKSTK	0.9916	0.8401	0.0508	61.9	0.0306	58.69	1/982	1/7748
SNV	Breast	DAAM2_E199K_9	HLA-A30:01	RAHVLAQPK	0.9984	0.9189	0.0018	324.67	0.1235	6	1/982	1/7748
SNV	Breast	DAAM2_E199K_7	HLA-C16:01	HVLAQPKAI	0.577	0.9781	1.4669	378.1	0.7592	6	1/982	1/7748
SNV	Breast	DACH1_D665N_4	HLA-C16:01	ASTNSLRVL	0.9395	0.985	0.6254	177.17	0.5504	29.47	1/982	1/7748
SNV	Breast	DHX40_H176N_6	HLA-C05:01	ILDEANERTL	1	0.9529	0.0311	8.04	0.0771	72.65	1/982	1/7748
SNV	Breast	DPEP1_G386R_9	HLA-A30:01	RTHYGYSSR	0.9973	0.8185	0.0154	325.3	0.1236	1.5	1/982	1/7748
SNV	Breast	DUSP19_S62L_7	HLA-C16:01	YVQDLSLDL	0.9092	0.9592	0.4056	71.93	0.3579	2.57	1/982	1/7748
SNV	Breast	DUSP19_S62L_7	HLA-C05:01	YVQDLSLDL	0.9957	0.9224	0.1799	18.82	0.1204	2.57	1/982	1/7748
SNV	Breast	DUSP19_S62L_2	HLA-C05:01	SLDLQVGVI	0.9997	0.9246	0.0649	62.54	0.1852	2.57	1/982	1/7748
SNV	Breast	DYNC1H1_E1786K_8	HLA-A68:02	HSVLSNVKV	0.9809	0.5539	0.1841	400.68	0.4292	111.57	1/982	1/7748
SNV	Breast	DYNC1H1_E1786K_6	HLA-C16:01	VLSNVKVTL	0.9861	0.9773	0.9879	59.31	0.3186	111.57	1/982	1/7748
SNV	Breast	DYNC1H1_K4418N_8	HLA-C16:01	RFFEREVNM	0.9913	0.9677	1.8148	117.77	0.459	111.57	1/982	1/7748
SNV	Breast	EFHC1_P13S_5	HLA-C16:01	LPFLSGTSF	0.5189	0.992	1.3165	163.7	0.5314	9.2	1/982	1/7748
SNV	Breast	EIF4A3_R14Q_4	HLA-A30:01	GSAQKRLLK	0.9909	0.7486	0.111	341.32	0.129	58.06	1/982	1/7748
SNV	Breast	ELP5_C61Y_9	HLA-B18:01	GEQVHILGY	0.9733	0.5309	0.0666	34.01	0.1035	33.04	1/982	1/7748
SNV	Breast	EPS15_S311L_6	HLA-A68:02	EMIPPLDRA	0.9628	0.8984	0.8481	339.58	0.399	24.36	1/982	1/7748
SNV	Breast	FAM120A_S398C_2	HLA-C05:01	LCEPAPLTL	0.9999	0.9868	0.1211	335.31	0.3529	105.36	1/982	1/7748
SNV	Breast	FAM120A_S398C_3	HLA-C05:01	SLCEPAPLTL	0.9998	0.9732	0.1799	283.66	0.3317	105.36	1/982	1/7748
SNV	Breast	FAM171B_D142Y_5	HLA-B52:01	IAYKYGYVL	0.9853	0.7429	0.1714	97.14	0.0156	2.61	1/982	1/7748
SNV	Breast	FAM171B_D142Y_5	HLA-C16:01	IAYKYGYVL	0.9704	0.9672	0.03	1.8	0.0087	2.61	1/982	1/7748
SNV	Breast	FBXW7_E177Q_1	HLA-A30:01	QVRSFSLGK	0.9955	0.703	0.0289	64.53	0.0319	8.12	1/982	1/7748
SNV	Breast	FBXW7_E177Q_3	HLA-C16:01	GSQVRSFSL	0.9354	0.9861	1.0388	397.84	0.7736	8.12	1/982	1/7748
SNV	Breast	FGD2_S493F_3	HLA-C16:01	RCFDYRAEL	0.9649	0.9789	0.8582	116.07	0.456	3.19	1/982	1/7748
SNV	Breast	FHAD1_E940K_9	HLA-A30:01	HAQTIVSLK	0.9885	0.6809	0.2461	494.57	0.1748	1.24	1/982	1/7748
SNV	Breast	FLNC_S2448L_6	HLA-A30:01	RVHTPLGAV	0.9949	0.977	0.0775	360.75	0.137	2.97	1/982	1/7748
SNV	Breast	FLNC_S2448L_6	HLA-C16:01	RVHTPLGAV	0.7891	0.993	0.9635	237.3	0.6251	2.97	1/982	1/7748
SNV	Breast	FTO_G187R_5	HLA-C16:01	SSYNRQDEV	0.9444	0.9559	0.9265	240.45	0.6289	10.71	1/982	2/7748
SNV	Breast	FZD2_E122K_1	HLA-C16:01	KALMNKFGF	0.7266	0.9364	1.6359	172.73	0.5443	26.08	1/982	1/7748
SNV	Breast	GINS4_R131K_7	HLA-B18:01	EELAFAKEF	0.999	0.8992	0.0231	1.39	0.0038	5.2	1/982	1/7748
SNV	Breast	GINS4_R131K_1	HLA-B18:01	KEFMANTESY	0.9711	0.9057	0.1059	300.24	0.2261	5.2	1/982	1/7748
SNV	Breast	GON4L_E585K_9	HLA-A30:01	RAVRITKKK	0.9925	0.8606	0.1039	364.3	0.1384	14.68	1/982	1/7748
SNV	Breast	GON4L_E585K_5	HLA-C16:01	ITKKKVNEL	0.8235	0.9803	0.1765	48.14	0.2837	14.68	1/982	1/7748
SNV	Breast	GON4L_E585K_1	HLA-C16:01	KVNELMEEL	0.9973	0.9874	0.5473	11.95	0.1149	14.68	1/982	1/7748
SNV	Breast	GON4L_E585K_1	HLA-C05:01	KVNELMEEL	0.9996	0.9749	0.5429	257.11	0.3193	14.68	1/982	1/7748
SNV	Breast	GPR143_S388F_9	HLA-B18:01	IEIHTASEF	0.9979	0.8811	0.0101	3.4	0.0228	6.7	1/982	1/7748
SNV	Breast	HIST1H2BC_E72Q_7	HLA-A68:02	FVNDIFQRI	0.9959	0.519	0.0124	4.61	0.0266	171.29	1/982	1/7748
SNV	Breast	HIST1H2BC_E72Q_7	HLA-C16:01	FVNDIFQRI	0.976	0.9627	0.667	45.86	0.2769	171.29	1/982	1/7748
SNV	Breast	HIST1H2BC_E72Q_7	HLA-C05:01	FVNDIFQRI	0.9994	0.9634	0.3829	5.69	0.063	171.29	2/982	2/7748
SNV	Breast	HIST1H2BH_D69N_4	HLA-A68:02	FVNNIFERI	0.9963	0.5907	0.0751	18.82	0.0807	44.36	1/982	1/7748
SNV	Breast	HIST1H2BH_D69N_4	HLA-C05:01	FVNNIFERI	0.9985	0.9644	1.3005	128.64	0.2414	44.36	1/982	1/7748
SNV	Breast	HIST1H3B_E106Q_2	HLA-C05:01	FQDTNLCAI	0.9995	0.9702	0.1211	198.6	0.2879	14.61	1/982	2/7748
SNV	Breast	HSPBAP1_E423Q_7	HLA-C16:01	FVDKDGQHF	0.9581	0.8855	0.0756	295.2	0.6887	3.79	1/982	1/7748
SNV	Breast	HSPBAP1_E423Q_7	HLA-C05:01	FVDKDGQHF	0.9998	0.756	0.017	2.57	0.0345	3.79	1/982	1/7748
SNV	Breast	HUWE1_S3122F_6	HLA-C16:01	STSALFAIL	0.9713	0.9805	0.4985	267.59	0.6601	105.07	1/982	1/7748
SNV	Breast	HUWE1_S3122F_1	HLA-C16:01	FAILRSPAF	0.9159	0.9727	0.0179	3.22	0.026	105.07	1/982	1/7748
SNV	Breast	ILDR1_G177E_8	HLA-A68:02	TVIFIILEA	0.9961	0.5079	0.1709	76.1	0.1986	28.82	1/982	1/7748
SNV	Breast	ILDR1_G177E_4	HLA-C16:01	IILEALLLL	0.9323	0.9601	1.2036	278.21	0.6714	28.82	1/982	1/7748
SNV	Breast	ILDR1_G177E_3	HLA-C05:01	ILEALLLLL	0.9995	0.9913	0.311	141.07	0.2489	28.82	1/982	1/7748
SNV	Breast	INTS6_S494L_8	HLA-A30:01	RSRSHGLLM	0.9809	0.9534	0.0425	9.45	0.0081	2.48	1/982	1/7748
SNV	Breast	INTS6_S494L_6	HLA-A30:01	RSHGLLMAY	0.9788	0.9754	0.0909	85.46	0.0407	2.48	1/982	1/7748
SNV	Breast	INTS6_S494L_8	HLA-C16:01	RSRSHGLLM	0.659	0.9824	0.1285	21.94	0.1789	2.48	1/982	1/7748
SNV	Breast	INTS6_S494L_6	HLA-C16:01	RSHGLLMAY	0.6109	0.9851	0.0165	49.69	0.2881	2.48	1/982	1/7748
SNV	Breast	KDM5B_K126N_4	HLA-B18:01	VERNILDLF	0.98	0.888	0.1273	26.03	0.0924	29.34	1/982	1/7748
SNV	Breast	KDM6A_W1096C_7	HLA-C05:01	LSDDKKCKL	0.9996	0.8614	0.0064	191.14	0.2835	21.49	1/982	1/7748
SNV	Breast	KIAA1522_S661F_9	HLA-C16:01	TTLTPLQEF	0.8219	0.9892	0.21	189.94	0.5671	111.52	1/982	1/7748
SNV	Breast	KIF11_E831K_9	HLA-A30:01	NTRTVYFSK	0.9933	0.7103	0.0125	162.25	0.0774	32.68	1/982	1/7748
SNV	Breast	KIF11_E831K_3	HLA-C16:01	FSKQWVSSL	0.9817	0.9776	0.0071	11.32	0.11	32.68	1/982	1/7748
SNV	Breast	KIF1A_E803Q_8	HLA-A30:01	ATHYWTLQK	0.9961	0.8161	0.0176	216.91	0.0952	3.29	1/982	1/7748
SNV	Breast	KLHL17_D402H_8	HLA-C16:01	GGYDGTSHL	0.804	0.987	0.6358	77.33	0.3726	9.3	1/982	1/7748
SNV	Breast	LRBA_L2666V_7	HLA-A30:01	GSRDATVLL	0.9205	0.779	0.2284	326.47	0.1239	26.93	1/982	1/7748
SNV	Breast	LRBA_L2666V_7	HLA-C16:01	GSRDATVLL	0.7541	0.9677	0.5381	55.18	0.3039	26.93	1/982	1/7748
SNV	Breast	MAP3K10_E481Q_4	HLA-C16:01	SGFQHKITV	0.9067	0.9786	0.5171	26.2	0.1956	21.01	1/982	1/7748
SNV	Breast	METTL21B_E211K_4	HLA-B18:01	DEDKNVNIY	0.9947	0.8354	0.0661	3.14	0.0201	12.48	1/982	1/7748
SNV	Breast	METTL6_L262F_3	HLA-A30:01	VFFQSKFLK	0.9761	0.8305	0.1414	455.79	0.1658	10.21	1/982	1/7748
SNV	Breast	METTL6_L262F_4	HLA-C16:01	RVFFQSKFL	0.9128	0.9821	1.7015	60.09	0.3213	10.21	1/982	1/7748
SNV	Breast	MICALL2_L96F_9	HLA-C16:01	KVPDRLSIF	0.9051	0.9384	0.3505	51.51	0.2931	33.37	1/982	1/7748
SNV	Breast	MNS1_R376K_6	HLA-B18:01	EEENFKKTM	0.9895	0.8574	0.1407	85.93	0.1438	4.45	1/982	1/7748
SNV	Breast	MRM1_E93K_9	HLA-A30:01	RAELLRMAK	0.9754	0.8298	0.2431	445.73	0.1633	32.34	1/982	1/7748
SNV	Breast	MRM1_E93K_1	HLA-A30:01	KARDIPVLR	0.9972	0.8935	0.0326	31.7	0.0167	32.34	1/982	1/7748
SNV	Breast	MRM1_E93K_1	HLA-C16:01	KARDIPVL	0.9855	0.9423	0.5473	174	0.546	32.34	1/982	1/7748
SNV	Breast	MYO18A_I840M_4	HLA-B18:01	EENMELAF	0.9987	0.8621	0.1321	34.36	0.1039	52.52	1/982	1/7748
SNV	Breast	MYO18A_I840M_5	HLA-B18:01	KEENMELAF	0.91	0.9638	0.1059	117.57	0.1652	52.52	1/982	1/7748
SNV	Breast	MYZAP_R424T_5	HLA-A68:02	EVETTEIGV	0.9805	0.5086	1.2477	187.2	0.3054	1.81	1/982	1/7748
SNV	Breast	NEXN_E421Q_5	HLA-B18:01	EEEEQNETF	0.9686	0.9394	0.0666	19.05	0.0812	5.92	1/982	1/7748
SNV	Breast	NIP7_D157H_3	HLA-A30:01	KVHPMAIVV	0.995	0.7925	0.1571	210.39	0.0925	19.6	1/982	1/7748
SNV	Breast	NIP7_D157H_3	HLA-C16:01	KVHPMAIVV	0.9432	0.9494	0.3006	8.17	0.0826	19.6	1/982	1/7748
SNV	Breast	PALB2_L381V_7	HLA-C16:01	LSQPKSVSL	0.9967	0.972	0.0377	3.49	0.0306	13.83	1/982	1/7748
SNV	Breast	PALB2_L381V_1	HLA-C16:01	VSLEATSPL	0.9136	0.9861	0.049	17.18	0.1548	13.83	1/982	1/7748
SNV	Breast	PCDHB14_E434Q_3	HLA-C16:01	KTQYNITVL	0.9423	0.9667	0.3975	8.21	0.0832	2.19	1/982	1/7748
SNV	Breast	POLQ_E690K_9	HLA-A30:01	RVAELVGVK	0.9977	0.9315	0.0436	111.68	0.0558	10.27	1/982	1/7748
SNV	Breast	POMGNT1_A438V_5	HLA-B18:01	AEDPVLLY	0.983	0.9184	0.2004	153.8	0.1835	31.66	1/982	1/7748
SNV	Breast	POMGNT1_A438V_7	HLA-C16:01	HTAEDPVLL	0.9165	0.9768	0.2496	90.11	0.4038	31.66	1/982	1/7748
SNV	Breast	POMGNT1_A438V_7	HLA-C05:01	HTAEDPVLL	0.9997	0.9207	0.2896	29.16	0.1406	31.66	1/982	1/7748
SNV	Breast	POMGNT1_A438V_6	HLA-C05:01	TAEDPVLLY	0.9895	0.8807	0.4176	448.08	0.3895	31.66	1/982	1/7748
SNV	Breast	PPP2R3A_A703V_5	HLA-C16:01	NVVNVPLSI	0.7938	0.975	1.4374	218.59	0.6011	12.96	1/982	1/7748
SNV	Breast	PROCR_I67M_6	HLA-A68:02	DTNTTMIQL	0.9898	0.5279	0.467	76.42	0.1991	15.02	1/982	1/7748
SNV	Breast	PROCR_I67M_3	HLA-C16:01	TTMIQLQPL	0.9204	0.9891	0.6358	263.42	0.6555	15.02	1/982	1/7748
SNV	Breast	PSME4_E93Q_4	HLA-C16:01	FSKQDHVLF	0.8091	0.9087	0.1001	165.34	0.5337	49.26	1/982	1/7748
SNV	Breast	PTDSS2_F410L_9	HLA-C16:01	HTLTLSLPL	0.904	0.9811	0.2838	346.17	0.7342	15.12	1/982	1/7748
SNV	Breast	REPS2_R490T_5	HLA-A30:01	KTHSTASSL	0.9801	0.8641	0.0436	125.77	0.0639	10.52	1/982	1/7748
SNV	Breast	REPS2_R490T_5	HLA-C16:01	KTHSTASSL	0.9728	0.9781	0.03	10.36	0.1021	10.52	1/982	1/7748
SNV	Breast	RPRD2_T148S_2	HLA-C16:01	TSFKTQKQL	0.6818	0.9562	0.1633	288.43	0.682	24.87	1/982	1/7748
SNV	Breast	SF3A2_G335A_1	HLA-A68:02	AVHPPAPGV	0.9831	0.6739	0.4301	60.5	0.1732	124.81	1/982	1/7748
SNV	Breast	SF3A2_G335A_8	HLA-C16:01	GVHPPAPAV	0.8778	0.9876	0.5676	68.1	0.3467	124.81	1/982	1/7748
SNV	Breast	SF3A2_G335A_1	HLA-C16:01	AVHPPAPGV	0.8572	0.9899	0.8221	276.81	0.67	124.81	1/982	1/7748
SNV	Breast	SF3A3_R87T_9	HLA-B18:01	NEFAEFYNTL	0.9773	0.9167	0.3461	217.5	0.204	38.46	1/982	1/7748
SNV	Breast	SH3D19_E594K_3	HLA-C16:01	FSKGEIIIL	0.8983	0.9481	0.21	56.91	0.3102	12.67	1/982	1/7748
SNV	Breast	SLC6A6_L608F_3	HLA-B52:01	GAFVKPTHI	0.9528	0.9523	0.3756	404.83	0.0529	37.95	1/982	1/7748
SNV	Breast	SLC6A6_L608F_3	HLA-C16:01	GAFVKPTHI	0.6989	0.9634	0.2838	133.99	0.4856	37.95	1/982	1/7748
SNV	Breast	SLC6A6_L608F_1	HLA-C16:01	FVKPTHIIV	0.606	0.9135	0.5473	136.11	0.4888	37.95	1/982	1/7748
SNV	Breast	SNX11_R67T_9	HLA-A30:01	RYREFVWLTK	0.9903	0.9483	1.6193	159.88	0.0767	105.48	1/982	1/7748
SNV	Breast	SNX24_E11K_9	HLA-A30:01	VYIPSFRYK	0.9197	0.7445	0.3715	184.42	0.0841	5.75	1/982	1/7748
SNV	Breast	SNX24_E11K_1	HLA-B18:01	KESDLERGY	0.9806	0.7537	0.1075	252.39	0.2142	5.75	1/982	1/7748
SNV	Breast	SNX2_S147L_9	HLA-C05:01	IFDIEIGVL	0.9993	0.9238	0.2274	166.26	0.2674	37.07	1/982	1/7748
SNV	Breast	SPEF2_F1561L_6	HLA-A68:02	ETLQKLKAV	0.9982	0.691	0.39	320.82	0.39	1.73	1/982	1/7748
SNV	Breast	SPG11_I1146M_9	HLA-C16:01	SVLPSDITM	0.9112	0.9662	0.3205	7.29	0.073	25.73	1/982	1/7748
SNV	Breast	SPG11_I1146M_2	HLA-C16:01	TMYHLIQSL	0.9809	0.9686	0.4516	37.47	0.2485	25.73	1/982	1/7748
SNV	Breast	STARD7_R232W_5	HLA-A68:02	YVYVWRYSV	0.981	0.5133	0.1735	137.91	0.2636	132.28	1/982	1/7748
SNV	Breast	TOP2A_E1380K_1	HLA-C05:01	KADDVKGSV	0.9998	0.7708	0.012	7.52	0.0747	61.09	1/982	1/7748
SNV	Breast	TOR1AIP1_L307V_8	HLA-A30:01	RMQNDSIVK	0.9589	0.7261	0.0543	374.8	0.1425	22.89	1/982	1/7748
SNV	Breast	TPCN1_S259L_2	HLA-C05:01	PLDPYFSTL	0.9999	0.8464	0.0711	13.11	0.1035	33.05	1/982	1/7748
SNV	Breast	TRAF3IP3_D496Y_8	HLA-B18:01	SELDNLSY	0.9964	0.9234	0.0689	10.23	0.0631	4.96	1/982	1/7748
SNV	Breast	TRAF3IP3_D496Y_8	HLA-B18:01	SELDNLSYEY	0.9565	0.9094	0.0351	5.87	0.0403	4.96	1/982	1/7748
SNV	Breast	TRAF6_S129F_8	HLA-C16:01	FAKREILFL	0.9245	0.9769	0.0891	96.01	0.4169	6.8	1/982	1/7748
SNV	Breast	TRIM65_E156K_5	HLA-C16:01	ATQAKGQLL	0.6945	0.9798	0.3132	420.79	0.7895	36.73	1/982	1/7748
SNV	Breast	TRIM65_E156K_3	HLA-C16:01	QAKGQLLEL	0.9017	0.9611	0.1548	66.31	0.3413	36.73	1/982	1/7748
SNV	Breast	TRRAP_R3690K_1	HLA-C05:01	KLNPEMLQI	0.9952	0.9353	0.6025	37.49	0.1529	26.95	1/982	1/7748
SNV	Breast	UBAC2_L126F_9	HLA-C16:01	FGITAASNF	0.6594	0.9824	0.8789	192.77	0.5707	51.43	1/982	1/7748
SNV	Breast	UBAC2_L126F_5	HLA-C16:01	AASNFPSGF	0.6631	0.9871	0.0891	49.97	0.2888	51.43	1/982	1/7748
SNV	Breast	UTRN_R2739T_1	HLA-B18:01	TEEIAPINF	0.9924	0.9444	0.1075	14.8	0.073	54.36	1/982	1/7748
SNV	Breast	VPS4A_L314V_1	HLA-C16:01	VTDANIHEL	0.9774	0.9825	0.1095	17.65	0.1575	49.71	1/982	1/7748
SNV	Breast	VPS4A_L314V_1	HLA-C05:01	VTDANIHEL	1	0.9687	0.0013	1.23	0.0079	49.71	1/982	1/7748
SNV	Breast	XPC_E296K_3	HLA-B18:01	DDKELVHIF	0.9863	0.7654	0.2004	56.92	0.1241	42.83	1/982	1/7748
SNV	Breast	XPOT_R569T_8	HLA-A68:02	FIEDILNTI	0.8337	0.5498	0.5493	166.34	0.2888	43.46	1/982	1/7748
SNV	Breast	XPOT_R569T_2	HLA-A68:02	NTIQDLLEL	0.9937	0.6463	0.4865	74.08	0.1957	43.46	1/982	1/7748
SNV	Breast	XPOT_R569T_8	HLA-C16:01	FIEDILNTI	0.7981	0.9668	0.6071	405.8	0.7792	43.46	1/982	1/7748
SNV	Breast	XPOT_R569T_2	HLA-C16:01	NTIQDLLEL	0.9092	0.9776	0.667	312.33	0.705	43.46	1/982	1/7748
SNV	Breast	XPOT_R569T_8	HLA-C05:01	FIEDILNTI	0.9997	0.9461	0.0628	3.27	0.0421	43.46	1/982	1/7748
SNV	Breast	XPOT_R569T_4	HLA-C05:01	ILNTIQDLL	0.9923	0.946	1.2223	73.88	0.1969	43.46	1/982	1/7748
SNV	Breast	YWHAQ_T71I_4	HLA-C05:01	KTDISDKKL	0.9999	0.8455	0.0819	120.72	0.2363	350.31	1/982	1/7748
SNV	Breast	YWHAQ_T71I_1	HLA-C05:01	ISDKKLQLI	0.9999	0.9005	0.0064	20.71	0.1249	350.31	1/982	1/7748
SNV	Breast	ZFHX4_S526L_6	HLA-A68:02	GTSSSLATV	0.9919	0.58	0.1211	232.74	0.3396	1.36	1/982	1/7748
SNV	Breast	ZNF219_S509L_4	HLA-A30:01	SFRLAHHLK	0.9885	0.9287	0.0899	62.09	0.0307	15.16	1/982	1/7748
SNV	Breast	ZNF219_S509L_5	HLA-A30:01	KSFRLAHHLK	0.9973	0.8987	0.355	199.04	0.0884	15.16	1/982	1/7748
SNV	Breast	ZNF219_S509L_5	HLA-C16:01	KSFRLAHHL	0.9656	0.988	0.0639	59.89	0.3206	15.16	1/982	1/7748
SNV	Breast	ZNF219_S509L_1	HLA-C16:01	LAHHLKVHL	0.9189	0.9822	0.03	124.8	0.4709	15.16	1/982	1/7748
SNV	Breast	ZNF251_L448V_9	HLA-A30:01	KAFRRSSTV	0.9954	0.8988	0.1809	455.33	0.1657	17.08	1/982	1/7748
SNV	Breast	ZNF251_L448V_9	HLA-C16:01	KAFRRSSTV	0.8513	0.9492	0.0609	9.97	0.099	17.08	1/982	1/7748
SNV	Breast	ZNF485_L313V_9	HLA-C16:01	KAFRKSSTV	0.883	0.9507	0.069	11.26	0.1096	2.94	1/982	1/7748
SNV	Breast	ZNF592_S361L_6	HLA-C16:01	SSSKGLPSV	0.8465	0.9866	0.21	315.5	0.7079	19.73	1/982	1/7748
SNV	Breast	ZSWIM6_E520Q_8	HLA-A68:02	TVFTRAIQA	0.9615	0.5115	0.7485	131.6	0.2573	8.06	1/982	1/7748
SNV	Breast	ARFIP2_K92Q_2	HLA-B58:01	EQFDIVKKW	0.7918	0.7287	0.2651	82.61	0.3677	72.74	1/982	1/7748
SNV	Breast	CALCOCO1_D592Y_3	HLA-B45:01	AEYSSSDSEA	0.9861	0.8922	0.0216	15.54	0.0734	19.34	1/982	1/7748
SNV	Breast	FGFR2_V122M_3	HLA-C16:01	FMMNVTDAI	0.8849	0.9569	1.5598	157.03	0.5213	15.74	1/982	1/7748
SNV	Breast	GDF11_G301S_8	HLA-C07:01	KRSRRNLSL	0.996	0.7087	0.112	175.78	0.1111	3.74	1/982	1/7748
SNV	Breast	LRCH3_A56V_3	HLA-B45:01	EEVAVTGVL	0.8215	0.926	0.0828	280.06	0.2957	8.3	1/982	1/7748
SNV	Breast	LRCH3_A56V_1	HLA-C16:01	VAVTGVLSL	0.9283	0.9917	0.0241	2.96	0.0217	8.3	1/982	1/7748
SNV	Breast	MLLT10_R688L_3	HLA-C16:01	SPLSPVSSL	0.6027	0.9851	1.669	465.85	0.821	12.71	1/982	1/7748
SNV	Breast	ALDH9A1_R454Q_1	HLA-C03:04	QAHRVVAEL	0.9992	0.9905	0.0717	86.42	0.2593	114.21	1/982	1/7748
SNV	Breast	HUWE1_A889T_5	HLA-C03:04	LSAQTTPLL	0.9993	0.9708	0.2055	166.06	0.3358	52.97	1/982	1/7748
SNV	Breast	HUWE1_A889T_2	HLA-C03:04	QTTPLLHAL	0.9995	0.9907	0.1919	255.59	0.3949	52.97	1/982	1/7748
SNV	Breast	IRX2_A357V_5	HLA-A02:02	GLPAVAAPA	0.9727	0.7354	0.5234	173.27	0.8244	38.28	1/982	1/7748
SNV	Breast	MEI1_I383T_7	HLA-B08:01	SLKMNNTEL	0.9829	0.5263	0.0166	35.08	0.0922	1.49	1/982	1/7748
SNV	Breast	PCDHB11_S696L_8	HLA-A02:02	YLVVALALV	0.99	0.755	0.0125	16.3	0.3408	1.97	1/982	1/7748
SNV	Breast	PCDHB11_S696L_5	HLA-C03:04	VALALVSSL	0.9997	0.9957	0.0536	4.09	0.0403	1.97	1/982	1/7748
SNV	Breast	PIK3CA_M1004I_1	HLA-A02:02	IMLGSGMPEL	0.9938	0.5552	0.391	114.39	0.7139	7.54	1/982	1/7748
SNV	Breast	PIK3CA_M1004I_3	HLA-C03:04	FSIMLGSGM	0.9958	0.9924	0.2805	212.68	0.3697	7.54	1/982	1/7748
SNV	Breast	PRMT9_I165V_10	HLA-A02:02	MLNDTKRNTV	0.9873	0.8019	0.905	118.64	0.7235	8.28	1/982	1/7748
SNV	Breast	ZNF169_E76D_4	HLA-C07:01	WREDNEHLL	0.9762	0.7355	0.2095	171.27	0.1101	1.87	1/982	1/7748
SNV	Breast	AP5Z1_R294W_3	HLA-B15:01	RLWEVAFEY	0.9971	0.966	0.1054	103.35	0.2895	25.21	1/982	1/7748
SNV	Breast	ERBB2_V777L_5	HLA-A02:01	VMAGLGSPYV	0.9947	0.6909	0.2069	92.66	0.3817	229.1	2/982	2/7748
SNV	Breast	ERBB2_V777L_5	HLA-B15:01	VMAGLGSPY	0.9994	0.9532	0.0061	3.83	0.0381	229.1	1/982	1/7748
SNV	Breast	ERBB2_V777L_6	HLA-B15:01	YVMAGLGSPY	0.9997	0.9644	0.1375	108.78	0.2942	229.1	1/982	1/7748
SNV	Breast	GALNT7_P452L_6	HLA-B15:01	WQGNPLPIY	0.9981	0.9246	0.2722	23.87	0.1541	36.88	1/982	1/7748
SNV	Breast	ALDH2_A465V_5	HLA-B35:01	QALQVGTVW	0.8233	0.8864	0.4335	482.4	0.4845	40.83	1/982	1/7748
SNV	Breast	ASUN_D220Y_11	HLA-B35:01	YPVGEDSLVSY	0.9993	0.762	0.11	1.49	0.0226	22.38	1/982	1/7748
SNV	Breast	ATR_E1840Q_3	HLA-A31:01	SFQRGSYQR	0.9773	0.5336	0.2893	39.83	0.1282	7.36	1/982	1/7748
SNV	Breast	ATR_E1840Q_4	HLA-A31:01	ASFQRGSYQR	0.9907	0.5582	0.3965	19.6	0.0835	7.36	1/982	1/7748
SNV	Breast	ATR_E2103K_3	HLA-A31:01	AYKWEKAGR	0.9471	0.6607	0.7206	157.48	0.268	7.36	1/982	1/7748
SNV	Breast	ATR_E2103K_4	HLA-A31:01	KAYKWEKAGR	0.9953	0.572	0.2449	178.42	0.2817	7.36	1/982	1/7748
SNV	Breast	CELF1_G331S_1	HLA-C15:02	SSLAGMAAL	0.9992	0.8809	0.1703	35.07	0.2161	49.53	1/982	1/7748
SNV	Breast	CELF1_G331S_7	HLA-C03:03	TAGLNVSSL	0.9992	0.9838	0.1786	229.51	0.3802	49.53	1/982	1/7748
SNV	Breast	CELF1_G331S_1	HLA-C03:03	SSLAGMAAL	0.9996	0.9874	0.0359	6.48	0.0598	49.53	1/982	1/7748
SNV	Breast	CHD9_D849H_6	HLA-A31:01	IWKKIHQSR	0.9311	0.5006	0.3827	81.23	0.1875	5.18	1/982	1/7748
SNV	Breast	CMAS_D251H_8	HLA-C15:02	HSVDIDVHI	0.9989	0.7359	0.2339	78.12	0.3491	34.24	1/982	1/7748
SNV	Breast	DHX29_P403A_6	HLA-A31:01	SFEKVAVGR	0.9676	0.7166	0.8307	181.38	0.2835	30.79	1/982	1/7748
SNV	Breast	DNAAF5_D807N_4	HLA-C15:02	AIQNAILEV	0.9976	0.9443	0.4774	87.6	0.37	18.5	1/982	1/7748
SNV	Breast	DNAAF5_D807N_5	HLA-C15:02	RAIQNAILEV	0.9998	0.9194	0.5354	255.8	0.5767	18.5	1/982	1/7748
SNV	Breast	DOC2A_D7N_3	HLA-C15:02	MTINIQEHM	0.9984	0.9322	0.2449	103.74	0.4008	3.68	3/982	3/7748
SNV	Breast	DOC2A_D7N_3	HLA-C15:02	MTINIQEHM	0.9984	0.9322	0.2449	103.74	0.4008	3.68	3/982	3/7748
SNV	Breast	DOC2A_D7N_3	HLA-C15:02	MTINIQEHM	0.9984	0.9322	0.2449	103.74	0.4008	3.68	3/982	3/7748
SNV	Breast	EGFLAM_S633F_10	HLA-B35:01	WPLEPQHYLF	0.9991	0.7104	0.2676	120.9	0.3269	6.02	1/982	1/7748
SNV	Breast	EIF4G3_K1042N_6	HLA-A31:01	TVQGANNSR	0.88	0.8403	0.4669	158.08	0.2684	31.2	1/982	1/7748
SNV	Breast	ELMO1_D527H_6	HLA-A31:01	RMNQEHFQSR	0.9903	0.7202	0.2215	24.74	0.0955	6.81	1/982	1/7748
SNV	Breast	FAIM_R30Q_6	HLA-B35:01	TTSGKQVVY	0.8224	0.7126	0.5653	246.9	0.4	8.18	1/982	1/7748
SNV	Breast	FLNA_S2372L_3	HLA-B35:01	SPLGALEECY	0.9833	0.8572	0.2233	17.68	0.1685	318.81	1/982	1/7748
SNV	Breast	FLNA_S2372L_6	HLA-C15:02	KVHSPLGAL	0.9939	0.9264	0.2003	31.04	0.1967	318.81	1/982	1/7748
SNV	Breast	FLNA_S2372L_6	HLA-C03:03	KVHSPLGAL	0.954	0.9899	0.0794	153.73	0.3253	318.81	1/982	1/7748
SNV	Breast	FREM1_G479E_8	HLA-C15:02	TVADLQAEV	0.9996	0.9681	0.4059	74.32	0.34	1.53	1/982	1/7748
SNV	Breast	GBP4_P360S_2	HLA-C15:02	LSTDTLQEL	0.9997	0.9011	0.0549	160.38	0.4779	28.44	1/982	1/7748
SNV	Breast	GBP4_P360S_1	HLA-C15:02	STDTLQELL	0.9938	0.8689	0.0956	120.42	0.4272	28.44	1/982	1/7748
SNV	Breast	GBP4_P360S_2	HLA-C03:03	LSTDTLQEL	0.9998	0.9918	0.0717	197.85	0.3598	28.44	1/982	1/7748
SNV	Breast	KCNQ3_L853V_9	HLA-C15:02	FTPSGSMPV	0.9902	0.917	0.2496	228.98	0.5518	1.87	1/982	1/7748
SNV	Breast	MAMDC2_R451K_7	HLA-C15:02	SVLESPKGV	0.997	0.7897	1.2601	167.99	0.4861	4.47	1/982	1/7748
SNV	Breast	MAP3K4_S201F_2	HLA-A31:01	VFVPMPIAR	0.9703	0.5959	0.2796	24.54	0.0953	17.49	1/982	1/7748
SNV	Breast	MAP3K4_S201F_4	HLA-B51:01	LPVFVPMPI	0.9968	0.6236	0.0026	23.68	0.1156	17.49	1/982	1/7748
SNV	Breast	MEIS1_D351N_6	HLA-B35:01	TPYNPNGQPM	0.9841	0.8503	0.3714	181.4	0.3684	3.61	1/982	1/7748
SNV	Breast	NBPF12_S275L_9	HLA-C15:02	ATNVSMVVL	0.9987	0.8114	0.2796	26.61	0.1774	7.18	1/982	1/7748
SNV	Breast	NTN4_S402L_1	HLA-B51:01	LAVLPANSV	0.9973	0.6117	0.031	39.86	0.1598	97.43	1/982	1/7748
SNV	Breast	NTN4_S402L_1	HLA-C15:02	LAVLPANSV	0.999	0.9452	0.1871	333.68	0.6531	97.43	1/982	1/7748
SNV	Breast	NTN4_S402L_1	HLA-C03:03	LAVLPANSV	0.9894	0.9835	0.1526	81.02	0.2526	97.43	1/982	1/7748
SNV	Breast	NTN4_S402T_1	HLA-B51:01	TAVLPANSV	0.9954	0.6557	0.0235	43.32	0.1664	97.43	1/982	1/7748
SNV	Breast	NTN4_S402T_1	HLA-C15:02	TAVLPANSV	0.9992	0.9423	0.22	486.54	0.766	97.43	1/982	1/7748
SNV	Breast	NTN4_S402T_1	HLA-C03:03	TAVLPANSV	0.9902	0.9841	0.2013	128.54	0.3008	97.43	1/982	1/7748
SNV	Breast	NUDT16_E160Q_6	HLA-B35:01	LPTFLQNSF	0.9964	0.8717	0.0181	2.32	0.0446	27.95	1/982	1/7748
SNV	Breast	PIK3CA_H1047L_2	HLA-A03:01	ALHGGWTTK	0.9988	0.5947	0.0127	2.89	0.0245	9.54	3/982	7/7748
SNV	Breast	REEP2_R173L_3	HLA-C15:02	RLLPSPGSL	0.9378	0.9633	1.4116	112.86	0.4157	2.91	1/982	1/7748
SNV	Breast	REEP2_R173L_3	HLA-C03:03	RLLPSPGSL	0.8661	0.9914	1.0471	213.29	0.3701	2.91	1/982	1/7748
SNV	Breast	RIF1_G902E_3	HLA-C15:02	YTETYDSEL	0.9649	0.9367	0.4921	444.71	0.7407	9.32	1/982	1/7748
SNV	Breast	RREB1_C1545S_3	HLA-C15:02	QTSERTFTL	0.9996	0.9064	0.0779	11.04	0.0892	13.27	1/982	1/7748
SNV	Breast	RREB1_C1545S_3	HLA-C03:03	QTSERTFTL	0.9992	0.983	0.1821	429.87	0.4782	13.27	1/982	1/7748
SNV	Breast	SFMBT1_D753N_6	HLA-A31:01	TSLPPNRQR	0.935	0.7733	0.4744	144.26	0.2584	6.4	1/982	1/7748
SNV	Breast	SFMBT1_D753N_5	HLA-A31:01	SLPPNRQRR	0.9045	0.7096	0.919	390.94	0.3883	6.4	1/982	1/7748
SNV	Breast	SFMBT1_D753N_7	HLA-A31:01	STSLPPNRQR	0.9528	0.6797	0.6844	253.8	0.3265	6.4	1/982	1/7748
SNV	Breast	TBC1D16_E390D_6	HLA-B35:01	ETHPEDSMY	0.8646	0.9137	0.8751	187.4	0.3718	65.66	1/982	1/7748
SNV	Breast	VPS39_V163M_1	HLA-B35:01	MPDVPKSM	0.9932	0.9767	1.0844	251.44	0.4023	37.76	1/982	1/7748
SNV	Breast	VPS39_V163M_1	HLA-B35:01	MPDVPKSMAW	0.9935	0.9799	0.3389	12.45	0.1465	37.76	1/982	1/7748
SNV	Breast	VPS39_V163M_3	HLA-C15:02	FSMPDVPKSM	0.9981	0.882	0.1703	311.91	0.631	37.76	1/982	1/7748
SNV	Breast	VPS39_V163M_2	HLA-C03:03	SMPDVPKSM	0.9927	0.9835	0.1442	150.4	0.3223	37.76	1/982	1/7748
SNV	Breast	VPS39_V163M_3	HLA-C03:03	FSMPDVPKSM	0.9999	0.9869	0.0964	264.33	0.3995	37.76	1/982	1/7748
SNV	Breast	ZNF234_R30S_7	HLA-C15:02	LLDPVQSNL	0.9961	0.8908	0.1703	8.49	0.0751	7.45	1/982	1/7748
SNV	Breast	ZNF234_R30S_7	HLA-C03:03	LLDPVQSNL	0.9967	0.9854	0.3896	362.37	0.4505	7.45	1/982	1/7748
SNV	Breast	AARS_L857I_6	HLA-B35:01	NPNQPIVIL	0.9723	0.9024	0.2374	7.81	0.1129	86.35	1/982	1/7748
SNV	Breast	ABCB4_S99F_6	HLA-B35:01	FPVNFFLSL	0.9951	0.7326	0.0294	10.9	0.1355	1.17	1/982	1/7748
SNV	Breast	ABCB4_S99F_8	HLA-C03:04	FSFPVNFFL	0.999	0.9908	0.0043	25.88	0.157	1.17	1/982	1/7748
SNV	Breast	ABCB4_S99F_6	HLA-C03:04	FPVNFFLSL	0.9949	0.9789	0.5296	173.59	0.3419	1.17	1/982	1/7748
SNV	Breast	ABCB6_S456F_5	HLA-B15:01	RAVDFLLNF	0.9962	0.8177	0.1599	69.67	0.2532	3.15	1/982	1/7748
SNV	Breast	ABCB6_S456F_5	HLA-C03:04	RAVDFLLNF	0.99	0.9842	0.2661	49.12	0.1999	3.15	1/982	1/7748
SNV	Breast	ABCC6_H107Y_4	HLA-A02:01	FLIYPTVWL	0.9822	0.7536	0.0389	4.36	0.0937	1.13	1/982	1/7748
SNV	Breast	ABCC6_H107Y_1	HLA-B35:01	YPTVWLTTM	0.9982	0.8893	0.0275	2.3	0.0443	1.13	1/982	1/7748
SNV	Breast	ABCC6_H107Y_10	HLA-B35:01	TPEAPEFLIY	0.9838	0.9275	0.2676	4.14	0.0791	1.13	1/982	1/7748
SNV	Breast	ACACB_E762K_5	HLA-A02:01	YLIAKKVQA	0.9732	0.6235	0.365	15.17	0.1937	3.22	1/982	1/7748
SNV	Breast	ACKR3_M138I_1	HLA-C03:04	ISVDRYLSI	0.9988	0.9632	0.0984	118	0.2917	25.85	1/982	1/7748
SNV	Breast	ADAR_G11V_8	HLA-B15:01	RQGYSLSVY	0.9995	0.699	0.0595	2.95	0.0267	195.02	1/982	1/7748
SNV	Breast	ADAR_G11V_8	HLA-B15:01	RQGYSLSVYY	0.9995	0.6407	0.404	32.26	0.1761	195.02	1/982	1/7748
SNV	Breast	ADCY2_L637V_8	HLA-C03:04	ISFGAAFVL	0.9994	0.9939	0.131	10.37	0.0849	9.93	1/982	1/7748
SNV	Breast	ADPRH_E339Q_4	HLA-B15:01	RLEQTARALY	0.9978	0.669	0.5136	352	0.4587	9.92	1/982	1/7748
SNV	Breast	AGPS_T72M_9	HLA-C03:04	ASAATAAPM	0.9964	0.9758	0.1441	346.38	0.4432	12.07	1/982	1/7748
SNV	Breast	AIM1_R1414Q_2	HLA-B15:01	RQNQIHLF	0.999	0.9034	0.9053	105.88	0.2917	43.86	1/982	1/7748
SNV	Breast	AKT3_L151F_8	HLA-A02:01	TMNDFDYFKL	0.9862	0.5441	0.5579	117.91	0.4169	14.79	1/982	1/7748
SNV	Breast	AKT3_L151F_9	HLA-B15:01	KTMNDFDYF	0.956	0.9142	0.7365	202	0.3726	14.79	1/982	1/7748
SNV	Breast	AMMECR1L_I282M_7	HLA-B15:01	RSEKVTMSY	0.956	0.9436	0.4494	68.44	0.2515	22.73	1/982	1/7748
SNV	Breast	AMMECR1L_I282M_4	HLA-B15:01	KVTMSYAEY	0.9915	0.863	0.269	244.79	0.3977	22.73	1/982	1/7748
SNV	Breast	ANK2_E1032K_1	HLA-B15:01	KVGPSGAQF	0.9961	0.782	0.169	7.2	0.0683	2.77	1/982	1/7748
SNV	Breast	AP2A2_L67V_2	HLA-B35:01	FVLGHDIDF	0.946	0.7708	0.1053	220.68	0.3885	31.07	1/982	1/7748
SNV	Breast	AP2A2_L67V_2	HLA-C03:04	FVLGHDIDF	0.9701	0.9773	0.3653	312.95	0.4268	31.07	1/982	1/7748
SNV	Breast	APBA1_E158K_6	HLA-C03:04	HSLEHKEAM	0.9973	0.9958	0.0794	363.11	0.4508	1.3	1/982	1/7748
SNV	Breast	APC_E2639Q_2	HLA-B15:01	AQSKTLIY	0.9997	0.7172	0.7049	47.78	0.213	5.95	1/982	1/7748
SNV	Breast	APC_E2639Q_3	HLA-B15:01	GAQSKTLIY	0.9938	0.7956	0.5288	213.99	0.3802	5.95	1/982	1/7748
SNV	Breast	APOBR_R1061T_1	HLA-B35:01	TPLGHGFGL	0.9514	0.9776	0.2116	36.08	0.2184	26.39	1/982	1/7748
SNV	Breast	APOC2_L44V_9	HLA-A02:01	FLTQVKESV	0.9974	0.6167	0.1273	8.54	0.1459	1.45	1/982	1/7748
SNV	Breast	APOC2_L44V_6	HLA-B35:01	QVKESVSSY	0.9458	0.8806	0.1755	53.57	0.2501	1.45	1/982	1/7748
SNV	Breast	APOC2_L44V_6	HLA-B15:01	QVKESVSSY	0.9999	0.7619	0.1005	2.73	0.0239	1.45	1/982	1/7748
SNV	Breast	APOC2_L44V_7	HLA-B15:01	TQVKESVSSY	0.9999	0.707	0.1353	1.9	0.0104	1.45	1/982	1/7748
SNV	Breast	ARHGAP39_E260K_3	HLA-B35:01	APKADGTIF	0.9621	0.7126	0.274	21.22	0.18	16.93	1/982	1/7748
SNV	Breast	ARHGAP39_E260K_4	HLA-B35:01	FAPKADGTIF	0.969	0.8964	0.3683	26.48	0.1947	16.93	1/982	1/7748
SNV	Breast	ARHGAP39_E260K_3	HLA-B35:01	APKADGTIFF	0.9291	0.7337	0.4015	49.5	0.2438	16.93	1/982	1/7748
SNV	Breast	ARHGEF40_P54L_4	HLA-A02:01	FLVLAKHLL	0.9427	0.6604	0.1953	78.14	0.3598	22.01	1/982	1/7748
SNV	Breast	ARID1A_P1945L_7	HLA-B35:01	FPFGISLAQ	0.956	0.9069	0.0906	27.4	0.1969	40.4	1/982	1/7748
SNV	Breast	ASIC3_S25L_1	HLA-B15:01	LMHGLGHVF	0.9997	0.9102	0.0015	2.76	0.0241	1.05	1/982	1/7748
SNV	Breast	ATF2_S500L_9	HLA-C03:04	IVMAPSSQL	0.9996	0.9819	0.0519	3.41	0.0351	21.26	1/982	1/7748
SNV	Breast	ATRX_S67F_9	HLA-B15:01	NSKEEGTSF	0.9971	0.9301	0.3211	262.07	0.4086	7.65	1/982	1/7748
SNV	Breast	ATXN2_S709F_4	HLA-A02:01	VLAFPQAGI	0.9484	0.7491	0.702	346.81	0.5961	9.42	1/982	1/7748
SNV	Breast	ATXN2_S709F_9	HLA-B35:01	TPSGPVLAF	0.9966	0.7589	0.017	1.16	0.01	9.42	1/982	1/7748
SNV	Breast	ATXN2_S709F_10	HLA-B35:01	NTPSGPVLAF	0.9284	0.5454	0.8611	25.48	0.1921	9.42	1/982	1/7748
SNV	Breast	ATXN2_S709F_3	HLA-C03:04	LAFPQAGII	0.9789	0.9884	0.2189	70.71	0.2383	9.42	1/982	1/7748
SNV	Breast	AVPI1_E35K_5	HLA-A02:01	FQDAKLLQI	0.9859	0.5099	0.363	53.04	0.31	23.32	1/982	1/7748
SNV	Breast	AVPI1_E35K_1	HLA-B15:01	KLLQIQALF	0.8803	0.9209	0.1353	362.13	0.4636	23.32	1/982	1/7748
SNV	Breast	AVPI1_E35K_5	HLA-C04:01	FQDAKLLQI	0.9999	0.7781	0.0262	131.57	0.0808	23.32	1/982	1/7748
SNV	Breast	BAG6_L140F_9	HLA-B35:01	YVMVGTFNF	0.9827	0.9005	0.1903	65.37	0.2681	151.3	1/982	1/7748
SNV	Breast	BAG6_L140F_9	HLA-B15:01	YVMVGTFNF	0.9772	0.9044	0.0968	436.59	0.4953	151.3	1/982	1/7748
SNV	Breast	BAG6_L140F_9	HLA-C03:04	YVMVGTFNF	0.9878	0.9844	1.082	107.62	0.2821	151.3	1/982	1/7748
SNV	Breast	BBX_S177C_5	HLA-B35:01	FPSDCSRDL	0.9823	0.7656	0.1722	194.76	0.3757	11.03	1/982	1/7748
SNV	Breast	BCL2L14_H34N_1	HLA-B35:01	NVFKSTPAL	0.9022	0.7211	0.5189	470.48	0.4814	1.72	1/982	1/7748
SNV	Breast	BCL2L14_H34N_1	HLA-C03:04	NVFKSTPAL	0.9987	0.9548	0.0984	8.18	0.0699	1.72	1/982	1/7748
SNV	Breast	BIRC2_E347K_4	HLA-B35:01	FVDKIQGRY	0.9481	0.8028	0.4335	44.96	0.236	46.6	1/982	1/7748
SNV	Breast	BMX_M384I_5	HLA-C03:04	NSAGIITRL	0.9997	0.9801	0.5775	193.48	0.3568	1.12	1/982	1/7748
SNV	Breast	BRAF_S112C_4	HLA-C03:04	FSVCSSASM	0.9991	0.9907	0.0181	185.09	0.3507	5.88	1/982	1/7748
SNV	Breast	C11orf45_P17A_2	HLA-C03:04	SAPWTHAAI	0.9898	0.9812	0.1565	390.29	0.4625	2.66	1/982	1/7748
SNV	Breast	C16orf70_Q107H_8	HLA-A02:01	AIAPTIEHI	0.9894	0.6006	0.3887	53.34	0.3107	12.82	1/982	1/7748
SNV	Breast	C1orf127_E267Q_6	HLA-A02:01	FQPESQVLV	0.9966	0.7192	0.354	62.88	0.3319	1.03	1/982	1/7748
SNV	Breast	C1orf127_E267Q_7	HLA-C04:01	SFQPESQVL	0.7503	0.8897	0.0194	154.44	0.0866	1.03	1/982	1/7748
SNV	Breast	C6orf120_Q48H_1	HLA-B35:01	HIGAGNYSY	0.8205	0.8705	0.2285	24.77	0.1903	33.25	1/982	1/7748
SNV	Breast	C6orf120_Q48H_1	HLA-B15:01	HIGAGNYSY	0.9163	0.8972	0.2963	41.45	0.1981	33.25	1/982	1/7748
SNV	Breast	C6orf120_Q48H_4	HLA-B15:01	VQGHIGAGNY	0.9996	0.7863	0.3633	37.73	0.1898	33.25	1/982	1/7748
SNV	Breast	CABIN1_D1356H_6	HLA-B35:01	TATPIHHDY	0.9903	0.8	0.0764	2.31	0.0445	40.37	1/982	1/7748
SNV	Breast	CABIN1_D1356H_7	HLA-B35:01	YTATPIHHDY	0.9869	0.6387	1.3634	242.83	0.3983	40.37	1/982	1/7748
SNV	Breast	CABIN1_D1356H_7	HLA-B15:01	YTATPIHHDY	0.9979	0.6959	1.5004	339.35	0.4525	40.37	1/982	1/7748
SNV	Breast	CACNB3_E354K_7	HLA-B35:01	HLAEYLKVY	0.9125	0.9205	0.5905	79.19	0.2854	14.05	1/982	1/7748
SNV	Breast	CACNB3_E354K_7	HLA-B15:01	HLAEYLKVY	0.9996	0.8995	0.1466	3.32	0.0318	14.05	1/982	1/7748
SNV	Breast	CAMK2D_E237K_9	HLA-A03:01	GAYDFPSPK	0.9984	0.5057	0.0455	3.72	0.037	18.19	1/982	1/7748
SNV	Breast	CAMK2D_E237K_10	HLA-A03:01	AGAYDFPSPK	0.9308	0.5863	1.8409	63.15	0.237	18.19	1/982	1/7748
SNV	Breast	CAMK2D_E237K_5	HLA-B35:01	FPSPKWDTV	0.946	0.7999	0.1574	88.1	0.2951	18.19	1/982	1/7748
SNV	Breast	CAMK2D_E237K_8	HLA-C04:01	AYDFPSPKW	0.8782	0.8983	0.4215	163.61	0.0887	18.19	1/982	1/7748
SNV	Breast	CAPSL_D70H_7	HLA-B15:01	FMKGLNHY	0.9998	0.8908	0.7262	91.32	0.2781	4.85	1/982	1/7748
SNV	Breast	CAPSL_D70H_9	HLA-B15:01	KEFMKGLNHY	0.9977	0.7772	0.4726	486.17	0.5149	4.85	1/982	1/7748
SNV	Breast	CARHSP1_E106K_7	HLA-B35:01	VPVEGDKVTY	0.9925	0.9215	0.1182	1.47	0.022	43.16	1/982	2/7748
SNV	Breast	CASD1_F17L_2	HLA-A02:01	YLSVRSAKV	0.9729	0.5439	0.0844	62.1	0.3303	38.03	1/982	1/7748
SNV	Breast	CCDC57_L152V_5	HLA-C04:01	QYENVKWTL	0.9519	0.6891	0.3171	240.15	0.1097	13.79	1/982	1/7748
SNV	Breast	CCNK_E454K_5	HLA-B15:01	MMKTKGPSY	0.9997	0.8559	0.0124	1.86	0.0098	3.4	1/982	1/7748
SNV	Breast	CCNK_E454K_6	HLA-B15:01	SMMKTKGPSY	0.9997	0.9076	0.0665	6.27	0.0596	3.4	1/982	1/7748
SNV	Breast	CD46_G67A_2	HLA-C03:04	KAYFYIPPL	0.9945	0.9801	0.2379	47.96	0.1982	105.87	1/982	1/7748
SNV	Breast	CD84_E35Q_5	HLA-B15:01	GILGQSVTF	0.9947	0.9689	0.2421	74.61	0.2595	11.52	1/982	1/7748
SNV	Breast	CENPE_E530Q_2	HLA-B15:01	KQKNDLDEF	0.9995	0.8979	0.1821	7.65	0.0731	1.33	1/982	1/7748
SNV	Breast	CENPF_S825F_9	HLA-B35:01	EADQSPKNF	0.8333	0.8972	0.7285	152.83	0.3509	4.57	1/982	1/7748
SNV	Breast	CEP120_L823V_9	HLA-A02:01	RLQSEINLV	0.9975	0.5275	0.2221	7.66	0.1368	12.86	1/982	1/7748
SNV	Breast	CHD7_Q61E_4	HLA-C03:04	STNENQTKL	0.994	0.9907	0.2131	74.07	0.2432	4.16	1/982	1/7748
SNV	Breast	CIZ1_R123Q_7	HLA-B15:01	ATLGNLQGY	0.9774	0.8931	0.404	74.77	0.2597	64.68	1/982	1/7748
SNV	Breast	CLASRP_S385F_9	HLA-B15:01	SSSSSSSSF	0.9894	0.9151	0.0801	87.14	0.2738	28.6	1/982	1/7748
SNV	Breast	CNOT11_S106L_9	HLA-C03:04	KADHFRLGL	0.9778	0.9689	0.1535	439.94	0.4819	85.31	1/982	1/7748
SNV	Breast	CNOT6L_L81V_7	HLA-B35:01	IAKLHNVVY	0.9827	0.6423	0.0516	16.26	0.1635	14.61	1/982	1/7748
SNV	Breast	CNOT6L_L81V_7	HLA-B15:01	IAKLHNVVY	0.9992	0.6896	0.1054	11.25	0.1039	14.61	1/982	1/7748
SNV	Breast	COL6A3_V399L_8	HLA-B35:01	IATDDNLLF	0.9478	0.8364	0.0715	15.12	0.1591	275.11	1/982	1/7748
SNV	Breast	COL6A3_V399L_8	HLA-C03:04	IATDDNLLF	0.9972	0.9838	0.2016	422.15	0.4752	275.11	1/982	1/7748
SNV	Breast	COL7A1_D741N_1	HLA-B35:01	NGLEPDTEY	0.8978	0.9471	0.3912	99.86	0.3073	9.51	1/982	1/7748
SNV	Breast	COPB1_E584K_8	HLA-B15:01	KQNSFVAKAM	0.9995	0.8048	0.42	469.26	0.5083	116.32	1/982	1/7748
SNV	Breast	COPB1_E584K_4	HLA-C03:04	FVAKAMLLM	0.9934	0.9864	0.1854	86.41	0.2593	116.32	1/982	1/7748
SNV	Breast	COPB1_E584K_1	HLA-C03:04	KAMLLMATI	0.8493	0.9643	0.8694	367.19	0.4527	116.32	1/982	1/7748
SNV	Breast	CREBBP_Q790K_6	HLA-B15:01	AQAPAKSQF	0.9997	0.8325	0.0278	1.8	0.0093	17.85	1/982	1/7748
SNV	Breast	CREBBP_Q790K_7	HLA-B15:01	MAQAPAKSQF	0.9994	0.8543	0.7641	15.25	0.1219	17.85	1/982	1/7748
SNV	Breast	CRISPLD1_P27A_9	HLA-C03:04	RAIPAMVVA	0.9723	0.987	1.4706	132.17	0.3046	8.29	1/982	1/7748
SNV	Breast	CRISPLD1_P27A_4	HLA-C03:04	MVVANATLL	0.998	0.9911	0.044	13.23	0.0998	8.29	1/982	1/7748
SNV	Breast	CTNND2_Q101E_8	HLA-B15:01	SMSSAEEEF	0.9949	0.96	0.045	96.95	0.2836	10.97	1/982	1/7748
SNV	Breast	CXorf21_S265L_2	HLA-B15:01	TLKARDIVF	0.9955	0.8602	0.3211	7.47	0.0709	8.41	1/982	1/7748
SNV	Breast	CYP4F11_F124L_8	HLA-B35:01	VAPKDMILY	0.986	0.7502	0.4305	175.81	0.3652	1.63	1/982	1/7748
SNV	Breast	CYP4F11_F124L_9	HLA-B15:01	AVAPKDMILY	0.9993	0.8526	0.5175	72.99	0.2575	1.63	1/982	1/7748
SNV	Breast	CYP4F11_F124L_9	HLA-C03:04	AVAPKDMIL	0.9979	0.9792	0.3364	19.8	0.1373	1.63	1/982	1/7748
SNV	Breast	DCHS1_D1028N_3	HLA-B35:01	APNGGPITY	0.9927	0.9108	0.0296	1.21	0.0141	9.49	1/982	1/7748
SNV	Breast	DCHS1_D1028N_4	HLA-B35:01	QAPNGGPITY	0.8647	0.8125	0.2339	4.26	0.0809	9.49	1/982	1/7748
SNV	Breast	DCHS1_D1028N_3	HLA-B35:01	APNGGPITYH	0.8528	0.8831	1.1939	424.27	0.4683	9.49	1/982	1/7748
SNV	Breast	DCHS1_D1028N_5	HLA-B35:01	AQAPNGGPITY	0.9851	0.8412	0.6026	59.97	0.2603	9.49	1/982	1/7748
SNV	Breast	DCHS1_D1028N_4	HLA-B15:01	QAPNGGPITY	0.9935	0.8246	0.7153	398.01	0.4796	9.49	1/982	1/7748
SNV	Breast	DCHS1_D1028N_5	HLA-B15:01	AQAPNGGPITY	1	0.8735	0.0869	2.77	0.0242	9.49	1/982	1/7748
SNV	Breast	DCTN1_R583Q_5	HLA-B15:01	AQANQHMSL	0.999	0.8724	0.393	27.28	0.1638	53.94	1/982	1/7748
SNV	Breast	DCTN1_R583Q_4	HLA-C03:04	QANQHMSLL	0.9989	0.9848	0.1919	148.79	0.3208	53.94	1/982	1/7748
SNV	Breast	DICER1_S1477C_8	HLA-B35:01	SPFSTTDCAY	0.9941	0.5622	0.0333	4.16	0.0795	23.06	1/982	1/7748
SNV	Breast	DIEXF_Q433H_3	HLA-B15:01	ILHRSIRLY	0.9944	0.7312	0.1619	18.2	0.1342	10.56	1/982	1/7748
SNV	Breast	DNAH6_R2316K_3	HLA-B15:01	TIKEEIQIF	0.9988	0.9322	0.352	20.18	0.1418	1.71	1/982	1/7748
SNV	Breast	DNAJA4_S290F_3	HLA-C03:04	ITFKAGEVI	0.9243	0.9868	0.4609	195.3	0.3581	38.13	1/982	1/7748
SNV	Breast	DOCK2_E1386D_7	HLA-B15:01	TQFPNADKM	0.9969	0.8716	0.3726	301.91	0.4327	12.97	1/982	1/7748
SNV	Breast	DUOX1_E1317K_11	HLA-A03:01	RIACLALGTTK	0.9992	0.5377	0.4522	191.48	0.3574	4.41	1/982	1/7748
SNV	Breast	DUOX1_E1317K_8	HLA-B15:01	CLALGTTKY	0.998	0.9255	0.0636	491.72	0.517	4.41	1/982	1/7748
SNV	Breast	DYNC1LI1_F10L_3	HLA-A02:01	SLGSSPPGL	0.8736	0.7337	0.4794	74.97	0.3545	26.27	1/982	1/7748
SNV	Breast	DYNC2H1_D4169H_8	HLA-A02:01	ALLSETLHL	0.9966	0.7024	0.1229	2.05	0.0462	7.59	1/982	1/7748
SNV	Breast	EED_R120T_8	HLA-C03:04	FATVGSNTV	0.99	0.9943	0.0478	9.38	0.0783	12.15	1/982	1/7748
SNV	Breast	EED_R120T_6	HLA-C03:04	TVGSNTVTL	0.9964	0.9931	0.1885	68.42	0.2348	12.15	1/982	1/7748
SNV	Breast	EGLN1_P304L_2	HLA-A02:01	YLGNGTGYV	0.9854	0.7455	0.0623	3.67	0.0771	19.59	1/982	1/7748
SNV	Breast	EHBP1_E97Q_6	HLA-C04:01	EFEDKQWTF	0.9677	0.6499	0.2075	279.45	0.1168	9.85	1/982	1/7748
SNV	Breast	EIF3M_C125Y_4	HLA-A02:01	TVYYSLIKV	0.9277	0.5334	0.7056	444.66	0.6496	76.39	1/982	1/7748
SNV	Breast	EIF3M_C125Y_9	HLA-B35:01	TPVRYTVYY	0.9959	0.7146	0.0239	1.49	0.0225	76.39	1/982	1/7748
SNV	Breast	EPHA4_Q978H_8	HLA-B15:01	AMRTQMQHM	0.9981	0.92	0.259	38.41	0.1914	13.61	1/982	1/7748
SNV	Breast	ESRP1_I493M_1	HLA-B15:01	MQMKSADRAF	0.9996	0.9513	0.1435	9.9	0.094	40.74	1/982	1/7748
SNV	Breast	ETFDH_G429V_3	HLA-B35:01	TIVLHVTEY	0.9765	0.8446	0.32	57.09	0.2559	17.46	1/982	1/7748
SNV	Breast	ETFDH_G429V_3	HLA-B15:01	TIVLHVTEY	0.9993	0.6525	0.2165	62.34	0.2417	17.46	1/982	1/7748
SNV	Breast	EXOG_S226L_6	HLA-B35:01	NVAVPLHLY	0.9865	0.7371	0.2889	30.43	0.2047	4.12	1/982	1/7748
SNV	Breast	FAM179B_S1174F_5	HLA-B15:01	KVSIFKSTY	0.9983	0.7318	0.0902	19	0.1374	8.5	1/982	1/7748
SNV	Breast	FAM212A_S251L_9	HLA-C03:04	TAMAGKRLL	0.9989	0.9778	0.2016	54.83	0.2115	10.85	1/982	1/7748
SNV	Breast	FAM21A_S890F_3	HLA-C03:04	FSFAKSQPL	0.9999	0.9883	0.0011	3.84	0.0384	35.11	1/982	1/7748
SNV	Breast	FANCD2_L436V_3	HLA-C03:04	SIVSLAQSL	0.9987	0.9845	0.2016	310.32	0.4254	5.23	1/982	1/7748
SNV	Breast	FBXL13_E720Q_1	HLA-B15:01	QLTVKKSTY	0.9562	0.7145	0.3304	437.43	0.4956	1.57	1/982	1/7748
SNV	Breast	FBXL13_E720Q_2	HLA-B15:01	LQLTVKKSTY	0.9991	0.7521	0.269	362.64	0.4638	1.57	1/982	1/7748
SNV	Breast	FMR1_L255V_2	HLA-B35:01	DVDEDTCTF	0.9012	0.9407	0.509	28.3	0.1991	15.38	1/982	1/7748
SNV	Breast	FNDC1_T456I_5	HLA-C03:04	VAMPITSKA	0.986	0.9901	1.3154	429.48	0.478	33.61	1/982	1/7748
SNV	Breast	FRMD4B_E446K_7	HLA-A02:01	KLLKKVKEL	0.9559	0.7708	0.7911	92.2	0.3811	8.91	1/982	1/7748
SNV	Breast	GAB1_S367L_3	HLA-B35:01	TALDTDSSY	0.9925	0.8158	0.0229	1.44	0.0212	7.45	1/982	1/7748
SNV	Breast	GAB1_S367L_3	HLA-B15:01	TALDTDSSY	0.98	0.8292	0.2996	113.12	0.2978	7.45	1/982	1/7748
SNV	Breast	GAB1_S367L_4	HLA-B15:01	RTALDTDSSY	0.9984	0.8503	0.6599	25.13	0.1578	7.45	1/982	1/7748
SNV	Breast	GALNT10_E395K_1	HLA-B15:01	KVWMDEYAEY	0.9989	0.9427	0.8135	63.19	0.2432	97.04	1/982	1/7748
SNV	Breast	GBP3_S73Y_9	HLA-B35:01	FSLGSTVKY	0.9846	0.8089	0.0229	15.78	0.1617	125.13	1/982	1/7748
SNV	Breast	GBP3_S73Y_9	HLA-B15:01	FSLGSTVKY	0.9954	0.8618	0.1311	99.7	0.2862	125.13	1/982	1/7748
SNV	Breast	GFM2_E599K_4	HLA-B35:01	RPIKTSSVM	0.9866	0.8799	0.1404	6.74	0.1043	24.25	1/982	1/7748
SNV	Breast	GNL1_R259W_3	HLA-B35:01	FPWDPRTPQ	0.9362	0.7247	0.2421	287.07	0.419	28.39	1/982	1/7748
SNV	Breast	GORAB_S34F_2	HLA-C04:01	FFEEELRRL	0.9991	0.9152	0.0146	15.51	0.032	12.69	1/982	1/7748
SNV	Breast	GPS2_R211T_4	HLA-B15:01	QQLTAPSAF	0.9967	0.8553	0.0061	5.17	0.0526	4.67	1/982	1/7748
SNV	Breast	GPS2_R211T_5	HLA-B15:01	SQQLTAPSAF	0.9993	0.7488	0.1648	23.36	0.1525	4.67	1/982	1/7748
SNV	Breast	GPS2_R211T_1	HLA-C03:04	TAPSAFPAV	0.9168	0.9864	0.1475	441.92	0.4826	4.67	1/982	1/7748
SNV	Breast	GPX8_E174K_3	HLA-B35:01	NPKGQVVKF	0.9581	0.8098	0.1474	7.95	0.1139	59.99	1/982	1/7748
SNV	Breast	GPX8_E174K_5	HLA-C03:04	LVNPKGQVV	0.9414	0.9693	0.2095	314.64	0.4277	59.99	1/982	1/7748
SNV	Breast	GRIP1_L728F_9	HLA-B15:01	ILAINSSSF	0.9991	0.7338	0.0299	4.77	0.0496	1.67	1/982	1/7748
SNV	Breast	GRIP1_L728F_10	HLA-B15:01	RILAINSSSF	0.9994	0.8289	0.3063	381.7	0.4725	1.67	1/982	1/7748
SNV	Breast	HBP1_S96L_2	HLA-B35:01	TLDIPETTY	0.7945	0.9769	0.8508	163.98	0.3581	31.77	1/982	1/7748
SNV	Breast	HBP1_S96L_9	HLA-C03:04	RSSWNQNTL	0.9891	0.9838	0.3145	477.71	0.4952	31.77	1/982	1/7748
SNV	Breast	HEATR5B_E272Q_8	HLA-A02:01	ATFDEVLQL	0.9627	0.5166	0.3887	34.55	0.2658	14.96	1/982	1/7748
SNV	Breast	HEATR5B_E272Q_8	HLA-C03:04	ATFDEVLQL	0.9991	0.9941	0.0179	12.53	0.0966	14.96	1/982	1/7748
SNV	Breast	HEATR5B_E272Q_7	HLA-C04:01	TFDEVLQL	1	0.8122	0.0047	10.01	0.0219	14.96	1/982	1/7748
SNV	Breast	HEATR5B_E272Q_7	HLA-C04:01	TFDEVLQLM	0.9993	0.8613	0.0004	1.55	0.0032	14.96	1/982	1/7748
SNV	Breast	HEATR5B_E272Q_8	HLA-C04:01	ATFDEVLQLM	0.9989	0.8493	0.9417	141.84	0.0835	14.96	1/982	1/7748
SNV	Breast	HERC2_L2558F_1	HLA-B35:01	FSNDDYAVY	0.9684	0.7163	0.049	2.43	0.0471	10.81	1/982	1/7748
SNV	Breast	HERC2_L2558F_1	HLA-B15:01	FSNDDYAVY	0.9938	0.823	0.1735	8.84	0.0849	10.81	1/982	1/7748
SNV	Breast	HMG20B_M209I_5	HLA-B15:01	RLRKINVAF	0.9977	0.929	0.0124	2.07	0.0136	138.31	1/982	1/7748
SNV	Breast	IDE_S669F_9	HLA-B15:01	IIKEAYMRF	0.9958	0.8924	0.3093	18.83	0.1367	18.86	1/982	1/7748
SNV	Breast	IFT140_E1293K_4	HLA-B15:01	AQVKIDEY	0.9994	0.7621	0.6715	74.49	0.2594	27.01	1/982	1/7748
SNV	Breast	IFT140_E1293K_4	HLA-B15:01	AQVKIDEYQNY	0.9999	0.8387	0.5249	133.82	0.3189	27.01	1/982	1/7748
SNV	Breast	IFT140_E1293K_9	HLA-C04:01	FYDACAQVKI	0.9993	0.5826	0.1376	220.55	0.1057	27.01	1/982	1/7748
SNV	Breast	IMMT_D400Y_6	HLA-A02:01	KLSTDYLNSL	0.9574	0.6383	0.4765	103.8	0.3963	78.91	1/982	1/7748
SNV	Breast	IMMT_D400Y_9	HLA-B35:01	LADKLSTDY	0.9163	0.7664	0.3595	38.95	0.2245	78.91	1/982	1/7748
SNV	Breast	IMMT_D400Y_5	HLA-C03:04	LSTDYLNSL	0.9996	0.9856	0.1116	185.72	0.3512	78.91	1/982	1/7748
SNV	Breast	INTS7_E876Q_9	HLA-B35:01	IPIDNMTNQM	0.9969	0.9299	0.2339	8.81	0.12	24.92	1/982	1/7748
SNV	Breast	IQGAP3_S111F_1	HLA-C03:04	FAIAHIGL	1	0.9859	0.3653	311.16	0.4259	1.17	1/982	1/7748
SNV	Breast	ITGA8_E975Q_9	HLA-A02:01	ALASLVSFQV	0.9975	0.6908	0.1465	159.05	0.4681	2.23	1/982	1/7748
SNV	Breast	ITPR2_E257D_3	HLA-C04:01	EYDKKQHIF	0.9889	0.5257	0.0663	22	0.0378	11.77	1/982	1/7748
SNV	Breast	JAK2_R133P_4	HLA-A03:01	RAYPHGISR	0.9903	0.8813	0.1581	3.94	0.0396	12.47	1/982	1/7748
SNV	Breast	KALRN_D1455N_7	HLA-B35:01	VPKKANNAM	0.8325	0.9138	0.1835	6.16	0.0993	1.37	1/982	1/7748
SNV	Breast	KANSL2_L217V_1	HLA-B15:01	VLKEKKRRY	0.9004	0.8573	0.7588	324.79	0.4451	32.62	1/982	1/7748
SNV	Breast	KAT6B_L1231F_9	HLA-B15:01	NMNDDSSNF	0.9952	0.8269	0.2065	72.71	0.2571	10.45	1/982	1/7748
SNV	Breast	KIAA1328_G423E_4	HLA-A02:01	WLLETSSSI	0.9895	0.5505	0.097	44.05	0.2895	2.38	1/982	1/7748
SNV	Breast	KIF13A_R776Q_6	HLA-B15:01	RLYGKQGDPF	0.9995	0.9191	0.3693	284.63	0.4226	19.82	1/982	1/7748
SNV	Breast	KIF1C_E772Q_2	HLA-B15:01	IQALAALKM	0.9984	0.7973	0.2165	98.15	0.2848	76.81	1/982	1/7748
SNV	Breast	KRT6B_D236H_3	HLA-B15:01	RLHSELRNM	0.9944	0.9432	0.6426	408.71	0.4841	5.52	1/982	1/7748
SNV	Breast	LAMA1_E624K_5	HLA-C03:04	STQAKGLSL	0.9987	0.9742	0.1638	359.74	0.4493	1.36	1/982	1/7748
SNV	Breast	LATS2_E929Q_6	HLA-C03:04	KVINWQNTL	0.9984	0.9945	0.2131	18.28	0.1307	10.18	1/982	1/7748
SNV	Breast	LGALSL_D30N_9	HLA-A02:01	SLSSPVQANV	0.9724	0.7704	0.5972	159.51	0.4686	11.14	1/982	1/7748
SNV	Breast	LGALSL_D30N_6	HLA-B35:01	SPVQANVY	0.9597	0.875	0.279	24.91	0.1906	11.14	1/982	1/7748
SNV	Breast	LGALSL_D30N_6	HLA-B35:01	SPVQANVYF	0.9962	0.8433	0.0121	1.45	0.0215	11.14	1/982	1/7748
SNV	Breast	LGR6_P438S_1	HLA-A02:01	SLAGLGGLMHL	0.9963	0.7228	0.7085	42.34	0.2856	2.32	1/982	1/7748
SNV	Breast	LIPM_E201Q_1	HLA-B15:01	QLAQKIKMY	0.9982	0.8308	0.495	54.07	0.2263	1.48	1/982	1/7748
SNV	Breast	LIPM_E201Q_8	HLA-C03:04	IAFSTMPQL	0.9994	0.9867	0.0139	2.6	0.0274	1.48	1/982	1/7748
SNV	Breast	LRCH1_E215Q_2	HLA-B15:01	RQLNVRRNY	0.9965	0.8068	0.2165	3.26	0.031	11.22	1/982	1/7748
SNV	Breast	LRRK1_E969D_7	HLA-B35:01	FTQQTEDQY	0.85	0.8564	0.277	303.79	0.4262	6.83	1/982	1/7748
SNV	Breast	LRRK1_E969D_6	HLA-B15:01	TQQTEDQYF	0.9583	0.8115	0.6045	358.02	0.4616	6.83	1/982	1/7748
SNV	Breast	LSG1_R159Q_7	HLA-A02:01	ILTPFEQNL	0.9844	0.722	0.7351	10.91	0.1656	35.01	1/982	1/7748
SNV	Breast	LSG1_R159Q_5	HLA-B35:01	TPFEQNLDF	0.9935	0.826	0.0283	1.39	0.0198	35.01	1/982	1/7748
SNV	Breast	LSM2_R63Q_3	HLA-B35:01	FIQGSVVRY	0.9629	0.9149	0.2421	29.51	0.2023	121.18	1/982	1/7748
SNV	Breast	LSM2_R63Q_2	HLA-B15:01	IQGSVVRY	0.9996	0.8377	1.0401	230.32	0.3898	121.18	1/982	1/7748
SNV	Breast	LSM2_R63Q_3	HLA-B15:01	FIQGSVVRY	0.9996	0.8812	0.251	37.46	0.1892	121.18	1/982	1/7748
SNV	Breast	LURAP1L_E13Q_8	HLA-B35:01	LPDLRDIQL	0.9856	0.801	0.5986	60.25	0.2607	154.8	1/982	1/7748
SNV	Breast	LYST_L275F_3	HLA-C03:04	VTFNHNSPL	0.9966	0.985	0.0191	25.74	0.1566	12.73	1/982	1/7748
SNV	Breast	MAB21L1_E73K_6	HLA-A02:01	VISPTKFEV	0.983	0.7181	0.3735	269.88	0.5555	1.95	2/982	2/7748
SNV	Breast	MAB21L1_E73K_4	HLA-B35:01	SPTKFEVVL	0.9449	0.8604	0.2064	54.14	0.2511	1.95	1/982	1/7748
SNV	Breast	MAB21L1_E73K_4	HLA-B35:01	SPTKFEVVLY	0.9802	0.7928	0.2825	30.21	0.2041	1.95	1/982	1/7748
SNV	Breast	MACF1_Q4667E_4	HLA-A02:01	SINEKWVEL	0.9928	0.6722	1.2099	348.84	0.5971	13.15	1/982	1/7748
SNV	Breast	MACF1_Q4667E_4	HLA-C03:04	SINEKWVEL	0.9997	0.9896	0.348	270.97	0.4035	13.15	1/982	1/7748
SNV	Breast	MAGI3_Q686K_5	HLA-B35:01	EPIPKPMPF	0.9978	0.8794	0.0706	1.94	0.0358	30.56	1/982	1/7748
SNV	Breast	MAGI3_Q686K_1	HLA-B35:01	KPMPFPPSI	0.9253	0.8722	0.3431	302.24	0.4255	30.56	1/982	1/7748
SNV	Breast	MAGI3_Q686K_1	HLA-C03:04	KPMPFPPSI	0.9235	0.9915	1.1576	27.91	0.1615	30.56	1/982	1/7748
SNV	Breast	MAP1A_S527L_1	HLA-B35:01	LPEDLTQDF	0.9907	0.9249	0.1506	2.55	0.0497	10.33	1/982	1/7748
SNV	Breast	MAPK15_I117M_2	HLA-A02:01	SMFYQLLRA	0.8989	0.5957	0.271	317.55	0.5819	46.7	1/982	1/7748
SNV	Breast	MAPKAPK5_R113I_2	HLA-B15:01	HIISQHRHF	0.9916	0.9175	0.2722	39.35	0.1935	8.8	1/982	1/7748
SNV	Breast	MARK4_E155D_4	HLA-A03:01	RMKDKEARAK	0.9887	0.5242	0.3603	292.48	0.4159	23.02	1/982	1/7748
SNV	Breast	MDH1B_G459A_4	HLA-B35:01	VALADKIHF	0.9848	0.8712	0.1356	455.11	0.4772	5.53	1/982	1/7748
SNV	Breast	MDN1_D4806H_6	HLA-C04:01	GMDEEHSEL	0.9999	0.6393	0.0423	214.35	0.1043	6.88	1/982	1/7748
SNV	Breast	MLF1_S16F_9	HLA-C04:01	SFEDDPFFF	0.9454	0.6319	0.0765	8.14	0.0188	37.38	1/982	1/7748
SNV	Breast	MME_D490H_9	HLA-B35:01	YPDDIVSNH	0.9913	0.6095	0.499	4.75	0.0876	22.81	1/982	1/7748
SNV	Breast	MRC2_S1041L_2	HLA-A02:01	ALQRDFQWV	0.9868	0.813	0.3693	330.86	0.5885	114.25	1/982	1/7748
SNV	Breast	MROH1_R1466Q_2	HLA-B15:01	FQTASIRLF	0.9983	0.9482	0.052	33.94	0.1806	14.06	1/982	1/7748
SNV	Breast	MTA3_R151T_9	HLA-A02:01	LLADKGEITV	0.9977	0.6611	0.4625	4.27	0.0919	21.51	1/982	1/7748
SNV	Breast	MTA3_R151T_10	HLA-A02:01	TLLADKGEITV	0.9969	0.6516	0.8485	351.73	0.5984	21.51	1/982	1/7748
SNV	Breast	MTA3_R151T_4	HLA-B15:01	GEITVGPRY	0.7435	0.8153	0.8555	363.77	0.4643	21.51	1/982	1/7748
SNV	Breast	MYCN_E428K_8	HLA-B15:01	VILKKATKY	0.9866	0.8076	0.2996	229.46	0.3893	1.31	1/982	1/7748
SNV	Breast	MYCN_E428K_4	HLA-C03:04	KATKYVHSL	0.9986	0.9786	0.0561	13.8	0.1038	1.31	1/982	1/7748
SNV	Breast	MYH9_E465Q_8	HLA-C04:01	IFDLNSFQQL	0.9999	0.7713	0.0372	29.78	0.0442	451.74	1/982	2/7748
SNV	Breast	MYLK_L121F_9	HLA-B35:01	GARQVTVEF	0.9104	0.887	0.3033	338.67	0.4399	14.44	1/982	1/7748
SNV	Breast	MYLK_L121F_9	HLA-B15:01	GARQVTVEF	0.9981	0.8478	0.2672	48.54	0.2147	14.44	1/982	1/7748
SNV	Breast	MYOM1_M1014I_4	HLA-C03:04	VAAINMAGL	0.9961	0.982	0.3145	22.99	0.1498	1.26	1/982	1/7748
SNV	Breast	N4BP3_Q166E_4	HLA-C03:04	RASEARAQL	0.999	0.9823	0.0767	6.14	0.0577	32.69	1/982	1/7748
SNV	Breast	NAV1_D751N_5	HLA-A02:01	ALDSNNISL	0.9856	0.5859	0.4173	3.79	0.0785	8.05	1/982	1/7748
SNV	Breast	NAV1_D751N_5	HLA-C03:04	ALDSNNISL	0.949	0.9877	0.1599	489.68	0.4993	8.05	1/982	1/7748
SNV	Breast	NAV1_D751N_5	HLA-C04:01	ALDSNNISL	0.9999	0.681	0.0185	110.48	0.0764	8.05	1/982	1/7748
SNV	Breast	NCKAP1_L904F_9	HLA-B15:01	RLSSVDSVF	0.9977	0.8618	0.022	2.97	0.0269	16.94	1/982	1/7748
SNV	Breast	NEK4_E51K_4	HLA-C03:04	RAAKQEAQL	0.9969	0.9866	0.2189	86.97	0.26	12.87	1/982	1/7748
SNV	Breast	NFATC3_H70Y_9	HLA-B35:01	LPHHGLPSY	0.9986	0.8448	0.0015	1.14	0.0091	6.06	1/982	1/7748
SNV	Breast	NFATC3_H70Y_1	HLA-B35:01	YSSVLSPSF	0.9823	0.8401	0.062	341.39	0.4409	6.06	1/982	1/7748
SNV	Breast	NFATC3_H70Y_1	HLA-C03:04	YSSVLSPSF	0.9968	0.9887	0.1787	175.68	0.3436	6.06	1/982	1/7748
SNV	Breast	NLGN3_E526K_6	HLA-B35:01	AAHGDKVPY	0.9817	0.8823	0.0824	24.54	0.1896	1.15	1/982	1/7748
SNV	Breast	NLGN3_E526K_4	HLA-B35:01	HGDKVPYVF	0.8664	0.9159	0.4335	421.07	0.4674	1.15	1/982	1/7748
SNV	Breast	NLGN3_E526K_7	HLA-B35:01	DAAHGDKVPY	0.9626	0.7131	0.6683	181.21	0.3683	1.15	1/982	1/7748
SNV	Breast	NLGN3_E526K_6	HLA-B15:01	AAHGDKVPY	0.9992	0.9037	0.2325	40.85	0.1968	1.15	1/982	1/7748
SNV	Breast	NLGN3_E526K_4	HLA-C04:01	HGDKVPYVF	0.9999	0.7692	0.0968	349.98	0.1286	1.15	1/982	1/7748
SNV	Breast	NLRC3_E304K_5	HLA-A02:01	QMFPKDQAL	0.9546	0.5875	0.4918	124.53	0.4263	7.1	1/982	1/7748
SNV	Breast	NLRC3_E304K_5	HLA-B15:01	QMFPKDQAL	0.9879	0.96	0.251	389	0.4757	7.1	1/982	1/7748
SNV	Breast	NLRC3_E304K_5	HLA-C03:04	QMFPKDQAL	0.9958	0.9939	0.2527	65.71	0.2306	7.1	1/982	1/7748
SNV	Breast	NLRP1_M967I_6	HLA-A02:01	TLSDEIRQEL	0.9671	0.6441	0.9197	395.52	0.6237	7.37	1/982	1/7748
SNV	Breast	NLRP1_M967I_5	HLA-C03:04	LSDEIRQEL	0.9998	0.9852	0.0536	75.73	0.2455	7.37	1/982	1/7748
SNV	Breast	NME7_E190K_3	HLA-B15:01	ASKSIRALF	0.9885	0.8232	0.2233	89.21	0.276	15.62	1/982	1/7748
SNV	Breast	NPM3_F114L_7	HLA-A02:01	MLSLDDLQL	0.9725	0.6621	0.3974	33.61	0.2631	68.41	1/982	1/7748
SNV	Breast	NPM3_F114L_5	HLA-A02:01	SLDDLQLQPPV	0.9961	0.8357	0.8915	380.41	0.6151	68.41	1/982	1/7748
SNV	Breast	NPM3_F114L_1	HLA-B15:01	LQLQPPVTF	0.9949	0.9268	0.0291	3.91	0.039	68.41	1/982	1/7748
SNV	Breast	NRK_K1491N_4	HLA-C03:04	QLFNKILEM	0.9636	0.9865	0.5345	492.2	0.5001	1.96	1/982	1/7748
SNV	Breast	NRL_E70K_3	HLA-A02:01	GLKELYWLA	0.9852	0.5656	0.4392	492.57	0.6722	3.37	1/982	1/7748
SNV	Breast	NRL_E70K_7	HLA-B15:01	GTRPGLKELY	0.9995	0.9151	1.1119	423.05	0.49	3.37	1/982	1/7748
SNV	Breast	NSD1_E1974K_8	HLA-C03:04	FVNEYVGKL	0.999	0.9859	0.0717	24.26	0.1531	19.16	1/982	1/7748
SNV	Breast	NUP153_A1312P_2	HLA-B35:01	SPPSASPAF	0.9702	0.845	0.0629	5.07	0.0911	20.49	1/982	1/7748
SNV	Breast	OXSM_S75L_3	HLA-B35:01	IVLLVGEEY	0.9351	0.9052	0.1941	177.89	0.3664	22.37	1/982	1/7748
SNV	Breast	OXSM_S75L_3	HLA-B15:01	IVLLVGEEY	0.984	0.8637	0.2963	182.09	0.3591	22.37	1/982	1/7748
SNV	Breast	PBDC1_D32N_1	HLA-B35:01	NPDIEMAWAM	0.9843	0.928	0.7084	382.66	0.4553	100.48	1/982	1/7748
SNV	Breast	PBDC1_D32N_4	HLA-C03:04	YGNNPDIEM	0.9991	0.9884	0.384	40.99	0.1867	100.48	1/982	1/7748
SNV	Breast	PCDHB2_D239N_4	HLA-B35:01	DINNNVPEF	0.9432	0.8764	0.6987	50.29	0.245	1.18	1/982	1/7748
SNV	Breast	PCDHGA10_E41Q_7	HLA-C03:04	ISYSIPQEL	0.9998	0.9924	0.0231	2.12	0.0188	2.29	1/982	1/7748
SNV	Breast	PCDHGC3_S356F_9	HLA-B35:01	NAPEITVTF	0.9921	0.9246	0.0824	4.34	0.082	11.71	1/982	1/7748
SNV	Breast	PCDHGC3_S356F_8	HLA-B35:01	APEITVTFVY	0.9895	0.8713	0.3276	74.44	0.2798	11.71	1/982	1/7748
SNV	Breast	PCDHGC3_S356F_9	HLA-C03:04	NAPEITVTF	0.9973	0.9919	0.1008	110.61	0.285	11.71	1/982	1/7748
SNV	Breast	PCNA_E3Q_7	HLA-A03:01	RLVQGSILK	0.9989	0.5399	0.0399	2.16	0.017	169.69	3/982	3/7748
SNV	Breast	PCNA_E3Q_7	HLA-A03:01	RLVQGSILK	0.9989	0.5399	0.0399	2.16	0.017	169.69	3/982	3/7748
SNV	Breast	PCNA_E3Q_7	HLA-A03:01	RLVQGSILK	0.9989	0.5399	0.0399	2.16	0.017	169.69	3/982	3/7748
SNV	Breast	PCNT_D80Y_3	HLA-B35:01	TPYGAGGAF	0.987	0.9128	0.0315	1.28	0.0168	9	1/982	1/7748
SNV	Breast	PCNT_D80Y_4	HLA-B35:01	DTPYGAGGAF	0.8806	0.8303	1.922	290.27	0.4204	9	1/982	1/7748
SNV	Breast	PDE4A_I538M_9	HLA-B15:01	RQSLRKMVM	0.9884	0.8733	0.5175	277.3	0.4182	10.2	1/982	1/7748
SNV	Breast	PDE6B_S623L_2	HLA-A02:01	SLILERHHL	0.8637	0.5945	0.4853	314.17	0.5801	10.45	1/982	1/7748
SNV	Breast	PEBP4_Q157H_3	HLA-A02:01	YLHEGKVISL	0.9944	0.7072	0.5716	2.02	0.0456	1.28	1/982	1/7748
SNV	Breast	PEBP4_Q157H_3	HLA-A02:01	YLHEGKVISLL	0.9962	0.6613	1.9188	66.97	0.34	1.28	1/982	1/7748
SNV	Breast	PELP1_L228F_5	HLA-C03:04	RVDAFSPQL	0.9889	0.9846	0.1275	35.62	0.1764	41.56	1/982	1/7748
SNV	Breast	PELP1_L228F_5	HLA-C04:01	RVDAFSPQL	1	0.9235	0.1268	306.91	0.1212	41.56	1/982	1/7748
SNV	Breast	PELP1_L228F_2	HLA-C04:01	AFSPQLQQL	0.6628	0.9216	0.0385	363.08	0.1313	41.56	1/982	1/7748
SNV	Breast	PEX5_E224K_5	HLA-B15:01	RQIGKGQVSL	0.9993	0.8312	0.6426	127.08	0.3121	28.9	1/982	1/7748
SNV	Breast	PGGT1B_P116T_7	HLA-B35:01	APGTAHTY	0.9639	0.8465	0.3714	261.86	0.4075	10.22	1/982	1/7748
SNV	Breast	PGGT1B_P116T_8	HLA-B35:01	KAPGTAHTY	0.9188	0.7936	0.182	37.07	0.2205	10.22	1/982	1/7748
SNV	Breast	PGGT1B_P116T_8	HLA-B15:01	KAPGTAHTY	0.9962	0.8344	0.2281	41.68	0.1986	10.22	1/982	1/7748
SNV	Breast	PGGT1B_P116T_9	HLA-B15:01	SKAPGTAHTY	0.9809	0.7751	0.2886	132.35	0.3174	10.22	1/982	1/7748
SNV	Breast	PGGT1B_P116T_2	HLA-C03:04	HTYDSGHIAM	0.9996	0.9774	0.0668	110.18	0.2846	10.22	1/982	1/7748
SNV	Breast	PGGT1B_P116T_1	HLA-C04:01	TYDSGHIAM	0.9991	0.6933	0.0034	1.86	0.0045	10.22	1/982	1/7748
SNV	Breast	PGGT1B_P116T_2	HLA-C04:01	HTYDSGHIAM	0.9974	0.6766	0.5906	55.15	0.0578	10.22	1/982	1/7748
SNV	Breast	PIAS3_K230N_6	HLA-A02:01	YLPPTNNGA	0.9072	0.5859	0.5616	235.58	0.5335	51.7	1/982	1/7748
SNV	Breast	PIH1D2_H199N_4	HLA-B35:01	NPDNFPQLL	0.9405	0.9338	0.5386	48.41	0.242	11.24	1/982	1/7748
SNV	Breast	PIK3C3_H370Y_9	HLA-B35:01	DSLELLSSY	0.9686	0.8103	0.1238	24.58	0.1897	9.93	1/982	1/7748
SNV	Breast	PIK3C3_H370Y_3	HLA-C03:04	SSYYTNPTV	0.9512	0.9907	1.1986	253.66	0.3939	9.93	1/982	1/7748
SNV	Breast	PIK3CA_R88Q_7	HLA-C04:01	FFDETRQL	1	0.7289	0.001	4.36	0.0109	10.22	1/982	16/7748
SNV	Breast	PIK3CA_R88Q_7	HLA-C04:01	FFDETRQLC	0.9978	0.6635	0.0251	117.39	0.0778	10.22	1/982	16/7748
SNV	Breast	PIK3CA_R88Q_7	HLA-C04:01	FFDETRQLCDL	0.9999	0.8599	0.1088	241.48	0.1099	10.22	1/982	16/7748
SNV	Breast	PITPNM2_A711V_8	HLA-A02:01	TMLDGTGVL	0.9334	0.5869	0.3197	289.77	0.567	1.79	1/982	1/7748
SNV	Breast	PITPNM2_A711V_1	HLA-A02:01	VLGRFDFEI	0.9908	0.5859	0.3433	68.43	0.3427	1.79	1/982	1/7748
SNV	Breast	PITPNM2_A711V_8	HLA-C03:04	TMLDGTGVL	0.9868	0.994	0.4309	61.53	0.2236	1.79	1/982	1/7748
SNV	Breast	PKNOX1_S86F_9	HLA-B15:01	TQGSEGTTF	0.9721	0.9432	0.1451	10.9	0.102	10.19	1/982	1/7748
SNV	Breast	PKNOX1_S86F_10	HLA-B15:01	STQGSEGTTF	0.9977	0.9232	0.3957	35.78	0.1852	10.19	1/982	1/7748
SNV	Breast	PLBD2_S308Y_9	HLA-B35:01	SSYPGTIFY	0.9921	0.6622	0.0824	6.56	0.1027	43.92	1/982	1/7748
SNV	Breast	PLBD2_S308Y_9	HLA-B15:01	SSYPGTIFY	0.997	0.6685	0.1295	4.91	0.0508	43.92	1/982	1/7748
SNV	Breast	PLBD2_S308Y_9	HLA-C03:04	SSYPGTIFY	0.8034	0.9443	0.7765	490.89	0.4997	43.92	1/982	1/7748
SNV	Breast	PLCB3_D206H_5	HLA-C03:04	SIRPHEFSL	0.995	0.9851	0.693	476.97	0.495	29.81	1/982	1/7748
SNV	Breast	PLCB3_D206H_3	HLA-C03:04	RPHEFSLEI	0.7737	0.9876	1.1008	499.44	0.5027	29.81	1/982	1/7748
SNV	Breast	PLEKHA3_L295F_6	HLA-B35:01	ESEDTFPSF	0.7176	0.8796	0.6394	156.07	0.353	5.12	1/982	1/7748
SNV	Breast	PLEKHA3_L295F_9	HLA-B15:01	KQSESEDTF	0.9967	0.7544	0.1136	38.65	0.1919	5.12	1/982	1/7748
SNV	Breast	PLXNA4_D382H_4	HLA-A03:01	GTLHLAWLK	0.9967	0.6381	0.0246	88.07	0.2697	1.09	1/982	1/7748
SNV	Breast	POGK_V266M_2	HLA-A02:01	RMAEYVRYM	0.9877	0.5788	0.3297	10.79	0.1647	34.66	1/982	1/7748
SNV	Breast	POGK_V266M_7	HLA-A02:01	ALVDQRMAEYV	0.9983	0.5104	1.1885	228.69	0.5287	34.66	1/982	1/7748
SNV	Breast	POGK_V266M_6	HLA-B35:01	LVDQRMAEY	0.9504	0.7889	0.6775	49.12	0.2431	34.66	1/982	1/7748
SNV	Breast	POGK_V266M_2	HLA-B15:01	RMAEYVRY	0.9994	0.9336	1.5528	77	0.2624	34.66	1/982	1/7748
SNV	Breast	POGK_V266M_2	HLA-B15:01	RMAEYVRYM	0.9949	0.9001	0.3957	20.6	0.1433	34.66	1/982	1/7748
SNV	Breast	POGK_V266M_7	HLA-B15:01	ALVDQRMAEY	0.9999	0.8087	0.3336	12.24	0.1089	34.66	1/982	1/7748
SNV	Breast	POGK_V266M_2	HLA-C03:04	RMAEYVRYM	0.9523	0.9862	1.8029	107.2	0.2817	34.66	1/982	2/7748
SNV	Breast	PREX1_F485L_3	HLA-B15:01	HQLKNEQVM	0.9958	0.7775	0.3871	432.85	0.4939	38.75	1/982	1/7748
SNV	Breast	PREX1_F485L_2	HLA-B15:01	QLKNEQVMY	0.9999	0.7733	0.3381	8.79	0.0845	38.75	1/982	1/7748
SNV	Breast	PREX1_F485L_3	HLA-B15:01	HQLKNEQVMY	0.9996	0.7422	0.259	7.99	0.0771	38.75	1/982	1/7748
SNV	Breast	PRICKLE2_L593V_3	HLA-B15:01	GTVNSSMQF	0.99	0.8944	0.6342	52.51	0.2232	26.43	1/982	1/7748
SNV	Breast	PRKAB2_H135Y_3	HLA-A02:01	WVYDPSEPV	0.9053	0.7254	0.2276	20.28	0.2186	15.86	1/982	1/7748
SNV	Breast	PRKAB2_H135Y_9	HLA-B35:01	FFVDGQWVY	0.9274	0.8606	0.4432	122.9	0.3285	15.86	1/982	1/7748
SNV	Breast	PRKAB2_H135Y_3	HLA-C03:04	WVYDPSEPV	0.9777	0.9947	0.693	60.58	0.222	15.86	1/982	1/7748
SNV	Breast	PRKAB2_H135Y_2	HLA-C04:01	VYDPSEPVV	0.9979	0.9537	0.0056	4.79	0.0119	15.86	1/982	1/7748
SNV	Breast	PRKDC_L1220V_5	HLA-B15:01	GVSFVINTF	0.9817	0.9075	0.1084	169.79	0.35	28.08	1/982	1/7748
SNV	Breast	PRRT3_L614M_9	HLA-C03:04	CAWGAAVAM	0.9991	0.9943	0.0592	388.74	0.4619	16.75	1/982	1/7748
SNV	Breast	PRRT3_L614M_6	HLA-C03:04	GAAVAMGTL	0.9969	0.9906	0.86	230.25	0.3806	16.75	1/982	1/7748
SNV	Breast	PTPRF_S1758C_6	HLA-B35:01	WPAERCARY	0.9964	0.663	0.0516	6.46	0.1018	165.9	1/982	1/7748
SNV	Breast	PUS10_S153F_9	HLA-B15:01	SVSFPPQLF	0.8593	0.8285	0.2754	279.94	0.4198	3.87	1/982	1/7748
SNV	Breast	PUS10_S153F_8	HLA-C03:04	VSFPPQLFV	0.9678	0.9734	0.2805	254.1	0.3941	3.87	1/982	1/7748
SNV	Breast	PUS10_S153F_1	HLA-C03:04	FVREHAAWL	0.9413	0.9925	0.248	380.55	0.4584	3.87	1/982	1/7748
SNV	Breast	RBM38_E55Q_7	HLA-B15:01	SLRKYFQGF	0.9759	0.9355	0.0609	44.91	0.2063	36.82	1/982	1/7748
SNV	Breast	RETSAT_L599V_9	HLA-A02:01	NLYSDLKNV	0.9765	0.8161	0.4818	7.18	0.1314	70.65	1/982	1/7748
SNV	Breast	RIN1_L542V_4	HLA-A02:01	FLPVLSLVL	0.9701	0.7805	0.363	404.44	0.6287	7.2	1/982	1/7748
SNV	Breast	RIN1_L542V_8	HLA-C03:04	GADEFLPVL	0.9981	0.9919	0.0767	73.31	0.2421	7.2	1/982	1/7748
SNV	Breast	SCD_S309C_6	HLA-B35:01	FPYDYCASEY	0.9995	0.7396	0.0416	1.28	0.0167	91.22	1/982	1/7748
SNV	Breast	SDR16C5_L67V_8	HLA-C03:04	FARLGSVVV	0.937	0.9937	0.1638	46.59	0.196	14.56	1/982	1/7748
SNV	Breast	SEPT7_E50Q_8	HLA-B15:01	KSVKRGFQF	0.8484	0.5412	0.3633	200.9	0.3719	41.6	1/982	1/7748
SNV	Breast	SH3KBP1_S85F_9	HLA-B35:01	VPSGNSLLF	0.9929	0.833	0.016	1.49	0.0226	32.2	1/982	1/7748
SNV	Breast	SHQ1_E486K_4	HLA-B35:01	SPSKTVSSL	0.9531	0.7812	0.1219	54.07	0.2509	12.8	1/982	1/7748
SNV	Breast	SHROOM4_H990D_4	HLA-B35:01	EMADSKTSF	0.8784	0.8851	0.4875	166.75	0.3598	1.98	1/982	1/7748
SNV	Breast	SHROOM4_H990D_4	HLA-B15:01	EMADSKTSF	0.9953	0.8555	0.139	23.33	0.1524	1.98	1/982	1/7748
SNV	Breast	SHROOM4_H990D_5	HLA-B15:01	REMADSKTSF	0.9994	0.9118	0.5867	5.78	0.0567	1.98	1/982	1/7748
SNV	Breast	SHROOM4_P748L_9	HLA-C03:04	AAMEGPSNL	0.9997	0.9898	0.0179	1.39	0.0076	1.98	1/982	1/7748
SNV	Breast	SLC12A4_S573F_1	HLA-A02:01	FLDMVAPIL	0.9907	0.6501	0.2188	2.6	0.0572	16.77	1/982	1/7748
SNV	Breast	SLC12A4_S573F_1	HLA-C04:01	FLDMVAPIL	0.9997	0.9269	0.0553	78.74	0.0678	16.77	1/982	1/7748
SNV	Breast	SMARCA5_P877A_3	HLA-B35:01	KTAEEVIEY	0.954	0.937	0.5128	138.5	0.3408	49.83	1/982	1/7748
SNV	Breast	SMARCA5_P877A_3	HLA-B15:01	KTAEEVIEY	0.9984	0.9396	0.3598	8.84	0.085	49.83	1/982	1/7748
SNV	Breast	SP140_L182F_9	HLA-B35:01	DIAVPQEAF	0.957	0.9387	0.4365	137.07	0.3397	4.84	1/982	1/7748
SNV	Breast	SPECC1_D1051N_3	HLA-B35:01	RPNWQSVMQY	0.9788	0.8377	0.3565	89.97	0.297	12.86	1/982	1/7748
SNV	Breast	SPEN_P2612S_1	HLA-A02:01	SVIAPKITSV	0.9593	0.6414	0.8958	435.58	0.645	17.97	1/982	1/7748
SNV	Breast	SPIDR_Q239E_3	HLA-B35:01	TPEKPTAKF	0.9852	0.9357	0.1918	6.46	0.1018	22.7	1/982	1/7748
SNV	Breast	SPSB1_R148W_8	HLA-C04:01	GWDLGRNWL	0.9772	0.8936	0.1289	139.77	0.083	50.46	1/982	1/7748
SNV	Breast	SRPK2_E235K_5	HLA-B15:01	RMAAKATEW	0.904	0.9334	0.5288	196.15	0.3688	21.72	1/982	1/7748
SNV	Breast	SSBP2_Q349H_4	HLA-B35:01	NPFHSESY	0.9874	0.7496	0.279	30.59	0.2051	4.24	1/982	1/7748
SNV	Breast	SSBP2_Q349H_6	HLA-B15:01	FLNPFHSESY	1	0.8883	0.2065	40.43	0.1959	4.24	1/982	1/7748
SNV	Breast	SSH2_E1349K_4	HLA-B35:01	YAKKFGSSQQY	0.9923	0.8857	1.5653	298.05	0.4238	10.52	1/982	1/7748
SNV	Breast	SSH2_E1349K_2	HLA-B15:01	KKFGSSQQY	0.7415	0.8962	0.4261	199.51	0.371	10.52	1/982	1/7748
SNV	Breast	STAG2_E408K_3	HLA-B35:01	TAKDCENVY	0.965	0.8823	0.1069	22.53	0.184	26.23	1/982	1/7748
SNV	Breast	STAT2_E831K_7	HLA-B15:01	GQNTVDKVY	0.9995	0.7002	0.259	2.54	0.0217	94.63	1/982	1/7748
SNV	Breast	STXBP2_S375F_2	HLA-C04:01	GFDAEGEKI	0.9969	0.826	0.0281	193.48	0.0993	38.22	1/982	1/7748
SNV	Breast	SWI5_R50T_2	HLA-C03:04	VTVPGPVHL	0.9997	0.9942	0.009	2.96	0.0312	53.14	1/982	1/7748
SNV	Breast	TBC1D9_E474Q_4	HLA-B35:01	SPEQFNPKL	0.9446	0.6434	0.5986	452.22	0.4764	215.55	1/982	1/7748
SNV	Breast	TDRD7_L1091M_6	HLA-A02:01	FMSEYMIEL	0.9991	0.503	0.0022	1.18	0.0112	16.61	1/982	1/7748
SNV	Breast	TDRD7_L1091M_6	HLA-C03:04	FMSEYMIEL	0.9978	0.992	0.0912	27.1	0.1597	16.61	1/982	1/7748
SNV	Breast	TENM2_S1299L_10	HLA-A02:01	YLAVDPVSGL	0.9886	0.6738	0.4143	4.96	0.1037	1.17	1/982	1/7748
SNV	Breast	TENM2_S1299L_9	HLA-C03:04	LAVDPVSGL	0.9997	0.9829	0.0104	2.83	0.03	1.17	1/982	1/7748
SNV	Breast	TENM2_S1299L_8	HLA-C03:04	AVDPVSGLL	0.9966	0.9809	0.0984	202.21	0.3628	1.17	1/982	1/7748
SNV	Breast	TENM2_S1299L_8	HLA-C04:01	AVDPVSGLL	0.9998	0.966	0.0579	111.99	0.0767	1.17	1/982	1/7748
SNV	Breast	THSD7A_R1310Q_2	HLA-B15:01	IQRRTVTQPF	0.9998	0.57	0.5559	161.29	0.3433	1.2	1/982	1/7748
SNV	Breast	TJP2_D753Y_7	HLA-B35:01	LANELPYWF	0.9802	0.8527	0.4542	240.5	0.3973	28.58	1/982	1/7748
SNV	Breast	TNFAIP3_L12F_9	HLA-B35:01	QVLPQALYF	0.908	0.8572	0.291	318.01	0.432	27.42	1/982	1/7748
SNV	Breast	TNFAIP3_L12F_9	HLA-B15:01	QVLPQALYF	0.9323	0.7381	0.2448	312.21	0.4384	27.42	1/982	1/7748
SNV	Breast	TNXB_R808K_1	HLA-B15:01	KGLAPGQEY	0.9768	0.9582	0.5596	231.25	0.3903	1.75	1/982	1/7748
SNV	Breast	TRABD2A_F55L_2	HLA-B15:01	YLFGTIHVPY	0.9997	0.7955	0.3756	188.77	0.3638	1.15	1/982	1/7748
SNV	Breast	TRABD2A_F55L_8	HLA-C04:01	KRDPPSYLF	0.9581	0.7239	0.224	50.52	0.056	1.15	1/982	1/7748
SNV	Breast	TRAF7_R208Q_5	HLA-B35:01	EVDPQGCPF	0.8965	0.5504	0.3751	175.31	0.3649	72.53	1/982	1/7748
SNV	Breast	TRAM1_D79Y_9	HLA-B15:01	SLYYYGIKY	0.9758	0.6285	0.3566	16.56	0.1273	146.87	1/982	1/7748
SNV	Breast	TRAM1_D79Y_4	HLA-B15:01	GIKYLATVF	0.9977	0.8277	0.4875	111.03	0.2961	146.87	1/982	1/7748
SNV	Breast	TRAPPC12_V333M_2	HLA-A02:01	FMDKENLTM	0.9894	0.5487	0.2794	2.98	0.0653	15.55	1/982	1/7748
SNV	Breast	TRAPPC12_V333M_2	HLA-C03:04	FMDKENLTM	0.9957	0.9919	0.044	35.7	0.1766	15.55	1/982	1/7748
SNV	Breast	TRAPPC12_V333M_2	HLA-C04:01	FMDKENLTM	0.9998	0.8057	0.0066	20.2	0.0364	15.55	1/982	1/7748
SNV	Breast	TRAPPC12_V333M_3	HLA-C04:01	VFMDKENLTM	0.9989	0.8016	0.3415	73.97	0.0658	15.55	1/982	1/7748
SNV	Breast	TRIM33_E984K_1	HLA-B35:01	KPVPASIPNY	0.9627	0.6905	0.1624	16.55	0.1646	12.89	1/982	1/7748
SNV	Breast	TRIM33_E984K_1	HLA-B35:01	KPVPASIPNYY	0.99	0.6699	0.2446	138.96	0.3411	12.89	1/982	1/7748
SNV	Breast	TRIM33_E984K_3	HLA-B15:01	FQKPVPASI	0.9969	0.9557	0.1721	187.66	0.363	12.89	1/982	1/7748
SNV	Breast	TRIM33_E984K_3	HLA-C03:04	FQKPVPASI	0.9588	0.9922	0.3364	154.45	0.3259	12.89	1/982	1/7748
SNV	Breast	TULP3_V312I_9	HLA-C03:04	AAISYETNI	0.9982	0.9895	0.501	180.64	0.3474	24.04	1/982	1/7748
SNV	Breast	TULP3_V312I_6	HLA-C04:01	SYETNILGF	0.6282	0.7854	0.2106	43.69	0.0531	24.04	1/982	1/7748
SNV	Breast	UBR5_S1875F_9	HLA-B35:01	HPNHPLHAF	0.9991	0.6666	0.0121	1.1	0.0063	21.88	1/982	1/7748
SNV	Breast	UNC93B1_E96K_8	HLA-C04:01	HYDETYRKV	0.9994	0.686	0.0064	8.87	0.0202	34.49	1/982	1/7748
SNV	Breast	URB2_S303L_6	HLA-A02:01	SVVANLVAL	0.9368	0.5067	0.6827	406.19	0.6296	8.46	1/982	1/7748
SNV	Breast	URB2_S303L_4	HLA-B35:01	VANLVALLY	0.9939	0.8563	0.1035	30.76	0.2056	8.46	1/982	1/7748
SNV	Breast	URB2_S303L_6	HLA-C03:04	SVVANLVAL	0.9995	0.9894	0.0545	4.98	0.0497	8.46	1/982	1/7748
SNV	Breast	URB2_S303L_5	HLA-C03:04	VVANLVALL	0.998	0.9863	0.5345	292.11	0.4156	8.46	1/982	1/7748
SNV	Breast	URI1_S331F_9	HLA-B35:01	EALGVGDNF	0.9379	0.7334	0.382	10.82	0.1349	45.57	1/982	1/7748
SNV	Breast	USO1_E402Q_4	HLA-B15:01	GQGQIVSTL	0.9895	0.706	0.5955	421.24	0.4892	52.83	1/982	1/7748
SNV	Breast	USP9X_E2039K_8	HLA-A02:01	HLLPEAEKI	0.9697	0.8388	0.8226	52.67	0.3091	32.76	1/982	1/7748
SNV	Breast	USP9X_E2039K_6	HLA-B35:01	LPEAEKITM	0.9969	0.9678	0.218	2.33	0.045	32.76	1/982	1/7748
SNV	Breast	UTRN_Q1651E_6	HLA-A02:01	TLMNHENQL	0.9905	0.5285	0.7525	16.4	0.2006	16.08	1/982	1/7748
SNV	Breast	VARS2_Q532E_4	HLA-C03:04	WGHEIPAYL	0.9948	0.9846	0.5709	85.51	0.2582	23.31	1/982	1/7748
SNV	Breast	VPS13B_Q2387H_3	HLA-B15:01	ELHKVFVAF	0.9844	0.8573	0.0968	278.69	0.4191	5.96	1/982	1/7748
SNV	Breast	VPS13B_Q2387H_6	HLA-C04:01	YWDELHKV	0.9999	0.88	0.0213	59.33	0.0592	5.96	1/982	1/7748
SNV	Breast	VPS13B_Q2387H_6	HLA-C04:01	YWDELHKVF	0.9982	0.6368	0.0061	1.61	0.0034	5.96	1/982	1/7748
SNV	Breast	VPS13B_Q2387H_6	HLA-C04:01	YWDELHKVFV	0.9992	0.7901	0.1579	94.41	0.0727	5.96	1/982	1/7748
SNV	Breast	ZBTB10_A413T_2	HLA-C03:04	ATVQGFSVI	0.9813	0.9829	0.5072	442.01	0.4827	4.92	1/982	1/7748
SNV	Breast	ZBTB10_A413T_1	HLA-C03:04	TVQGFSVIL	0.9972	0.9871	0.5345	412.86	0.4716	4.92	1/982	1/7748
SNV	Breast	ZBTB40_H882Y_9	HLA-B15:01	TQASALAYY	0.9996	0.6489	0.0115	1.74	0.0088	17.58	1/982	1/7748
SNV	Breast	ZBTB40_H882Y_10	HLA-B15:01	FTQASALAYY	0.9992	0.8163	0.5725	221.36	0.3846	17.58	1/982	1/7748
SNV	Breast	ZBTB7A_L453P_4	HLA-C04:01	NYDPKNHM	0.9999	0.6105	0.0251	369.53	0.1326	40.14	1/982	1/7748
SNV	Breast	ZBTB7A_L453P_4	HLA-C04:01	NYDPKNHMRV	0.9945	0.6621	0.1816	122.1	0.0787	40.14	1/982	1/7748
SNV	Breast	ZEB2_E609D_5	HLA-A02:01	KMNEDIKAV	0.9949	0.746	0.292	2.39	0.0536	6.24	1/982	1/7748
SNV	Breast	ZEB2_E609D_8	HLA-A02:01	YLCKMNEDIKA	0.9835	0.6092	1.3789	399.12	0.6257	6.24	1/982	1/7748
SNV	Breast	ZFPM2_E285K_10	HLA-A03:01	RQREAAPVSK	0.9972	0.5118	0.5687	467.74	0.4939	1.67	1/982	1/7748
SNV	Breast	ZFX_S368F_9	HLA-B35:01	WAAAYGNNF	0.9838	0.8952	0.0747	24.24	0.1888	16.82	1/982	1/7748
SNV	Breast	ZFX_S368F_9	HLA-C03:04	WAAAYGNNF	0.9903	0.9905	0.6288	186.89	0.352	16.82	1/982	1/7748
SNV	Breast	ZNF225_H222Y_9	HLA-B15:01	NQSSHLQIY	0.9996	0.6528	0.0464	4.69	0.0486	3.12	1/982	1/7748
SNV	Breast	ZNF367_E273K_4	HLA-B35:01	AAAKWLARY	0.9846	0.9391	0.3005	265.55	0.4092	1.73	1/982	1/7748
SNV	Breast	ZNF367_E273K_4	HLA-B15:01	AAAKWLARY	0.9907	0.9702	0.269	55.31	0.2288	1.73	1/982	1/7748
SNV	Breast	ZNF501_G242A_5	HLA-B15:01	RIHTAEKPY	0.9981	0.8561	0.1275	35.42	0.1843	5.3	1/982	1/7748
SNV	Breast	ZNF667_R121L_9	HLA-C03:04	SAQQKAPTL	0.9996	0.982	0.0624	14.22	0.1068	1.13	1/982	1/7748
SNV	Breast	ZNF844_M382I_5	HLA-C04:01	RFEDIKELTL	0.9997	0.8575	0.0815	206.04	0.1025	15.51	1/982	1/7748
SNV	Breast	ZNF878_P155S_6	HLA-C03:04	KAFRFSSSV	0.914	0.9787	0.2614	167.65	0.3372	1.06	1/982	1/7748
SNV	Breast	FMNL3_L306M_6	HLA-B15:03	HRFEKMMEY	0.5081	0.9355	0.2464	1.67	0.0174	3.98	1/982	1/7748
SNV	Breast	GNAI2_Y297H_4	HLA-B15:03	ANKHDEAASY	0.934	0.7376	1.2616	20.52	0.2643	103.62	1/982	1/7748
SNV	Breast	TGFB3_S49R_8	HLA-A30:01	AIRGQILRK	0.9953	0.8343	0.076	46.2	0.0228	147.51	1/982	1/7748
SNV	Breast	USP53_E90K_8	HLA-A30:01	AQFQHSRKK	0.9731	0.7491	0.2691	499.5	0.1758	11.05	1/982	1/7748
SNV	Breast	USP53_E90K_6	HLA-B15:03	FQHSRKKAL	0.5616	0.6055	0.1559	108.48	0.5673	11.05	1/982	1/7748
SNV	Breast	ZNF853_A21S_6	HLA-B15:03	MEVGPSTETF	0.9819	0.8918	0.4386	21.28	0.2699	7.48	1/982	1/7748
SNV	Breast	LRBA_V586F_5	HLA-B35:01	TPAKFQLML	0.9005	0.7809	0.314	112.83	0.3198	63.52	1/982	1/7748
SNV	Breast	LRBA_V586F_5	HLA-B35:01	TPAKFQLMLY	0.9914	0.6996	0.205	95.88	0.3031	63.52	1/982	1/7748
SNV	Breast	LRBA_V586F_5	HLA-B35:02	TPAKFQLML	0.715	0.93	0.16	17.73	0.0414	63.52	1/982	1/7748
SNV	Breast	LRP2_D1987A_7	HLA-A26:01	EVIERVAKA	0.9873	0.7302	0.3406	104.35	0.1258	27.86	1/982	1/7748
SNV	Breast	ARRDC4_M336T_7	HLA-B15:01	SQFSMDTSW	0.9845	0.9416	0.348	47.03	0.2113	22.1	1/982	1/7748
SNV	Breast	ARRDC4_M336T_4	HLA-C14:02	SMDTSWLTL	0.9601	0.9583	0.2138	100.96	0.505	22.1	1/982	1/7748
SNV	Breast	B4GAT1_M270I_5	HLA-C07:02	RRMPINKNEL	0.9835	0.876	0.1675	165.71	0.248	51.4	1/982	1/7748
SNV	Breast	B4GAT1_M270I_4	HLA-C14:02	RMPINKNEL	0.7148	0.9418	0.5491	173.06	0.6482	51.4	1/982	1/7748
SNV	Breast	C3orf38_H229L_3	HLA-B51:01	SPLGLVMV	0.9957	0.733	0.3439	128.31	0.2537	24.76	1/982	1/7748
SNV	Breast	C3orf38_H229L_5	HLA-C14:02	ASSPLGLVM	0.9891	0.9806	0.7246	236.04	0.7575	24.76	1/982	1/7748
SNV	Breast	FAM102A_E109V_11	HLA-A02:01	KLGFADLNLAV	0.9936	0.6855	1.8382	71.42	0.3482	127.88	1/982	1/7748
SNV	Breast	FAM102A_E109V_8	HLA-C14:02	FADLNLAVF	0.9987	0.9595	0.2474	93.38	0.4857	127.88	1/982	1/7748
SNV	Breast	MGA_K2512E_4	HLA-A02:01	VVLEKLEYI	0.988	0.7235	0.4938	14.93	0.1923	15.21	1/982	1/7748
SNV	Breast	MRPS18B_R89W_7	HLA-A31:01	GGVPPQWTR	0.8378	0.8984	0.4953	156.62	0.2674	161.24	1/982	1/7748
SNV	Breast	SDR16C5_L31F_3	HLA-A02:01	ALFPKPRKNV	0.9206	0.8133	1.2589	458.22	0.6562	4.97	1/982	1/7748
SNV	Breast	SYDE2_N289S_2	HLA-A31:01	RSWLYQSTLR	0.9877	0.5661	0.2018	189.9	0.2885	6.29	1/982	1/7748
SNV	Breast	TBC1D12_T699S_4	HLA-A31:01	LFRSGLGILR	0.9755	0.7584	0.4126	220.2	0.3061	16.94	1/982	1/7748
SNV	Breast	WDR91_M234V_9	HLA-A02:01	KLPPYVSNV	0.9971	0.8578	0.0751	1.49	0.0201	9.13	1/982	1/7748
SNV	Breast	ZFHX4_G980V_9	HLA-A02:01	QLVAHIKEV	0.9908	0.7247	0.4173	66.92	0.3399	4.3	1/982	1/7748
SNV	Breast	ZNF541_P811L_8	HLA-A02:01	NIYRLPHLV	0.9202	0.5363	0.581	433.09	0.6438	1.04	1/982	1/7748
SNV	Breast	ARHGAP5_S516N_3	HLA-C08:02	KMNEIHTVL	0.9935	0.9749	0.8151	199.61	0.0981	28.91	1/982	1/7748
SNV	Breast	CECR2_V450I_2	HLA-B58:01	VIKAHKDSW	0.9057	0.9427	0.3085	143.09	0.4434	1.1	1/982	1/7748
SNV	Breast	CUL7_R384W_9	HLA-B58:01	TLQPGMRVW	0.9625	0.9919	0.2635	13.96	0.1671	32.44	1/982	1/7748
SNV	Breast	CUL7_R384W_10	HLA-B58:01	DTLQPGMRVW	0.9849	0.9883	0.407	90.55	0.3797	32.44	1/982	1/7748
SNV	Breast	EXT2_S53L_6	HLA-B58:01	HSIESLNDW	0.9991	0.9369	0.0566	1.41	0.016	56.32	1/982	1/7748
SNV	Breast	FAT1_T2261M_3	HLA-A02:05	SLMGAHAEV	0.9987	0.8713	0.0371	7.94	0.0659	12.68	1/982	1/7748
SNV	Breast	KPNA5_D98N_6	HLA-B58:01	FSNNANQQL	0.7375	0.7694	0.6346	471.43	0.6488	5.24	1/982	1/7748
SNV	Breast	KPNA5_D98N_6	HLA-C08:02	FSNNANQQL	0.9993	0.9557	0.0701	355.41	0.12	5.24	1/982	1/7748
SNV	Breast	PLXNA4_D1632N_8	HLA-C07:01	IRYTGSPNSL	0.9984	0.6737	0.0375	184.69	0.1129	1.14	1/982	1/7748
SNV	Breast	PPFIBP2_S713L_4	HLA-B58:01	LSPLEVVQW	0.9971	0.9825	0.0747	7.55	0.1214	25.49	1/982	1/7748
SNV	Breast	PRMT9_D406N_4	HLA-B58:01	GILNAIMVW	0.9576	0.9913	0.1804	10.41	0.1437	7.47	1/982	1/7748
SNV	Breast	ZNF91_S895L_7	HLA-B58:01	KAFIWSLTL	0.9681	0.869	0.053	104.68	0.3988	12.55	1/982	1/7748
SNV	Breast	ARC_R125C_9	HLA-B44:03	REVFYRLECW	0.9969	0.9864	0.0749	230.72	0.3482	6	1/982	1/7748
SNV	Breast	CXCL16_I236L_1	HLA-A02:01	LLTAALSYV	0.9927	0.545	0.0211	37.05	0.2726	116.32	1/982	1/7748
SNV	Breast	CXCL16_I236L_2	HLA-A02:01	FLLTAALSYV	0.9975	0.6171	0.0211	143.56	0.4506	116.32	1/982	1/7748
SNV	Breast	CXCL16_I236L_2	HLA-C12:02	FLLTAALSY	0.6723	0.9881	0.5954	251.33	0.328	116.32	1/982	1/7748
SNV	Breast	FRMD4A_I63T_6	HLA-B44:03	KEYFGTAF	0.9974	0.8835	0.4554	408	0.393	5.14	1/982	1/7748
SNV	Breast	FRMD4A_I63T_8	HLA-B44:03	KEKEYFGTAF	0.9976	0.847	0.1074	21.55	0.1621	5.14	1/982	1/7748
SNV	Breast	ZNF217_D979Y_4	HLA-B44:03	SEVYSPNVL	0.9693	0.9648	0.2702	48.1	0.2237	145.55	1/982	1/7748
SNV	Breast	ACSL4_G443E_6	HLA-A02:01	MMLSGEAPL	0.9777	0.6388	0.1021	182.86	0.492	31.03	1/982	1/7748
SNV	Breast	BCL7B_S78L_2	HLA-A02:01	ALANSSLLL	0.9882	0.5628	0.4602	29.79	0.2513	32.36	1/982	1/7748
SNV	Breast	BLOC1S1_E141Q_9	HLA-B27:05	MRTIATALQY	0.9999	0.6329	0.1824	14.71	0.2248	24.89	1/982	1/7748
SNV	Breast	BMPR1A_E415K_9	HLA-A02:01	YMAPEVLDKSL	0.9978	0.7281	1.3845	186.04	0.4949	17.42	1/982	1/7748
SNV	Breast	BMPR1A_E415K_11	HLA-B27:05	KRYMAPEVLDK	0.9999	0.711	0.077	199.41	0.4842	17.42	1/982	1/7748
SNV	Breast	CAP2_D429H_3	HLA-A02:01	ALHCEIVSA	0.9901	0.664	0.2609	284.75	0.5642	18.18	1/982	1/7748
SNV	Breast	HCFC2_G89E_8	HLA-B27:05	TRILVFGEM	0.9997	0.7946	0.3465	15.4	0.2282	12.6	1/982	1/7748
SNV	Breast	HCLS1_K165N_7	HLA-B27:05	GRYGVENDK	0.964	0.9312	0.2193	8.32	0.179	27.89	1/982	1/7748
SNV	Breast	HCLS1_K165N_7	HLA-B27:05	GRYGVENDKW	0.9993	0.9025	0.1113	12.64	0.2134	27.89	1/982	1/7748
SNV	Breast	LRRC8A_S609C_6	HLA-B27:05	ERIPHCIFSL	0.9998	0.8427	0.4429	26.47	0.2718	60.02	1/982	1/7748
SNV	Breast	MED13L_S2003L_7	HLA-C02:02	LVFPTSLTI	0.7905	0.9879	0.1016	26.65	0.0597	34.53	1/982	1/7748
SNV	Breast	MICAL1_D461H_1	HLA-B08:01	HPATRYPNL	0.9972	0.5334	0.0583	5.26	0.0224	9.56	1/982	1/7748
SNV	Breast	NOS3_E742Q_8	HLA-B27:05	YRLSAQAQGL	0.9999	0.8202	0.1474	12.2	0.2108	4.22	1/982	1/7748
SNV	Breast	PREX1_I1232M_9	HLA-C02:02	HLFNQVDSM	0.5699	0.9701	0.5221	132.38	0.1992	58.01	1/982	1/7748
SNV	Breast	PRPF4B_S87F_9	HLA-B27:05	KRKEIIDAF	0.9979	0.8886	0.1303	1.57	0.0412	31.77	1/982	1/7748
SNV	Breast	PRPF4B_S87F_9	HLA-C07:01	KRKEIIDAF	0.9943	0.6516	0.0211	108.89	0.0905	31.77	1/982	1/7748
SNV	Breast	SLC1A7_A94V_9	HLA-B27:05	SRLGVLTVV	0.9999	0.792	0.2085	2.52	0.0795	3.24	1/982	1/7748
SNV	Breast	SLC1A7_A94V_9	HLA-B27:05	SRLGVLTVVY	1	0.8831	0.051	1.78	0.0511	3.24	1/982	1/7748
SNV	Breast	SLC1A7_A94V_9	HLA-B27:05	SRLGVLTVVYY	1	0.866	0.1824	5.71	0.1518	3.24	1/982	1/7748
SNV	Breast	SLC1A7_A94V_9	HLA-C07:01	SRLGVLTVV	0.9765	0.7429	0.0925	127.9	0.0989	3.24	1/982	1/7748
SNV	Breast	SPTBN1_E1646K_3	HLA-B08:01	YAKTVHQL	0.9987	0.572	0.2155	23.56	0.0703	41.17	1/982	1/7748
SNV	Breast	TTC39A_A553G_6	HLA-A02:01	ALLELGLLL	0.9963	0.6607	0.2931	1.93	0.0429	46.76	1/982	1/7748
SNV	Breast	TTC39A_A553G_6	HLA-A02:01	ALLELGLLLM	0.9934	0.5279	0.6216	61.73	0.3295	46.76	1/982	1/7748
SNV	Breast	UNC93B1_A438V_3	HLA-A02:01	YVVAALWGV	0.9788	0.7145	0.0225	5.05	0.1049	25.37	1/982	1/7748
SNV	Breast	ACPP_R28L_1	HLA-B15:17	LSVLAKELKF	0.9987	0.8849	1.7696	258.69	1.3993	5.12	1/982	1/7748
SNV	Breast	AGFG2_E95K_5	HLA-B15:17	FTEPKVVFL	0.592	0.9094	1.0414	440.04	1.6523	24.74	1/982	1/7748
SNV	Breast	AGFG2_E95K_7	HLA-B15:17	TTFTEPKVVF	0.998	0.9047	1.0879	4.61	0.2642	24.74	1/982	1/7748
SNV	Breast	AGFG2_E95K_5	HLA-C03:03	FTEPKVVFL	0.998	0.9924	0.129	107.65	0.2822	24.74	1/982	1/7748
SNV	Breast	ARHGAP31_E1042Q_5	HLA-B15:17	ISLAQGKEL	0.9563	0.9809	0.8164	11.39	0.4449	22.75	1/982	1/7748
SNV	Breast	ARHGAP31_E1042Q_5	HLA-C03:03	ISLAQGKEL	0.9992	0.9945	0.2318	365.67	0.452	22.75	1/982	1/7748
SNV	Breast	AUH_A163T_1	HLA-B15:17	TVINDIANL	0.9463	0.9398	1.8724	135.39	1.151	13.7	1/982	1/7748
SNV	Breast	AUH_A163T_2	HLA-B15:17	RTVINDIANL	0.9867	0.9722	1.1963	42.86	0.7799	13.7	1/982	1/7748
SNV	Breast	AUH_A163T_7	HLA-C03:03	FVSKIRTVI	0.9817	0.9675	0.185	95	0.2692	13.7	1/982	1/7748
SNV	Breast	AUH_A163T_1	HLA-C03:03	TVINDIANL	0.9995	0.9914	0.7094	89.58	0.263	13.7	1/982	1/7748
SNV	Breast	BAZ1B_L1034V_1	HLA-B15:17	VARKPNLGL	0.8692	0.8534	0.5701	9.77	0.41	85.8	1/982	1/7748
SNV	Breast	BAZ1B_L1034V_1	HLA-C03:03	VARKPNLGL	0.984	0.9861	0.2318	150.46	0.3223	85.8	1/982	1/7748
SNV	Breast	BRCA1_E9Q_5	HLA-B15:17	RVQEVQNVI	0.9678	0.9419	1.2101	21.14	0.595	8.98	1/982	1/7748
SNV	Breast	BRCA1_E9Q_5	HLA-C03:03	RVQEVQNVI	0.951	0.9894	0.7165	467.42	0.4917	8.98	1/982	1/7748
SNV	Breast	CANT1_A271V_9	HLA-B15:17	VSNYNALRV	0.8842	0.8948	1.8591	135.88	1.1523	125.03	1/982	1/7748
SNV	Breast	CANT1_A271V_1	HLA-B15:17	VAAGIQPPGY	0.9797	0.9132	1.2816	13.48	0.4832	125.03	1/982	1/7748
SNV	Breast	CCNDBP1_E320K_8	HLA-B15:17	SVLKKALKI	0.9362	0.7278	1.5798	200.08	1.2941	19.71	1/982	1/7748
SNV	Breast	CCPG1_S140C_3	HLA-B15:17	SSCSSQYTF	0.9936	0.7154	0.018	15.43	0.5155	9.42	1/982	1/7748
SNV	Breast	CCPG1_S140C_4	HLA-B15:17	GSSCSSQYTF	0.9932	0.7552	1.126	262.64	1.4065	9.42	1/982	1/7748
SNV	Breast	CEP162_E623Q_6	HLA-B15:17	RVQEAQDKW	0.9895	0.9509	0.1664	2.41	0.1372	10.11	1/982	1/7748
SNV	Breast	CLCC1_R424T_2	HLA-B15:17	LTERDVDLRF	0.954	0.7095	1.9007	8.96	0.392	24.34	1/982	1/7748
SNV	Breast	CRTAM_R4T_9	HLA-B15:17	WTVLSLLAW	0.9767	0.9846	0.0649	57.16	0.8833	2.63	1/982	1/7748
SNV	Breast	DLST_R61K_5	HLA-C07:01	VRFFKTTAV	0.9601	0.7641	0.0607	20.2	0.0381	83.25	1/982	1/7748
SNV	Breast	DMD_Q271E_6	HLA-B15:01	FQLHHEMHY	0.9996	0.918	0.0015	8.16	0.0791	10.01	1/982	1/7748
SNV	Breast	DPM1_E196Q_7	HLA-C07:01	YRKEVLQKL	0.9984	0.7219	0.0039	3.72	0.0078	130.76	1/982	1/7748
SNV	Breast	EDC4_R1386W_7	HLA-A02:01	SLGKAAWRL	0.9142	0.8222	0.4794	127.57	0.4304	27.97	1/982	1/7748
SNV	Breast	EDC4_R1386W_4	HLA-B15:17	KAAWRLSLM	0.9953	0.9516	0.3693	12.01	0.457	27.97	1/982	1/7748
SNV	Breast	EDC4_R1386W_3	HLA-B15:17	AAWRLSLML	0.9826	0.9734	0.4359	202.16	1.2979	27.97	1/982	1/7748
SNV	Breast	EDC4_R1386W_4	HLA-C03:03	KAAWRLSLM	0.9838	0.9919	0.1945	435.52	0.4803	27.97	1/982	1/7748
SNV	Breast	ELOVL3_L47V_2	HLA-B15:01	VVIAVGQNY	0.9974	0.7494	0.1845	4.48	0.0462	3.55	1/982	1/7748
SNV	Breast	ELOVL3_L47V_2	HLA-B15:17	VVIAVGQNY	0.98	0.731	0.2279	2.02	0.0955	3.55	1/982	1/7748
SNV	Breast	EPHA4_R728C_1	HLA-B15:17	CGIGSGMKY	0.9553	0.9145	0.5787	203	1.2994	6.15	1/982	1/7748
SNV	Breast	ESRP2_L445F_9	HLA-B15:01	TAAEVQQVF	0.9929	0.8337	0.4778	263.87	0.4098	20.04	1/982	1/7748
SNV	Breast	ESRP2_L445F_9	HLA-B15:17	TAAEVQQVF	0.9957	0.9174	0.198	3.22	0.193	20.04	1/982	1/7748
SNV	Breast	ESRP2_L445F_10	HLA-B15:17	STAAEVQQVF	0.9981	0.806	0.5894	4.54	0.2609	20.04	1/982	1/7748
SNV	Breast	ESRP2_L445F_11	HLA-B15:17	RSTAAEVQQVF	0.9992	0.8665	1.3376	28.72	0.669	20.04	1/982	1/7748
SNV	Breast	ESRP2_L445F_9	HLA-C03:03	TAAEVQQVF	0.9993	0.987	0.1553	25.12	0.1551	20.04	1/982	1/7748
SNV	Breast	FAM120C_E550Q_8	HLA-B15:17	EAFHHQPQW	0.9138	0.9929	0.0823	6.67	0.3357	14.35	1/982	1/7748
SNV	Breast	FAM120C_E550Q_10	HLA-B15:17	ITEAFHHQPQW	0.9961	0.9576	1.3824	67.13	0.9322	14.35	1/982	1/7748
SNV	Breast	FAM189B_F51L_10	HLA-A02:01	VLLGILVVTL	0.9804	0.7333	0.3601	368.38	0.6081	38.51	1/982	1/7748
SNV	Breast	GAPT_L19V_8	HLA-B15:17	ISVGISLVL	0.9955	0.8985	0.0999	3.77	0.2225	3.78	1/982	1/7748
SNV	Breast	GAPT_L19V_8	HLA-C03:03	ISVGISLVL	0.9998	0.9879	0.0907	8.5	0.0722	3.78	1/982	1/7748
SNV	Breast	GRM2_R255Q_8	HLA-A02:01	AAFEGVVQA	0.6659	0.5558	0.7385	422.7	0.6384	1.57	1/982	1/7748
SNV	Breast	GRM2_R255Q_8	HLA-B15:17	AAFEGVVQAL	0.9924	0.9635	0.9936	346.53	1.5404	1.57	1/982	1/7748
SNV	Breast	GRM2_R255Q_8	HLA-C03:03	AAFEGVVQA	0.9875	0.9815	0.3782	138.62	0.3111	1.57	1/982	1/7748
SNV	Breast	GRM2_R255Q_8	HLA-C03:03	AAFEGVVQAL	0.9999	0.9841	0.0452	21.64	0.1447	1.57	1/982	1/7748
SNV	Breast	ITPKB_E151Q_4	HLA-A02:01	GMFQAHIQA	0.9733	0.5745	0.2651	113.89	0.411	43.62	1/982	1/7748
SNV	Breast	KAT6B_M2002K_5	HLA-B15:01	SQPMKNSGY	0.9991	0.5349	0.2672	45.94	0.2087	25.21	1/982	1/7748
SNV	Breast	KAT6B_M2002K_6	HLA-B15:17	MSQPMKNSGY	0.9844	0.6755	0.728	28.34	0.6658	25.21	1/982	1/7748
SNV	Breast	KRBOX4_E20Q_7	HLA-B15:17	FVDFTLQEW	0.9615	0.9972	0.3844	96.22	1.0363	10.5	1/982	1/7748
SNV	Breast	KRBOX4_E20Q_4	HLA-B15:17	FTLQEWQQL	0.9656	0.9896	0.2836	72.68	0.9541	10.5	1/982	1/7748
SNV	Breast	LGALS1_D103Y_7	HLA-B15:17	LTVKLPYGY	0.9887	0.8526	0.102	1.98	0.0915	1727.01	1/982	1/7748
SNV	Breast	NFE2L1_Q561E_8	HLA-B15:17	MSYQDPAEL	0.9903	0.9363	0.118	3.11	0.1879	211.49	1/982	1/7748
SNV	Breast	NFE2L1_Q561E_8	HLA-C03:03	MSYQDPAEL	0.9998	0.9909	0.0196	2	0.0168	211.49	1/982	1/7748
SNV	Breast	NIPA1_S143F_9	HLA-B15:01	VLIIHSPKF	0.9728	0.8621	0.1914	47.63	0.2126	8.42	1/982	1/7748
SNV	Breast	NIPA1_S143F_9	HLA-B15:17	VLIIHSPKF	0.7856	0.8548	0.7174	31.48	0.6911	8.42	1/982	1/7748
SNV	Breast	NRIP1_I153M_9	HLA-B15:17	QTVALSQQM	0.9852	0.9286	0.2605	8.31	0.3777	54.53	1/982	1/7748
SNV	Breast	NRIP1_I153M_5	HLA-B15:17	LSQQMRQSL	0.9787	0.8588	0.9061	123.26	1.1171	54.53	1/982	1/7748
SNV	Breast	NXF1_K384N_3	HLA-B15:01	NLNSLVLHF	0.9926	0.7726	0.0821	150.96	0.3346	56.87	1/982	1/7748
SNV	Breast	NXF1_K384N_7	HLA-C03:03	FGTENLNSL	0.9994	0.9752	0.1688	23.32	0.1507	56.87	1/982	1/7748
SNV	Breast	OSBPL1A_L415F_9	HLA-B15:01	ASRETCVAF	0.9972	0.905	0.0721	99.14	0.2857	25.76	1/982	1/7748
SNV	Breast	OSBPL1A_L415F_9	HLA-B15:17	ASRETCVAF	0.988	0.9408	0.1531	7.45	0.3569	25.76	1/982	1/7748
SNV	Breast	OSBPL1A_L415F_3	HLA-B15:17	VAFTDCLNLF	0.9975	0.9484	0.4379	278.06	1.434	25.76	1/982	1/7748
SNV	Breast	PIK3CA_E726K_1	HLA-B15:01	KTQKVQMKF	0.9615	0.7495	0.6599	247.09	0.3989	17.86	1/982	2/7748
SNV	Breast	PIK3CA_E726K_1	HLA-B15:17	KTQKVQMKF	0.9959	0.7507	0.015	1.08	0.0062	17.86	1/982	1/7748
SNV	Breast	PLA2G4A_S235L_7	HLA-B15:17	GSTWYMLTL	0.8857	0.958	0.8305	338.31	1.5287	3.88	1/982	1/7748
SNV	Breast	PLA2G4A_S235L_6	HLA-B15:17	STWYMLTLY	0.9465	0.8883	0.29	5.63	0.3035	3.88	1/982	1/7748
SNV	Breast	PLA2G4A_S235L_1	HLA-B15:17	LTLYSHPDF	0.9741	0.8579	0.2988	7.33	0.3536	3.88	1/982	1/7748
SNV	Breast	PLXNA3_D1609H_7	HLA-B15:17	RTASSPHSL	0.9931	0.876	0.107	1.95	0.0892	21.12	1/982	1/7748
SNV	Breast	PLXNA3_D1609H_7	HLA-C03:03	RTASSPHSL	0.994	0.9741	0.1156	22.16	0.1467	21.12	1/982	1/7748
SNV	Breast	PPP2R1A_D440H_3	HLA-C07:01	FFHEKLNSL	0.6577	0.6851	0.2649	164.86	0.1087	152.09	1/982	1/7748
SNV	Breast	PTPN12_S275C_1	HLA-B15:17	CAVQTKEQY	0.9849	0.8967	0.2339	335.25	1.5243	92.86	1/982	1/7748
SNV	Breast	PTPRT_K882N_4	HLA-B15:01	TQMNRGQGY	0.9996	0.8735	0.0609	2.15	0.0151	7.98	1/982	1/7748
SNV	Breast	PTPRT_K882N_5	HLA-B15:01	ITQMNRGQGY	0.999	0.7756	1.3764	10.71	0.101	7.98	1/982	1/7748
SNV	Breast	PTPRT_K882N_5	HLA-B15:17	ITQMNRGQGY	0.9704	0.6706	1.9626	28.44	0.6666	7.98	1/982	1/7748
SNV	Breast	RB1_R334K_1	HLA-A02:01	KLFLDHDKTL	0.9225	0.684	1.0335	287.33	0.5656	20.4	1/982	1/7748
SNV	Breast	SETD4_S178C_7	HLA-B15:17	SSRDFFCSL	0.9287	0.8753	0.232	364.87	1.5655	8.04	1/982	1/7748
SNV	Breast	SYNE1_S8711F_8	HLA-A02:01	SLSQPGPFV	0.9816	0.5518	0.1218	9.96	0.1584	6.13	1/982	1/7748
SNV	Breast	TNRC6A_E511Q_2	HLA-B15:01	GQSKSGGSY	0.9993	0.9078	0.0695	2.17	0.0155	22.89	1/982	1/7748
SNV	Breast	TNRC6A_E511Q_3	HLA-B15:01	NGQSKSGGSY	0.9887	0.8614	1.7344	215.65	0.3812	22.89	1/982	1/7748
SNV	Breast	TNRC6A_E511Q_4	HLA-B15:01	SNGQSKSGGSY	0.9992	0.7448	1.4044	477.49	0.5115	22.89	1/982	1/7748
SNV	Breast	TRIM41_M120V_7	HLA-B15:17	RSSWDNVDY	0.9615	0.8604	0.2235	5.5	0.2991	6.63	1/982	1/7748
SNV	Breast	TRIM41_M120V_6	HLA-B15:17	SSWDNVDYVW	0.9972	0.8992	0.3844	10.11	0.4178	6.63	1/982	1/7748
SNV	Breast	TUBGCP6_P1126A_4	HLA-B15:17	DVAATRPRW	0.6967	0.9371	1.1196	98.45	1.0436	20.98	1/982	1/7748
SNV	Breast	TUBGCP6_P1126A_6	HLA-B15:17	VSDVAATRPRW	0.9991	0.8816	1.2657	297.88	1.4671	20.98	1/982	1/7748
SNV	Breast	URGCP_P796A_2	HLA-B15:01	IAAAILHAF	0.9981	0.7568	0.0236	44.57	0.2055	22.04	1/982	1/7748
SNV	Breast	URGCP_P796A_2	HLA-B15:17	IAAAILHAF	0.9972	0.817	0.0066	1.96	0.0902	22.04	1/982	1/7748
SNV	Breast	URGCP_P796A_2	HLA-C03:03	IAAAILHAF	0.9988	0.9791	0.0484	4.2	0.0416	22.04	1/982	1/7748
SNV	Breast	URGCP_P796A_1	HLA-C03:03	AAAILHAFL	0.9986	0.989	0.4154	364.98	0.4517	22.04	1/982	1/7748
SNV	Breast	XPC_E662K_5	HLA-A02:01	AIYPKTAAI	0.9516	0.5112	0.5156	20.96	0.2214	32.97	1/982	1/7748
SNV	Breast	XPC_E662K_5	HLA-B15:17	AIYPKTAAI	0.9192	0.9216	1.161	138.22	1.1584	32.97	1/982	1/7748
SNV	Breast	XPC_E662K_5	HLA-C03:03	AIYPKTAAI	0.993	0.9847	0.4514	10.3	0.0845	32.97	1/982	1/7748
SNV	Breast	YLPM1_D2005Y_3	HLA-A02:01	LQYAAIEEV	0.9941	0.6267	0.365	117.43	0.4162	26.31	1/982	1/7748
SNV	Breast	YLPM1_D2005Y_5	HLA-A02:01	SLLQYAAIEEV	0.9978	0.8802	0.9875	407.29	0.6302	26.31	1/982	1/7748
SNV	Breast	YLPM1_D2005Y_6	HLA-B15:17	RSLLQYAAI	0.9699	0.9639	0.479	75.18	0.9634	26.31	1/982	1/7748
SNV	Breast	YLPM1_D2005Y_1	HLA-C03:03	YAAIEEVEM	0.9998	0.9931	0.0736	4.97	0.0496	26.31	1/982	1/7748
SNV	Breast	ZNF345_H224Y_3	HLA-B15:01	RIYTGEKPY	0.9992	0.9427	0.1275	7.75	0.0743	3.37	1/982	1/7748
SNV	Breast	ZNF345_H224Y_3	HLA-B15:17	RIYTGEKPY	0.9771	0.9416	0.5924	4.15	0.2427	3.37	1/982	1/7748
SNV	Breast	ZNF419_H365D_3	HLA-B15:17	RVDTGERPY	0.9022	0.937	1.2748	45.87	0.7998	3.14	1/982	1/7748
SNV	Breast	ZNF436_P118S_1	HLA-A02:01	SLQPVTDLL	0.9465	0.7103	0.2669	11.03	0.1665	67.93	1/982	1/7748
SNV	Breast	ZNF436_P118S_1	HLA-A02:01	SLQPVTDLLV	0.9792	0.7003	0.3713	212.37	0.5166	67.93	1/982	1/7748
SNV	Breast	ZNF436_P118S_2	HLA-B15:17	YSLQPVTDL	0.9689	0.9383	0.4555	20.51	0.5873	67.93	1/982	1/7748
SNV	Breast	ZNF436_P118S_2	HLA-C03:03	YSLQPVTDL	0.9994	0.9872	0.024	7.44	0.0658	67.93	1/982	1/7748
SNV	Breast	ZNF701_E86K_7	HLA-B15:17	AIEFSQKEW	0.9146	0.958	1.2816	205.31	1.304	8.03	1/982	1/7748
SNV	Breast	ZNF701_E86K_8	HLA-B15:17	VAIEFSQKEW	0.9983	0.9702	0.492	24.53	0.631	8.03	1/982	1/7748
SNV	Breast	CNR1_L159P_7	HLA-C07:02	YHFIGSPAV	0.5607	0.9675	0.77	357.42	0.3479	5.11	1/982	1/7748
SNV	Breast	GJB2_F146L_2	HLA-A02:01	ILEAAFMYV	0.9968	0.521	0.132	14.48	0.1896	19.21	1/982	1/7748
SNV	Breast	GJB2_F146L_5	HLA-C07:02	FRVILEAAF	0.8751	0.971	0.07	150.21	0.2374	19.21	1/982	1/7748
SNV	Breast	HNRNPDL_S116T_6	HLA-B07:02	HPPADTSVTM	0.972	0.5789	0.1208	16.57	0.1454	124.86	1/982	1/7748
SNV	Breast	MSLN_F125L_9	HLA-A02:01	ALPLDLLLL	0.9445	0.5491	0.5933	355.8	0.6004	1.24	1/982	1/7748
SNV	Breast	ACBD5_M114R_2	HLA-C07:01	ARIAYVEEM	0.9994	0.8664	0.0135	24.13	0.0425	26.47	1/982	1/7748
SNV	Breast	ARHGEF2_R660H_7	HLA-A02:06	LLQDAIHEV	0.9993	0.857	0.0153	1.43	0.0118	129.23	1/982	1/7748
SNV	Breast	ARHGEF2_R660H_8	HLA-A02:06	RLLQDAIHEV	0.9989	0.8298	0.1525	3.89	0.0574	129.23	1/982	1/7748
SNV	Breast	ARHGEF2_R660H_1	HLA-B44:03	HEVEGLKDL	0.9418	0.9603	0.2387	42.2	0.2116	129.23	1/982	1/7748
SNV	Breast	ARHGEF2_R660H_1	HLA-B44:03	HEVEGLKDLL	0.9292	0.9631	0.2916	461.66	0.4038	129.23	1/982	1/7748
SNV	Breast	CAMTA2_S289F_9	HLA-B44:03	PELPKAHTF	0.8191	0.9031	0.3121	42.19	0.2116	18.77	1/982	1/7748
SNV	Breast	COPE_G14A_1	HLA-B44:03	AEVDELFDV	0.7129	0.9909	0.3393	421.25	0.3955	138.23	1/982	1/7748
SNV	Breast	DYNC2H1_K1084N_3	HLA-C14:02	LINEKKIEF	0.8142	0.9457	0.3904	121.69	0.5527	8.13	1/982	1/7748
SNV	Breast	IFT52_D78H_3	HLA-A02:06	YLHTGGDVFV	0.9891	0.5378	0.2141	80.76	0.2909	95.06	1/982	1/7748
SNV	Breast	IFT52_D78H_4	HLA-C14:02	KYLHTGGDVF	0.9301	0.9552	0.415	343.11	0.9139	95.06	1/982	1/7748
SNV	Breast	NFATC4_D888E_7	HLA-B44:03	SEIIGREL	0.9992	0.8456	0.4888	305.47	0.3702	16.44	1/982	1/7748
SNV	Breast	NFATC4_D888E_7	HLA-B44:03	SEIIGRELSGF	0.9999	0.9089	0.1021	238.17	0.3507	16.44	1/982	1/7748
SNV	Breast	NPAS2_R22W_6	HLA-B44:03	SEKKRWDQF	0.9869	0.5393	0.1802	113.8	0.2931	1.98	1/982	1/7748
SNV	Breast	NPAS2_R22W_3	HLA-C07:01	KRWDQFNVL	0.9993	0.5879	0.005	19.92	0.0378	1.98	1/982	1/7748
SNV	Breast	NPAS2_R22W_2	HLA-C14:02	RWDQFNVL	0.9573	0.9531	0.4206	434.02	1.0126	1.98	1/982	1/7748
SNV	Breast	NPAS2_R22W_3	HLA-C14:02	KRWDQFNVL	0.6592	0.9409	0.6644	37.51	0.3047	1.98	1/982	1/7748
SNV	Breast	NPAS2_R22W_2	HLA-C14:02	RWDQFNVLI	0.585	0.9569	0.3734	134.62	0.5785	1.98	1/982	1/7748
SNV	Breast	SHPK_P298A_3	HLA-A02:06	QTADPTAPV	0.8924	0.746	0.497	218.14	0.4272	3.36	1/982	1/7748
SNV	Breast	SPPL2B_T222M_6	HLA-B51:01	EAVDVMPV	0.9973	0.9519	0.6394	287.84	0.358	13.48	1/982	1/7748
SNV	Breast	SPPL2B_T222M_6	HLA-B51:01	EAVDVMPVM	0.707	0.9111	0.129	194.14	0.3023	13.48	1/982	1/7748
SNV	Breast	SPPL2B_T222M_3	HLA-B51:01	DVMPVMTCV	0.9881	0.6147	0.4795	242.93	0.334	13.48	1/982	1/7748
SNV	Breast	SSR4_A11S_8	HLA-C14:02	MASLGALSL	0.991	0.9922	0.4206	127.14	0.5639	101.29	1/982	1/7748
SNV	Breast	TP53_M133K_9	HLA-C14:02	TYSPALNKKF	0.8623	0.9498	0.3136	375.15	0.9507	332.25	1/982	1/7748
SNV	Breast	UNC5D_V547F_8	HLA-B44:03	TELRTTGFF	0.9926	0.9379	0.1128	303.45	0.3697	1	1/982	1/7748
SNV	Breast	GOLGA3_D92Y_1	HLA-C07:02	YASPGVAGF	0.9492	0.9568	0.3945	84.31	0.1776	47.24	1/982	1/7748
SNV	Breast	GOLGA3_D92Y_1	HLA-C08:02	YASPGVAGF	0.5412	0.9762	0.2134	65.15	0.0548	47.24	1/982	1/7748
SNV	Breast	ID2_I85T_8	HLA-A02:01	ALDSHPTTV	0.9959	0.5151	0.2042	1.65	0.0336	112.91	1/982	1/7748
SNV	Breast	ID2_I85T_8	HLA-C08:02	ALDSHPTTV	0.9996	0.9925	0.0101	5.91	0.013	112.91	1/982	1/7748
SNV	Breast	ZFAND4_D202V_10	HLA-A02:01	SMYNSDTDEV	0.9819	0.6619	0.4918	336.66	0.5913	8.41	1/982	1/7748
SNV	Breast	ARHGAP31_P783R_1	HLA-C03:03	RAPPPPTPL	0.9994	0.9923	0.0196	3.25	0.0338	18.57	1/982	1/7748
SNV	Breast	CDC6_D547H_5	HLA-B08:01	HALKHKAL	0.9993	0.5371	0.1208	6.49	0.0282	466.21	1/982	1/7748
SNV	Breast	CDC6_D547H_6	HLA-B08:01	EHALKHKAL	0.9489	0.6486	0.5566	233.29	0.2462	466.21	1/982	1/7748
SNV	Breast	FAM208A_T333I_9	HLA-C03:03	FTYKDDIQI	0.9862	0.9727	0.3257	57.67	0.2168	48.15	1/982	1/7748
SNV	Breast	GRM8_N274H_3	HLA-B35:01	TPHARAVIM	0.9419	0.8938	0.1624	16.34	0.1638	2.9	1/982	1/7748
SNV	Breast	PNPLA7_P759L_7	HLA-C03:03	ALSAIGLTL	0.9267	0.9842	0.422	346.71	0.4434	5.15	1/982	1/7748
SNV	Breast	PNPLA7_P759L_5	HLA-C03:03	SAIGLTLLL	0.9997	0.9802	0.0146	3.95	0.0392	5.15	1/982	1/7748
SNV	Breast	PTK2_L211F_8	HLA-C07:01	KRFFPKSFL	0.9993	0.8065	0.0107	31.27	0.049	25.45	1/982	1/7748
SNV	Breast	RUSC1_I313M_6	HLA-B35:01	VPHRTMTSF	0.9817	0.7557	0.0304	3.04	0.0583	77.18	1/982	1/7748
SNV	Breast	RUSC1_I313M_3	HLA-C03:03	RTMTSFHEL	0.9917	0.9791	0.1756	16.74	0.123	77.18	1/982	1/7748
SNV	Breast	TICRR_K700R_6	HLA-B08:01	LLKTSRSL	0.9997	0.7306	0.3267	41.59	0.1043	7.01	1/982	1/7748
SNV	Breast	ADAMTS17_S1039F_9	HLA-C07:02	RINANTITF	0.9712	0.9543	0.701	372.51	0.354	3.8	1/982	1/7748
SNV	Breast	ADAMTS17_S1039F_3	HLA-C07:02	ITFPRLAAL	0.9806	0.9734	0.648	88.94	0.1828	3.8	1/982	1/7748
SNV	Breast	ADAMTS17_S1039F_9	HLA-C05:01	RINANTITF	0.6179	0.965	1.5343	230.61	0.3056	3.8	1/982	1/7748
SNV	Breast	ADCY1_I304S_1	HLA-A02:01	SLFADIVGF	0.7399	0.6843	0.8448	102.24	0.3944	7.12	1/982	1/7748
SNV	Breast	ADCY1_I304S_8	HLA-B39:06	QRHDNVSSL	0.9987	0.5745	0.071	6.83	0.0523	7.12	1/982	1/7748
SNV	Breast	ADCY1_I304S_7	HLA-B39:06	RHDNVSSLF	0.9651	0.7201	1.7548	267.53	0.2855	7.12	1/982	1/7748
SNV	Breast	ADCY1_I304S_8	HLA-C07:02	QRHDNVSSL	0.925	0.9055	0.021	8.37	0.0393	7.12	1/982	1/7748
SNV	Breast	ADCY1_I304S_7	HLA-C07:02	RHDNVSSLF	0.7192	0.9086	0.2126	470.57	0.3885	7.12	1/982	1/7748
SNV	Breast	ARHGAP25_P246T_8	HLA-A02:01	YLRDLPETV	0.9934	0.7309	0.0897	1.96	0.0439	1.9	1/982	1/7748
SNV	Breast	ARHGAP25_P246T_8	HLA-A02:01	YLRDLPETVV	0.8704	0.7508	0.7602	101.39	0.3933	1.9	1/982	1/7748
SNV	Breast	ARHGAP25_P246T_7	HLA-B39:06	LRDLPETVV	0.9914	0.9848	0.462	40.61	0.1288	1.9	1/982	1/7748
SNV	Breast	ARHGAP25_P246T_8	HLA-C05:01	YLRDLPETV	0.8922	0.9945	0.5075	126.81	0.2403	1.9	1/982	1/7748
SNV	Breast	ARSE_W370S_6	HLA-B39:06	TQYGGSNGI	0.9037	0.6539	0.328	441.73	0.348	28.96	1/982	1/7748
SNV	Breast	ASPM_L1820I_9	HLA-C07:02	YRGYKVRQI	0.8028	0.9305	0.4095	79.93	0.1728	76.46	1/982	1/7748
SNV	Breast	BTN2A1_R319G_9	HLA-B44:02	KEKLQEELGW	0.9966	0.6724	0.0639	8.31	0.1018	30.98	1/982	1/7748
SNV	Breast	CDH24_E270Q_7	HLA-A02:01	YQFSVVQTA	0.95	0.5827	0.1691	236.86	0.5343	20.35	1/982	1/7748
SNV	Breast	CFAP36_I224V_8	HLA-B39:06	MHFANQSV	0.9997	0.7771	0.0478	39.52	0.1268	63.41	1/982	1/7748
SNV	Breast	CPAMD8_V1446L_7	HLA-A03:01	VAAALPLVK	0.9883	0.5156	0.3866	166.62	0.3393	7.81	1/982	1/7748
SNV	Breast	DENND1B_T88M_9	HLA-C07:02	QRFGFCRLM	0.9935	0.9585	0.0379	134.38	0.2254	14.18	1/982	1/7748
SNV	Breast	DYSF_M848I_3	HLA-B39:06	ARIPVQIRV	0.9982	0.8874	0.5952	86.82	0.1831	9.55	1/982	1/7748
SNV	Breast	DYSF_M848I_3	HLA-C07:02	ARIPVQIRV	0.8678	0.9718	0.2519	38.08	0.1129	9.55	1/982	1/7748
SNV	Breast	EML6_C786Y_7	HLA-C05:01	FSADGKYLV	0.9996	0.9691	0.4678	17.95	0.1182	1.17	1/982	1/7748
SNV	Breast	EPHB3_S819T_2	HLA-C05:01	ATDVWSYGI	0.9997	0.9585	0.2751	50.78	0.1712	933.43	1/982	1/7748
SNV	Breast	EPHB3_V947F_2	HLA-C07:02	FFSAGFASF	0.7993	0.9867	0.0862	48.21	0.1295	933.43	1/982	1/7748
SNV	Breast	FAM117B_Y228F_9	HLA-C05:01	SLDTLAAPF	0.9986	0.8843	0.0726	130.45	0.2426	57.4	1/982	1/7748
SNV	Breast	GPR158_L454M_8	HLA-B39:06	IRASGLIML	0.9948	0.9025	0.2944	15.07	0.0788	1.56	1/982	1/7748
SNV	Breast	GPR158_L454M_8	HLA-C07:02	IRASGLIML	0.9547	0.9501	0.1325	9.75	0.0476	1.56	1/982	1/7748
SNV	Breast	KRBA1_P513L_8	HLA-A02:01	CLKEIPVLV	0.9893	0.8072	0.3779	402.85	0.6278	9.64	1/982	1/7748
SNV	Breast	LRP5_S867N_8	HLA-C05:01	WTDWNLHNI	0.9997	0.9831	0.1154	23.26	0.1303	48.69	1/982	1/7748
SNV	Breast	MATN4_V405L_9	HLA-C07:02	VRPQNFELL	0.9222	0.7794	0.1108	54.17	0.14	7.36	1/982	1/7748
SNV	Breast	MRC1_M466I_9	HLA-B39:06	NRQEDCVVI	0.9937	0.6751	0.3118	79.54	0.177	2.76	1/982	1/7748
SNV	Breast	MYLK_P28T_1	HLA-A02:01	TLTEAPAFI	0.9661	0.5367	0.2976	22.43	0.2271	4.58	1/982	1/7748
SNV	Breast	MYLK_P28T_7	HLA-B39:06	SRVDSMTL	0.9998	0.7322	0.9187	208.44	0.2605	4.58	1/982	1/7748
SNV	Breast	MYLK_P28T_1	HLA-C05:01	TLTEAPAFI	0.9778	0.9745	1.1645	446.32	0.389	4.58	1/982	1/7748
SNV	Breast	NARS_F260L_2	HLA-A02:01	HLFDRGYYEV	0.9989	0.7061	0.2188	1.91	0.0423	123.94	1/982	1/7748
SNV	Breast	NDUFB4_P27L_11	HLA-C05:01	TLDPAEYNISL	1	0.9199	0.0841	70.2	0.1933	122.95	1/982	1/7748
SNV	Breast	NRROS_L327V_11	HLA-A02:01	SLWEEFSSSDV	0.9945	0.5971	0.9966	205.77	0.5115	5.76	1/982	1/7748
SNV	Breast	NRROS_L327V_4	HLA-C05:01	SSDVADLRF	0.9997	0.8717	0.1683	8.74	0.08	5.76	1/982	1/7748
SNV	Breast	NRROS_L327V_1	HLA-C05:01	VADLRFLDM	0.9998	0.9658	0.0684	142.37	0.2497	5.76	1/982	1/7748
SNV	Breast	PCDH12_P1018L_2	HLA-A02:01	GLLDPEEDL	0.9644	0.811	0.7638	18.17	0.2093	4.93	1/982	1/7748
SNV	Breast	PCDH12_P1018L_1	HLA-A02:01	LLDPEEDLSV	0.9943	0.833	0.6625	61.69	0.3294	4.93	1/982	1/7748
SNV	Breast	PCDH12_P1018L_2	HLA-A02:01	GLLDPEEDLSV	0.9992	0.8181	0.6095	5.13	0.1062	4.93	1/982	1/7748
SNV	Breast	PCDH12_P1018L_1	HLA-C05:01	LLDPEEDLSV	0.9999	0.956	0.1154	280.28	0.3302	4.93	1/982	1/7748
SNV	Breast	PI4KA_D727G_5	HLA-B39:06	EHLVGELL	0.9995	0.819	0.1485	305.61	0.2989	38.07	1/982	1/7748
SNV	Breast	PI4KA_D727G_5	HLA-B39:06	EHLVGELLM	0.9866	0.8064	0.1703	7.71	0.0558	38.07	1/982	1/7748
SNV	Breast	PI4KA_D727Y_4	HLA-A02:01	HLVYELLMNL	0.9806	0.5092	0.9966	370.19	0.6091	38.07	1/982	1/7748
SNV	Breast	PI4KA_D727Y_5	HLA-B39:06	EHLVYELLM	0.9861	0.7669	0.2754	34.04	0.1194	38.07	1/982	1/7748
SNV	Breast	PI4KA_D727Y_8	HLA-C05:01	IQDEHLVYEL	1	0.9499	0.3154	157.35	0.2611	38.07	1/982	1/7748
SNV	Breast	PPFIA1_Q38P_5	HLA-B39:06	SHFEPLMV	0.9997	0.8764	0.0849	65.86	0.164	16.02	1/982	1/7748
SNV	Breast	PPFIA1_Q38P_5	HLA-B39:06	SHFEPLMVS	0.9949	0.8825	0.0318	34.82	0.1204	16.02	1/982	1/7748
SNV	Breast	PPFIA1_Q38P_5	HLA-B39:06	SHFEPLMVSM	0.9979	0.9482	0.0914	3.21	0.0275	16.02	1/982	1/7748
SNV	Breast	PPFIA1_Q38P_5	HLA-B39:06	SHFEPLMVSML	0.9997	0.9413	0.631	14.77	0.0778	16.02	1/982	1/7748
SNV	Breast	PPFIA1_Q38P_4	HLA-C07:02	HFEPLMVSM	0.9792	0.9795	0.1356	94.66	0.1889	16.02	1/982	1/7748
SNV	Breast	PPM1E_Q351H_6	HLA-C05:01	WVGDSHVML	0.9976	0.9745	1.0919	358.63	0.3614	2.62	1/982	1/7748
SNV	Breast	PPM1E_Q351H_5	HLA-C05:01	VGDSHVMLV	0.9999	0.9672	0.022	10.79	0.0938	2.62	1/982	1/7748
SNV	Breast	RTFDC1_K292M_2	HLA-A02:01	SMEESAHWV	0.9696	0.5793	0.2808	387.67	0.6193	104.15	1/982	1/7748
SNV	Breast	RTFDC1_K292M_9	HLA-B39:06	THSSAKRSM	0.9764	0.8843	0.2702	352.58	0.3177	104.15	1/982	1/7748
SNV	Breast	SETDB1_D298Y_3	HLA-C07:02	FFYDGYASY	0.8008	0.8772	0.0899	2.56	0.0079	44.81	1/982	1/7748
SNV	Breast	SETDB1_D298Y_2	HLA-C07:02	FYDGYASYV	0.6295	0.9015	0.3874	401.95	0.3652	44.81	1/982	1/7748
SNV	Breast	SETDB1_D298Y_2	HLA-C05:01	FYDGYASYV	0.9995	0.8687	0.2627	98.16	0.2194	44.81	1/982	1/7748
SNV	Breast	SFTA3_V15F_1	HLA-A02:01	FLFLQDQAQRL	0.9948	0.8046	1.3724	36.72	0.2717	2.27	1/982	1/7748
SNV	Breast	STRA6_L392F_6	HLA-B39:06	THRTNFRAL	0.9864	0.6152	0.3927	329.14	0.3085	13.05	1/982	1/7748
SNV	Breast	SYCP1_Q665E_6	HLA-C05:01	ITDTYEKEI	0.9999	0.9617	0.051	46.52	0.1659	11.09	1/982	1/7748
SNV	Breast	TANC1_A1396P_8	HLA-A02:01	ALADLQEPV	0.9988	0.7926	0.0861	1.83	0.0403	4.43	1/982	1/7748
SNV	Breast	TANC1_A1396P_8	HLA-A02:01	ALADLQEPVKL	0.9993	0.839	0.6539	51.26	0.3056	4.43	1/982	1/7748
SNV	Breast	TANC1_A1396P_8	HLA-A03:01	ALADLQEPVK	0.9927	0.5683	0.4559	131.12	0.3082	4.43	1/982	1/7748
SNV	Breast	TBXAS1_V328L_2	HLA-A02:01	TLDEIVGQA	0.9785	0.6031	0.5905	60.66	0.3272	2.31	1/982	1/7748
SNV	Breast	TBXAS1_V328L_2	HLA-C05:01	TLDEIVGQAF	0.9999	0.8395	0.0628	92.01	0.2142	2.31	1/982	1/7748
SNV	Breast	THEM5_K191R_2	HLA-B39:06	FRNLIPVDSL	0.9981	0.7749	0.7698	63.17	0.1612	2.19	1/982	1/7748
SNV	Breast	TMED8_D294G_3	HLA-B39:06	SHGYPGEGI	0.9433	0.96	0.3842	332.02	0.3096	16.54	1/982	1/7748
SNV	Breast	TMEM126A_N51H_2	HLA-B39:06	AHSLFRRIL	0.993	0.7761	0.3559	290.89	0.2939	44.56	1/982	1/7748
SNV	Breast	TTLL7_P354A_9	HLA-A02:01	WLLEINRAA	0.9884	0.7248	0.4466	489.39	0.6707	5.9	1/982	1/7748
SNV	Breast	VPS13D_I1851T_8	HLA-B39:06	MRLPPEGTL	0.9971	0.9442	0.1913	4.43	0.037	16.34	1/982	1/7748
SNV	Breast	VPS13D_I1851T_8	HLA-C07:02	MRLPPEGTL	0.8758	0.9861	0.0606	25.21	0.0884	16.34	1/982	1/7748
SNV	Breast	XPNPEP1_G299V_7	HLA-A02:01	HLLLDLVLEA	0.9932	0.5004	0.8842	329.03	0.5876	99.93	1/982	1/7748
SNV	Breast	XPNPEP1_G299V_1	HLA-A02:01	VLEAEYRIQV	0.885	0.6072	1.821	303.81	0.5747	99.93	1/982	1/7748
SNV	Breast	XPNPEP1_G299V_8	HLA-B39:06	EHLLLDLVL	0.9956	0.9142	0.1161	1.81	0.0088	99.93	1/982	1/7748
SNV	Breast	ZNF528_F306V_2	HLA-C05:01	VVNQIAHLV	0.9981	0.9832	0.938	314.55	0.3448	1.5	1/982	1/7748
SNV	Breast	ZNF780A_R74I_1	HLA-C07:02	IRYPDLEL	0.9957	0.9457	0.5371	378.11	0.3562	11.81	1/982	1/7748
SNV	Breast	ZNF780A_R74I_7	HLA-C07:02	VRKETSIRY	0.7667	0.8768	0.1528	175.72	0.2547	11.81	1/982	1/7748
SNV	Breast	ARID1A_R2143C_9	HLA-A02:01	ILATPPFSCL	0.9732	0.7086	1.3046	272.73	0.5572	76.2	1/982	1/7748
SNV	Breast	BSG_P207L_3	HLA-A02:01	FLLEPMGTA	0.9928	0.8107	0.0914	2.55	0.0563	638.24	1/982	1/7748
SNV	Breast	BSG_P207L_3	HLA-A02:01	FLLEPMGTANI	0.9972	0.7663	0.7194	52.61	0.3089	638.24	1/982	1/7748
SNV	Breast	COPS7B_P38S_5	HLA-A02:01	VLEASGVYV	0.9724	0.7706	0.5996	72.89	0.3509	33.57	1/982	1/7748
SNV	Breast	COPS7B_P38S_5	HLA-C05:01	VLEASGVYV	0.9991	0.9804	0.294	35.01	0.149	33.57	1/982	1/7748
SNV	Breast	CYFIP1_E447K_5	HLA-C05:01	YTSEKKFAL	0.9994	0.941	0.2781	83.13	0.2059	86.27	1/982	1/7748
SNV	Breast	KCTD3_R185G_5	HLA-C05:01	PVDPGKVLI	0.9998	0.9665	0.1573	48.24	0.1681	45.52	1/982	1/7748
SNV	Breast	KCTD3_R185G_6	HLA-C05:01	FPVDPGKVLI	0.9962	0.9677	0.9169	5.58	0.062	45.52	1/982	1/7748
SNV	Breast	MMS22L_A740V_2	HLA-C05:01	LVDAAADFTL	0.9999	0.9885	0.1294	235.92	0.3085	6.24	1/982	1/7748
SNV	Breast	ANKLE2_P516L_10	HLA-B27:05	SRYGGSPRDL	0.9997	0.89	0.2085	6.8	0.164	12.59	1/982	1/7748
SNV	Breast	BMX_D401N_7	HLA-C02:02	KANKVPNSV	0.7989	0.9752	0.1664	162.8	0.2327	2.08	1/982	1/7748
SNV	Breast	GANC_D480N_3	HLA-C05:01	YLNFTNPKV	0.9838	0.9664	1.3559	16.31	0.1137	6.58	1/982	1/7748
SNV	Breast	HYOU1_R917W_7	HLA-A31:01	FTKPRPWPK	0.9292	0.5872	0.077	44.15	0.1371	81.2	1/982	1/7748
SNV	Breast	HYOU1_R917W_8	HLA-A31:01	KFTKPRPWPK	0.9504	0.6466	1.1514	400.2	0.3916	81.2	1/982	1/7748
SNV	Breast	METAP1_D231Y_8	HLA-B27:05	YRNGYHGYL	0.9966	0.9039	0.1641	8.65	0.1824	31.42	1/982	1/7748
SNV	Breast	PTPRH_G720R_4	HLA-A31:01	SVLRLGPAR	0.9817	0.7777	0.1371	59.76	0.1617	1.43	1/982	1/7748
SNV	Breast	PTPRH_G720R_2	HLA-B27:05	LRLGPARSY	0.9995	0.9166	0.0855	3.9	0.1226	1.43	1/982	1/7748
SNV	Breast	WNT4_T291M_8	HLA-B27:05	MRSGVLGMR	0.9973	0.6848	0.4551	395.17	0.5706	3.14	1/982	1/7748
SNV	Breast	ELP6_Q18H_7	HLA-B07:02	TPDRAEHGKL	0.9745	0.742	0.537	131.96	0.286	26.2	1/982	1/7748
SNV	Breast	MAP3K1_N1374S_8	HLA-C07:02	HRDVKGASL	0.909	0.9597	0.1184	24.86	0.0876	117.17	1/982	1/7748
SNV	Breast	ZNF791_V4L_9	HLA-A02:01	SLAFEDVSV	0.9877	0.7772	0.2355	3.08	0.0677	19.01	1/982	1/7748
SNV	Breast	ZNF791_V4L_7	HLA-C07:02	AFEDVSVSF	0.9474	0.9507	0.1356	135.28	0.2261	19.01	1/982	1/7748
SNV	Breast	ZSCAN12_E101D_8	HLA-A02:01	FLTILPEDL	0.9653	0.5405	0.6216	340.03	0.5929	4.93	1/982	1/7748
SNV	Breast	ZSCAN12_E101D_5	HLA-A02:01	ILPEDLQAWV	0.9862	0.8635	0.6927	42.23	0.2853	4.93	1/982	1/7748
SNV	Breast	DHX58_L291Q_7	HLA-C07:01	RRYNDAQLI	0.9958	0.73	0.1315	43.35	0.0603	6.09	1/982	1/7748
SNV	Breast	GUF1_D86N_6	HLA-B58:01	KSTLANRLL	0.9805	0.7927	0.4096	242.47	0.523	15.76	1/982	1/7748
SNV	Breast	HGSNAT_F507L_9	HLA-B58:01	RTKDILIRL	0.9935	0.9028	0.2442	31.36	0.2449	18.76	1/982	1/7748
SNV	Breast	IL10RB_V120I_3	HLA-A02:05	MQIEVLADSL	0.99	0.797	1.5309	221.85	0.3612	30.14	1/982	1/7748
SNV	Breast	PACSIN2_G450A_3	HLA-B58:01	KAADELTKM	0.9924	0.9462	0.3578	53.08	0.3096	19.41	1/982	1/7748
SNV	Breast	PHEX_V576A_3	HLA-B58:01	IGAIVGHEF	0.954	0.9765	0.5759	80.72	0.3646	5.15	1/982	1/7748
SNV	Breast	PLEKHB2_N197K_4	HLA-C06:02	YRDKDSDLAL	0.9772	0.9914	0.8285	390.85	0.1829	13.14	1/982	1/7748
SNV	Breast	PPRC1_H1462Y_6	HLA-B58:01	SLSPPYKRW	0.9665	0.8937	0.1409	9.21	0.1356	14.89	1/982	1/7748
SNV	Breast	PPRC1_H1462Y_7	HLA-B58:01	RSLSPPYKRW	0.9987	0.9323	0.1596	1.35	0.0138	14.89	1/982	1/7748
SNV	Breast	STK35_D419Y_1	HLA-B58:01	YFYMAPEVW	0.7201	0.9203	0.7202	141.98	0.4423	25.51	1/982	1/7748
SNV	Breast	STK35_D419Y_3	HLA-B58:01	GSYFYMAPEVW	0.9986	0.9735	1.3356	267.84	0.5402	25.51	1/982	1/7748
SNV	Breast	TSHZ3_N535Y_1	HLA-B58:01	YKAQNGTPSW	0.951	0.978	1.1918	6.05	0.1016	1.15	1/982	1/7748
SNV	Breast	TSHZ3_N535Y_2	HLA-B58:01	IYKAQNGTPSW	0.9899	0.9366	1.6948	90.03	0.379	1.15	1/982	1/7748
SNV	Breast	UBE2J2_A246V_4	HLA-B58:01	AAFVYTVKY	0.9332	0.8112	0.2886	60.65	0.3271	20.58	1/982	1/7748
SNV	Breast	VAC14_A391T_3	HLA-C07:01	ERTPVTLHL	0.9973	0.6639	0.0925	36.08	0.0537	16.57	1/982	1/7748
SNV	Breast	ERN1_P751T_8	HLA-B44:03	SEDCKENTTY	0.9953	0.9536	0.1039	49.93	0.2272	9.83	1/982	1/7748
SNV	Breast	PLEKHM1_R216W_5	HLA-B44:03	AELQWKESL	0.9978	0.9947	0.126	4.08	0.0778	8.67	1/982	1/7748
SNV	Breast	SCUBE1_H547N_5	HLA-B44:03	KEVSNITAEF	0.9969	0.9599	0.0262	7.98	0.1108	1.03	1/982	1/7748
SNV	Breast	SEC31B_R1134Q_2	HLA-B15:01	AQCVDAGSF	0.9974	0.899	0.1311	56.43	0.231	1.1	1/982	1/7748
SNV	Breast	ZZEF1_G999A_3	HLA-C03:03	YVAQFLASM	0.9982	0.9479	0.0295	5.04	0.0502	7.11	1/982	1/7748
SNV	Breast	ADAMTSL1_Q1300H_3	HLA-A32:01	TVHGVNVTI	0.9191	0.9049	0.2896	94.06	0.1401	1.37	1/982	1/7748
SNV	Breast	CASK_D624H_6	HLA-A30:01	AQFEYHPAK	0.9884	0.8649	0.2226	345.5	0.1307	29.1	1/982	1/7748
SNV	Breast	E2F1_Y168C_3	HLA-A32:01	RICDITNVL	0.9765	0.9395	0.1364	111.33	0.15	46.74	1/982	1/7748
SNV	Breast	E2F1_Y168C_4	HLA-C06:02	RRICDITNVL	0.935	0.9957	0.4279	318.95	0.1636	46.74	1/982	1/7748
SNV	Breast	FURIN_A723S_8	HLA-A32:01	VVAGLSCSF	0.8982	0.978	0.2594	424.15	0.2686	217.17	1/982	1/7748
SNV	Breast	NOD1_L384I_9	HLA-B13:02	SQLEANPNI	0.8421	0.6516	0.0686	20.85	0.0112	4.22	1/982	1/7748
SNV	Breast	PEX26_M96I_6	HLA-B58:02	QALAEIDRW	0.9965	0.9522	0.0478	489.04	0.0516	12	1/982	1/7748
SNV	Breast	PEX26_M96I_3	HLA-B13:02	AEIDRWQEV	0.9957	0.9767	0.0261	92.32	0.0481	12	1/982	1/7748
SNV	Breast	TTC7A_G651V_6	HLA-A32:01	GSFGEVLTM	0.9408	0.9948	0.5577	251.93	0.2202	6.61	1/982	1/7748
SNV	Breast	ZNF562_E72D_4	HLA-A32:01	VMLDNYMNL	0.728	0.9297	0.1395	173.61	0.1892	8.85	1/982	1/7748
SNV	Breast	ARL9_L79S_4	HLA-B13:02	HEASALSEV	0.995	0.8651	0.0767	446.3	0.1448	10.67	1/982	1/7748
SNV	Breast	CDCP1_C587F_8	HLA-B07:02	VPRDQVAFL	0.9983	0.59	0.028	1.71	0.0263	43.14	1/982	1/7748
SNV	Breast	CDCP1_C587F_8	HLA-B07:02	VPRDQVAFLTF	0.9995	0.6482	0.3335	191.9	0.3176	43.14	1/982	1/7748
SNV	Breast	DNM1_V124F_3	HLA-C07:02	LRFYSPHVL	0.8972	0.9638	0.0249	6.72	0.0317	2.48	1/982	1/7748
SNV	Breast	DNM1_V124F_1	HLA-C07:02	FYSPHVLNL	0.7874	0.9754	0.0011	1.96	0.0057	2.48	1/982	1/7748
SNV	Breast	DNM1_V124F_2	HLA-C07:02	RFYSPHVLNL	0.9322	0.9821	0.7356	183.99	0.2601	2.48	1/982	1/7748
SNV	Breast	DNM1_V124F_1	HLA-C06:02	FYSPHVLNL	0.548	0.9976	0.0088	29.77	0.0521	2.48	1/982	1/7748
SNV	Breast	P2RY10_A104S_8	HLA-C07:02	HHWPFQRSL	0.7887	0.9714	0.0548	43.94	0.1222	4.03	1/982	1/7748
SNV	Breast	PLEKHG6_R767P_7	HLA-B07:02	RPRKLTPAQL	0.9997	0.7695	0.0338	1.29	0.0127	25.13	1/982	1/7748
SNV	Breast	POLD1_V312M_8	HLA-C07:02	QRIAPLRML	0.9832	0.9766	0.1925	37.03	0.1111	27.25	1/982	1/7748
SNV	Breast	POP1_F1017L_10	HLA-B07:02	RPPASLQYRL	0.9909	0.5046	0.3718	172.46	0.3082	9.43	1/982	1/7748
SNV	Breast	SIGLEC9_N280I_2	HLA-C07:02	SIPPARLSL	0.6727	0.9079	0.659	345.31	0.3428	2.88	1/982	1/7748
SNV	Breast	SPATA5L1_L484R_3	HLA-B07:02	WPRKFPWEF	0.9976	0.7768	0.0882	60.86	0.2225	8.98	1/982	1/7748
SNV	Breast	TP53_D208G_5	HLA-C07:02	EYLDGRNTF	0.5665	0.8125	0.1834	26.14	0.0905	162.15	1/982	1/7748
SNV	Breast	TP53_D208G_1	HLA-C07:02	GRNTFRHSV	0.8343	0.9451	0.4496	291.08	0.3176	162.15	1/982	1/7748
SNV	Breast	ZKSCAN1_L77V_9	HLA-B07:02	GPREALSRV	0.9986	0.5449	0.1044	10.42	0.1188	37.11	1/982	1/7748
SNV	Breast	EHMT1_L777R_3	HLA-B07:02	SPRHAAAEA	0.9997	0.8115	0.0694	12.62	0.1316	11.36	1/982	1/7748
SNV	Breast	LMX1B_D360N_1	HLA-C08:02	NSDTSLTSL	0.9999	0.9192	0.0154	133.65	0.0743	7.45	1/982	1/7748
SNV	Breast	NBAS_G2057W_1	HLA-B07:02	WPRDPLKVL	0.9984	0.521	0.0437	1.25	0.0109	20.58	1/982	1/7748
SNV	Breast	NDUFV2_G248V_9	HLA-B07:02	GPGFGVQAV	0.9937	0.5147	0.1843	102.65	0.2659	32.88	1/982	1/7748
SNV	Breast	NDUFV2_G248V_9	HLA-B07:02	GPGFGVQAVL	0.9864	0.5638	0.2381	71.54	0.2362	32.88	2/982	2/7748
SNV	Breast	NDUFV2_G248V_9	HLA-B07:02	GPGFGVQAVL	0.9864	0.5638	0.2381	71.54	0.2362	32.88	2/982	2/7748
SNV	Breast	PRDM4_G208A_4	HLA-C08:02	STDAMAEEL	0.9998	0.954	0.0045	72.71	0.0577	26.67	1/982	1/7748
SNV	Breast	TNRC6B_D291V_1	HLA-C07:02	VRIGPGSGF	0.8052	0.8919	0.1019	12.78	0.0586	4.7	1/982	1/7748
SNV	Breast	USP1_C506S_3	HLA-C07:02	YFSENCHHY	0.6691	0.7	0.052	344.58	0.3425	179.2	1/982	1/7748
SNV	Breast	DRP2_V292M_10	HLA-B35:01	SPMKDGVKLM	0.8592	0.7747	0.7678	140.65	0.3424	1.07	1/982	1/7748
SNV	Breast	DRP2_V292M_2	HLA-C15:02	LMNDLAHQL	0.9981	0.9233	0.2549	27.87	0.1832	1.07	1/982	1/7748
SNV	Breast	ZDHHC1_L250R_4	HLA-C15:02	AALRILLGL	0.9987	0.9518	0.3683	180.05	0.4984	7.17	1/982	1/7748
SNV	Breast	ABL2_D227Y_7	HLA-A30:01	RINTTAYGK	0.9971	0.8286	0.0714	322.24	0.123	7.81	1/982	1/7748
SNV	Breast	CPSF2_R211K_7	HLA-A30:01	ATYVQPKRK	0.9912	0.804	0.3847	310.93	0.1206	8.93	1/982	1/7748
SNV	Breast	CTDSP1_M229I_1	HLA-C05:01	ISDTELHDL	0.9999	0.8798	0.0194	31.36	0.144	71.07	1/982	1/7748
SNV	Breast	HTT_E2465K_3	HLA-A24:02	QFKETWATL	0.9227	0.8138	0.2061	115	0.4723	11.87	1/982	1/7748
SNV	Breast	MAPK8_E261K_5	HLA-A30:01	RTYVKNRPK	0.9992	0.7637	0.0021	16.4	0.0103	5.53	1/982	1/7748
SNV	Breast	NCAPG2_E724K_8	HLA-B13:02	GQVGHILKL	0.9558	0.5952	0.0872	161.31	0.0669	12.93	1/982	1/7748
SNV	Breast	NPAT_E363K_4	HLA-C05:01	LADKTNLAV	0.9999	0.9896	0.0064	2.12	0.027	3.81	1/982	1/7748
SNV	Breast	NPAT_E363K_5	HLA-C05:01	VLADKTNLAV	0.9994	0.9896	1.0994	295.73	0.337	3.81	1/982	1/7748
SNV	Breast	PCDHGB7_E203K_1	HLA-A30:01	KTQSAHHLV	0.986	0.8596	0.0493	185.68	0.0845	1.29	1/982	1/7748
SNV	Breast	POC5_I144M_3	HLA-B18:01	HEMLVSDF	0.9983	0.8515	0.0372	62.15	0.1282	4.46	1/982	1/7748
SNV	Breast	POC5_I144M_3	HLA-B18:01	HEMLVSDFL	0.8924	0.8329	0.1044	163.19	0.1869	4.46	1/982	1/7748
SNV	Breast	POC5_I144M_7	HLA-C05:01	HTDAHEMLV	0.9999	0.9675	0.0278	3.52	0.0442	4.46	1/982	1/7748
SNV	Breast	RAI2_P166L_9	HLA-C05:01	GAEDPEAQL	0.9999	0.9274	0.0781	263.32	0.3223	14.8	1/982	1/7748
SNV	Breast	SOD1_I105M_7	HLA-C05:01	SIEDSVMSL	0.9999	0.9531	0.0311	14.32	0.1076	303.39	1/982	1/7748
SNV	Breast	TBCD_D398N_4	HLA-C05:01	LADNVVGSV	0.9998	0.9821	0.0246	9.09	0.0828	13.63	1/982	1/7748
SNV	Breast	TBCD_D398N_4	HLA-C05:01	LADNVVGSVL	0.9999	0.9744	0.049	187.35	0.2812	13.63	1/982	1/7748
SNV	Breast	UNC5C_V701I_7	HLA-B18:01	LEYSIRIY	0.9941	0.7949	0.1025	10.33	0.0634	2.19	1/982	1/7748
SNV	Breast	WWC1_A659T_1	HLA-A30:01	TTRIQIALK	0.9977	0.7457	0.0205	76.69	0.0371	16.61	1/982	1/7748
SNV	Breast	ZNF772_W481C_8	HLA-A30:01	RASLIRHCK	0.9957	0.9204	0.0639	360.16	0.1367	4.1	1/982	1/7748
SNV	Breast	IL10RB_R130C_9	HLA-A02:01	VLADSLHMC	0.939	0.5976	0.7719	87.36	0.3741	54.7	1/982	1/7748
SNV	Breast	IL10RB_R130C_8	HLA-C05:01	LADSLHMCF	0.9991	0.9457	0.2047	61.18	0.1837	54.7	1/982	1/7748
SNV	Breast	NNT_F1057L_2	HLA-A02:01	ILYKPNTAM	0.9114	0.5607	0.8874	102.73	0.395	23.32	1/982	1/7748
SNV	Breast	NNT_F1057L_2	HLA-A02:01	ILYKPNTAML	0.9532	0.5999	1.7136	394.11	0.623	23.32	1/982	1/7748
SNV	Breast	NNT_F1057L_9	HLA-C05:01	YAAVDNPIL	0.9843	0.9333	0.4109	188.73	0.282	23.32	1/982	1/7748
SNV	Breast	NNT_F1057L_2	HLA-C05:01	ILYKPNTAM	0.6617	0.8962	1.1645	289.03	0.3341	23.32	1/982	1/7748
SNV	Breast	NNT_F1057L_2	HLA-C01:02	ILYKPNTAM	0.6336	0.8997	0.3394	257.96	0.0217	23.32	1/982	1/7748
SNV	Breast	PDZRN3_R647C_4	HLA-B27:05	ERFCELLEL	0.9998	0.764	0.2929	149.29	0.4521	2.19	1/982	1/7748
SNV	Breast	ARHGAP23_N999K_7	HLA-C05:01	FTDDKYKDF	0.9986	0.7972	0.0334	14.1	0.1069	4.73	1/982	1/7748
SNV	Breast	BDKRB2_R378L_3	HLA-B44:02	VELQIHKLQDW	0.9993	0.7963	0.1815	278.34	0.3502	3.91	1/982	1/7748
SNV	Breast	HRH1_S145L_5	HLA-B57:01	KTRALATIL	0.9707	0.9534	0.5757	42.27	0.219	1.25	1/982	1/7748
SNV	Breast	HRH1_S145L_3	HLA-B57:01	RALATILGAW	0.9998	0.9877	0.0255	18.02	0.1463	1.25	1/982	1/7748
SNV	Breast	IPO8_E375Q_7	HLA-C05:01	WQEDPYQYI	0.9957	0.965	0.7431	382.03	0.3694	12.53	1/982	1/7748
SNV	Breast	ITGB1BP2_A266S_5	HLA-B57:01	RVFQSQMKL	0.9936	0.9642	0.8109	47.78	0.2284	1.18	1/982	1/7748
SNV	Breast	ITGB1BP2_A266S_5	HLA-B57:01	RVFQSQMKLW	0.9999	0.9828	0.0462	2.7	0.0329	1.18	1/982	1/7748
SNV	Breast	NAPEPLD_V272F_8	HLA-A02:01	VLWGSWSFL	0.9882	0.6799	0.1104	201.82	0.5084	4.69	1/982	1/7748
SNV	Breast	NAPEPLD_V272F_9	HLA-B57:01	KVLWGSWSF	0.9895	0.997	0.1948	208.98	0.3721	4.69	1/982	1/7748
SNV	Breast	NAPEPLD_V272F_5	HLA-B57:01	GSWSFLGPW	0.9967	0.9969	0.0119	301.14	0.4229	4.69	1/982	1/7748
SNV	Breast	PLXNB1_V2132F_9	HLA-B57:01	IAAAVENKF	0.9965	0.9307	0.2291	11.7	0.1172	27.01	1/982	1/7748
SNV	Breast	GYS1_G140E_9	HLA-A02:01	ELWDTCNIEV	0.9805	0.619	0.702	144.32	0.4515	41.3	1/982	1/7748
SNV	Breast	STAT6_L29F_8	HLA-B08:01	FPQHLRHFL	0.9938	0.5343	0.0318	427.59	0.3127	81.32	1/982	1/7748
SNV	Breast	AHI1_R1074S_2	HLA-B58:01	HSGDIIRVF	0.9855	0.7121	0.235	5.94	0.1	7.89	1/982	1/7748
SNV	Breast	AHI1_R1074S_2	HLA-B58:01	HSGDIIRVFF	0.9974	0.6683	0.5979	450.97	0.6389	7.89	1/982	1/7748
SNV	Breast	AKAP13_P1732L_3	HLA-B58:01	HSLSKKDSEW	0.9982	0.982	0.2442	18.76	0.1981	46.4	1/982	1/7748
SNV	Breast	AKAP13_P1732L_9	HLA-C07:02	NYNFLPHSL	0.6488	0.9123	0.0756	15.95	0.0682	46.4	1/982	1/7748
SNV	Breast	ARHGAP23_R644H_5	HLA-C07:02	RLPNHIPSL	0.9036	0.9177	0.3785	44.98	0.1237	17.26	1/982	1/7748
SNV	Breast	ARHGAP23_R644H_2	HLA-C07:02	NHIPSLRML	0.6295	0.8436	0.5032	351.8	0.3455	17.26	1/982	1/7748
SNV	Breast	ARHGAP23_R644H_6	HLA-C07:02	RRLPNHIPSL	0.9974	0.9234	0.1019	66.03	0.1571	17.26	1/982	1/7748
SNV	Breast	ERLIN1_K296N_6	HLA-B58:01	IASNSNIYF	0.9872	0.5412	0.0719	5.92	0.0997	120.62	1/982	1/7748
SNV	Breast	FOCAD_I5M_5	HLA-C07:02	KRFEFPNSL	0.9872	0.9704	0.0008	2.23	0.0068	7.26	3/982	3/7748
SNV	Breast	FOCAD_I5M_5	HLA-C07:02	KRFEFPNSL	0.9872	0.9704	0.0008	2.23	0.0068	7.26	3/982	3/7748
SNV	Breast	FOCAD_I5M_5	HLA-C07:02	KRFEFPNSL	0.9872	0.9704	0.0008	2.23	0.0068	7.26	3/982	3/7748
SNV	Breast	GALNT14_R129M_7	HLA-C07:02	ARSTLLMTI	0.9708	0.9473	0.1925	165.61	0.2479	17.33	1/982	1/7748
SNV	Breast	GNAI1_R105C_6	HLA-B58:01	RADDACQLF	0.9172	0.9551	0.1745	64.99	0.3362	9.3	1/982	1/7748
SNV	Breast	GPNMB_S492L_8	HLA-B07:02	VPDRDPALPL	0.9966	0.7831	0.2555	1.74	0.027	113.1	1/982	1/7748
SNV	Breast	MYO6_V344I_6	HLA-B58:01	RVVAGILHL	0.9912	0.886	0.5493	97.44	0.3894	54.21	1/982	1/7748
SNV	Breast	PTPRA_D793H_7	HLA-B58:01	VVQEYIHAF	0.8338	0.8411	0.4955	229.07	0.5131	134.94	1/982	1/7748
SNV	Breast	PTPRA_D793H_1	HLA-B58:01	HAFSDYANF	0.9781	0.9462	0.0865	17.47	0.19	134.94	1/982	1/7748
SNV	Breast	PTPRA_D793H_7	HLA-C07:02	VVQEYIHAF	0.7466	0.9408	1.0224	158.97	0.2435	134.94	1/982	1/7748
SNV	Breast	SAFB2_S787L_5	HLA-C07:02	RREGLRPMM	0.9047	0.9613	0.2294	244.53	0.2935	30.49	1/982	1/7748
SNV	Breast	SOGA1_S1648C_7	HLA-B58:01	RLHPSECSW	0.9923	0.9799	0.0655	15.96	0.1797	49.91	1/982	1/7748
SNV	Breast	SPTAN1_E1564Q_9	HLA-B58:01	FSRDVDEIQAW	0.9996	0.9586	0.1644	51.69	0.3061	78.76	1/982	1/7748
SNV	Breast	ZC3H12C_P704L_9	HLA-C07:02	KFHHKPPLL	0.846	0.971	0.0926	128.54	0.2206	3.02	1/982	1/7748
SNV	Breast	ZC3H12C_P704L_7	HLA-C07:02	HHKPPLLHL	0.8388	0.9724	0.028	78.69	0.1715	3.02	1/982	1/7748
SNV	Breast	ZNF33A_E339D_5	HLA-B58:01	KAFWDKSHL	0.9889	0.9567	0.209	464.53	0.6455	24.94	1/982	1/7748
SNV	Breast	ACAP1_Q204L_4	HLA-B39:01	THFLQGHEEL	0.9994	0.9905	0.1396	19.79	0.0781	8.54	1/982	1/7748
SNV	Breast	ACAP1_Q204L_3	HLA-C07:02	HFLQGHEEL	0.6681	0.9908	0.2351	89.68	0.1836	8.54	1/982	1/7748
SNV	Breast	CDH11_S172Y_3	HLA-B39:01	ERYNVGTSV	0.9979	0.945	0.0976	23.19	0.0858	34.38	1/982	1/7748
SNV	Breast	CDH11_S172Y_9	HLA-C07:02	YHANVPERY	0.6957	0.9102	0.2811	64.12	0.1547	34.38	1/982	1/7748
SNV	Breast	CDH11_S172Y_3	HLA-C07:02	ERYNVGTSV	0.6572	0.9567	0.8174	264.46	0.3034	34.38	1/982	1/7748
SNV	Breast	DENND5A_S1085P_2	HLA-B07:02	QPPSVIRRL	0.9742	0.6097	0.3186	314.97	0.3613	31.09	1/982	1/7748
SNV	Breast	KAT6A_P1775L_9	HLA-B39:01	HAMPYSHSL	0.9897	0.9248	0.1346	20.19	0.079	28.38	1/982	1/7748
SNV	Breast	KAT6A_P1775L_9	HLA-B07:02	HAMPYSHSL	0.9919	0.5586	0.1703	56.52	0.2162	28.38	1/982	1/7748
SNV	Breast	KAT6A_P1775L_9	HLA-C07:02	HAMPYSHSL	0.9919	0.9625	0.2455	23.87	0.0853	28.38	1/982	1/7748
SNV	Breast	SZT2_K2756N_5	HLA-B39:01	ERQMNMENL	0.9985	0.8249	0.3604	304.05	0.2615	8.7	1/982	1/7748
SNV	Breast	TRIQK_G2D_10	HLA-B39:01	DRKDAATIKL	0.9645	0.6786	0.7259	479.13	0.3063	5.6	1/982	1/7748
SNV	Breast	URB2_S303L_9	HLA-B39:01	LHTSVVANL	0.9995	0.9648	0.0483	56.54	0.1328	14.56	1/982	1/7748
SNV	Breast	YY1AP1_Q171H_2	HLA-B39:01	QHMQQHVQL	0.9996	0.9645	0.0043	3.24	0.0207	104.43	1/982	1/7748
SNV	Breast	YY1AP1_Q171H_1	HLA-C07:02	HMQQHVQLL	0.6774	0.9821	0.1285	438.49	0.3781	104.43	1/982	1/7748
SNV	Breast	ZCCHC2_L902V_1	HLA-B07:02	VPAAGLSAA	0.9954	0.5372	0.0872	23.63	0.1642	10.95	1/982	1/7748
SNV	Breast	ZNF22_P138L_9	HLA-B39:01	QRIHTGEKL	0.9892	0.9428	0.0659	90.35	0.1657	67.7	1/982	1/7748
SNV	Breast	ZNF689_R384Q_3	HLA-B39:01	FRQSGSLAI	0.9979	0.973	0.0124	3.61	0.0224	7.26	1/982	1/7748
SNV	Breast	ZNF689_R384Q_3	HLA-C07:02	FRQSGSLAI	0.908	0.9711	0.1528	16.41	0.0694	7.26	1/982	1/7748
SNV	Breast	ZNF77_Q477E_7	HLA-C07:02	KAFSHAEYF	0.9619	0.952	0.2234	166.79	0.2487	12.36	1/982	1/7748
SNV	Breast	CCR1_L351F_9	HLA-B35:08	SPSTGEHEF	0.981	0.9088	0.0165	2.14	0.016	3.97	1/982	1/7748
SNV	Breast	CCR1_L351F_10	HLA-B35:08	TSPSTGEHEF	0.9621	0.9316	0.9447	377.98	0.2898	3.97	1/982	1/7748
SNV	Breast	CENPO_E81V_2	HLA-C12:03	VVPNQTVEI	0.9604	0.9648	1.0691	145.64	0.6269	2.78	1/982	1/7748
SNV	Breast	CEPT1_C122S_5	HLA-A24:02	AYIASACGLF	0.997	0.7792	0.0616	18.32	0.2669	7.72	1/982	1/7748
SNV	Breast	CGNL1_A249V_8	HLA-B15:03	KERVGEEVLF	0.9539	0.8804	1.7386	273.58	0.7948	7.32	1/982	1/7748
SNV	Breast	CGNL1_A249V_1	HLA-C12:03	VLFTSGRPL	0.9842	0.9739	0.8424	374.91	0.9601	7.32	1/982	1/7748
SNV	Breast	DIRC2_D226N_2	HLA-B15:03	KNRIEAVLY	0.6978	0.9248	1.0501	251.59	0.7746	9.29	1/982	1/7748
SNV	Breast	DPP3_L93M_5	HLA-A02:05	YQAFMVYAA	0.9787	0.674	0.8229	267.61	0.3895	34.47	1/982	1/7748
SNV	Breast	DPP3_L93M_2	HLA-B15:03	FMVYAAGVY	0.8026	0.8582	0.197	113.64	0.5771	34.47	1/982	1/7748
SNV	Breast	E2F1_P368L_9	HLA-B15:03	SRMGSLRAL	0.6629	0.6755	1.1556	44.04	0.3984	4.01	1/982	1/7748
SNV	Breast	EXT1_H719R_6	HLA-C12:03	YMPLIRSQM	0.9983	0.9907	0.5175	73.77	0.4483	12.95	1/982	1/7748
SNV	Breast	GAPVD1_M1296I_6	HLA-A02:05	FLYGAIAQDV	0.9984	0.7614	0.0389	335.29	0.4301	9.62	1/982	1/7748
SNV	Breast	MAGED1_M144K_7	HLA-B15:03	AANKSEKAF	0.8386	0.8021	0.4386	102.01	0.5543	94.47	1/982	1/7748
SNV	Breast	MED12_S1120R_5	HLA-B35:08	NVDVRDLSF	0.9722	0.6988	0.6765	480.66	0.3137	27.54	1/982	1/7748
SNV	Breast	METTL7A_A215V_2	HLA-C12:03	RVSFSKLKL	0.6467	0.9812	1.8123	298.2	0.8762	51.9	1/982	1/7748
SNV	Breast	MYO5C_V395I_3	HLA-C12:03	QAINARDAL	0.9947	0.9826	0.4894	88.01	0.4895	15.29	1/982	1/7748
SNV	Breast	OSBP_L444W_9	HLA-B35:08	MPVNFNEPW	0.9866	0.9244	0.0446	27.32	0.1047	53.27	1/982	1/7748
SNV	Breast	OSBP_L444W_6	HLA-C04:01	NFNEPWSML	0.6829	0.6786	0.2751	221.7	0.1059	53.27	1/982	1/7748
SNV	Breast	PCDHB13_P246L_7	HLA-B35:08	APEFEQLFY	0.9679	0.8447	0.2602	6.63	0.0541	2.21	1/982	1/7748
SNV	Breast	PCDHB8_P246L_7	HLA-B35:08	APEFEQLFY	0.9679	0.8447	0.2602	6.63	0.0541	1.01	1/982	1/7748
SNV	Breast	PFKFB1_S436A_1	HLA-C12:03	AIYLNVEAV	0.9707	0.9868	1.4964	181.92	0.6974	1.03	1/982	1/7748
SNV	Breast	PFKFB4_A407E_6	HLA-A02:05	FLDKAEEQL	0.989	0.5946	0.4073	4.67	0.0377	7.17	1/982	1/7748
SNV	Breast	PFKFB4_A407E_6	HLA-C04:01	FLDKAEEQL	0.9999	0.8329	0.0126	233.36	0.1083	7.17	1/982	1/7748
SNV	Breast	PFKFB4_A407E_7	HLA-C04:01	YFLDKAEEQL	0.9975	0.825	0.2895	76.03	0.0667	7.17	1/982	1/7748
SNV	Breast	PHKA2_L426F_9	HLA-B35:08	LAAGEIDPF	0.9828	0.9271	0.0826	142.01	0.2001	11.12	1/982	1/7748
SNV	Breast	PHKA2_L426F_6	HLA-B15:03	GEIDPFNRRF	0.9802	0.6921	1.2084	89.71	0.5273	11.12	1/982	1/7748
SNV	Breast	PI4KA_W799L_7	HLA-B15:03	KLFRDFLLY	0.5808	0.5887	0.2706	21.71	0.2729	10.47	1/982	1/7748
SNV	Breast	PIK3CA_E726K_1	HLA-C12:03	KTQKVQMKF	0.5276	0.9571	0.6904	406.67	0.9907	7.05	1/982	3/7748
SNV	Breast	PIK3IP1_K195M_4	HLA-C12:03	YSYMRGKDL	0.9429	0.8757	0.2999	5.37	0.0646	31.81	1/982	1/7748
SNV	Breast	RASGRP3_E104V_2	HLA-B15:03	RVVASQLGY	0.6628	0.7585	0.4039	105.55	0.5615	2.32	1/982	1/7748
SNV	Breast	REV1_T326A_3	HLA-B15:03	KSASSVSTF	0.9838	0.7658	0.0426	8.56	0.1514	9.23	1/982	1/7748
SNV	Breast	REV1_T326A_4	HLA-B15:03	TKSASSVSTF	0.9541	0.7618	0.6916	98.83	0.5477	9.23	1/982	1/7748
SNV	Breast	REV1_T326A_3	HLA-C12:03	KSASSVSTF	0.8429	0.9797	0.0922	13.94	0.1641	9.23	1/982	1/7748
SNV	Breast	RNF213_F382L_2	HLA-A02:05	VLFHAIISL	0.9868	0.5253	0.0361	66.96	0.2128	18.66	1/982	1/7748
SNV	Breast	RNF213_F382L_9	HLA-B35:08	SPGGGVTVL	0.9312	0.7801	0.1149	146.55	0.2031	18.66	1/982	1/7748
SNV	Breast	RNF213_F382L_2	HLA-C12:03	VLFHAIISL	0.9793	0.9797	0.3841	62.52	0.4096	18.66	1/982	1/7748
SNV	Breast	SDK1_P579L_2	HLA-A02:05	HLPEDHVVI	0.8575	0.6856	1.4859	357.87	0.4427	1.31	1/982	1/7748
SNV	Breast	SEC22A_C264S_8	HLA-A02:05	FLTFGLISL	0.9834	0.8052	0.0296	27.42	0.1437	8.14	1/982	1/7748
SNV	Breast	SLC29A1_M306L_5	HLA-A02:05	ITIGLFPAV	0.9931	0.7728	0.106	24.65	0.136	59.25	1/982	1/7748
SNV	Breast	SLC29A1_M306L_2	HLA-A02:05	GLFPAVTVEV	0.9986	0.7651	0.2273	44.35	0.1769	59.25	1/982	1/7748
SNV	Breast	SLC29A1_M306L_9	HLA-C12:03	FIFTITIGL	0.9748	0.9823	0.3984	28.05	0.2636	59.25	1/982	1/7748
SNV	Breast	SLC29A1_M306L_5	HLA-C12:03	ITIGLFPAV	0.987	0.9622	0.339	54.49	0.3833	59.25	1/982	1/7748
SNV	Breast	SNX9_A375T_1	HLA-C12:03	TGVMIFSTM	0.8183	0.9819	1.7994	342.26	0.9257	57.18	1/982	1/7748
SNV	Breast	SPAST_T513I_6	HLA-B35:08	LPNEEIRLL	0.9867	0.7424	0.1804	43.49	0.1246	10.18	1/982	1/7748
SNV	Breast	TET3_S1581P_4	HLA-A24:02	AWQPFGLPL	0.9738	0.515	0.203	129.31	0.4887	6.16	1/982	1/7748
SNV	Breast	TET3_S1581P_9	HLA-B15:03	SQLDRAWQPF	0.9872	0.8051	0.298	70.91	0.4815	6.16	1/982	1/7748
SNV	Breast	ZNF646_S631R_8	HLA-C12:03	KSYRHSGRL	0.6314	0.9244	0.963	297.82	0.8758	13.63	1/982	1/7748
SNV	Breast	ZNF652_V110I_1	HLA-C12:03	ISYKREQII	0.9028	0.9369	0.5283	282.45	0.8576	22.49	1/982	1/7748
SNV	Breast	ZNF786_L97Q_2	HLA-B15:03	QQFWGSQQAM	0.9662	0.93	0.2778	79.83	0.5027	7	1/982	1/7748
SNV	Breast	ZNF786_L97Q_10	HLA-C04:01	HFDPGFEEQQF	1	0.8984	0.0778	47.22	0.0547	7	1/982	1/7748
SNV	Breast	AKAP11_V896I_5	HLA-A68:02	TSLEITKMV	0.9882	0.7414	0.2714	258.09	0.3559	12.23	1/982	1/7748
SNV	Breast	AKAP11_V896I_6	HLA-A68:02	MTSLEITKMV	0.9878	0.6112	1.0529	302.7	0.3809	12.23	1/982	1/7748
SNV	Breast	CCDC40_D284A_6	HLA-A68:02	VVLDPAHPL	0.8476	0.6213	0.1669	358.35	0.4087	14.01	1/982	1/7748
SNV	Breast	CCDC40_D284A_5	HLA-C04:01	VLDPAHPLM	0.9999	0.8249	0.0121	3.78	0.0096	14.01	1/982	1/7748
SNV	Breast	DOCK10_S426N_6	HLA-B35:01	EPFFVNVAL	0.9778	0.815	0.1113	9.09	0.1218	13.1	1/982	1/7748
SNV	Breast	DOCK10_S426N_6	HLA-B35:01	EPFFVNVALY	0.9824	0.8249	0.2475	48.83	0.2427	13.1	1/982	1/7748
SNV	Breast	DRG2_E164V_4	HLA-B44:03	KELVSVGIRL	0.8729	0.9362	0.2355	192.32	0.3339	11.79	1/982	1/7748
SNV	Breast	FPGS_G122D_3	HLA-C04:01	SYDLKTGF	0.9997	0.7184	0.1022	287.7	0.1181	53.81	1/982	1/7748
SNV	Breast	FPGS_G122D_3	HLA-C04:01	SYDLKTGFF	0.991	0.7495	0.0213	3.34	0.0087	53.81	1/982	1/7748
SNV	Breast	LRTOMT_L104V_7	HLA-A68:02	LTTFFNVSV	0.9963	0.6063	0.0255	96.22	0.2231	18.82	1/982	1/7748
SNV	Breast	MACF1_E4944D_6	HLA-B35:01	DPVQLDSSL	0.9504	0.5944	0.4875	211.65	0.3842	14.42	1/982	1/7748
SNV	Breast	NDNF_R25W_4	HLA-B35:01	LPTWDEELF	0.9937	0.9735	0.1008	27.07	0.1961	1.59	1/982	1/7748
SNV	Breast	NDNF_R25W_2	HLA-C04:01	TWDEELFQM	0.9995	0.8935	0.0034	5.26	0.0129	1.59	1/982	1/7748
SNV	Breast	SLC6A6_G109A_4	HLA-B44:03	SEGAITCW	0.9997	0.9589	0.3448	327.21	0.3756	14.58	1/982	1/7748
SNV	Breast	SNX29_R438Q_7	HLA-B35:01	LPDPGLQY	0.9896	0.8878	0.382	6.89	0.1055	5.73	1/982	1/7748
SNV	Breast	SNX29_R438Q_9	HLA-B35:01	HVLPDPGLQY	0.99	0.9314	0.2116	99.7	0.3071	5.73	1/982	1/7748
SNV	Breast	STARD7_P156S_2	HLA-B35:01	RSITGTHLY	0.9806	0.9297	0.1624	313.98	0.4303	88.28	1/982	1/7748
SNV	Breast	TRIP11_I63V_8	HLA-A68:02	EIEAIHAVL	0.9292	0.6037	1.5649	449.91	0.4506	12.75	1/982	1/7748
SNV	Breast	TRIP11_I63V_9	HLA-B44:03	KEIEAIHAV	0.9622	0.8696	0.1074	2.55	0.0511	12.75	1/982	1/7748
SNV	Breast	TRIP11_I63V_9	HLA-B44:03	KEIEAIHAVL	0.99	0.9588	0.1475	13.88	0.1399	12.75	1/982	1/7748
SNV	Breast	ABCA3_R550T_5	HLA-C03:03	RAAVTDLNL	0.973	0.9906	0.6035	41.57	0.1877	21.18	1/982	1/7748
SNV	Breast	ABCA3_R550T_3	HLA-C03:03	AVTDLNLNL	0.9984	0.9814	0.3257	438.25	0.4813	21.18	1/982	1/7748
SNV	Breast	ANKRD35_I96M_9	HLA-C03:03	STALHLATM	0.9981	0.9821	0.0794	87.8	0.261	10.93	1/982	1/7748
SNV	Breast	ANKRD35_I96M_9	HLA-C12:02	STALHLATM	0.9718	0.9655	0.0346	97.11	0.1783	10.93	1/982	1/7748
SNV	Breast	APP_Q567H_5	HLA-B18:01	DELLHKEQNY	0.9904	0.8337	0.149	142.84	0.1793	213.57	1/982	1/7748
SNV	Breast	CCNJ_S310L_9	HLA-C03:03	QIVSTTHTL	0.9975	0.9777	0.1474	89.15	0.2625	2.12	1/982	1/7748
SNV	Breast	CCNJ_S310L_5	HLA-C03:03	TTHTLSYTL	0.9956	0.9732	0.2749	494.29	0.5008	2.12	1/982	1/7748
SNV	Breast	COPZ1_E85K_4	HLA-C03:03	SSYKNELML	0.9972	0.9946	0.215	65.03	0.2295	176.83	1/982	1/7748
SNV	Breast	DST_E1148V_9	HLA-B18:01	HESVFRITV	0.9006	0.9441	0.0838	380.47	0.2424	7.43	1/982	1/7748
SNV	Breast	GREB1L_I1541M_6	HLA-C03:03	HAMEGMSHL	0.9999	0.9946	0.0032	1.34	0.0067	4	1/982	1/7748
SNV	Breast	GREB1L_I1541M_6	HLA-C12:02	HAMEGMSHL	0.999	0.991	0.0086	6.3	0.0181	4	1/982	1/7748
SNV	Breast	KIAA1109_R3026T_7	HLA-B18:01	FELPNHTL	0.997	0.9199	0.1211	324.65	0.2315	4.01	1/982	1/7748
SNV	Breast	KIAA1109_R3026T_7	HLA-B18:01	FELPNHTLRF	0.9781	0.7131	0.1913	90.77	0.1465	4.01	1/982	1/7748
SNV	Breast	KIAA1109_R3026T_9	HLA-C03:03	FTFELPNHTL	0.9997	0.9849	0.1228	81.97	0.2538	4.01	1/982	1/7748
SNV	Breast	KIAA1109_R3026T_9	HLA-C12:02	FTFELPNHTL	0.9995	0.979	0.1673	265.04	0.3388	4.01	1/982	1/7748
SNV	Breast	KLF12_E352K_3	HLA-A24:02	TWKGCTWKF	0.9891	0.5177	0.0171	16.13	0.2559	4.26	1/982	1/7748
SNV	Breast	MAP3K3_E614Q_1	HLA-B18:01	QELLTHHF	0.999	0.9151	0.0481	234.62	0.2092	16.53	1/982	1/7748
SNV	Breast	NSUN2_D626N_5	HLA-C03:03	VSMENVKIL	0.9997	0.9888	0.1156	12.49	0.0965	24.04	1/982	1/7748
SNV	Breast	NSUN2_D626N_5	HLA-C12:02	VSMENVKIL	0.9938	0.9723	0.1851	423.88	0.4351	24.04	1/982	1/7748
SNV	Breast	PCSK5_E1809Q_7	HLA-B18:01	EEDQVIQY	0.9859	0.8095	0.0892	11.47	0.066	1.25	1/982	1/7748
SNV	Breast	PCSK5_E1809Q_8	HLA-B18:01	FEEDQVIQY	0.9947	0.8232	0.0208	1.96	0.0077	1.25	1/982	1/7748
SNV	Breast	PI16_P339S_5	HLA-C03:03	NSLDSKMSL	0.9993	0.9861	0.1756	145.81	0.318	61.79	1/982	1/7748
SNV	Breast	PIEZO1_R703K_4	HLA-C12:02	YFHKPFMQL	0.8946	0.962	0.8618	307.12	0.3687	35.78	1/982	1/7748
SNV	Breast	PIGG_Q576H_4	HLA-B18:01	EEHHTWYF	0.9985	0.8766	0.1181	121.92	0.1682	7.83	1/982	1/7748
SNV	Breast	PIGG_Q576H_6	HLA-B18:01	VEEEHHTWY	0.9854	0.9035	0.0808	37.91	0.1079	7.83	1/982	1/7748
SNV	Breast	PIGG_Q576H_5	HLA-B18:01	EEEHHTWYF	0.9785	0.8781	0.0509	10.3	0.0633	7.83	1/982	1/7748
SNV	Breast	SLC36A1_M429I_4	HLA-B18:01	SEGISPLTIF	0.8053	0.9404	0.3606	357.68	0.2381	3.13	1/982	1/7748
SNV	Breast	SLMAP_L98V_2	HLA-C03:03	IVSGDIIQF	0.9964	0.8945	0.3118	367.38	0.4527	4.58	1/982	1/7748
SNV	Breast	SLMAP_L98V_2	HLA-C12:02	IVSGDIIQF	0.9758	0.8589	0.1024	126.64	0.2095	4.58	1/982	1/7748
SNV	Breast	SYMPK_E273K_1	HLA-C03:03	KVIQAYETL	0.9947	0.9906	0.1623	25	0.1549	36.59	1/982	1/7748
SNV	Breast	SYMPK_E273K_4	HLA-C12:02	FMSKVIQAY	0.9706	0.909	0.0269	13.42	0.0389	36.59	1/982	1/7748
SNV	Breast	SYMPK_E273K_1	HLA-C12:02	KVIQAYETL	0.6623	0.9728	0.432	155.23	0.2365	36.59	1/982	1/7748
SNV	Breast	TNXB_E1005K_10	HLA-A11:01	RVPEGPGAHK	0.9984	0.58	0.2664	73.03	0.2717	4.32	1/982	1/7748
SNV	Breast	TXNL4B_A67E_2	HLA-B18:01	TEVYTQYF	0.9988	0.8426	0.2268	160.92	0.1861	7.52	1/982	1/7748
SNV	Breast	TXNL4B_A67E_4	HLA-B18:01	DQTEVYTQY	0.9901	0.8286	0.1114	34.33	0.1039	7.52	1/982	1/7748
SNV	Breast	UGT2B28_M316I_1	HLA-C03:03	ITAERANVI	0.9816	0.9801	0.3473	372.43	0.4549	2.08	1/982	1/7748
SNV	Breast	WBSCR17_I304M_3	HLA-A24:02	MYMSPPKDWW	0.9924	0.5623	0.1457	26.11	0.2973	1.65	1/982	1/7748
SNV	Breast	ZNF653_S436L_9	HLA-B18:01	EELDGSDML	0.7538	0.6333	0.2725	232.99	0.2087	9.91	1/982	1/7748
SNV	Breast	LARP4B_G383V_9	HLA-A02:01	LVTPFPNTV	0.9793	0.6203	0.6574	376.16	0.6127	15.84	1/982	1/7748
SNV	Breast	LARP4B_G383V_9	HLA-C12:03	LVTPFPNTV	0.9572	0.9883	0.143	21.52	0.2206	15.84	1/982	1/7748
SNV	Breast	LARP4B_G383V_8	HLA-C12:03	VTPFPNTVF	0.8002	0.9845	0.3644	213.71	0.7581	15.84	1/982	1/7748
SNV	Breast	PTPN14_S534L_6	HLA-C12:03	GASAILHTV	0.9935	0.9831	0.1151	108.33	0.5436	5.58	1/982	1/7748
SNV	Breast	SARDH_G92R_5	HLA-C12:03	LGMSRAVLL	0.9913	0.9694	1.295	130.99	0.5943	2.38	1/982	1/7748
SNV	Breast	CDH2_R650T_7	HLA-B35:01	SPVTIKTNW	0.9636	0.8421	0.3846	307.62	0.4278	1.14	1/982	1/7748
SNV	Breast	CDK2_V230F_6	HLA-B35:01	VVWPGFTSM	0.9709	0.9223	0.1595	114.96	0.3217	30.98	1/982	1/7748
SNV	Breast	CDK2_V230F_10	HLA-B35:01	TPDEVVWPGF	0.9817	0.91	0.4908	278.17	0.4151	30.98	1/982	1/7748
SNV	Breast	CDYL_D483N_3	HLA-B35:01	SPNGCSTVM	0.9857	0.7373	0.0706	5.59	0.0952	19.64	1/982	1/7748
SNV	Breast	CDYL_D483N_3	HLA-B35:01	SPNGCSTVMF	0.9754	0.6918	0.2547	202.51	0.3797	19.64	1/982	1/7748
SNV	Breast	EXT1_K261E_8	HLA-B35:01	NTIPPLREY	0.9916	0.79	0.4208	9.63	0.1253	17.03	1/982	1/7748
SNV	Breast	GRK4_I481M_4	HLA-A02:01	VLDMEQFSV	0.9985	0.6735	0.1777	2.44	0.0545	4.96	1/982	1/7748
SNV	Breast	IFI16_P433T_3	HLA-B35:01	MPTTTPSSSF	0.9988	0.9081	0.1208	26.99	0.196	23.67	1/982	1/7748
SNV	Breast	IGHV3-53_E107K_3	HLA-B35:01	RAKDTAVYY	0.9018	0.7653	0.2133	21.25	0.1801	2.61	1/982	1/7748
SNV	Breast	KIF11_V600F_9	HLA-B35:01	IPENVSTHF	0.9978	0.8925	0.0706	2.24	0.0429	24.48	1/982	1/7748
SNV	Breast	KRIT1_R426K_1	HLA-A02:01	KMDGSYRSV	0.9872	0.5038	0.3516	236.8	0.5343	28.95	1/982	1/7748
SNV	Breast	LARS_G315E_8	HLA-B35:01	RPDMKYIEF	0.9833	0.9378	0.4467	6.37	0.101	77.17	1/982	1/7748
SNV	Breast	LARS_G315E_8	HLA-C04:01	RPDMKYIEF	0.9949	0.7332	0.3516	399.73	0.1383	77.17	1/982	1/7748
SNV	Breast	LYN_K209N_9	HLA-B35:01	FPCISDMINHY	0.9993	0.7909	0.2574	15.87	0.1621	14.27	1/982	1/7748
SNV	Breast	MCRS1_R297G_6	HLA-A02:01	KLKDMGDEV	0.9696	0.6171	0.5996	108.48	0.4026	52.95	1/982	1/7748
SNV	Breast	MYH10_S1722F_10	HLA-B35:01	LADEITNSAF	0.9861	0.8994	0.4169	151.81	0.3502	77.89	1/982	1/7748
SNV	Breast	MYH11_I1366M_2	HLA-A02:01	HMSTLNIQL	0.9848	0.5523	0.2976	45.76	0.2932	6.54	1/982	1/7748
SNV	Breast	PA2G4_R243K_5	HLA-B35:01	DAGQKTTIY	0.8741	0.7603	0.2421	47.65	0.2407	150.65	1/982	1/7748
SNV	Breast	PHKB_V810L_8	HLA-A02:01	FLVHGKQLTL	0.9686	0.5023	0.2256	223.24	0.5247	58.78	1/982	1/7748
SNV	Breast	RASA1_S122L_8	HLA-A02:01	ALTKLPTLL	0.9438	0.596	0.5138	71.7	0.3487	39.69	1/982	2/7748
SNV	Breast	SIPA1L2_M1539I_6	HLA-B35:01	HPAPSIGSL	0.9955	0.6286	0.0984	3.69	0.072	17.05	1/982	1/7748
SNV	Breast	SLC25A13_R191H_6	HLA-A02:01	IMVTIHPHV	0.995	0.5211	0.0288	17.43	0.2057	25.74	1/982	2/7748
SNV	Breast	TBCC_S80L_3	HLA-B50:01	AELVERLEEA	0.9635	0.8254	0.1445	480.47	0.3335	75.54	1/982	1/7748
SNV	Breast	TBL3_D73G_1	HLA-A02:01	GLSPDNEVL	0.9029	0.5984	0.9515	152.15	0.4605	33.26	1/982	1/7748
SNV	Breast	TBL3_D73G_1	HLA-A02:01	GLSPDNEVLV	0.9903	0.5585	0.7225	36.83	0.272	33.26	1/982	1/7748
SNV	Breast	ALDH16A1_V111A_5	HLA-A03:01	RLAEAIQK	0.9994	0.5248	1.1235	219.8	0.3753	24.29	1/982	1/7748
SNV	Breast	SRCAP_H395Y_1	HLA-B35:01	YPDEDDEEF	0.996	0.9578	0.2595	2.08	0.0389	54.46	1/982	1/7748
SNV	Breast	ANPEP_R363Q_3	HLA-C14:02	TYQENSLLF	0.5915	0.9442	0.0059	2.53	0.0342	31.69	1/982	1/7748
SNV	Breast	FAM20C_D532H_3	HLA-C14:02	RGHQVAPVL	0.6673	0.977	1.231	367.34	0.942	60.55	1/982	1/7748
SNV	Breast	ROBO1_G470A_5	HLA-B51:01	VAVDATFVL	0.9498	0.5628	0.0998	339.97	0.3815	7.2	1/982	1/7748
SNV	Breast	ROBO1_G470A_5	HLA-C14:02	VAVDATFVL	0.9893	0.979	0.8205	147.39	0.6019	7.2	1/982	1/7748
SNV	Breast	BCAT2_V206M_8	HLA-C07:02	AYFPGGSM	0.9094	0.986	0.8844	202.88	0.2716	29.1	1/982	1/7748
SNV	Breast	CDK12_V1094L_10	HLA-B07:02	APPQPAPGKL	0.9863	0.6854	0.1096	25.18	0.1677	27.86	1/982	1/7748
SNV	Breast	CSRNP2_L454P_4	HLA-C07:02	VFSPPVTSL	0.8805	0.9698	0.0301	6.64	0.0313	79.8	1/982	1/7748
SNV	Breast	DRD4_V410I_4	HLA-C07:02	FRNIFRKAL	0.9241	0.92	0.0496	9.89	0.0484	1.12	1/982	1/7748
SNV	Breast	MFSD6L_P141R_2	HLA-C07:02	HRAKRTAEV	0.8094	0.9187	0.3336	370.12	0.353	30.95	1/982	1/7748
SNV	Breast	APPL1_G76R_4	HLA-B35:01	FPLRGDDEV	0.9176	0.939	0.3504	422.52	0.4678	21.41	1/982	1/7748
SNV	Breast	APPL1_G76R_4	HLA-B35:01	FPLRGDDEVM	0.9939	0.9534	0.3912	34.05	0.2137	21.41	1/982	1/7748
SNV	Breast	ASIC3_R63T_6	HLA-B35:01	YQVAETVRY	0.8962	0.9253	0.6081	345.75	0.4425	1.28	1/982	1/7748
SNV	Breast	ASIC3_R63T_5	HLA-B35:01	QVAETVRYY	0.9866	0.9148	0.4305	15.53	0.1608	1.28	1/982	1/7748
SNV	Breast	ATP2B1_H496N_8	HLA-B35:01	QAYINEKNY	0.9786	0.8313	0.32	94.11	0.3012	24.41	1/982	1/7748
SNV	Breast	BICD1_L106V_3	HLA-C07:02	YYVGKILEM	0.7206	0.9424	0.0037	1.76	0.0048	1.68	1/982	1/7748
SNV	Breast	BICD1_L106V_4	HLA-C07:02	AYYVGKILEM	0.948	0.9491	0.6168	272.12	0.3077	1.68	1/982	1/7748
SNV	Breast	BRIP1_E421Q_5	HLA-B35:01	FARDQLDSM	0.961	0.8934	0.1454	12.57	0.1473	3.87	1/982	1/7748
SNV	Breast	BRPF3_D174H_5	HLA-C07:02	KRRVHGHSL	0.8512	0.9718	0.07	83.13	0.1762	27.86	1/982	1/7748
SNV	Breast	BTK_M228I_3	HLA-B35:01	MPINANDLQL	0.9942	0.9313	0.27	141.56	0.343	4.89	1/982	1/7748
SNV	Breast	CD300LF_V41I_1	HLA-C07:02	IYRSGWETY	0.53	0.9327	0.3008	192.43	0.2654	4.85	1/982	1/7748
SNV	Breast	CFAP44_S749Y_9	HLA-B35:01	EIFIPSTPY	0.9682	0.8537	0.2389	32.79	0.2107	2.92	1/982	1/7748
SNV	Breast	CFAP44_S749Y_6	HLA-B35:01	IPSTPYPIL	0.985	0.9062	0.1835	204.44	0.3807	2.92	1/982	1/7748
SNV	Breast	CFAP44_S749Y_3	HLA-B35:01	TPYPILCGF	0.9869	0.6117	0.035	7.62	0.1115	2.92	1/982	1/7748
SNV	Breast	CFAP44_S749Y_3	HLA-B35:01	TPYPILCGFY	0.9898	0.5247	0.1695	457.68	0.4779	2.92	1/982	1/7748
SNV	Breast	CSF1_S277L_1	HLA-B07:02	LPQPRPSVGAF	0.9997	0.5807	0.193	212.56	0.3266	23.11	1/982	1/7748
SNV	Breast	EFHC2_D142N_5	HLA-B35:01	LPPPNEDQF	0.981	0.839	0.277	45.84	0.2376	2.81	1/982	1/7748
SNV	Breast	EFHC2_D142N_5	HLA-B35:01	LPPPNEDQFY	0.973	0.8428	0.2255	375.23	0.4528	2.81	1/982	1/7748
SNV	Breast	ENC1_L297I_9	HLA-B07:02	RPRKTGHAIF	0.9997	0.5888	0.0996	1.62	0.0242	37.42	1/982	1/7748
SNV	Breast	ENC1_L297I_9	HLA-B07:02	RPRKTGHAIFL	0.9999	0.6526	0.2404	2.04	0.0336	37.42	1/982	1/7748
SNV	Breast	ENC1_L297I_1	HLA-C07:02	IFLLGGQTF	0.5529	0.9428	0.2011	76.59	0.1693	37.42	1/982	1/7748
SNV	Breast	ETV6_P20S_3	HLA-B35:01	TPSESPVPSY	0.9864	0.911	0.1268	2.48	0.0482	27.79	1/982	1/7748
SNV	Breast	FAM91A1_P561S_3	HLA-B35:01	KLSDIFQSY	0.9361	0.7397	0.3005	452.6	0.4765	39.42	1/982	1/7748
SNV	Breast	FAT1_D2373N_7	HLA-B35:01	MPTLSSNVI	0.9843	0.8046	0.27	124.29	0.3297	16.25	1/982	1/7748
SNV	Breast	FNBP4_P465A_4	HLA-A11:01	ATSAESTSR	0.993	0.5134	0.2486	50.95	0.2261	14.49	1/982	1/7748
SNV	Breast	HEG1_S437F_9	HLA-B35:01	EVQNGSPMF	0.8846	0.6811	1.3121	321.71	0.4334	33.9	1/982	1/7748
SNV	Breast	HEG1_S437F_4	HLA-B07:02	SPMFQTETV	0.9856	0.5058	0.0554	17.65	0.1486	33.9	1/982	1/7748
SNV	Breast	HMCN1_R2306Q_9	HLA-B35:01	HPTEIIVTQ	0.8709	0.9252	0.2574	96.33	0.3036	10.31	1/982	1/7748
SNV	Breast	KDM5C_E981K_1	HLA-C07:02	KRWEEKAHL	0.9569	0.9657	0.0548	160.98	0.2449	48.93	1/982	1/7748
SNV	Breast	KIAA1841_Q32E_8	HLA-B35:01	YPLIGIPET	0.9411	0.9467	0.4404	275.21	0.4137	3.25	1/982	1/7748
SNV	Breast	LETM1_R382Q_4	HLA-C07:02	CRAQGMRAL	0.7926	0.931	0.3008	462.07	0.3858	26.95	1/982	1/7748
SNV	Breast	LRP2_D2245H_7	HLA-B35:01	LAVDRSHGY	0.9925	0.8322	0.038	2.81	0.0545	4.16	1/982	1/7748
SNV	Breast	MKS1_H333N_8	HLA-C07:02	EYDNLYVNF	0.8272	0.8945	0.2519	432.7	0.3761	11.34	1/982	1/7748
SNV	Breast	MKS1_H333N_4	HLA-C07:02	LYVNFFVEL	0.6419	0.923	0.2011	348.73	0.3443	11.34	1/982	1/7748
SNV	Breast	MKS1_H333N_8	HLA-C04:01	EYDNLYVNF	0.9714	0.721	0.1496	25.16	0.04	11.34	1/982	1/7748
SNV	Breast	NVL_A456T_6	HLA-C07:02	LRLPQTFDF	0.8822	0.9027	0.052	43.87	0.1221	37.64	1/982	1/7748
SNV	Breast	ORC1_N442D_4	HLA-B07:02	VSRDLRSSL	0.9706	0.7045	0.2056	221.75	0.3303	25.14	1/982	1/7748
SNV	Breast	PRDM10_S367L_6	HLA-C07:02	RRFISLEQL	0.8926	0.9733	0.0399	42.36	0.1198	5.63	1/982	1/7748
SNV	Breast	R3HDM2_D884N_6	HLA-C07:02	TRTEANKLF	0.7931	0.8365	0.1834	237.8	0.2903	21.09	1/982	1/7748
SNV	Breast	RAB11FIP1_R789W_9	HLA-B35:01	VPSIDSMMW	0.9803	0.8571	0.5189	97.57	0.3049	29.75	1/982	1/7748
SNV	Breast	RNF213_D5058Y_3	HLA-C07:02	MGYQTIHVL	0.9027	0.8159	1.073	473.2	0.3893	27.72	1/982	1/7748
SNV	Breast	SCAPER_P217A_8	HLA-B07:02	VPAPRLAAT	0.9976	0.6337	0.1179	72.68	0.2375	1.47	1/982	1/7748
SNV	Breast	SCAPER_P217A_6	HLA-B07:02	APRLAATGV	0.9993	0.5544	0.0118	1.83	0.0291	1.47	1/982	1/7748
SNV	Breast	SLC13A3_S377Y_9	HLA-B35:01	SLFNPGFLY	0.9463	0.9337	0.6128	458.44	0.4781	2.79	1/982	1/7748
SNV	Breast	SLC13A3_S377Y_3	HLA-C04:01	FLYDAVTGV	0.9142	0.9021	0.9599	410.27	0.1402	2.79	1/982	1/7748
SNV	Breast	SLC13A3_S377Y_2	HLA-C04:01	LYDAVTGVAI	0.9996	0.8691	0.0882	433.7	0.1443	2.79	1/982	1/7748
SNV	Breast	SMG8_E943K_6	HLA-B35:01	YPEKQKITL	0.9932	0.7623	0.2825	3.12	0.0596	33	1/982	1/7748
SNV	Breast	SNRNP200_E706K_8	HLA-C07:02	KRFQIMNKI	0.9248	0.9581	0.1285	42.74	0.1204	100.58	1/982	1/7748
SNV	Breast	SNX17_A276V_4	HLA-C04:01	RFDVCVADF	0.9602	0.7332	0.0455	165.35	0.0891	92.01	1/982	1/7748
SNV	Breast	VWA8_L816F_9	HLA-C07:02	HRDTTVQTF	0.815	0.8974	0.0077	6.49	0.0305	13.15	1/982	1/7748
SNV	Breast	WBP11_Q120E_4	HLA-C07:02	KRAELSQYF	0.946	0.9067	0.024	8.64	0.0407	76.26	1/982	1/7748
SNV	Breast	ZZZ3_R787S_4	HLA-B35:01	IMYSNLPEY	0.9721	0.9029	0.2595	83.4	0.2901	11.06	1/982	2/7748
SNV	Breast	ZZZ3_R787S_6	HLA-B35:01	IPIMYSNLPEY	0.999	0.8068	0.478	78.25	0.2844	11.06	1/982	2/7748
SNV	Breast	ABCA3_E1015Q_5	HLA-B15:16	RASVQGGGF	0.9078	0.9708	0.2617	85.52	0.4614	9.55	1/982	1/7748
SNV	Breast	ARSK_P533A_6	HLA-B15:16	KTHMNARAV	0.8146	0.744	0.7202	304.91	0.8395	1.08	3/982	3/7748
SNV	Breast	ARSK_P533A_6	HLA-B15:16	KTHMNARAV	0.8146	0.744	0.7202	304.91	0.8395	1.08	3/982	3/7748
SNV	Breast	ARSK_P533A_6	HLA-B15:16	KTHMNARAV	0.8146	0.744	0.7202	304.91	0.8395	1.08	3/982	3/7748
SNV	Breast	BIRC6_S3504N_8	HLA-B15:16	VAAILWHNY	0.9703	0.9003	0.25	289.68	0.8192	15.97	1/982	1/7748
SNV	Breast	C16orf62_T951R_5	HLA-C14:02	MTHLRELAL	0.9691	0.9387	0.4206	477.05	1.0582	13.21	1/982	1/7748
SNV	Breast	C5orf42_A2270S_6	HLA-A33:03	DSFQPSLPQR	0.8865	0.7635	0.6308	424.42	0.2327	5.72	1/982	1/7748
SNV	Breast	C5orf42_A2270S_8	HLA-B15:16	LSDSFQPSL	0.7183	0.8175	0.7093	297.57	0.8298	5.72	1/982	1/7748
SNV	Breast	CRYL1_I235L_4	HLA-B15:16	YAFLGPLETM	0.9821	0.9162	0.9356	137.38	0.5759	15.34	1/982	1/7748
SNV	Breast	CRYL1_I235L_4	HLA-C14:02	YAFLGPLETM	0.9608	0.9715	0.9635	158.59	0.623	15.34	1/982	1/7748
SNV	Breast	CSPG5_D375N_5	HLA-B15:16	RSVCNLFPSY	0.9763	0.6116	0.56	447.64	1.0029	1.69	1/982	1/7748
SNV	Breast	FBXW7_R479Q_3	HLA-B15:16	GSQDATLRVW	0.9976	0.9693	0.5376	133.2	0.5689	4.81	1/982	1/7748
SNV	Breast	HECTD4_C3895S_3	HLA-C04:01	YFSQAARQL	0.5878	0.7935	0.071	82.77	0.0694	2.43	1/982	1/7748
SNV	Breast	HECTD4_C3895S_3	HLA-C14:02	YFSQAARQL	0.6279	0.9498	0.031	2.05	0.0226	2.43	1/982	1/7748
SNV	Breast	HECTD4_C3895S_4	HLA-C14:02	SYFSQAARQL	0.8535	0.9393	0.2343	36.99	0.3024	2.43	1/982	1/7748
SNV	Breast	PLEKHG4B_S1216F_9	HLA-B15:16	GSLGLLVSF	0.9963	0.8194	0.0938	34.71	0.2626	17.81	1/982	1/7748
SNV	Breast	PLEKHG4B_S1216F_1	HLA-B15:16	FSPAHPGLW	0.9819	0.949	0.0546	33.51	0.2564	17.81	1/982	1/7748
SNV	Breast	PLEKHG4B_S1216F_3	HLA-B15:16	VSFSPAHPGL	0.9838	0.7519	1.1579	147.52	0.5921	17.81	1/982	1/7748
SNV	Breast	PLEKHG4B_S1216F_3	HLA-B15:16	VSFSPAHPGLW	0.9995	0.8999	0.2617	68.33	0.3999	17.81	1/982	1/7748
SNV	Breast	SRGAP2_D737E_7	HLA-A68:02	EAIAKFEYV	0.9997	0.5328	0.0681	3.88	0.0217	12.25	1/982	1/7748
SNV	Breast	ZNF33B_K509R_1	HLA-B15:16	RSVLTRHQI	0.987	0.6766	0.2939	22.93	0.1884	12.84	1/982	1/7748
SNV	Breast	ZNF33B_K509R_5	HLA-C14:02	TFYHRSVL	0.8399	0.9463	0.4886	241.67	0.7679	12.84	1/982	1/7748
SNV	Breast	ZNF33B_K509R_6	HLA-C14:02	KTFYHRSVL	0.5127	0.9413	0.8754	315.1	0.8789	12.84	1/982	1/7748
SNV	Breast	ZNF721_T736S_4	HLA-B15:16	KIHSGDKLY	0.8726	0.5648	0.5453	251.57	0.7704	7.93	1/982	1/7748
SNV	Breast	ZNF761_K669M_1	HLA-B15:16	MTFSRKSYF	0.9906	0.501	0.0304	4.27	0.0276	8.73	1/982	1/7748
SNV	Breast	ZNF844_P265T_6	HLA-B15:16	KAFGSTNSL	0.9938	0.9402	0.0628	8.59	0.0788	4.01	1/982	1/7748
SNV	Breast	ZNF844_P265T_6	HLA-B15:16	KAFGSTNSLY	0.9877	0.8143	0.1249	9.25	0.0875	4.01	1/982	1/7748
SNV	Breast	ZNF844_P265T_6	HLA-C14:02	KAFGSTNSL	0.599	0.9757	0.0956	14.2	0.1735	4.01	1/982	1/7748
SNV	Breast	HDLBP_R146G_8	HLA-B27:07	ARKDIVAGL	0.9988	0.7691	0.0456	1.24	0.0224	265.79	1/982	1/7748
SNV	Breast	HELZ_R295H_5	HLA-A32:01	RMLYHVALL	0.9712	0.9542	0.0372	38.33	0.092	5.59	1/982	1/7748
SNV	Breast	HELZ_R295H_4	HLA-A32:01	MLYHVALLY	0.8255	0.9067	0.0454	129.87	0.1649	5.59	1/982	1/7748
SNV	Breast	ITIH5_I808V_7	HLA-C15:02	GSIAFVVLI	0.9989	0.8337	0.393	337.75	0.6571	4.93	1/982	1/7748
SNV	Breast	KIAA1462_D427A_2	HLA-C04:01	FADPRLRHF	0.9996	0.8326	0.0083	37.3	0.05	9.14	1/982	1/7748
SNV	Breast	KIAA1462_D427A_2	HLA-C15:02	FADPRLRHF	0.9534	0.8942	0.0215	39.49	0.2361	9.14	1/982	1/7748
SNV	Breast	KIZ_S626L_9	HLA-C15:02	SSSEGSPLL	0.9983	0.8911	0.0489	33.95	0.2107	8.19	1/982	1/7748
SNV	Breast	MECR_Q111H_1	HLA-C15:02	HVVAVGSNV	0.9983	0.9366	1.1964	397.66	0.7092	12.32	1/982	1/7748
SNV	Breast	NUDC_E98D_3	HLA-C15:02	KSDTSGPQI	0.9693	0.7263	0.2144	47.78	0.2663	212.62	1/982	1/7748
SNV	Breast	PIK3CA_E542K_8	HLA-C15:02	STRDPLSKI	0.996	0.6932	0.1871	19.94	0.1456	3.3	3/982	4/7748
SNV	Breast	SMIM19_D100N_3	HLA-C15:02	QANSVQLSL	0.9986	0.8448	0.1775	28.64	0.1866	66.71	1/982	1/7748
SNV	Breast	TARBP2_A127T_2	HLA-C15:02	TTAAAATPV	0.9974	0.9513	0.785	493.5	0.77	9.15	1/982	1/7748
SNV	Breast	TGFBI_E611K_1	HLA-B35:03	KPVAEPDIM	0.9219	0.7762	0.1669	249.09	0.1428	28.41	1/982	1/7748
SNV	Breast	TRIM13_D18E_4	HLA-C15:02	SLFEDPRVL	0.8799	0.8856	0.3236	273.21	0.5914	12.13	1/982	1/7748
SNV	Breast	UNC13B_T25I_3	HLA-C15:02	YVILKVQNV	0.999	0.746	0.6275	76.89	0.3462	20.37	1/982	1/7748
SNV	Breast	ARHGAP5_H551R_2	HLA-C07:02	YRPTKETCL	0.8052	0.9439	0.2626	153.31	0.2396	14.88	1/982	1/7748
SNV	Breast	FHOD3_Y485C_5	HLA-C07:02	FRYKCLEQL	0.8316	0.9636	0.0026	53.27	0.1385	15.75	1/982	1/7748
SNV	Breast	KLHDC4_P73S_1	HLA-B44:03	SEKDELILF	0.9979	0.9577	0.0229	1.85	0.0343	30.38	1/982	1/7748
SNV	Breast	KMT2B_D2640Y_10	HLA-C07:02	FRMDDFDVVY	0.9893	0.9264	0.1449	83.74	0.1769	29.97	1/982	1/7748
SNV	Breast	NELFCD_T146N_1	HLA-B44:03	NEEGETPAW	0.9973	0.9713	0.0655	4.47	0.0822	152.82	1/982	1/7748
SNV	Breast	NUMA1_Q1318E_2	HLA-B44:03	SEAERAEEL	0.9961	0.9712	0.2143	44.36	0.2162	61.33	1/982	1/7748
SNV	Breast	PTBP2_L257V_8	HLA-C07:02	LRIDFSKVV	0.8454	0.9202	0.418	202.79	0.2715	10.18	1/982	1/7748
SNV	Breast	SLC25A38_G256D_4	HLA-C07:02	QWIDQAVTL	0.5735	0.9876	0.2626	85.41	0.1789	34.35	1/982	1/7748
SNV	Breast	SUSD2_C366Y_9	HLA-C07:02	LRYGSGQQY	0.8521	0.9407	0.021	20.64	0.078	31.85	1/982	1/7748
SNV	Breast	TBCD_A380V_7	HLA-A11:01	TVVRWSVAK	0.9983	0.5348	0.0238	5.99	0.0684	40.32	1/982	1/7748
SNV	Breast	CEP350_V1932L_3	HLA-B35:03	SPLPLYSHL	0.9863	0.6658	0.0377	118.35	0.1094	44.62	1/982	1/7748
SNV	Breast	POLI_Y714D_3	HLA-C04:01	VFDELPEAV	0.9995	0.9515	0.0015	3.1	0.0081	21.66	1/982	1/7748
SNV	Breast	AVPR1A_K291E_4	HLA-C02:02	RTVEMTFVI	0.7245	0.9618	0.6631	251.17	0.3043	5.35	1/982	1/7748
SNV	Breast	IQCH_L942S_10	HLA-B18:01	EERQGTVFISY	0.98	0.6199	0.5076	164.7	0.1875	3.22	1/982	1/7748
SNV	Breast	KIF3C_G174D_7	HLA-B18:01	KENPETDVY	0.9193	0.9541	0.143	220.83	0.2051	23.28	1/982	1/7748
SNV	Breast	MED23_V533F_3	HLA-C02:02	LTFHAKMSL	0.892	0.9857	0.0793	363.25	0.3845	15.3	1/982	1/7748
SNV	Breast	N4BP2L2_H303Y_9	HLA-B18:01	VEKHIRNRY	0.9825	0.884	0.0774	101.04	0.1528	11.26	1/982	1/7748
SNV	Breast	PABPC5_A41D_4	HLA-C02:02	FRPDGPLRF	0.6764	0.986	1.7096	295.53	0.3396	1.31	1/982	1/7748
SNV	Breast	VWA9_Q501H_5	HLA-C02:02	AAYDHNITPL	0.9936	0.9852	0.1083	377.75	0.393	35.97	1/982	1/7748
SNV	Breast	ZNF318_P1645A_4	HLA-B18:01	SEKAIAKTL	0.7718	0.9259	0.1746	265.45	0.2177	14.12	1/982	1/7748
SNV	Breast	PIK3CA_H1047L_2	HLA-A03:01	ALHGGWTTK	0.9988	0.5947	0.0127	2.89	0.0245	9.79	3/982	7/7748
SNV	Breast	AASS_T263M_7	HLA-C07:01	LRKVYGMVL	0.9677	0.8765	0.1053	189.96	0.1139	5.83	1/982	1/7748
SNV	Breast	ANKZF1_R641H_1	HLA-B18:01	HEREEQRRF	0.9837	0.9607	0.1196	53.05	0.1213	9.47	1/982	1/7748
SNV	Breast	FAM208A_Y303N_1	HLA-B41:01	NEYGFDEL	0.9145	0.8582	0.9141	468.05	0.4178	26.52	1/982	1/7748
SNV	Breast	PHEX_G562R_2	HLA-C07:01	WRTEYPRSL	0.9975	0.8256	0.0456	8.11	0.0143	1.71	1/982	1/7748
SNV	Breast	ALCAM_E280G_6	HLA-B35:01	NPPPEGFLF	0.9865	0.9253	0.1984	11.27	0.1383	119.19	1/982	1/7748
SNV	Breast	ALCAM_E280G_6	HLA-B35:01	NPPPEGFLFY	0.9669	0.8956	0.205	70.71	0.2752	119.19	1/982	1/7748
SNV	Breast	DCAF7_E246K_6	HLA-A02:01	AMDGMKVVI	0.8954	0.6281	0.797	357.25	0.6013	75.66	1/982	1/7748
SNV	Breast	DCAF7_E246K_7	HLA-C02:02	MAMDGMKVV	0.9113	0.9837	0.1174	93.18	0.1498	75.66	1/982	1/7748
SNV	Breast	MBTPS1_E700G_6	HLA-B35:01	MVDSEGEYF	0.8955	0.9373	0.4169	49.75	0.2442	60.11	1/982	1/7748
SNV	Breast	MBTPS1_E700G_6	HLA-C04:01	MVDSEGEYF	0.9982	0.7026	0.0696	235.5	0.1088	60.11	1/982	1/7748
SNV	Breast	NME6_E171D_3	HLA-B35:01	SPDGGVHY	0.9836	0.7321	0.7256	32.32	0.2096	10.23	1/982	1/7748
SNV	Breast	NME6_E171D_4	HLA-B35:01	YSPDGGVHY	0.8799	0.7288	0.1506	49.51	0.2438	10.23	1/982	1/7748
SNV	Breast	NME6_E171D_3	HLA-B35:01	SPDGGVHYV	0.7389	0.7472	0.581	197.21	0.377	10.23	1/982	1/7748
SNV	Breast	TMEM108_G48E_8	HLA-B35:01	LPSGTPPETM	0.9921	0.9145	0.1984	79.35	0.2856	1.6	1/982	1/7748
SNV	Breast	TRAK1_R131H_4	HLA-B35:01	LAAHIGQSL	0.9428	0.9068	0.1454	252.72	0.403	16.05	1/982	1/7748
SNV	Breast	TRAK1_R131H_4	HLA-C02:02	LAAHIGQSL	0.9607	0.9831	0.0313	171.54	0.2412	16.05	1/982	1/7748
SNV	Breast	TRIM2_G265R_2	HLA-B27:05	HRTETEVLL	0.9993	0.6633	0.252	7.38	0.1697	11.01	1/982	1/7748
SNV	Breast	USO1_P471L_5	HLA-C02:02	IGNPLVSLL	0.8098	0.9709	0.774	408.44	0.4132	68.1	1/982	1/7748
SNV	Breast	ABL2_R977G_4	HLA-B07:02	RPRGVKPKC	0.9921	0.7211	0.1256	202.34	0.3223	9.53	1/982	1/7748
SNV	Breast	C14orf93_I328M_9	HLA-C07:01	KRFNGSESM	0.9982	0.7405	0.0063	36.27	0.0539	8.6	1/982	1/7748
SNV	Breast	CCDC90B_R163T_4	HLA-C07:01	SRITADNKL	0.9906	0.6671	0.1285	266.67	0.1283	31.18	1/982	1/7748
SNV	Breast	CCDC90B_R163T_2	HLA-C15:05	ITADNKLDI	0.9787	0.816	0.4286	227.71	0.3865	31.18	1/982	1/7748
SNV	Breast	COL12A1_D2046N_1	HLA-B35:01	NHADGPVQQY	0.876	0.7429	1.3121	259.92	0.4065	36.59	1/982	1/7748
SNV	Breast	CSNK2A3_R316T_6	HLA-C07:01	SRLTATEAM	0.9978	0.6234	0.0177	193.57	0.1146	1.01	1/982	1/7748
SNV	Breast	DHRS9_L61V_1	HLA-C15:05	VTESGSTAL	0.965	0.9155	0.1467	96.66	0.2582	3.08	1/982	1/7748
SNV	Breast	DYRK1A_D73H_8	HLA-C15:05	LTNQVMPHI	0.9991	0.8011	0.4108	115.66	0.2815	40.24	1/982	1/7748
SNV	Breast	DYRK1A_D73H_5	HLA-C15:05	QVMPHIVML	0.9993	0.971	0.3162	8.22	0.0444	40.24	1/982	1/7748
SNV	Breast	FNDC1_S272L_4	HLA-C15:05	RVMLSQSVL	0.9953	0.9638	1.6467	176.97	0.3457	4.9	1/982	1/7748
SNV	Breast	GGT7_R367K_4	HLA-C15:05	GVYKGHLVL	0.997	0.9491	1.1674	40.93	0.1563	4.78	1/982	1/7748
SNV	Breast	HMGXB3_I979M_9	HLA-B35:01	NVSEETVTM	0.914	0.9094	0.291	22.62	0.1842	24.38	1/982	1/7748
SNV	Breast	ICE1_S633P_6	HLA-C15:05	TSFSSPSTL	0.9992	0.9134	0.0377	55.37	0.1904	17.29	1/982	1/7748
SNV	Breast	IGHV3-38_E106K_3	HLA-B35:01	RAKGTAVYY	0.9172	0.8039	0.3663	122.52	0.3282	1.99	1/982	1/7748
SNV	Breast	IGHV3-38_E106K_4	HLA-C07:01	LRAKGTAVY	0.9953	0.6428	0.1285	149.7	0.1051	1.99	1/982	1/7748
SNV	Breast	INTS6_T687A_4	HLA-B07:02	APTAQAQPDL	0.93	0.6508	0.221	208.57	0.3249	5.46	1/982	1/7748
SNV	Breast	LPIN2_E876Q_5	HLA-B35:01	FPCPQFSSF	0.999	0.7079	0.0019	1.94	0.0356	24.03	1/982	1/7748
SNV	Breast	MRPS22_G270R_6	HLA-C07:01	TRYFGRMVW	0.9888	0.8391	0.452	53.68	0.0679	13.13	1/982	1/7748
SNV	Breast	NBAS_Q2038H_3	HLA-C15:05	IVHSAIMKI	0.9926	0.7979	0.3204	26.05	0.1124	16.68	1/982	1/7748
SNV	Breast	PPP3CA_E363Q_8	HLA-C15:05	FVGEKVTQM	0.9952	0.9339	0.0762	42.7	0.1604	26.96	1/982	1/7748
SNV	Breast	PRR12_R977M_9	HLA-C15:05	KAEPPPKKM	0.9817	0.8975	0.0329	100.65	0.2635	31.83	1/982	1/7748
SNV	Breast	PSMC5_G185A_6	HLA-C15:05	IAQPKAVLL	0.9995	0.9053	0.015	6.53	0.0336	123.04	1/982	1/7748
SNV	Breast	QRICH1_E605Q_7	HLA-B35:01	LPSHVTQEM	0.9981	0.8033	0.017	1.32	0.0179	37.22	1/982	1/7748
SNV	Breast	RANBP2_Q807H_5	HLA-C15:05	WAEDHNSLL	0.9799	0.9152	0.0998	124.85	0.2914	27.72	1/982	1/7748
SNV	Breast	RASSF4_Q272E_7	HLA-B35:01	VPHEVAEY	0.9968	0.9578	0.218	8.05	0.1147	18.81	1/982	1/7748
SNV	Breast	RASSF4_Q272E_8	HLA-B35:01	EVPHEVAEY	0.9137	0.832	0.739	223.02	0.3896	18.81	1/982	1/7748
SNV	Breast	RBM33_Q1113L_5	HLA-C15:05	TTDALLKSL	0.9884	0.631	0.0186	73.03	0.2245	10.79	1/982	1/7748
SNV	Breast	RSPH4A_P469A_5	HLA-B35:01	RLDAAIISY	0.8036	0.8593	0.9437	414.23	0.4653	1.23	1/982	1/7748
SNV	Breast	SEPSECS_D233N_6	HLA-B07:02	APRVPNRL	0.9996	0.6593	0.148	7.48	0.0931	4.78	1/982	1/7748
SNV	Breast	SEPSECS_D233N_6	HLA-B07:02	APRVPNRLEEL	1	0.7621	0.1404	10.27	0.1174	4.78	1/982	1/7748
SNV	Breast	SEPSECS_D233N_7	HLA-C15:05	FAPRVPNRL	0.9957	0.8721	0.0716	96.55	0.2581	4.78	1/982	1/7748
SNV	Breast	SERPINF1_L286F_9	HLA-B35:01	LPLKVTQNF	0.9967	0.9497	0.0239	1.77	0.0314	169.49	1/982	1/7748
SNV	Breast	SERPINF1_L286F_6	HLA-C15:05	KVTQNFTLI	0.991	0.6891	0.8716	239.47	0.3946	169.49	1/982	1/7748
SNV	Breast	SLC1A1_Q322E_7	HLA-B35:01	FAMGMAEAL	0.9818	0.9558	0.0736	31.69	0.208	2.65	1/982	1/7748
SNV	Breast	SLC1A1_Q322E_7	HLA-C15:05	FAMGMAEAL	0.9989	0.9648	0.0406	79.17	0.234	2.65	1/982	1/7748
SNV	Breast	SLC1A1_Q322E_3	HLA-C15:05	MAEALLTAL	0.9982	0.9716	0.0791	201.18	0.3664	2.65	1/982	1/7748
SNV	Breast	SLC4A3_A1089P_2	HLA-B35:01	IPSLVGLSI	0.9575	0.8755	0.1153	260.32	0.4067	6.91	1/982	1/7748
SNV	Breast	SLC4A3_A1089P_4	HLA-C15:05	VLIPSLVGL	0.9383	0.9306	0.7559	273.6	0.4222	6.91	1/982	1/7748
SNV	Breast	STXBP6_Q167H_3	HLA-C15:05	AVHKASQAL	0.9674	0.8779	0.2489	449.29	0.5337	49.64	1/982	1/7748
SNV	Breast	TMEM189_A58T_2	HLA-C15:05	ITHNLVHLL	0.9985	0.8965	0.0406	18.11	0.0856	19.46	1/982	1/7748
SNV	Breast	TRERF1_Q555E_4	HLA-B07:02	LPPEPQPPL	0.9956	0.6175	0.0595	28.84	0.175	24.3	1/982	1/7748
SNV	Breast	TRIM38_I29M_5	HLA-B35:01	NPVSMNCGHSY	0.9981	0.7564	0.1427	104.29	0.3117	14.65	1/982	1/7748
SNV	Breast	UBR2_Y192H_4	HLA-C07:01	ARTHNIFAI	0.9977	0.7807	0.0705	264.88	0.1278	19.38	1/982	1/7748
SNV	Breast	CCDC66_Q664H_3	HLA-C02:02	LTHDKGASL	0.8578	0.9761	0.0266	74.14	0.1348	7.31	1/982	1/7748
SNV	Breast	DIABLO_S164P_7	HLA-C02:02	MTAVGLPEM	0.8074	0.9515	0.0597	84.23	0.1432	8.69	1/982	1/7748
SNV	Breast	HVCN1_K157N_8	HLA-C02:02	FMMEIIFNL	0.7475	0.9876	0.4452	84.51	0.1434	2.06	1/982	1/7748
SNV	Breast	SLC11A1_V115M_9	HLA-B27:05	QRLAARLGM	0.9999	0.6179	0.1824	1.94	0.0599	1.86	1/982	1/7748
SNV	Breast	SLC11A1_V115M_5	HLA-B27:05	ARLGMVTGK	0.9993	0.863	0.1113	1.99	0.0619	1.86	1/982	1/7748
SNV	Breast	SLC11A1_V115M_5	HLA-B27:05	ARLGMVTGKDL	0.9999	0.6787	0.1824	25.97	0.2702	1.86	1/982	1/7748
SNV	Breast	AP1G2_C659Y_1	HLA-C16:01	YVPPPPAPI	0.8745	0.9638	0.2251	18.01	0.1595	15.78	1/982	1/7748
SNV	Breast	ARNTL2_R118W_10	HLA-B44:03	REAHSQTEKW	0.9991	0.907	0.0045	3.24	0.0656	3.73	1/982	1/7748
SNV	Breast	ARNTL2_R118W_1	HLA-C07:02	WRRDKMNNL	0.6947	0.9552	0.34	34.78	0.107	3.73	1/982	1/7748
SNV	Breast	C17orf75_N379S_1	HLA-A32:01	SVIAVLEEF	0.9895	0.9369	0.3093	31.84	0.0796	12.43	1/982	1/7748
SNV	Breast	C17orf75_N379S_8	HLA-B44:03	EEMPEAKSV	0.9625	0.9874	0.1802	8.29	0.113	12.43	1/982	1/7748
SNV	Breast	C17orf75_N379S_8	HLA-B44:03	EEMPEAKSVI	0.993	0.9879	0.428	219.32	0.3442	12.43	1/982	1/7748
SNV	Breast	C17orf75_N379S_1	HLA-C16:01	SVIAVLEEF	0.9733	0.9834	0.3356	95.35	0.4154	12.43	1/982	1/7748
SNV	Breast	GIMAP4_G183S_3	HLA-C07:02	IFSDRYCAL	0.6959	0.8355	0.3636	300.55	0.3223	65.27	1/982	1/7748
SNV	Breast	TLR7_N215S_1	HLA-C16:01	SVTAVPTVL	0.9341	0.9675	0.3639	8.84	0.0911	5.52	1/982	1/7748
SNV	Breast	CDADC1_P291L_7	HLA-C14:02	TVASSVLNF	0.6593	0.9688	1.9075	265.68	0.8089	15.52	1/982	1/7748
SNV	Breast	EFCAB13_S931L_9	HLA-C14:02	YMLKTIQDL	0.7137	0.954	0.2549	114.73	0.5377	1.3	1/982	1/7748
SNV	Breast	NRIP1_L144V_9	HLA-A02:01	LLQSFSSRV	0.992	0.6214	0.1273	419.88	0.6369	11.7	1/982	1/7748
SNV	Breast	PYCR2_V143L_3	HLA-A02:01	ALLEDGQLL	0.9908	0.5609	0.4625	2.41	0.0539	227.08	1/982	1/7748
SNV	Breast	PYCR2_V143L_9	HLA-C14:02	YATGTHALL	0.9633	0.9691	0.599	55.81	0.372	227.08	1/982	1/7748
SNV	Breast	PYCR2_V143L_10	HLA-C14:02	VYATGTHALL	0.9174	0.9712	0.6561	44.63	0.3341	227.08	1/982	1/7748
SNV	Breast	TMEM161A_E190D_5	HLA-C14:02	VVREDTLEL	0.8069	0.9543	1.1266	96.06	0.4926	30.3	1/982	1/7748
SNV	Breast	AADAC_N299S_1	HLA-B35:01	SPNYGSSEL	0.9588	0.8104	0.4229	13.04	0.1502	4.97	1/982	1/7748
SNV	Breast	ABCG1_T46M_3	HLA-B44:03	TEMDLLNGHL	0.9911	0.9027	0.1409	154.33	0.3166	18.73	1/982	1/7748
SNV	Breast	ABCG1_T46M_9	HLA-C16:01	SSNMEATEM	0.7241	0.9898	0.3132	178.36	0.552	18.73	1/982	2/7748
SNV	Breast	DOCK7_I545M_6	HLA-B35:01	RPTREMLEF	0.9642	0.9027	0.5162	20.25	0.1769	16.22	1/982	1/7748
SNV	Breast	DOCK7_I545M_8	HLA-C16:01	RVRPTREML	0.6948	0.9742	1.669	25.36	0.1926	16.22	1/982	1/7748
SNV	Breast	EIF2B3_T197M_1	HLA-B35:01	MGLVDAHLY	0.993	0.8573	0.2039	486.92	0.4857	24.88	1/982	1/7748
SNV	Breast	FANCF_A358T_2	HLA-C16:01	GTFRKRQVL	0.7211	0.9362	0.9025	144.4	0.5012	48.81	1/982	1/7748
SNV	Breast	IL10RA_R165Q_7	HLA-B35:01	SIFSHFQEY	0.9951	0.8729	0.0853	14.12	0.155	6.46	1/982	1/7748
SNV	Breast	IL10RA_R165Q_1	HLA-B44:03	QEYEIAIRKV	0.9637	0.8906	0.2736	235.88	0.3499	6.46	1/982	1/7748
SNV	Breast	IL10RA_R165Q_7	HLA-C16:01	SIFSHFQEY	0.7035	0.9668	0.0891	121.61	0.4656	6.46	1/982	1/7748
SNV	Breast	MAP3K1_S1330W_8	HLA-B44:03	IEWMAGGW	0.9968	0.9754	0.5556	326.17	0.3754	107.98	1/982	1/7748
SNV	Breast	MAP3K1_S1330W_5	HLA-C16:01	MAGGWVAHL	0.9864	0.9914	0.0431	77.32	0.3726	107.98	1/982	1/7748
SNV	Breast	MARC1_G309E_2	HLA-B44:03	YEKSPLFGQY	0.9942	0.9064	0.1455	32.16	0.1875	2.97	1/982	1/7748
SNV	Breast	MARC1_G309E_2	HLA-B44:03	YEKSPLFGQYF	0.9932	0.8837	0.4244	266.15	0.3594	2.97	1/982	1/7748
SNV	Breast	MARC1_G309E_4	HLA-C16:01	KLYEKSPLF	0.9592	0.9752	0.8925	12.01	0.1153	2.97	1/982	1/7748
SNV	Breast	MMEL1_E485K_6	HLA-B44:03	VETLDKLGW	0.9991	0.9827	0.0262	2.49	0.0498	4.03	1/982	1/7748
SNV	Breast	PDGFRB_I447V_7	HLA-B35:01	MPQPNIVW	0.9694	0.9743	1.0844	420.03	0.467	66.01	1/982	1/7748
SNV	Breast	UBR4_M790I_4	HLA-C16:01	LSTIKQNAL	0.9188	0.9774	0.4056	147.1	0.5056	19.39	1/982	1/7748
SNV	Breast	UBR4_M790I_9	HLA-C04:01	VWDRFLSTI	0.9989	0.8691	0.0251	50.77	0.0561	19.39	1/982	1/7748
SNV	Breast	VPS13C_V3571I_7	HLA-B35:01	RPTGGIIDM	0.9042	0.831	0.398	16.98	0.1661	14.29	1/982	1/7748
SNV	Breast	VPS13C_V3571I_2	HLA-B35:01	IIDMASSTF	0.9517	0.9261	0.4875	170.67	0.3622	14.29	1/982	1/7748
SNV	Breast	VPS13C_V3571I_2	HLA-C16:01	IIDMASSTF	0.9344	0.9897	0.3505	66.03	0.3405	14.29	1/982	1/7748
SNV	Breast	VPS13C_V3571I_2	HLA-C04:01	IIDMASSTF	0.9994	0.7024	0.0954	104.57	0.0751	14.29	1/982	1/7748
SNV	Breast	ZNF559_E490A_6	HLA-C16:01	RTHTGARPF	0.7133	0.9622	0.0668	27.51	0.2004	2.83	1/982	1/7748
SNV	Breast	ARHGAP35_R832Q_6	HLA-A02:01	GLHKKQIEL	0.9151	0.5405	0.7316	145.21	0.4525	59.94	1/982	1/7748
SNV	Breast	CLASP1_H909Y_1	HLA-B57:01	YSKRVFSMF	0.9973	0.9205	0.1119	329.39	0.4347	17.11	1/982	1/7748
SNV	Breast	HYLS1_D222N_8	HLA-B57:01	RYFEYKRNW	0.8014	0.9787	1.1954	264.25	0.4057	14.18	1/982	1/7748
SNV	Breast	HYLS1_D222N_3	HLA-C07:02	KRNWDSIRL	0.8269	0.8456	0.3874	151.54	0.2384	14.18	1/982	1/7748
SNV	Breast	PCDHGB5_G218E_5	HLA-A02:01	ALDGEHPPL	0.9911	0.7667	0.4392	10.9	0.1655	1.13	1/982	1/7748
SNV	Breast	RBM48_K318R_8	HLA-A02:01	PLLPDISRV	0.8291	0.8032	0.9551	432.33	0.6434	10.58	1/982	1/7748
SNV	Breast	RBM48_K318R_2	HLA-B39:01	SRVDMHDDSL	0.9974	0.7992	0.341	182.6	0.2201	10.58	1/982	1/7748
SNV	Breast	SF3B1_K700E_8	HLA-A02:01	GLVDEQQEV	0.9975	0.5095	0.4121	1.78	0.0385	129.84	4/982	4/7748
SNV	Breast	TESK2_N7S_4	HLA-A02:01	SIAGFPPRV	0.9946	0.5286	0.212	2.43	0.0542	23.69	1/982	1/7748
SNV	Breast	TESK2_N7S_9	HLA-B57:01	RSKRSSIAGF	0.9966	0.9718	0.6741	152.84	0.3265	23.69	1/982	1/7748
SNV	Breast	UBE3B_F714S_5	HLA-C07:02	IRVKSVNDL	0.7842	0.7578	0.2519	285.57	0.3148	27.66	1/982	1/7748
SNV	Breast	XDH_E601K_2	HLA-B39:01	YKNELSLRL	0.9965	0.8986	0.9133	10.37	0.0547	1.06	1/982	1/7748
SNV	Breast	XDH_E601K_2	HLA-C07:02	YKNELSLRL	0.8277	0.8854	0.6388	211.41	0.2764	1.06	1/982	1/7748
SNV	Breast	ZSCAN5A_R194S_1	HLA-B39:01	SRQGEDFLL	0.996	0.8968	0.178	21.85	0.0828	1.62	1/982	1/7748
SNV	Breast	NARS2_P240R_7	HLA-B35:01	QVFTFGRTF	0.9345	0.9669	0.1427	283.98	0.4177	42.72	1/982	1/7748
SNV	Breast	NARS2_P240R_7	HLA-B57:01	QVFTFGRTF	0.8158	0.9929	0.4158	54.43	0.2385	42.72	1/982	1/7748
SNV	Breast	NARS2_P240R_7	HLA-C07:02	QVFTFGRTF	0.5533	0.951	1.821	420.98	0.372	42.72	1/982	1/7748
SNV	Breast	PIK3CA_Q546R_4	HLA-B57:01	ITEREKDFLW	0.9998	0.9688	0.1909	8.85	0.0999	22.95	1/982	4/7748
SNV	Breast	ZNF45_K274R_7	HLA-B35:01	IVHTGERPY	0.9015	0.8189	0.1646	384.51	0.4559	20.36	1/982	1/7748
SNV	Breast	KIAA1551_V771F_5	HLA-A02:01	VLSEFKTLSV	0.9981	0.7028	0.3974	88.89	0.3764	18.37	1/982	1/7748
SNV	Breast	PRND_Q84K_8	HLA-C04:01	YYEANYWKF	0.598	0.7412	0.3734	18.12	0.0346	7.64	1/982	1/7748
SNV	Breast	ACSS3_R624K_1	HLA-B15:01	KQNIGPVAAF	0.9999	0.9479	0.1041	1.91	0.0105	2.17	1/982	1/7748
SNV	Breast	APLN_S16Y_5	HLA-A02:01	LLWLYLTAV	0.9704	0.5926	0.0449	291.87	0.5682	7.03	1/982	1/7748
SNV	Breast	ASH2L_E617K_8	HLA-A02:01	VLYHVETKV	0.9969	0.8504	0.058	4.49	0.096	30.65	1/982	1/7748
SNV	Breast	ATM_P1587T_8	HLA-B15:01	KIKYSRGTF	0.995	0.5234	0.4402	192.52	0.3664	8.04	1/982	1/7748
SNV	Breast	ATM_P1587T_5	HLA-C03:04	YSRGTFSLL	0.9969	0.9887	0.0645	65.46	0.2302	8.04	1/982	1/7748
SNV	Breast	CALD1_R19Q_1	HLA-B15:01	QLEAERIAY	0.9885	0.868	0.5955	160.51	0.3426	56.61	1/982	1/7748
SNV	Breast	CALD1_R19Q_2	HLA-B15:01	MQLEAERIAY	0.9998	0.7287	0.1255	11.92	0.1073	56.61	1/982	1/7748
SNV	Breast	CAMK1D_A333V_7	HLA-A02:01	SLDSSNVSV	0.9923	0.6456	0.2016	2.47	0.055	5.49	1/982	1/7748
SNV	Breast	CAMK1D_A333V_8	HLA-A02:01	SSLDSSNVSV	0.9659	0.6332	0.8398	399.97	0.6262	5.49	1/982	1/7748
SNV	Breast	CAMK1D_A333V_1	HLA-C03:04	VSVSSSLSL	0.9997	0.9891	0.0321	18.74	0.1328	5.49	1/982	1/7748
SNV	Breast	CC2D1B_R286Q_5	HLA-B15:01	LLSSQQREY	0.9988	0.7953	0.1821	38.08	0.1906	16.74	1/982	1/7748
SNV	Breast	CHN1_E132Q_4	HLA-C03:04	KAAQYIAKM	0.9981	0.9804	0.1061	8.22	0.0702	12.19	1/982	1/7748
SNV	Breast	DCLRE1C_E665Q_6	HLA-B08:01	ELPKRQHL	0.9995	0.5708	0.4241	100.64	0.169	5.14	1/982	1/7748
SNV	Breast	DIP2A_V577M_8	HLA-A02:01	SVMNRMHMV	0.9635	0.7027	0.2609	37.34	0.2733	15.74	1/982	1/7748
SNV	Breast	DIP2A_V577M_8	HLA-B08:01	SVMNRMHMV	0.9926	0.5646	0.3207	176.44	0.2221	15.74	1/982	1/7748
SNV	Breast	DIP2A_V577M_4	HLA-B15:01	RMHMVSVPY	0.9996	0.8386	0.0036	30.39	0.1716	15.74	1/982	1/7748
SNV	Breast	DIP2A_V577M_2	HLA-C03:04	HMVSVPYAL	0.9971	0.9608	0.2846	81.3	0.253	15.74	1/982	1/7748
SNV	Breast	EFHC2_F278L_2	HLA-B08:01	MLLRRSKL	0.9989	0.8212	0.1181	15.12	0.0542	4.34	1/982	1/7748
SNV	Breast	EFHC2_F278L_3	HLA-B08:01	KMLLRRSKL	0.9522	0.7259	0.036	145.56	0.2054	4.34	1/982	1/7748
SNV	Breast	EFHC2_F278L_8	HLA-C07:01	GRDALKMLL	0.9874	0.5313	0.1757	79.06	0.0786	4.34	1/982	1/7748
SNV	Breast	FERMT3_A296T_6	HLA-B15:01	MMVFATLQY	0.998	0.9068	0.0161	59.01	0.2358	27.86	1/982	1/7748
SNV	Breast	HTT_Q1609H_3	HLA-C07:01	SRHIADIIL	0.9928	0.6054	0.1476	275.56	0.1309	25.31	1/982	1/7748
SNV	Breast	HTT_Q1609H_1	HLA-C03:04	HIADIILPM	0.999	0.9897	0.0536	19.54	0.1362	25.31	1/982	1/7748
SNV	Breast	IARS_V238I_4	HLA-B15:01	AVCINPEMQY	0.9952	0.9237	0.9166	132.55	0.3176	81.85	1/982	1/7748
SNV	Breast	IARS_V238I_5	HLA-C03:04	LAVCINPEM	0.9996	0.9902	0.1061	493.63	0.5006	81.85	1/982	1/7748
SNV	Breast	KATNA1_D23E_7	HLA-A02:01	ALLGNYESA	0.9806	0.7241	0.5933	107.67	0.4014	32.47	1/982	1/7748
SNV	Breast	KATNA1_D23E_4	HLA-B15:01	GNYESAMVY	0.9751	0.9182	0.4875	63.41	0.2436	32.47	1/982	1/7748
SNV	Breast	KMT2A_S2869L_9	HLA-C03:04	QALGESPEL	0.9997	0.9827	0.1696	74.66	0.244	16.68	1/982	1/7748
SNV	Breast	LTBP1_H696Y_10	HLA-B15:01	RQCMHPLSVY	0.9999	0.6611	0.0781	4.35	0.0445	34.38	1/982	1/7748
SNV	Breast	NEK8_E633V_7	HLA-B15:01	AIGAESVVY	0.9896	0.9137	0.3826	22.09	0.1484	2.96	1/982	1/7748
SNV	Breast	NEK8_E633V_8	HLA-B15:01	VAIGAESVVY	0.9997	0.9149	0.501	148.12	0.3321	2.96	1/982	1/7748
SNV	Breast	NEK8_E633V_8	HLA-C03:04	VAIGAESVV	0.9924	0.9878	0.276	29.56	0.1649	2.96	1/982	1/7748
SNV	Breast	OPA3_E78K_4	HLA-C03:04	AAAKLGAEL	0.9997	0.9914	0.0351	3.79	0.0381	16.71	1/982	1/7748
SNV	Breast	PATL2_S143L_2	HLA-A02:01	TLWPPRFSHL	0.9752	0.5964	0.7451	261.24	0.5502	1.32	1/982	1/7748
SNV	Breast	PCF11_D1040H_1	HLA-C03:04	HGQPGQPSL	0.999	0.9902	0.384	364.71	0.4516	18.78	1/982	1/7748
SNV	Breast	PCF11_L238F_7	HLA-A02:01	AQLAVSFSV	0.9896	0.558	0.1073	80.01	0.3628	18.78	1/982	1/7748
SNV	Breast	PDHA1_E264K_1	HLA-B15:01	KATRFAAAY	0.9874	0.7431	0.1802	178.15	0.3562	44.77	1/982	1/7748
SNV	Breast	PLAGL2_L363V_2	HLA-A02:01	FVAELPGSL	0.975	0.5183	0.3867	107.52	0.4011	25.36	1/982	1/7748
SNV	Breast	PLAGL2_L363V_2	HLA-C03:04	FVAELPGSL	0.9994	0.9944	0.0139	2.2	0.0203	25.36	1/982	1/7748
SNV	Breast	PLAGL2_L363V_1	HLA-C03:04	VAELPGSLSL	0.9984	0.995	0.4431	184.39	0.3502	25.36	1/982	1/7748
SNV	Breast	PPP2R3A_S568L_9	HLA-C03:04	VSSPIEKVL	0.9998	0.9939	0.1919	210.34	0.3682	28	1/982	1/7748
SNV	Breast	PTPN13_G777E_6	HLA-B15:01	RLTEYEVHF	0.9969	0.9506	0.1041	35.8	0.1853	12.39	1/982	1/7748
SNV	Breast	REN_T293I_5	HLA-B15:01	ALVDIGASY	0.9996	0.8422	0.0211	1.34	0.0046	5.42	1/982	1/7748
SNV	Breast	REN_T293I_6	HLA-B15:01	LALVDIGASY	0.9993	0.7501	0.5825	12.19	0.1086	5.42	1/982	1/7748
SNV	Breast	RIC1_L962V_7	HLA-B15:01	RQHATLVF	0.9995	0.8317	0.6823	90.93	0.2777	12.85	1/982	1/7748
SNV	Breast	RIC1_L962V_4	HLA-C03:04	ATLVFNTAL	0.9973	0.9898	0.2975	216.32	0.3721	12.85	1/982	1/7748
SNV	Breast	SEC61A2_F252V_9	HLA-A02:01	NLIATVFVV	0.9902	0.6796	0.0571	20.28	0.2186	11.21	1/982	1/7748
SNV	Breast	SETX_E1856K_8	HLA-B15:01	VMRNGKTKCY	0.9992	0.8105	0.4875	57.89	0.2337	34.75	1/982	1/7748
SNV	Breast	STARD13_S42T_1	HLA-C07:01	TRILARHQL	0.9989	0.7201	0.023	28.3	0.0465	21.66	1/982	1/7748
SNV	Breast	TRAV3_S3F_9	HLA-C03:04	FAPISMLAM	0.9978	0.9918	0.0294	18.65	0.1323	1.6	1/982	1/7748
SNV	Breast	ZNF211_Q154L_2	HLA-B08:01	HLRQHITEA	0.997	0.6801	0.1126	180.04	0.2238	13.84	1/982	1/7748
SNV	Breast	ZNF555_S269L_7	HLA-B15:01	KAFSYSLTF	0.9957	0.8711	0.0248	11.62	0.1058	5.77	1/982	1/7748
SNV	Breast	ZNF555_S269L_7	HLA-C03:04	KAFSYSLTF	0.9442	0.9865	0.1165	4.76	0.0475	5.77	1/982	1/7748
SNV	Breast	GPR153_V214M_6	HLA-B27:05	RRAFTMPTI	0.9998	0.7666	0.3115	11.23	0.2046	10.03	1/982	2/7748
SNV	Breast	GPR153_V214M_6	HLA-B27:05	RRAFTMPTIV	0.9991	0.7259	0.6326	473.12	0.5941	10.03	1/982	2/7748
SNV	Breast	GPR153_V214M_5	HLA-C02:02	RAFTMPTIV	0.8227	0.9615	0.3176	291.41	0.3366	10.03	1/982	1/7748
SNV	Breast	ACACA_R2166H_1	HLA-C07:02	HRKDLVKTM	0.9103	0.893	0.0168	19.55	0.076	32.29	1/982	1/7748
SNV	Breast	ACLY_P999L_2	HLA-A02:01	FLATPLLDYA	0.9969	0.5029	0.3974	150.99	0.4592	367.07	1/982	1/7748
SNV	Breast	GCC1_T597I_7	HLA-A11:01	RALAVLIEK	0.999	0.5228	0.0711	5.09	0.0584	32.1	1/982	1/7748
SNV	Breast	GCC1_T597I_3	HLA-A02:01	VLIEKDLEL	0.998	0.8355	0.3795	1.29	0.0139	32.1	1/982	1/7748
SNV	Breast	SAMD9L_R1077L_2	HLA-A02:01	RLFPQNAFI	0.9918	0.683	0.053	3.34	0.0725	8.8	1/982	1/7748
SNV	Breast	SAMD9L_R1077L_3	HLA-C07:02	SRLFPQNAF	0.8953	0.9594	0.0638	10.96	0.0528	8.8	1/982	1/7748
SNV	Breast	TRAPPC9_I691M_6	HLA-A02:01	STVEVMPAL	0.9588	0.6235	0.3076	210.84	0.5155	32.57	1/982	1/7748
SNV	Breast	TRAPPC9_I691M_1	HLA-B35:01	MPALPRLQI	0.9761	0.9424	0.2319	332.97	0.4378	32.57	1/982	1/7748
SNV	Breast	ACLY_R848Q_5	HLA-C05:01	ICDEQGQEL	0.9999	0.9509	0.051	68.13	0.1912	204.57	1/982	1/7748
SNV	Breast	ATP9A_L714F_3	HLA-B38:01	AHFELNAF	0.9968	0.9925	0.1669	455.53	0.1701	27.4	1/982	1/7748
SNV	Breast	ATP9A_L714F_7	HLA-B38:01	NRGEAHFEL	0.9986	0.9703	0.111	33.42	0.0362	27.4	1/982	1/7748
SNV	Breast	CEP76_M179V_3	HLA-B38:01	TRVADSTTM	0.9891	0.6049	0.1742	391.85	0.1584	3.12	1/982	1/7748
SNV	Breast	CEP76_M179V_1	HLA-C05:01	VADSTTML	1	0.9647	0.0341	126.19	0.2399	3.12	1/982	1/7748
SNV	Breast	CEP76_M179V_2	HLA-C05:01	RVADSTTML	0.9971	0.9136	0.8231	15.78	0.1122	3.12	1/982	1/7748
SNV	Breast	CEP76_M179V_1	HLA-C05:01	VADSTTMLSI	0.9999	0.8668	0.0968	168.4	0.2689	3.12	1/982	1/7748
SNV	Breast	CEP76_M179V_2	HLA-C12:03	RVADSTTML	0.992	0.972	0.339	2.88	0.0264	3.12	1/982	1/7748
SNV	Breast	CIT_S1669F_1	HLA-B38:01	FHLPAQPDI	0.994	0.9944	0.0344	206.07	0.1098	4.59	1/982	1/7748
SNV	Breast	CIT_S1669F_9	HLA-C12:03	KVKQSLAQF	0.9202	0.9434	0.6339	101.19	0.5253	4.59	1/982	1/7748
SNV	Breast	KMT2C_I1381V_7	HLA-C12:03	TSRQSKVSL	0.9893	0.9638	0.7398	189.67	0.7127	9.16	1/982	1/7748
SNV	Breast	CAPZA2_Y198F_1	HLA-C07:01	FYEDGNVQL	0.8683	0.5538	0.1643	389.35	0.157	27.75	1/982	1/7748
SNV	Breast	CAPZA2_Y198F_1	HLA-C04:01	FYEDGNVQL	0.9995	0.6679	0.0036	2.08	0.0053	27.75	1/982	1/7748
SNV	Breast	CAPZA2_Y198F_2	HLA-C04:01	HFYEDGNVQL	0.9953	0.8033	0.1935	455.48	0.1478	27.75	1/982	1/7748
SNV	Breast	CAPZA2_Y198F_1	HLA-C04:01	FYEDGNVQLV	0.9997	0.7996	0.0594	119.61	0.0782	27.75	1/982	1/7748
SNV	Breast	CPED1_M639R_9	HLA-A03:01	ASYPLGLGR	0.9444	0.575	0.2365	15.64	0.1211	2.46	1/982	1/7748
SNV	Breast	CPED1_M639R_2	HLA-C07:01	GRNKISIFV	0.969	0.5479	0.2581	381.8	0.1557	2.46	1/982	1/7748
SNV	Breast	GPRIN3_S699T_8	HLA-C04:01	TWEVYGATL	0.941	0.9471	0.1048	82.65	0.0694	3.16	1/982	1/7748
SNV	Breast	LRBA_P478A_2	HLA-B35:01	FALFAQLDY	0.9936	0.9165	0.0478	51.85	0.2475	16.13	1/982	1/7748
SNV	Breast	METTL7B_P166Q_3	HLA-C07:01	LRQGGVLFF	0.9959	0.7691	0.0313	16.35	0.0328	4.89	1/982	1/7748
SNV	Breast	STARD4_Q183E_3	HLA-B35:01	IPESAVDTAM	0.9774	0.7651	0.2547	18.61	0.1716	1.83	1/982	1/7748
SNV	Breast	CACNB1_S70Y_5	HLA-B35:03	RPSDYDVSL	0.9723	0.8104	0.0715	6.55	0.0276	3.03	1/982	1/7748
SNV	Breast	DROSHA_F78C_8	HLA-A02:01	FLPPRPDCV	0.9756	0.8251	0.2829	48.04	0.2979	30.79	1/982	1/7748
SNV	Breast	DROSHA_F78C_8	HLA-C05:01	FLPPRPDCV	0.6702	0.9943	0.3879	412.03	0.3789	30.79	1/982	1/7748
SNV	Breast	TEX15_P1734L_10	HLA-A02:01	TLYAELLGKL	0.9819	0.5783	0.7874	373.69	0.6112	1.2	1/982	1/7748
SNV	Breast	AGO2_S205F_10	HLA-B44:03	REVWFGFHQF	0.997	0.9407	0.0229	14.53	0.1422	6.54	1/982	1/7748
SNV	Breast	ARHGEF10_E541Q_8	HLA-C16:01	ATKPAFLQF	0.9757	0.9631	0.0357	29.97	0.2137	9.63	1/982	1/7748
SNV	Breast	ATG5_L96V_3	HLA-A02:05	SAVPWNITV	0.9504	0.5587	0.2435	387.45	0.458	31.78	1/982	1/7748
SNV	Breast	ATG5_L96V_3	HLA-C16:01	SAVPWNITV	0.9434	0.9837	0.0515	6.22	0.0621	31.78	1/982	1/7748
SNV	Breast	ATP6V0A2_V219L_6	HLA-B44:03	PETGELIKW	0.9764	0.9611	0.4318	128.97	0.3025	4.68	1/982	1/7748
SNV	Breast	ATP6V0A2_V219L_3	HLA-B44:03	GELIKWYVF	0.9966	0.8978	0.218	258.04	0.357	4.68	1/982	1/7748
SNV	Breast	C3_S351F_11	HLA-B44:03	AERSGIPIVTF	0.9997	0.9175	0.1384	115.78	0.2944	384.77	1/982	1/7748
SNV	Breast	C3_S351F_3	HLA-C07:02	VTFPYQIHF	0.9517	0.9359	0.659	98.5	0.1927	384.77	1/982	1/7748
SNV	Breast	C3_S351F_9	HLA-C16:01	RSGIPIVTF	0.7099	0.9784	0.3891	30.48	0.2164	384.77	1/982	1/7748
SNV	Breast	C3_S351F_3	HLA-C16:01	VTFPYQIHF	0.8764	0.9481	0.0241	9.85	0.0982	384.77	1/982	1/7748
SNV	Breast	CACNA1C_D420H_5	HLA-B07:02	KARGHFQKL	0.9064	0.6333	0.1021	298.21	0.3564	1.29	1/982	1/7748
SNV	Breast	CACNA1C_D420H_5	HLA-C16:01	KARGHFQKL	0.6666	0.9792	0.03	11.5	0.1114	1.29	1/982	1/7748
SNV	Breast	CACNA1D_T634A_7	HLA-C16:01	KVTRHWASL	0.914	0.9831	1.5263	287.22	0.6807	14.93	1/982	1/7748
SNV	Breast	CACNG4_S253L_9	HLA-C16:01	SSSRSTEAL	0.8065	0.9878	0.3205	490.82	0.8379	81.94	1/982	1/7748
SNV	Breast	CHST2_R365H_8	HLA-C07:02	SRDPRAHHM	0.9812	0.8648	0.0026	4.93	0.0185	4.65	1/982	1/7748
SNV	Breast	CMYA5_E4026Q_5	HLA-A02:05	FINAQSEQL	0.9785	0.5303	0.2759	11.2	0.079	3.02	1/982	1/7748
SNV	Breast	CMYA5_E4026Q_5	HLA-C16:01	FINAQSEQL	0.98	0.9832	0.5766	279.46	0.6728	3.02	1/982	1/7748
SNV	Breast	DNAH5_L3643V_3	HLA-C16:01	LSVGRPLLI	0.8857	0.9582	0.2784	431.64	0.7967	2.99	1/982	1/7748
SNV	Breast	FKBP10_D487N_3	HLA-B44:03	RENGLPTGY	0.9971	0.927	0.083	1.41	0.0178	196.75	1/982	1/7748
SNV	Breast	FKBP10_D487N_3	HLA-B44:03	RENGLPTGYL	0.8539	0.9546	0.474	288.21	0.3657	196.75	1/982	1/7748
SNV	Breast	FKBP10_D487N_3	HLA-B44:03	RENGLPTGYLF	0.9996	0.9408	0.1589	33.47	0.1909	196.75	1/982	1/7748
SNV	Breast	GDF9_Q250H_3	HLA-C16:01	SAHNGLFNM	0.8521	0.9818	0.0639	7	0.0699	1.27	1/982	1/7748
SNV	Breast	IL3RA_R305Q_5	HLA-C07:02	TRAWQTSLL	0.8167	0.9663	0.1481	116.71	0.2102	19.11	1/982	1/7748
SNV	Breast	IL3RA_R305Q_4	HLA-C16:01	RAWQTSLL	0.9561	0.9857	0.3575	385.76	0.7649	19.11	1/982	1/7748
SNV	Breast	IL3RA_R305Q_4	HLA-C16:01	RAWQTSLLI	0.9117	0.9839	0.3505	30.33	0.2156	19.11	1/982	1/7748
SNV	Breast	LRRC27_R339Q_2	HLA-A02:05	SQAAALREL	0.9716	0.5663	1.3384	47.24	0.1822	5.63	1/982	1/7748
SNV	Breast	LRRC27_R339Q_2	HLA-C16:01	SQAAALREL	0.9975	0.973	1.9504	225.09	0.6096	5.63	1/982	1/7748
SNV	Breast	MAST4_H326D_4	HLA-B44:03	DELDFLSKHF	0.9994	0.8736	0.1101	7.41	0.1067	10.91	1/982	1/7748
SNV	Breast	METTL23_E179Q_8	HLA-B07:02	LPGRHTVQML	0.9973	0.5159	0.2555	274.14	0.349	41.99	1/982	1/7748
SNV	Breast	NCF2_E173K_1	HLA-B07:02	KPVVIPVGKL	0.958	0.5512	0.31	128.5	0.2839	21.2	1/982	1/7748
SNV	Breast	NQO2_G160E_8	HLA-B44:03	AEMYTKTEV	0.9588	0.9807	0.3876	44.12	0.2157	11.29	1/982	1/7748
SNV	Breast	NQO2_G160E_2	HLA-B44:03	TEVNGDSRY	0.9981	0.9077	0.0897	3.05	0.0611	11.29	1/982	1/7748
SNV	Breast	NQO2_G160E_2	HLA-B44:03	TEVNGDSRYF	0.9979	0.7551	0.062	2.74	0.0549	11.29	1/982	1/7748
SNV	Breast	NRP1_E483K_5	HLA-C07:02	SYINKWLQI	0.5855	0.8392	0.3259	79.04	0.1719	43.26	1/982	1/7748
SNV	Breast	PIK3CA_E545K_5	HLA-B44:03	SEITKQEKDF	0.9989	0.8114	0.0872	10.32	0.1253	10.93	6/982	18/7748
SNV	Breast	PIM2_L305F_3	HLA-B07:02	APFAWSLL	0.9957	0.5339	0.8616	117.94	0.277	29.39	1/982	1/7748
SNV	Breast	PIM2_L305F_5	HLA-B07:02	GPAPFAWSL	0.9983	0.5971	0.035	3.77	0.0621	29.39	1/982	1/7748
SNV	Breast	PIM2_L305F_5	HLA-B07:02	GPAPFAWSLL	0.9948	0.5381	0.1914	101.83	0.2653	29.39	1/982	1/7748
SNV	Breast	PLXDC1_S133L_5	HLA-C07:02	HRQALRVVL	0.9852	0.8922	0.1256	28.07	0.0943	10.84	1/982	1/7748
SNV	Breast	PLXDC1_S133L_9	HLA-C16:01	LSNTHRQAL	0.8965	0.9746	0.1095	15.13	0.1402	10.84	1/982	1/7748
SNV	Breast	PLXDC1_S133L_3	HLA-C16:01	QALRVVLSF	0.9594	0.9802	0.2838	97.93	0.4209	10.84	1/982	1/7748
SNV	Breast	SNX13_R247Q_7	HLA-C16:01	FQNKIMQYF	0.9781	0.9824	1.0139	485.76	0.8345	9.41	1/982	1/7748
SNV	Breast	SPICE1_Q618E_3	HLA-C16:01	KTEAPFVNL	0.9019	0.9732	0.5381	166.04	0.5348	8.85	1/982	1/7748
SNV	Breast	TCP11L2_I434M_8	HLA-B44:03	IEEEDNPMW	0.9959	0.9622	0.1001	16.5	0.1485	3.15	1/982	1/7748
SNV	Breast	TCP11L2_I434M_6	HLA-B44:03	EEDNPMWSL	0.9187	0.9849	0.3351	111.55	0.2916	3.15	1/982	1/7748
SNV	Breast	TCP11L2_I434M_9	HLA-B44:03	SIEEEDNPMW	0.7615	0.963	1.789	59.06	0.2428	3.15	1/982	1/7748
SNV	Breast	TPCN1_H753Y_9	HLA-B44:03	SQMERYQQY	0.9257	0.9251	0.5429	221.17	0.3449	22.21	1/982	1/7748
SNV	Breast	TPCN1_H753Y_9	HLA-C07:02	SQMERYQQY	0.9525	0.9211	0.0447	197.19	0.2682	22.21	1/982	1/7748
SNV	Breast	TPCN1_H753Y_5	HLA-C07:02	RYQQYSMVF	0.6752	0.964	0.106	13.37	0.0604	22.21	1/982	1/7748
SNV	Breast	UMPS_L298F_9	HLA-C16:01	FTLDVMKEF	0.9861	0.9877	0.0784	25.2	0.192	15.78	1/982	1/7748
SNV	Breast	ZNF567_S541T_2	HLA-C16:01	KTFRQKATL	0.9817	0.9612	0.1849	18.34	0.1613	5.42	1/982	1/7748
SNV	Breast	AGL_A176P_4	HLA-C17:01	YSLPNQLEL	0.8906	0.8339	0.013	6.18	0.0226	5.56	1/982	1/7748
SNV	Breast	AGL_A176P_4	HLA-C03:03	YSLPNQLEL	0.9999	0.9726	0.0027	1.52	0.0095	5.56	1/982	1/7748
SNV	Breast	AHCTF1_K321M_7	HLA-C03:03	LAFGNRMCL	0.999	0.9865	0.0466	15.73	0.1168	40.18	1/982	1/7748
SNV	Breast	CEP70_L573V_5	HLA-C17:01	FTNDVLEIL	0.8491	0.7723	0.0349	11.24	0.0409	36.41	1/982	1/7748
SNV	Breast	CEP70_L573V_5	HLA-C03:03	FTNDVLEIL	0.9994	0.9894	0.0452	28.24	0.1622	36.41	1/982	1/7748
SNV	Breast	COL12A1_Y158N_1	HLA-C17:01	NILDFIAAL	0.5156	0.6771	0.2055	205.38	0.3086	179.74	1/982	1/7748
SNV	Breast	COL12A1_Y158N_1	HLA-C03:03	NILDFIAAL	0.9964	0.9877	0.1915	84.72	0.2573	179.74	1/982	1/7748
SNV	Breast	DOCK2_V1747F_9	HLA-A32:01	AAIPLKASF	0.966	0.951	0.2916	54.71	0.1087	2.62	1/982	1/7748
SNV	Breast	DOCK2_V1747F_3	HLA-A32:01	ASFLSQMSF	0.965	0.9429	0.0706	25.55	0.0703	2.62	1/982	1/7748
SNV	Breast	DOCK2_V1747F_9	HLA-C03:03	AAIPLKASF	0.9987	0.9891	0.1156	8.92	0.0751	2.62	1/982	1/7748
SNV	Breast	ETV6_R378P_9	HLA-C17:01	IVDPNGLAPL	0.9616	0.7915	0.2336	35.55	0.1001	56.87	1/982	1/7748
SNV	Breast	ETV6_R378P_9	HLA-C03:03	IVDPNGLAPL	0.9986	0.9736	0.2525	483.41	0.4972	56.87	1/982	1/7748
SNV	Breast	HSD17B4_L221V_5	HLA-C17:01	YVAPVVLWL	0.5487	0.9882	0.0556	5.26	0.02	7.34	1/982	1/7748
SNV	Breast	HSD17B4_L221V_5	HLA-C03:03	YVAPVVLWL	0.9979	0.9884	0.0778	12.94	0.0985	7.34	1/982	1/7748
SNV	Breast	MYH11_E984Q_3	HLA-A32:01	KLQDEILVM	0.9835	0.9798	0.6122	184.33	0.1938	3.05	1/982	1/7748
SNV	Breast	MYH11_E984Q_3	HLA-C17:01	KLQDEILVM	0.728	0.9602	0.0813	87.65	0.1967	3.05	1/982	1/7748
SNV	Breast	PDGFRA_R981P_8	HLA-B55:01	HPAVARMPV	0.9857	0.6967	0.0168	39.19	0.0336	12.84	1/982	1/7748
SNV	Breast	POLR2A_I865M_3	HLA-A32:01	RLMKSMESV	0.8798	0.8755	0.1839	376.23	0.2563	69.98	1/982	1/7748
SNV	Breast	RAB22A_E146A_2	HLA-C03:03	VATSAKNAI	0.9551	0.9924	0.2825	226.9	0.3786	16.89	1/982	1/7748
SNV	Breast	TECPR2_S655R_8	HLA-A32:01	LTVPSSLRW	0.982	0.9732	0.1556	238.84	0.2156	10.19	1/982	1/7748
SNV	Breast	TIMM17B_I131T_8	HLA-A32:01	ALIEGVGTL	0.6594	0.932	0.5982	378.43	0.2569	39.49	1/982	1/7748
SNV	Breast	TIMM17B_I131T_8	HLA-C17:01	ALIEGVGTL	0.5332	0.9448	0.0404	41.54	0.119	39.49	1/982	1/7748
SNV	Breast	TIMM17B_I131T_8	HLA-C03:03	ALIEGVGTL	0.9894	0.9909	0.2106	28.8	0.1634	39.49	1/982	1/7748
SNV	Breast	UCHL5_H140R_6	HLA-A32:01	VIRQVRNSF	0.8524	0.9085	0.6847	315.14	0.2399	41.23	1/982	1/7748
SNV	Breast	ZNF318_R618Q_8	HLA-C03:03	LAARTQEQL	0.9997	0.9919	0.1654	327.3	0.434	12.41	1/982	1/7748
SNV	Breast	LYST_V1744F_9	HLA-C12:02	LLIESLSVF	0.9906	0.9603	0.432	290.42	0.3574	3.47	1/982	1/7748
SNV	Breast	MLXIP_T884M_9	HLA-C12:02	ILRPMVLSM	0.9595	0.9729	0.3629	128.96	0.2119	17.54	1/982	1/7748
SNV	Breast	FANCF_R187W_8	HLA-B40:01	AEAERPAWF	0.973	0.5008	0.2259	9.62	0.2374	19.71	1/982	1/7748
SNV	Breast	FANCF_R187W_9	HLA-B15:17	KAEAERPAW	0.9635	0.975	0.4379	10.57	0.428	19.71	1/982	1/7748
SNV	Breast	FANCF_R187W_4	HLA-B15:17	RPAWFLSSLW	0.8989	0.7983	1.7301	268.2	1.4166	19.71	1/982	1/7748
SNV	Breast	KBTBD7_L479H_8	HLA-B15:17	HSFYSFEHI	0.995	0.7737	0.607	112.2	1.0852	8.92	1/982	1/7748
SNV	Breast	KBTBD7_L479H_1	HLA-B15:17	HIVVQNYLY	0.9495	0.6902	0.8277	209.09	1.3115	8.92	1/982	1/7748
SNV	Breast	KBTBD7_L479H_5	HLA-B15:17	YSFEHIVVQNY	0.9991	0.8571	1.2898	29.4	0.6746	8.92	1/982	1/7748
SNV	Breast	VARS2_L6H_4	HLA-A24:02	SFRPPFWGL	0.917	0.6301	0.1434	36.52	0.3325	13.85	3/982	3/7748
SNV	Breast	VARS2_L6H_4	HLA-A24:02	SFRPPFWGL	0.917	0.6301	0.1434	36.52	0.3325	13.85	3/982	3/7748
SNV	Breast	VARS2_L6H_4	HLA-A24:02	SFRPPFWGL	0.917	0.6301	0.1434	36.52	0.3325	13.85	3/982	3/7748
SNV	Breast	VARS2_L6H_5	HLA-B15:17	ASFRPPFW	0.9965	0.914	0.8339	23.06	0.6161	13.85	1/982	1/7748
SNV	Breast	VARS2_L6H_6	HLA-B15:17	HASFRPPFW	0.9866	0.8655	0.1714	6.33	0.3258	13.85	1/982	1/7748
SNV	Breast	VARS2_L6H_5	HLA-B15:17	ASFRPPFWGL	0.9919	0.9369	1.8591	437.63	1.6498	13.85	2/982	2/7748
SNV	Breast	VARS2_L6H_5	HLA-B15:17	ASFRPPFWGL	0.9919	0.9369	1.8591	437.63	1.6498	13.85	2/982	2/7748
SNV	Breast	ITGA8_V567I_3	HLA-B27:03	HRIFPLVIK	0.9888	0.954	0.1544	4.17	0.075	3.58	1/982	1/7748
SNV	Breast	ITGA8_V567I_3	HLA-B27:03	HRIFPLVIKR	0.9973	0.9709	0.1685	3.36	0.065	3.58	1/982	1/7748
SNV	Breast	CPT1A_L484V_2	HLA-C03:03	HVWEYVMSI	0.9776	0.9956	0.2919	95.45	0.2697	96.59	1/982	1/7748
SNV	Breast	FAM193A_R1235T_8	HLA-B15:01	REVEYFKTF	0.854	0.9284	0.3633	376.49	0.4702	21.67	1/982	1/7748
SNV	Breast	HMGCLL1_P5A_6	HLA-B15:01	SAVKHCLSY	0.9967	0.8682	0.0609	220.86	0.3843	2.02	1/982	1/7748
SNV	Breast	HMGCLL1_P5L_6	HLA-B15:01	SAVKHCLSY	0.9967	0.8682	0.0609	220.86	0.3843	2.02	1/982	1/7748
SNV	Breast	LRP2_R2617L_6	HLA-B15:01	TQRIYLANKY	0.9998	0.6626	0.7641	248.38	0.3996	19.18	1/982	1/7748
SNV	Breast	LRP2_R2617L_5	HLA-B27:05	QRIYLANKY	0.9995	0.6787	0.1914	2.26	0.0727	19.18	1/982	1/7748
SNV	Breast	NLRC4_I924T_8	HLA-B27:05	WRLTDTETR	0.9972	0.7571	0.368	133.47	0.4396	2.7	1/982	1/7748
SNV	Breast	NLRC4_I924T_1	HLA-B27:05	TRILGAFFGK	0.9999	0.7676	0.4901	21.91	0.2554	2.7	1/982	1/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:05	ARHGGWTTK	0.9983	0.8261	0.1474	11.97	0.2093	15.47	11/982	17/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:05	ARHGGWTTKM	0.9998	0.666	0.0388	24.5	0.2651	15.47	11/982	17/7748
SNV	Breast	ASAP2_V596M_2	HLA-C05:01	SMDRTSLHI	0.9999	0.8488	0.0234	12.07	0.0996	4.66	1/982	1/7748
SNV	Breast	SMAD3_A382V_7	HLA-A25:01	FVKGWGVEY	0.9758	0.9659	0.0344	44.28	0.0164	26.4	1/982	1/7748
SNV	Breast	TBCC_V162F_9	HLA-A24:02	AAPGIPPAF	0.896	0.555	0.5496	337.55	0.628	35.83	1/982	1/7748
SNV	Breast	ADCY3_I922T_5	HLA-C05:01	TYDETGVMF	0.9982	0.7941	0.3942	106.22	0.2259	14.73	1/982	1/7748
SNV	Breast	ADCY3_I922T_6	HLA-C05:01	QTYDETGVMF	0.9996	0.9222	1.0634	386.91	0.371	14.73	1/982	1/7748
SNV	Breast	CKAP2L_P138H_5	HLA-B08:01	LSRKHVGSL	0.9855	0.5873	0.0549	220.85	0.2415	6.8	1/982	1/7748
SNV	Breast	FAAH_V309A_6	HLA-A02:01	RLDPTAPPL	0.9892	0.7132	0.2775	6.68	0.1253	51.29	1/982	1/7748
SNV	Breast	FAAH_V309A_6	HLA-C05:01	RLDPTAPPL	0.9999	0.9723	0.012	1.52	0.0144	51.29	1/982	1/7748
SNV	Breast	MN1_P500L_8	HLA-A02:01	GLPGEFTLPV	0.9827	0.7211	0.488	333.04	0.5896	5.33	1/982	1/7748
SNV	Breast	PPARG_L242V_5	HLA-B08:01	DLRAVAKHL	0.9608	0.5038	0.2662	279.22	0.2646	16.29	1/982	1/7748
SNV	Breast	PPARG_L242V_4	HLA-C07:01	LRAVAKHLY	0.995	0.683	0.1736	253.36	0.1247	16.29	1/982	1/7748
SNV	Breast	WDR88_A216T_4	HLA-C05:01	IMDTENITTV	0.9999	0.9677	0.0943	26.24	0.1358	2.73	1/982	1/7748
SNV	Breast	ABCC11_Q1223E_5	HLA-C03:03	SVIPEDPVL	0.9988	0.9958	0.1366	8.04	0.0691	40.98	1/982	1/7748
SNV	Breast	BAP1_D399N_8	HLA-B15:01	QQYSDDENDY	0.9988	0.6332	0.352	476.46	0.5111	58.79	1/982	1/7748
SNV	Breast	CELSR2_D457A_10	HLA-A02:01	YLDAQTGALAV	0.9987	0.8674	0.8448	436.95	0.6457	92.53	1/982	1/7748
SNV	Breast	CELSR2_D457A_4	HLA-C03:03	GALAVVSPL	0.9995	0.9895	0.1915	278.47	0.4079	92.53	1/982	1/7748
SNV	Breast	ERCC5_E399K_6	HLA-A02:01	ALDDDKDVKV	0.991	0.5314	0.6596	56.52	0.3182	15.02	1/982	1/7748
SNV	Breast	F11R_I94M_6	HLA-A03:01	FLPTGMTFK	0.9587	0.5524	0.1929	309.76	0.4254	178.77	1/982	1/7748
SNV	Breast	F11R_I94M_8	HLA-B15:01	VTFLPTGMTF	0.9986	0.9945	0.5092	119.31	0.3039	178.77	1/982	1/7748
SNV	Breast	F11R_I94M_7	HLA-C07:02	TFLPTGMTF	0.6281	0.9949	0.052	8.52	0.04	178.77	1/982	1/7748
SNV	Breast	FBXO18_G466S_2	HLA-C03:03	ASTGKTSTL	0.9985	0.9929	0.1061	181.86	0.3483	38.81	1/982	1/7748
SNV	Breast	FBXO18_G466S_3	HLA-C03:03	FASTGKTSTL	0.9996	0.9946	0.0631	198.24	0.3601	38.81	1/982	1/7748
SNV	Breast	GRIA3_T510S_6	HLA-C03:03	AVAPLSITL	0.9997	0.9807	0.0271	1.81	0.0139	1.07	1/982	1/7748
SNV	Breast	GRIA3_T510S_7	HLA-C03:03	IAVAPLSITL	0.9998	0.9758	0.2796	103.12	0.2777	1.07	1/982	1/7748
SNV	Breast	ITPKB_A677T_6	HLA-B15:01	QLAGHTGSF	0.9987	0.9475	0.0182	10.68	0.1008	45.51	1/982	1/7748
SNV	Breast	ITPKB_A677T_7	HLA-B15:01	IQLAGHTGSF	0.9998	0.8664	0.1084	11.8	0.1067	45.51	1/982	1/7748
SNV	Breast	KLHL28_E106K_7	HLA-C03:03	ISQDTVKSL	0.9998	0.9757	0.0675	62.01	0.2244	13.54	1/982	1/7748
SNV	Breast	MCM3AP_E571K_4	HLA-B15:01	HQFKGDSF	0.9991	0.8284	0.9434	296.06	0.4293	36.31	1/982	1/7748
SNV	Breast	PLXNA2_V783M_8	HLA-A02:01	NLAVDFAMV	0.9777	0.6443	0.365	40.22	0.2806	19.26	1/982	1/7748
SNV	Breast	PPP4C_Q119H_2	HLA-C07:02	RHITQVYGF	0.9209	0.8856	0.2234	200.25	0.2701	166.16	1/982	1/7748
SNV	Breast	SPON1_Q165P_4	HLA-B15:01	SIVPKRIIY	0.961	0.824	0.3141	17.21	0.1301	125.74	1/982	1/7748
SNV	Breast	SPON1_Q165P_3	HLA-C07:02	IVPKRIIYF	0.5172	0.8166	1.4435	152.02	0.2387	125.74	1/982	1/7748
SNV	Breast	TMEM104_E105K_1	HLA-C07:02	KRAEKRPIL	0.9122	0.9173	0.1481	44.89	0.1236	17.93	1/982	1/7748
SNV	Breast	ADAMTS2_R1055W_11	HLA-B58:01	LSRPDPDSPIW	0.9997	0.9288	0.1843	36.27	0.2611	26.34	1/982	1/7748
SNV	Breast	BAP1_G45E_8	HLA-B58:01	KCQGPVYEF	0.9194	0.9638	0.4705	249.45	0.5279	65.74	1/982	1/7748
SNV	Breast	EZH2_T718I_5	HLA-B58:01	RAIQIGEEL	0.9289	0.9913	0.3636	11.85	0.153	32.03	1/982	1/7748
SNV	Breast	EZH2_T718I_5	HLA-B58:01	RAIQIGEELF	0.9969	0.9928	0.3821	6.4	0.1066	32.03	1/982	1/7748
SNV	Breast	EZH2_T718I_5	HLA-B58:01	RAIQIGEELFF	0.9984	0.9911	0.334	400.56	0.6127	32.03	1/982	1/7748
SNV	Breast	CALD1_S743Y_3	HLA-B57:03	GVYSRINEW	0.9893	0.9959	0.7332	5.01	0.0482	49.3	1/982	1/7748
SNV	Breast	CALD1_S743Y_4	HLA-B57:03	VGVYSRINEW	0.9952	0.9946	1.4744	133.03	0.3632	49.3	1/982	1/7748
SNV	Breast	GPR160_F132Y_3	HLA-B57:03	LSYKCQKLF	0.9953	0.7859	0.0155	221.82	0.4446	89.96	1/982	1/7748
SNV	Breast	IGKV1D-12_D104Y_8	HLA-B57:03	ISSLQPEYF	0.9854	0.8866	0.0729	21.15	0.1474	1.16	1/982	1/7748
SNV	Breast	AKR1B1_Q184L_2	HLA-A02:01	NLIECHPYL	0.9946	0.623	0.0669	5.38	0.1095	17.12	1/982	1/7748
SNV	Breast	CPSF1_T266P_7	HLA-A02:01	SLPFDCPQAL	0.61	0.7239	1.0169	90.15	0.3782	63.42	1/982	1/7748
SNV	Breast	DIDO1_A1506T_4	HLA-C07:02	QRATVGVSM	0.9679	0.9438	0.1834	63.94	0.1545	44.88	1/982	1/7748
SNV	Breast	DSE_T3I_8	HLA-B57:01	HTRGAPSVF	0.9845	0.9784	0.6835	15.54	0.136	6.84	1/982	1/7748
SNV	Breast	DSE_T3I_8	HLA-B57:01	HTRGAPSVFF	0.9992	0.9657	0.5923	297.22	0.4212	6.84	2/982	2/7748
SNV	Breast	DSE_T3I_8	HLA-B57:01	HTRGAPSVFF	0.9992	0.9657	0.5923	297.22	0.4212	6.84	2/982	2/7748
SNV	Breast	DSE_T3I_7	HLA-C07:02	TRGAPSVFF	0.7904	0.974	0.1925	191.97	0.2651	6.84	3/982	3/7748
SNV	Breast	DSE_T3I_7	HLA-C07:02	TRGAPSVFF	0.7904	0.974	0.1925	191.97	0.2651	6.84	3/982	3/7748
SNV	Breast	DSE_T3I_7	HLA-C07:02	TRGAPSVFF	0.7904	0.974	0.1925	191.97	0.2651	6.84	3/982	3/7748
SNV	Breast	GATM_E126V_5	HLA-B57:01	KAVAVIEEM	0.9973	0.9913	0.4363	82.06	0.2686	9.27	1/982	1/7748
SNV	Breast	KDM2B_R887W_9	HLA-B57:01	MALANKPLW	0.9997	0.9845	0.0091	1.43	0.0098	9.58	1/982	1/7748
SNV	Breast	KDM2B_R887W_7	HLA-B57:01	LANKPLWRF	0.999	0.9781	0.0656	18.49	0.1481	9.58	1/982	1/7748
SNV	Breast	KDM2B_R887W_10	HLA-B57:01	RMALANKPLW	0.9996	0.9731	0.1864	4.26	0.0555	9.58	1/982	1/7748
SNV	Breast	KIAA1109_R2025K_5	HLA-C07:02	HAFSKQLNL	0.9892	0.9209	0.5032	153.63	0.2398	29.84	1/982	1/7748
SNV	Breast	KIAA1109_R2025K_5	HLA-C06:02	HAFSKQLNL	0.9984	0.9897	0.0771	490.11	0.2057	29.84	1/982	1/7748
SNV	Breast	NUP153_D71N_1	HLA-B57:01	NTSEVPRW	0.9997	0.9161	0.5209	279.7	0.4132	88.46	1/982	1/7748
SNV	Breast	NUP153_D71N_3	HLA-B57:01	STNTSEVPRW	0.9998	0.916	0.1009	3.95	0.05	88.46	1/982	1/7748
SNV	Breast	SIN3A_H818R_8	HLA-B57:01	KIKQIMHRF	0.9587	0.9156	0.3403	10.65	0.1114	41.03	1/982	1/7748
SNV	Breast	SIN3A_H818R_2	HLA-C07:02	HRFIPDLLF	0.8801	0.9426	0.0343	5.46	0.0226	41.03	1/982	1/7748
SNV	Breast	VCAN_D1008G_5	HLA-A02:01	ILVIGQTRL	0.8484	0.7101	1.0813	298.13	0.5716	99.37	1/982	1/7748
SNV	Breast	ZNF135_S64Y_1	HLA-A02:01	YLLEQEAEL	0.9979	0.7839	0.1409	1.1	0.0074	14.83	1/982	1/7748
SNV	Breast	ZNF469_E3898K_4	HLA-B57:01	RTAKAQSDL	0.8678	0.9569	1.8508	344.56	0.4406	2.81	1/982	1/7748
SNV	Breast	ZNF91_C212S_2	HLA-B57:01	KSKECEKTF	0.9973	0.9837	0.0951	5.29	0.0668	16.39	1/982	1/7748
SNV	Breast	ZNF91_C212S_2	HLA-B57:01	KSKECEKTFHW	1	0.996	0.055	139.36	0.313	16.39	1/982	1/7748
SNV	Breast	ABL2_E235Q_3	HLA-C03:04	TAQSRFSTL	0.9997	0.9749	0.0866	25.25	0.1555	19.15	1/982	1/7748
SNV	Breast	CCDC12_R17W_1	HLA-C07:02	WRKERLKAL	0.7886	0.9588	0.2519	187.34	0.2622	17.02	1/982	1/7748
SNV	Breast	GPR87_T6M_5	HLA-C03:04	LAKLPNNEL	0.9993	0.9912	0.1349	55.76	0.2132	3.73	1/982	1/7748
SNV	Breast	LPIN3_T14M_5	HLA-C03:04	TVFGMVKEL	0.9992	0.9923	0.222	34.03	0.1734	11.61	1/982	1/7748
SNV	Breast	MET_I565M_8	HLA-B15:01	QQICLPAMY	0.9994	0.8205	0.0464	149.88	0.3337	12.25	1/982	1/7748
SNV	Breast	MOAP1_R309T_7	HLA-B39:06	VHKTIRTEL	0.9857	0.769	0.328	135.54	0.2193	37.65	1/982	1/7748
SNV	Breast	NFKB1_S571F_3	HLA-C03:04	LIFDDIINM	0.9962	0.9866	0.3653	43.61	0.1912	32.45	1/982	1/7748
SNV	Breast	NLGN4X_V19F_1	HLA-C03:04	FMLNSNVLL	0.9847	0.9876	0.2527	185	0.3506	1.35	1/982	1/7748
SNV	Breast	NR4A1_C475Y_9	HLA-B15:01	GLVLHRLQY	0.9629	0.899	0.2325	123.43	0.3083	7.08	1/982	1/7748
SNV	Breast	NR4A1_C475Y_5	HLA-C07:02	HRLQYARGF	0.8508	0.9093	0.0862	20.26	0.0773	7.08	1/982	1/7748
SNV	Breast	PDZRN3_E388K_1	HLA-B15:01	KEHPSAHEY	0.9906	0.8845	0.169	86.32	0.2729	12.16	1/982	1/7748
SNV	Breast	POLR2H_E33K_7	HLA-B15:01	RLHCESKSF	0.9986	0.9602	0.1041	25.89	0.16	49.71	1/982	1/7748
SNV	Breast	PSMA3_R115T_6	HLA-B39:06	KHLADTVAM	0.9935	0.9346	0.1459	11.6	0.0677	132	1/982	1/7748
SNV	Breast	PSMA3_R115T_5	HLA-B15:01	HLADTVAMY	0.9995	0.973	0.0735	2.51	0.0215	132	1/982	1/7748
SNV	Breast	PSMA3_R115T_1	HLA-B15:01	TVAMYVHAY	0.9942	0.7865	0.1864	28.48	0.1669	132	1/982	1/7748
SNV	Breast	PTPRG_P85A_5	HLA-B39:06	RHQSAIDIL	0.9877	0.6511	0.2702	30.35	0.1142	9.68	1/982	1/7748
SNV	Breast	PTPRG_P85A_2	HLA-B15:01	SAIDILDQY	0.9937	0.932	0.3275	15.62	0.1234	9.68	1/982	1/7748
SNV	Breast	SOGA1_R716L_7	HLA-B39:06	IHAILVLL	0.9997	0.6564	0.2541	246.51	0.2773	26.83	1/982	1/7748
SNV	Breast	TBC1D8B_A251V_5	HLA-C03:04	LANYVIRRL	0.999	0.9922	0.7851	235.65	0.3838	2.54	1/982	1/7748
SNV	Breast	USP25_L228V_8	HLA-B15:01	FMRELRYVF	0.9979	0.9263	0.0396	249.76	0.4004	18.77	1/982	1/7748
SNV	Breast	ZFHX4_S182F_4	HLA-B15:01	QSAFAPMSF	0.9871	0.9408	0.2193	304.58	0.4342	4.68	1/982	1/7748
SNV	Breast	ZFHX4_S182F_3	HLA-B15:01	SAFAPMSFY	0.997	0.9385	0.2215	23.32	0.1524	4.68	1/982	1/7748
SNV	Breast	ZNFX1_L711I_9	HLA-C07:01	FRRNLPMHI	0.9357	0.5963	0.0537	26.58	0.045	48.16	1/982	1/7748
SNV	Breast	APCDD1_R213Q_9	HLA-A02:01	AMHELQLIQV	0.9979	0.5941	0.5616	63.91	0.3339	3.65	1/982	1/7748
SNV	Breast	ARHGEF15_F504Y_5	HLA-A02:01	AVGPYSVYV	0.9807	0.6555	0.2375	6.55	0.1239	1.39	1/982	1/7748
SNV	Breast	ARHGEF15_F504Y_5	HLA-C15:02	AVGPYSVYV	0.9963	0.9401	0.6541	6.98	0.0601	1.39	1/982	1/7748
SNV	Breast	C6orf89_R243C_4	HLA-A02:01	QMLCELFPV	0.997	0.7584	0.0136	344.19	0.5949	93.48	1/982	1/7748
SNV	Breast	CELSR2_T467I_2	HLA-C15:02	TIKEYTLRV	0.9964	0.8901	1.5928	259.59	0.58	38.92	1/982	1/7748
SNV	Breast	GPR17_P173S_1	HLA-A02:01	SLYAHLACA	0.9794	0.5512	0.1881	195.48	0.5032	3.39	1/982	1/7748
SNV	Breast	HIST1H2AD_A54S_4	HLA-A02:01	YLASVLEYL	0.9974	0.7158	0.0029	1.17	0.0108	3.03	1/982	1/7748
SNV	Breast	HIST1H2AD_A54S_4	HLA-C15:02	YLASVLEYL	0.9425	0.9251	1.0265	111.3	0.4132	3.03	1/982	1/7748
SNV	Breast	HIST1H2AD_A54S_4	HLA-C08:02	YLASVLEYL	0.8528	0.9815	0.9211	186.19	0.0949	3.03	1/982	1/7748
SNV	Breast	HYAL2_A284G_5	HLA-C15:02	RTHHGNHAL	0.9965	0.9392	0.0045	7.96	0.0701	38.22	1/982	1/7748
SNV	Breast	NARS2_R418H_1	HLA-A02:01	HLARSGLTEV	0.9593	0.646	0.6281	97.32	0.388	34.2	1/982	1/7748
SNV	Breast	NDUFS2_D455N_8	HLA-C15:02	VAIIGTQNI	0.9985	0.9282	0.3065	138.26	0.4516	118.7	1/982	1/7748
SNV	Breast	PPP1R9A_A525V_9	HLA-A02:01	SIIGMGVGV	0.9668	0.6335	0.5524	21.73	0.2244	7.64	1/982	1/7748
SNV	Breast	PPP1R9A_A525V_9	HLA-C15:02	SIIGMGVGV	0.9937	0.9122	1.2334	476.23	0.7599	7.64	1/982	1/7748
SNV	Breast	PPP1R9A_A525V_2	HLA-C15:02	GVDAGLEKL	0.9797	0.9425	0.2943	387.33	0.7018	7.64	1/982	1/7748
SNV	Breast	PPP1R9A_A525V_2	HLA-C08:02	GVDAGLEKL	0.9999	0.9889	0.0341	442.19	0.1317	7.64	1/982	1/7748
SNV	Breast	SNX25_V53M_5	HLA-A02:01	RLSHMDVVKV	0.9888	0.6763	0.4074	499.53	0.6752	13.06	1/982	1/7748
SNV	Breast	SNX25_V53M_3	HLA-B14:02	SHMDVVKVV	0.9764	0.67	0.078	264.84	0.0639	13.06	1/982	1/7748
SNV	Breast	SUZ12_Q95H_10	HLA-A02:01	FLQAFEKPTHI	0.9871	0.5788	1.6803	30.6	0.2539	32.05	1/982	1/7748
SNV	Breast	SUZ12_Q95H_8	HLA-C15:02	QAFEKPTHI	0.9993	0.9307	0.0204	14.13	0.1116	32.05	1/982	1/7748
SNV	Breast	TCHHL1_Q717L_6	HLA-C15:02	RATEALNTL	0.9996	0.9366	0.0297	5.23	0.0443	1.87	1/982	1/7748
SNV	Breast	TCHHL1_Q717L_5	HLA-C15:02	ATEALNTLL	0.9549	0.8491	0.285	56.02	0.2905	1.87	1/982	1/7748
SNV	Breast	TCHHL1_Q717L_6	HLA-C15:02	RATEALNTLL	0.9988	0.9016	0.7759	407.06	0.7158	1.87	1/982	1/7748
SNV	Breast	TCHHL1_Q717L_6	HLA-C08:02	RATEALNTL	0.9962	0.9883	0.4348	278.43	0.1109	1.87	1/982	1/7748
SNV	Breast	ZSCAN21_L88V_1	HLA-A02:01	VVLEQFLTI	0.9607	0.5657	0.4094	184.57	0.4936	7.57	1/982	1/7748
SNV	Breast	ZSCAN21_L88V_1	HLA-C15:02	VVLEQFLTI	0.997	0.8808	0.3176	19.85	0.1452	7.57	1/982	1/7748
SNV	Breast	AIFM2_L318V_7	HLA-A30:01	SVKQRPVQA	0.9866	0.6098	0.7296	289.72	0.1158	12.08	1/982	1/7748
SNV	Breast	AIFM2_L318V_5	HLA-A30:01	KQRPVQAYK	0.9984	0.7024	0.0164	6.4	0.0067	12.08	1/982	1/7748
SNV	Breast	ANAPC1_S922F_10	HLA-C06:02	NRFSFRHSTF	0.9473	0.95	0.1419	495.13	0.2068	7.89	1/982	1/7748
SNV	Breast	ATRN_S385F_3	HLA-C07:01	NRFVNNVVV	0.9619	0.6269	0.1959	450.42	0.1672	45.48	1/982	1/7748
SNV	Breast	BMI1_D77H_5	HLA-A30:01	KTLQHIVYK	0.9986	0.6157	0.0015	9.62	0.0082	60.45	1/982	1/7748
SNV	Breast	CPSF7_E169K_10	HLA-A30:01	ATRQNLSQFK	0.9978	0.716	0.4494	343.27	0.1298	67.05	1/982	1/7748
SNV	Breast	CUL4B_H335Y_3	HLA-A30:01	RAYIISDQK	0.9915	0.8233	0.0262	160.9	0.077	53.56	1/982	1/7748
SNV	Breast	CXorf57_E23K_5	HLA-B08:01	WPNPKRNRA	0.9542	0.6665	1.0802	496.75	0.3327	1.77	1/982	1/7748
SNV	Breast	F8_S465L_9	HLA-C07:01	TREAIQHEL	0.9975	0.7603	0.1348	106.06	0.0894	13.25	1/982	1/7748
SNV	Breast	FAM13A_D126N_7	HLA-B08:01	FLRELPNSL	0.9868	0.731	0.0032	7.15	0.0307	15.9	1/982	1/7748
SNV	Breast	FAM161B_R448T_6	HLA-A30:01	KAFQRTAAK	0.9992	0.8083	0.0021	11.3	0.0088	17.42	1/982	1/7748
SNV	Breast	FAM76B_E46K_3	HLA-A30:01	RSKFQQESK	0.9974	0.9026	0.0125	210.01	0.0923	11.75	1/982	1/7748
SNV	Breast	GREB1L_E490K_6	HLA-B08:01	EFTLRKRAL	0.9844	0.7619	0.2662	115.93	0.1816	10.75	1/982	1/7748
SNV	Breast	HDAC8_L155V_2	HLA-C06:02	YVNDAVLGI	0.8441	0.98	0.8285	378.08	0.1797	8.82	1/982	1/7748
SNV	Breast	HECTD1_E2239K_1	HLA-C07:01	KRITKLFHF	0.999	0.5475	0.0041	113.01	0.0925	55.46	1/982	1/7748
SNV	Breast	HMGCR_I354M_1	HLA-A30:01	MTSPVVTQK	0.995	0.8057	0.0686	174.37	0.0809	33.58	1/982	1/7748
SNV	Breast	IQGAP3_S1424L_8	HLA-B08:01	EPLRRHRL	0.9979	0.5274	0.1575	78.71	0.1512	5.78	1/982	1/7748
SNV	Breast	IQGAP3_S1424L_8	HLA-B08:01	EPLRRHRLL	0.9824	0.5336	0.1401	20.74	0.0653	5.78	1/982	1/7748
SNV	Breast	IQGAP3_S1424L_3	HLA-C07:01	HRLLTAHSL	0.999	0.7596	0.0107	10.8	0.021	5.78	1/982	1/7748
SNV	Breast	LRRFIP2_E259Q_7	HLA-A30:01	ASRGRRQSV	0.9761	0.7254	0.2335	312.68	0.121	15.3	1/982	1/7748
SNV	Breast	MFF_E216K_10	HLA-A30:01	RVCPPHMLPK	0.9991	0.8232	0.2514	465.47	0.1681	32.63	1/982	1/7748
SNV	Breast	MRPS35_E100K_6	HLA-B08:01	VPMAKKGNL	0.9879	0.7083	0.1181	15.18	0.0543	105.18	1/982	1/7748
SNV	Breast	MRPS35_E100K_4	HLA-B08:01	MAKKGNLEL	0.9969	0.808	0.0338	127.21	0.1919	105.18	1/982	1/7748
SNV	Breast	NEDD8_I26M_2	HLA-A30:01	RMKERVEEK	0.9984	0.8321	0.0384	68.34	0.0336	38.13	1/982	1/7748
SNV	Breast	NLN_Q578H_4	HLA-A30:01	TLRHIVLSK	0.9979	0.7632	0.0394	198.05	0.0882	10.37	1/982	1/7748
SNV	Breast	NLN_Q578H_6	HLA-B08:01	LLTLRHIVL	0.9974	0.666	0.0563	143.75	0.2043	10.37	1/982	1/7748
SNV	Breast	PI4KA_E129K_10	HLA-A30:01	KGRGALPVAK	0.9983	0.9704	1.9974	197.08	0.0879	42.66	1/982	1/7748
SNV	Breast	PI4KA_E129K_5	HLA-B08:01	LPVAKSFSF	0.9833	0.7463	0.159	483.13	0.329	42.66	1/982	1/7748
SNV	Breast	PIK3CA_H1047L_2	HLA-A30:01	ALHGGWTTK	0.9822	0.9693	0.0182	120.7	0.0612	19.71	1/982	3/7748
SNV	Breast	PPA1_E184K_8	HLA-A30:01	RLKPGYLKA	0.9908	0.9371	0.0639	32.35	0.017	88.32	1/982	1/7748
SNV	Breast	RALGAPB_E1386Q_8	HLA-A30:01	SLRSTTLQK	0.9975	0.7214	0.0219	34.5	0.0177	37.65	1/982	1/7748
SNV	Breast	RGS12_S649L_8	HLA-C07:01	QRTSARRLF	0.9959	0.5794	0.1915	291.17	0.1352	8.03	1/982	1/7748
SNV	Breast	SIPA1L2_L566V_8	HLA-A30:01	GTARGLPVK	0.9909	0.9432	0.2539	276.01	0.1126	18.75	1/982	1/7748
SNV	Breast	SLC26A1_I125M_8	HLA-C07:01	SRHVSVGMF	0.9978	0.5478	0.076	298.77	0.1372	3.5	1/982	1/7748
SNV	Breast	SLFN5_M811I_1	HLA-B08:01	IRKRKLSQL	0.9398	0.8051	0.2081	158.93	0.213	42.19	1/982	1/7748
SNV	Breast	TCIRG1_S474L_9	HLA-C07:01	SRATSIFPL	0.9988	0.7686	0.0107	485.24	0.1725	55.65	1/982	2/7748
SNV	Breast	TMED7_E180K_3	HLA-A30:01	RAKDLNTRV	0.9945	0.9375	0.1209	421.11	0.1571	106.52	1/982	1/7748
SNV	Breast	USP1_S353F_9	HLA-A30:01	ATKQPSILF	0.7766	0.8583	0.5609	485.68	0.1728	59.79	1/982	1/7748
SNV	Breast	USP1_S353F_9	HLA-A30:01	ATKQPSILFK	0.9991	0.7712	0.221	115.91	0.0585	59.79	1/982	1/7748
SNV	Breast	UTRN_D808H_6	HLA-B08:01	YFKQLHEL	0.9796	0.5999	0.4751	433.36	0.3145	59.73	1/982	1/7748
SNV	Breast	UTRN_D808H_7	HLA-C06:02	AYFKQLHEL	0.5062	0.9948	0.0504	445.45	0.1958	59.73	1/982	1/7748
SNV	Breast	VPS13C_E1451K_5	HLA-B08:01	RPLHKLNVL	0.9966	0.6072	0.0103	15.15	0.0543	24.29	1/982	1/7748
SNV	Breast	WDR47_D179Y_1	HLA-C07:01	YRKLSEAGF	0.9666	0.6071	0.0993	230.7	0.1212	17.15	1/982	1/7748
SNV	Breast	ZBED8_D41N_3	HLA-B08:01	NANLRPSKL	0.9942	0.8632	0.0814	4.95	0.0205	7.37	1/982	1/7748
SNV	Breast	ZNF630_R81T_8	HLA-C07:01	SRWIYPDTV	0.9681	0.7083	0.1144	207.99	0.1173	4.45	1/982	1/7748
SNV	Breast	ZNF836_E168K_9	HLA-A30:01	KIYECNQSK	0.9972	0.7303	0.0061	299.41	0.118	15.34	1/982	1/7748
SNV	Breast	ANKS1B_Q272E_4	HLA-B35:01	HPSEKSLQI	0.9358	0.7311	0.2931	328.8	0.4362	5.21	1/982	1/7748
SNV	Breast	ILK_M301I_5	HLA-B35:01	FALDIARGM	0.9894	0.9578	0.1404	18.12	0.17	12.73	1/982	1/7748
SNV	Breast	LMTK3_P1457T_9	HLA-B07:02	APDARPAGTV	0.9984	0.7922	0.2422	399.35	0.3822	8.27	1/982	1/7748
SNV	Breast	SEC61A1_M243I_9	HLA-C07:02	YRQNLPNLI	0.9162	0.9537	0.1575	14.61	0.0643	279.84	1/982	1/7748
SNV	Breast	SGSM2_E623K_1	HLA-A03:01	KAHPATRTK	0.9957	0.6048	0.1898	140.53	0.3172	22.22	1/982	1/7748
SNV	Breast	CDK5RAP2_F496L_2	HLA-A02:01	KLNEKDLEV	0.9982	0.8082	0.3601	1.78	0.0385	44.65	1/982	1/7748
SNV	Breast	COL6A3_T2880M_9	HLA-C03:04	TTTKPVTTM	0.9932	0.9828	0.1374	165.12	0.3351	113.07	1/982	1/7748
SNV	Breast	DMRTA1_S453P_7	HLA-A02:01	GLSGFMPPYL	0.9888	0.7552	0.3941	24.09	0.2332	1.1	1/982	1/7748
SNV	Breast	DMRTA1_S453P_3	HLA-A02:01	FMPPYLTPGL	0.9791	0.8182	0.2478	404.96	0.6289	1.1	1/982	1/7748
SNV	Breast	HPGDS_G136V_3	HLA-A02:01	YLVGREWLI	0.9936	0.56	0.0288	2.98	0.0653	2.23	1/982	1/7748
SNV	Breast	PLCL2_V243L_6	HLA-C03:04	VANIWLTGL	0.9991	0.9935	0.3251	388.24	0.4617	8.55	1/982	1/7748
SNV	Breast	PLCL2_V243L_9	HLA-C08:02	SADVANIWL	0.9993	0.9725	0.0325	67.65	0.0558	8.55	1/982	1/7748
SNV	Breast	POU6F1_R235H_4	HLA-A02:01	TLFHTQPLL	0.9792	0.7695	0.1121	18.35	0.2101	6.9	1/982	1/7748
SNV	Breast	TMEM204_T180M_3	HLA-C03:04	LAMLAAAML	0.9974	0.9883	0.2916	17.28	0.126	18.1	1/982	1/7748
SNV	Breast	ZNF426_Y431H_5	HLA-C03:04	KVFGHPSCL	0.9853	0.9965	0.041	58	0.2174	14.38	1/982	1/7748
SNV	Breast	MRTO4_A161T_8	HLA-A03:01	RQLGLPTTLK	0.9969	0.5166	0.1749	5.29	0.0556	73.64	1/982	2/7748
SNV	Breast	OFD1_S669N_7	HLA-B07:02	SPLAAKNPPSL	0.9999	0.5217	0.1032	33.39	0.1826	41.41	1/982	1/7748
SNV	Breast	PARP14_L860V_3	HLA-A02:01	RLVPGNATI	0.9519	0.7283	0.2524	15.07	0.1931	7.63	1/982	1/7748
SNV	Breast	SRPRB_V42M_7	HLA-A02:01	TLLSVVMAV	0.9875	0.6996	0.0191	2.72	0.059	65.2	1/982	1/7748
SNV	Breast	SRPRB_V42M_9	HLA-B35:03	DPTLLSVVM	0.9751	0.7017	0.1	72.6	0.0897	65.2	1/982	1/7748
SNV	Breast	SSFA2_N186K_8	HLA-B35:03	DPEEILYKL	0.8814	0.8027	0.1515	66.9	0.087	61.85	1/982	1/7748
SNV	Breast	F2RL3_A314T_8	HLA-C03:04	YSDPSPSTW	0.9487	0.9884	0.408	349.13	0.4445	4.48	1/982	1/7748
SNV	Breast	F2RL3_A314T_8	HLA-C05:01	YSDPSPSTW	0.9982	0.9491	0.1711	4.69	0.0537	4.48	1/982	1/7748
SNV	Breast	FURIN_R498S_1	HLA-C05:01	SGDLAIHLV	0.9999	0.9336	0.0755	88.18	0.2107	69.62	1/982	1/7748
SNV	Breast	HUWE1_I528T_5	HLA-C03:04	FSDGTRHVM	0.9995	0.9722	0.0262	7.56	0.0665	137.69	1/982	1/7748
SNV	Breast	HUWE1_I528T_5	HLA-C05:01	FSDGTRHVM	0.9999	0.8657	0.0055	1.96	0.0236	137.69	1/982	1/7748
SNV	Breast	KRT6B_R182Q_6	HLA-C05:01	FIDKVQFL	1	0.9337	0.0209	56	0.1775	4.92	1/982	1/7748
SNV	Breast	MRC2_N1346S_6	HLA-C03:04	LVWQDSTAV	0.9543	0.9905	1.3154	267.8	0.4016	32.14	1/982	1/7748
SNV	Breast	NIPAL1_A375T_6	HLA-C03:04	TAKKETVSL	0.9994	0.9832	0.1787	98.8	0.2732	1.36	1/982	1/7748
SNV	Breast	NUDCD1_M384I_7	HLA-A02:01	AIAERLIHL	0.9954	0.5099	0.288	6.55	0.1239	41.05	1/982	1/7748
SNV	Breast	NUDCD1_M384I_7	HLA-C03:04	AIAERLIHL	0.9986	0.9846	0.3364	208.67	0.3671	41.05	1/982	1/7748
SNV	Breast	NUDCD1_M384I_7	HLA-C05:01	AIAERLIHL	0.9985	0.9565	0.4678	412.26	0.379	41.05	1/982	1/7748
SNV	Breast	PIGA_S51N_4	HLA-C05:01	GVENHIYQL	0.9999	0.8904	0.2584	416.02	0.3801	10.23	1/982	1/7748
SNV	Breast	TNKS1BP1_P548A_5	HLA-C05:01	QGDDASMSL	0.9998	0.9526	0.0628	15.51	0.1114	36.37	1/982	1/7748
SNV	Breast	TNKS1BP1_P548A_6	HLA-C05:01	VQGDDASMSL	0.9996	0.9535	0.5945	154.39	0.2589	36.37	1/982	1/7748
SNV	Breast	ERG_P423T_8	HLA-C07:01	YKYPSDLTY	0.9771	0.6306	0.4913	113.39	0.0926	11.61	1/982	1/7748
SNV	Breast	ITPR3_C353W_9	HLA-B57:01	NAGEKIKYW	0.9972	0.9294	0.1424	83.86	0.2702	88.97	1/982	1/7748
SNV	Breast	ITPR3_C353W_10	HLA-B57:01	RNAGEKIKYW	0.9998	0.9806	0.4158	20.29	0.1571	88.97	1/982	1/7748
SNV	Breast	SEC24A_A38T_1	HLA-A02:01	TLLSSQESV	0.9866	0.7337	0.3324	22.38	0.2269	32.12	1/982	1/7748
SNV	Breast	ULK3_N352S_6	HLA-C03:03	IVSSSSQAL	0.998	0.9257	0.0631	16.01	0.1186	42.77	1/982	1/7748
SNV	Breast	ARMC5_A409S_8	HLA-C03:04	GALGRLQSL	0.9997	0.9943	0.2527	67.96	0.2341	6.74	1/982	1/7748
SNV	Breast	CDH1_N867S_7	HLA-B15:01	YLNEWGSRF	0.9975	0.8116	0.0609	5.65	0.0559	300.06	1/982	1/7748
SNV	Breast	CDH1_N867S_7	HLA-C07:02	YLNEWGSRF	0.7517	0.9315	0.8174	83.07	0.1762	300.06	1/982	1/7748
SNV	Breast	CDH1_N867S_1	HLA-C07:02	SRFKKLADM	0.8732	0.9417	0.0365	46.94	0.1271	300.06	1/982	1/7748
SNV	Breast	CDH1_N867S_7	HLA-C03:04	YLNEWGSRF	0.9549	0.9816	1.1107	158.92	0.3298	300.06	1/982	1/7748
SNV	Breast	LRRC4C_A192G_6	HLA-A02:01	YISEGGFEGL	0.988	0.8213	0.6539	188.8	0.4975	27.24	1/982	1/7748
SNV	Breast	CORO2A_H456P_8	HLA-B07:02	MPRWAAEPRL	0.9968	0.5316	0.1069	17.47	0.1481	6.38	1/982	1/7748
SNV	Breast	CREBBP_N705S_4	HLA-B07:02	RPPSGPLSL	0.9997	0.6171	0.0133	1.92	0.031	28.7	1/982	1/7748
SNV	Breast	CREBBP_N705S_7	HLA-B07:02	QPVRPPSGPL	0.9982	0.6437	0.0844	2.36	0.0397	28.7	1/982	1/7748
SNV	Breast	CREBBP_N705S_5	HLA-C07:02	VRPPSGPLSL	0.9671	0.9575	0.0638	195.99	0.2675	28.7	1/982	1/7748
SNV	Breast	MCAM_G166R_2	HLA-C07:02	NRYPIPQVI	0.8208	0.9012	0.0676	4.01	0.0144	46.14	1/982	1/7748
SNV	Breast	PER3_K596T_6	HLA-B35:02	IPAIPTSEM	0.9145	0.9481	0.0134	2.89	0.0094	6.23	1/982	1/7748
SNV	Breast	PHKA2_S1203R_1	HLA-B07:02	RAPSGAYGTM	0.9762	0.5344	1.1567	4.33	0.0688	16.8	1/982	1/7748
SNV	Breast	SF3B2_A392T_8	HLA-C07:02	FFKRIFETF	0.7234	0.9697	0.1925	225.51	0.284	70.36	1/982	1/7748
SNV	Breast	SF3B2_A392T_6	HLA-C07:02	KRIFETFKL	0.9525	0.9762	0.0548	61.6	0.1514	70.36	1/982	1/7748
SNV	Breast	TSHZ2_D265E_9	HLA-B07:02	KPRKRAFQEM	0.9992	0.562	0.1449	9.18	0.1063	6.49	1/982	1/7748
SNV	Breast	VIPAS39_E347D_4	HLA-C07:02	HYTDAEGTF	0.5488	0.9717	0.0926	169.33	0.2503	28.29	1/982	1/7748
SNV	Breast	ETV5_H273Q_4	HLA-C04:01	LYEQGVPGM	0.9695	0.8767	0.0901	72.7	0.0653	8.6	1/982	1/7748
SNV	Breast	SERPINA12_V201A_7	HLA-C04:01	NIDPGTAML	0.9999	0.6475	0.0297	112.71	0.0768	1.09	1/982	1/7748
SNV	Breast	CEP70_R49K_1	HLA-C05:01	KTDLKDLII	0.9998	0.8823	0.0943	15.11	0.1102	19.22	1/982	1/7748
SNV	Breast	CLEC17A_A149T_9	HLA-B07:02	SPLQPSLAT	0.9883	0.5532	0.1056	165.76	0.3047	2.39	1/982	1/7748
SNV	Breast	NONO_G98R_2	HLA-C07:02	YRKAGEVFI	0.8293	0.9578	0.2943	127.44	0.2197	225.68	1/982	1/7748
SNV	Breast	RPS5_E98K_5	HLA-C07:02	KHAFKIIHL	0.7329	0.8698	0.3064	280.59	0.3122	577.49	1/982	1/7748
SNV	Breast	RPS5_E98K_4	HLA-C07:02	HAFKIIHLL	0.9868	0.9007	0.3186	145.08	0.2337	577.49	1/982	1/7748
SNV	Breast	ADAMTS3_F1169L_2	HLA-A02:01	SLFAASDSI	0.9587	0.7551	0.1073	37.84	0.2746	3.13	1/982	1/7748
SNV	Breast	ADAMTS6_P631T_8	HLA-C05:01	CADFDNMTF	0.9996	0.9535	0.1133	55.9	0.1774	2.09	1/982	1/7748
SNV	Breast	AGPAT4_S223L_7	HLA-A02:01	SLRNVVLAV	0.9007	0.6879	0.3449	125.42	0.4275	5.53	1/982	1/7748
SNV	Breast	AIFM1_I581M_5	HLA-A02:01	VLWNMFNRM	0.9392	0.5157	1.0429	405.69	0.6293	38.8	1/982	1/7748
SNV	Breast	AK1_P96Q_6	HLA-C05:01	LIDGYQREV	1	0.9519	0.022	27.25	0.1375	9.33	1/982	1/7748
SNV	Breast	ARL9_G85V_2	HLA-C05:01	VVNDRKMFL	0.9898	0.8913	0.3564	231.56	0.3061	2.42	1/982	1/7748
SNV	Breast	ASF1A_G82V_9	HLA-A02:01	FQADAPNPV	0.9919	0.7048	0.2101	15.72	0.1969	30.56	1/982	2/7748
SNV	Breast	ASF1A_G82V_1	HLA-A02:01	VLIPDADAV	0.989	0.7966	0.2101	3.39	0.0731	30.56	1/982	2/7748
SNV	Breast	ASF1A_G82V_1	HLA-A02:01	VLIPDADAVGV	0.9984	0.7038	0.5471	60.36	0.3266	30.56	1/982	2/7748
SNV	Breast	ASF1A_G82V_8	HLA-C05:01	QADAPNPVL	1	0.9853	0.0311	2.48	0.0332	30.56	1/982	1/7748
SNV	Breast	ASF1A_G82V_9	HLA-C05:01	FQADAPNPVL	0.9998	0.9894	0.4678	6.61	0.0701	30.56	1/982	1/7748
SNV	Breast	ASF1A_G82V_8	HLA-C05:01	QADAPNPVLI	1	0.9772	0.1043	272.11	0.3265	30.56	1/982	1/7748
SNV	Breast	ASH1L_E1690D_3	HLA-C05:01	SSDSTSSTV	0.9999	0.8137	0.0081	13.23	0.1039	46.22	1/982	1/7748
SNV	Breast	ASPM_G833E_4	HLA-C05:01	TTYEELISL	0.9964	0.9201	0.8003	462.74	0.3936	7.61	1/982	1/7748
SNV	Breast	ASXL2_S334L_9	HLA-C05:01	ALNNEFFTL	0.9961	0.9618	1.1725	202.89	0.2903	19.84	1/982	1/7748
SNV	Breast	BTN3A1_R315I_9	HLA-A02:01	KLLEELRWI	0.9915	0.8983	0.3	9.74	0.1566	29.01	1/982	1/7748
SNV	Breast	BTN3A1_R315I_9	HLA-A02:01	KLLEELRWISI	0.998	0.7661	1.2589	108.66	0.4029	29.01	1/982	1/7748
SNV	Breast	CCDC87_I541M_2	HLA-A02:01	IMNPELVGL	0.9948	0.7062	0.2758	2.16	0.0492	2.68	1/982	1/7748
SNV	Breast	CCDC87_I541M_2	HLA-C05:01	IMNPELVGL	0.994	0.9842	0.3564	84.47	0.2072	2.68	1/982	1/7748
SNV	Breast	CDC40_G290V_9	HLA-A02:01	HVWSGHTKV	0.8832	0.6242	0.5313	315.03	0.5806	13.94	1/982	1/7748
SNV	Breast	CDC7_L424F_8	HLA-C05:01	ASDDLTAF	1	0.9019	0.1416	409.6	0.3782	9.88	1/982	1/7748
SNV	Breast	CDC7_L424F_8	HLA-C05:01	ASDDLTAFA	0.9994	0.9298	0.4043	384.99	0.3703	9.88	1/982	1/7748
SNV	Breast	DNAH5_A4527D_3	HLA-C05:01	ISDPPTEGV	0.9999	0.9546	0.0043	2.56	0.0342	3.1	1/982	1/7748
SNV	Breast	DNAH5_A4527D_3	HLA-C05:01	ISDPPTEGVYV	1	0.9447	0.0897	147.57	0.2537	3.1	1/982	1/7748
SNV	Breast	DNHD1_H2443Y_1	HLA-A02:01	YQDSKPSLL	0.9407	0.5026	0.7451	386.36	0.6186	1.29	1/982	1/7748
SNV	Breast	DNHD1_H2443Y_1	HLA-C05:01	YQDSKPSLL	1	0.9429	0.032	1.97	0.0238	1.29	1/982	1/7748
SNV	Breast	DNHD1_H2443Y_1	HLA-C05:01	YQDSKPSLLF	1	0.962	0.3059	60.62	0.183	1.29	1/982	1/7748
SNV	Breast	DSTYK_H714N_6	HLA-A02:01	RLVDLNGSV	0.9927	0.5419	0.0897	21.89	0.225	22.57	1/982	1/7748
SNV	Breast	DSTYK_H714N_5	HLA-C05:01	LVDLNGSVI	0.9998	0.956	0.0919	5.61	0.0623	22.57	1/982	1/7748
SNV	Breast	EPHA3_M320I_9	HLA-C05:01	RADKDPPSI	0.9999	0.8939	0.0291	5.13	0.058	7.28	1/982	1/7748
SNV	Breast	ERI3_Q259K_1	HLA-A24:02	KYLGLPVADYF	0.9997	0.5836	0.2421	4.01	0.1227	67.39	1/982	1/7748
SNV	Breast	ESRP1_R115M_9	HLA-C05:01	CTDGQLHVM	1	0.9853	0.0209	212.42	0.2956	56.27	1/982	1/7748
SNV	Breast	FUCA1_N152K_9	HLA-A24:02	NWPSPVSWKW	0.9791	0.7048	0.2351	26.15	0.2974	108.39	1/982	1/7748
SNV	Breast	GMCL1_G215V_1	HLA-A24:02	VYYTSAGTYGL	0.9984	0.5309	0.7388	498.46	0.6966	24.77	1/982	1/7748
SNV	Breast	HBA2_D127Y_3	HLA-A02:01	SLYKFLASV	0.9964	0.6847	0.0109	1.87	0.0412	3.11	1/982	1/7748
SNV	Breast	HDAC4_F746L_6	HLA-A02:01	SLASVLVRL	0.9902	0.684	0.1259	1.76	0.0376	9.15	1/982	2/7748
SNV	Breast	IGF2R_D2219Y_4	HLA-A02:01	YLQYGDLDVV	0.9923	0.5364	0.5524	7.81	0.1385	31.73	1/982	1/7748
SNV	Breast	KIAA0319L_T974K_5	HLA-C05:01	ILDAKDQESL	1	0.9628	0.061	495.68	0.4031	45.09	1/982	1/7748
SNV	Breast	KIAA1033_V158L_2	HLA-C05:01	VLMNVVHQL	0.9003	0.9291	0.8526	88.08	0.2106	29.71	1/982	1/7748
SNV	Breast	KIF5A_L957V_9	HLA-A02:01	SLFQNYQNV	0.9895	0.7493	0.1691	4.82	0.1016	1.34	1/982	1/7748
SNV	Breast	KIF5A_L957V_7	HLA-C05:01	FQNYQNVYL	0.991	0.9645	1.2123	245.85	0.3137	1.34	1/982	1/7748
SNV	Breast	KPNA1_P117T_10	HLA-A02:01	KLLSKEPNPTI	0.9849	0.79	1.2429	149.02	0.457	25.42	1/982	1/7748
SNV	Breast	LAMA4_S1283Y_6	HLA-C05:01	GSDVFYISL	1	0.8895	0.0897	28.27	0.1392	44.59	1/982	1/7748
SNV	Breast	LAMA4_S1283Y_1	HLA-C05:01	YISLDNGTVIM	0.9996	0.835	1.9514	90.72	0.213	44.59	1/982	1/7748
SNV	Breast	LIMA1_P193Q_8	HLA-C05:01	KIEKYNVQL	0.9999	0.9466	0.1324	277.4	0.3289	115.7	1/982	1/7748
SNV	Breast	LMLN_D420Y_7	HLA-A02:01	MLSPYCYTL	0.99	0.6129	0.0085	22.98	0.2292	6.7	1/982	1/7748
SNV	Breast	MAN1A2_E620D_3	HLA-C05:01	NTDAHPLPV	0.9999	0.8899	0.0209	21.77	0.1272	33.24	1/982	1/7748
SNV	Breast	MANBA_S562Y_7	HLA-A24:02	GYQSWPYF	0.9989	0.5425	1.2079	15.33	0.2515	26.65	1/982	1/7748
SNV	Breast	MANBA_S562Y_8	HLA-A24:02	YGYQSWPYF	0.9669	0.5736	0.7326	197.76	0.5478	26.65	1/982	1/7748
SNV	Breast	MANBA_S562Y_9	HLA-A24:02	EYGYQSWPYF	0.9959	0.684	0.4853	10.29	0.2187	26.65	1/982	1/7748
SNV	Breast	MANBA_S562Y_10	HLA-B44:02	SEYGYQSWPY	0.9969	0.5115	0.2116	52.85	0.2136	26.65	1/982	1/7748
SNV	Breast	MARK1_R577L_2	HLA-A02:01	YLPGTTQRV	0.9928	0.665	0.1381	3.05	0.0671	6.21	1/982	1/7748
SNV	Breast	MARK1_R577L_3	HLA-A24:02	AYLPGTTQRV	0.9843	0.7478	0.469	167.76	0.525	6.21	1/982	1/7748
SNV	Breast	MARK1_R577L_2	HLA-C05:01	YLPGTTQRV	0.9057	0.972	0.5746	56.78	0.1785	6.21	1/982	2/7748
SNV	Breast	MED12_F833L_9	HLA-C05:01	TAEDIFAKL	0.9999	0.9291	0.0454	59.37	0.1816	40.57	1/982	1/7748
SNV	Breast	MPHOSPH8_G601V_9	HLA-C05:01	NLDQEDSSV	0.9998	0.9802	0.1271	364.83	0.3635	58.63	1/982	1/7748
SNV	Breast	MUC16_S4332Y_1	HLA-C05:01	YSGDATTHV	0.9994	0.9302	0.1683	35.09	0.1492	1.15	1/982	1/7748
SNV	Breast	NBAS_P1058T_5	HLA-A02:01	GLEKTISFV	0.9741	0.535	0.4415	290.19	0.5673	30.82	1/982	1/7748
SNV	Breast	PAK2_E446K_4	HLA-A02:01	YLNKNPLRA	0.9854	0.558	0.5905	37.81	0.2746	99.19	1/982	1/7748
SNV	Breast	PAK2_E446K_4	HLA-A02:01	YLNKNPLRAL	0.9656	0.507	1.5393	261.35	0.5503	99.19	1/982	1/7748
SNV	Breast	PAPOLG_G653V_4	HLA-C05:01	SIDVTPKRL	0.9999	0.8922	0.022	16.21	0.1135	12.67	1/982	1/7748
SNV	Breast	PARP4_L831I_9	HLA-C05:01	SLDSSGFSI	0.9998	0.8257	0.0147	2.11	0.0268	53.94	1/982	1/7748
SNV	Breast	PLA2R1_F808L_1	HLA-A24:02	LWYQYDVPW	0.9815	0.6244	0.2505	141.61	0.5014	8.23	1/982	1/7748
SNV	Breast	PLA2R1_F808L_1	HLA-A24:02	LWYQYDVPWLF	0.9993	0.6344	0.6713	145.71	0.5054	8.23	1/982	1/7748
SNV	Breast	PLXNC1_S767I_4	HLA-A24:02	TWIIGGQNI	0.9418	0.5731	0.3884	11.77	0.2297	28.58	1/982	1/7748
SNV	Breast	RAB3A_S124L_2	HLA-A02:01	YLWDNAQV	0.9976	0.8523	1.1832	5.14	0.1062	9.34	1/982	1/7748
SNV	Breast	RAB3A_S124L_2	HLA-A02:01	YLWDNAQVL	0.9963	0.7706	0.0556	1.14	0.0098	9.34	1/982	1/7748
SNV	Breast	RAB3A_S124L_2	HLA-A02:01	YLWDNAQVLL	0.9981	0.6796	0.347	1.54	0.0265	9.34	1/982	1/7748
SNV	Breast	RAB3A_S124L_2	HLA-A02:01	YLWDNAQVLLV	0.9996	0.7567	0.5716	3.93	0.081	9.34	1/982	1/7748
SNV	Breast	RAB3A_S124L_3	HLA-A24:02	TYLWDNAQV	0.8847	0.8584	0.2104	80.89	0.423	9.34	1/982	1/7748
SNV	Breast	RAB3A_S124L_3	HLA-A24:02	TYLWDNAQVL	0.9916	0.6282	0.3003	16.89	0.2599	9.34	1/982	1/7748
SNV	Breast	RAB3A_S124L_2	HLA-C05:01	YLWDNAQVL	0.9944	0.9942	0.1355	6.22	0.0672	9.34	1/982	1/7748
SNV	Breast	RAB3A_S124L_1	HLA-C05:01	LWDNAQVLL	0.9997	0.9734	0.2707	186.53	0.2807	9.34	1/982	1/7748
SNV	Breast	RAB3A_S124L_2	HLA-C05:01	YLWDNAQVLL	0.9993	0.9901	0.3564	2.71	0.0362	9.34	1/982	1/7748
SNV	Breast	RIC1_Q1085H_4	HLA-C05:01	FAAHLGFEL	0.9966	0.9868	0.2016	62.24	0.1849	19.31	1/982	1/7748
SNV	Breast	RNF123_D788Y_7	HLA-A02:01	ALRDTEYKL	0.8606	0.553	0.5471	228.47	0.5285	13.29	1/982	1/7748
SNV	Breast	RRM2_M315I_5	HLA-A02:01	KLIGINCTL	0.9836	0.6422	0.1021	12.12	0.174	27.86	1/982	2/7748
SNV	Breast	SGMS1_F393L_6	HLA-A24:02	SYHWPLPW	0.9982	0.8005	0.9275	456.32	0.6811	24.2	1/982	1/7748
SNV	Breast	SGMS1_F393L_4	HLA-A24:02	HWPLPWPVV	0.8802	0.8691	0.63	159.51	0.518	24.2	1/982	1/7748
SNV	Breast	SLC10A3_S446Y_1	HLA-A02:01	YQAPFIVAL	0.9862	0.6233	0.0844	2.7	0.0587	58.08	1/982	1/7748
SNV	Breast	SLC10A3_S446Y_3	HLA-C05:01	YAYQAPFIV	0.8058	0.9856	0.8139	74.14	0.1971	58.08	1/982	1/7748
SNV	Breast	SLC10A3_S446Y_1	HLA-C05:01	YQAPFIVAL	0.9852	0.9757	0.5549	31.07	0.1436	58.08	1/982	1/7748
SNV	Breast	SLC25A12_A86D_4	HLA-A02:01	VLCDPDSMFI	0.9921	0.6545	0.5716	92.15	0.381	28.97	1/982	1/7748
SNV	Breast	SLC25A12_A86D_3	HLA-C05:01	LCDPDSMFI	0.9994	0.9469	0.1381	66.97	0.19	28.97	1/982	1/7748
SNV	Breast	SLC25A12_A86D_4	HLA-C05:01	VLCDPDSMFI	0.9993	0.9506	0.5429	32.06	0.145	28.97	1/982	1/7748
SNV	Breast	SLC30A9_E467D_4	HLA-A02:01	ELLDNDPSV	0.8936	0.7856	0.4984	25.55	0.2381	42.08	1/982	1/7748
SNV	Breast	SLCO4A1_G441V_6	HLA-A02:01	GTFLGVFFV	0.9467	0.7366	0.1121	41.69	0.2841	5.68	1/982	1/7748
SNV	Breast	SMARCA1_A761D_4	HLA-C05:01	AVDDYFREA	0.9998	0.9474	0.3829	348.73	0.3578	29.75	1/982	1/7748
SNV	Breast	SMARCA1_A761D_4	HLA-C05:01	AVDDYFREAL	0.9999	0.977	0.0665	285.15	0.3324	29.75	1/982	1/7748
SNV	Breast	STRIP1_M521I_9	HLA-A02:01	LLPSLPQYI	0.9877	0.5591	0.3137	83.02	0.3676	19.38	1/982	1/7748
SNV	Breast	STRIP1_M521I_10	HLA-A02:01	GLLPSLPQYI	0.9936	0.6049	0.4794	11.3	0.1684	19.38	1/982	1/7748
SNV	Breast	STRIP1_M521I_6	HLA-C05:01	SLPQYIIAL	0.8453	0.8936	0.377	235.98	0.3085	19.38	1/982	1/7748
SNV	Breast	TAF1C_Q152K_1	HLA-B44:02	KDLGGHQPW	0.8533	0.7708	0.2784	269.37	0.3474	19.79	1/982	1/7748
SNV	Breast	TBC1D31_R925M_9	HLA-C05:01	YQEVAKLLM	0.9995	0.9443	0.346	479.34	0.398	3.59	1/982	1/7748
SNV	Breast	TDRD1_G671C_6	HLA-A02:01	VLLDACFAV	0.9979	0.7657	0.0022	4.6	0.098	1.33	1/982	1/7748
SNV	Breast	TEK_N975S_6	HLA-A02:01	ILVGESYVA	0.9811	0.7101	0.49	255.37	0.5465	53.4	1/982	1/7748
SNV	Breast	USP40_H752Q_9	HLA-A02:01	SMNEIDWLQV	0.9984	0.6783	0.6989	29.53	0.2505	16.74	1/982	1/7748
SNV	Breast	WDR19_G341V_9	HLA-A02:01	LLALSTQRV	0.9814	0.5038	0.4415	139.21	0.4453	15.3	1/982	1/7748
SNV	Breast	WDR60_R495L_1	HLA-A02:01	LLIDLDFSF	0.9444	0.5334	0.5524	123.78	0.4252	12.4	1/982	1/7748
SNV	Breast	ZBTB16_R234L_2	HLA-A02:01	GLHPGVAEV	0.9961	0.7456	0.1482	1.42	0.0179	3.33	1/982	1/7748
SNV	Breast	ZNF646_G713W_9	HLA-B44:02	LESPQDPSW	0.9976	0.5107	0.0135	6.96	0.0946	13.38	1/982	1/7748
SNV	Breast	ZNF646_G713W_11	HLA-B44:02	EGLESPQDPSW	0.9954	0.7011	1.8618	351.74	0.3701	13.38	1/982	1/7748
SNV	Breast	ADAMTSL3_L1233F_9	HLA-C16:01	YTWTKDGTF	0.6005	0.9626	0.1804	76.63	0.3708	2.99	1/982	1/7748
SNV	Breast	ALG10B_I393F_5	HLA-A30:01	KSKPFFWNL	0.9936	0.9	0.0425	144.66	0.072	7.87	1/982	1/7748
SNV	Breast	ALG10B_I393F_5	HLA-C16:01	KSKPFFWNL	0.9686	0.9887	0.5381	143.64	0.4999	7.87	1/982	1/7748
SNV	Breast	DUSP19_D63E_8	HLA-C16:01	YVQDLSSEL	0.9924	0.9723	0.1394	7.22	0.0723	2.76	1/982	1/7748
SNV	Breast	DUSP19_D63E_8	HLA-C17:01	YVQDLSSEL	0.8968	0.9254	0.0385	6.43	0.0233	2.76	1/982	1/7748
SNV	Breast	FAP_I47N_8	HLA-C16:01	RALTLKDNL	0.8679	0.9892	1.9504	238.83	0.6269	28.24	1/982	1/7748
SNV	Breast	GAPDH_V220L_5	HLA-C16:01	AVGKLIPEL	0.9506	0.9877	0.7121	250.46	0.6408	1439.18	1/982	1/7748
SNV	Breast	HIST1H2BJ_M60L_3	HLA-C16:01	KALGIMNSF	0.9486	0.9871	0.0934	3.83	0.034	35.99	1/982	1/7748
SNV	Breast	KIAA1109_E2425A_1	HLA-C16:01	AANQGFPAV	0.8003	0.9904	0.1431	9.01	0.0924	26.01	1/982	1/7748
SNV	Breast	KIAA1109_E2425A_1	HLA-C17:01	AANQGFPAV	0.8696	0.9796	0.2657	133.23	0.2452	26.01	1/982	1/7748
SNV	Breast	NPAS2_M492I_5	HLA-B42:01	TPAPIAQF	0.804	0.7334	0.6484	28.11	0.2101	1.87	1/982	1/7748
SNV	Breast	NPAS2_M492I_3	HLA-B42:01	APIAQFSAQF	0.8759	0.8195	0.3896	36.47	0.23	1.87	1/982	1/7748
SNV	Breast	NPAS2_M492I_6	HLA-C16:01	STPAPIAQF	0.7266	0.9723	0.106	67.51	0.345	1.87	1/982	1/7748
SNV	Breast	SLC1A2_A167T_5	HLA-C16:01	SSLDTFLDL	0.8134	0.9812	0.2915	148.21	0.5074	3.37	1/982	1/7748
SNV	Breast	SLC1A2_A167T_4	HLA-C17:01	SLDTFLDLI	0.5585	0.7323	0.1991	228.41	0.3266	3.37	1/982	1/7748
SNV	Breast	SLC30A1_S339F_7	HLA-B42:01	YPLLKEFAL	0.998	0.8568	0.0056	1.79	0.0328	47.89	1/982	1/7748
SNV	Breast	SLC30A1_S339F_9	HLA-C16:01	TTYPLLKEF	0.9739	0.9719	0.1394	9.89	0.0984	47.89	1/982	1/7748
SNV	Breast	SLC9C1_H317Q_6	HLA-C16:01	LLIPAQTYL	0.8951	0.9583	1.0535	28.57	0.2063	1.7	1/982	1/7748
SNV	Breast	SLC9C1_H317Q_6	HLA-C17:01	LLIPAQTYL	0.5927	0.8246	0.0435	6.66	0.0239	1.7	1/982	1/7748
SNV	Breast	TARS2_S280F_3	HLA-C16:01	GIFFPTTEL	0.9632	0.9876	1.346	59.93	0.3207	44.98	1/982	1/7748
SNV	Breast	TARS2_S280F_2	HLA-C16:01	IFFPTTELL	0.9352	0.976	0.9383	162.73	0.5299	44.98	1/982	1/7748
SNV	Breast	TPT1_Y95F_5	HLA-C16:01	YIKDFMKSI	0.5042	0.9623	1.153	131.08	0.481	879.78	1/982	1/7748
SNV	Breast	UGDH_D446N_3	HLA-C16:01	VLNGLHNEL	0.9012	0.9888	1.0786	185.81	0.5618	102.53	1/982	1/7748
SNV	Breast	UGDH_D446N_3	HLA-C17:01	VLNGLHNEL	0.5059	0.9341	0.2491	41.69	0.1194	102.53	1/982	1/7748
SNV	Breast	ATP10A_Y705H_7	HLA-B18:01	DEAALVHAA	0.9254	0.8436	0.1471	29.24	0.0973	10.09	1/982	1/7748
SNV	Breast	CP_K68N_4	HLA-C07:02	RLYNKALYL	0.9252	0.8591	0.8844	19.66	0.0762	1.95	1/982	1/7748
SNV	Breast	CP_K68N_4	HLA-C12:03	RLYNKALYL	0.9069	0.9698	1.5676	21.46	0.2202	1.95	1/982	1/7748
SNV	Breast	DENND4A_I756L_5	HLA-A24:02	RYSSLPQMW	0.9966	0.7635	0.0742	1.58	0.032	18.36	1/982	1/7748
SNV	Breast	DENND4A_I756L_6	HLA-C07:02	KRYSSLPQM	0.9514	0.9422	0.0085	10.08	0.0494	18.36	1/982	1/7748
SNV	Breast	DENND4A_I756L_9	HLA-C12:03	KIAKRYSSL	0.9669	0.9722	1.7088	124.55	0.5808	18.36	1/982	1/7748
SNV	Breast	EEF1A1_H7R_7	HLA-C12:03	KTRINIVVI	0.737	0.9537	1.295	312.29	0.892	3160.11	1/982	1/7748
SNV	Breast	PCDHGA11_H209R_2	HLA-B39:06	ARLLLLTAL	0.9977	0.9329	0.2983	196	0.2543	1.36	1/982	1/7748
SNV	Breast	PCDHGA11_H209R_2	HLA-C07:02	ARLLLLTAL	0.9631	0.9704	0.1184	118.18	0.2116	1.36	1/982	1/7748
SNV	Breast	RNF6_G490E_2	HLA-B18:01	TEFGELSSL	0.9772	0.9419	0.0737	10.15	0.063	86.09	1/982	1/7748
SNV	Breast	RNF6_G490E_8	HLA-C12:03	ILRQIMTEF	0.9857	0.9914	0.934	236.31	0.7963	86.09	1/982	1/7748
SNV	Breast	UBTF_F82L_1	HLA-B39:06	LRTLTELIL	0.9849	0.8284	1.0484	189.63	0.251	104.52	1/982	1/7748
SNV	Breast	UBTF_F82L_6	HLA-B18:01	NEVRKLRTL	0.8075	0.6398	0.2804	411.44	0.2478	104.52	1/982	1/7748
SNV	Breast	WDR4_K168N_3	HLA-B18:01	DENIRVSW	0.9984	0.9293	0.4153	485.08	0.2596	11.68	1/982	1/7748
SNV	Breast	APCDD1_A376E_4	HLA-C08:02	PMDEATASL	0.9997	0.9026	0.1061	244.09	0.106	32.54	1/982	1/7748
SNV	Breast	ATP10D_G760A_6	HLA-A24:02	DFAALAPLTF	0.9975	0.7469	0.5289	26.44	0.2983	8.49	1/982	1/7748
SNV	Breast	ATP10D_G760A_5	HLA-C08:02	FAALAPLTF	0.5334	0.9961	0.3269	128.19	0.0722	8.49	1/982	1/7748
SNV	Breast	ATP10D_G760A_3	HLA-C08:02	ALAPLTFQL	0.9202	0.9976	1.359	455.83	0.1341	8.49	1/982	1/7748
SNV	Breast	COL6A3_A1497V_5	HLA-C07:01	YRSQVPVL	0.9997	0.5741	0.4086	378.32	0.155	66.13	1/982	1/7748
SNV	Breast	GTF3C2_V708I_1	HLA-A24:02	IWSLSGSDW	0.9554	0.6235	0.4816	349.68	0.6342	29.81	1/982	1/7748
SNV	Breast	UQCC2_V35L_6	HLA-B08:01	YLRQRLAQA	0.9965	0.5705	0.071	41.42	0.104	28.38	1/982	1/7748
SNV	Breast	UQCC2_V35L_6	HLA-B08:01	YLRQRLAQAF	0.9958	0.7308	1.0802	179.41	0.2235	28.38	1/982	1/7748
SNV	Breast	ARHGAP18_D448H_3	HLA-B35:01	LPHANRDTL	0.9462	0.9255	0.2489	34.49	0.2148	21.34	1/982	1/7748
SNV	Breast	ATP9A_Q698K_4	HLA-C07:02	TRNKDIHVF	0.9104	0.9372	0.07	29.63	0.0972	102.25	1/982	1/7748
SNV	Breast	ATXN1_P545T_7	HLA-C16:01	VTQAAYTAM	0.7359	0.9837	0.069	18.56	0.1624	10.29	1/982	1/7748
SNV	Breast	ATXN1_P545T_2	HLA-C16:01	YTAMVQAQI	0.76	0.9832	0.9025	469.52	0.8235	10.29	1/982	1/7748
SNV	Breast	EIF4A1_V236F_3	HLA-A02:01	ILFKKEELTL	0.964	0.6546	1.1607	458.84	0.6565	7.89	1/982	1/7748
SNV	Breast	EIF4A1_V236F_9	HLA-C07:02	MRDPIRILF	0.9651	0.882	0.0037	2.28	0.0069	7.89	1/982	1/7748
SNV	Breast	EIF4A1_V236F_10	HLA-C07:02	FMRDPIRILF	0.9827	0.9217	0.3508	78.97	0.1718	7.89	1/982	1/7748
SNV	Breast	EIF4A1_V236F_9	HLA-C16:01	MRDPIRILF	0.8893	0.9858	1.7015	164.12	0.532	7.89	1/982	1/7748
SNV	Breast	ENTPD7_P357S_7	HLA-A02:01	FLDPCLSVGL	0.9932	0.7189	0.4143	5.19	0.107	30.48	1/982	1/7748
SNV	Breast	ERC1_P1006A_2	HLA-C16:01	SADQIIQPL	0.975	0.99	0.1031	20.94	0.1745	18.72	1/982	1/7748
SNV	Breast	GIMAP6_P102T_4	HLA-A02:01	ILSTQVSPEV	0.9955	0.6017	0.6371	310.4	0.5782	10.27	1/982	1/7748
SNV	Breast	GLI2_H84Q_4	HLA-C16:01	HGVQGPPAL	0.7794	0.9931	0.5074	39.27	0.2552	1.18	1/982	1/7748
SNV	Breast	GSK3A_L144V_8	HLA-A02:01	RLAETREVV	0.9927	0.5714	0.6466	404.64	0.6288	69.7	1/982	1/7748
SNV	Breast	HIST1H2AI_N111K_5	HLA-A02:01	GVLPKIQAV	0.9881	0.7	0.4765	8.26	0.1431	27.69	1/982	1/7748
SNV	Breast	HIST1H2AI_N111K_5	HLA-C16:01	GVLPKIQAV	0.8971	0.9908	1.7316	73.93	0.3635	27.69	1/982	1/7748
SNV	Breast	KIAA0319_L901F_1	HLA-A02:01	FLFKVLRV	0.997	0.6426	1.2161	444.71	0.6496	3.88	1/982	1/7748
SNV	Breast	SART3_T705I_1	HLA-B35:01	IVFVSNLPY	0.9698	0.6768	0.0496	241.19	0.3976	42.33	1/982	1/7748
SNV	Breast	SART3_T705I_7	HLA-C16:01	SSKDSIIVF	0.7329	0.9557	0.0969	11.76	0.1135	42.33	1/982	1/7748
SNV	Breast	TMEM86A_R166P_8	HLA-C07:02	WRAMAGLPL	0.8648	0.9803	0.4319	480.7	0.3916	17.66	1/982	1/7748
SNV	Breast	TMEM86A_R166P_7	HLA-C16:01	RAMAGLPL	0.9961	0.9868	1.1024	56.41	0.3084	17.66	1/982	1/7748
SNV	Breast	ULK2_G671R_10	HLA-A03:01	AVFGRSVSTR	0.9943	0.6362	0.2813	16.67	0.1244	20.9	1/982	1/7748
SNV	Breast	ULK2_G671R_10	HLA-A03:01	AVFGRSVSTRK	0.9989	0.7871	0.1769	8.95	0.088	20.9	1/982	1/7748
SNV	Breast	WDR33_P84S_5	HLA-B35:01	RAIQSDAGY	0.9218	0.7514	0.2006	32.47	0.2099	13.99	1/982	1/7748
SNV	Breast	WWC3_S896W_7	HLA-C07:02	SRRARGWPF	0.8174	0.8663	0.3121	163.2	0.2463	61.15	1/982	1/7748
SNV	Breast	ZNF16_D184N_4	HLA-B35:01	HPYNMGGQSF	0.9988	0.821	0.0915	2.52	0.0491	12.72	1/982	1/7748
SNV	Breast	ZNF546_E358K_10	HLA-A03:01	RIHTGERPYK	0.9984	0.5084	0.1452	13.32	0.1127	2.5	1/982	1/7748
SNV	Breast	CXCR3_P107L_1	HLA-A02:01	LLWAVDAAV	0.9934	0.7267	0.047	12.32	0.1754	2.67	1/982	1/7748
SNV	Breast	LMCD1_V349A_4	HLA-A24:02	AYIATKGQL	0.9774	0.6149	0.2151	258.16	0.5849	8.75	1/982	1/7748
SNV	Breast	LMCD1_V349A_4	HLA-A24:02	AYIATKGQLL	0.9938	0.6513	0.2127	21.68	0.2813	8.75	1/982	1/7748
SNV	Breast	LMCD1_V349A_3	HLA-C03:04	YIATKGQLL	0.9982	0.9858	0.1739	35.78	0.1767	8.75	1/982	1/7748
SNV	Breast	LTBP2_R905H_5	HLA-B15:01	RCINHVGSY	0.9875	0.722	0.7468	138.1	0.323	82.62	1/982	1/7748
SNV	Breast	SYF2_R35H_7	HLA-C07:02	KREQRLHKF	0.8693	0.8503	0.0466	102.83	0.1969	50.4	1/982	1/7748
SNV	Breast	SYF2_R35H_4	HLA-C07:02	QRLHKFREL	0.9889	0.9465	0.106	126.78	0.2192	50.4	1/982	1/7748
SNV	Breast	CNNM2_G565E_5	HLA-B44:03	YEVLEIVTL	0.9698	0.9504	0.1881	73.64	0.2607	2.03	1/982	1/7748
SNV	Breast	DAPK2_E353G_4	HLA-A68:01	DTEGDIARR	0.9392	0.6229	0.7629	123.77	0.4126	7.38	1/982	1/7748
SNV	Breast	DIAPH2_E499G_9	HLA-B44:03	EESEQKAAGF	0.9991	0.6986	0.1039	110.45	0.2909	11.86	1/982	1/7748
SNV	Breast	DIAPH2_E499G_4	HLA-B58:02	KAAGFSKKF	0.9967	0.9808	0.1355	329.82	0.0428	11.86	1/982	1/7748
SNV	Breast	FOCAD_D433H_8	HLA-B44:03	TDSSAASHW	0.9613	0.9847	0.3515	408.3	0.393	13.77	1/982	1/7748
SNV	Breast	TPR_Q729L_5	HLA-B44:03	YEMLLDNVEGY	0.9985	0.9583	0.218	30.51	0.183	55.68	1/982	1/7748
SNV	Breast	WAC_H102Q_5	HLA-B44:03	QENSQNHSAL	0.9658	0.9641	0.3515	402.24	0.3918	47.1	1/982	1/7748
SNV	Breast	ACTN1_T594A_3	HLA-B15:17	YTAITPQEI	0.9583	0.8959	0.7174	16.74	0.5359	20.51	1/982	1/7748
SNV	Breast	ACTN1_T594A_3	HLA-C05:01	YTAITPQEI	0.9988	0.9429	0.3299	39.89	0.1566	20.51	1/982	1/7748
SNV	Breast	ATP2A3_R686H_1	HLA-B15:17	HIVENLQSF	0.9943	0.9561	0.479	8.02	0.3708	2.04	1/982	1/7748
SNV	Breast	ATP2A3_R686H_3	HLA-B15:17	KSHIVENLQSF	0.9997	0.969	0.9253	84.94	0.9971	2.04	1/982	1/7748
SNV	Breast	ATP2A3_R686H_1	HLA-B57:03	HIVENLQSF	0.8178	0.9474	1.0326	458.32	0.5862	2.04	1/982	1/7748
SNV	Breast	ERBB2_S310F_6	HLA-C05:01	STDVGFCTL	0.9999	0.9527	0.0088	8.95	0.0818	348.79	1/982	6/7748
SNV	Breast	LRRC41_S496F_9	HLA-B15:17	VSLESLTLF	0.9978	0.9225	0.0056	1.36	0.0369	20.37	1/982	1/7748
SNV	Breast	LRRC41_S496F_9	HLA-B15:17	VSLESLTLFY	0.9977	0.9109	0.6814	23.81	0.6238	20.37	1/982	1/7748
SNV	Breast	LRRC41_S496F_9	HLA-B57:03	VSLESLTLF	0.9929	0.9859	0.0099	3.34	0.0309	20.37	1/982	1/7748
SNV	Breast	SLCO2B1_S178T_1	HLA-B15:17	TSYTETQHL	0.9953	0.9542	0.2507	11.19	0.4409	4.06	1/982	1/7748
SNV	Breast	SLCO2B1_S178T_1	HLA-B57:03	TSYTETQHL	0.9627	0.9913	0.3701	126.07	0.3554	4.06	1/982	1/7748
SNV	Breast	VWF_P1480L_9	HLA-A68:02	DMAQVTVGL	0.8572	0.5543	0.1055	85.6	0.211	12.57	1/982	1/7748
SNV	Breast	BUB3_V120L_6	HLA-C04:01	SWDQTLKL	1	0.7848	0.0069	75.25	0.0664	49.49	1/982	1/7748
SNV	Breast	LIN9_T267I_8	HLA-B35:01	AVDTLNAIY	0.7726	0.8228	0.6506	244.55	0.399	17.7	1/982	1/7748
SNV	Breast	LIN9_T267I_9	HLA-B35:01	DAVDTLNAIY	0.9816	0.8074	0.5189	15.47	0.1605	17.7	1/982	1/7748
SNV	Breast	PI16_V284I_1	HLA-C03:03	ITTEVPSIL	0.9989	0.9896	0.185	64.11	0.228	6.4	1/982	1/7748
SNV	Breast	PRPF31_F262Y_3	HLA-C03:03	SGYSSTSVL	0.9963	0.9913	0.6241	32.82	0.1712	39.51	1/982	1/7748
SNV	Breast	TTC28_S2463F_3	HLA-B35:01	LPFGNGYKF	0.9989	0.9104	0.0075	1.08	0.0052	1.86	1/982	1/7748
SNV	Breast	TTC28_S2463F_3	HLA-B35:01	LPFGNGYKFL	0.956	0.9303	0.6944	403.51	0.462	1.86	1/982	1/7748
SNV	Breast	VPS13C_I2109L_2	HLA-B35:01	MLTDPEVVF	0.8779	0.9764	0.2255	152.96	0.351	3.08	1/982	1/7748
SNV	Breast	VPS13C_I2109L_2	HLA-C03:03	MLTDPEVVF	0.9673	0.9932	0.5182	196.72	0.3591	3.08	1/982	1/7748
SNV	Breast	VPS13C_M2108I_1	HLA-B35:01	IITDPEVVF	0.9324	0.9318	0.3098	352.29	0.4449	3.08	1/982	1/7748
SNV	Breast	VPS13C_M2108I_1	HLA-C03:03	IITDPEVVF	0.9946	0.9908	0.3538	326.71	0.4337	3.08	1/982	1/7748
SNV	Breast	EIF2AK2_L536F_9	HLA-B35:01	NTSEILRTF	0.9723	0.6656	0.4562	180.56	0.368	29.3	1/982	1/7748
SNV	Breast	GIMAP8_N242Y_1	HLA-B35:01	YPGTSELTV	0.882	0.8921	0.2156	376.29	0.4532	10.58	1/982	1/7748
SNV	Breast	GIMAP8_N242Y_1	HLA-B53:01	YPGTSELTV	0.7943	0.6586	0.126	69.56	0.1438	10.58	1/982	1/7748
SNV	Breast	GNS_R409Q_2	HLA-B35:01	WQSDVLVEY	0.9702	0.9093	0.2509	234.16	0.3946	80.63	1/982	1/7748
SNV	Breast	KLHL8_R356K_1	HLA-C07:01	KRHVGVISV	0.9917	0.6126	0.0334	130.99	0.1001	7.44	1/982	1/7748
SNV	Breast	UCP2_D8N_5	HLA-A68:02	TNVPPTATV	0.8629	0.6295	0.6776	209.9	0.3234	362.49	1/982	1/7748
SNV	Breast	UCP2_D8N_6	HLA-A68:02	ATNVPPTATV	0.9779	0.64	0.844	33.15	0.1192	362.49	1/982	1/7748
SNV	Breast	UCP2_D8N_3	HLA-B35:01	VPPTATVKF	0.9493	0.798	0.1113	25.43	0.192	362.49	1/982	1/7748
SNV	Breast	ZNF83_I217F_6	HLA-A30:01	KVFHQFSHL	0.99	0.843	0.0234	384.65	0.1462	17.4	1/982	1/7748
SNV	Breast	ATPIF1_A2G_8	HLA-C16:01	TALAARTWL	0.8563	0.9934	1.2036	231.2	0.6175	148.12	3/982	3/7748
SNV	Breast	ATPIF1_A2G_8	HLA-C16:01	TALAARTWL	0.8563	0.9934	1.2036	231.2	0.6175	148.12	3/982	3/7748
SNV	Breast	ATPIF1_A2G_8	HLA-C16:01	TALAARTWL	0.8563	0.9934	1.2036	231.2	0.6175	148.12	3/982	3/7748
SNV	Breast	BDP1_S92L_9	HLA-C03:04	SSRSSSTVL	0.9958	0.9953	0.3251	491.51	0.4999	2.96	1/982	1/7748
SNV	Breast	BDP1_S92L_9	HLA-C16:01	SSRSSSTVL	0.6888	0.9876	0.372	27.35	0.1997	2.96	1/982	1/7748
SNV	Breast	BRWD1_A1184G_4	HLA-C03:04	IAAGFAGPV	0.9926	0.9894	0.4309	446.31	0.4842	8.66	1/982	1/7748
SNV	Breast	BRWD1_A1184G_2	HLA-C16:01	AGFAGPVDL	0.679	0.9919	0.9383	115.3	0.4546	8.66	1/982	1/7748
SNV	Breast	CALML6_N107K_4	HLA-C16:01	KAQKQESEL	0.8979	0.9386	0.2636	294.67	0.6882	1.37	1/982	1/7748
SNV	Breast	CCNB3_K912T_5	HLA-A02:01	TLLKTPLAL	0.9749	0.58	0.4269	17.64	0.2067	18.75	1/982	1/7748
SNV	Breast	CCNB3_K912T_5	HLA-C03:04	TLLKTPLAL	0.8754	0.9901	0.7094	177.07	0.3446	18.75	1/982	1/7748
SNV	Breast	CCNB3_K912T_5	HLA-C16:01	TLLKTPLAL	0.7634	0.9849	1.1141	75.15	0.3668	18.75	1/982	1/7748
SNV	Breast	CDC25C_Q202E_5	HLA-A02:01	SLKDEEAKV	0.9447	0.8149	0.6895	204.46	0.5105	11.67	1/982	1/7748
SNV	Breast	CHD2_K965E_2	HLA-B45:01	NEEELTAIL	0.9073	0.8947	0.211	392.23	0.3396	14.07	1/982	1/7748
SNV	Breast	CNTFR_I175M_3	HLA-C16:01	STMKYKVSI	0.9612	0.9409	0.8351	19.97	0.1698	32.61	1/982	1/7748
SNV	Breast	COL12A1_G2269V_9	HLA-A02:01	GLSPDTDYV	0.976	0.5604	0.132	3.1	0.0683	22.94	1/982	1/7748
SNV	Breast	DNAH17_V3734F_5	HLA-A02:01	FLAQFTFQV	0.9987	0.8228	0	1.32	0.0146	2.08	1/982	1/7748
SNV	Breast	DNAH17_V3734F_5	HLA-A02:01	FLAQFTFQVL	0.9967	0.8269	0.1381	481.86	0.6673	2.08	1/982	1/7748
SNV	Breast	DNAH17_V3734F_4	HLA-C03:04	LAQFTFQVL	0.9997	0.9946	0.0866	201.6	0.3624	2.08	1/982	1/7748
SNV	Breast	DNAH17_V3734F_4	HLA-C16:01	LAQFTFQVL	0.9591	0.9864	0.1709	166.28	0.5351	2.08	1/982	1/7748
SNV	Breast	DPP7_A182E_2	HLA-B45:01	GELAASAPV	0.9985	0.9972	0.0808	68.82	0.1715	117.05	1/982	1/7748
SNV	Breast	EBF1_A404V_2	HLA-A02:01	RVADIAEAL	0.9852	0.6214	0.5579	226.57	0.5271	1.88	1/982	1/7748
SNV	Breast	EBF1_A404V_8	HLA-B45:01	QEIILKRVA	0.9981	0.9758	0.0156	6.65	0.0345	1.88	1/982	1/7748
SNV	Breast	EBF1_A404V_2	HLA-C03:04	RVADIAEAL	0.9988	0.9937	0.0592	2.98	0.0314	1.88	1/982	1/7748
SNV	Breast	EBF1_A404V_2	HLA-C16:01	RVADIAEAL	0.9915	0.985	0.1253	2.39	0.0161	1.88	1/982	1/7748
SNV	Breast	GSTCD_G505E_2	HLA-B45:01	TEMFNIGVA	0.998	0.8031	0.0216	8.31	0.0434	3.13	1/982	1/7748
SNV	Breast	GSTCD_G505E_2	HLA-B45:01	TEMFNIGVAL	0.8825	0.7275	0.2001	100.93	0.2025	3.13	1/982	1/7748
SNV	Breast	GSTCD_G505E_1	HLA-C03:04	EMFNIGVAL	0.9719	0.9579	1.0263	189.92	0.3542	3.13	1/982	1/7748
SNV	Breast	GSTCD_G505E_8	HLA-C16:01	ANMEYFTEM	0.9833	0.9815	1.405	489.45	0.837	3.13	1/982	1/7748
SNV	Breast	IGSF9_R434P_7	HLA-A02:01	YFQEVGPEL	0.7244	0.679	1.4392	465.44	0.6597	40.26	1/982	1/7748
SNV	Breast	IGSF9_R434P_5	HLA-B45:01	QEVGPELLI	0.953	0.8361	0.076	216.87	0.2706	40.26	1/982	1/7748
SNV	Breast	IGSF9_R434P_7	HLA-C03:04	YFQEVGPEL	0.9783	0.9944	0.3192	158.4	0.3294	40.26	1/982	1/7748
SNV	Breast	IGSF9_R434P_7	HLA-C16:01	YFQEVGPEL	0.9689	0.9662	0.5566	90.75	0.4052	40.26	1/982	1/7748
SNV	Breast	KIAA1549_T881A_9	HLA-B45:01	TEVPLNTSA	0.9972	0.8505	0.0001	3.32	0.0143	4.99	1/982	1/7748
SNV	Breast	KIAA1549_T881A_1	HLA-B45:01	AEVSTTSTG	0.8157	0.9188	0.0844	172.85	0.2485	4.99	1/982	1/7748
SNV	Breast	KIAA1549_T881A_1	HLA-B45:01	AEVSTTSTGA	0.9745	0.9114	0.0323	17.35	0.0783	4.99	1/982	1/7748
SNV	Breast	MAMLD1_D43V_5	HLA-B45:01	MEEEVLSFL	0.9398	0.9629	0.1883	412.96	0.3465	1.41	1/982	1/7748
SNV	Breast	MTCL1_L998F_9	HLA-B45:01	MEEEHLYAF	0.9119	0.8729	0.2844	179.76	0.2521	1.15	1/982	1/7748
SNV	Breast	OBSCN_T1290M_9	HLA-C03:04	VAQAQTEVM	0.9993	0.9884	0.0691	83.19	0.2554	3.83	1/982	1/7748
SNV	Breast	OBSCN_T1290M_9	HLA-C16:01	VAQAQTEVM	0.798	0.9894	0.0731	67.16	0.3439	3.83	1/982	1/7748
SNV	Breast	ORC1_V133A_8	HLA-B45:01	AETIIGLA	0.9997	0.6886	0.703	366.22	0.3303	31.67	1/982	1/7748
SNV	Breast	ORC1_V133A_8	HLA-B45:01	AETIIGLARV	0.9966	0.8723	0.4889	173.25	0.2487	31.67	1/982	1/7748
SNV	Breast	ORC1_V133A_4	HLA-C16:01	IGLARVIPL	0.9832	0.9594	1.3014	118.44	0.4602	31.67	1/982	1/7748
SNV	Breast	PLXNB3_F1123L_2	HLA-A02:01	VLFTLDNVQV	0.996	0.7808	0.3811	23.53	0.2312	18.77	1/982	1/7748
SNV	Breast	PLXNB3_F1123L_8	HLA-C03:04	RAHPQRVLF	0.9281	0.9777	0.2437	25.74	0.1566	18.77	1/982	1/7748
SNV	Breast	PLXNB3_F1123L_8	HLA-C16:01	RAHPQRVL	0.9799	0.9753	0.2372	212.14	0.5937	18.77	1/982	1/7748
SNV	Breast	PLXNB3_F1123L_8	HLA-C16:01	RAHPQRVLF	0.9108	0.972	0.0136	2.3	0.0152	18.77	1/982	1/7748
SNV	Breast	POLR2J_R106W_8	HLA-A02:01	SLLEERFWV	0.9955	0.8811	0.0245	1.83	0.0401	213.9	1/982	1/7748
SNV	Breast	POLR2J_R106W_8	HLA-A02:01	SLLEERFWVA	0.9958	0.8765	0.5004	447.96	0.6512	213.9	1/982	1/7748
SNV	Breast	PROCR_L182R_1	HLA-B45:01	REDTCVQYV	0.9891	0.7195	0.268	148.24	0.2354	30.41	1/982	1/7748
SNV	Breast	RNF214_R133W_7	HLA-A02:01	SLHPVTWSL	0.9725	0.7998	0.0123	1.86	0.041	9.74	1/982	1/7748
SNV	Breast	RNF214_R133W_7	HLA-C03:04	SLHPVTWSL	0.9421	0.9981	0.1241	135.36	0.3078	9.74	1/982	1/7748
SNV	Breast	RNF214_R133W_7	HLA-C16:01	SLHPVTWSL	0.9135	0.9935	0.1364	9.46	0.0955	9.74	1/982	1/7748
SNV	Breast	RPUSD3_F243Y_1	HLA-C03:04	YSSQLQVHM	0.9999	0.9682	0.0424	96.38	0.2707	33.37	1/982	1/7748
SNV	Breast	RPUSD3_F243Y_3	HLA-C16:01	TVYSSQLQV	0.8515	0.9609	1.6547	180.81	0.5553	33.37	1/982	1/7748
SNV	Breast	RPUSD3_F243Y_1	HLA-C16:01	YSSQLQVHM	0.9827	0.9378	0.0399	70.41	0.3535	33.37	1/982	1/7748
SNV	Breast	TRIP6_H426Y_8	HLA-C03:04	VALDRSFYI	0.9929	0.9897	0.3713	63.17	0.2264	256.98	1/982	1/7748
SNV	Breast	TRIP6_H426Y_8	HLA-C16:01	VALDRSFYI	0.8987	0.9763	0.4516	15.36	0.1421	256.98	1/982	1/7748
SNV	Breast	WDR13_A181T_2	HLA-C03:04	FTNDDRHRL	0.9976	0.9919	0.1441	18.59	0.1321	16.09	1/982	1/7748
SNV	Breast	WDR13_A181T_2	HLA-C16:01	FTNDDRHRL	0.7609	0.9757	0.3277	18.55	0.1624	16.09	1/982	1/7748
SNV	Breast	YBX3_D310H_3	HLA-B45:01	AEHKENQQA	0.9973	0.9162	0.0047	4.04	0.019	88.69	1/982	1/7748
SNV	Breast	ZNF587_R161C_9	HLA-B45:01	REASFVKKC	0.9534	0.7029	0.2529	201.65	0.2634	4.35	1/982	1/7748
SNV	Breast	ZNF879_S300N_6	HLA-C03:04	KTFKGNSSL	0.9889	0.9731	0.0195	14.57	0.1092	3.08	1/982	1/7748
SNV	Breast	ZNF879_S300N_6	HLA-C16:01	KTFKGNSSL	0.9837	0.9603	0.0116	3.52	0.0309	3.08	1/982	1/7748
SNV	Breast	ADAMTS1_I852M_6	HLA-B35:01	ESFNAMPTF	0.9776	0.809	0.2446	40.47	0.2276	51.43	1/982	1/7748
SNV	Breast	ADAMTS1_I852M_3	HLA-B35:01	NAMPTFSAW	0.9924	0.9123	0.1153	6	0.0982	51.43	1/982	1/7748
SNV	Breast	DLG1_L101I_5	HLA-B35:01	LPSSISPSV	0.9823	0.8684	0.0993	76.46	0.2823	12.07	1/982	1/7748
SNV	Breast	DLG1_L101I_2	HLA-B35:01	SISPSVEKY	0.9457	0.7992	0.3663	114.66	0.3214	12.07	1/982	1/7748
SNV	Breast	GTPBP3_T35N_7	HLA-B35:01	APGSGANIF	0.9674	0.8953	0.2211	29.98	0.2035	7.51	1/982	1/7748
SNV	Breast	HOOK3_A363T_1	HLA-B35:01	TARSQLETY	0.9927	0.8349	0.0824	10.73	0.1342	9.83	1/982	1/7748
SNV	Breast	KDR_A195S_5	HLA-B35:01	MISYSGMVF	0.9805	0.8761	0.1853	124.56	0.3299	19.6	1/982	1/7748
SNV	Breast	BCL9L_A99V_7	HLA-A02:01	SLKNPQVGV	0.9253	0.6088	1.3233	400.21	0.6263	22.44	1/982	1/7748
SNV	Breast	BCL9L_A99V_1	HLA-C03:03	VGVPPFSSL	0.9994	0.987	0.0929	11.94	0.0939	22.44	1/982	1/7748
SNV	Breast	FLAD1_R28T_8	HLA-A02:01	RIWLEKTTV	0.9348	0.7063	0.9966	394.95	0.6234	66.7	1/982	1/7748
SNV	Breast	FLAD1_R28T_6	HLA-A02:01	WLEKTTVFL	0.9	0.6727	0.434	442.12	0.6483	66.7	1/982	1/7748
SNV	Breast	FLAD1_R28T_9	HLA-B27:05	SRIWLEKTTVF	1	0.8573	0.0686	399.44	0.572	66.7	1/982	1/7748
SNV	Breast	TNKS_N1285S_6	HLA-B27:05	GRPSVSGLAY	0.9996	0.6551	0.0902	50.76	0.3349	19.94	1/982	1/7748
SNV	Breast	ANP32B_K62M_1	HLA-B08:01	MLPKLKKL	0.9963	0.8506	1.4465	394.11	0.3017	203.72	1/982	1/7748
SNV	Breast	ANP32B_K62M_1	HLA-B08:01	MLPKLKKLEL	0.9892	0.9549	0.4469	203.6	0.2345	203.72	1/982	1/7748
SNV	Breast	CD19_P376R_10	HLA-A68:01	WAAGLGGTAR	0.9868	0.6905	0.2281	267.37	0.5509	2.38	1/982	1/7748
SNV	Breast	FAM198A_M268R_9	HLA-A68:01	WLTDHDVQR	0.8557	0.6818	0.4733	142.64	0.4377	4.33	1/982	1/7748
SNV	Breast	HS3ST1_F89Y_2	HLA-C07:01	HYFDWEEHY	0.7714	0.757	0.2249	350.97	0.1497	1.42	1/982	1/7748
SNV	Breast	MYO5A_E1030K_5	HLA-B08:01	NLKEKNTL	0.9998	0.6851	0.026	1.99	0.0059	8.97	1/982	1/7748
SNV	Breast	MYO5A_E1030K_5	HLA-B08:01	NLKEKNTLL	0.9974	0.6949	0.0035	2.42	0.0075	8.97	1/982	1/7748
SNV	Breast	PRR5_V178L_8	HLA-C07:01	ARVPPAILQM	0.9998	0.5173	0.039	345.75	0.1486	9.68	1/982	1/7748
SNV	Breast	PRR5_V178L_8	HLA-C06:02	ARVPPAILQM	0.942	0.9912	0.1027	293.8	0.156	9.68	1/982	1/7748
SNV	Breast	RIN3_Q158K_6	HLA-B08:01	TLRLPKAIL	0.9835	0.5052	0.079	221.01	0.2416	8.14	1/982	1/7748
SNV	Breast	SLC34A2_T46I_4	HLA-B08:01	APVIKIELL	0.8492	0.5295	0.1208	316.47	0.278	1.34	1/982	1/7748
SNV	Breast	CHD6_P1604R_5	HLA-B15:01	IMNDRQLSF	0.9995	0.8541	0.0098	2.1	0.0141	38.48	1/982	1/7748
SNV	Breast	CHD6_P1604R_1	HLA-B15:01	RQLSFLDAY	0.9991	0.7586	0.005	5.08	0.052	38.48	1/982	1/7748
SNV	Breast	CHD6_P1604R_6	HLA-B15:01	YIMNDRQLSF	0.9999	0.8059	0.7699	83.5	0.2699	38.48	1/982	1/7748
SNV	Breast	CHD6_P1604R_5	HLA-C03:04	IMNDRQLSF	0.9906	0.9842	0.5222	193.65	0.3569	38.48	1/982	1/7748
SNV	Breast	COG1_D704N_3	HLA-A02:01	LLNDAGSVL	0.9628	0.5811	0.7385	254.98	0.5463	48.56	1/982	1/7748
SNV	Breast	COG1_D704N_3	HLA-B15:01	LLNDAGSVL	0.9752	0.8849	0.5766	178.48	0.3565	48.56	1/982	1/7748
SNV	Breast	COG1_D704N_3	HLA-C03:04	LLNDAGSVL	0.9873	0.9833	0.2614	15.89	0.1178	48.56	1/982	1/7748
SNV	Breast	NEURL4_P666L_7	HLA-A02:01	AAWNVPLGV	0.9215	0.7065	0.8226	230.11	0.5297	9.15	1/982	1/7748
SNV	Breast	NEURL4_P666L_3	HLA-B51:01	VPLGVYAV	0.9996	0.7885	0.1236	8.43	0.0598	9.15	1/982	1/7748
SNV	Breast	NEURL4_P666L_3	HLA-B51:01	VPLGVYAVV	0.9935	0.7915	0.007	2.45	0.0139	9.15	1/982	1/7748
SNV	Breast	PHKA2_V348F_10	HLA-B15:01	GVFSGDAVQF	0.9994	0.8392	0.3244	189.43	0.3642	23.83	1/982	1/7748
SNV	Breast	POLR2A_T1222A_3	HLA-B15:01	HMADRKLTM	0.984	0.8526	0.1781	32.33	0.1763	105.3	1/982	1/7748
SNV	Breast	POLR2A_T1222A_3	HLA-C03:04	HMADRKLTM	0.9925	0.981	0.2163	53.82	0.2095	105.3	1/982	1/7748
SNV	Breast	ALOX5AP_G87A_5	HLA-C03:03	AAFAALMYL	0.9981	0.9867	0.0466	4.46	0.0443	8	1/982	1/7748
SNV	Breast	B4GALT4_V124I_6	HLA-C03:03	KALQRIAIL	0.999	0.9911	0.2318	33.35	0.1722	5.59	1/982	1/7748
SNV	Breast	BCHE_W585R_5	HLA-B15:01	YMMDRKNQF	0.9946	0.9322	0.0135	4.09	0.0412	5.02	1/982	1/7748
SNV	Breast	BCHE_W585R_5	HLA-C03:03	YMMDRKNQF	0.9821	0.9881	0.5427	48.92	0.1996	5.02	1/982	1/7748
SNV	Breast	CAMSAP1_M596I_6	HLA-C05:01	FLEPLIPAV	0.9998	0.9968	0.1154	2.56	0.0343	8.63	1/982	1/7748
SNV	Breast	CAMSAP1_M596I_6	HLA-C05:01	FLEPLIPAVL	0.9999	0.9908	0.1623	46.69	0.1662	8.63	1/982	1/7748
SNV	Breast	CAPNS1_A238D_4	HLA-B15:01	RLDDMFRAF	0.9854	0.8549	0.3244	20.55	0.1431	132.99	1/982	1/7748
SNV	Breast	CAPNS1_A238D_4	HLA-C03:03	RLDDMFRAF	0.7742	0.984	0.6165	388.81	0.4619	132.99	1/982	1/7748
SNV	Breast	CAPNS1_A238D_4	HLA-C05:01	RLDDMFRAF	0.9992	0.9613	0.061	2.88	0.0383	132.99	1/982	1/7748
SNV	Breast	CORO1C_A215V_2	HLA-C03:03	KVHEGARPM	0.9056	0.967	0.099	120.62	0.294	21.41	1/982	1/7748
SNV	Breast	DCAF4_Q133H_6	HLA-B15:01	MLRKSHLGF	0.9946	0.825	0.0139	12.52	0.1102	4.11	1/982	1/7748
SNV	Breast	DRAM1_T137R_1	HLA-B15:01	RLLQSIISY	0.998	0.8625	0.037	2.36	0.0194	24.78	1/982	1/7748
SNV	Breast	DUSP7_V277G_5	HLA-C03:03	YILNGTPNL	0.9973	0.9883	0.245	4.81	0.048	6.44	1/982	1/7748
SNV	Breast	DUSP7_V277G_5	HLA-C05:01	YILNGTPNL	0.8571	0.9461	1.0821	39.59	0.1562	6.44	1/982	1/7748
SNV	Breast	DYSF_L277R_8	HLA-C05:01	LFDSPGERF	0.9992	0.9557	0.2495	94.12	0.216	10.12	1/982	1/7748
SNV	Breast	DYSF_L277R_1	HLA-C05:01	RFDEPIFITV	0.9998	0.9503	0.3564	360.26	0.362	10.12	1/982	1/7748
SNV	Breast	FLNC_C2101F_1	HLA-C03:03	FPTEPGTYI	0.9532	0.9914	0.6816	251.49	0.3927	1.49	1/982	1/7748
SNV	Breast	IFNLR1_P342H_3	HLA-B15:01	FQHYIEPPSF	0.9999	0.9487	0.5249	488.7	0.5159	5.58	1/982	1/7748
SNV	Breast	IMPDH2_N428S_6	HLA-B15:01	HLSSQSRYF	0.9846	0.8499	0.2215	34.01	0.1807	92.49	1/982	1/7748
SNV	Breast	ITGAX_N385K_1	HLA-B15:01	KMSPTFINM	0.9977	0.9044	0.0933	95.66	0.2824	2.41	1/982	1/7748
SNV	Breast	ITGAX_N385K_8	HLA-C03:03	GAFLYPPKM	0.9939	0.9902	0.3951	88.58	0.2619	2.41	1/982	1/7748
SNV	Breast	LDB2_L187M_5	HLA-C05:01	VLDQMSKNI	0.9998	0.9429	0.061	27.02	0.1371	2.63	1/982	1/7748
SNV	Breast	MAP3K8_T94S_5	HLA-B15:01	HISNSAKHF	0.9898	0.6783	0.404	261.55	0.4083	7.27	1/982	1/7748
SNV	Breast	MTMR4_C577Y_10	HLA-B15:01	AVYLPASSPY	0.9996	0.9562	0.2722	34.89	0.183	26	1/982	1/7748
SNV	Breast	MTMR4_C577Y_7	HLA-C03:03	LPASSPYTL	0.9934	0.9857	1.205	165.71	0.3356	26	1/982	1/7748
SNV	Breast	MTOR_C1999F_3	HLA-C03:03	NMFEHSNTL	0.9927	0.9915	0.0654	12.63	0.0971	16.14	1/982	1/7748
SNV	Breast	PHLDB1_P379S_4	HLA-B15:01	TSISGSPKF	0.9835	0.9226	0.4848	345.83	0.4557	7.19	1/982	1/7748
SNV	Breast	PPARD_D375N_3	HLA-B15:01	IQNTILRAL	0.9981	0.8162	0.3408	273.93	0.4161	13.99	1/982	1/7748
SNV	Breast	PPARD_D375N_7	HLA-C05:01	RVEAIQNTI	0.9997	0.9535	0.6879	105.78	0.2255	13.99	1/982	1/7748
SNV	Breast	SALL2_L490P_7	HLA-C03:03	LSATESPTL	0.999	0.9943	0.1724	112.91	0.2871	4.17	1/982	1/7748
SNV	Breast	SALL2_L490P_6	HLA-C03:03	SATESPTLL	0.9993	0.9935	0.0266	4.6	0.0458	4.17	1/982	1/7748
SNV	Breast	SALL2_L490P_6	HLA-C05:01	SATESPTLL	0.9993	0.9398	0.1271	324.34	0.3487	4.17	1/982	1/7748
SNV	Breast	SEMA6B_T195P_4	HLA-C03:03	FTAPVTDFL	0.999	0.9918	0.0301	22.18	0.1468	3.19	1/982	1/7748
SNV	Breast	SEMA6B_T195P_4	HLA-C05:01	FTAPVTDFL	0.9971	0.9469	0.3629	2.56	0.0343	3.19	1/982	1/7748
SNV	Breast	SRRT_M123L_9	HLA-C03:03	WGHPDVHIL	0.9966	0.9803	0.4514	373.16	0.4553	50.28	1/982	1/7748
SNV	Breast	TBC1D25_P549A_7	HLA-C05:01	LLNSPDALL	0.9973	0.8221	0.6152	34.39	0.1482	7.65	1/982	1/7748
SNV	Breast	TNC_R1843H_1	HLA-B15:01	HTVSGNTVEY	0.9982	0.9499	0.4906	67.76	0.2506	45.38	1/982	1/7748
SNV	Breast	TNC_R1843H_7	HLA-C03:03	KVPEITHTV	0.8386	0.9682	0.2412	129.15	0.3014	45.38	1/982	1/7748
SNV	Breast	TNC_R1843H_7	HLA-C05:01	KVPEITHTV	0.9933	0.868	0.4	39.22	0.1556	45.38	1/982	1/7748
SNV	Breast	TP53_T155P_7	HLA-C05:01	STPPPGPRV	0.9873	0.9683	0.2896	148.05	0.254	62.31	1/982	1/7748
SNV	Breast	VCAN_N3147T_8	HLA-B15:01	ATCVDGFTTF	0.993	0.9401	1.0826	25.62	0.1592	26.18	1/982	1/7748
SNV	Breast	ZNF135_L369F_9	HLA-B15:01	KAFSHSSSF	0.9991	0.778	0.0075	2.93	0.0263	3.93	1/982	1/7748
SNV	Breast	ZNF135_L369F_9	HLA-C03:03	KAFSHSSSF	0.9702	0.9812	0.0146	3.76	0.0378	3.93	1/982	1/7748
SNV	Breast	ZZEF1_T1928A_2	HLA-C03:03	QARSSATTL	0.9914	0.9541	0.2013	96.31	0.2706	7.25	1/982	1/7748
SNV	Breast	KBTBD4_D123N_1	HLA-B08:01	NMYQLTSL	0.8928	0.8901	1.0626	265.94	0.2594	14.19	1/982	1/7748
SNV	Breast	SMG8_F849S_7	HLA-C07:01	ARAFVGSEY	0.9925	0.6506	0.112	136.5	0.1016	14.13	1/982	1/7748
SNV	Breast	SMG8_F849S_7	HLA-C07:02	ARAFVGSEY	0.8079	0.9453	0.106	86.36	0.1799	14.13	1/982	1/7748
SNV	Breast	ADAMTS2_D852G_6	HLA-B35:01	NVLEEGSVVY	0.9606	0.8549	0.7678	155.74	0.3528	15.22	1/982	1/7748
SNV	Breast	AGO1_Y747S_8	HLA-B35:01	HPFEFDFSL	0.9968	0.9108	0.0446	1.65	0.0277	10.89	1/982	1/7748
SNV	Breast	BCAP31_E217V_3	HLA-B35:01	QSVGLTKEY	0.948	0.9502	0.2006	424.61	0.4684	434.54	1/982	1/7748
SNV	Breast	BCDIN3D_R140K_5	HLA-A02:01	FMNQKTRKV	0.9803	0.6729	0.2931	444.89	0.6497	6.52	1/982	1/7748
SNV	Breast	C14orf169_D381N_1	HLA-A02:01	NLGEPVLQTV	0.9824	0.7253	0.7385	270.44	0.5558	48.15	1/982	1/7748
SNV	Breast	COX7A2_L18F_10	HLA-B35:01	VPVPAWPFSF	0.9954	0.8225	0.132	11.99	0.1434	255	1/982	1/7748
SNV	Breast	COX7A2_L18F_8	HLA-B07:02	VPAWPFSF	0.994	0.6404	0.9545	316.88	0.3618	255	1/982	1/7748
SNV	Breast	COX7A2_L18F_8	HLA-B07:02	VPAWPFSFV	0.9774	0.5855	0.2906	163.84	0.3037	255	1/982	1/7748
SNV	Breast	COX7A2_L18F_10	HLA-B07:02	VPVPAWPFSF	0.989	0.6656	0.3031	229.19	0.3332	255	1/982	1/7748
SNV	Breast	DIP2C_R1453Q_9	HLA-B35:01	EAMELRGMQY	0.9945	0.6886	0.749	35.4	0.2169	5.87	1/982	1/7748
SNV	Breast	KBTBD4_S122A_6	HLA-B35:01	EIYEVADMY	0.9294	0.8666	0.7901	13.46	0.1522	15.9	1/982	1/7748
SNV	Breast	LRP12_T683M_9	HLA-B35:01	LPQKVPPTM	0.9953	0.8921	0.0569	1.58	0.0253	2.05	1/982	1/7748
SNV	Breast	LRP12_T683M_11	HLA-B07:02	APLPQKVPPTM	0.9999	0.7261	0.0996	56.78	0.2166	2.05	1/982	1/7748
SNV	Breast	MOB1B_H185Y_1	HLA-C07:02	YFIFFVQEF	0.7337	0.902	0.1884	73.51	0.1659	19.82	1/982	1/7748
SNV	Breast	PSAP_H517Y_9	HLA-B35:01	AAQCNAVEY	0.9738	0.8726	0.1339	130.36	0.3346	631.16	1/982	1/7748
SNV	Breast	PSAP_H517Y_10	HLA-B35:01	TAAQCNAVEY	0.9854	0.864	0.286	111.52	0.3186	631.16	1/982	1/7748
SNV	Breast	SEMA4C_P119H_2	HLA-C07:02	QHYNASHLY	0.8208	0.8424	0.5283	96.68	0.1909	28.48	1/982	1/7748
SNV	Breast	SGSM3_R655H_8	HLA-A02:01	AQMDVKLHSL	0.9691	0.6827	0.5933	343.55	0.5946	35.7	1/982	3/7748
SNV	Breast	TNS1_M956L_9	HLA-C07:02	SYKEAFEEL	0.574	0.9887	0.0606	17.91	0.0728	17.89	1/982	1/7748
SNV	Breast	YIPF3_H240R_5	HLA-C07:02	TYNIRLHAL	0.7704	0.8341	0.122	17.61	0.0721	200.23	1/982	1/7748
SNV	Breast	YIPF3_H240R_2	HLA-C07:02	IRLHALFYL	0.9832	0.8411	0.0756	56.44	0.1437	200.23	1/982	1/7748
SNV	Breast	ZBTB39_H465Y_8	HLA-A02:01	KVLAKDFYV	0.9912	0.6287	0.1121	10.06	0.1592	8.98	1/982	1/7748
SNV	Breast	ZBTB39_H465Y_7	HLA-A02:01	VLAKDFYVV	0.998	0.8228	0.0158	2.93	0.0639	8.98	1/982	1/7748
SNV	Breast	ERC1_P1047S_3	HLA-C03:04	LTSPASYNL	0.9989	0.985	0.5621	387.34	0.4613	7.19	1/982	1/7748
SNV	Breast	MMD_P41S_1	HLA-C03:04	SAIVGSAL	0.9999	0.9863	0.1739	441.38	0.4824	5.61	1/982	1/7748
SNV	Breast	MMD_P41S_7	HLA-C03:04	HAFLIVSAI	0.9951	0.9644	0.1218	30.82	0.1675	5.61	1/982	1/7748
SNV	Breast	MMD_P41S_2	HLA-C03:04	VSAIVGSAL	0.9991	0.982	0.1061	11.23	0.0903	5.61	1/982	1/7748
SNV	Breast	MMD_P41S_1	HLA-C03:04	SAIVGSALL	0.9997	0.9824	0.0278	3.72	0.0376	5.61	1/982	1/7748
SNV	Breast	RPL5_A97G_1	HLA-C03:04	GAYCTGLLL	0.9863	0.9927	0.2709	365.19	0.4518	374.2	1/982	1/7748
SNV	Breast	AGO3_R20I_6	HLA-B15:01	LMVPRIPGY	0.998	0.7867	0.049	4.86	0.0504	6.19	1/982	1/7748
SNV	Breast	ARHGAP11A_N987K_4	HLA-A03:01	GINKRVLRR	0.8788	0.5305	0.5476	69.07	0.2471	11.04	1/982	1/7748
SNV	Breast	BCAT2_R219Q_2	HLA-B15:01	IQAWVGGVGNY	1	0.9083	0.4444	258.9	0.4066	18.84	1/982	1/7748
SNV	Breast	BEND7_G299A_4	HLA-B15:01	NIVAAIKVF	0.9813	0.8082	0.4806	323.66	0.4445	13.85	1/982	1/7748
SNV	Breast	COX4I2_K80R_1	HLA-B15:01	RVALYRLQF	0.9467	0.825	0.257	489.91	0.5163	3.7	1/982	1/7748
SNV	Breast	COX4I2_K80R_6	HLA-C03:04	LTHAERVAL	0.9985	0.9531	0.1854	63.87	0.2276	3.7	1/982	1/7748
SNV	Breast	DVL1_Y542F_2	HLA-A24:02	QFPGPPPCF	0.9885	0.7246	0.2439	5.16	0.1493	53.11	1/982	1/7748
SNV	Breast	DVL1_Y542F_3	HLA-A24:02	YQFPGPPPCF	0.9676	0.895	0.4724	12.52	0.2348	53.11	1/982	1/7748
SNV	Breast	DVL1_Y542F_3	HLA-B15:01	YQFPGPPPCF	0.9992	0.9881	0.1619	21.82	0.1475	53.11	1/982	1/7748
SNV	Breast	ECE2_T175M_3	HLA-B27:05	SRMQLELVL	0.9999	0.8275	0.1113	1.43	0.0302	10.68	1/982	1/7748
SNV	Breast	ELP5_L126P_6	HLA-C03:04	IALDSPSWL	0.9988	0.9882	0.1696	12.2	0.0951	26.17	1/982	1/7748
SNV	Breast	GIMAP8_S307L_9	HLA-C03:04	SIIDAPDIL	0.9988	0.984	0.3145	44.99	0.1935	3.1	1/982	1/7748
SNV	Breast	GIMAP8_S307L_9	HLA-C02:02	SIIDAPDIL	0.5623	0.9401	0.4955	281.91	0.3294	3.1	1/982	1/7748
SNV	Breast	GTPBP1_M267I_5	HLA-C03:04	TVFGITGHL	0.9974	0.9962	0.2805	153.52	0.3251	41.14	1/982	1/7748
SNV	Breast	GTPBP1_M267I_5	HLA-C02:02	TVFGITGHL	0.7695	0.9935	0.0981	186.79	0.255	41.14	1/982	1/7748
SNV	Breast	HDAC2_H168Y_9	HLA-B15:01	AILELLKYY	0.9908	0.8756	0.5559	254.5	0.4036	26.44	1/982	1/7748
SNV	Breast	KCNQ5_A640T_5	HLA-B15:01	ASALTLASF	0.9963	0.9751	0.0781	69.47	0.2529	1.02	1/982	1/7748
SNV	Breast	KLHL24_M525V_3	HLA-A24:02	YWVHVQNTF	0.9978	0.5774	0.013	1.61	0.0341	38.73	1/982	1/7748
SNV	Breast	KLHL24_M525V_4	HLA-A24:02	DYWVHVQNTF	0.9978	0.7268	0.203	7.53	0.1899	38.73	1/982	1/7748
SNV	Breast	LPGAT1_P288L_5	HLA-B27:05	YRIFLIKDV	0.9993	0.8218	0.957	51.17	0.3358	48.8	1/982	2/7748
SNV	Breast	NDRG4_L275V_2	HLA-B15:01	KVTEAFKYF	0.9641	0.8763	0.4848	147.63	0.3317	10.14	1/982	1/7748
SNV	Breast	NSFL1C_P161L_3	HLA-B15:01	AALEEESAY	0.9912	0.939	0.2545	50.16	0.2182	80.37	1/982	1/7748
SNV	Breast	PRDM1_G214A_5	HLA-C03:04	YPYPAELTM	0.9966	0.9867	0.1854	3	0.0316	7.8	1/982	1/7748
SNV	Breast	PRDM1_G214A_5	HLA-C02:02	YPYPAELTM	0.6943	0.9656	0.539	249.34	0.3027	7.8	1/982	1/7748
SNV	Breast	SIM1_Q152K_1	HLA-B15:01	KEYEIERSF	0.8442	0.9514	0.505	105.75	0.2916	7.17	1/982	1/7748
SNV	Breast	TAF6_T372I_1	HLA-B27:05	IRYGSIAGL	0.9996	0.7113	0.1191	1.33	0.0257	38	1/982	1/7748
SNV	Breast	TIA1_H107Y_9	HLA-B15:01	TQRSQDHFY	0.9994	0.7354	0.0902	4.37	0.0448	42.85	1/982	1/7748
SNV	Breast	TIA1_H107Y_7	HLA-B15:01	RSQDHFYVF	0.9976	0.9324	0.1375	23.91	0.1542	42.85	1/982	1/7748
SNV	Breast	TIA1_H107Y_8	HLA-B27:05	QRSQDHFYVF	1	0.7126	0.0855	133.78	0.4399	42.85	1/982	1/7748
SNV	Breast	TIA1_H107Y_7	HLA-C02:02	RSQDHFYVF	0.771	0.9779	0.1299	143.8	0.2126	42.85	1/982	1/7748
SNV	Breast	TP53_I195T_1	HLA-B27:05	TRVEGNLRV	0.999	0.8889	0.3018	39.8	0.309	101.64	1/982	1/7748
SNV	Breast	TP53_I195T_1	HLA-B27:05	TRVEGNLRVEY	0.9999	0.7689	0.5951	223.05	0.4967	101.64	1/982	1/7748
SNV	Breast	TRO_I325K_3	HLA-B15:01	TQKVTNQAL	0.9975	0.6786	0.3408	423.48	0.4901	5.26	1/982	1/7748
SNV	Breast	TSPAN31_D121G_3	HLA-B27:05	TRGELERSF	0.9979	0.8443	0.4655	314.05	0.5407	10.71	1/982	1/7748
SNV	Breast	UBQLN4_S408T_8	HLA-C03:04	ISAPYMRTM	0.9996	0.9887	0.1061	8.58	0.0728	136.62	1/982	1/7748
SNV	Breast	UBQLN4_S408T_8	HLA-C02:02	ISAPYMRTM	0.7139	0.8916	0.0424	35.22	0.0785	136.62	1/982	1/7748
SNV	Breast	CD163L1_L976M_2	HLA-A02:01	LMDNCQMTV	0.997	0.624	0.1777	124.36	0.426	3.5	1/982	1/7748
SNV	Breast	CD163L1_L976M_3	HLA-A02:01	SLMDNCQMTV	0.9991	0.7348	0.0653	2.89	0.063	3.5	1/982	1/7748
SNV	Breast	CD163L1_L976M_3	HLA-A02:01	SLMDNCQMTVL	0.9942	0.7781	0.6655	475.85	0.6645	3.5	1/982	1/7748
SNV	Breast	CD163L1_L976M_2	HLA-C05:01	LMDNCQMTV	0.9999	0.9725	0.032	16.66	0.1147	3.5	1/982	1/7748
SNV	Breast	DZIP3_A914S_7	HLA-C05:01	AVDSWNSIV	0.9998	0.9519	0.1043	8.84	0.0808	1.65	1/982	1/7748
SNV	Breast	EIF2S1_C98S_5	HLA-B35:01	EAIKSEDKF	0.9677	0.8288	0.3947	35.71	0.2176	7.91	1/982	1/7748
SNV	Breast	HEATR1_E2115D_3	HLA-A02:01	LMDDECEEV	0.9875	0.6381	0.3574	34.45	0.2655	2.81	1/982	1/7748
SNV	Breast	HEATR1_E2115D_3	HLA-C05:01	LMDDECEEV	0.9995	0.9452	0.038	96.99	0.2185	2.81	1/982	1/7748
SNV	Breast	YLPM1_E1906Q_6	HLA-B35:01	YEAEMQETY	0.8003	0.8458	0.7024	211.46	0.3841	3.45	1/982	1/7748
SNV	Breast	ARFGAP1_A109D_1	HLA-B08:01	DLFRDKVVAL	0.9812	0.707	1.2486	29.78	0.0821	13.46	1/982	1/7748
SNV	Breast	ARID4B_K938Q_4	HLA-B08:01	WPKQTLKEL	0.9812	0.5181	0.138	200.35	0.2331	10.53	1/982	1/7748
SNV	Breast	ATP6V0A1_E156K_5	HLA-C15:02	SSLLKPSEM	0.9963	0.8956	0.3553	376.47	0.6928	7.58	1/982	1/7748
SNV	Breast	CELSR3_V1277M_7	HLA-C15:02	LANSLTMRL	0.9987	0.7503	0.1273	6.77	0.0583	1.12	1/982	1/7748
SNV	Breast	CELSR3_V1277M_7	HLA-C03:04	LANSLTMRL	0.9998	0.9781	0.1669	11.4	0.0912	1.12	1/982	1/7748
SNV	Breast	FAM21C_S609T_2	HLA-B08:01	LTKKKASAL	0.9972	0.5308	0.006	3.94	0.0168	6.37	1/982	1/7748
SNV	Breast	FAM21C_S609T_3	HLA-B08:01	ELTKKKASAL	0.9899	0.727	0.6683	95.42	0.1651	6.37	1/982	1/7748
SNV	Breast	IGKV3D-20_P61T_2	HLA-C15:02	KTGLAPRLL	0.9867	0.8447	0.3296	262.31	0.5823	5.19	1/982	1/7748
SNV	Breast	MMP13_T50R_7	HLA-C15:02	RSYYHPRNL	0.9981	0.8635	0.3428	4.23	0.0325	2.58	1/982	1/7748
SNV	Breast	MMP13_T50R_7	HLA-C03:04	RSYYHPRNL	0.9828	0.9903	1.0724	143.76	0.3161	2.58	1/982	1/7748
SNV	Breast	PLEC_E2845D_5	HLA-C15:02	KATNDKLSV	0.9993	0.7632	0.4492	389.08	0.7031	53.42	1/982	1/7748
SNV	Breast	RASA3_F557L_8	HLA-C15:02	YADAVKNLL	0.9986	0.9062	0.0231	2.89	0.0136	5.26	1/982	1/7748
SNV	Breast	RASA3_F557L_8	HLA-C03:04	YADAVKNLL	0.9998	0.9855	0.0362	3.73	0.0377	5.26	1/982	1/7748
SNV	Breast	RUNDC3B_V31L_3	HLA-B08:01	AALERRNL	0.9941	0.6483	0.4793	33.47	0.089	1.21	1/982	1/7748
SNV	Breast	RUNDC3B_V31L_3	HLA-B08:01	AALERRNLI	0.9497	0.6886	0.1523	226.61	0.2437	1.21	1/982	1/7748
SNV	Breast	RUNDC3B_V31L_3	HLA-C15:02	AALERRNLI	0.9985	0.9418	0.528	97.54	0.3896	1.21	1/982	1/7748
SNV	Breast	SDK1_T1994M_9	HLA-C15:02	YGEPSNPSM	0.9862	0.9639	0.3009	451.4	0.7449	2.45	1/982	1/7748
SNV	Breast	SDK1_T1994M_9	HLA-C03:04	YGEPSNPSM	0.9988	0.9955	0.1638	167.89	0.3373	2.45	1/982	1/7748
SNV	Breast	SLC23A3_T257S_4	HLA-C15:02	STHSPLPVF	0.9381	0.9216	0.3553	92.59	0.3801	1.72	1/982	1/7748
SNV	Breast	SLC23A3_T257S_2	HLA-C15:02	HSPLPVFRL	0.9933	0.8749	0.3683	215.2	0.5379	1.72	1/982	1/7748
SNV	Breast	SLC23A3_T257S_4	HLA-C03:04	STHSPLPVF	0.98	0.9954	0.1739	142.64	0.315	1.72	1/982	1/7748
SNV	Breast	SSPO_H1079P_2	HLA-B08:01	VPMLRGRAV	0.995	0.9085	0.0377	5.82	0.0254	1.58	1/982	1/7748
SNV	Breast	SSPO_H1079P_2	HLA-B51:01	VPMLRGRAV	0.8767	0.6362	0.2382	10.32	0.0728	1.58	1/982	1/7748
SNV	Breast	TTF2_G544S_7	HLA-C15:02	ITSEAISQL	0.9996	0.9241	0.031	4.91	0.0413	3.89	1/982	1/7748
SNV	Breast	TTF2_G544S_7	HLA-C03:04	ITSEAISQL	0.9997	0.9858	0.0691	24.91	0.1546	3.89	1/982	1/7748
SNV	Breast	USPL1_A224D_5	HLA-A23:01	SFPQDLCVQW	0.9789	0.652	0.341	68.35	0.3851	3.38	1/982	1/7748
SNV	Breast	ZNF79_V489L_4	HLA-B08:01	SAFLRHQRL	0.9975	0.609	0.0655	3.32	0.0117	2.09	1/982	1/7748
SNV	Breast	ZNF79_V489L_4	HLA-C15:02	SAFLRHQRL	0.9956	0.7918	0.3683	77.76	0.3483	2.09	1/982	1/7748
SNV	Breast	ZNF79_V489L_4	HLA-C03:04	SAFLRHQRL	0.9965	0.982	0.3413	72.01	0.2402	2.09	1/982	1/7748
SNV	Breast	ASXL2_A664V_9	HLA-A02:01	TLADIKAKV	0.9974	0.8284	0.1706	2.93	0.064	3.35	1/982	1/7748
SNV	Breast	FANCD2_L972F_5	HLA-A02:01	LLEDFSQKL	0.9913	0.5694	0.4269	45.06	0.2917	2.42	1/982	1/7748
SNV	Breast	FANCD2_L972F_6	HLA-A02:01	FLLEDFSQKL	0.9981	0.5163	0.2976	3.56	0.0756	2.42	1/982	1/7748
SNV	Breast	XPO5_L638P_7	HLA-A02:01	QLLSNEPLL	0.9805	0.6555	0.5845	39.91	0.2798	2.98	1/982	1/7748
SNV	Breast	BAZ2A_V1827L_10	HLA-A02:01	FLEPVNPRLL	0.9677	0.6014	0.8915	18.65	0.2115	20.61	1/982	1/7748
SNV	Breast	CAMKK1_D335A_3	HLA-A02:01	ALAVWATGV	0.9895	0.7942	0.0571	23.25	0.2302	1.73	1/982	1/7748
SNV	Breast	CAMKK1_D335A_1	HLA-A02:01	AVWATGVTL	0.8433	0.7159	0.8398	137.04	0.4426	1.73	1/982	1/7748
SNV	Breast	CAMKK1_D335A_1	HLA-B15:01	AVWATGVTLY	0.9979	0.9633	0.423	77.87	0.2634	1.73	1/982	1/7748
SNV	Breast	CAMKK1_D335A_1	HLA-C03:03	AVWATGVTL	0.9973	0.9957	0.1195	11.28	0.0906	1.73	1/982	1/7748
SNV	Breast	DPY19L3_R605K_3	HLA-B15:01	SLKERTRAVY	0.9997	0.7236	0.5559	30.97	0.173	6.74	1/982	1/7748
SNV	Breast	OBSCN_V4711A_7	HLA-C03:03	AAATFQAAL	0.9997	0.9931	0.0153	3.63	0.0369	2.08	1/982	1/7748
SNV	Breast	OBSCN_V4711A_2	HLA-C03:03	QAALSPASV	0.9936	0.9875	0.384	472.91	0.4936	2.08	1/982	1/7748
SNV	Breast	PEX2_R169H_1	HLA-B15:01	HLLGIHSVF	0.9958	0.9472	0.0979	26.16	0.1607	18.64	1/982	1/7748
SNV	Breast	PEX2_R169H_7	HLA-C03:03	FATLTEHLL	0.9997	0.992	0.0425	62.02	0.2245	18.64	1/982	1/7748
SNV	Breast	PRKCE_S135L_9	HLA-C03:03	VIIDLSGSL	0.9992	0.9929	0.15	31.45	0.1687	3.43	1/982	1/7748
SNV	Breast	SMCR8_A741T_7	HLA-A02:01	VLGEDETIV	0.9607	0.7824	0.6655	63.39	0.3329	8.47	1/982	1/7748
SNV	Breast	SNAI1_R220C_6	HLA-C03:03	RAFADCSNL	0.9959	0.9939	0.3014	198.02	0.36	2.17	1/982	1/7748
SNV	Breast	TFAP2A_V159A_9	HLA-A02:01	SLPHAIEEA	0.9492	0.8057	0.534	212.83	0.517	21.21	1/982	1/7748
SNV	Breast	TFAP2A_V159A_6	HLA-C03:03	HAIEEAPHV	0.9985	0.994	0.0964	79.71	0.2509	21.21	1/982	1/7748
SNV	Breast	FHOD3_R1397Q_6	HLA-B14:02	NRKSLQRTL	0.9951	0.7197	0.0399	148.68	0.0435	1.22	1/982	1/7748
SNV	Breast	ALOX15_I316M_7	HLA-A02:01	KLLPMVMQL	0.9935	0.7587	0.1186	1.39	0.0168	1.82	1/982	1/7748
SNV	Breast	ALOX15_I316M_5	HLA-B35:03	LPMVMQLQL	0.9939	0.9038	0.0241	52.58	0.0788	1.82	1/982	1/7748
SNV	Breast	ARMCX2_M541K_4	HLA-B35:03	NPDKLKKLL	0.6118	0.835	0.1605	467.24	0.1729	4.14	1/982	1/7748
SNV	Breast	CDH2_P645R_8	HLA-C04:01	AFDLPLSRV	0.9987	0.9826	0.0289	15.49	0.032	4.36	1/982	1/7748
SNV	Breast	CHN1_D119N_7	HLA-C04:01	IHDLVTNGL	0.9976	0.7123	0.1394	486.04	0.1528	9.94	1/982	1/7748
SNV	Breast	MED24_A246D_6	HLA-B35:03	FPTVHDVIL	0.9928	0.7283	0.0044	1.5	0.0042	9.07	1/982	1/7748
SNV	Breast	MED24_A246D_6	HLA-B35:03	FPTVHDVILL	0.9907	0.6956	0.0927	229.26	0.1384	9.07	1/982	1/7748
SNV	Breast	ABCA13_I2430T_8	HLA-B15:16	MARLLDTTL	0.8662	0.949	0.3441	194.6	0.6868	8.41	1/982	1/7748
SNV	Breast	ABCA13_I2430T_8	HLA-C16:01	MARLLDTTL	0.8163	0.9758	0.1956	13.6	0.127	8.41	1/982	1/7748
SNV	Breast	ACSF3_P543R_2	HLA-C07:01	ARYAVPSEL	0.9988	0.606	0.0077	4.65	0.0091	4.14	1/982	1/7748
SNV	Breast	ADAMTS16_G832A_3	HLA-B57:03	ATAPTNETL	0.7237	0.9876	0.1299	20.1	0.1447	22.38	1/982	1/7748
SNV	Breast	ADAMTS16_G832A_3	HLA-B15:16	ATAPTNETL	0.9763	0.8364	0.1384	16.53	0.1513	22.38	1/982	1/7748
SNV	Breast	ADAMTS16_G832A_4	HLA-B15:16	IATAPTNETL	0.9767	0.7194	1.2629	236.76	0.7509	22.38	1/982	1/7748
SNV	Breast	ADAMTS16_G832A_3	HLA-B15:16	ATAPTNETLI	0.986	0.8509	1.6683	350.71	0.8951	22.38	1/982	1/7748
SNV	Breast	ADAMTS16_G832A_3	HLA-C16:01	ATAPTNETL	0.9711	0.9765	0.0711	18.67	0.163	22.38	1/982	1/7748
SNV	Breast	ASNS_F57L_7	HLA-B15:16	AVVDPLLGM	0.9354	0.9404	0.9935	133.96	0.5702	31.7	1/982	1/7748
SNV	Breast	ASNS_F57L_7	HLA-C16:01	AVVDPLLGM	0.9746	0.9833	0.4704	57.89	0.3137	31.7	1/982	1/7748
SNV	Breast	C9orf142_P153T_2	HLA-B57:03	STRPAGPQL	0.8239	0.9242	0.3189	26.4	0.1646	26.59	1/982	1/7748
SNV	Breast	C9orf142_P153T_3	HLA-B57:03	KSTRPAGPQL	0.8254	0.9194	0.6631	107.15	0.3318	26.59	1/982	1/7748
SNV	Breast	C9orf142_P153T_2	HLA-B57:03	STRPAGPQLF	0.9984	0.8983	0.0836	9.34	0.0917	26.59	1/982	1/7748
SNV	Breast	C9orf142_P153T_2	HLA-B15:16	STRPAGPQL	0.951	0.6395	0.395	10.11	0.0952	26.59	1/982	1/7748
SNV	Breast	C9orf142_P153T_3	HLA-B15:16	KSTRPAGPQL	0.9182	0.6338	1.9344	72.74	0.4171	26.59	1/982	1/7748
SNV	Breast	C9orf142_P153T_2	HLA-B15:16	STRPAGPQLF	0.9979	0.5997	0.5489	6.26	0.0502	26.59	1/982	1/7748
SNV	Breast	C9orf142_P153T_1	HLA-C07:01	TRPAGPQLF	0.9922	0.6075	0.1315	149.96	0.1051	26.59	1/982	1/7748
SNV	Breast	C9orf142_P153T_2	HLA-C16:01	STRPAGPQL	0.8632	0.9575	0.0969	7.35	0.0736	26.59	1/982	1/7748
SNV	Breast	DISC1_A205S_2	HLA-B57:03	SSFTSSFSF	0.9848	0.9295	0.0008	7.3	0.0715	3.91	1/982	1/7748
SNV	Breast	DISC1_A205S_5	HLA-B15:16	GSHSSFTSSF	0.9978	0.81	0.8046	402.92	0.956	3.91	1/982	1/7748
SNV	Breast	DISC1_A205S_2	HLA-C16:01	SSFTSSFSF	0.7792	0.9845	0.0541	10.15	0.1002	3.91	1/982	1/7748
SNV	Breast	EBAG9_D47H_8	HLA-B57:03	ITLPTTVHY	0.9475	0.9025	0.2498	10.54	0.1011	37.51	1/982	1/7748
SNV	Breast	EBAG9_D47H_8	HLA-B15:16	ITLPTTVHY	0.9844	0.5462	0.0256	1.73	0.0066	37.51	1/982	1/7748
SNV	Breast	GPR174_T296S_2	HLA-B57:03	SSNEFRRRL	0.7573	0.8595	0.9366	144.56	0.3753	8.6	1/982	1/7748
SNV	Breast	GPR174_T296S_2	HLA-C16:01	SSNEFRRRL	0.7197	0.9817	0.4427	37.31	0.2478	8.6	1/982	1/7748
SNV	Breast	HRH1_R53Q_4	HLA-B15:16	YAVQSERKL	0.907	0.8955	0.9869	299.74	0.8327	11.57	1/982	1/7748
SNV	Breast	HRH1_R53Q_4	HLA-C16:01	YAVQSERKL	0.7885	0.9828	0.1226	63.89	0.3338	11.57	1/982	1/7748
SNV	Breast	IGKV1-5_G38E_4	HLA-B57:03	ASVEDRVTI	0.9683	0.9668	0.4929	88.69	0.3042	1452.52	1/982	1/7748
SNV	Breast	IGKV1-5_G38E_4	HLA-B15:16	ASVEDRVTI	0.9909	0.7191	0.5002	30.65	0.24	1452.52	1/982	1/7748
SNV	Breast	IGKV1-5_G38E_4	HLA-C16:01	ASVEDRVTI	0.7352	0.9491	0.7897	146.29	0.5043	1452.52	1/982	1/7748
SNV	Breast	REC8_A512T_5	HLA-C07:01	RRMATRVFY	0.9977	0.5423	0.0592	44.87	0.0615	1.34	1/982	1/7748
SNV	Breast	SLC25A13_R292G_8	HLA-B15:16	MTLADIEGI	0.934	0.8852	0.647	91.58	0.4801	31.45	1/982	1/7748
SNV	Breast	SPAG5_S605F_10	HLA-B15:16	ISQLEQDLAF	0.9936	0.7447	1.6939	218.52	0.7253	17.97	1/982	1/7748
SNV	Breast	TRAPPC9_A1059T_6	HLA-B15:16	SVGPFTLTV	0.7215	0.8566	1.0381	382.75	0.9332	22.63	1/982	1/7748
SNV	Breast	TRAPPC9_A1059T_7	HLA-B15:16	RSVGPFTLTV	0.9783	0.8354	0.9191	107.81	0.5207	22.63	1/982	1/7748
SNV	Breast	TRAPPC9_A1059T_7	HLA-C16:01	RSVGPFTL	0.9924	0.9808	1.3599	180.32	0.5546	22.63	1/982	1/7748
SNV	Breast	TRAPPC9_A1059T_6	HLA-C16:01	SVGPFTLTV	0.9585	0.9813	0.4427	13.98	0.1304	22.63	1/982	1/7748
SNV	Breast	UBE2F_K97T_5	HLA-C16:01	MVPPTVKCL	0.937	0.9699	0.5074	352.63	0.7394	24.03	1/982	1/7748
SNV	Breast	ABCF2_D333H_7	HLA-A24:02	RFHWEQHQI	0.9858	0.7988	0.2082	255.83	0.5836	39.66	1/982	1/7748
SNV	Breast	AQP5_G101R_2	HLA-B27:05	ARAGILYGV	0.9997	0.5732	0.1191	1.31	0.024	1.8	1/982	1/7748
SNV	Breast	B4GALT5_E139Q_7	HLA-A32:01	GMDYIHQLF	0.9796	0.9709	1.1805	193.36	0.1974	33.85	1/982	1/7748
SNV	Breast	B4GALT5_E139Q_8	HLA-C02:02	IGMDYIHQL	0.8113	0.9918	0.4305	145.14	0.2141	33.85	1/982	1/7748
SNV	Breast	BDP1_R187K_4	HLA-A32:01	MTMKDFIYY	0.9064	0.9258	0.0227	155.06	0.1806	21.73	1/982	1/7748
SNV	Breast	BDP1_R187K_3	HLA-A32:01	TMKDFIYYL	0.9391	0.9356	0.1817	71.63	0.1241	21.73	1/982	1/7748
SNV	Breast	COL6A1_V48L_9	HLA-C02:02	FVLDTSESL	0.8481	0.9883	0.0736	21.31	0.0498	606.97	1/982	1/7748
SNV	Breast	DENND1A_R258T_7	HLA-A32:01	SLMEKVTNM	0.9733	0.9729	0.5321	155.23	0.1806	7.88	1/982	1/7748
SNV	Breast	DENND1A_R258T_7	HLA-C06:02	SLMEKVTNM	0.9978	0.9933	0.5225	456.71	0.1982	7.88	1/982	1/7748
SNV	Breast	DENND1A_R258T_7	HLA-C02:02	SLMEKVTNM	0.9131	0.9776	0.4701	29.95	0.0674	7.88	1/982	1/7748
SNV	Breast	EBF2_P458L_9	HLA-B27:05	IRNTSSISL	0.9992	0.7179	0.4199	16.74	0.2344	1.24	1/982	1/7748
SNV	Breast	GSK3A_D253N_3	HLA-C02:02	LVNPDTAVL	0.9443	0.9677	0.1845	22.42	0.0521	46.17	1/982	1/7748
SNV	Breast	KCNQ1_V185M_3	HLA-A24:02	KYMGLWGRL	0.9929	0.7236	0.0227	7.42	0.1882	11.11	1/982	1/7748
SNV	Breast	KCNQ1_V185M_3	HLA-A24:02	KYMGLWGRLRF	0.9995	0.805	0.265	21.38	0.2801	11.11	1/982	1/7748
SNV	Breast	LRP2_E3089K_5	HLA-B27:05	GRCIKMMKL	0.9992	0.8763	0.395	16.39	0.2329	21.88	1/982	1/7748
SNV	Breast	MAP2K4_L385P_6	HLA-C02:02	YVCKIPDQM	0.6257	0.9421	0.1623	496.45	0.4691	23.02	1/982	1/7748
SNV	Breast	MAP2_D545H_7	HLA-B27:05	MRVDDKHKI	0.9983	0.5395	0.23	190.87	0.4794	10.47	1/982	1/7748
SNV	Breast	MDM1_P243A_9	HLA-B27:05	KRNFKGLSAV	0.9998	0.8546	0.8974	445.04	0.5861	7.34	1/982	1/7748
SNV	Breast	NADK_V136M_9	HLA-C02:02	HLMEENMIM	0.605	0.9491	0.6219	127.54	0.1933	32.48	1/982	1/7748
SNV	Breast	NCOA3_L1060F_9	HLA-A32:01	ALLDQLHTF	0.9905	0.9817	0.0156	4.69	0.0251	37.79	1/982	1/7748
SNV	Breast	NCOA3_L1060F_10	HLA-A32:01	RALLDQLHTF	0.9946	0.99	0.4831	138.63	0.1712	37.79	1/982	1/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:05	ARHGGWTTK	0.9983	0.8261	0.1474	11.97	0.2093	18.63	11/982	17/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:05	ARHGGWTTKM	0.9998	0.666	0.0388	24.5	0.2651	18.63	11/982	17/7748
SNV	Breast	PRIMPOL_E20Q_1	HLA-B27:05	QRKPLSSVY	0.9987	0.7108	0.395	100.86	0.4085	20.09	1/982	1/7748
SNV	Breast	RBBP6_D664N_8	HLA-A32:01	KLDEFTNNF	0.9842	0.9703	0.4328	6.23	0.0289	40.12	1/982	1/7748
SNV	Breast	RBBP6_D664N_8	HLA-C02:02	KLDEFTNNF	0.5393	0.9881	0.4878	67.38	0.1285	40.12	1/982	1/7748
SNV	Breast	RBBP6_D664N_4	HLA-C02:02	FTNNFAKEL	0.816	0.9815	0.0793	32.01	0.0719	40.12	1/982	1/7748
SNV	Breast	RNGTT_S71L_9	HLA-C02:02	LLVDLTNTL	0.778	0.9777	0.2545	83.73	0.1428	19.74	1/982	1/7748
SNV	Breast	ST3GAL3_T96M_3	HLA-A32:01	LMMAIFPRF	0.9787	0.9649	0.0165	93.62	0.1398	5.51	1/982	1/7748
SNV	Breast	ST3GAL3_T96M_7	HLA-C02:02	YASALMMAI	0.9268	0.9458	0.0736	159.3	0.2292	5.51	1/982	1/7748
SNV	Breast	TSPYL2_R346W_9	HLA-A32:01	HSTPIRWHW	0.983	0.9799	0.1955	102.88	0.1453	33.16	1/982	1/7748
SNV	Breast	WDR7_S229L_3	HLA-B27:05	QRLLLVVCSK	0.9998	0.6335	0.5485	325.97	0.5456	8.94	1/982	1/7748
SNV	Breast	ZNF701_G500A_6	HLA-B27:05	RRLHTAEKPY	0.9999	0.8751	0.0455	432.79	0.5825	7.29	1/982	1/7748
SNV	Breast	CEP135_R510C_7	HLA-B39:06	ERDELQCML	0.9934	0.7044	0.7274	21.59	0.0987	7.78	1/982	1/7748
SNV	Breast	FMNL1_P792L_1	HLA-C07:02	LRLPERMTTL	0.9976	0.9839	0.3636	457.07	0.3842	10.88	1/982	1/7748
SNV	Breast	GLMP_A286T_8	HLA-C07:02	FAQWRPVTY	0.9036	0.9544	0.4666	220.35	0.2813	19.76	1/982	1/7748
SNV	Breast	TP53_G266E_1	HLA-B39:06	ERNSFEVRV	0.9981	0.661	0.4451	378.1	0.3271	42.34	1/982	1/7748
SNV	Breast	DLST_G33V_6	HLA-C07:02	RRSLPVVSL	0.982	0.9818	0.072	10.38	0.0507	12.15	1/982	1/7748
SNV	Breast	DLST_G33V_6	HLA-C06:02	RRSLPVVSL	0.5896	0.9977	0.0411	24.34	0.0459	12.15	1/982	1/7748
SNV	Breast	ZNF837_D264A_8	HLA-B07:02	RPRPIVPA	0.9998	0.688	0.6206	87.85	0.2534	1.02	1/982	1/7748
SNV	Breast	ZNF837_D264A_8	HLA-B07:02	RPRPIVPAP	0.9983	0.694	0.1021	29.54	0.1762	1.02	1/982	1/7748
SNV	Breast	ZNF837_D264A_6	HLA-B07:02	RPIVPAPPA	0.9989	0.6924	0.051	62.13	0.2242	1.02	1/982	1/7748
SNV	Breast	ZNF837_D264A_3	HLA-B07:02	VPAPPAQRL	0.9996	0.7337	0.0694	1.79	0.0281	1.02	1/982	1/7748
SNV	Breast	ZNF837_D264A_8	HLA-B07:02	RPRPIVPAPPA	0.9999	0.7451	0.2555	198.3	0.3205	1.02	1/982	1/7748
SNV	Breast	ABCA2_A642T_8	HLA-B58:02	KTNEIRRTY	0.9945	0.6835	0.2427	129.32	0.0226	32.46	1/982	1/7748
SNV	Breast	ABCA2_A642T_8	HLA-B58:02	KTNEIRRTYW	0.9996	0.7416	0.0734	50.4	0.0124	32.46	1/982	1/7748
SNV	Breast	BTAF1_W1276G_8	HLA-C17:01	YQQDGVNGL	0.9274	0.9581	0.3906	178.96	0.2872	40.69	1/982	1/7748
SNV	Breast	ERCC6_P307A_8	HLA-B42:02	APVTPPAAV	0.7211	0.5587	0.0344	99.22	0.057	3.1	1/982	1/7748
SNV	Breast	SOCS6_S405F_6	HLA-C17:01	NVPDGFFLV	0.5781	0.8629	1.3934	218.25	0.3189	64.85	1/982	1/7748
SNV	Breast	TMCC1_G406E_4	HLA-B58:02	KALEVISNF	0.9986	0.8484	0.0361	57.29	0.0133	27.25	1/982	1/7748
SNV	Breast	C11orf63_N327I_1	HLA-A24:02	IYQEHWSQY	0.9756	0.7923	0.1757	11.64	0.2288	10.83	1/982	1/7748
SNV	Breast	C11orf63_N327I_8	HLA-B27:05	QRAQQLKIY	0.9991	0.5643	0.4079	313.81	0.5406	10.83	1/982	1/7748
SNV	Breast	CLSTN3_N792S_3	HLA-A02:01	SSSEFIVEV	0.9941	0.8116	0.2101	134.15	0.439	153.29	1/982	1/7748
SNV	Breast	CLSTN3_N792S_6	HLA-B27:05	GRYSSSEFI	0.9993	0.9141	0.3224	10.02	0.1953	153.29	1/982	1/7748
SNV	Breast	CLSTN3_N792S_3	HLA-C02:02	SSSEFIVEV	0.8584	0.99	0.0884	190.33	0.258	153.29	1/982	1/7748
SNV	Breast	EFTUD2_M957V_7	HLA-A02:01	KFFDDPVLL	0.9365	0.6467	1.128	453.88	0.6541	30.8	1/982	1/7748
SNV	Breast	EFTUD2_M957V_6	HLA-C04:01	FFDDPVLL	1	0.7421	0.0024	1.68	0.0037	30.8	1/982	1/7748
SNV	Breast	EFTUD2_M957V_7	HLA-C04:01	KFFDDPVLL	0.9681	0.7729	0.1394	63.23	0.0608	30.8	1/982	1/7748
SNV	Breast	EFTUD2_M957V_6	HLA-C04:01	FFDDPVLLEL	0.9999	0.8055	0.0008	3.08	0.0081	30.8	1/982	1/7748
SNV	Breast	EFTUD2_M957V_7	HLA-C02:02	KFFDDPVLL	0.5035	0.9833	1.5455	180.97	0.2498	30.8	1/982	1/7748
SNV	Breast	GALNT6_F306S_7	HLA-C04:01	TIDLNTSEF	0.9996	0.7639	0.0553	216.51	0.1048	123.76	1/982	1/7748
SNV	Breast	MSH2_P439T_8	HLA-A02:01	LLAVFVTTL	0.9693	0.5136	0.0989	58.74	0.3231	18.95	1/982	1/7748
SNV	Breast	ARHGAP33_V425L_2	HLA-A02:01	RLHDVIQQL	0.9977	0.6407	0.0844	1.8	0.039	24.91	1/982	1/7748
SNV	Breast	ARHGAP33_V425L_2	HLA-B15:01	RLHDVIQQL	0.9912	0.9639	0.1466	135.51	0.3205	24.91	1/982	1/7748
SNV	Breast	ARHGAP33_V425L_2	HLA-C07:02	RLHDVIQQL	0.9696	0.9849	0.122	50.91	0.1344	24.91	1/982	1/7748
SNV	Breast	CASQ2_K166R_8	HLA-C07:02	ERIEDYIRL	0.8588	0.9321	0.659	257.69	0.2997	1.75	1/982	1/7748
SNV	Breast	DDX31_L317I_4	HLA-C07:02	TREIALQSF	0.8019	0.9636	0.1834	249.03	0.2957	15.28	1/982	1/7748
SNV	Breast	DHDDS_N164K_7	HLA-C07:02	SRHEISKAV	0.7988	0.8547	0.172	277.72	0.3107	27.06	1/982	1/7748
SNV	Breast	DHX57_I922F_9	HLA-B15:01	NIAETSITF	0.9964	0.8754	0.1255	47.57	0.2125	8.64	1/982	1/7748
SNV	Breast	DHX57_I922F_2	HLA-C07:02	TFDDVVYVI	0.9098	0.8968	0.4095	421.5	0.3722	8.64	1/982	1/7748
SNV	Breast	DOCK1_P1336A_7	HLA-B15:01	KVIRPKADY	0.9909	0.6611	0.4353	57.7	0.2334	32.78	1/982	1/7748
SNV	Breast	DOCK1_P1336A_6	HLA-B15:01	VIRPKADYF	0.9858	0.673	0.4557	58.14	0.2342	32.78	1/982	1/7748
SNV	Breast	HAP1_T486M_1	HLA-A02:01	MLAEELRTSL	0.9934	0.5381	0.8283	26.18	0.2402	1.51	1/982	1/7748
SNV	Breast	NRP2_A400S_3	HLA-A24:02	LHSPLLTRF	0.8333	0.6455	0.2421	423.29	0.6679	6.83	1/982	1/7748
SNV	Breast	NRP2_A400S_4	HLA-B15:01	KLHSPLLTRF	0.9999	0.7897	0.5336	287.37	0.4243	6.83	1/982	1/7748
SNV	Breast	NRP2_A400S_3	HLA-C07:02	LHSPLLTRF	0.822	0.9443	0.2234	458.68	0.3847	6.83	1/982	1/7748
SNV	Breast	ANK2_R1427Q_6	HLA-B18:01	QEPCGQLSF	0.8224	0.8803	0.1787	424.78	0.2499	5.23	1/982	1/7748
SNV	Breast	CDKL3_S339R_5	HLA-B08:01	NTLLRSSVL	0.9976	0.8221	0.1181	41.91	0.1048	1.95	1/982	1/7748
SNV	Breast	CSNK1E_R10L_9	HLA-C07:01	LRVGNKYLL	0.9955	0.7395	0.0592	36.52	0.0541	71.68	1/982	1/7748
SNV	Breast	NOTCH2_R1630G_7	HLA-A02:01	FLEIDNGQCV	0.9801	0.5645	1.0813	143.04	0.45	68.89	1/982	1/7748
SNV	Breast	CENPF_N313S_8	HLA-B44:03	KEMKGQVSKF	0.9993	0.9766	0.0376	3.02	0.0604	42.04	1/982	1/7748
SNV	Breast	DDO_G116S_2	HLA-B57:03	ASVHLVSGW	0.997	0.9965	0.0385	5.53	0.0527	3.34	1/982	1/7748
SNV	Breast	DDO_G116S_7	HLA-B44:03	AEAGDASVHL	0.984	0.9661	0.1409	29.18	0.1792	3.34	1/982	1/7748
SNV	Breast	MRPS2_A179T_1	HLA-C07:01	TRLLFGPTV	0.9867	0.8019	0.1598	250.01	0.1242	49.62	1/982	1/7748
SNV	Breast	SFRP1_V312M_9	HLA-B44:03	HECPTFQSM	0.9923	0.9753	0.0935	192.93	0.3342	159.29	1/982	1/7748
SNV	Breast	COL3A1_D43H_7	HLA-B53:01	QSYADRHVW	0.9661	0.7646	0.0701	62.02	0.1376	4870.34	1/982	1/7748
SNV	Breast	CYTIP_E161D_3	HLA-C08:02	TIDTLNGTM	0.9993	0.9787	0.0191	337.36	0.1181	6.49	1/982	1/7748
SNV	Breast	ETV1_R391L_7	HLA-C04:01	NYDKLSLSL	0.9993	0.5245	0.0051	2.71	0.0072	4.74	1/982	1/7748
SNV	Breast	JAK3_L413R_7	HLA-C04:01	DFDSFLRTV	0.9961	0.9604	0.0778	261.78	0.1137	8.98	1/982	1/7748
SNV	Breast	SIRPA_A390V_6	HLA-A02:01	ALLMAVLYL	0.9713	0.5583	0.3713	31.86	0.2579	43.01	1/982	1/7748
SNV	Breast	SLC38A10_S545L_9	HLA-A02:01	QMAPPLPDL	0.9756	0.7111	0.4044	110.83	0.4063	62.51	1/982	1/7748
SNV	Breast	ZNF541_G1342S_5	HLA-B53:01	GADISPLQW	0.6798	0.8583	0.4075	151.36	0.2028	1.39	3/982	3/7748
SNV	Breast	ZNF541_G1342S_5	HLA-B53:01	GADISPLQW	0.6798	0.8583	0.4075	151.36	0.2028	1.39	3/982	3/7748
SNV	Breast	ZNF541_G1342S_5	HLA-B53:01	GADISPLQW	0.6798	0.8583	0.4075	151.36	0.2028	1.39	3/982	3/7748
SNV	Breast	ANKLE2_D534N_4	HLA-B58:01	KAENFRKLW	0.9968	0.7907	0.1471	2.48	0.0425	8.99	1/982	1/7748
SNV	Breast	BDH1_E251K_1	HLA-B58:01	KSIQAIAKKMW	0.9998	0.8815	0.2174	9.01	0.1341	17.77	1/982	1/7748
SNV	Breast	BDH1_E251K_4	HLA-C12:03	YSPKSIQAI	0.9914	0.9452	0.2361	38.54	0.323	17.77	1/982	1/7748
SNV	Breast	CAPN9_T448M_5	HLA-C07:01	ARSKMFINL	0.9985	0.7447	0.044	266.56	0.1283	17.29	1/982	1/7748
SNV	Breast	CAPN9_T448M_9	HLA-C12:03	HASRARSKM	0.5405	0.9866	0.2116	370.04	0.9552	17.29	1/982	1/7748
SNV	Breast	DIAPH1_S264F_9	HLA-C12:03	MIDAAKLLF	0.7759	0.9859	0.9805	313.81	0.8937	18.4	1/982	1/7748
SNV	Breast	DOPEY2_P2163T_2	HLA-C12:03	FTPDKMPLF	0.9107	0.9834	0.1782	24.56	0.2405	4.27	1/982	1/7748
SNV	Breast	EPHB4_R444Q_1	HLA-B58:01	QSSPSSLSL	0.8467	0.8609	0.2425	240.45	0.5215	50.99	1/982	1/7748
SNV	Breast	EPHB4_R444Q_1	HLA-B58:01	QSSPSSLSLAW	0.9993	0.9766	0.0927	48.25	0.2972	50.99	1/982	1/7748
SNV	Breast	EPHB4_R444Q_3	HLA-C12:03	VTQSSPSSL	0.9574	0.9699	0.2075	120.68	0.5724	50.99	1/982	1/7748
SNV	Breast	EPHB4_R444Q_1	HLA-C12:03	QSSPSSLSL	0.9972	0.9743	0.0922	60.45	0.4018	50.99	1/982	1/7748
SNV	Breast	ERBB3_Q138L_8	HLA-C07:01	LRQLRLTLL	0.9959	0.7567	0.1363	179.95	0.1119	121.84	1/982	1/7748
SNV	Breast	GPR162_D415N_4	HLA-B15:03	LSHNETNIF	0.9825	0.6925	0.1741	111.91	0.5739	15.62	1/982	1/7748
SNV	Breast	GPR162_D415N_4	HLA-B58:01	LSHNETNIF	0.9861	0.7459	0.2143	363.92	0.5933	15.62	1/982	1/7748
SNV	Breast	GPR162_D415N_4	HLA-C12:03	LSHNETNIF	0.8032	0.982	0.1929	272.3	0.8451	15.62	1/982	1/7748
SNV	Breast	ICE1_H1579Y_9	HLA-B15:03	SASSRVETY	0.9429	0.809	0.197	51.18	0.4247	4.81	1/982	1/7748
SNV	Breast	ICE1_H1579Y_1	HLA-B15:03	YQSEVAQSF	0.9796	0.8558	0.0005	1.14	0.0043	4.81	1/982	1/7748
SNV	Breast	ICE1_H1579Y_9	HLA-B58:01	SASSRVETY	0.9452	0.8278	0.6131	122.17	0.4208	4.81	1/982	1/7748
SNV	Breast	ICE1_H1579Y_9	HLA-C12:03	SASSRVETY	0.5515	0.9754	0.0139	11.56	0.1394	4.81	1/982	1/7748
SNV	Breast	ICE1_H1579Y_1	HLA-C12:03	YQSEVAQSF	0.9947	0.9725	0.2647	10.72	0.1309	4.81	1/982	1/7748
SNV	Breast	LMTK2_E1418Q_10	HLA-B58:01	STDEEGGGFQW	0.9994	0.9864	0.1634	23.47	0.2187	2.45	1/982	1/7748
SNV	Breast	MAN1A1_E280K_6	HLA-A68:02	EISVFKVNI	0.994	0.536	0.5643	152.41	0.277	4.95	1/982	1/7748
SNV	Breast	MAN1A1_E280K_4	HLA-B15:03	SVFKVNIRF	0.8602	0.5525	0.1019	16.2	0.2278	4.95	1/982	1/7748
SNV	Breast	MAN1A1_E280K_4	HLA-B58:01	SVFKVNIRF	0.9846	0.5921	0.1446	12.42	0.157	4.95	1/982	1/7748
SNV	Breast	MAN1A1_E280K_5	HLA-B58:01	ISVFKVNIRF	0.9974	0.5974	1.1918	111.14	0.4072	4.95	1/982	1/7748
SNV	Breast	MAN1A1_E280K_4	HLA-C12:03	SVFKVNIRF	0.6299	0.9526	0.4612	15.82	0.1811	4.95	1/982	1/7748
SNV	Breast	MCM10_E291K_8	HLA-C12:03	MAREKLEKI	0.9467	0.9781	0.1536	100.37	0.5232	2.29	1/982	1/7748
SNV	Breast	NAT9_S43L_4	HLA-C12:03	LTALEPLTL	0.9693	0.9912	0.278	98.53	0.5182	17.09	1/982	1/7748
SNV	Breast	NDC80_E367K_7	HLA-B58:01	YSVADIKRI	0.9778	0.7429	1.3422	414.1	0.6201	5.05	1/982	1/7748
SNV	Breast	NDC80_E367K_7	HLA-C12:03	YSVADIKRI	0.8888	0.9262	0.7321	216.89	0.7637	5.05	1/982	1/7748
SNV	Breast	RALGAPA1_E231Q_2	HLA-B15:03	KQNQERGFSF	0.9852	0.5455	0.2544	3.49	0.0629	1.29	1/982	1/7748
SNV	Breast	RBM6_D773H_8	HLA-B58:01	RGGGRNSHW	0.9549	0.7991	0.2572	178.16	0.4748	16.97	1/982	1/7748
SNV	Breast	SLC25A39_A171G_7	HLA-A68:02	MVAGALGRL	0.9823	0.8011	0.195	25.93	0.1026	140.19	1/982	1/7748
SNV	Breast	SLC25A39_A171G_1	HLA-C07:01	GRLGTVTVI	0.9965	0.655	0.1841	308.73	0.1397	140.19	1/982	1/7748
SNV	Breast	SLC25A39_A171G_7	HLA-C12:03	MVAGALGRL	0.9868	0.9871	0.963	55.91	0.3877	140.19	1/982	1/7748
SNV	Breast	SLC25A39_A171G_4	HLA-C12:03	GALGRLGTV	0.8453	0.9931	0.58	272.48	0.8454	140.19	1/982	1/7748
SNV	Breast	SLC25A39_A171G_2	HLA-C12:03	LGRLGTVTV	0.953	0.9893	1.9594	421.82	1.005	140.19	1/982	1/7748
SNV	Breast	THTPA_E173Q_1	HLA-B15:03	QKIHRLSSM	0.8181	0.7276	0.6721	294.39	0.8127	3.1	1/982	1/7748
SNV	Breast	THTPA_E173Q_4	HLA-C12:03	TALQKIHRL	0.9412	0.9865	0.2075	34.39	0.3032	3.1	1/982	1/7748
SNV	Breast	TMEM30A_L183F_7	HLA-B15:03	SMFNDTFEL	0.7286	0.8048	0.236	126.1	0.599	33.96	1/982	1/7748
SNV	Breast	TMEM30A_L183F_7	HLA-C12:03	SMFNDTFEL	0.9907	0.9902	0.5044	39.83	0.3287	33.96	1/982	1/7748
SNV	Breast	XPO5_G67A_5	HLA-C07:01	VRHFALQIL	0.9918	0.7031	0.076	178.74	0.1117	13.07	1/982	1/7748
SNV	Breast	XPO5_G67A_8	HLA-C12:03	VAIVRHFAL	0.9941	0.9774	0.2319	25.56	0.2465	13.07	1/982	1/7748
SNV	Breast	XPO5_G67A_2	HLA-C12:03	FALQILEHV	0.9358	0.9946	0.0436	238.23	0.7994	13.07	1/982	1/7748
SNV	Breast	ANKRD11_E348K_8	HLA-B35:01	APVKDEYKF	0.98	0.9347	0.1539	3.89	0.0754	10.69	1/982	1/7748
SNV	Breast	BTBD10_V152I_8	HLA-B35:01	TAGEMVFIY	0.9894	0.9391	0.1966	13.2	0.151	36.37	1/982	1/7748
SNV	Breast	BOLA1_A112T_7	HLA-B58:01	IQARTPTQW	0.7474	0.9721	0.1655	6.74	0.1113	51.77	1/982	1/7748
SNV	Breast	BOLA1_A112T_8	HLA-B58:01	AIQARTPTQW	0.9658	0.991	0.649	266.46	0.5393	51.77	1/982	1/7748
SNV	Breast	BOLA1_A112T_9	HLA-B58:01	LAIQARTPTQW	0.9996	0.99	0.1898	28.22	0.2354	51.77	1/982	1/7748
SNV	Breast	MAP3K12_E427K_7	HLA-B58:01	HALDIRKHY	0.9615	0.7813	0.5149	207.74	0.4968	9.79	1/982	1/7748
SNV	Breast	NAV1_M1043V_9	HLA-A02:01	SLAERPKGV	0.9736	0.5824	0.6314	42.31	0.2855	5.42	1/982	1/7748
SNV	Breast	RANBP2_P797A_3	HLA-B58:01	YSAKTPPRW	0.999	0.9483	0.0037	1.09	0.0038	32.5	1/982	1/7748
SNV	Breast	RANBP2_P797A_4	HLA-B58:01	KYSAKTPPRW	0.9751	0.9689	1.2474	2.11	0.0308	32.5	1/982	1/7748
SNV	Breast	SCARB2_V408M_7	HLA-B58:01	RTMVFPMMY	0.9898	0.861	0.0747	3.65	0.0665	216.57	1/982	1/7748
SNV	Breast	SLITRK6_I450L_9	HLA-B18:01	LEYNAIKEL	0.9835	0.934	0.1094	18.1	0.0794	24.96	1/982	1/7748
SNV	Breast	ABCC4_F1048L_7	HLA-C04:01	IFDNVNLM	1	0.7033	0.0325	4.6	0.0115	3.95	1/982	1/7748
SNV	Breast	ABCC4_F1048L_7	HLA-C04:01	IFDNVNLMY	0.9514	0.7151	0.147	8.11	0.0188	3.95	1/982	1/7748
SNV	Breast	MYO1C_S554T_8	HLA-B53:01	YAGEVTYTV	0.6211	0.8823	0.6048	335.29	0.2776	219.61	1/982	1/7748
SNV	Breast	RABGEF1_A285V_2	HLA-B58:01	KVITDIIEM	0.9845	0.8022	0.8778	129.97	0.4297	3.74	1/982	1/7748
SNV	Breast	TTC7B_L187F_10	HLA-B58:01	KAGDIALLYF	0.9985	0.6614	0.2651	24.51	0.2226	5.12	1/982	1/7748
SNV	Breast	TTC7B_L187F_2	HLA-C04:01	YFQEIERVI	0.6663	0.7981	0.0986	427.08	0.1432	5.12	1/982	1/7748
SNV	Breast	ARID1B_K1764N_3	HLA-B15:03	KENPKQASKF	0.9621	0.8155	1.0421	33.77	0.3492	17.96	1/982	1/7748
SNV	Breast	CASP3_D192E_8	HLA-B15:03	HKIPVEAEF	0.5539	0.9438	0.3886	1.91	0.025	34.2	1/982	1/7748
SNV	Breast	CASP3_D192E_6	HLA-B35:01	IPVEAEFLY	0.9987	0.9222	0.0024	1.12	0.0075	34.2	1/982	1/7748
SNV	Breast	CASP3_D192E_6	HLA-B35:01	IPVEAEFLYAY	0.9986	0.8564	0.4542	9.17	0.1223	34.2	1/982	1/7748
SNV	Breast	COMMD4_K66E_1	HLA-B35:01	EATVAVLSF	0.9759	0.9624	0.0894	10.59	0.1332	68.02	1/982	1/7748
SNV	Breast	DHTKD1_P500L_1	HLA-B35:01	LPALNLQAH	0.9823	0.911	0.2676	408.45	0.4635	19.27	1/982	1/7748
SNV	Breast	FBXW7_N542I_7	HLA-A02:01	TLQGHTIRV	0.9829	0.5736	0.2395	6.22	0.1202	3.22	1/982	1/7748
SNV	Breast	HDAC6_Q1193H_7	HLA-C02:10	QAYVHHHAL	0.7203	0.9492	0.0424	366.64	0.3865	16.76	1/982	1/7748
SNV	Breast	HNRNPU_P815T_4	HLA-B15:03	GQKTWSQHY	0.716	0.6111	0.035	3.46	0.0623	173.05	1/982	1/7748
SNV	Breast	INTS12_R41Q_3	HLA-B35:01	LAQGIDSSY	0.9744	0.7654	0.037	2.11	0.0396	14.19	1/982	1/7748
SNV	Breast	OBSCN_E567Q_2	HLA-B15:03	AQWVATPEL	0.8115	0.9435	0.1489	14.2	0.2073	2.52	1/982	1/7748
SNV	Breast	ORC1_K739N_3	HLA-B15:03	QQNPDSPGL	0.6322	0.8522	0.8091	142.41	0.6311	28.88	1/982	1/7748
SNV	Breast	PCYOX1L_E105V_1	HLA-B15:03	VVVGRSAIF	0.9293	0.6644	0.2415	163.74	0.6682	8.45	1/982	1/7748
SNV	Breast	PLCB2_K567R_5	HLA-B15:03	FSAQRNRSY	0.9215	0.5296	0.2384	99.75	0.5496	6.98	1/982	1/7748
SNV	Breast	PLCB2_K567R_3	HLA-B15:03	AQRNRSYVI	0.6043	0.5271	1.475	261.62	0.784	6.98	1/982	1/7748
SNV	Breast	PLCB2_K567R_5	HLA-B35:01	FSAQRNRSY	0.9264	0.7322	0.1454	66.14	0.2692	6.98	1/982	1/7748
SNV	Breast	SOX4_S391F_9	HLA-B15:03	SSHSSSSSF	0.981	0.7859	0.035	17.81	0.2426	97.29	1/982	1/7748
SNV	Breast	TBC1D17_N232S_8	HLA-B15:03	SSFSRVTSF	0.993	0.9226	0.0079	2.66	0.0403	40.21	1/982	1/7748
SNV	Breast	TBC1D17_N232S_8	HLA-B35:01	SSFSRVTSF	0.9841	0.9246	0.0706	383.63	0.4556	40.21	1/982	1/7748
SNV	Breast	TBC1D17_N232S_8	HLA-C02:10	SSFSRVTSF	0.6755	0.9902	0.002	18.02	0.0405	40.21	1/982	1/7748
SNV	Breast	TRAFD1_A317P_5	HLA-B35:01	NPSRPLPSL	0.9567	0.7682	0.2808	175.24	0.3649	33.89	1/982	1/7748
SNV	Breast	VPS33A_L515V_7	HLA-C02:10	RSIEEVVRI	0.6662	0.9771	0.7116	114.4	0.1761	5.39	1/982	1/7748
SNV	Breast	ZNF770_R25W_6	HLA-A02:01	KLPRNWPYV	0.9892	0.7738	0.2524	128.31	0.4314	1.15	1/982	1/7748
SNV	Breast	ACAP3_D131Y_3	HLA-B45:01	REYLELSLV	0.9953	0.7597	0.2642	72.56	0.1757	27.56	1/982	1/7748
SNV	Breast	ACAP3_D131Y_9	HLA-C16:01	KQFDKVREY	0.6791	0.9177	0.6071	270.14	0.6629	27.56	1/982	1/7748
SNV	Breast	AGL_D328N_3	HLA-B58:01	KSNPNQHLTI	0.997	0.843	0.8284	73.27	0.3519	211.01	1/982	1/7748
SNV	Breast	ATP13A2_T278S_2	HLA-C16:01	KSRKQSQTL	0.8298	0.9461	0.4879	61.9	0.3273	60.52	1/982	1/7748
SNV	Breast	CCDC158_S44L_2	HLA-A02:01	SLAGTLTQV	0.996	0.6982	0.0348	1.49	0.0203	1.01	1/982	1/7748
SNV	Breast	CCDC158_S44L_3	HLA-A02:01	TSLAGTLTQV	0.964	0.6168	1.4521	267.85	0.5543	1.01	1/982	1/7748
SNV	Breast	CLCN6_M562T_4	HLA-B58:01	VTLTVAKW	0.999	0.9896	0.3526	19.22	0.2007	9.4	1/982	1/7748
SNV	Breast	CLCN6_M562T_5	HLA-B58:01	MVTLTVAKW	0.9971	0.9921	0.03	6.06	0.1017	9.4	1/982	1/7748
SNV	Breast	DENND2C_E275A_6	HLA-B58:01	KSFEFADIQHF	0.9998	0.8193	0.2104	33.3	0.2504	2	1/982	1/7748
SNV	Breast	EEF2_P377L_7	HLA-A02:01	LLYEGPLDDEA	0.9973	0.5079	1.1498	67.66	0.3413	1722.34	1/982	1/7748
SNV	Breast	EXOC6_V128L_9	HLA-C16:01	IQQRNITTL	0.9691	0.9851	1.669	226.85	0.6119	20.46	1/982	1/7748
SNV	Breast	FAM96A_Q29H_5	HLA-C16:01	GAARHPRIM	0.6804	0.9766	0.2372	428.18	0.7944	73.26	1/982	1/7748
SNV	Breast	FOXC1_S543F_9	HLA-B58:01	SSQSLYRTF	0.9918	0.6381	0.1441	25.74	0.2271	1.76	1/982	1/7748
SNV	Breast	FOXC1_S543F_9	HLA-C16:01	SSQSLYRTF	0.8927	0.9538	0.1226	82.61	0.3861	1.76	1/982	1/7748
SNV	Breast	FYB_G647A_6	HLA-A02:01	KQLDMADEV	0.9642	0.555	0.5034	358.27	0.6019	7.03	1/982	1/7748
SNV	Breast	GSDMA_P122L_3	HLA-C16:01	VALKALETV	0.8251	0.9897	0.4145	329.98	0.7206	2.17	1/982	1/7748
SNV	Breast	IGKV3-20_S50I_6	HLA-B58:01	ASQSVISSY	0.833	0.8051	0.1864	25.49	0.2262	32.94	1/982	1/7748
SNV	Breast	IGKV3-20_S50I_3	HLA-B58:01	SVISSYLAW	0.9963	0.9001	0.0194	2.77	0.0506	32.94	1/982	1/7748
SNV	Breast	IGKV3-20_S50I_7	HLA-B58:01	RASQSVISSY	0.9838	0.8391	0.4259	62.77	0.3316	32.94	1/982	1/7748
SNV	Breast	IGKV3-20_S50I_4	HLA-B58:01	QSVISSYLAW	0.9989	0.9494	0.1584	31.98	0.2466	32.94	1/982	1/7748
SNV	Breast	JADE3_R468P_5	HLA-C16:01	SIHTPMRMF	0.7141	0.9769	0.6071	249.25	0.6394	30.34	1/982	1/7748
SNV	Breast	KIDINS220_D441A_2	HLA-C16:01	YALYSSAL	0.9972	0.9802	0.7424	380.25	0.7608	24.01	1/982	1/7748
SNV	Breast	MARK2_R715H_6	HLA-C16:01	MMREIHKVL	0.8079	0.9824	1.0535	68.92	0.3492	86.11	1/982	1/7748
SNV	Breast	MYO7A_L1468F_8	HLA-C16:01	YARFKWPFL	0.5647	0.9784	0.3891	127.96	0.4761	1.42	1/982	1/7748
SNV	Breast	NDUFAF3_Q88E_9	HLA-B58:01	ALLPHSVVEW	0.991	0.9919	0.2908	412.88	0.6194	90.57	1/982	1/7748
SNV	Breast	PELP1_L213F_3	HLA-B58:01	GSFKGKLASF	0.9952	0.8835	0.9343	176.89	0.4738	47.65	1/982	1/7748
SNV	Breast	PITPNM1_P78A_3	HLA-A02:01	LLAKAALQV	0.9969	0.6677	0.1021	20.64	0.22	18.93	1/982	1/7748
SNV	Breast	PITPNM1_P78A_5	HLA-C16:01	RALLAKAAL	0.9747	0.991	0.2915	4.21	0.0376	18.93	1/982	1/7748
SNV	Breast	PLCL2_K999T_2	HLA-B58:01	KTIVTTYDM	0.9909	0.6369	0.344	348.31	0.5857	2.93	1/982	1/7748
SNV	Breast	PLCL2_K999T_8	HLA-C16:01	IVPEVLKTI	0.7735	0.9833	0.9782	475.45	0.8276	2.93	1/982	1/7748
SNV	Breast	PRKDC_K902N_4	HLA-B45:01	REMNPVIFL	0.953	0.7351	0.2801	5.92	0.0312	101.34	1/982	2/7748
SNV	Breast	RAPSN_A265T_9	HLA-B58:01	RSRGDLETTF	0.9952	0.9831	0.4344	22	0.2129	1.03	1/982	1/7748
SNV	Breast	RNASEH2B_S246L_9	HLA-C16:01	SASLPNPPL	0.918	0.9799	0.0711	35.78	0.2413	5.24	1/982	1/7748
SNV	Breast	SBF1_K1303T_7	HLA-B58:01	RTAPRGTW	0.9925	0.964	0.7348	7.77	0.1239	42.06	1/982	1/7748
SNV	Breast	SBF1_K1303T_10	HLA-B58:01	ASRRTAPRGTW	0.9884	0.8689	0.4763	406.37	0.6159	42.06	1/982	1/7748
SNV	Breast	SIPA1L1_V368L_6	HLA-C16:01	ASAAALASL	0.9852	0.9898	0.0503	8.72	0.0902	16.17	1/982	1/7748
SNV	Breast	SLC38A10_S232F_5	HLA-A02:01	SIFAFSLNV	0.9712	0.5338	0.0764	7.41	0.1341	62.11	1/982	1/7748
SNV	Breast	SLC38A10_S232F_9	HLA-B58:01	KTMSSIFAF	0.9976	0.6651	0.0016	1.81	0.0259	62.11	1/982	1/7748
SNV	Breast	SLC38A10_S232F_1	HLA-B58:01	FSLNVVTTF	0.9937	0.9023	0.0104	10.92	0.1469	62.11	1/982	1/7748
SNV	Breast	SLC38A10_S232F_9	HLA-C16:01	KTMSSIFAF	0.862	0.9549	0.0515	4.2	0.0376	62.11	1/982	1/7748
SNV	Breast	SLC38A10_S232F_7	HLA-C16:01	MSSIFAFSL	0.9704	0.9815	0.117	147.17	0.5058	62.11	1/982	1/7748
SNV	Breast	SLC38A10_S232F_1	HLA-C16:01	FSLNVVTTF	0.9467	0.9851	0.014	7.26	0.0727	62.11	1/982	1/7748
SNV	Breast	SLC39A6_E683K_3	HLA-B58:01	YAKNVSMW	0.9989	0.7886	0.526	307.22	0.564	686.32	1/982	1/7748
SNV	Breast	SULF1_G329A_2	HLA-B58:01	KAKSMPYDF	0.9839	0.759	0.2235	34.56	0.2551	164.04	1/982	1/7748
SNV	Breast	SULF1_G329A_6	HLA-C16:01	FGLVKAKSM	0.8666	0.9824	0.6158	326.42	0.7175	164.04	1/982	1/7748
SNV	Breast	TECTA_T1211N_3	HLA-B45:01	VENDFGLKV	0.9986	0.6762	0.0444	4.61	0.0236	1.59	1/982	1/7748
SNV	Breast	TECTA_T1211N_3	HLA-B45:01	VENDFGLKVV	0.9964	0.809	0.2146	57.62	0.1576	1.59	1/982	1/7748
SNV	Breast	TP53_P250L_2	HLA-A02:01	RLILTIITL	0.9496	0.569	0.3197	24.45	0.2344	51.77	1/982	3/7748
SNV	Breast	TRAF7_A477S_2	HLA-C16:01	RSHDNPVCTL	0.9903	0.9863	0.257	212.37	0.594	92.68	1/982	1/7748
SNV	Breast	TRAM1L1_F228L_2	HLA-A02:01	YLVELLSHM	0.9965	0.6343	0.0245	2.15	0.0489	11.34	1/982	1/7748
SNV	Breast	TRAM1L1_F228L_2	HLA-C16:01	YLVELLSHM	0.9795	0.9807	0.4785	342.79	0.7314	11.34	1/982	1/7748
SNV	Breast	TRAM1L1_Y227S_4	HLA-A02:01	VLHSFVELL	0.9915	0.7184	0.1395	18.91	0.2127	11.34	1/982	1/7748
SNV	Breast	TRAM1L1_Y227S_5	HLA-C16:01	LVLHSFVEL	0.9695	0.9933	0.6897	217.42	0.5996	11.34	1/982	1/7748
SNV	Breast	VPS13D_Q1010H_1	HLA-C16:01	HTYGADFDL	0.8062	0.9793	1.6547	417.7	0.7874	12.85	1/982	1/7748
SNV	Breast	ZNF248_Q207L_3	HLA-B58:01	LSLPSFGQSF	0.9953	0.9749	0.1745	136.86	0.4371	3.25	1/982	1/7748
SNV	Breast	ZNF248_Q207L_2	HLA-C16:01	SLPSFGQSF	0.6499	0.9882	0.4704	335.35	0.7252	3.25	1/982	1/7748
SNV	Breast	AMACR_E362K_8	HLA-B44:03	EEFGFSRKEIY	0.9999	0.9209	0.0935	5.39	0.0913	2.81	1/982	1/7748
SNV	Breast	ETV7_P296A_3	HLA-B44:03	KEAGQKLLF	0.999	0.754	0.0469	2.38	0.0473	26.97	1/982	1/7748
SNV	Breast	FAM83A_V198A_7	HLA-C04:01	LLDQGGAKL	0.9999	0.9409	0.0171	128.78	0.08	11.85	1/982	1/7748
SNV	Breast	GBE1_D83E_2	HLA-B44:03	AEGGLYCKEW	0.9994	0.987	0.0365	3	0.0598	15.27	1/982	1/7748
SNV	Breast	IFT52_D234V_8	HLA-B44:03	EENSKIMVV	0.9611	0.9569	0.3081	299.75	0.3687	36.56	1/982	1/7748
SNV	Breast	IL20RA_E473D_1	HLA-B44:03	DEPSTTLVDW	0.9315	0.9106	0.447	461.69	0.4038	3.61	1/982	1/7748
SNV	Breast	SPTBN5_V513L_6	HLA-B44:03	QEEVTLRW	0.9998	0.9936	0.4058	9.69	0.1218	1.91	1/982	1/7748
SNV	Breast	SPTBN5_V513L_7	HLA-B44:03	RQEEVTLRW	0.9908	0.9827	0.5234	342.16	0.3791	1.91	1/982	1/7748
SNV	Breast	TRPM2_K918E_2	HLA-B44:03	SETLGPKII	0.9866	0.8352	0.3738	226.4	0.3467	9.87	1/982	1/7748
SNV	Breast	CST3_S139L_10	HLA-B35:03	VPWQGTMTLL	0.9519	0.5979	0.149	149.56	0.1185	95.9	1/982	1/7748
SNV	Breast	FAM78A_R185L_2	HLA-A01:01	YLDQSFTTW	0.9457	0.5864	0.5497	156.73	0.4521	5.21	1/982	1/7748
SNV	Breast	FAM78A_R185L_2	HLA-C04:01	YLDQSFTTW	0.9917	0.9823	0.3287	57.04	0.0585	5.21	1/982	1/7748
SNV	Breast	KDM4A_P348L_4	HLA-B35:03	LPTLEAAEF	0.9704	0.925	0.076	33.65	0.0659	34.94	1/982	1/7748
SNV	Breast	PCDHB8_A502T_7	HLA-B35:03	DPHLPLTSL	0.9707	0.741	0.0544	44.93	0.0736	1.07	1/982	1/7748
SNV	Breast	PCDHB8_A502T_4	HLA-B35:03	LPLTSLVSI	0.9928	0.8353	0.0401	250.36	0.143	1.07	1/982	1/7748
SNV	Breast	TBL1X_T316M_10	HLA-C04:01	SYDGFARIWM	0.9963	0.7779	0.2819	449.87	0.1469	31.58	1/982	1/7748
SNV	Breast	TG_R1423H_7	HLA-B35:03	FPAETIHF	0.9924	0.8898	0.1225	34.46	0.0664	2.52	1/982	1/7748
SNV	Breast	TG_R1423H_7	HLA-B35:03	FPAETIHFL	0.9984	0.8922	0.0006	1.17	0.0016	2.52	1/982	1/7748
SNV	Breast	TG_R1423H_9	HLA-C02:02	KTFPAETIHF	0.9947	0.9865	0.1115	207.71	0.2723	2.52	1/982	1/7748
SNV	Breast	TPRG1_S24F_3	HLA-B35:03	QPFETDHLSM	0.9506	0.9532	0.0885	96.36	0.1015	6.11	1/982	1/7748
SNV	Breast	ACTRT3_T159A_3	HLA-B15:01	GVAQSVPIF	0.9886	0.8729	0.5336	48.19	0.2139	2.08	1/982	1/7748
SNV	Breast	ACTRT3_T159A_1	HLA-B15:01	AQSVPIFEGY	0.9998	0.744	0.139	29.76	0.1701	2.08	1/982	1/7748
SNV	Breast	CNTLN_Q1022H_1	HLA-B15:01	HQQVSDQRF	0.9962	0.7289	0.5867	51.94	0.222	1	1/982	1/7748
SNV	Breast	CUX1_R1212W_4	HLA-B08:01	YMKWRHSSV	0.9992	0.8951	0.0019	5.69	0.0247	17.66	1/982	1/7748
SNV	Breast	ERAP2_D494Y_8	HLA-C07:01	YRNAKNDYL	0.9889	0.5248	0.0851	6.05	0.0112	28.93	1/982	1/7748
SNV	Breast	GDAP1_T307A_5	HLA-A02:01	AVLPAAFRV	0.9793	0.7924	0.363	11.93	0.1728	23.83	2/982	2/7748
SNV	Breast	GDAP1_T307A_7	HLA-B15:01	ISAVLPAAF	0.991	0.8664	0.0993	228.13	0.3885	23.83	2/982	2/7748
SNV	Breast	GDAP1_T307A_7	HLA-C03:03	ISAVLPAAF	0.995	0.9779	0.3719	162.28	0.3327	23.83	2/982	2/7748
SNV	Breast	HIRA_V618D_1	HLA-B08:01	DPLAKASSL	0.9942	0.7374	0.1065	9.33	0.0372	6.65	1/982	1/7748
SNV	Breast	MFHAS1_L614F_5	HLA-A02:01	FQYLFNHRL	0.9475	0.5247	0.2432	151.01	0.4592	7.1	1/982	1/7748
SNV	Breast	MFHAS1_L614F_5	HLA-C03:03	FQYLFNHRL	0.89	0.988	1.2249	462.84	0.4901	7.1	1/982	1/7748
SNV	Breast	MFHAS1_L614F_3	HLA-C03:03	YLFNHRLQI	0.7072	0.9814	0.5008	34.84	0.1748	7.1	1/982	1/7748
SNV	Breast	NPAS2_D44E_4	HLA-B08:01	RKMEKTTVL	0.6124	0.581	0.6989	325.67	0.281	1.22	1/982	1/7748
SNV	Breast	NUP205_V368F_6	HLA-B15:01	AIADNFFLF	0.9792	0.9171	0.1255	79.62	0.2655	33.12	1/982	1/7748
SNV	Breast	NUP205_V368F_7	HLA-C03:03	LAIADNFFL	0.9985	0.9859	0.2369	132.71	0.3051	33.12	1/982	1/7748
SNV	Breast	PCDHB13_A545V_6	HLA-A02:01	ALSSEVLVRV	0.9982	0.7478	0.3693	8.83	0.1486	1.81	1/982	1/7748
SNV	Breast	PCDHB13_A545V_2	HLA-B08:01	EVLVRVVVL	0.9978	0.7248	0.0877	18.39	0.0606	1.81	1/982	1/7748
SNV	Breast	TSHZ1_Q950R_8	HLA-A02:01	WLANVKYRL	0.9833	0.5938	0.5218	19.85	0.2168	9.55	1/982	1/7748
SNV	Breast	TSHZ1_Q950R_7	HLA-B08:01	LANVKYRL	0.999	0.5585	0.496	443.8	0.3176	9.55	1/982	1/7748
SNV	Breast	TSHZ1_Q950R_1	HLA-B15:01	RLRRTGGTKF	0.9979	0.9404	0.6289	12.55	0.1104	9.55	1/982	1/7748
SNV	Breast	TSHZ3_P643L_2	HLA-A02:01	TLSPCSSEV	0.9747	0.6853	0.1465	211.16	0.5157	16.02	1/982	1/7748
SNV	Breast	TTC3_L609I_6	HLA-A02:01	TLIYRIPGV	0.9882	0.5213	0.1084	2.2	0.05	51.13	1/982	1/7748
SNV	Breast	TTC3_L609I_3	HLA-C07:01	YRIPGVLTW	0.997	0.7622	0.1144	4.22	0.0085	51.13	1/982	1/7748
SNV	Breast	ZNF335_F562V_5	HLA-A02:01	KLSSVPCPV	0.9921	0.6643	0.0464	408.76	0.631	11.85	1/982	1/7748
SNV	Breast	ABCA12_P1938A_3	HLA-C16:01	SLAAYLNSL	0.8963	0.9737	1.7015	68.81	0.3488	11.33	1/982	1/7748
SNV	Breast	ACACB_E1417Q_3	HLA-C07:02	LRQEPIHIL	0.8263	0.9727	0.0301	13.16	0.0597	1.42	1/982	1/7748
SNV	Breast	AGGF1_E636Q_7	HLA-C16:01	MGWKKGQGL	0.8747	0.9737	1.0009	129.18	0.478	42.21	1/982	1/7748
SNV	Breast	ALDOA_S160L_7	HLA-C16:01	IGEHTPLAL	0.8312	0.9827	0.6254	362.23	0.747	1345.44	1/982	1/7748
SNV	Breast	AP3M1_E245G_4	HLA-B44:03	WESGRVLSF	0.9946	0.9524	0.0391	13.42	0.1383	476.23	1/982	1/7748
SNV	Breast	AP3M1_E245G_6	HLA-C07:02	KRWESGRVL	0.9054	0.937	0.1019	12.52	0.0578	476.23	1/982	1/7748
SNV	Breast	ASH1L_E1496Q_3	HLA-C16:01	SSQQPQVSM	0.7097	0.9747	0.0756	15.4	0.1424	36.6	1/982	1/7748
SNV	Breast	BRD7_D461N_7	HLA-C16:01	YPYVMANSL	0.7687	0.9592	1.4525	48.16	0.2837	16.97	1/982	1/7748
SNV	Breast	BRD7_D461N_3	HLA-C16:01	MANSLLDVL	0.9744	0.977	0.2141	48.25	0.284	16.97	1/982	1/7748
SNV	Breast	C5orf49_I133M_6	HLA-C07:02	YRKNDMPSL	0.8788	0.9741	0.1184	11.52	0.0547	1.91	1/982	1/7748
SNV	Breast	CHST1_R248C_5	HLA-B44:03	SETFCDTYRLW	0.9998	0.9047	0.3695	9.11	0.1184	2.01	1/982	1/7748
SNV	Breast	CPSF4_R168Q_6	HLA-C07:02	KFMHPQFEL	0.7463	0.9814	0.3459	110.81	0.2046	16.37	1/982	1/7748
SNV	Breast	DDHD1_R156C_2	HLA-C16:01	HCYEVVTEL	0.894	0.9867	0.4516	83.92	0.3892	4.51	1/982	1/7748
SNV	Breast	DNAH2_E4152Q_4	HLA-C07:02	TREQKVLEL	0.963	0.9732	0.1256	37.48	0.1119	3.81	1/982	1/7748
SNV	Breast	DPP3_G585E_8	HLA-C16:01	VLLEAGEEL	0.7202	0.9916	1.0139	477.93	0.8292	115.11	1/982	1/7748
SNV	Breast	EIF4B_E134Q_9	HLA-B07:02	LPREPSNPQRL	0.9999	0.5165	0.1588	15.77	0.1429	261.64	1/982	1/7748
SNV	Breast	FAM171A1_Q632H_9	HLA-A03:01	GIFPHPSSH	0.9678	0.6064	0.4379	72.36	0.2519	2.46	1/982	1/7748
SNV	Breast	FAM171A1_Q632H_3	HLA-C16:01	SSHIQPQPL	0.9324	0.9725	0.0969	42.75	0.2671	2.46	1/982	1/7748
SNV	Breast	GPRC5A_S336Y_4	HLA-B44:03	KEFYIPRAHAW	0.9986	0.9679	0.0488	5.32	0.0907	90.33	1/982	1/7748
SNV	Breast	GSE1_G981E_5	HLA-B44:03	SEAPEGKKSL	0.9898	0.9855	0.232	70.52	0.2575	45.35	1/982	1/7748
SNV	Breast	GSE1_G981E_3	HLA-B07:02	APEGKKSL	0.9994	0.5756	0.548	455.29	0.3937	45.35	1/982	1/7748
SNV	Breast	ITGAV_E422K_1	HLA-C16:01	KGQWAARSM	0.7739	0.9762	1.1786	352.25	0.7391	48.97	1/982	1/7748
SNV	Breast	KCTD3_R514T_8	HLA-C16:01	ITNKLFVTL	0.9925	0.9811	0.1095	8.33	0.0849	169.66	1/982	1/7748
SNV	Breast	KIAA1033_S472L_9	HLA-C16:01	MQKPMTKTL	0.8813	0.9719	0.7645	136.89	0.49	36	1/982	1/7748
SNV	Breast	KIAA1033_S472L_5	HLA-C16:01	MTKTLVKAL	0.9092	0.9526	0.1709	103.28	0.4319	36	1/982	1/7748
SNV	Breast	KIF1B_R1320W_9	HLA-B44:03	RELVVGRIW	0.9988	0.8076	0.0243	1.39	0.0149	15.51	1/982	1/7748
SNV	Breast	LTA4H_Q99E_1	HLA-B44:03	EEIVIEISF	0.9984	0.9091	0.0262	2.21	0.0432	68.46	1/982	1/7748
SNV	Breast	LTA4H_Q99E_2	HLA-B44:03	NEEIVIEISF	0.9986	0.907	0.1353	224.08	0.3459	68.46	1/982	1/7748
SNV	Breast	LTA4H_Q99E_7	HLA-C16:01	IALSKNEEI	0.7372	0.9646	0.4239	349.68	0.737	68.46	1/982	1/7748
SNV	Breast	MLLT10_S422L_5	HLA-C16:01	IGLPLTSAV	0.7091	0.9895	1.3599	176.51	0.5495	14.07	1/982	1/7748
SNV	Breast	NLRC3_L998V_7	HLA-C16:01	KALANAVKV	0.8642	0.9794	0.3006	64.39	0.3353	1.79	1/982	1/7748
SNV	Breast	NLRC3_L998V_3	HLA-C16:01	NAVKVNSSL	0.937	0.9497	0.1804	116.25	0.4563	1.79	1/982	1/7748
SNV	Breast	PCDHA4_P643A_2	HLA-B07:02	AARHRLLVL	0.9727	0.5826	0.1069	115.4	0.2753	1.05	1/982	1/7748
SNV	Breast	PCDHA4_P643A_2	HLA-C16:01	AARHRLLVL	0.632	0.9699	0.1579	12.38	0.118	1.05	1/982	1/7748
SNV	Breast	PCDHA4_P643L_9	HLA-C16:01	RALDETDAL	0.9751	0.9836	0.1253	10.95	0.1071	1.05	1/982	1/7748
SNV	Breast	PCDHA4_Q30E_7	HLA-B44:03	WEAGNGELHY	0.9801	0.9656	0.0993	35.59	0.1961	1.05	1/982	1/7748
SNV	Breast	PCDHA4_S179F_10	HLA-C07:02	YRLSPNEYFF	0.999	0.9401	0.1108	102.71	0.1968	1.05	1/982	1/7748
SNV	Breast	PCDHB14_E729K_3	HLA-B07:02	VPKGPFPGHL	0.9988	0.5389	0.0958	16.78	0.146	4.12	1/982	1/7748
SNV	Breast	PIGW_S381R_5	HLA-C16:01	IVASRLILL	0.9825	0.9834	0.4879	20.19	0.1708	15.62	1/982	1/7748
SNV	Breast	PIGW_S381R_2	HLA-C07:02	SRLILLSSL	0.9563	0.9197	0.0926	82.9	0.176	15.62	1/982	1/7748
SNV	Breast	PPM1B_S318L_9	HLA-B44:03	SELDKHLEL	0.9982	0.9869	0.1155	9.27	0.1193	22.92	1/982	1/7748
SNV	Breast	PREP_F652L_9	HLA-C16:01	VVPLHSLKL	0.6936	0.9839	0.5269	294.53	0.6881	25.24	1/982	1/7748
SNV	Breast	PREP_F652L_5	HLA-C16:01	HSLKLIATL	0.9916	0.99	0.1031	8.65	0.0894	25.24	1/982	1/7748
SNV	Breast	RBM42_E230Q_1	HLA-B07:02	QPAAPREL	0.9994	0.6394	0.2153	27.47	0.1724	36.57	1/982	1/7748
SNV	Breast	RBM42_E230Q_1	HLA-B07:02	QPAAPRELGL	0.9985	0.5035	0.1208	7.75	0.0948	36.57	1/982	1/7748
SNV	Breast	RPS6KB2_L447V_5	HLA-B44:03	TELPVPPLL	0.9907	0.9848	0.1128	10.41	0.1257	42.46	1/982	1/7748
SNV	Breast	SLC44A1_E283Q_3	HLA-C16:01	IAQDNLRAL	0.9841	0.9811	0.0668	3.39	0.0291	20.21	1/982	1/7748
SNV	Breast	SMG7_R531Q_7	HLA-C16:01	SVLSTSQNL	0.9171	0.9844	1.4961	83.74	0.3888	57.82	1/982	1/7748
SNV	Breast	TOPORS_S282L_5	HLA-C07:02	YRDILAEF	0.9997	0.9066	0.1631	119.13	0.2125	21.41	1/982	1/7748
SNV	Breast	TOPORS_S282L_6	HLA-C07:02	RYRDILAEF	0.9088	0.9601	0.0606	4.6	0.0172	21.41	1/982	1/7748
SNV	Breast	TOPORS_S282L_5	HLA-C07:02	YRDILAEFF	0.8912	0.9103	0.052	25.64	0.0894	21.41	1/982	1/7748
SNV	Breast	TOPORS_S282L_7	HLA-C07:02	GRYRDILAEF	0.9989	0.9602	0.1184	144.71	0.2334	21.41	1/982	1/7748
SNV	Breast	TUBA1B_I188F_9	HLA-C16:01	AVVEPYNSF	0.7868	0.9684	0.1095	12.48	0.1188	229.28	1/982	1/7748
SNV	Breast	TUBA1B_I188F_8	HLA-C16:01	VVEPYNSFL	0.6366	0.9618	1.1405	478.24	0.8295	229.28	1/982	1/7748
SNV	Breast	TUBA1B_I188F_9	HLA-C07:02	AVVEPYNSF	0.6168	0.9723	1.412	363.89	0.3505	229.28	1/982	1/7748
SNV	Breast	USP54_S694L_2	HLA-A03:01	RLAGLVPSWR	0.9975	0.5499	0.2238	452.48	0.4884	85.16	1/982	1/7748
SNV	Breast	USP54_S694L_9	HLA-C07:02	YRDPSAKRL	0.8692	0.953	0.0791	5.74	0.0259	85.16	1/982	1/7748
SNV	Breast	ZBTB3_A153T_8	HLA-B44:03	VEDVLAATSY	0.9788	0.9712	0.0897	27.95	0.1756	8.48	1/982	1/7748
SNV	Breast	ZBTB3_A153T_4	HLA-C16:01	LAATSYLHM	0.8425	0.986	0.0541	199.07	0.5784	8.48	1/982	1/7748
SNV	Breast	ADSS_I384M_6	HLA-A02:01	KLDGEMIPHI	0.9959	0.542	0.4984	12.95	0.1798	71.88	1/982	1/7748
SNV	Breast	ADSS_I384M_3	HLA-B45:01	GEMIPHIPA	0.9993	0.901	0.0138	4	0.0188	71.88	1/982	1/7748
SNV	Breast	ADSS_I384M_9	HLA-C16:01	VAYKLDGEM	0.7641	0.9715	0.1472	238.23	0.6262	71.88	1/982	1/7748
SNV	Breast	ADSS_I384M_9	HLA-C03:03	VAYKLDGEM	0.9958	0.9848	0.215	48.77	0.1994	71.88	1/982	1/7748
SNV	Breast	CHD3_A1937T_3	HLA-C16:01	FSTAPVGAL	0.9465	0.9802	0.0431	23.91	0.187	53.32	1/982	1/7748
SNV	Breast	CHD3_A1937T_3	HLA-C03:03	FSTAPVGAL	0.9996	0.9944	0.0131	7.47	0.066	53.32	1/982	1/7748
SNV	Breast	DHTKD1_R417C_7	HLA-C16:01	LAFEYQCQF	0.7504	0.9543	0.0255	445.34	0.8064	32.61	1/982	1/7748
SNV	Breast	DNA2_S230L_2	HLA-A02:01	TLTDFPQMQL	0.9777	0.7194	0.8054	39.81	0.2796	9.33	1/982	1/7748
SNV	Breast	DNA2_S230L_1	HLA-C16:01	LTDFPQMQL	0.8595	0.9946	0.2141	341.81	0.7306	9.33	1/982	1/7748
SNV	Breast	DYNC1H1_N529D_6	HLA-A02:01	NLAYEDVKEV	0.8919	0.7819	1.9497	225.64	0.5265	108.87	1/982	1/7748
SNV	Breast	DYNC1H1_N529D_5	HLA-C16:01	LAYEDVKEV	0.8431	0.9865	0.3277	190.85	0.5683	108.87	1/982	1/7748
SNV	Breast	DYNC1H1_N529D_5	HLA-C03:03	LAYEDVKEV	0.9974	0.9919	0.1688	23.52	0.1512	108.87	1/982	1/7748
SNV	Breast	MAML1_P585L_9	HLA-B45:01	QEQNPSSVL	0.8662	0.8658	0.1206	73.42	0.1766	15.83	1/982	1/7748
SNV	Breast	MAML1_P585L_9	HLA-B45:01	QEQNPSSVLV	0.992	0.8824	0.1394	120.15	0.2174	15.83	1/982	1/7748
SNV	Breast	MBD6_M110V_5	HLA-C16:01	KAVAVATL	0.9981	0.9864	0.667	152.94	0.515	27.63	1/982	1/7748
SNV	Breast	MBD6_M110V_5	HLA-C16:01	KAVAVATLY	0.5784	0.9794	0.0756	131.08	0.4811	27.63	1/982	1/7748
SNV	Breast	MBD6_M110V_2	HLA-C16:01	AVATLYRSM	0.8987	0.983	0.8582	74.09	0.3639	27.63	1/982	1/7748
SNV	Breast	MDN1_E2201Q_8	HLA-B45:01	AEFAKLVQEF	0.9454	0.974	0.4963	185.42	0.2552	6.38	1/982	1/7748
SNV	Breast	NSUN6_H89Y_4	HLA-A02:01	ILQYPDLQDV	0.9551	0.5093	1.3298	49.33	0.3007	6.04	1/982	1/7748
SNV	Breast	PALD1_V33I_9	HLA-C16:01	GTMDSRHSI	0.867	0.9791	1.3599	66.27	0.3412	8.84	1/982	1/7748
SNV	Breast	RBM27_H725R_3	HLA-C16:01	TVRGGIQKM	0.5041	0.9712	0.3639	155.41	0.5189	15.76	1/982	1/7748
SNV	Breast	TPR_V2222M_5	HLA-C16:01	VAAPMTVF	0.9959	0.9761	0.3356	224.49	0.6089	27.11	1/982	1/7748
SNV	Breast	TPR_V2222M_6	HLA-C16:01	QVAAPMTVF	0.7277	0.9922	0.7424	38.99	0.2542	27.11	1/982	1/7748
SNV	Breast	TPR_V2222M_6	HLA-C03:03	QVAAPMTVF	0.9879	0.9938	1.0384	317.86	0.4293	27.11	1/982	1/7748
SNV	Breast	TSG101_M131V_6	HLA-A02:01	GLIQVVIVV	0.9896	0.5001	0.1953	10.31	0.1611	52.54	1/982	1/7748
SNV	Breast	TTYH2_A400S_4	HLA-A02:01	FLASLAFST	0.9887	0.5855	0.0495	141.69	0.4483	2.76	1/982	1/7748
SNV	Breast	TTYH2_A400S_6	HLA-C16:01	FSFLASLAF	0.8412	0.9878	0.0149	20.34	0.1716	2.76	1/982	1/7748
SNV	Breast	TTYH2_A400S_3	HLA-C16:01	LASLAFSTM	0.9373	0.9866	0.028	26.8	0.1978	2.76	1/982	1/7748
SNV	Breast	TTYH2_A400S_6	HLA-C03:03	FSFLASLAF	0.9879	0.9949	0.0675	48.62	0.1992	2.76	1/982	1/7748
SNV	Breast	TTYH2_A400S_3	HLA-C03:03	LASLAFSTM	0.9993	0.9892	0.0452	21.79	0.1453	2.76	1/982	1/7748
SNV	Breast	WHSC1_D430G_4	HLA-B45:01	AEAGPRRGV	0.9987	0.916	0.1363	31.56	0.1173	20.51	1/982	1/7748
SNV	Breast	ARG2_V297A_7	HLA-A02:01	ALDLVEANPQL	0.9909	0.5821	1.3724	92.56	0.3816	1.51	1/982	1/7748
SNV	Breast	ARG2_V297A_7	HLA-C05:01	ALDLVEANPQL	1	0.9565	0.346	482.35	0.3988	1.51	1/982	1/7748
SNV	Breast	MACC1_R252M_6	HLA-B18:01	QEVSLMAF	0.9982	0.9414	0.0558	22.78	0.0874	5.4	1/982	1/7748
SNV	Breast	MACC1_R252M_9	HLA-B18:01	GEFQEVSLM	0.9389	0.9086	0.1059	23.01	0.0877	5.4	1/982	1/7748
SNV	Breast	MACC1_R252M_1	HLA-C02:02	MAFLDPPHM	0.7203	0.9672	0.0441	62.24	0.1228	5.4	1/982	1/7748
SNV	Breast	MACC1_R252M_1	HLA-C02:02	MAFLDPPHML	0.9926	0.9779	0.4785	397.74	0.4055	5.4	1/982	1/7748
SNV	Breast	PRMT2_E33K_1	HLA-B18:01	KEFVAIADY	0.9862	0.92	0.0574	29.52	0.0977	39.06	1/982	1/7748
SNV	Breast	RBM12B_H762P_8	HLA-B27:05	FRRPPPEPF	0.9763	0.6607	0.048	45.05	0.3222	12.21	1/982	1/7748
SNV	Breast	RBM12B_H762P_7	HLA-B27:05	RRPPPEPFR	0.9964	0.6191	0.2732	473.27	0.5941	12.21	1/982	1/7748
SNV	Breast	ZBTB14_A432V_6	HLA-B18:01	TEQLQVAAM	0.9855	0.9522	0.0481	10.56	0.064	29.21	1/982	1/7748
SNV	Breast	BOD1L1_E487Q_7	HLA-C05:01	YSDSDDQLTV	0.9999	0.9651	0.0819	25.34	0.1342	14.47	1/982	1/7748
SNV	Breast	DAB2IP_E189K_5	HLA-B58:01	RSAAKRDKW	0.9919	0.8753	0.0623	1.6	0.0213	13.36	1/982	1/7748
SNV	Breast	HERC5_R407W_8	HLA-B58:01	IADVETKW	0.9995	0.9311	0.4096	72.95	0.3513	38.87	1/982	1/7748
SNV	Breast	HERC5_R407W_9	HLA-B58:01	WIADVETKW	0.9885	0.9804	0.0791	3.87	0.0694	38.87	1/982	1/7748
SNV	Breast	HERC5_R407W_8	HLA-B58:01	IADVETKWW	0.9959	0.9657	0.1515	20.61	0.207	38.87	1/982	1/7748
SNV	Breast	HERC5_R407W_10	HLA-B58:01	RWIADVETKW	0.9867	0.9882	0.6695	3.28	0.0612	38.87	1/982	1/7748
SNV	Breast	HERC5_R407W_11	HLA-B58:01	KRWIADVETKW	0.9995	0.9745	1.6811	35.39	0.258	38.87	1/982	1/7748
SNV	Breast	IGHV2-26_S56N_8	HLA-B58:01	SNARMGVNW	0.973	0.8846	0.3296	91.4	0.381	660.65	1/982	1/7748
SNV	Breast	IGHV2-26_S56N_9	HLA-B58:01	LSNARMGVNW	0.9991	0.8989	0.2064	28.54	0.2364	660.65	1/982	1/7748
SNV	Breast	PDE4DIP_R1875W_9	HLA-B58:01	RLREQLEHW	0.9974	0.9818	0.1613	6.03	0.1012	6.75	1/982	1/7748
SNV	Breast	RHEB_G29S_6	HLA-A02:05	IQFVESQFV	0.9809	0.6734	0.4164	495.24	0.5068	20.68	1/982	1/7748
SNV	Breast	SUCNR1_T42A_9	HLA-A02:05	FVVGVLGNA	0.9709	0.7279	0.1958	306.66	0.4128	1.44	1/982	1/7748
SNV	Breast	SUCNR1_T42A_6	HLA-A02:01	GVLGNAIVV	0.9805	0.8599	1.2279	311.21	0.5786	1.44	1/982	1/7748
SNV	Breast	USO1_M259I_7	HLA-B58:01	GSYIQRIKPW	0.997	0.8013	0.795	122.85	0.4216	140.26	1/982	1/7748
SNV	Breast	USO1_M259I_3	HLA-C07:01	QRIKPWFEV	0.9871	0.7492	0.1515	486.09	0.1726	140.26	1/982	1/7748
SNV	Breast	ABCA1_V727L_5	HLA-A32:01	SVFALVTIL	0.8666	0.9199	0.2054	130.38	0.1652	6.44	1/982	1/7748
SNV	Breast	ACRC_N530I_6	HLA-C04:01	IYDLFIRSV	0.9989	0.6413	0.0273	24.8	0.0397	2.04	1/982	1/7748
SNV	Breast	AGPAT3_D282V_7	HLA-A32:01	KLYQEKVAL	0.9833	0.9784	0.1609	16.08	0.0523	45.31	1/982	1/7748
SNV	Breast	ANAPC1_P517T_4	HLA-B35:01	LPATSLTM	0.9841	0.8137	0.9038	332.65	0.4376	6.95	1/982	1/7748
SNV	Breast	ANAPC1_P517T_7	HLA-B35:01	IPGLPATSL	0.9851	0.9261	0.2084	224.99	0.3905	6.95	1/982	1/7748
SNV	Breast	ASAP3_A679E_4	HLA-B35:01	QAQEGTFAF	0.9597	0.977	0.0064	1.67	0.0284	40.31	1/982	1/7748
SNV	Breast	ATP5F1_G52V_6	HLA-B35:01	LPEYGVKVRY	0.9938	0.8948	0.5604	11.37	0.139	157.6	1/982	1/7748
SNV	Breast	BTD_E477D_4	HLA-B35:01	EITDATGIF	0.6662	0.8586	1.1939	476.28	0.4829	38.42	1/982	1/7748
SNV	Breast	C22orf23_F16Y_1	HLA-C07:02	YRRRPKTITY	0.9833	0.8834	0.4923	135.35	0.2262	1.64	1/982	1/7748
SNV	Breast	CCT6B_C343Y_1	HLA-B35:01	YLGHAGLVY	0.7595	0.926	0.2356	491.53	0.4869	2.92	1/982	1/7748
SNV	Breast	CCT6B_C343Y_9	HLA-C04:01	SFEDLTVDYL	0.9987	0.704	0.1541	254.33	0.1124	2.92	1/982	1/7748
SNV	Breast	CDC16_Q470H_7	HLA-C04:01	ALDYHRHAL	0.9999	0.692	0.0455	214.68	0.1044	447.06	1/982	1/7748
SNV	Breast	CGNL1_T513I_2	HLA-A03:01	AISPDSGAK	0.9923	0.7982	0.3603	83.76	0.2651	4.19	1/982	1/7748
SNV	Breast	CGNL1_T513I_2	HLA-A03:01	AISPDSGAKK	0.9951	0.7518	0.2619	19.78	0.1351	4.19	1/982	1/7748
SNV	Breast	CMKLR1_S357T_7	HLA-A32:01	RSFTKMTSM	0.9942	0.9578	0.0623	213.51	0.2057	10.4	1/982	1/7748
SNV	Breast	CMKLR1_S357T_7	HLA-C07:02	RSFTKMTSM	0.9967	0.9346	0.7252	414.4	0.3697	10.4	1/982	1/7748
SNV	Breast	COL6A1_L645M_1	HLA-B35:01	MSRDELVKF	0.9599	0.8669	0.1941	339.36	0.4402	324.87	1/982	1/7748
SNV	Breast	CPS1_I398M_9	HLA-C04:01	LFDSFFSLM	0.9982	0.7215	0.0079	4.24	0.0106	5.07	1/982	1/7748
SNV	Breast	CPS1_I398M_10	HLA-C04:01	YLFDSFFSLM	0.9958	0.6199	1.613	293.63	0.1191	5.07	1/982	1/7748
SNV	Breast	CSRNP1_C109W_7	HLA-B35:01	VPSRGGWTL	0.8484	0.7885	0.1238	16.27	0.1636	32.9	1/982	1/7748
SNV	Breast	CSRNP1_C109W_5	HLA-C07:02	SRGGWTLGM	0.8024	0.963	0.1631	161.63	0.2453	32.9	1/982	1/7748
SNV	Breast	CX3CR1_I186M_8	HLA-B35:01	YPEVLQEM	0.9771	0.9207	0.8061	91.52	0.2985	1.25	1/982	1/7748
SNV	Breast	CX3CR1_I186M_8	HLA-B35:01	YPEVLQEMW	0.9956	0.8969	0.5769	119.56	0.3257	1.25	1/982	1/7748
SNV	Breast	CX3CR1_I186M_9	HLA-C07:02	DYPEVLQEM	0.5535	0.9534	0.5212	411.38	0.3686	1.25	1/982	1/7748
SNV	Breast	DNAJA3_D206E_4	HLA-B35:01	TVFEQPQEY	0.987	0.8515	0.0867	1.78	0.0315	54.41	1/982	1/7748
SNV	Breast	DNAJA3_D206E_4	HLA-C07:02	TVFEQPQEY	0.703	0.9447	1.0599	422.09	0.3724	54.41	1/982	1/7748
SNV	Breast	DNAJA3_D206E_3	HLA-C04:01	VFEQPQEYF	0.9816	0.785	0.0673	6.36	0.0149	54.41	1/982	1/7748
SNV	Breast	EEF2_I205M_2	HLA-C04:01	MMDPVLGTV	0.9994	0.9708	0.024	217.25	0.105	3399.48	1/982	1/7748
SNV	Breast	ERMARD_P351S_8	HLA-B35:01	LPLFLGESAM	0.9941	0.8272	0.2595	163.53	0.3578	25.31	1/982	1/7748
SNV	Breast	EVPL_P1806A_4	HLA-B35:01	SPAAQSTSF	0.9943	0.7747	0.0181	1.34	0.0185	53.65	1/982	1/7748
SNV	Breast	EVPL_P1806A_4	HLA-B35:01	SPAAQSTSFF	0.9904	0.7776	0.1739	123.48	0.329	53.65	1/982	1/7748
SNV	Breast	EVPL_P1806A_4	HLA-B07:02	SPAAQSTSFF	0.9965	0.5174	0.2125	24.6	0.1664	53.65	1/982	1/7748
SNV	Breast	GYS1_I432M_1	HLA-C07:02	MFATQRQSF	0.8986	0.9533	0.2575	92.02	0.1861	36.44	1/982	1/7748
SNV	Breast	HSD11B1_G45V_2	HLA-A32:01	KVIGREMAY	0.9816	0.7982	0.2087	13.14	0.0465	1.48	1/982	1/7748
SNV	Breast	HSD11B1_G45V_2	HLA-B35:01	KVIGREMAY	0.9758	0.8761	0.279	78.86	0.2851	1.48	1/982	1/7748
SNV	Breast	KIF1B_Q617E_8	HLA-C07:02	KRVSQPVEL	0.9795	0.9209	0.0323	15.01	0.0655	30.68	1/982	1/7748
SNV	Breast	LSR_S447F_3	HLA-B07:02	RPFRGPAL	0.9999	0.8037	0.0933	1.61	0.024	154.34	1/982	1/7748
SNV	Breast	LSR_S447F_4	HLA-C07:02	SRPFRGPAL	0.8374	0.8897	0.0899	16.04	0.0684	154.34	1/982	1/7748
SNV	Breast	NF1_S1352G_4	HLA-A32:01	AIIGSSSEF	0.9514	0.9522	0.5165	145.9	0.1759	8.29	1/982	1/7748
SNV	Breast	NF1_S1352G_5	HLA-B35:01	HAIIGSSSEF	0.9958	0.8538	0.218	390.68	0.4579	8.29	1/982	1/7748
SNV	Breast	PGAP1_L721F_9	HLA-B35:01	LALKRPSEF	0.9592	0.8939	0.2509	284.55	0.4179	2.55	1/982	1/7748
SNV	Breast	PIK3C2B_S1356C_4	HLA-C07:02	SFACRTHTL	0.5982	0.8908	0.484	253.29	0.2977	21.28	1/982	1/7748
SNV	Breast	PLAT_Q24H_4	HLA-B35:01	SPSHEIHARF	0.9748	0.7574	0.3912	41.84	0.2303	20.45	1/982	1/7748
SNV	Breast	PLCB2_S450R_5	HLA-B07:02	VPLPRPEDL	0.9974	0.5626	0.1069	18.9	0.1522	8.32	1/982	1/7748
SNV	Breast	PODXL2_G128V_9	HLA-B35:01	FPDLTEKAV	0.955	0.8593	0.3389	121.81	0.3276	45.99	1/982	1/7748
SNV	Breast	PPIL2_F381L_6	HLA-C07:02	NRSQFLITF	0.8657	0.8829	0.024	14.08	0.0627	19.38	1/982	1/7748
SNV	Breast	PRDM2_S1297C_3	HLA-B35:01	YPCFKPPPF	0.9978	0.7589	0.0296	30.17	0.204	19.84	1/982	1/7748
SNV	Breast	PRDM2_S1297C_3	HLA-B35:01	YPCFKPPPFQY	0.9994	0.6718	0.3595	17.85	0.1691	19.84	1/982	1/7748
SNV	Breast	REEP1_G83D_6	HLA-B35:01	SPYTKDSSL	0.9162	0.6531	0.4839	156.02	0.353	55.5	1/982	1/7748
SNV	Breast	REEP1_G83D_4	HLA-B35:01	YTKDSSLLY	0.9574	0.7143	0.1624	10.72	0.1341	55.5	1/982	1/7748
SNV	Breast	REEP1_G83D_6	HLA-B35:01	SPYTKDSSLLY	0.9983	0.5566	0.3529	16.22	0.1634	55.5	1/982	1/7748
SNV	Breast	SYNE2_E513D_3	HLA-C07:02	SRDSVELLL	0.9347	0.9649	0.0969	75.46	0.1681	9.42	1/982	1/7748
SNV	Breast	TARDBP_A321V_8	HLA-B35:01	GAFSINPVM	0.983	0.9462	0.2676	260.95	0.407	64.69	1/982	1/7748
SNV	Breast	TIMM23B_E74Q_7	HLA-A32:01	KTWGRFQLAF	0.9979	0.9612	0.3611	35.1	0.087	10.05	1/982	1/7748
SNV	Breast	TRIM56_R509G_5	HLA-C07:02	KRSPGITGL	0.812	0.9622	0.028	15.96	0.0682	26.98	1/982	1/7748
SNV	Breast	ZMPSTE24_S352G_4	HLA-A32:01	IIIGQMNSF	0.9517	0.934	0.4136	25.57	0.0703	98.79	1/982	1/7748
SNV	Breast	ZMPSTE24_S352G_4	HLA-B35:01	IIIGQMNSF	0.9813	0.8876	0.4432	442.06	0.4735	98.79	1/982	1/7748
SNV	Breast	ZNF7_N565S_6	HLA-A32:01	KAFSQSSTL	0.9797	0.937	0.0101	107.07	0.1477	9.54	1/982	1/7748
SNV	Breast	AP4B1_L600F_9	HLA-C12:02	SSFAASGPF	0.7526	0.9852	0.0973	444.91	0.4452	6.29	1/982	1/7748
SNV	Breast	CBLN4_S74L_9	HLA-C12:02	AANSKVAFL	0.9844	0.9541	0.1772	398.23	0.4221	1.99	1/982	1/7748
SNV	Breast	CLPX_D280V_7	HLA-C05:01	VLDSSHVDI	0.9997	0.8137	0.0419	4.14	0.0487	16.49	1/982	1/7748
SNV	Breast	EXOC6_D75H_3	HLA-C05:01	FVHAITELL	0.787	0.9683	0.377	148.11	0.2541	14.63	1/982	1/7748
SNV	Breast	EXOC6_D75H_3	HLA-C12:02	FVHAITELL	0.9854	0.9722	0.0109	35.47	0.0902	14.63	1/982	1/7748
SNV	Breast	MBD6_G766V_6	HLA-C05:01	LLQPPVPLL	0.9985	0.9966	0.0943	4.95	0.0562	37.19	1/982	1/7748
SNV	Breast	MTOR_I2500F_5	HLA-B52:01	KAIQFINRV	0.7624	0.8796	0.6266	209.85	0.0288	12.84	1/982	1/7748
SNV	Breast	SAMD9_S526L_9	HLA-C05:01	ASDVRKLIL	0.9999	0.9776	0.049	65.47	0.1884	11	1/982	1/7748
SNV	Breast	CHD1L_W852C_4	HLA-A31:01	GFNCYGTER	0.9626	0.5169	0.5415	375.13	0.3824	32.37	1/982	1/7748
SNV	Breast	ERBB2_G309A_7	HLA-A02:01	YLSTDVASC	0.9414	0.5075	0.8791	310.98	0.5785	164.59	1/982	1/7748
SNV	Breast	GNPTAB_S163P_8	HLA-A02:01	SLYPSFHPA	0.9917	0.5874	0.0279	5.93	0.1167	12.27	1/982	1/7748
SNV	Breast	RAE1_N324S_1	HLA-C07:01	SHNGNIFAY	0.879	0.5279	0.378	321.3	0.1428	25.75	1/982	1/7748
SNV	Breast	ADAMTSL1_N1716T_9	HLA-B57:01	CSWGPRPATW	0.9999	0.9715	0.0503	48.95	0.2303	1.1	1/982	1/7748
SNV	Breast	COL1A1_P640T_9	HLA-B44:02	GEQGPAGSTGF	0.9929	0.7126	0.0899	290.91	0.354	2906.62	1/982	1/7748
SNV	Breast	COL5A2_R1453W_10	HLA-B57:01	IVLQDTCSKW	0.9996	0.9795	0.1263	44.71	0.2233	347.88	1/982	1/7748
SNV	Breast	LRIG3_C817W_9	HLA-B57:01	GVVIIAVVW	0.8207	0.997	0.387	128.3	0.301	8.18	1/982	1/7748
SNV	Breast	PIK3CA_E545K_3	HLA-B57:01	ITKQEKDFLW	1	0.9568	0.0602	3.56	0.0443	13.3	4/982	14/7748
SNV	Breast	PITRM1_Q933L_7	HLA-B57:01	NTIETLLSF	0.9295	0.9376	0.1653	266.17	0.4067	35.04	1/982	1/7748
SNV	Breast	PITRM1_Q933L_1	HLA-B57:01	LSFGKAVDW	0.9997	0.9769	0.0153	2.56	0.031	35.04	1/982	1/7748
SNV	Breast	YTHDF3_I437M_7	HLA-B57:01	RSIKYSMW	0.9995	0.9437	0.452	6.68	0.0799	106.93	1/982	1/7748
SNV	Breast	ACSF3_Q112K_6	HLA-A24:02	SYVVAKWASW	0.991	0.813	0.3595	60.2	0.386	8.28	1/982	1/7748
SNV	Breast	BAZ1A_M1082V_6	HLA-A24:02	VHYLAVALF	0.9537	0.5737	0.4853	70.63	0.404	41.67	1/982	1/7748
SNV	Breast	CUL7_L624M_2	HLA-A03:01	RMVEGYGPAGK	0.9997	0.6245	0.2813	450.75	0.4878	62.31	1/982	1/7748
SNV	Breast	CUL7_L624M_9	HLA-B35:01	SPNTPLQRM	0.9853	0.5732	0.2931	27.8	0.1979	62.31	1/982	1/7748
SNV	Breast	CUL7_L624M_6	HLA-B35:01	TPLQRMVEGY	0.9904	0.6682	0.6987	243.28	0.3985	62.31	1/982	1/7748
SNV	Breast	ETV6_P107S_2	HLA-B35:01	SSHSGDVLY	0.9748	0.7085	0.0722	196.28	0.3765	34.76	1/982	1/7748
SNV	Breast	ICE1_N49K_4	HLA-B35:01	NTDKLLTEY	0.772	0.7278	0.7616	125.35	0.3306	23.36	1/982	1/7748
SNV	Breast	LRP1_D1615N_5	HLA-B35:01	VPDINNVTV	0.8161	0.9002	0.4585	174.41	0.3644	94.02	1/982	1/7748
SNV	Breast	LRP1_D1615N_5	HLA-B35:02	VPDINNVTV	0.9597	0.9515	0.0289	8.26	0.0306	94.02	1/982	1/7748
SNV	Breast	LRP1_D1615N_5	HLA-B35:02	VPDINNVTVL	0.8992	0.8921	0.0756	138.71	0.1108	94.02	1/982	1/7748
SNV	Breast	MANEA_A389T_9	HLA-C04:01	YYEIGLSATL	0.9989	0.8045	0.2465	332.44	0.1249	10.44	1/982	1/7748
SNV	Breast	NSMAF_S690Y_1	HLA-B35:01	YSWDNNVY	0.9762	0.855	1.0411	448.77	0.4754	12.79	1/982	1/7748
SNV	Breast	NSMAF_S690Y_7	HLA-B35:01	DATVITYSW	0.9221	0.766	1.0011	497.37	0.4884	12.79	1/982	1/7748
SNV	Breast	NSMAF_S690Y_1	HLA-B35:01	YSWDNNVYF	0.9869	0.8333	0.049	9.32	0.1233	12.79	1/982	1/7748
SNV	Breast	NSMAF_S690Y_10	HLA-B35:01	LPGDATVITY	0.9945	0.6833	0.0783	1.84	0.0332	12.79	1/982	1/7748
SNV	Breast	NSMAF_S690Y_1	HLA-C04:01	YSWDNNVYF	0.8686	0.6142	0.4615	478.62	0.1516	12.79	1/982	1/7748
SNV	Breast	RIMS1_D1626N_1	HLA-A24:02	NYGRMDHKCF	0.9381	0.5981	0.7592	139.64	0.4995	1.76	1/982	1/7748
SNV	Breast	SASH1_P860L_1	HLA-B35:02	LPPQIVPEV	0.9377	0.9681	0.0516	69.41	0.0874	17.41	1/982	1/7748
SNV	Breast	SYNGAP1_R47W_10	HLA-A24:02	PYDRPGWNPW	0.9746	0.6744	0.7484	346.05	0.6324	5.03	1/982	2/7748
SNV	Breast	XPNPEP3_A413D_5	HLA-B35:01	NAFKDARKY	0.9899	0.7613	0.1404	3.22	0.0619	13.26	1/982	1/7748
SNV	Breast	APH1B_T163M_8	HLA-C03:04	FLYSAFMML	0.9216	0.9882	0.8175	334.43	0.4375	11.82	1/982	1/7748
SNV	Breast	AXIN1_Y286H_3	HLA-C07:01	RRHSEGREF	0.9959	0.6537	0.076	234.57	0.1218	18.59	1/982	1/7748
SNV	Breast	CLIP1_L231F_4	HLA-C07:01	VRFFGETDF	0.9866	0.7956	0.0607	121.37	0.0962	19.31	1/982	1/7748
SNV	Breast	CTSO_P104S_5	HLA-C03:04	HMSISNVSL	0.9953	0.9636	0.5072	357.2	0.4482	51.71	1/982	1/7748
SNV	Breast	HAUS1_D50Y_6	HLA-C07:01	RVRDRYVYL	0.8617	0.5351	1.4596	392.87	0.1577	21.41	1/982	1/7748
SNV	Breast	HAUS1_D50Y_6	HLA-C03:04	RVRDRYVYL	0.7856	0.9843	1.3876	324.56	0.4327	21.41	1/982	1/7748
SNV	Breast	HAUS1_D50Y_1	HLA-C03:04	YVYLVIEDL	0.9916	0.99	1.053	409.18	0.4702	21.41	1/982	1/7748
SNV	Breast	HCN3_R507Q_6	HLA-B15:01	RTASVQADTY	0.9982	0.7848	0.5725	72.04	0.2563	6.63	1/982	1/7748
SNV	Breast	HCN3_R507Q_2	HLA-B15:01	VQADTYCRLY	0.9999	0.6175	0.4353	21.8	0.1474	6.63	1/982	1/7748
SNV	Breast	HEXDC_P396H_8	HLA-B15:01	YVTGWFSHY	0.9934	0.9439	0.0695	476.14	0.511	26.23	1/982	1/7748
SNV	Breast	IGKV2-24_V108D_7	HLA-B15:01	RVEAEDDGVY	0.9752	0.896	0.9808	130.27	0.3154	22.56	1/982	1/7748
SNV	Breast	PDE5A_P109R_8	HLA-C03:04	SASEFDRRL	0.9984	0.9808	0.2916	240.49	0.3866	2.73	1/982	1/7748
SNV	Breast	PHTF1_F559L_7	HLA-B15:01	RTYKQRLLF	0.9465	0.8956	0.3115	21.44	0.1462	6.5	1/982	1/7748
SNV	Breast	RRP15_V188I_2	HLA-B15:01	KIKEAGSSM	0.9991	0.9277	0.2193	12.98	0.1124	14.2	1/982	1/7748
SNV	Breast	SPECC1L_N856K_3	HLA-B08:01	VPKPAAAAI	0.9165	0.5993	0.1611	169.33	0.2185	33.96	1/982	1/7748
SNV	Breast	TRIL_L231F_6	HLA-B08:01	APLRSFSSL	0.9926	0.5888	0.1046	366.4	0.2936	19.65	1/982	1/7748
SNV	Breast	TRIL_L231F_9	HLA-B15:01	ATFAPLRSF	0.9919	0.9506	0.1821	5.22	0.053	19.65	1/982	1/7748
SNV	Breast	TRIL_L231F_9	HLA-C03:04	ATFAPLRSF	0.9801	0.9941	0.585	82.95	0.2551	19.65	1/982	1/7748
SNV	Breast	UBE2O_T1274M_2	HLA-B08:01	LMQFRAAL	0.9988	0.8757	0.1318	352.68	0.2895	39.55	1/982	1/7748
SNV	Breast	UBE2O_T1274M_3	HLA-B08:01	VLMQFRAAL	0.9761	0.8855	0.029	83.35	0.1554	39.55	1/982	1/7748
SNV	Breast	UBE2O_T1274M_7	HLA-B15:01	SIRGVLMQF	0.9989	0.7205	0.0695	52.61	0.2234	39.55	1/982	1/7748
SNV	Breast	UBE2O_T1274M_3	HLA-C03:04	VLMQFRAAL	0.9519	0.9851	1.8875	355.9	0.4476	39.55	1/982	1/7748
SNV	Breast	USP36_V323I_6	HLA-C07:01	HRTSNILTL	0.9994	0.7159	0.0201	3.93	0.0081	26.12	1/982	1/7748
SNV	Breast	USP36_V323I_4	HLA-C03:04	TSNILTLSL	0.9992	0.9887	0.3653	345.57	0.4428	26.12	1/982	1/7748
SNV	Breast	VSIG4_S275R_2	HLA-C07:01	TRAGPGKSL	0.9904	0.8347	0.1348	58.16	0.0705	39.56	1/982	1/7748
SNV	Breast	ZNF385D_A386T_4	HLA-C07:01	IRTTHTPVL	0.997	0.6085	0.073	39.05	0.0565	2.18	1/982	1/7748
SNV	Breast	ZNF462_T1296M_9	HLA-B08:01	HPALKATVM	0.9946	0.8086	0.064	11.58	0.0443	11.66	1/982	1/7748
SNV	Breast	ARMCX1_D439N_7	HLA-A02:01	ALANHNNLV	0.992	0.6005	0.3197	11.32	0.1686	13.24	1/982	1/7748
SNV	Breast	ARMCX1_D439N_1	HLA-B08:01	NLVVKVKVL	0.9956	0.7606	0.0601	8.09	0.0337	13.24	1/982	1/7748
SNV	Breast	ARMCX1_D439N_8	HLA-C03:03	KALANHNNL	0.9978	0.9883	0.3782	46.13	0.1953	13.24	1/982	1/7748
SNV	Breast	ARMCX1_D439N_6	HLA-C03:03	LANHNNLVV	0.9805	0.9908	0.118	109.79	0.2842	13.24	1/982	1/7748
SNV	Breast	P3H2_E321K_5	HLA-B27:05	YRVGKYVKA	0.9994	0.8491	0.6148	419.42	0.5784	1.81	1/982	1/7748
SNV	Breast	P3H2_E321K_5	HLA-B27:05	YRVGKYVKAL	0.9999	0.83	0.6049	69.68	0.3687	1.81	1/982	1/7748
SNV	Breast	P3H2_E321K_5	HLA-C07:01	YRVGKYVKAL	0.9982	0.5515	0.2849	404.99	0.1598	1.81	1/982	1/7748
SNV	Breast	PCSK5_T1409A_9	HLA-A01:01	CLEECPAGAY	0.9814	0.5167	0.1083	455.16	0.6121	1.4	1/982	1/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:05	ARHGGWTTK	0.9983	0.8261	0.1474	11.97	0.2093	18.84	11/982	17/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:05	ARHGGWTTKM	0.9998	0.666	0.0388	24.5	0.2651	18.84	11/982	17/7748
SNV	Breast	SLC7A2_Q472E_3	HLA-B27:05	QREGFSMRTLF	0.9999	0.608	1.1067	466.65	0.5923	1.99	1/982	1/7748
SNV	Breast	TFIP11_D640N_3	HLA-A02:01	VINWEGMISV	0.9767	0.801	0.8095	19.04	0.2132	19	1/982	1/7748
SNV	Breast	TUBGCP4_Q370K_7	HLA-B27:05	GRGELFKAF	0.9995	0.9124	0.23	2.66	0.084	7.22	1/982	1/7748
SNV	Breast	UBAP2L_T553R_1	HLA-C03:03	RASESSSTI	0.9891	0.9872	0.0907	10.96	0.0887	57.37	1/982	1/7748
SNV	Breast	VCP_V71I_8	HLA-B27:05	RREAVCIIL	0.9031	0.9083	0.5088	383.57	0.5668	290.1	1/982	1/7748
SNV	Breast	P2RY6_A207S_7	HLA-C16:01	FLLPFASLL	0.8297	0.9909	0.4427	159.03	0.5244	2.16	1/982	1/7748
SNV	Breast	BMS1_D263N_8	HLA-C12:03	ILADRMENL	0.9983	0.9915	1.3041	150.4	0.6371	23.86	1/982	1/7748
SNV	Breast	BRD7_D461N_7	HLA-B35:03	YPYVMANSL	0.9967	0.7786	0.0144	1.6	0.0049	27.93	1/982	1/7748
SNV	Breast	BRD7_D461N_7	HLA-B35:03	YPYVMANSLL	0.9911	0.7449	0.1078	348.86	0.1592	27.93	1/982	1/7748
SNV	Breast	BRD7_D461N_3	HLA-C12:03	MANSLLDVL	0.9774	0.9821	0.143	50.28	0.3693	27.93	1/982	1/7748
SNV	Breast	GRID1_R692Q_2	HLA-C12:03	FQAKGTNPL	0.9992	0.9687	0.4442	84.6	0.4803	2.68	1/982	1/7748
SNV	Breast	HEATR5B_L916F_9	HLA-C07:02	SRTGHSLAF	0.9103	0.9555	0.0158	6.34	0.0296	25.71	1/982	1/7748
SNV	Breast	KIT_A219V_7	HLA-C12:03	VVSVSKVSY	0.5434	0.9772	0.817	391.39	0.9763	14.96	1/982	1/7748
SNV	Breast	KIT_A219V_6	HLA-C12:03	VSVSKVSYL	0.9976	0.9856	0.0979	19.4	0.2051	14.96	1/982	1/7748
SNV	Breast	KIT_A219V_5	HLA-C12:03	SVSKVSYLL	0.9352	0.9869	1.1249	242.69	0.8058	14.96	1/982	1/7748
SNV	Breast	MCTP2_V729F_9	HLA-C12:03	FIRPVKGKF	0.8401	0.9798	0.3493	55.74	0.3872	2.66	1/982	1/7748
SNV	Breast	MTMR12_Q527P_2	HLA-B35:03	VPFEPKAQTL	0.9796	0.8404	0.0369	57.9	0.0821	33.74	1/982	1/7748
SNV	Breast	MTMR12_Q527P_8	HLA-C12:03	TVWDWSVPF	0.86	0.984	0.5604	120.69	0.5724	33.74	1/982	1/7748
SNV	Breast	NCOA6_S1557L_9	HLA-B35:03	LPHSNELCL	0.9478	0.7157	0.025	61.53	0.0841	18.75	1/982	1/7748
SNV	Breast	NCOA6_S1557L_7	HLA-C12:03	HSNELCLSL	0.9526	0.9817	0.1472	264.27	0.8349	18.75	1/982	1/7748
SNV	Breast	PCSK4_H89N_6	HLA-B07:02	TPHWGNRLHL	0.9984	0.5076	0.0694	10.82	0.1226	1.65	1/982	1/7748
SNV	Breast	RAB34_A187T_6	HLA-B35:03	DALQVTQEM	0.9825	0.8325	0.2519	101.63	0.1035	62.51	1/982	1/7748
SNV	Breast	RSAD2_H78P_8	HLA-B35:03	TPTSVNYPF	0.9634	0.8999	0.0455	47.55	0.0755	29.35	1/982	1/7748
SNV	Breast	SREBF1_R739H_8	HLA-C12:03	RALHFLTHF	0.8859	0.9922	0.0594	51.66	0.374	118.47	1/982	1/7748
SNV	Breast	TOX3_P408L_6	HLA-C12:03	IAANMLSNI	0.9664	0.9715	0.3889	61.99	0.4076	12.15	1/982	1/7748
SNV	Breast	ADORA1_D55V_9	HLA-A02:01	FIVSLAVAV	0.9925	0.5422	0.069	87.38	0.3742	12.33	1/982	1/7748
SNV	Breast	ADORA1_D55V_6	HLA-A02:01	SLAVAVVAV	0.9927	0.8026	0.1073	3.69	0.0773	12.33	1/982	1/7748
SNV	Breast	ADORA1_D55V_3	HLA-C03:04	VAVVAVGAL	0.9991	0.9908	0.0794	14.89	0.1114	12.33	1/982	1/7748
SNV	Breast	ADORA1_D55V_1	HLA-C03:04	VVAVGALVI	0.9426	0.9896	0.693	368.17	0.4531	12.33	1/982	1/7748
SNV	Breast	ALDH1B1_V57F_9	HLA-B15:01	VSKKTFPTF	0.9946	0.8378	0.0869	39.96	0.1949	62.6	1/982	1/7748
SNV	Breast	BIRC6_Q2150L_6	HLA-A02:01	LLSPLLPQL	0.9966	0.7525	0.047	2.17	0.0494	41.27	1/982	1/7748
SNV	Breast	BIRC6_Q2150L_7	HLA-A02:01	NLLSPLLPQL	0.9684	0.6517	0.4216	219.6	0.5221	41.27	1/982	1/7748
SNV	Breast	CXorf36_I292T_2	HLA-A02:01	HTDAGMFGV	0.8657	0.6617	0.6755	326.03	0.5861	7.27	1/982	1/7748
SNV	Breast	NAV1_R371L_2	HLA-A02:01	SLLELVESL	0.9963	0.6977	0.1425	1.26	0.0131	14.61	1/982	1/7748
SNV	Breast	SPATA20_R745H_4	HLA-A02:01	FLSHQLPFL	0.9964	0.6626	0.0005	1.57	0.0304	172.32	1/982	1/7748
SNV	Breast	SPATA20_R745H_1	HLA-B15:01	HQLPFLSTL	0.991	0.721	0.0933	409.3	0.4844	172.32	1/982	1/7748
SNV	Breast	SPATA20_R745H_1	HLA-C03:04	HQLPFLSTL	0.9925	0.9699	0.4259	169.16	0.3384	172.32	1/982	1/7748
SNV	Breast	ZBED1_V327G_5	HLA-B15:01	QQSAGAMY	0.9993	0.9702	0.9734	217.15	0.3821	65.33	1/982	2/7748
SNV	Breast	ZBED1_V327G_6	HLA-B15:01	FQQSAGAMY	0.9995	0.9605	0.0135	2.35	0.0193	65.33	1/982	2/7748
SNV	Breast	ZBED1_V327G_5	HLA-B15:01	QQSAGAMYM	0.9914	0.9781	0.1864	65.01	0.2463	65.33	1/982	2/7748
SNV	Breast	ZBED1_V327G_7	HLA-B15:01	YFQQSAGAMY	0.9933	0.9766	1.1841	8.75	0.0842	65.33	1/982	2/7748
SNV	Breast	ZDBF2_D709Y_9	HLA-B15:01	SSRSSLSSY	0.9997	0.8861	0.0636	10.43	0.099	3.78	1/982	1/7748
SNV	Breast	ZDBF2_D709Y_3	HLA-B15:01	SSYSPASLY	0.9988	0.9093	0.1151	9.08	0.0868	3.78	1/982	1/7748
SNV	Breast	ZDBF2_D709Y_11	HLA-B15:01	VQSSRSSLSSY	0.9999	0.8626	0.3036	231.19	0.3903	3.78	1/982	1/7748
SNV	Breast	ZDBF2_D709Y_4	HLA-C03:04	LSSYSPASL	0.9994	0.9882	0.2379	147.51	0.3196	3.78	1/982	1/7748
SNV	Breast	ZNF266_R394H_8	HLA-C03:04	KAFARSSHL	0.999	0.9854	0.0101	9.48	0.0789	24.73	1/982	1/7748
SNV	Breast	ANKRD11_L1578R_1	HLA-C14:02	RMMTSFERM	0.7086	0.9447	0.6775	246.33	0.7763	14.38	1/982	1/7748
SNV	Breast	FAM160A2_R886L_6	HLA-A02:01	VLQPGLDGA	0.886	0.7939	0.5751	425.27	0.6397	23	1/982	1/7748
SNV	Breast	FAM160A2_R886L_2	HLA-A02:01	GLDGAGLGL	0.9553	0.7392	0.6341	13.07	0.1806	23	1/982	1/7748
SNV	Breast	FBLN7_N425S_4	HLA-A02:01	FQASHVSKV	0.9968	0.7599	0.1166	24.37	0.2341	11.86	1/982	1/7748
SNV	Breast	FECH_F337L_2	HLA-A02:01	ALTSDHIETL	0.9512	0.845	0.8226	49.57	0.3013	29.83	1/982	1/7748
SNV	Breast	FITM2_N215K_4	HLA-C14:02	YFHKLSQKVF	0.8515	0.8052	0.5641	311.16	0.8737	11.18	1/982	1/7748
SNV	Breast	HDDC3_H77P_4	HLA-B13:02	VELPFGAQV	0.9963	0.9823	0.0204	19.21	0.0104	14.22	1/982	1/7748
SNV	Breast	HDDC3_H77P_2	HLA-B51:01	LPFGAQVRRL	0.7861	0.5082	0.3212	234.05	0.3287	14.22	1/982	1/7748
SNV	Breast	HNRNPM_S467F_7	HLA-A02:01	GLDHMAFSI	0.9778	0.5201	0.1794	6.91	0.1282	134.52	1/982	1/7748
SNV	Breast	MED23_P1254L_7	HLA-C14:02	VYHLVGLF	0.9419	0.9763	0.577	495.78	1.0768	23.65	1/982	1/7748
SNV	Breast	MFHAS1_E790V_5	HLA-B13:02	HQYVVGFLL	0.9153	0.7349	0.0165	118.76	0.0581	16.32	1/982	1/7748
SNV	Breast	NGRN_T159P_8	HLA-A03:01	HLRGSGNPSK	0.9944	0.5407	0.3832	77.58	0.2582	16.04	1/982	1/7748
SNV	Breast	SCAP_L288I_8	HLA-A02:01	GVAELIPIV	0.9926	0.6001	0.3693	3.1	0.0682	37.66	1/982	1/7748
SNV	Breast	SLC35B2_K205M_1	HLA-C14:02	MFVSFPTQVL	0.8591	0.9552	0.4474	365.54	0.94	200.18	1/982	1/7748
SNV	Breast	TET1_H525Y_1	HLA-C14:02	YASLGIAQL	0.9913	0.9294	0.2981	51.93	0.3598	1.11	1/982	1/7748
SNV	Breast	TET1_H525Y_2	HLA-C14:02	FYASLGIAQL	0.9447	0.9269	0.3296	51.53	0.3585	1.11	1/982	1/7748
SNV	Breast	TSHZ2_D632Y_7	HLA-C14:02	FSHSEGYSF	0.7848	0.964	0.1336	81.54	0.4524	5.44	1/982	1/7748
SNV	Breast	TSHZ2_D632Y_8	HLA-C14:02	SFSHSEGYSF	0.9306	0.9633	0.3034	357.61	0.9309	5.44	1/982	1/7748
SNV	Breast	ZNF7_K669Q_1	HLA-C14:02	QAFNRSSRL	0.5799	0.9672	1.244	435.96	1.0147	6.2	1/982	1/7748
SNV	Breast	ABCA6_T1559I_8	HLA-B35:01	DVYPLSQIF	0.9832	0.6871	0.2255	8.13	0.1153	1.04	1/982	1/7748
SNV	Breast	ARID1B_K1770T_1	HLA-C04:01	TFDKLPIKI	0.9959	0.6493	0.0024	3.89	0.0098	28.09	1/982	1/7748
SNV	Breast	BMS1_V345L_7	HLA-A01:01	LSGVGGLLY	0.9806	0.5603	0.0333	1.8	0.0574	48.02	1/982	1/7748
SNV	Breast	BMS1_V345L_1	HLA-B35:01	LLYDKDAVY	0.9173	0.6696	0.4875	43.53	0.2334	48.02	1/982	1/7748
SNV	Breast	DUS2_G216A_1	HLA-B35:01	ASHDHIQQY	0.9745	0.7901	0.0867	143.65	0.3445	6.74	1/982	1/7748
SNV	Breast	DYNC2H1_C700S_3	HLA-C04:01	TFSEKVVVL	0.9508	0.8372	0.0297	224.55	0.1065	4.96	1/982	1/7748
SNV	Breast	EPHB6_G203W_4	HLA-A03:01	RSFWPLTQR	0.9756	0.5798	0.0926	4.77	0.0494	1.45	1/982	1/7748
SNV	Breast	EPHB6_G203W_1	HLA-B35:01	WPLTQRGFY	0.9984	0.77	0.0915	190.44	0.3734	1.45	1/982	1/7748
SNV	Breast	FGFR1_R148H_4	HLA-B35:01	KPNHMPVAPY	0.9682	0.6892	0.2676	114.15	0.321	287.08	1/982	1/7748
SNV	Breast	MCOLN3_I96M_9	HLA-B35:01	VAFKEENTM	0.9722	0.9331	0.1739	61.5	0.2626	10.32	1/982	1/7748
SNV	Breast	MTHFD1_F489Y_10	HLA-B35:01	VPSVNGVRRY	0.9718	0.8736	0.4136	87.98	0.295	36.41	1/982	1/7748
SNV	Breast	NRROS_T71S_7	HLA-B35:01	DANPLKSLW	0.991	0.711	1.0411	213.37	0.3851	5.82	1/982	1/7748
SNV	Breast	PGM5_C324Y_9	HLA-B35:01	AIIAANLSY	0.9736	0.8798	0.1695	54.14	0.2511	3.14	1/982	1/7748
SNV	Breast	PGM5_C324Y_6	HLA-B35:01	AANLSYIPY	0.9849	0.8755	0.1373	471.65	0.4817	3.14	1/982	1/7748
SNV	Breast	SELP_C443S_6	HLA-B35:01	APAPVSQAL	0.9913	0.6904	0.0944	3.14	0.0598	1.96	1/982	1/7748
SNV	Breast	SGK494_G330D_8	HLA-B35:01	IPASLNQDL	0.9517	0.8207	0.2414	157.51	0.354	2.51	1/982	1/7748
SNV	Breast	ULBP1_L119F_3	HLA-B35:01	EPFTLQARM	0.9891	0.7956	0.3033	31.9	0.2085	4.9	1/982	1/7748
SNV	Breast	ZNF112_I878V_9	HLA-C07:01	FRWSSGLLV	0.9739	0.9408	0.0645	28.98	0.0471	5.62	1/982	1/7748
SNV	Breast	BRICD5_D173Y_2	HLA-A24:02	VYPAQAGAL	0.9533	0.6746	0.2249	27.21	0.301	1.67	1/982	1/7748
SNV	Breast	BRICD5_D173Y_2	HLA-A24:02	VYPAQAGALV	0.9621	0.8006	0.5068	74.77	0.412	1.67	1/982	1/7748
SNV	Breast	DLGAP4_R45H_4	HLA-B40:01	REAHFPGQNTL	0.9997	0.6098	0.1344	1.3	0.0378	27.75	1/982	1/7748
SNV	Breast	DLGAP4_R45H_2	HLA-C07:02	AHFPGQNTL	0.6647	0.9882	0.0573	22.18	0.0811	27.75	1/982	1/7748
SNV	Breast	GLMP_G337R_2	HLA-C07:02	FRASTGPGY	0.7612	0.9632	0.122	43.88	0.1221	58.12	1/982	1/7748
SNV	Breast	HSPBAP1_S330F_7	HLA-C03:04	YLNAAVFAF	0.87	0.9661	1.0263	209.2	0.3675	5.39	1/982	1/7748
SNV	Breast	MUC16_S7203A_5	HLA-A03:01	ALADAETSK	0.9983	0.5185	0.1339	8.09	0.0813	7.04	1/982	1/7748
SNV	Breast	MUC5B_P2288L_9	HLA-C07:02	SRTTATATL	0.8286	0.9046	0.1884	41.08	0.1178	78.15	1/982	1/7748
SNV	Breast	SH2D4A_S341L_9	HLA-C07:02	LRAGYQKTL	0.9706	0.9737	0.1285	49.55	0.1319	5.41	1/982	1/7748
SNV	Breast	UQCRC1_V230L_9	HLA-C07:02	THYKAPRML	0.623	0.9433	0.4255	172.92	0.2528	174.17	1/982	1/7748
SNV	Breast	AFF3_R68Q_4	HLA-C12:03	LSNQIQNTL	0.972	0.9835	0.1956	21.63	0.2214	100.77	1/982	1/7748
SNV	Breast	C14orf159_G186D_1	HLA-B18:01	DEQGQPVHM	0.9952	0.9707	0.0666	20.96	0.0845	14.4	1/982	1/7748
SNV	Breast	KCNK5_A418T_5	HLA-C12:03	IFQDTSITF	0.9447	0.9834	1.116	287.52	0.8637	1.62	1/982	1/7748
SNV	Breast	KDM4C_R121H_6	HLA-B18:01	YEDLEHKY	0.9989	0.9471	0.1945	27.54	0.0948	2.85	1/982	1/7748
SNV	Breast	KDM4C_R121H_1	HLA-C07:01	HKYWKNLTF	0.9953	0.8781	0.1285	142.96	0.1033	2.85	1/982	2/7748
SNV	Breast	OLA1_L267M_9	HLA-C12:03	LVIPFSGAM	0.9693	0.9859	0.1564	11.31	0.1369	100.3	1/982	1/7748
SNV	Breast	SIGLEC9_H207R_5	HLA-B08:01	QPQDRGTSL	0.9827	0.6982	0.04	10.07	0.0391	4.17	1/982	1/7748
SNV	Breast	APBA2_P388R_2	HLA-C07:02	NRSKNIRMM	0.8116	0.7715	0.2181	202.44	0.2713	4.28	1/982	1/7748
SNV	Breast	GALNT11_H181Y_9	HLA-C07:02	SVIDRTPAY	0.8069	0.8163	1.7835	45.02	0.1238	15.12	1/982	1/7748
SNV	Breast	GALNT11_H181Y_8	HLA-C04:01	VIDRTPAYL	0.9999	0.8498	0.0408	250.73	0.1117	15.12	1/982	1/7748
SNV	Breast	GLIS3_S631F_9	HLA-B07:02	SPRRVPAPF	0.9994	0.5056	0.0125	1.31	0.0136	1.43	1/982	1/7748
SNV	Breast	GLIS3_S631F_9	HLA-B07:02	SPRRVPAPFSI	0.9998	0.6231	0.1886	57.42	0.2175	1.43	1/982	1/7748
SNV	Breast	GLIS3_S631F_7	HLA-C07:02	RRVPAPFSI	0.9699	0.9683	0.07	8.34	0.0392	1.43	1/982	1/7748
SNV	Breast	GLIS3_S631F_7	HLA-C07:02	RRVPAPFSIL	0.993	0.9704	0.1285	292.48	0.3183	1.43	1/982	1/7748
SNV	Breast	MYCL_V191M_9	HLA-C07:02	IRKPVTITM	0.9302	0.8622	0.0044	2.71	0.0084	8.06	1/982	1/7748
SNV	Breast	PARP15_P366L_8	HLA-C07:02	HRDFIITL	0.9985	0.9364	0.3874	233.79	0.2883	3.82	1/982	1/7748
SNV	Breast	PRUNE2_D2351H_6	HLA-B53:01	EASWGHFEY	0.8053	0.5408	0.6048	82.91	0.1544	1.34	1/982	1/7748
SNV	Breast	SMTNL1_G61S_6	HLA-B07:02	APAEDSMSA	0.9826	0.5495	0.2555	374.48	0.3765	5.04	1/982	1/7748
SNV	Breast	TEX264_A240V_6	HLA-C07:02	SRETSVATL	0.8001	0.9392	0.1834	124.12	0.2169	18.68	1/982	1/7748
SNV	Breast	WDR76_L35V_2	HLA-B07:02	SVRPAQTTVL	0.9982	0.5157	0.5769	89.37	0.2548	12.64	1/982	1/7748
SNV	Breast	WDR76_L35V_1	HLA-C07:02	VRPAQTTVL	0.8492	0.9499	0.0756	29.23	0.0965	12.64	1/982	1/7748
SNV	Breast	ACSM1_P557T_6	HLA-C03:04	FVSELTKTI	0.9984	0.9911	0.0866	29.21	0.1642	1.26	1/982	1/7748
SNV	Breast	BORA_E490D_4	HLA-C03:04	SASDKELAL	0.9998	0.9939	0.0131	3.91	0.0389	5.32	1/982	1/7748
SNV	Breast	CCDC146_E114K_7	HLA-B35:01	QADNFPKAF	0.9381	0.9669	0.2319	29.02	0.2009	2.65	1/982	1/7748
SNV	Breast	CCDC146_E114K_3	HLA-B35:01	FPKAFSTEV	0.957	0.8729	0.149	343.38	0.4416	2.65	1/982	1/7748
SNV	Breast	ENOX2_D209Y_9	HLA-B35:01	HVDFAQARY	0.9001	0.921	0.6987	24.38	0.1892	18.12	1/982	1/7748
SNV	Breast	ENOX2_D209Y_6	HLA-B35:01	FAQARYDLY	0.996	0.7983	0.0853	21.62	0.1812	18.12	1/982	1/7748
SNV	Breast	GMEB1_S506L_9	HLA-B35:01	VAMESGLTL	0.9248	0.837	0.11	49.58	0.2439	11.31	1/982	1/7748
SNV	Breast	GMEB1_S506L_9	HLA-C03:04	VAMESGLTL	0.9997	0.9849	0.0024	1.13	0.0028	11.31	1/982	1/7748
SNV	Breast	GMEB1_S506L_10	HLA-C03:04	LVAMESGLTL	0.9979	0.9683	1.3876	97.14	0.2715	11.31	1/982	1/7748
SNV	Breast	HPS6_A230T_3	HLA-B35:01	VATPRLGLSY	0.9847	0.828	1.4074	396.45	0.4598	31.52	1/982	1/7748
SNV	Breast	HPS6_A230T_6	HLA-C03:04	KVMVATPRL	0.972	0.9878	1.5034	63.46	0.2269	31.52	1/982	1/7748
SNV	Breast	HPS6_A230T_4	HLA-C03:04	MVATPRLGL	0.9964	0.9834	0.501	78.32	0.2491	31.52	1/982	1/7748
SNV	Breast	KIAA0586_A171T_8	HLA-C03:04	VAAATAATI	0.9969	0.9914	0.044	5.1	0.0506	8.95	1/982	1/7748
SNV	Breast	KIAA0586_A171T_2	HLA-C03:04	ATIATAAPL	0.9984	0.9924	0.0954	56.65	0.2149	8.95	1/982	1/7748
SNV	Breast	NEDD9_G311D_3	HLA-B35:01	SVDSQNDAY	0.7608	0.7735	0.4467	43.06	0.2326	13.57	1/982	1/7748
SNV	Breast	PM20D2_Q380E_8	HLA-B35:01	NALNHTEEY	0.9959	0.9022	0.0478	1.54	0.0239	1.95	1/982	1/7748
SNV	Breast	RAB25_M121I_9	HLA-C03:04	HAEATIVVI	0.9738	0.9846	0.4014	119.2	0.2927	173.39	1/982	1/7748
SNV	Breast	SMARCA5_L587I_6	HLA-B35:01	NPQVDIQAM	0.9867	0.7844	0.1427	2.49	0.0485	84.57	1/982	1/7748
SNV	Breast	SYNE1_Q5524R_1	HLA-B35:01	RAASHLEEY	0.9757	0.9625	0.0754	13.24	0.1512	3.34	1/982	1/7748
SNV	Breast	SYS1_G63V_5	HLA-C03:04	STPPVRLSM	0.9986	0.9857	0.0816	166.26	0.336	42.33	1/982	1/7748
SNV	Breast	TBC1D5_L741I_3	HLA-A11:01	RTIRSTSGK	0.9988	0.6035	0.0206	6.57	0.0746	30.58	1/982	1/7748
SNV	Breast	TDG_A14P_6	HLA-B35:01	YSLQQPQAF	0.9152	0.9621	0.0333	32.46	0.2099	27.89	1/982	1/7748
SNV	Breast	TDG_A14P_6	HLA-C03:04	YSLQQPQAF	0.9962	0.9928	0.0645	33.42	0.1723	27.89	1/982	1/7748
SNV	Breast	TMEM106B_I186M_9	HLA-C03:04	KARLNNITM	0.9511	0.9927	0.2975	81.69	0.2535	9.29	1/982	1/7748
SNV	Breast	TMEM106B_I186M_3	HLA-C03:04	ITMIGPLDM	0.9822	0.9862	0.3766	211.16	0.3688	9.29	1/982	1/7748
SNV	Breast	TNRC6C_T164M_1	HLA-B35:01	MSTSQNVSF	0.9399	0.8896	0.035	94.69	0.3018	18.59	1/982	1/7748
SNV	Breast	ZFP3_G295A_8	HLA-C03:04	KAFKHSSAL	0.9957	0.9677	0.0004	1.82	0.0139	10.02	1/982	1/7748
SNV	Breast	ZNF543_R351Q_6	HLA-C03:04	KAFNRQSYL	0.9931	0.9672	0.1241	9.09	0.0763	7.76	1/982	1/7748
SNV	Breast	CHRD_R597W_6	HLA-B08:01	TPGPRWLL	0.9963	0.6209	0.4909	406.86	0.306	6.94	1/982	1/7748
SNV	Breast	HPS1_W375R_2	HLA-B14:02	LRQGINLVL	0.9962	0.7043	0.0899	396.34	0.0767	61	1/982	1/7748
SNV	Breast	HPS1_W375R_2	HLA-C07:01	LRQGINLVL	0.9934	0.6127	0.0569	17.57	0.0346	61	1/982	1/7748
SNV	Breast	HTT_R2169P_7	HLA-A02:01	ALFEAAPEV	0.9991	0.6055	0.043	1.05	0.0039	33.19	1/982	1/7748
SNV	Breast	HTT_R2169P_7	HLA-A02:01	ALFEAAPEVT	0.9477	0.5867	1.0664	26.95	0.2427	33.19	1/982	1/7748
SNV	Breast	HTT_R2169P_7	HLA-A02:01	ALFEAAPEVTL	0.9983	0.5932	0.5496	9.25	0.1524	33.19	1/982	1/7748
SNV	Breast	ANKS1A_R757H_7	HLA-A02:01	KLLQAAHSL	0.9769	0.6697	0.1243	6.05	0.1181	24.28	1/982	1/7748
SNV	Breast	ANKS1A_R757H_1	HLA-C03:04	HSLPKVKAL	0.9998	0.9904	0.0399	12.24	0.0953	24.28	1/982	1/7748
SNV	Breast	ANKS1A_R757H_1	HLA-C12:02	HSLPKVKAL	0.9801	0.9776	0.0703	86.53	0.1653	24.28	1/982	1/7748
SNV	Breast	CD226_M69V_9	HLA-A02:01	AIFSPTHGV	0.9778	0.577	0.0948	6.84	0.1274	1.65	1/982	1/7748
SNV	Breast	CD226_M69V_7	HLA-C03:04	FSPTHGVVI	0.9264	0.9285	0.0767	232.68	0.3821	1.65	1/982	1/7748
SNV	Breast	GEMIN8_V219M_7	HLA-C03:04	QAMEAAMQL	0.9997	0.9943	0.0191	1.89	0.015	24.36	1/982	1/7748
SNV	Breast	GEMIN8_V219M_7	HLA-C12:02	QAMEAAMQL	0.992	0.99	0.0398	50.01	0.1107	24.36	1/982	1/7748
SNV	Breast	INPP5B_L659V_9	HLA-A02:01	TLEEIVRSV	0.9966	0.6288	0.5871	23.95	0.2327	7.12	1/982	1/7748
SNV	Breast	INPP5B_L659V_10	HLA-A02:01	KTLEEIVRSV	0.9921	0.7977	1.2981	444.86	0.6497	7.12	1/982	1/7748
SNV	Breast	ISLR_T198M_7	HLA-A02:01	KTWALTMAV	0.9475	0.6656	0.157	145.61	0.453	28.13	1/982	2/7748
SNV	Breast	PRKG2_M227V_5	HLA-C03:04	SSIPVWTTF	0.9983	0.9658	0.1096	23.14	0.1502	1.37	1/982	1/7748
SNV	Breast	PRKG2_M227V_5	HLA-C12:02	SSIPVWTTF	0.9824	0.9528	0.0398	16.08	0.0452	1.37	1/982	1/7748
SNV	Breast	SCYL3_L57F_6	HLA-C03:04	KAAKHFKTL	0.9941	0.9935	0.039	16.16	0.1195	19.9	1/982	1/7748
SNV	Breast	SCYL3_L57F_6	HLA-C12:02	KAAKHFKTL	0.6454	0.9856	0.0703	214.76	0.296	19.9	1/982	1/7748
SNV	Breast	SEMA4F_R263H_8	HLA-B52:01	RAFDSYEHI	0.6926	0.9302	0.2891	60.89	0.0099	17.63	1/982	1/7748
SNV	Breast	SEMA4F_R263H_8	HLA-C03:04	RAFDSYEHI	0.9943	0.9894	0.0457	22.23	0.147	17.63	1/982	1/7748
SNV	Breast	SEMA4F_R263H_8	HLA-C12:02	RAFDSYEHI	0.7748	0.9274	0.083	165.57	0.245	17.63	1/982	1/7748
SNV	Breast	SLITRK6_G342E_6	HLA-A02:01	VLSPSELLI	0.9917	0.7401	0.3795	29.95	0.2518	130.62	1/982	1/7748
SNV	Breast	STAG2_N412Y_9	HLA-A02:01	VLTAEDCEYV	0.9439	0.6858	0.8398	421.38	0.6377	97	1/982	1/7748
SNV	Breast	TP53_C141Y_3	HLA-A02:01	KTYPVQLWV	0.9586	0.7715	0.3449	156.1	0.4649	85.18	2/982	7/7748
SNV	Breast	TP53_C141Y_5	HLA-C03:04	LAKTYPVQL	0.9992	0.9934	0.0794	37.44	0.1801	85.18	1/982	2/7748
SNV	Breast	TP53_C141Y_5	HLA-C12:02	LAKTYPVQL	0.9582	0.9822	0.1134	334.71	0.3862	85.18	1/982	1/7748
SNV	Breast	UTP20_R1866C_8	HLA-B40:01	QEIRDIACSTL	0.9965	0.9123	0.1599	207.32	0.5398	51.27	1/982	1/7748
SNV	Breast	ZNF549_R161T_2	HLA-C03:04	ITKEESSAL	0.9986	0.9853	0.1599	113.25	0.2874	9.97	1/982	1/7748
SNV	Breast	ZNF549_R161T_2	HLA-C12:02	ITKEESSAL	0.997	0.9498	0.1963	334.92	0.3863	9.97	1/982	1/7748
SNV	Breast	FOXA1_S250F_5	HLA-C07:02	LHPDFGNMF	0.5611	0.9907	0.3121	289.79	0.3169	328.06	1/982	1/7748
SNV	Breast	JAK3_Q290L_7	HLA-B18:01	GEQEVLLPF	0.9908	0.9555	0.033	27.43	0.0946	1.55	1/982	1/7748
SNV	Breast	OAS2_T229M_8	HLA-A24:02	PYALELLMV	0.8195	0.5051	0.886	140.37	0.5002	19.59	1/982	1/7748
SNV	Breast	OAS2_T229M_5	HLA-B18:01	LELLMVYAW	0.9658	0.9363	0.2804	496.55	0.2613	19.59	1/982	1/7748
SNV	Breast	TICRR_L776F_10	HLA-B18:01	AEFLEEILRF	0.9779	0.8177	0.1913	150.69	0.1824	5.41	1/982	1/7748
SNV	Breast	TICRR_L776F_1	HLA-C07:02	FYIDSIPKTL	0.9644	0.8936	0.0496	34.72	0.1069	5.41	1/982	1/7748
SNV	Breast	CENPE_R1895I_1	HLA-C07:02	IRVEETLKL	0.9136	0.943	0.0399	16.15	0.0687	1.96	1/982	1/7748
SNV	Breast	FAM122B_G62S_5	HLA-A02:01	SLEESLDMV	0.9687	0.7448	0.5443	15.25	0.1942	35.09	1/982	1/7748
SNV	Breast	FAM122B_G62S_8	HLA-C07:02	SRHSLEESL	0.8087	0.9686	0.0638	276.26	0.3099	35.09	1/982	1/7748
SNV	Breast	GFM2_I540T_7	HLA-A02:01	GMGELHTEI	0.9854	0.7064	0.5996	73.84	0.3525	61.69	1/982	1/7748
SNV	Breast	LARS2_V839F_8	HLA-A02:01	FLQQPEVFQM	0.9898	0.8708	0.568	104.34	0.397	25.85	1/982	1/7748
SNV	Breast	MED12_D234V_1	HLA-C07:02	VYTEKLAMF	0.5285	0.9712	0.1449	47.66	0.1285	35.17	1/982	1/7748
SNV	Breast	NF1_R1306Q_8	HLA-A02:01	KLLDPLLQI	0.9979	0.8372	0.0731	1.26	0.0132	19.67	1/982	3/7748
SNV	Breast	NF1_R1306Q_7	HLA-A02:01	LLDPLLQIV	0.9968	0.7802	0.192	3.76	0.0782	19.67	1/982	3/7748
SNV	Breast	NF1_R1306Q_8	HLA-A02:01	KLLDPLLQIV	0.9989	0.8535	0.1975	2.71	0.0589	19.67	1/982	3/7748
SNV	Breast	NF1_R1306Q_8	HLA-A02:01	KLLDPLLQIVI	0.9972	0.7223	0.9163	78.36	0.3602	19.67	1/982	3/7748
SNV	Breast	PBXIP1_P258A_2	HLA-C07:02	VAPDSVPSL	0.7728	0.9644	0.5427	410.08	0.3682	318.18	1/982	1/7748
SNV	Breast	PBXIP1_P258A_2	HLA-C01:02	VAPDSVPSL	0.9909	0.945	0	118.6	0.0094	318.18	1/982	1/7748
SNV	Breast	STXBP5_I851K_9	HLA-A03:01	VIVSPSGTK	0.9893	0.6778	0.2575	7.04	0.0752	10.38	1/982	1/7748
SNV	Breast	STXBP5_I851K_8	HLA-C01:02	IVSPSGTKL	0.9635	0.9497	0.0269	378.03	0.0375	10.38	1/982	1/7748
SNV	Breast	ARID5A_V530D_5	HLA-C16:01	FSPLDIPAF	0.6495	0.9543	0.2636	272.71	0.6656	9.84	1/982	1/7748
SNV	Breast	CCDC66_Q379E_9	HLA-C16:01	KSYPGSQSEL	0.9967	0.9653	0.1579	43.8	0.2705	5.76	1/982	2/7748
SNV	Breast	CCNC_Q240H_5	HLA-C16:01	KLYEHWKNF	0.8236	0.9713	1.6854	152.62	0.5145	17.3	1/982	1/7748
SNV	Breast	FAM171B_G299S_7	HLA-C04:01	TFDMNTSAW	0.9432	0.8858	0.2193	38.88	0.0508	19.49	1/982	1/7748
SNV	Breast	GAS2L3_G351A_1	HLA-C16:01	AALVPASSL	0.9292	0.9911	0.0756	6.71	0.0671	3.63	1/982	1/7748
SNV	Breast	LPCAT2_T107N_3	HLA-C16:01	KINQTALKF	0.8995	0.9695	0.7526	102.57	0.4305	7.65	1/982	1/7748
SNV	Breast	MADD_G1425V_6	HLA-C16:01	LANLNVRDL	0.7798	0.9497	0.6897	498.01	0.8426	41.35	1/982	1/7748
SNV	Breast	MAP1A_K125N_7	HLA-C04:01	SYSDWVNNL	0.9678	0.8474	0.147	197.2	0.1004	11.25	1/982	1/7748
SNV	Breast	MS4A14_L88F_7	HLA-C16:01	YPFWGAFIF	0.7133	0.9904	1.3744	337.52	0.727	1.1	1/982	1/7748
SNV	Breast	MYO1E_G654V_5	HLA-B44:03	EEKQVVLHL	0.993	0.9217	0.1039	10.21	0.1248	15.94	1/982	1/7748
SNV	Breast	STAM_A233T_2	HLA-C16:01	KTGEIITVL	0.9951	0.9815	0.2036	7.85	0.0787	36.39	1/982	1/7748
SNV	Breast	TAF5L_D24A_3	HLA-A03:01	YVASDGPLK	0.9226	0.5349	0.4086	293.39	0.4164	21.09	1/982	1/7748
SNV	Breast	USP33_F576L_3	HLA-C16:01	AALFARDEL	0.8458	0.9823	0.7121	70.08	0.3526	34.57	1/982	1/7748
SNV	Breast	USP7_D981H_9	HLA-B44:03	EEIPLDQVHI	0.988	0.6773	0.3478	403.32	0.3921	88	1/982	1/7748
SNV	Breast	CEMIP_A451E_5	HLA-A02:01	SMYQEEEFQV	0.9968	0.5999	0.3324	7.3	0.1328	4.75	1/982	1/7748
SNV	Breast	GPR137B_V300L_9	HLA-A02:01	VLFGVVLFL	0.9823	0.6129	0.0288	4.37	0.0938	43.24	1/982	1/7748
SNV	Breast	GPR137B_V300L_2	HLA-A02:01	FLWELLPTT	0.992	0.8013	0.0314	2.13	0.0485	43.24	1/982	1/7748
SNV	Breast	GPR137B_V300L_2	HLA-A02:01	FLWELLPTTL	0.9976	0.8152	0.2609	3.36	0.0728	43.24	1/982	1/7748
SNV	Breast	GPR137B_V300L_2	HLA-A02:01	FLWELLPTTLV	0.9989	0.709	0.9832	15.22	0.194	43.24	1/982	1/7748
SNV	Breast	HERC1_P2748L_2	HLA-A02:01	SLPPPAIAV	0.9916	0.7985	0.2775	3.97	0.0827	16.37	1/982	1/7748
SNV	Breast	HERC1_P2748L_1	HLA-B51:01	LPPPAIAV	0.9998	0.7877	0.0336	4.39	0.0329	16.37	1/982	1/7748
SNV	Breast	HERC1_P2748L_2	HLA-C02:02	SLPPPAIAV	0.5936	0.9827	0.7512	367.68	0.3871	16.37	1/982	1/7748
SNV	Breast	HGS_S381F_6	HLA-B51:01	LPETDFQPI	0.9681	0.7247	0.3306	211.65	0.3145	14.82	1/982	1/7748
SNV	Breast	SPEG_S2949F_1	HLA-B51:01	FPRPEGTTL	0.8323	0.6767	0.126	6.66	0.0494	2.48	1/982	1/7748
SNV	Breast	AGT_D86V_5	HLA-B57:03	KALQVQLVL	0.9853	0.9937	0.1013	31.35	0.1792	14.67	1/982	1/7748
SNV	Breast	AGT_D86V_7	HLA-B18:01	DEKALQVQL	0.9825	0.9543	0.101	25.99	0.0924	14.67	1/982	1/7748
SNV	Breast	AGT_D86V_5	HLA-C12:03	KALQVQLVL	0.9076	0.9891	0.2609	25.7	0.2473	14.67	1/982	1/7748
SNV	Breast	CCDC146_K70N_6	HLA-B57:03	AALKANYTL	0.9671	0.9971	0.1073	19.12	0.142	2.42	1/982	1/7748
SNV	Breast	CCDC146_K70N_6	HLA-C12:03	AALKANYTL	0.9795	0.9889	0.1747	41.77	0.337	2.42	1/982	1/7748
SNV	Breast	CEP152_L769V_5	HLA-B57:03	LIQQVEKEW	0.9767	0.9956	0.2695	93.99	0.3127	5.42	1/982	1/7748
SNV	Breast	COL24A1_P811Q_4	HLA-B18:01	EEGQIGAF	0.9942	0.7907	0.0858	204.24	0.1997	1.16	1/982	1/7748
SNV	Breast	COL24A1_P811Q_5	HLA-B18:01	GEEGQIGAF	0.7708	0.924	0.2066	206.7	0.2005	1.16	1/982	1/7748
SNV	Breast	ERCC6_K979E_6	HLA-C07:01	HRQIFEQFL	0.9977	0.752	0.0592	157.06	0.1069	3.75	1/982	1/7748
SNV	Breast	GARNL3_D515N_1	HLA-B18:01	NDLPSVPVF	0.9543	0.9584	0.2238	71.97	0.1353	1.48	1/982	1/7748
SNV	Breast	GRAP2_A276G_5	HLA-A30:01	RVRWGRALY	0.9925	0.8049	0.0686	12.99	0.0093	1.84	1/982	1/7748
SNV	Breast	GRAP2_A276G_6	HLA-C07:01	GRVRWGRAL	0.99	0.6344	0.1663	209.96	0.1177	1.84	1/982	1/7748
SNV	Breast	LIN9_L151R_8	HLA-B57:03	YSNIDKPRF	0.9879	0.6985	0.171	10.65	0.102	16.89	1/982	1/7748
SNV	Breast	LIN9_L151R_8	HLA-C12:03	YSNIDKPRF	0.6517	0.8985	0.9805	168.85	0.6738	16.89	1/982	1/7748
SNV	Breast	NYNRIN_N314I_3	HLA-B57:03	STIHTQALL	0.9519	0.9757	0.2627	278.94	0.4842	14.85	1/982	1/7748
SNV	Breast	NYNRIN_N314I_3	HLA-C12:03	STIHTQALL	0.9671	0.9447	0.2148	216.71	0.7634	14.85	1/982	1/7748
SNV	Breast	PCDHGA12_T589N_4	HLA-C12:03	YLVNKVVAV	0.9914	0.9665	0.6656	36.54	0.3137	2.31	1/982	1/7748
SNV	Breast	PXMP4_K42R_6	HLA-A30:01	AVYGARIRA	0.9194	0.8858	0.7984	133.72	0.0678	29.47	1/982	1/7748
SNV	Breast	PXMP4_K42R_1	HLA-A30:01	RIRAPHALV	0.9977	0.903	0.0176	10.12	0.0084	29.47	1/982	1/7748
SNV	Breast	PXMP4_K42R_2	HLA-C07:01	ARIRAPHAL	0.9973	0.7101	0.0091	25.77	0.0442	29.47	1/982	1/7748
SNV	Breast	RIC1_A939V_6	HLA-B18:01	QDLDTVASY	0.6349	0.9324	0.0615	53.66	0.1218	16.07	1/982	1/7748
SNV	Breast	RIC1_A939V_2	HLA-C12:03	TVASYLIIL	0.9647	0.9754	0.9805	168.23	0.6726	16.07	1/982	1/7748
SNV	Breast	RPL10_H147R_1	HLA-A30:01	RVIEALRRAK	0.9968	0.9394	1.5586	425.21	0.1581	547.09	1/982	1/7748
SNV	Breast	SAMD8_L228R_5	HLA-C07:01	HRSIRLRRL	0.9881	0.5821	0.1348	182.78	0.1125	11.19	1/982	1/7748
SNV	Breast	SAMD9L_T478A_3	HLA-B57:03	KTANMWEKI	0.9896	0.9879	0.4301	123.91	0.3529	22.32	1/982	1/7748
SNV	Breast	SAMD9L_T478A_6	HLA-B18:01	YEDKTANMW	0.9872	0.8981	0.2089	192.18	0.1963	22.32	1/982	1/7748
SNV	Breast	SNX29_S453R_1	HLA-A30:01	RSLLPSASV	0.9753	0.9845	0.179	496.48	0.1752	15.98	1/982	1/7748
SNV	Breast	SNX29_S453R_6	HLA-C12:03	HGSPLRSLL	0.9614	0.9892	0.77	119.15	0.569	15.98	1/982	1/7748
SNV	Breast	SNX29_S453R_1	HLA-C12:03	RSLLPSASV	0.8549	0.994	0.998	295.98	0.8737	15.98	1/982	1/7748
SNV	Breast	SORBS1_S369G_5	HLA-C12:03	RVVKGTQDL	0.8579	0.9528	0.7469	93.57	0.5044	7.23	1/982	1/7748
SNV	Breast	TRPS1_D627N_7	HLA-C12:03	FTTPDVNVL	0.9946	0.9704	0.065	11.53	0.1391	249.94	1/982	1/7748
SNV	Breast	TRPS1_D627N_6	HLA-C12:03	TTPDVNVLL	0.7599	0.9648	0.5118	366.31	0.9513	249.94	1/982	1/7748
SNV	Breast	USO1_K842R_1	HLA-B57:03	RTTDVEGRL	0.7804	0.9828	0.4929	413.91	0.5645	94.96	1/982	1/7748
SNV	Breast	VCAM1_K647N_1	HLA-B57:03	NSIDGAYTI	0.8771	0.6342	0.509	126.64	0.3561	32.49	1/982	1/7748
SNV	Breast	VCAM1_K647N_1	HLA-C12:03	NSIDGAYTI	0.9302	0.85	0.3701	29.86	0.2758	32.49	1/982	1/7748
SNV	Breast	VWF_K1720N_6	HLA-B57:03	KAFISNANI	0.956	0.8227	0.457	80.94	0.2918	61.42	1/982	1/7748
SNV	Breast	VWF_K1720N_8	HLA-C12:03	FAKAFISNA	0.9972	0.9843	1.0064	357.76	0.9424	61.42	1/982	1/7748
SNV	Breast	VWF_K1720N_6	HLA-C12:03	KAFISNANI	0.7565	0.9672	0.4194	82.69	0.475	61.42	1/982	1/7748
SNV	Breast	ZMYND19_E121G_4	HLA-B57:03	KQRGQSLYW	0.8428	0.9781	0.8991	133.14	0.3634	21.41	1/982	1/7748
SNV	Breast	ZMYND19_E121G_6	HLA-C12:03	SSKQRGQSL	0.9973	0.9081	0.2878	40.16	0.3301	21.41	1/982	1/7748
SNV	Breast	BCAS1_F198I_7	HLA-C07:01	SFFDKFIKL	0.6994	0.6201	0.4031	55.24	0.0689	25.37	1/982	1/7748
SNV	Breast	DVL3_F235I_9	HLA-C07:01	SRIERSSSI	0.9982	0.521	0.1176	16.19	0.0326	73.09	1/982	1/7748
SNV	Breast	GRIK2_M534I_9	HLA-C15:05	VIDFSKPFI	0.9898	0.9315	0.3464	264.76	0.4149	1.24	1/982	1/7748
SNV	Breast	HNRNPU_Y473F_1	HLA-C15:05	FTFIQNVPL	0.9977	0.8658	0.0762	235.86	0.3921	309.59	1/982	1/7748
SNV	Breast	IGHV3-66_S50I_9	HLA-C15:05	AASGFTVSI	0.9997	0.9559	0.0285	11.22	0.0572	3.02	1/982	1/7748
SNV	Breast	NFATC2_R478Q_8	HLA-C15:05	HAFYQVHQI	0.9993	0.9302	0.0921	86.08	0.2438	13.32	1/982	1/7748
SNV	Breast	ZNF805_T96A_5	HLA-C15:05	STEPATCEL	0.9783	0.8757	0.1048	382.64	0.4966	3.62	1/982	1/7748
SNV	Breast	ABLIM2_S292L_9	HLA-C03:04	ISVPASSTL	0.9998	0.9802	0.009	2.16	0.0196	3.53	1/982	1/7748
SNV	Breast	ABLIM2_S292L_9	HLA-C01:02	ISVPASSTL	0.9682	0.9052	0.0164	409.44	0.0407	3.53	1/982	1/7748
SNV	Breast	APOD_V87A_6	HLA-C03:04	RADGTANQI	0.9533	0.9897	0.1475	185.17	0.3508	218.81	1/982	1/7748
SNV	Breast	ASIC1_D357A_9	HLA-A02:01	ALDFLVEKA	0.9907	0.6295	0.6895	390.54	0.6209	3.18	1/982	1/7748
SNV	Breast	CTDP1_H757Y_4	HLA-A02:01	ALFYPMPVL	0.9707	0.6684	0.362	15.96	0.1982	15.31	1/982	1/7748
SNV	Breast	EXOSC4_L242M_8	HLA-C03:04	HVREASIML	0.9405	0.9909	0.6727	93.81	0.2678	35.91	1/982	1/7748
SNV	Breast	FAM167B_S26F_1	HLA-C03:04	FVKALTAKL	0.9812	0.9804	0.131	362.48	0.4506	34.06	1/982	1/7748
SNV	Breast	HEBP2_S97L_6	HLA-C03:04	YVEPGLGPF	0.9924	0.9858	0.1475	126.83	0.2992	19.33	1/982	1/7748
SNV	Breast	HERC2_G3000V_2	HLA-A02:01	GVSKSLFAV	0.9699	0.6606	0.1104	136.08	0.4414	15.36	1/982	1/7748
SNV	Breast	HNRNPL_F125L_5	HLA-A02:01	ALQELGPISYV	0.9987	0.541	0.7911	71.43	0.3483	88.4	1/982	1/7748
SNV	Breast	HNRNPL_F125L_3	HLA-B40:01	QELGPISYV	0.9699	0.5519	0.1233	4.42	0.1706	88.4	1/982	1/7748
SNV	Breast	HNRNPL_F125L_3	HLA-B40:01	QELGPISYVV	0.9474	0.5391	0.304	47.12	0.3813	88.4	1/982	1/7748
SNV	Breast	HOXB2_L307P_5	HLA-A02:01	FLPDPNFFA	0.9947	0.58	0.0325	1.59	0.0312	35.55	1/982	1/7748
SNV	Breast	HOXB2_L307P_5	HLA-A02:01	FLPDPNFFAA	0.9956	0.6443	0.2899	11.12	0.1672	35.55	1/982	1/7748
SNV	Breast	HOXB3_E202V_8	HLA-C03:04	YTSAQLVVL	0.9997	0.9741	0.039	8.94	0.0753	9.51	1/982	1/7748
SNV	Breast	INSR_P918A_4	HLA-A02:01	GLSAGNYSV	0.9814	0.6734	0.054	2.52	0.0557	20.83	1/982	1/7748
SNV	Breast	MARS2_A475S_8	HLA-A02:01	RIYKALESV	0.9882	0.6533	0.1425	16.63	0.2017	8.96	1/982	1/7748
SNV	Breast	MED13_S839L_8	HLA-A02:01	KMYPTPPLL	0.9964	0.6515	0.1021	2.1	0.0475	25.03	1/982	1/7748
SNV	Breast	MED13_S839L_8	HLA-C03:04	KMYPTPPLL	0.9835	0.9898	0.2846	16.32	0.1205	25.03	1/982	1/7748
SNV	Breast	MED13_S839L_8	HLA-C01:02	KMYPTPPLL	0.6305	0.9491	0.163	133.84	0.0097	25.03	1/982	1/7748
SNV	Breast	METTL22_Q391H_7	HLA-C03:04	LVYERLHQL	0.9989	0.9721	0.0767	10.26	0.0842	5.43	1/982	1/7748
SNV	Breast	METTL22_Q391H_7	HLA-C01:02	LVYERLHQL	0.8562	0.8701	0.1248	323.59	0.0318	5.43	1/982	1/7748
SNV	Breast	NUMA1_H1054Y_8	HLA-A02:01	TLQEALAYA	0.9924	0.5886	0.1989	6.05	0.1181	47.11	1/982	1/7748
SNV	Breast	NXN_K168R_8	HLA-B40:01	LEFPWGPRPF	0.9804	0.6047	0.4734	35.95	0.3563	30.73	1/982	1/7748
SNV	Breast	NXN_K168R_6	HLA-B51:01	FPWGPRPF	0.9891	0.6917	0.5585	217.6	0.3184	30.73	1/982	1/7748
SNV	Breast	PLCL2_P809S_1	HLA-C03:04	SIFDESFEF	0.9949	0.9934	0.2661	87.79	0.261	17.82	1/982	1/7748
SNV	Breast	PYGL_V530I_6	HLA-A02:01	FLGDDIFLREL	0.9984	0.6931	0.7451	9.03	0.1506	71.77	1/982	1/7748
SNV	Breast	RAI1_P1375L_2	HLA-A02:01	SLVGVEEGL	0.9342	0.8186	0.5235	18.66	0.2115	13.68	1/982	1/7748
SNV	Breast	RARS2_Q208K_8	HLA-A02:01	HLFEVYVKV	0.9989	0.6082	0.0201	1.46	0.019	61.7	1/982	1/7748
SNV	Breast	SEC24C_S205F_1	HLA-C03:04	FAPSQASSF	0.997	0.9921	0.0208	123.82	0.2967	42.18	1/982	1/7748
SNV	Breast	SORL1_D667N_5	HLA-B40:01	GEDFNRPVVV	0.9858	0.6098	0.3216	29.22	0.3371	30.73	1/982	1/7748
SNV	Breast	SP3_D344N_4	HLA-C03:04	VTINSTGIL	0.9968	0.9536	0.6426	458.46	0.4886	34.75	1/982	1/7748
SNV	Breast	SPTAN1_M1095V_1	HLA-A02:01	VLFREANEL	0.9599	0.6033	0.7351	32.91	0.261	78.61	1/982	1/7748
SNV	Breast	SRC_A374P_6	HLA-C03:04	MAAQIPSGM	0.9979	0.9928	0.0374	5.41	0.0529	22.88	1/982	1/7748
SNV	Breast	TBXAS1_S123R_5	HLA-C03:04	SVADRVLFL	0.999	0.9862	0.0794	22.2	0.1468	34.26	1/982	1/7748
SNV	Breast	TBXAS1_S123R_5	HLA-C01:02	SVADRVLFL	0.9931	0.929	0.1989	251.79	0.0209	34.26	1/982	1/7748
SNV	Breast	TMEM63B_S60F_4	HLA-A02:01	FLFFILRKV	0.9874	0.543	0.0177	135.73	0.441	28.02	1/982	1/7748
SNV	Breast	TNPO2_S254C_8	HLA-A02:01	RLIPHMHCI	0.9901	0.5808	0.0731	11.24	0.168	34.87	1/982	1/7748
SNV	Breast	TSC22D1_P66L_5	HLA-A02:01	SLLQLPPPA	0.9637	0.8265	0.1881	54.03	0.3124	60.55	1/982	1/7748
SNV	Breast	TSC22D1_P66L_9	HLA-C03:04	FPPPSLLQL	0.9945	0.9894	0.1599	86.49	0.2594	60.55	1/982	1/7748
SNV	Breast	TUBA1C_N356T_2	HLA-B51:01	ITYQPPTVV	0.9288	0.8271	0.3503	174.64	0.2896	109.46	1/982	1/7748
SNV	Breast	TUBA1C_N356T_2	HLA-C03:04	ITYQPPTVV	0.9758	0.9925	0.2095	7.6	0.0667	109.46	1/982	1/7748
SNV	Breast	ZFYVE26_D2027N_3	HLA-A02:01	SLNQILQPA	0.9779	0.7069	0.2314	295.78	0.5703	15.83	1/982	1/7748
SNV	Breast	CLASP1_R1333W_3	HLA-A02:01	ITWEDSLGV	0.9491	0.6153	0.3259	17.47	0.2059	15.23	1/982	1/7748
SNV	Breast	CLASP1_R1333W_4	HLA-A02:01	KITWEDSLGV	0.9188	0.5419	1.4274	51.51	0.3062	15.23	1/982	1/7748
SNV	Breast	DLD_Q266P_5	HLA-C07:01	QRILPKQGF	0.9969	0.5526	0.1809	150.39	0.1052	69.06	1/982	1/7748
SNV	Breast	LDB2_R87H_7	HLA-C07:01	GRTLIPHYF	0.998	0.5107	0.0645	32.89	0.0504	6.45	1/982	1/7748
SNV	Breast	NLGN2_P361H_2	HLA-C05:01	VHDDPEILM	0.9995	0.8427	0.2449	168.81	0.2692	14.46	1/982	1/7748
SNV	Breast	NLGN2_P361H_3	HLA-C05:01	VVHDDPEILM	0.9997	0.8043	0.2751	26.11	0.1356	14.46	1/982	1/7748
SNV	Breast	RASGRP4_R101C_7	HLA-C05:01	SADLAACLL	0.9997	0.9823	0.0246	17.11	0.116	1.56	1/982	1/7748
SNV	Breast	STAM2_M405V_2	HLA-C05:01	YVGQSIHQV	0.9982	0.9719	0.5234	293.93	0.3362	14.81	1/982	1/7748
SNV	Breast	ADCY4_W648L_2	HLA-A02:01	HLLPALSGL	0.9754	0.6057	0.1304	10.27	0.1608	2.29	1/982	1/7748
SNV	Breast	ADCY4_W648L_2	HLA-A02:01	HLLPALSGLV	0.9871	0.6841	0.3756	387.51	0.6192	2.29	1/982	1/7748
SNV	Breast	AK4_D88N_4	HLA-A02:01	WLLNGFPRT	0.9552	0.7303	0.7056	366.43	0.6069	54.25	1/982	1/7748
SNV	Breast	AK4_D88N_3	HLA-A02:01	LLNGFPRTL	0.99	0.7657	0.5905	92.83	0.382	54.25	1/982	1/7748
SNV	Breast	AK4_D88N_4	HLA-A02:01	WLLNGFPRTL	0.9851	0.6714	0.519	386.35	0.6186	54.25	1/982	1/7748
SNV	Breast	APBA1_D754H_3	HLA-B07:02	RPHLRYQL	0.9995	0.5312	0.1735	8.36	0.0985	1.32	1/982	1/7748
SNV	Breast	APBA1_D754H_4	HLA-C07:02	RRPHLRYQL	0.9397	0.9258	0.0676	69.38	0.1612	1.32	1/982	1/7748
SNV	Breast	ARPC2_D148N_3	HLA-C07:02	YRNDETMYV	0.8599	0.9554	0.2126	4.27	0.0157	151.99	1/982	1/7748
SNV	Breast	ATXN2_R1075K_1	HLA-A02:01	KMMAPPTHA	0.9778	0.5866	0.1229	119.93	0.4198	6.26	1/982	1/7748
SNV	Breast	CACNG4_P260H_6	HLA-C07:02	SRDVSHMGL	0.816	0.9395	0.2181	83.71	0.1769	3.23	1/982	1/7748
SNV	Breast	CCDC14_T682S_9	HLA-B44:03	EETIEPDKSY	0.9957	0.9546	0.1175	1.84	0.0341	19.06	1/982	1/7748
SNV	Breast	CCDC14_T682S_10	HLA-B44:03	NEETIEPDKSY	0.9995	0.9398	0.1881	7.25	0.1055	19.06	1/982	1/7748
SNV	Breast	CHD1L_R633W_9	HLA-B44:03	VEGSTKRKW	0.9974	0.8459	0.034	2.38	0.0473	55.97	1/982	1/7748
SNV	Breast	CITED2_D254N_4	HLA-B44:03	NEFNFMTDF	0.9967	0.9196	0.0749	4.98	0.0875	330.68	1/982	1/7748
SNV	Breast	DGKE_D348H_9	HLA-B44:03	MEADGIKLH	0.9775	0.824	0.3544	222.56	0.3454	3.44	1/982	1/7748
SNV	Breast	DGKE_D348H_9	HLA-B44:03	MEADGIKLHRW	0.9999	0.98	0.0164	1.56	0.0252	3.44	1/982	1/7748
SNV	Breast	ECE2_E524D_4	HLA-C07:02	RRFDSAQEKL	0.9933	0.9389	0.0414	389.08	0.3604	7.2	1/982	1/7748
SNV	Breast	ECE2_E524D_3	HLA-C04:01	RFDSAQEKL	0.9998	0.7193	0.0024	4.64	0.0116	7.2	1/982	1/7748
SNV	Breast	ECE2_E524D_3	HLA-C04:01	RFDSAQEKLL	0.9998	0.755	0.1048	395.63	0.1376	7.2	1/982	1/7748
SNV	Breast	EXTL3_M716V_11	HLA-A02:01	LLWPDIGVPIV	0.9963	0.7824	0.7351	241.04	0.5372	24.27	1/982	1/7748
SNV	Breast	FAM208B_S1513C_8	HLA-B44:03	SEHDEGLCF	0.9962	0.9623	0.0425	2.44	0.0486	33.71	1/982	1/7748
SNV	Breast	FOXO4_M433I_1	HLA-A02:01	IIAPPPVMA	0.9707	0.5772	1.3724	485.64	0.669	29.59	1/982	1/7748
SNV	Breast	HERC2_V1505F_10	HLA-B44:03	QEQGRSYKEF	0.9984	0.9727	0.1128	9.49	0.1207	11.46	1/982	1/7748
SNV	Breast	ITSN2_G234W_5	HLA-B07:02	SPKTWTSEW	0.9783	0.5737	0.6246	438.17	0.3903	8.95	1/982	1/7748
SNV	Breast	KTN1_D286H_7	HLA-B44:03	AEVKFKHF	0.9994	0.9659	0.2355	71.07	0.2581	46.74	1/982	1/7748
SNV	Breast	KTN1_D286H_7	HLA-B44:03	AEVKFKHFL	0.9825	0.9732	0.1218	1.97	0.0373	46.74	1/982	1/7748
SNV	Breast	KTN1_D286H_7	HLA-B44:03	AEVKFKHFLL	0.9856	0.9787	0.2885	254.4	0.3559	46.74	1/982	1/7748
SNV	Breast	KTN1_D286H_10	HLA-B44:03	KENAEVKFKHF	0.9997	0.9257	0.1384	308.16	0.3709	46.74	1/982	1/7748
SNV	Breast	LIMCH1_D107Y_9	HLA-C04:01	LFDPSDLQY	0.9631	0.8041	0.1103	19.66	0.0359	66.72	1/982	1/7748
SNV	Breast	MFN1_S6C_10	HLA-B44:03	AEPVCPLKHF	0.9682	0.9554	0.1853	43.66	0.2147	51.54	1/982	1/7748
SNV	Breast	MGA_D1418H_3	HLA-B07:02	TPHGPLSPGKM	0.9999	0.5675	0.235	273.45	0.3488	11.74	1/982	1/7748
SNV	Breast	MMS19_P994A_7	HLA-A02:01	VLLPYKAQV	0.9951	0.7666	0.1425	2.7	0.0586	30.14	1/982	1/7748
SNV	Breast	MMS19_P994A_3	HLA-C07:02	YKAQVIRAL	0.8697	0.9571	0.2865	85.84	0.1794	30.14	1/982	1/7748
SNV	Breast	NBEAL1_S1668L_1	HLA-C07:02	LFFEDFQEY	0.7481	0.9694	0.2351	130.74	0.2225	3.39	1/982	1/7748
SNV	Breast	PCDHA4_S282L_3	HLA-A02:01	SFLNDISPNV	0.9619	0.7809	1.9188	5.62	0.1128	1.15	1/982	1/7748
SNV	Breast	PCDHA4_S282L_2	HLA-C04:01	FLNDISPNV	0.9919	0.7543	0.9295	153.82	0.0864	1.15	1/982	1/7748
SNV	Breast	PLCB4_S1084F_9	HLA-C07:02	MRAHQAKIF	0.8566	0.926	0.1184	215.91	0.2789	12.67	1/982	1/7748
SNV	Breast	PREX1_L1045F_10	HLA-B44:03	AEGDPQGQGF	0.9974	0.8365	0.0724	2.37	0.0471	37.92	1/982	1/7748
SNV	Breast	PREX2_T1537S_4	HLA-C07:02	HRCSLSVTL	0.8516	0.8763	0.0826	307.97	0.3259	2.3	1/982	1/7748
SNV	Breast	PSMC6_H300Y_8	HLA-C07:02	GRLDRKIYI	0.9445	0.8353	0.4319	37.64	0.1121	35.71	1/982	1/7748
SNV	Breast	RAPGEF6_S746L_9	HLA-A02:01	SMLDFSNPL	0.9918	0.5079	0.026	3.63	0.0765	3.75	1/982	1/7748
SNV	Breast	RARRES1_L188V_7	HLA-C07:02	GHIDPSVRL	0.6245	0.9383	0.659	203.74	0.2721	23.99	1/982	1/7748
SNV	Breast	RARRES1_L188V_1	HLA-C07:02	VRLIWDLAF	0.9346	0.9092	0.1675	67.53	0.159	23.99	1/982	1/7748
SNV	Breast	SEC31A_S532R_1	HLA-B07:02	RPAAEEQLL	0.9901	0.5194	0.0408	14.97	0.1402	69.6	1/982	1/7748
SNV	Breast	SEPT8_M344I_5	HLA-B44:03	KEEEIRQMF	0.9989	0.9372	0.0769	1.66	0.029	59.45	1/982	1/7748
SNV	Breast	SLC44A5_E13Q_1	HLA-B44:03	QEEDFGDPRTY	0.9999	0.9399	0.0724	1.81	0.0333	1.88	1/982	1/7748
SNV	Breast	TERF2IP_Q308E_2	HLA-B44:03	SEPEVGAAI	0.899	0.9475	0.532	262.85	0.3584	111.35	1/982	1/7748
SNV	Breast	TIMMDC1_R186H_8	HLA-C07:02	FRINVGLHGL	0.9975	0.9473	0.1528	192.58	0.2655	73.25	1/982	1/7748
SNV	Breast	TYK2_L443V_7	HLA-A26:01	EVAPPRVVM	0.9987	0.8398	0.1133	12.5	0.0452	33.98	1/982	1/7748
SNV	Breast	TYK2_L443V_7	HLA-B07:02	EVAPPRVVM	0.9876	0.5243	0.4547	65.22	0.2283	33.98	1/982	1/7748
SNV	Breast	TYK2_L443V_5	HLA-B07:02	APPRVVMSI	0.9978	0.5862	0.15	32.28	0.1808	33.98	1/982	1/7748
SNV	Breast	TYK2_L443V_8	HLA-B44:03	HEVAPPRVV	0.8306	0.8795	0.2665	68.5	0.2553	33.98	1/982	1/7748
SNV	Breast	TYK2_L443V_8	HLA-B44:03	HEVAPPRVVM	0.8503	0.89	0.2582	295	0.3675	33.98	1/982	1/7748
SNV	Breast	XRN1_D357Y_6	HLA-B44:03	SEVFVYLKW	0.9995	0.8608	0.0024	1.6	0.0267	17.79	1/982	1/7748
SNV	Breast	XRN1_D357Y_10	HLA-B44:03	REHFSEVFVY	0.999	0.9276	0.0724	10.95	0.1282	17.79	1/982	1/7748
SNV	Breast	XRN1_D357Y_6	HLA-B44:03	SEVFVYLKWF	0.9906	0.8421	0.1534	293.35	0.3671	17.79	1/982	1/7748
SNV	Breast	XRN1_D357Y_8	HLA-C07:02	HFSEVFVYL	0.886	0.8675	0.2011	39.15	0.1147	17.79	1/982	1/7748
SNV	Breast	XRN1_D357Y_8	HLA-C04:01	HFSEVFVYL	0.8989	0.6311	0.17	74.85	0.0662	17.79	1/982	1/7748
SNV	Breast	YBEY_P67L_9	HLA-B07:02	VPTDVLSFL	0.9623	0.6193	0.1975	24.57	0.1663	8.09	1/982	1/7748
SNV	Breast	ZNF263_R239T_7	HLA-C04:01	HQDPSKTAL	0.9999	0.9613	0.0289	313	0.1221	21.47	1/982	1/7748
SNV	Breast	ATF7IP_R1001Q_7	HLA-C12:03	SSQPVSQPL	0.9962	0.9583	0.0415	104.22	0.5332	53.62	1/982	1/7748
SNV	Breast	EGF_A691T_6	HLA-B35:08	HPFAVTVF	0.9951	0.8326	0.2602	104.58	0.1821	1.11	1/982	1/7748
SNV	Breast	EGF_A691T_8	HLA-C12:03	VGHPFAVTV	0.9799	0.9747	0.2361	34.32	0.3028	1.11	1/982	1/7748
SNV	Breast	LDB1_Y183H_6	HLA-B18:01	VEGRLHLEF	0.9929	0.9103	0.0994	185.41	0.1942	160.44	1/982	1/7748
SNV	Breast	PRKAR1A_D364Y_10	HLA-B18:01	FERVLGPCSY	0.9804	0.9259	0.1608	479.07	0.2587	249.43	1/982	1/7748
SNV	Breast	ROBO3_R257H_5	HLA-C12:03	MVLEHPSFL	0.9542	0.9891	0.0575	6.1	0.0743	1.5	1/982	2/7748
SNV	Breast	SUPT5H_V242E_2	HLA-B18:01	GEGNLRLGY	0.9564	0.7873	0.3199	457.13	0.2553	89.3	1/982	1/7748
SNV	Breast	TRANK1_F2007L_7	HLA-C12:03	KLRDAFLKF	0.8063	0.9663	1.015	249.36	0.815	15.23	1/982	1/7748
SNV	Breast	ACPP_V262F_7	HLA-C07:01	SRLQGGFLV	0.9916	0.8324	0.112	59.04	0.0709	1.3	1/982	1/7748
SNV	Breast	AEBP1_T472P_7	HLA-C07:01	IHDDFVPTF	0.8206	0.6091	0.1476	491.16	0.1733	612.95	1/982	1/7748
SNV	Breast	AEBP1_T472P_7	HLA-C05:01	IHDDFVPTF	0.9885	0.9128	0.4176	299.9	0.3388	612.95	1/982	1/7748
SNV	Breast	AEBP1_T472P_8	HLA-C05:01	SIHDDFVPTF	0.9988	0.92	0.6753	160.55	0.2634	612.95	1/982	1/7748
SNV	Breast	BRIX1_E225K_5	HLA-B08:01	QIIEKDAAL	0.937	0.8554	0.0914	293.75	0.27	38.79	1/982	1/7748
SNV	Breast	C5orf42_V1919F_1	HLA-B08:01	FGGFRSPSL	0.9922	0.6746	0.159	219.3	0.2409	7.1	1/982	1/7748
SNV	Breast	CHST12_S374N_7	HLA-C07:01	YRNRTANSW	0.9293	0.6091	0.4031	280.94	0.1324	3.68	1/982	1/7748
SNV	Breast	ESYT1_R486W_4	HLA-A02:01	YLDWAQDLPL	0.9848	0.8651	0.5579	196.3	0.5039	102.28	1/982	1/7748
SNV	Breast	ESYT1_R486W_4	HLA-C05:01	YLDWAQDL	1	0.9978	0.051	172.5	0.2716	102.28	1/982	1/7748
SNV	Breast	ESYT1_R486W_4	HLA-C05:01	YLDWAQDLPL	0.9999	0.9973	0.1939	105.26	0.2251	102.28	1/982	1/7748
SNV	Breast	EXTL3_S352T_8	HLA-A02:01	FQGEKIETL	0.978	0.8322	0.4576	55.95	0.3169	8.83	1/982	1/7748
SNV	Breast	MXRA5_S1562F_1	HLA-C05:01	FSDQDAFNL	0.9999	0.929	0.0147	2.13	0.0272	128.47	1/982	1/7748
SNV	Breast	NDUFAF5_L125F_9	HLA-C05:01	QADIAENAF	0.9996	0.9838	0.1741	83.38	0.2062	4.39	1/982	1/7748
SNV	Breast	VPS13D_T2356M_7	HLA-A02:01	KTSPGMMNV	0.8818	0.6548	0.4654	222.05	0.5239	19.16	1/982	1/7748
SNV	Breast	VPS13D_T2356M_7	HLA-C05:01	KTSPGMMNV	0.9984	0.9658	0.8064	246.9	0.3142	19.16	1/982	1/7748
SNV	Breast	ALDH16A1_D288Y_9	HLA-B35:01	LLTDTADVY	0.6293	0.8054	0.7844	374.79	0.4527	7.6	1/982	1/7748
SNV	Breast	ANKFY1_H223Y_9	HLA-A30:01	KSKTEYPLY	0.9724	0.8751	0.2561	286.73	0.1151	18.24	1/982	1/7748
SNV	Breast	ANKFY1_H223Y_9	HLA-A30:01	KSKTEYPLYK	0.9989	0.8598	1.7029	208.92	0.0918	18.24	1/982	1/7748
SNV	Breast	ANKFY1_H223Y_4	HLA-B35:01	YPLYKAIKV	0.8707	0.5796	0.5334	434.17	0.4712	18.24	1/982	1/7748
SNV	Breast	ARFGEF1_E904K_9	HLA-A30:01	SSKQNVASK	0.9975	0.8064	0.0334	38.77	0.0192	54.51	1/982	1/7748
SNV	Breast	CES1_A148V_5	HLA-B35:01	LMVGVASTY	0.9662	0.9313	0.1204	166.38	0.3596	2.44	1/982	1/7748
SNV	Breast	CNTN1_G497E_6	HLA-C15:02	KANSTETLV	0.9986	0.854	0.1345	64.26	0.3135	3.47	1/982	1/7748
SNV	Breast	CNTNAP1_D513N_3	HLA-A30:01	KVNGQLVNL	0.9866	0.802	0.2382	221.59	0.0971	4.61	1/982	1/7748
SNV	Breast	CNTNAP1_D513N_3	HLA-C16:01	KVNGQLVNL	0.9963	0.9603	0.811	9.67	0.097	4.61	1/982	1/7748
SNV	Breast	CNTNAP1_D513N_3	HLA-C15:02	KVNGQLVNL	0.9996	0.7855	0.2449	5.89	0.0501	4.61	1/982	1/7748
SNV	Breast	CXorf67_A76T_7	HLA-B35:01	AAATSATIF	0.9707	0.8197	0.1539	239.73	0.397	2.2	1/982	1/7748
SNV	Breast	CXorf67_A76T_8	HLA-C16:01	AAAATSATI	0.8229	0.9812	0.2716	27.29	0.1995	2.2	1/982	1/7748
SNV	Breast	CXorf67_A76T_7	HLA-C16:01	AAATSATIF	0.6511	0.9799	0.0731	39.81	0.2571	2.2	1/982	1/7748
SNV	Breast	CXorf67_A76T_8	HLA-C15:02	AAAATSATI	0.9983	0.9648	0.1913	56.98	0.293	2.2	1/982	1/7748
SNV	Breast	CXorf67_A76T_6	HLA-C15:02	AATSATIFI	0.9982	0.9385	0.1775	82.41	0.3589	2.2	1/982	1/7748
SNV	Breast	DOCK10_D1831H_1	HLA-C16:01	HVNKPIIAV	0.9318	0.9802	0.4145	14.57	0.1356	10.37	1/982	1/7748
SNV	Breast	DOCK10_D1831H_1	HLA-C15:02	HVNKPIIAV	0.9997	0.9448	0.2289	3.54	0.0223	10.37	1/982	1/7748
SNV	Breast	DUOX1_K734M_3	HLA-C15:02	ALMESGLSI	0.9437	0.9404	1.2959	42.95	0.2502	1.09	1/982	1/7748
SNV	Breast	F5_H1363N_6	HLA-B35:01	SPDPSNTTL	0.9721	0.8645	0.2116	4.62	0.0859	3.37	1/982	1/7748
SNV	Breast	F5_H1363N_4	HLA-B35:01	DPSNTTLSL	0.9562	0.7947	0.3068	53.54	0.2501	3.37	1/982	1/7748
SNV	Breast	F5_H1363N_7	HLA-B35:01	LSPDPSNTTL	0.7834	0.8916	1.4885	362.72	0.4485	3.37	1/982	1/7748
SNV	Breast	F5_H1363N_6	HLA-C16:01	SPDPSNTTL	0.5947	0.9771	1.0009	216.02	0.5981	3.37	1/982	1/7748
SNV	Breast	F5_S1362R_5	HLA-B35:01	SPDPRHTTL	0.9484	0.8492	0.4015	10.33	0.1311	3.37	1/982	1/7748
SNV	Breast	F5_S1362R_5	HLA-C16:01	SPDPRHTTL	0.8732	0.9727	0.8484	39.42	0.2557	3.37	1/982	1/7748
SNV	Breast	F5_S1362R_5	HLA-C15:02	SPDPRHTTL	0.8973	0.874	0.4492	249.32	0.5709	3.37	1/982	1/7748
SNV	Breast	FPR2_P130T_2	HLA-A31:01	HTVWAQNHR	0.9443	0.9078	0.2248	58.92	0.1606	2.32	1/982	1/7748
SNV	Breast	GTF2I_P135T_2	HLA-C15:02	VTVPYEKML	0.995	0.8657	0.312	270.18	0.5889	33.34	1/982	1/7748
SNV	Breast	JARID2_P367R_1	HLA-C16:01	RSSAVNHTI	0.8386	0.9648	0.1253	58.69	0.3165	53.89	1/982	1/7748
SNV	Breast	JARID2_P367R_1	HLA-C15:02	RSSAVNHTI	0.9994	0.8713	0.0231	9.43	0.0819	53.89	1/982	1/7748
SNV	Breast	LRFN1_R721P_5	HLA-A31:01	HSYPPRARR	0.997	0.6986	0.1709	1.98	0.0059	4.73	1/982	1/7748
SNV	Breast	LRFN1_R721P_5	HLA-A30:01	HSYPPRARR	0.9937	0.9018	0.6687	300.91	0.1184	4.73	1/982	1/7748
SNV	Breast	LRRK1_D208H_5	HLA-C16:01	SGNEHIAIF	0.6179	0.9656	0.4704	23.85	0.1868	13.32	1/982	1/7748
SNV	Breast	METTL23_S170C_1	HLA-C15:02	CTLPGRHTV	0.9994	0.9594	0.1055	98.15	0.3907	40.22	1/982	1/7748
SNV	Breast	NCOR1_S2337F_4	HLA-A30:01	KSKFPIPGQ	0.9334	0.9139	0.5537	447.46	0.1637	23.71	1/982	1/7748
SNV	Breast	NCOR1_S2337F_1	HLA-B35:01	FPIPGQGY	0.9876	0.9433	0.2006	2.14	0.0403	23.71	1/982	1/7748
SNV	Breast	NCOR1_S2337F_1	HLA-B35:01	FPIPGQGYL	0.9956	0.9624	0.0551	1.72	0.0299	23.71	1/982	1/7748
SNV	Breast	NCOR1_S2337F_1	HLA-C16:01	FPIPGQGYL	0.7718	0.9819	1.0255	201.65	0.5815	23.71	1/982	1/7748
SNV	Breast	PHKB_D584G_7	HLA-B35:01	IIFDLSGFY	0.9727	0.9355	0.5443	401.95	0.4615	15.33	1/982	1/7748
SNV	Breast	PHKB_D584G_9	HLA-B35:01	YPIIFDLSGF	0.9981	0.9135	0.1069	46.68	0.2391	15.33	1/982	1/7748
SNV	Breast	PHKB_D584G_9	HLA-B35:01	YPIIFDLSGFY	0.9996	0.8517	0.5859	64.96	0.2675	15.33	1/982	1/7748
SNV	Breast	PIK3CA_F614I_9	HLA-B35:01	YPDPMVRGI	0.963	0.5527	0.5128	31.34	0.2071	27.38	1/982	1/7748
SNV	Breast	PIK3CA_F614I_9	HLA-C15:02	YPDPMVRGI	0.8019	0.6216	0.4774	458.87	0.7495	27.38	1/982	1/7748
SNV	Breast	PXDNL_K1329N_5	HLA-B35:01	YPVDNDMEL	0.9964	0.8702	0.0906	1.2	0.0136	3.32	1/982	1/7748
SNV	Breast	PXDNL_K1329N_7	HLA-C16:01	YSYPVDNDM	0.7911	0.9321	0.0969	22.81	0.1825	3.32	1/982	1/7748
SNV	Breast	PXDNL_K1329N_5	HLA-C16:01	YPVDNDMEL	0.8326	0.969	1.1141	443.46	0.805	3.32	1/982	1/7748
SNV	Breast	PXDNL_K1329N_7	HLA-C15:02	YSYPVDNDM	0.9856	0.7501	0.1871	14.73	0.1158	3.32	1/982	1/7748
SNV	Breast	PXDNL_K1329N_7	HLA-C15:02	YSYPVDNDMEL	0.9998	0.8057	0.5205	374.54	0.6911	3.32	1/982	1/7748
SNV	Breast	RALGPS2_M195I_2	HLA-C16:01	KITPCIPYL	0.9427	0.9733	0.6563	305.48	0.6987	9.28	1/982	1/7748
SNV	Breast	RALGPS2_M195I_2	HLA-C15:02	KITPCIPYL	0.99	0.907	0.1871	151.36	0.4677	9.28	1/982	1/7748
SNV	Breast	RBM47_P578T_4	HLA-B51:01	QAFTAAAI	0.998	0.8352	0.1182	82.63	0.2154	30	1/982	1/7748
SNV	Breast	RBM47_P578T_1	HLA-B51:01	TAAAIQVPI	0.9941	0.6942	0.1035	397.07	0.4037	30	1/982	1/7748
SNV	Breast	RBM47_P578T_1	HLA-C16:01	TAAAIQVPI	0.8544	0.9729	0.8484	372.58	0.755	30	1/982	1/7748
SNV	Breast	RYBP_V257I_9	HLA-C15:02	AVTVGNVTI	0.9531	0.933	0.785	240.43	0.5628	28.13	1/982	1/7748
SNV	Breast	RYBP_V257I_8	HLA-C15:02	VTVGNVTII	0.9984	0.8934	0.2496	53.78	0.2843	28.13	1/982	1/7748
SNV	Breast	SLC25A4_R80C_2	HLA-C16:01	ICYFPTQAL	0.897	0.9809	0.8351	84.6	0.3909	14.74	1/982	1/7748
SNV	Breast	SLC25A4_R80C_2	HLA-C15:02	ICYFPTQAL	0.9704	0.8737	0.7556	386.34	0.7011	14.74	1/982	1/7748
SNV	Breast	SLC30A6_P431S_1	HLA-C16:01	SGIGATQGL	0.6004	0.978	1.4525	243.93	0.6331	40.33	1/982	1/7748
SNV	Breast	SMARCE1_D375V_7	HLA-C16:01	SGQEGVVSM	0.8766	0.9794	0.2372	16.13	0.1481	22.8	1/982	1/7748
SNV	Breast	SMG1_C2700R_7	HLA-B35:01	QPPPTVRQF	0.8878	0.9202	0.1984	124.67	0.33	23.45	1/982	1/7748
SNV	Breast	SMG1_C2700R_1	HLA-C16:01	RQFITATEM	0.9918	0.9735	1.5598	152.47	0.5143	23.45	1/982	1/7748
SNV	Breast	STK10_D630H_5	HLA-A31:01	KMEQHHAVR	0.9424	0.7165	0.2148	35.33	0.1185	16.33	1/982	1/7748
SNV	Breast	STK10_D630H_5	HLA-A31:01	KMEQHHAVRR	0.9334	0.8029	0.5745	345.87	0.3707	16.33	1/982	1/7748
SNV	Breast	TADA3_R402Q_6	HLA-A30:01	KIMAAQQKK	0.9935	0.795	0.0306	152.45	0.0745	60.49	1/982	1/7748
SNV	Breast	TADA3_R402Q_1	HLA-A30:01	QQKKRTPTK	0.9831	0.6578	0.1655	261.75	0.109	60.49	1/982	1/7748
SNV	Breast	TBXAS1_E116Q_7	HLA-A30:01	RMASGLQFK	0.9956	0.8632	0.0089	90.7	0.0436	10.37	1/982	1/7748
SNV	Breast	TDRKH_K112E_3	HLA-C16:01	KAEAAIHQI	0.8423	0.9739	0.4145	282.64	0.676	34.25	1/982	1/7748
SNV	Breast	TDRKH_K112E_3	HLA-C15:02	KAEAAIHQI	0.9948	0.8928	0.1186	32.64	0.2041	34.25	1/982	1/7748
SNV	Breast	TFEC_P233T_6	HLA-A30:01	RTHGLTTLA	0.9953	0.7692	0.017	56.86	0.0282	10.85	1/982	1/7748
SNV	Breast	TFEC_P233T_6	HLA-C16:01	RTHGLTTL	0.9978	0.9869	0.6254	113.21	0.4508	10.85	1/982	1/7748
SNV	Breast	TFEC_P233T_4	HLA-C16:01	HGLTTLASL	0.8408	0.9848	1.4669	226.46	0.6114	10.85	1/982	1/7748
SNV	Breast	TFEC_P233T_6	HLA-C15:02	RTHGLTTLA	0.996	0.7654	1.2846	475.36	0.7594	10.85	1/982	1/7748
SNV	Breast	TFEC_P233T_1	HLA-C15:02	TTLASLGTV	0.9986	0.9467	0.6275	367.08	0.6845	10.85	1/982	1/7748
SNV	Breast	TLN1_D104N_7	HLA-A30:01	KTIMVDNSK	0.992	0.7886	0.111	266.01	0.1101	155.61	1/982	1/7748
SNV	Breast	TRIL_G256R_9	HLA-A31:01	IFQHLPRLR	0.9791	0.6887	0.3046	87.16	0.1941	5.04	1/982	1/7748
SNV	Breast	TRIL_G256R_10	HLA-A31:01	RIFQHLPRLR	0.9972	0.7933	0.1555	30.01	0.1055	5.04	1/982	1/7748
SNV	Breast	TRIL_G256R_8	HLA-C16:01	FQHLPRLRL	0.9643	0.9885	1.1664	326.55	0.7177	5.04	1/982	1/7748
SNV	Breast	TTF2_G327A_6	HLA-B35:01	VPAPGAPAA	0.8576	0.7686	0.2356	27.97	0.1983	14.4	1/982	1/7748
SNV	Breast	TUBE1_S238I_7	HLA-C15:02	TTVKPKILV	0.9994	0.8007	0.2095	78.36	0.3497	6.01	1/982	1/7748
SNV	Breast	UBR5_G2560V_8	HLA-A31:01	HVIKVLLVR	0.9906	0.5241	0.2345	63.13	0.1659	112.96	1/982	1/7748
SNV	Breast	UMPS_L153F_9	HLA-C16:01	KVTDAIVLF	0.9622	0.92	0.2838	11.73	0.1132	17.34	1/982	1/7748
SNV	Breast	UMPS_L153F_9	HLA-C15:02	KVTDAIVLF	0.937	0.7514	0.5866	35.58	0.2186	17.34	1/982	1/7748
SNV	Breast	YTHDF3_L448M_2	HLA-C16:01	RMDAAYRSL	0.9712	0.976	0.8582	22.48	0.1812	66.56	1/982	1/7748
SNV	Breast	YTHDF3_L448M_2	HLA-C15:02	RMDAAYRSL	0.9849	0.874	0.7083	25.43	0.172	66.56	1/982	1/7748
SNV	Breast	ZC3H12C_P652S_5	HLA-C16:01	YVSSSDPQL	0.929	0.9547	0.667	107.81	0.4408	1.73	1/982	1/7748
SNV	Breast	ZC3H12C_P652S_5	HLA-C15:02	YVSSSDPQL	0.9925	0.7721	0.4059	57.99	0.2957	1.73	1/982	1/7748
SNV	Breast	ZNF30_G508A_7	HLA-A30:01	HSRIHTAKK	0.9979	0.8597	0.0326	24.24	0.0138	6.48	1/982	1/7748
SNV	Breast	CBFB_Q67H_3	HLA-A32:01	SLHFFPASW	0.9797	0.9991	0.0177	5.83	0.028	15.11	1/982	1/7748
SNV	Breast	CDH26_R120H_6	HLA-A03:01	RIYVHHPVDR	0.9794	0.5191	0.6094	244.57	0.3892	1.03	1/982	1/7748
SNV	Breast	CDK4_K155Q_8	HLA-C05:01	VTSGGTVQL	0.9996	0.9852	0.1741	144.14	0.251	86.86	1/982	1/7748
SNV	Breast	CDK4_K155Q_8	HLA-C02:02	VTSGGTVQL	0.645	0.9655	0.0385	118.42	0.1816	86.86	1/982	1/7748
SNV	Breast	CPSF1_S406I_7	HLA-C05:01	LQEPPAIAV	0.9988	0.9955	0.2979	94.41	0.2163	72.53	1/982	1/7748
SNV	Breast	OSGIN2_M285V_6	HLA-A32:01	FVFHSVPEF	0.9484	0.9443	0.039	107.9	0.1481	67.77	1/982	1/7748
SNV	Breast	PLEKHG5_V598G_6	HLA-A32:01	RLAAVGSRI	0.9805	0.9639	0.3428	109.7	0.1491	2.46	1/982	1/7748
SNV	Breast	ZNF676_L324F_9	HLA-A32:01	KAFSWSSSF	0.9969	0.9599	0.0005	2.34	0.0092	2.52	1/982	1/7748
SNV	Breast	ZNF676_L324F_9	HLA-C02:02	KAFSWSSSF	0.8258	0.9893	0.0005	24.58	0.0562	2.52	1/982	1/7748
SNV	Breast	CDH13_G457S_2	HLA-C05:01	YSPSSTATV	0.762	0.9159	0.1939	422.01	0.3819	5.68	1/982	1/7748
SNV	Breast	CTNND2_Q505H_7	HLA-C05:01	YADPYRHL	1	0.8953	0.0043	57.03	0.1788	9.1	1/982	1/7748
SNV	Breast	CTNND2_Q505H_7	HLA-C05:01	YADPYRHLQY	0.9992	0.9248	0.6274	84.95	0.2077	9.1	1/982	1/7748
SNV	Breast	CTNND2_Q505H_7	HLA-C02:02	YADPYRHLQY	0.9423	0.9837	0.3479	108.38	0.1689	9.1	1/982	1/7748
SNV	Breast	DVL3_F235I_9	HLA-B27:05	SRIERSSSI	0.9997	0.8447	0.4199	145.83	0.4495	56	1/982	1/7748
SNV	Breast	HADHB_Q350H_7	HLA-C05:01	SQDPKDHLL	0.9999	0.9694	0.0361	6.67	0.0704	131.78	1/982	1/7748
SNV	Breast	HADHB_Q350H_8	HLA-C05:01	VSQDPKDHLL	0.9999	0.9788	0.0919	234.59	0.3077	131.78	1/982	1/7748
SNV	Breast	HADHB_Q350H_7	HLA-C05:01	SQDPKDHLLL	0.9999	0.9551	0.2274	403.59	0.3763	131.78	1/982	1/7748
SNV	Breast	HADHB_Q350H_9	HLA-C05:01	YVSQDPKDHLL	1	0.9631	0.7358	55.98	0.1775	131.78	1/982	1/7748
SNV	Breast	PDZD8_F1038L_8	HLA-B27:05	ERIQKLELM	0.9997	0.731	0.368	344.91	0.5529	26.22	1/982	1/7748
SNV	Breast	SDE2_E395Q_6	HLA-C05:01	FTSVAQLEL	0.9994	0.9421	0.294	30.67	0.143	56	1/982	1/7748
SNV	Breast	SDE2_E395Q_8	HLA-C02:02	LAFTSVAQL	0.8746	0.9861	0.0266	435.94	0.4318	56	1/982	1/7748
SNV	Breast	SDE2_E395Q_6	HLA-C02:02	FTSVAQLEL	0.8915	0.9741	0.0624	68.76	0.1298	56	1/982	1/7748
SNV	Breast	SLC6A9_F509S_5	HLA-C02:02	AVAGSLLGI	0.7032	0.9771	1.7534	260.12	0.3119	10.65	1/982	1/7748
SNV	Breast	TRAM1L1_R108I_9	HLA-C05:01	YVLDKINKI	0.9701	0.8748	0.5075	52.16	0.1729	28.22	1/982	1/7748
SNV	Breast	TRAM1L1_R108I_8	HLA-C05:01	VLDKINKIM	0.9998	0.9328	0.0234	5.09	0.0576	28.22	1/982	1/7748
SNV	Breast	TRAM1L1_R108I_9	HLA-C05:01	YVLDKINKIM	0.9953	0.8877	1.8567	427.09	0.3835	28.22	1/982	1/7748
SNV	Breast	TRAM1L1_R108I_9	HLA-C02:02	YVLDKINKI	0.5867	0.9147	0.1845	7.35	0.01	28.22	1/982	1/7748
SNV	Breast	TRAM1L1_R108I_9	HLA-C02:02	YVLDKINKIM	0.9479	0.9362	1.1529	423.8	0.4237	28.22	1/982	1/7748
SNV	Breast	BAZ2B_S804T_2	HLA-C03:03	FTFSAKIRV	0.8751	0.9906	0.5895	465.23	0.491	3.1	1/982	1/7748
SNV	Breast	COX6C_D57Y_1	HLA-C03:03	YVMKDFEEM	0.9995	0.9884	0.0284	4.95	0.0493	90.53	1/982	1/7748
SNV	Breast	COX6C_D57Y_9	HLA-C08:02	YADFYRNYY	0.7769	0.9324	0.4348	208.67	0.1001	90.53	1/982	1/7748
SNV	Breast	EVPL_E1198K_5	HLA-B14:02	ERVHKIFQV	0.9988	0.6774	0.0725	435.14	0.0801	12.26	1/982	1/7748
SNV	Breast	IL12RB1_S221F_9	HLA-B15:01	RQLGSQGSF	0.9976	0.8608	0.0306	3.62	0.0356	3.1	1/982	1/7748
SNV	Breast	PDS5B_N202I_1	HLA-C03:03	ILVPAHKNL	0.8404	0.9814	0.6816	485.01	0.4977	15.8	1/982	1/7748
SNV	Breast	PDS5B_N202I_8	HLA-C08:02	LLDTVLVIL	0.999	0.9835	0.0451	94.43	0.064	15.8	1/982	1/7748
SNV	Breast	POLE2_R305H_3	HLA-B15:01	KLHIMFAGY	0.9984	0.9043	0.0838	394.49	0.4781	4.45	1/982	1/7748
SNV	Breast	RPP30_I146V_3	HLA-B15:01	VAVDRGLAF	0.9977	0.8224	0.0979	13.7	0.1156	7.81	1/982	1/7748
SNV	Breast	RPP30_I146V_3	HLA-C03:03	VAVDRGLAF	0.9983	0.97	0.0295	3.03	0.0318	7.81	1/982	1/7748
SNV	Breast	SVIL_R849H_8	HLA-B15:01	RQRRMNAHY	0.9996	0.7711	0.0381	2.09	0.0139	29.15	1/982	1/7748
SNV	Breast	TP53_C176F_9	HLA-B15:01	HMTEVVRRF	0.9944	0.8762	0.2634	26.91	0.1628	99.15	3/982	5/7748
SNV	Breast	BHMT2_A244V_9	HLA-A02:01	MVQPLGFHV	0.9796	0.8162	0.1134	361.41	0.6038	3.57	1/982	1/7748
SNV	Breast	CERCAM_V210F_3	HLA-C14:02	FRFPMVHSTF	0.9786	0.9808	0.6476	124.89	0.5593	64.44	1/982	1/7748
SNV	Breast	FAM124B_N113S_5	HLA-C14:02	YFFASQEF	0.9107	0.9452	0.1084	8.67	0.134	2.1	1/982	1/7748
SNV	Breast	FAM124B_N113S_3	HLA-C14:02	FASQEFYSL	0.9959	0.9622	0.3785	238.8	0.7626	2.1	1/982	1/7748
SNV	Breast	KDELC2_D219G_5	HLA-A02:01	KMFSGEILL	0.9956	0.6202	0.0645	1.79	0.0389	55.95	1/982	1/7748
SNV	Breast	KDELC2_D219G_5	HLA-A02:01	KMFSGEILLSL	0.9991	0.501	0.5972	300.29	0.5728	55.95	1/982	1/7748
SNV	Breast	KLHL8_P262L_2	HLA-A02:01	LLVDFLMGV	0.9977	0.9407	0.0006	1.53	0.0252	23.51	1/982	1/7748
SNV	Breast	KLHL8_P262L_3	HLA-A02:01	LLLVDFLMGV	0.9956	0.9349	0.0931	161.03	0.4702	23.51	1/982	1/7748
SNV	Breast	KLHL8_P262L_2	HLA-A02:01	LLVDFLMGVV	0.9963	0.9295	0.3157	351.31	0.5982	23.51	1/982	1/7748
SNV	Breast	MST1R_Q1104K_4	HLA-C08:02	YIDKAQNRI	0.9996	0.9718	0.0174	12.66	0.0226	38.17	1/982	1/7748
SNV	Breast	SETD1A_D1591H_4	HLA-B51:01	IAAHEMVI	0.9979	0.559	0.3613	434.66	0.4172	29.3	1/982	1/7748
SNV	Breast	CDH1_E243K_4	HLA-C03:03	NAVKDPMEI	0.9892	0.9814	0.215	345.19	0.4427	327.76	1/982	1/7748
SNV	Breast	CEP68_A214V_2	HLA-A03:01	RVEPRGGSLAK	0.9989	0.637	0.4313	150.58	0.3262	29.27	1/982	1/7748
SNV	Breast	CEP68_A214V_2	HLA-B07:02	RVEPRGGSL	0.9958	0.7604	0.2938	20.13	0.1556	29.27	1/982	1/7748
SNV	Breast	CEP68_A214V_2	HLA-C03:03	RVEPRGGSL	0.9078	0.9907	0.6727	268.2	0.4018	29.27	1/982	1/7748
SNV	Breast	CHD7_A1814T_7	HLA-B15:01	SMRADPTLCF	0.9997	0.8804	0.3275	48.46	0.2145	2.64	1/982	1/7748
SNV	Breast	CHD7_A1814T_6	HLA-C07:02	MRADPTLCF	0.8721	0.8858	0.028	7	0.0331	2.64	1/982	1/7748
SNV	Breast	CHD7_A1814T_6	HLA-C07:02	MRADPTLCFL	0.9905	0.9518	0.0573	297.24	0.3207	2.64	1/982	1/7748
SNV	Breast	CHD7_A1814T_5	HLA-C03:03	RADPTLCFL	0.9645	0.9923	0.1366	281.02	0.4094	2.64	1/982	1/7748
SNV	Breast	IL4R_N98I_6	HLA-C03:03	VVSADIYTL	0.9977	0.9778	0.3064	32.45	0.1706	39.71	1/982	1/7748
SNV	Breast	TRMT112_E72K_9	HLA-B15:01	IQVPKGPVKGY	0.9999	0.7423	0.3598	35.3	0.184	211.7	1/982	1/7748
SNV	Breast	VIL1_D242N_6	HLA-C03:03	KAAVPNTVV	0.9183	0.982	0.15	41.39	0.1874	2.01	1/982	1/7748
SNV	Breast	ANGEL2_F540V_5	HLA-A02:01	LLAKVRLEL	0.9778	0.5307	0.5138	148.14	0.456	38.43	3/982	3/7748
SNV	Breast	ANGEL2_F540V_5	HLA-A02:01	LLAKVRLEL	0.9778	0.5307	0.5138	148.14	0.456	38.43	3/982	3/7748
SNV	Breast	ANGEL2_F540V_5	HLA-A02:01	LLAKVRLEL	0.9778	0.5307	0.5138	148.14	0.456	38.43	3/982	3/7748
SNV	Breast	ANGEL2_F540V_5	HLA-C16:01	LLAKVRLEL	0.9211	0.9787	1.2036	283.86	0.6773	38.43	3/982	3/7748
SNV	Breast	ANGEL2_F540V_5	HLA-C16:01	LLAKVRLEL	0.9211	0.9787	1.2036	283.86	0.6773	38.43	3/982	3/7748
SNV	Breast	ANGEL2_F540V_5	HLA-C16:01	LLAKVRLEL	0.9211	0.9787	1.2036	283.86	0.6773	38.43	3/982	3/7748
SNV	Breast	ARNT_S678F_1	HLA-A02:01	FMSLPGAPTA	0.9771	0.5582	0.6596	37.39	0.2735	61.13	1/982	1/7748
SNV	Breast	ARNT_S678F_5	HLA-C16:01	SSFSFMSL	0.9959	0.9903	1.192	300.74	0.6942	61.13	1/982	1/7748
SNV	Breast	ARNT_S678F_9	HLA-C16:01	FQTPSSFSF	0.9694	0.9848	0.9635	128.77	0.4774	61.13	1/982	1/7748
SNV	Breast	ARNT_S678F_9	HLA-C12:03	FQTPSSFSF	0.9721	0.9879	0.8996	68.2	0.43	61.13	1/982	1/7748
SNV	Breast	DICER1_S1747L_9	HLA-C16:01	LVNNTIFAL	0.9702	0.9781	0.5566	11.43	0.1109	24.63	1/982	1/7748
SNV	Breast	DICER1_S1747L_9	HLA-C12:03	LVNNTIFAL	0.9854	0.9855	0.5679	24.79	0.2419	24.63	1/982	1/7748
SNV	Breast	DMXL1_K2388R_5	HLA-B44:03	EEGERQNKRF	0.9973	0.905	0.1945	412.99	0.3939	13.38	1/982	1/7748
SNV	Breast	EVI5_S221R_1	HLA-A02:01	RLGQEVLFNV	0.9969	0.69	0.3359	181.27	0.4905	7.21	1/982	1/7748
SNV	Breast	FAH_R131W_3	HLA-C16:01	SSWQHATNV	0.8268	0.978	0.2915	174.06	0.5461	60.35	1/982	1/7748
SNV	Breast	FAH_R131W_3	HLA-C12:03	SSWQHATNV	0.9199	0.9697	0.2361	91.52	0.4987	60.35	1/982	1/7748
SNV	Breast	FHL1_L257F_1	HLA-C16:01	FTLFPSANL	0.9264	0.9884	0.5074	124.19	0.4699	5.02	1/982	1/7748
SNV	Breast	FHL1_L257F_1	HLA-C12:03	FTLFPSANL	0.9863	0.9934	0.2319	62.3	0.4088	5.02	1/982	1/7748
SNV	Breast	HCK_S217R_4	HLA-C16:01	STFRTLQEL	0.9868	0.9866	0.0891	17.37	0.1559	15.45	1/982	1/7748
SNV	Breast	HCK_S217R_4	HLA-C12:03	STFRTLQEL	0.9933	0.9868	0.0638	15.92	0.1818	15.45	1/982	1/7748
SNV	Breast	HSPA2_G167E_2	HLA-B44:03	TELNVLRII	0.994	0.964	0.3236	146.83	0.3127	49.07	1/982	1/7748
SNV	Breast	ING4_E117K_6	HLA-B44:03	KEKQIKSSDY	0.9983	0.6635	0.1802	238.05	0.3507	49.95	1/982	1/7748
SNV	Breast	KRT86_E388D_4	HLA-C16:01	LIRDYQEVM	0.7376	0.9741	0.7315	394.83	0.7715	5.16	1/982	1/7748
SNV	Breast	KRT86_E388D_4	HLA-C12:03	LIRDYQEVM	0.9989	0.9855	0.523	118.4	0.5673	5.16	1/982	1/7748
SNV	Breast	LCOR_W195C_5	HLA-B44:03	REASCAKPHY	0.9966	0.9221	0.062	16.21	0.1476	11.34	1/982	1/7748
SNV	Breast	LRRK1_H758Y_1	HLA-A02:01	YLDLIEAKF	0.9516	0.669	1.0606	185.72	0.4946	3.94	1/982	1/7748
SNV	Breast	LRRK1_H758Y_8	HLA-C16:01	VVLVVGTYL	0.5019	0.9907	1.7999	157.28	0.5217	3.94	1/982	1/7748
SNV	Breast	PARP1_D678H_5	HLA-A02:01	KMIFHVESM	0.944	0.535	0.2758	341.37	0.5936	243.86	1/982	1/7748
SNV	Breast	PARP1_D678H_5	HLA-C16:01	KMIFHVESM	0.9933	0.9824	0.4145	63.58	0.3328	243.86	1/982	1/7748
SNV	Breast	PARP1_D678H_5	HLA-C12:03	KMIFHVESM	0.9963	0.9912	0.4284	103.74	0.532	243.86	1/982	1/7748
SNV	Breast	PDK4_I302S_2	HLA-C16:01	RSIDRLFSY	0.757	0.9613	0.014	8.71	0.0901	14.86	1/982	1/7748
SNV	Breast	PDK4_I302S_2	HLA-C12:03	RSIDRLFSY	0.6926	0.9565	0.1064	2.82	0.0257	14.86	1/982	1/7748
SNV	Breast	PREP_D528N_1	HLA-B18:01	NDFQCAAEY	0.8781	0.9565	0.0624	215.58	0.2034	45.18	1/982	1/7748
SNV	Breast	RAB28_S159L_2	HLA-A02:01	VLAKTGDSV	0.9478	0.6082	0.4269	394.43	0.6231	16.02	1/982	1/7748
SNV	Breast	RAB28_S159L_1	HLA-C12:03	LAKTGDSVF	0.8725	0.9875	0.2609	264.12	0.8347	16.02	1/982	1/7748
SNV	Breast	SLC25A14_G25V_9	HLA-C16:01	ATAAVIVSV	0.9924	0.9801	0.6358	91.55	0.407	11.09	1/982	1/7748
SNV	Breast	SLC25A14_G25V_2	HLA-C16:01	SVHQKSTTV	0.7136	0.9591	0.4427	26.23	0.1957	11.09	1/982	1/7748
SNV	Breast	SLC25A14_G25V_9	HLA-C12:03	ATAAVIVSV	0.9927	0.9671	0.283	36.97	0.3158	11.09	1/982	1/7748
SNV	Breast	SLC25A14_G25V_2	HLA-C12:03	SVHQKSTTV	0.9686	0.9325	0.339	14.82	0.1734	11.09	1/982	1/7748
SNV	Breast	SPPL2A_F324L_10	HLA-A02:01	ILQDILGIAL	0.9917	0.5423	0.519	20.45	0.2193	27.61	1/982	1/7748
SNV	Breast	TBX6_A423V_3	HLA-C16:01	YTVPGGYL	0.9864	0.9917	0.678	495.39	0.8409	1.63	1/982	1/7748
SNV	Breast	TBX6_A423V_3	HLA-C12:03	YTVPGGYL	0.9962	0.993	0.9444	287.63	0.8639	1.63	1/982	1/7748
SNV	Breast	UBR1_E1281K_6	HLA-C16:01	LSFGVKSSI	0.7767	0.9733	0.3356	321.74	0.7134	15.79	1/982	1/7748
SNV	Breast	UBR1_E1281K_6	HLA-C12:03	LSFGVKSSI	0.9736	0.9828	0.1311	26.52	0.2526	15.79	1/982	1/7748
SNV	Breast	WDR11_W751S_3	HLA-C16:01	RSSVRKIRF	0.5036	0.9885	1.0139	473.24	0.8261	26.71	1/982	1/7748
SNV	Breast	ZHX2_F139L_5	HLA-B44:03	GEANLKLKL	0.997	0.9325	0.1903	9.01	0.1177	88.14	1/982	1/7748
SNV	Breast	ZNF740_K99E_7	HLA-C12:03	FQVKIPENF	0.8199	0.9811	0.8996	406.23	0.9903	37.71	1/982	1/7748
SNV	Breast	ADAMTS10_R779Q_4	HLA-A02:01	FQLQQGPDQV	0.9227	0.6538	0.8485	400.74	0.6266	10.88	1/982	1/7748
SNV	Breast	AGAP6_E504K_8	HLA-A02:01	ELDDWPVKL	0.8886	0.6981	0.5996	73.25	0.3515	5.03	1/982	1/7748
SNV	Breast	AGAP6_E504K_9	HLA-A02:01	LELDDWPVKL	0.8877	0.7572	1.8999	46.46	0.2946	5.03	1/982	1/7748
SNV	Breast	DDHD2_Q711R_9	HLA-A68:01	GIFLDQPLR	0.9332	0.5142	0.5553	400.47	0.6313	18.65	3/982	3/7748
SNV	Breast	DDHD2_Q711R_9	HLA-A68:01	GIFLDQPLR	0.9332	0.5142	0.5553	400.47	0.6313	18.65	3/982	3/7748
SNV	Breast	DDHD2_Q711R_9	HLA-A68:01	GIFLDQPLR	0.9332	0.5142	0.5553	400.47	0.6313	18.65	3/982	3/7748
SNV	Breast	FASTKD2_S464F_3	HLA-C07:02	TYFSLNHVY	0.6064	0.6511	0.0496	10.52	0.0512	19.03	1/982	1/7748
SNV	Breast	FASTKD2_S464F_2	HLA-C14:02	YFSLNHVY	0.6792	0.7535	0.3629	148.34	0.6038	19.03	1/982	1/7748
SNV	Breast	FAT4_Q2931H_5	HLA-C07:02	IFNKHILKY	0.6726	0.7674	0.1631	147.76	0.2356	2.19	1/982	1/7748
SNV	Breast	GLT8D1_K131T_8	HLA-A02:01	KIVNFDPTL	0.9299	0.5479	0.5972	55.12	0.3149	78.39	1/982	1/7748
SNV	Breast	HEG1_K277N_8	HLA-A68:01	ELTTPSRNR	0.9913	0.6042	0.8692	356.72	0.6049	35.38	1/982	1/7748
SNV	Breast	ITGB3_S123L_6	HLA-C07:02	LRPDDLKNF	0.8041	0.9599	0.1481	332.66	0.3373	1.22	1/982	1/7748
SNV	Breast	KAT6A_R1169Q_4	HLA-B07:02	RPGQKPGFKL	0.9988	0.5261	0.1145	10.9	0.1232	41.15	1/982	1/7748
SNV	Breast	KCNJ8_E237K_3	HLA-B51:01	TPKGEVVPI	0.8991	0.7632	0.4038	123.13	0.2492	9.09	1/982	1/7748
SNV	Breast	KLHL5_R115Q_4	HLA-C14:02	IGYQRSSQL	0.753	0.9667	0.804	54.62	0.3684	33.9	1/982	1/7748
SNV	Breast	NDST2_P207L_8	HLA-C14:02	YQVNPSALL	0.8533	0.9445	0.7929	83.92	0.4595	1.31	1/982	1/7748
SNV	Breast	NDST2_P207L_7	HLA-C14:02	QVNPSALLL	0.9919	0.9562	1.4311	105.33	0.5158	1.31	1/982	1/7748
SNV	Breast	PLS3_E16K_1	HLA-A02:01	KLKEAFAKV	0.9928	0.7891	0.1691	10.87	0.1653	36.25	1/982	1/7748
SNV	Breast	SLC3A2_S9L_8	HLA-B51:01	QPPEALIAV	0.9726	0.9808	0.0294	28.42	0.1246	104.48	1/982	1/7748
SNV	Breast	SLC3A2_S9L_1	HLA-C14:02	AVVSIPRQL	0.6488	0.9649	0.9932	275.24	0.8234	104.48	3/982	3/7748
SNV	Breast	SLC3A2_S9L_1	HLA-C14:02	AVVSIPRQL	0.6488	0.9649	0.9932	275.24	0.8234	104.48	3/982	3/7748
SNV	Breast	SLC3A2_S9L_1	HLA-C14:02	AVVSIPRQL	0.6488	0.9649	0.9932	275.24	0.8234	104.48	3/982	3/7748
SNV	Breast	TARBP1_D1149N_6	HLA-A02:01	KLLDKNELV	0.9977	0.7701	0.1055	1.4	0.0173	45.47	1/982	1/7748
SNV	Breast	WWP1_H670Y_5	HLA-B51:01	MALFYGKFI	0.9343	0.5285	0.5045	92.55	0.225	123.54	1/982	1/7748
SNV	Breast	ABL1_Y440H_6	HLA-C03:04	YGMSPHPGI	0.9912	0.9833	1.6046	147.06	0.3192	54.24	1/982	1/7748
SNV	Breast	ARRDC3_E344K_1	HLA-C03:04	KAPPSYAEV	0.9453	0.9809	0.0645	174.67	0.3428	65.84	1/982	1/7748
SNV	Breast	BRINP3_T176M_5	HLA-B57:01	VTLEMLHQL	0.9892	0.99	0.2291	409.2	0.4633	10.22	1/982	1/7748
SNV	Breast	BRINP3_T176M_5	HLA-C03:04	VTLEMLHQL	0.9995	0.9916	0.3251	238.5	0.3854	10.22	1/982	1/7748
SNV	Breast	C2orf49_R140K_7	HLA-C03:04	FTSNAFKKL	0.9946	0.9912	0.0912	498.73	0.5024	12.27	1/982	1/7748
SNV	Breast	CC2D1B_P480L_9	HLA-C03:04	LASAEDSAL	0.998	0.9909	0.2284	140.62	0.3131	11.93	1/982	1/7748
SNV	Breast	CCT6A_D442N_5	HLA-C03:04	QAFANALLI	0.9848	0.9876	0.1441	56.16	0.214	266.9	1/982	1/7748
SNV	Breast	CDH13_S425P_4	HLA-A02:01	GMLPVVKPL	0.9833	0.6968	0.3157	96.42	0.3868	6.89	1/982	1/7748
SNV	Breast	DIAPH2_K293E_4	HLA-A02:01	ILDELLGAI	0.9883	0.7169	0.2625	9.53	0.1548	7.31	1/982	1/7748
SNV	Breast	DIAPH2_K293E_1	HLA-A02:01	ELLGAITTA	0.8402	0.7388	0.8054	495.19	0.6733	7.31	1/982	1/7748
SNV	Breast	E2F4_E99K_1	HLA-A02:01	KLKAEIEEL	0.9847	0.772	0.797	38.86	0.2772	30.76	1/982	1/7748
SNV	Breast	FAM91A1_L421V_6	HLA-A02:01	SLDSFVIEL	0.9951	0.5796	0.1706	1.35	0.0152	87.55	1/982	1/7748
SNV	Breast	HEATR1_R728K_4	HLA-C03:04	FAIKVFSLL	0.9998	0.9882	0.0015	6.52	0.0601	13.94	1/982	1/7748
SNV	Breast	IL27RA_H507Y_3	HLA-A02:01	RLYLPDNTL	0.9561	0.7625	1.4656	74.13	0.353	8.94	1/982	1/7748
SNV	Breast	IL27RA_H507Y_1	HLA-A02:01	YLPDNTLRWKV	0.9836	0.638	0.8558	60.94	0.3278	8.94	1/982	1/7748
SNV	Breast	IL27RA_H507Y_3	HLA-A32:01	RLYLPDNTL	0.9724	0.9872	0.1635	10.67	0.0409	8.94	1/982	1/7748
SNV	Breast	IL27RA_H507Y_1	HLA-A32:01	YLPDNTLRW	0.9481	0.9895	0.5321	317.75	0.2406	8.94	1/982	1/7748
SNV	Breast	IL27RA_H507Y_3	HLA-A32:01	RLYLPDNTLRW	0.9997	0.9985	0.2803	422.54	0.2682	8.94	1/982	1/7748
SNV	Breast	IL27RA_H507Y_1	HLA-B57:01	YLPDNTLRW	0.9869	0.9867	0.5757	490.97	0.4873	8.94	1/982	1/7748
SNV	Breast	IL27RA_H507Y_3	HLA-C03:04	RLYLPDNTL	0.8185	0.9937	1.345	70.98	0.2387	8.94	1/982	1/7748
SNV	Breast	MACF1_K6655N_8	HLA-B57:01	KSVERQHNL	0.9972	0.9593	0.475	10.98	0.1133	18.1	1/982	1/7748
SNV	Breast	MAPK8_R150W_8	HLA-B57:01	HSAGIIHW	0.9998	0.956	0.4587	3.83	0.0483	14.5	1/982	1/7748
SNV	Breast	MPP6_E79K_8	HLA-C03:04	NVDENVAKL	0.9964	0.9898	0.0668	236.48	0.3843	1.04	1/982	1/7748
SNV	Breast	PCDHB4_R547H_9	HLA-A02:01	ALSSEALVHV	0.9985	0.7698	0.1939	5.95	0.1168	1.74	1/982	1/7748
SNV	Breast	PPHLN1_S213Y_4	HLA-C03:04	SAVYSSKVL	0.9992	0.9906	0.2614	36.88	0.179	16.76	1/982	1/7748
SNV	Breast	SYNE2_S2315Y_1	HLA-C03:04	YVKQNTSSV	0.7222	0.9574	0.5296	170.62	0.3396	10.36	1/982	1/7748
SNV	Breast	TMEM67_E224Q_8	HLA-B57:01	VGMSLTSQW	0.9988	0.9924	0.0354	7.04	0.0842	1.6	1/982	1/7748
SNV	Breast	TRDMT1_E202Q_6	HLA-C03:04	YAMDVQNKI	0.9996	0.9846	0.0104	1.61	0.0109	1.42	1/982	1/7748
SNV	Breast	TRNT1_L269S_3	HLA-C03:04	IGSPANASL	0.9993	0.9559	0.2284	32.04	0.1698	12.4	1/982	1/7748
SNV	Breast	TTI2_E385V_3	HLA-A32:01	RLVRVIIGY	0.9718	0.5831	0.1175	21.83	0.0633	10.62	1/982	1/7748
SNV	Breast	UNC119B_F144Y_5	HLA-C06:02	VRYQYTPAFL	0.8703	0.9722	0.2004	326.42	0.1658	27.93	1/982	1/7748
SNV	Breast	WASF1_P231Q_5	HLA-B57:01	VANGQASHF	0.9852	0.9823	0.3535	167.14	0.3395	4.32	1/982	1/7748
SNV	Breast	ZBTB14_G290S_7	HLA-B57:01	KTFSDESRL	0.9915	0.964	0.5305	31.75	0.1969	12	1/982	1/7748
SNV	Breast	ZNF207_H53Y_9	HLA-B57:01	YTGPGLAIY	0.6334	0.984	0.8446	479.2	0.4841	20.95	1/982	1/7748
SNV	Breast	ZWINT_A151E_2	HLA-B40:01	REVQNQWQL	0.9954	0.5049	0.0103	1.13	0.0145	156.89	1/982	1/7748
SNV	Breast	ZWINT_A151E_8	HLA-C03:04	MAMEKRREV	0.985	0.9791	0.1116	118.23	0.2919	156.89	1/982	1/7748
SNV	Breast	ACVRL1_Q447H_5	HLA-C15:05	CVDQHTPTI	0.9823	0.8293	0.0665	209.54	0.373	17.96	1/982	1/7748
SNV	Breast	ACVRL1_Q447H_1	HLA-C15:05	HTPTIPNRL	0.9831	0.7947	0.2031	240.69	0.3954	17.96	1/982	1/7748
SNV	Breast	BCKDHB_S358L_9	HLA-A02:01	FLNLEAPIL	0.9893	0.5469	0.49	10.22	0.1604	31.76	1/982	1/7748
SNV	Breast	BCKDHB_S358L_7	HLA-A02:01	NLEAPILRV	0.9287	0.6619	1.1014	268.65	0.5547	31.76	1/982	1/7748
SNV	Breast	CALD1_R484G_2	HLA-B08:01	DGKKGFTEV	0.9515	0.6084	0.6634	363.53	0.2928	124.17	1/982	1/7748
SNV	Breast	FAM188A_M347I_5	HLA-C15:05	YINLIKNKL	0.9608	0.8968	0.7332	284.02	0.4305	21.81	1/982	1/7748
SNV	Breast	GPBP1L1_G181A_1	HLA-A02:01	AVWENPPSA	0.9307	0.5644	0.5524	28.09	0.2461	74.56	1/982	1/7748
SNV	Breast	HECTD1_E1998Q_3	HLA-C15:05	GVQDVLQLL	0.9965	0.9434	0.4422	184.61	0.3526	76.7	1/982	1/7748
SNV	Breast	IQUB_Q535E_4	HLA-A02:01	KLTEEILEL	0.9991	0.7238	0.2395	1.38	0.0163	1.13	1/982	1/7748
SNV	Breast	IQUB_Q535E_4	HLA-A02:01	KLTEEILELI	0.9966	0.6864	0.6827	101.2	0.3931	1.13	1/982	1/7748
SNV	Breast	IQUB_Q535E_4	HLA-C15:05	KLTEEILEL	0.9885	0.8974	0.5152	283.91	0.4304	1.13	1/982	1/7748
SNV	Breast	JAK1_G600W_7	HLA-C15:05	RTHIYSWTL	0.996	0.9029	0.3361	100.76	0.2636	178.09	1/982	1/7748
SNV	Breast	LIMA1_E258Q_5	HLA-C07:01	RRNLQLPRL	0.9985	0.8002	0.0876	84.85	0.0807	122.69	1/982	1/7748
SNV	Breast	LRRC57_L64M_9	HLA-B08:01	LLIGKFTLM	0.9839	0.6423	0.0814	262.4	0.2579	15.66	1/982	1/7748
SNV	Breast	LRRC57_L64M_4	HLA-B08:01	FTLMKSLSL	0.9979	0.6586	0.0226	266.23	0.2595	15.66	1/982	1/7748
SNV	Breast	LRRC57_L64M_4	HLA-C15:05	FTLMKSLSL	0.9986	0.8645	0.2256	18.48	0.0869	15.66	1/982	1/7748
SNV	Breast	MBD6_L543V_7	HLA-A02:01	MLGALPVPL	0.9913	0.8096	0.1953	92.33	0.3813	38.46	1/982	1/7748
SNV	Breast	MBD6_L543V_5	HLA-C15:05	GALPVPLSL	0.9989	0.9724	0.0762	6.71	0.0349	38.46	1/982	1/7748
SNV	Breast	NDUFAB1_E96K_5	HLA-A02:01	KIDPKKLSV	0.9452	0.5564	0.8135	426.03	0.6401	140.26	1/982	1/7748
SNV	Breast	NDUFAB1_E96K_9	HLA-A02:01	KLYDKIDPKKL	0.9981	0.6019	0.9749	307.44	0.5766	140.26	1/982	1/7748
SNV	Breast	NDUFAB1_E96K_5	HLA-C15:05	KIDPKKLSV	0.9982	0.8603	0.0948	13.16	0.0644	140.26	1/982	1/7748
SNV	Breast	OLFM2_G435S_6	HLA-A02:01	YTWNNSHQV	0.9757	0.507	0.1151	5.2	0.1071	12.49	1/982	1/7748
SNV	Breast	OLFM2_G435S_6	HLA-C15:05	YTWNNSHQV	0.9992	0.9155	0.0156	3.94	0.0162	12.49	1/982	1/7748
SNV	Breast	OLFM2_G435S_6	HLA-C15:05	YTWNNSHQVL	0.999	0.9116	0.7086	428.04	0.5225	12.49	1/982	1/7748
SNV	Breast	PCGF1_L96I_9	HLA-C15:05	KIHETQPLI	0.9958	0.9443	0.4475	152.5	0.3217	18.68	1/982	1/7748
SNV	Breast	PCGF1_L96R_4	HLA-B08:01	QPLRNLKL	0.9911	0.5419	0.4504	461.78	0.323	18.68	1/982	1/7748
SNV	Breast	PHF3_P1854S_2	HLA-C15:05	VSWPPVVHL	0.9998	0.9399	0.0134	4.16	0.0173	50.25	1/982	1/7748
SNV	Breast	PHF3_P1854S_3	HLA-C15:05	MVSWPPVVHL	0.9992	0.9611	0.6723	173.36	0.3424	50.25	1/982	1/7748
SNV	Breast	PPP2R2D_A387V_9	HLA-C07:01	TRRDVTLEV	0.8911	0.7441	0.0705	51.44	0.0664	20.6	1/982	1/7748
SNV	Breast	RBM14_S225C_8	HLA-C07:01	RRSPPRACY	0.9897	0.5831	0.2095	287.07	0.1341	73.14	1/982	1/7748
SNV	Breast	TBC1D22B_R345Q_7	HLA-C15:05	LSQDMLQSI	0.9995	0.8842	0.1467	484.71	0.5514	23.67	1/982	1/7748
SNV	Breast	UBR4_D4289N_8	HLA-A02:01	KLIDETQNM	0.9954	0.7323	0.4301	3.21	0.0706	31.44	1/982	1/7748
SNV	Breast	UBR4_D4289N_7	HLA-A02:01	LIDETQNML	0.9613	0.5178	0.9515	250.11	0.5432	31.44	1/982	1/7748
SNV	Breast	UBR4_D4289N_8	HLA-A02:01	KLIDETQNML	0.998	0.7538	0.5871	11.06	0.1667	31.44	1/982	1/7748
SNV	Breast	UBR4_D4289N_8	HLA-A02:01	KLIDETQNMLL	0.9996	0.7359	0.5779	7.86	0.1389	31.44	1/982	1/7748
SNV	Breast	UBR4_D4289N_7	HLA-C15:05	LIDETQNML	0.9927	0.9289	0.0406	13.55	0.066	31.44	1/982	1/7748
SNV	Breast	UTP23_S106Y_9	HLA-A01:01	VSGSECLLY	0.9662	0.5244	0.041	13.01	0.2077	19.11	1/982	1/7748
SNV	Breast	UTP23_S106Y_10	HLA-A01:01	AVSGSECLLY	0.9447	0.5128	0.0696	141.47	0.439	19.11	1/982	1/7748
SNV	Breast	ZNF266_S448Y_6	HLA-C15:05	KAFTHYSSL	0.9992	0.7672	0.0177	39.16	0.152	21.45	1/982	1/7748
SNV	Breast	ZNF43_D794H_7	HLA-A02:01	KLYKPEHVTV	0.9952	0.756	0.5218	9.03	0.1505	28.66	1/982	1/7748
SNV	Breast	CSNK1G3_I147V_7	HLA-A31:01	MIAIQLVSR	0.9288	0.6336	0.2179	222.96	0.3079	41.26	1/982	1/7748
SNV	Breast	CSNK1G3_I147V_6	HLA-C03:03	IAIQLVSRM	0.9996	0.9887	0.2269	14.3	0.1074	41.26	1/982	1/7748
SNV	Breast	MYO5B_R799W_4	HLA-A31:01	RYCWGHLAR	0.9805	0.7407	0.1437	93.65	0.2013	24.58	1/982	1/7748
SNV	Breast	MYO5B_R799W_4	HLA-A31:01	RYCWGHLARR	0.9851	0.7991	0.3374	53.17	0.1527	24.58	1/982	1/7748
SNV	Breast	STK11IP_T405M_2	HLA-C04:01	DMDPEPRTL	0.9999	0.7269	0.0343	406.98	0.1396	18.13	1/982	1/7748
SNV	Breast	BRINP1_R52M_9	HLA-C07:01	DRGPFHHSM	0.9899	0.703	0.2886	234.95	0.1219	1.72	1/982	1/7748
SNV	Breast	CLPTM1_F307L_8	HLA-B08:01	SLPLRVSL	0.9998	0.7683	0.2899	37.34	0.0967	96.5	1/982	1/7748
SNV	Breast	CLPTM1_F307L_9	HLA-C03:03	ASLPLRVSL	0.9997	0.9941	0.1654	24.33	0.1532	96.5	1/982	1/7748
SNV	Breast	DCAF4L1_C178W_7	HLA-A24:02	NQPGMLWSF	0.957	0.8206	0.1941	23.4	0.2879	21.35	1/982	1/7748
SNV	Breast	DCAF4L1_C178W_2	HLA-A24:02	LWSFQIPEAW	0.9878	0.7471	0.4981	455.66	0.6808	21.35	1/982	1/7748
SNV	Breast	DDR1_R609Q_6	HLA-A24:02	DFPRSQLRF	0.9915	0.5478	0.5775	21.38	0.2801	31.33	1/982	1/7748
SNV	Breast	DDR1_R609Q_1	HLA-B08:01	QLRFKEKL	0.9989	0.6572	0.0744	145.23	0.2052	31.33	1/982	1/7748
SNV	Breast	DDR1_R609Q_8	HLA-C03:03	RVDFPRSQL	0.9901	0.9902	0.3896	145.34	0.3176	31.33	1/982	1/7748
SNV	Breast	LRRN1_C447R_6	HLA-C03:03	TVFLDRRAM	0.9833	0.9885	0.7719	349.07	0.4445	2.98	1/982	1/7748
SNV	Breast	MAP3K8_D356Y_1	HLA-C03:03	YCSPGMREL	0.9971	0.9639	0.2318	238.6	0.3855	3.42	1/982	1/7748
SNV	Breast	PCDHB16_T420I_8	HLA-C07:01	ARAEYNIIL	0.993	0.8043	0.0375	28.39	0.0466	3.13	1/982	1/7748
SNV	Breast	PCYT1A_R218S_2	HLA-B15:01	ASRNLQRGY	0.9869	0.8981	0.7153	262.51	0.4089	55.2	1/982	1/7748
SNV	Breast	PITRM1_A726V_5	HLA-C03:03	ASIRVGRTL	0.9988	0.9233	0.2674	95.82	0.2701	47.36	1/982	1/7748
SNV	Breast	SERPINA1_P2A_9	HLA-C03:03	SSVSWGILL	0.9989	0.9906	0.1417	259.85	0.3972	76.74	1/982	1/7748
SNV	Breast	ZSCAN16_D96H_5	HLA-A24:02	ILPKHLQAW	0.9877	0.929	0.4542	31.39	0.3163	24.4	1/982	1/7748
SNV	Breast	AKT1_E17K_4	HLA-B27:05	KRGKYIKTW	0.9971	0.9208	0.6419	408.5	0.575	28.38	2/982	3/7748
SNV	Breast	COL1A2_G835S_7	HLA-B27:05	GRTGEVSAV	0.9989	0.6348	0.5181	221.06	0.4957	1342.53	1/982	1/7748
SNV	Breast	FAM227B_E123K_5	HLA-B27:05	ERYGKFLKK	0.9989	0.8564	0.1389	26.77	0.2728	2.57	1/982	1/7748
SNV	Breast	FAM227B_E123K_5	HLA-B27:05	ERYGKFLKKY	0.9998	0.7581	0.1824	84	0.3886	2.57	1/982	1/7748
SNV	Breast	HS6ST2_L433R_2	HLA-B27:05	GRTEFQRKTQY	0.9999	0.639	0.0902	60.82	0.3542	4.97	1/982	1/7748
SNV	Breast	HS6ST2_L433R_6	HLA-C07:02	MAFFGRTEF	0.995	0.9525	0.5283	106.21	0.2001	4.97	1/982	1/7748
SNV	Breast	HS6ST2_L433R_6	HLA-C03:03	MAFFGRTEF	0.9994	0.9878	0.0348	3.15	0.0329	4.97	1/982	1/7748
SNV	Breast	MYNN_D64Y_3	HLA-A02:01	FLYQSQVKA	0.9939	0.5556	0.0731	3.28	0.0717	21.26	1/982	1/7748
SNV	Breast	NINL_R142H_5	HLA-C07:02	SHLWHSASL	0.7525	0.9803	0.484	495.43	0.3961	6.28	1/982	1/7748
SNV	Breast	PRKDC_P737L_3	HLA-A02:01	SLLHNIIEL	0.994	0.7695	0.1073	1.38	0.0163	50.66	1/982	1/7748
SNV	Breast	RNF219_I538M_2	HLA-A02:01	KMSELDSMM	0.969	0.6882	0.4853	180.29	0.4896	7.7	1/982	1/7748
SNV	Breast	RNF219_I538M_6	HLA-C07:02	AYLDKMSEL	0.7117	0.9807	0.1019	8.94	0.0427	7.7	1/982	1/7748
SNV	Breast	SEZ6L_P90L_7	HLA-A02:01	VLDGTALSA	0.9751	0.5003	0.6165	435.91	0.6452	3.95	1/982	1/7748
SNV	Breast	TRAV23DV6_D59G_1	HLA-C07:02	GYFPWYQQF	0.5981	0.988	0.0181	3.08	0.0094	1.82	1/982	1/7748
SNV	Breast	ALG8_P330S_4	HLA-C16:01	TVLSSVTPL	0.9455	0.9798	0.8925	45.81	0.2767	55.37	1/982	1/7748
SNV	Breast	ALG8_P330S_1	HLA-C16:01	SSVTPLATL	0.9414	0.9721	0.0431	9.22	0.0939	55.37	1/982	1/7748
SNV	Breast	AMACR_R326H_3	HLA-C16:01	SPHPAPLLL	0.5993	0.9799	0.4879	49.69	0.2881	4.2	1/982	1/7748
SNV	Breast	ARHGAP29_R873C_8	HLA-B44:03	AEYSNQACL	0.9866	0.9283	0.2505	47.83	0.2232	30.57	1/982	1/7748
SNV	Breast	ATP6V0B_A108E_8	HLA-C16:01	AIYGIIMEI	0.9568	0.9678	1.2308	29.55	0.2115	89.4	1/982	1/7748
SNV	Breast	CATSPERG_A802V_10	HLA-B13:02	SQVDVGVVLV	0.9089	0.7412	0.164	260	0.096	1.28	1/982	1/7748
SNV	Breast	CENPF_T14I_9	HLA-B44:03	EEWKEGLPI	0.9785	0.9568	0.2037	286.61	0.3652	34.12	1/982	1/7748
SNV	Breast	CENPF_T14I_6	HLA-B44:03	KEGLPIRAL	0.9647	0.9366	0.3312	29.93	0.1814	34.12	1/982	1/7748
SNV	Breast	CHD9_K1075Q_5	HLA-C16:01	QAILQPMML	0.9196	0.9898	0.3891	50.77	0.2911	17.6	1/982	1/7748
SNV	Breast	CLASP2_I98T_8	HLA-C16:01	TLNKIRETL	0.856	0.9727	1.3744	273.48	0.6664	11.64	1/982	1/7748
SNV	Breast	DLGAP4_G840R_6	HLA-B44:03	SEEVLRKVL	0.99	0.9334	0.3121	260.41	0.3577	47.02	1/982	1/7748
SNV	Breast	ELOVL6_S109R_8	HLA-A30:01	GFYNGPVRK	0.8942	0.839	0.621	204.99	0.0902	11.42	1/982	1/7748
SNV	Breast	FAM214A_V154L_4	HLA-C16:01	RSFLFFSQL	0.957	0.9893	0.0969	67.19	0.344	13.49	1/982	1/7748
SNV	Breast	HUWE1_G602A_7	HLA-A30:01	ATREVLASL	0.9679	0.9452	0.0555	60.59	0.0299	109.18	1/982	1/7748
SNV	Breast	HUWE1_G602A_7	HLA-C16:01	ATREVLASL	0.8812	0.9807	0.2141	12.09	0.1159	109.18	1/982	1/7748
SNV	Breast	HUWE1_G602A_3	HLA-C16:01	VLASLPNVF	0.7269	0.9794	0.7219	223.24	0.6072	109.18	1/982	1/7748
SNV	Breast	IFT46_P228T_5	HLA-C16:01	KVSLTTAEI	0.7653	0.9638	1.8148	338.85	0.7281	21.22	1/982	1/7748
SNV	Breast	INPP5J_T434N_7	HLA-C16:01	VTWNVGNAM	0.822	0.9865	0.1364	25.12	0.1917	29.32	1/982	1/7748
SNV	Breast	IQCD_V401L_9	HLA-B44:03	AEQEMVRML	0.999	0.9523	0.1384	1.69	0.0302	3.68	1/982	1/7748
SNV	Breast	IQCD_V401L_9	HLA-B13:02	AEQEMVRML	0.9983	0.5366	0.0571	333.29	0.1169	3.68	1/982	1/7748
SNV	Breast	IRAK2_H228Y_5	HLA-A30:01	VYRGYRHGK	0.9653	0.7898	0.2691	163.44	0.0777	2.44	1/982	1/7748
SNV	Breast	KIT_G432E_2	HLA-B44:03	AEFPEPTIDW	0.9995	0.9826	0.0044	1.23	0.0082	26.32	1/982	1/7748
SNV	Breast	KIT_G432E_2	HLA-B44:03	AEFPEPTIDWY	0.9981	0.9709	0.0275	3.93	0.0762	26.32	1/982	1/7748
SNV	Breast	KIT_G432E_2	HLA-B13:02	AEFPEPTI	0.9998	0.6543	0.3802	96.92	0.0502	26.32	1/982	1/7748
SNV	Breast	KLHDC10_G209A_4	HLA-A30:01	RIYAQAMAI	0.9804	0.9077	0.264	473.33	0.1699	62.52	1/982	1/7748
SNV	Breast	KLHDC10_G209A_4	HLA-C16:01	RIYAQAMAI	0.8939	0.9857	1.4525	5.14	0.0491	62.52	1/982	1/7748
SNV	Breast	LCP2_V469L_2	HLA-A30:01	KLYNIQIRY	0.8852	0.7532	0.6883	355.55	0.1349	11.92	1/982	1/7748
SNV	Breast	LMOD1_A376V_7	HLA-C16:01	RADDHVVF	0.9986	0.938	0.3575	340.28	0.7293	32.74	1/982	1/7748
SNV	Breast	LMOD1_A376V_2	HLA-C16:01	VVFAIAIML	0.7955	0.9636	1.0535	101.03	0.4274	32.74	1/982	1/7748
SNV	Breast	LZTS1_D39G_5	HLA-C06:02	NRYSGGLLRF	0.9623	0.9913	0.187	71.53	0.0807	14.32	1/982	1/7748
SNV	Breast	MACF1_I2465M_7	HLA-C16:01	TVRERLMSL	0.7295	0.9755	0.6458	9.88	0.0984	30.87	1/982	1/7748
SNV	Breast	MAML2_P799T_6	HLA-A30:01	LSRPPTDYK	0.9956	0.6814	0.0534	39.53	0.0194	21.04	1/982	1/7748
SNV	Breast	MAP2_M809I_9	HLA-C16:01	VMAPDLPEI	0.9412	0.9635	1.863	308.44	0.7015	4.16	1/982	1/7748
SNV	Breast	MAP2_M809I_8	HLA-C16:01	MAPDLPEIL	0.9513	0.972	0.1509	245.3	0.6347	4.16	1/982	1/7748
SNV	Breast	MIF4GD_S13Y_7	HLA-B44:03	EEYKIQYF	0.9997	0.828	0.1984	63.06	0.2489	73.48	1/982	1/7748
SNV	Breast	MIF4GD_S13Y_8	HLA-B44:03	REEYKIQYF	0.9957	0.8216	0.2808	3.64	0.0726	73.48	1/982	1/7748
SNV	Breast	MIF4GD_S13Y_1	HLA-C16:01	YFDAETQQL	0.9991	0.9595	0.667	485.96	0.8346	73.48	1/982	1/7748
SNV	Breast	MRPS22_P207A_5	HLA-A30:01	KILTAIIFK	0.9889	0.8454	0.025	150.98	0.074	17.36	1/982	1/7748
SNV	Breast	NEDD9_R25H_4	HLA-C16:01	LAFHKGDIL	0.7896	0.9665	0.1226	26.31	0.196	38.54	1/982	1/7748
SNV	Breast	NLRC5_M1543T_6	HLA-C16:01	GTKALTRAL	0.6538	0.9638	1.1405	415.98	0.7863	6.11	1/982	1/7748
SNV	Breast	NLRP3_R660I_8	HLA-B44:03	IEINLSTIM	0.9573	0.9149	0.2291	352.43	0.3815	2.05	1/982	1/7748
SNV	Breast	NLRP3_R660I_1	HLA-C16:01	IMDHMVSSF	0.9944	0.9761	0.1226	271.97	0.6648	2.05	1/982	1/7748
SNV	Breast	NPHP1_S628R_4	HLA-A30:01	ALRRSWAGK	0.989	0.9682	0.0686	408.47	0.1537	1.73	1/982	1/7748
SNV	Breast	OMA1_L82V_5	HLA-A30:01	RTGGVSSTK	0.996	0.916	0.0271	64.87	0.032	15.69	1/982	1/7748
SNV	Breast	PCNT_R636H_8	HLA-C16:01	SALGHEWHL	0.7671	0.9942	0.069	145.48	0.503	21.05	1/982	1/7748
SNV	Breast	RUFY3_A437S_6	HLA-C16:01	KTNQMSATI	0.8684	0.9647	0.8003	88.56	0.4002	12.36	1/982	1/7748
SNV	Breast	SLC35F2_L244I_8	HLA-C16:01	TIISGIQIL	0.9529	0.8996	0.8003	85.13	0.3922	40.91	1/982	1/7748
SNV	Breast	SLC39A6_P38Q_6	HLA-B44:03	TEKISQNW	0.9995	0.9678	0.2143	71.97	0.259	5930.23	1/982	1/7748
SNV	Breast	SOCS4_Q168L_6	HLA-C16:01	STDLSLTEL	0.8599	0.9743	0.2838	260.77	0.6526	28	1/982	1/7748
SNV	Breast	SPTBN4_G522E_8	HLA-B13:02	RQWALLTEL	0.8809	0.8758	0.0381	174.16	0.069	1.59	1/982	1/7748
SNV	Breast	STAT4_Q199R_7	HLA-B44:03	QEVLTLREM	0.9994	0.9903	0.1055	7.59	0.1081	3.79	1/982	1/7748
SNV	Breast	STAT4_Q199R_1	HLA-B44:03	REMLNSLDF	0.9909	0.9271	0.1331	6.47	0.0992	3.79	1/982	1/7748
SNV	Breast	STAT4_Q199R_3	HLA-C16:01	TLREMLNSL	0.7197	0.9742	1.7834	126.95	0.4745	3.79	1/982	1/7748
SNV	Breast	SYNE2_Q2847P_8	HLA-C16:01	FAIIRKFPL	0.9858	0.9749	0.0668	166.91	0.536	19.28	1/982	1/7748
SNV	Breast	TLE4_V422L_9	HLA-C16:01	AAYGRSPVL	0.994	0.9801	0.0158	1.35	0.0044	5.52	1/982	1/7748
SNV	Breast	TLE4_V422L_1	HLA-C16:01	LGFDPHHHM	0.8551	0.9926	0.0515	28.25	0.2045	5.52	1/982	1/7748
SNV	Breast	TLE4_V422L_10	HLA-C16:01	AAAYGRSPVL	0.9959	0.979	1.832	284.05	0.6775	5.52	1/982	1/7748
SNV	Breast	TMTC1_I358T_7	HLA-C06:02	MRNLATTF	0.9388	0.9976	1.0465	428.68	0.192	6.48	1/982	1/7748
SNV	Breast	TRMT12_E200V_7	HLA-B13:02	GDHGWVVHV	0.8856	0.8781	0.3048	139.51	0.063	37.82	1/982	1/7748
SNV	Breast	WWC3_A201V_3	HLA-B44:03	GDVGVPQQF	0.6822	0.7119	0.2537	143.86	0.3111	29.74	1/982	1/7748
SNV	Breast	ZNF470_L53F_3	HLA-C16:01	VMFENYRNL	0.9156	0.9595	0.811	94.29	0.4131	4.1	1/982	1/7748
SNV	Breast	ZNF546_S59P_7	HLA-A30:01	KTMANVPLA	0.9785	0.7263	0.0909	62.14	0.0307	4.19	1/982	1/7748
SNV	Breast	ZNF546_S59P_5	HLA-C16:01	MANVPLAF	0.9986	0.9481	0.1765	107.5	0.4402	4.19	1/982	1/7748
SNV	Breast	ZNF546_S59P_6	HLA-C16:01	TMANVPLAF	0.8998	0.9362	0.3356	34.25	0.2345	4.19	1/982	1/7748
SNV	Breast	ZNF546_S59P_7	HLA-C16:01	KTMANVPLAF	0.9971	0.9415	0.6458	276.53	0.6697	4.19	1/982	1/7748
SNV	Breast	ITPR1_V2488I_9	HLA-B39:01	DRLPNETAI	0.9935	0.905	0.0555	12.18	0.0616	26.55	1/982	1/7748
SNV	Breast	LILRA2_G174E_4	HLA-C12:03	HAREWSWAI	0.8085	0.9894	0.2699	37.17	0.3167	2.83	1/982	1/7748
SNV	Breast	MTOR_A475G_8	HLA-C12:03	FAHKRQKGM	0.8507	0.9599	0.0362	26.56	0.2529	25.92	1/982	1/7748
SNV	Breast	SPAG5_I105V_6	HLA-B55:01	QPLDPVPQI	0.6175	0.6913	0.0948	147.36	0.0871	15.58	1/982	1/7748
SNV	Breast	TIGD6_L106V_3	HLA-C03:03	KAVNLANML	0.9956	0.9911	0.1883	27.09	0.1597	10.94	1/982	1/7748
SNV	Breast	TIGD6_L106V_7	HLA-C12:03	VIRKKAVNL	0.9794	0.9771	1.986	492.36	1.0687	10.94	1/982	1/7748
SNV	Breast	TIGD6_L106V_3	HLA-C12:03	KAVNLANML	0.9447	0.9673	0.2566	19.62	0.2068	10.94	1/982	1/7748
SNV	Breast	UBE2Q2_P68L_8	HLA-C12:03	ESYPSSSLI	0.7076	0.9798	1.031	211.33	0.7538	36.41	1/982	1/7748
SNV	Breast	ZNF350_I128M_9	HLA-A02:01	FLLGQNHDM	0.9475	0.7309	0.1465	6.07	0.1184	7.47	1/982	1/7748
SNV	Breast	AGGF1_Y469N_9	HLA-C04:01	YFDHDLQSNV	0.9997	0.8365	0.1424	115.57	0.0774	27.3	1/982	1/7748
SNV	Breast	AGGF1_Y469N_9	HLA-C04:01	YFDHDLQSNVL	1	0.8326	0.1565	247.15	0.111	27.3	1/982	1/7748
SNV	Breast	ARHGAP31_I205N_8	HLA-B27:05	VRVQQVVNEF	1	0.5992	0.0855	14.47	0.2235	19.27	1/982	1/7748
SNV	Breast	ARHGAP31_I205N_7	HLA-C02:02	RVQQVVNEF	0.6885	0.9682	0.0981	60.29	0.1202	19.27	1/982	1/7748
SNV	Breast	BEX2_R87K_10	HLA-B27:05	ARMREENMEK	0.9996	0.7323	0.1055	179.48	0.4725	12.48	1/982	1/7748
SNV	Breast	BHLHB9_V350I_7	HLA-B27:05	ARIAMGIHNV	0.9999	0.7884	0.2193	25.56	0.2688	3.08	1/982	1/7748
SNV	Breast	FGFR2_V113A_2	HLA-B53:01	TADSETWYF	0.8518	0.5244	0.4316	20.21	0.0848	5.79	1/982	1/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:05	ARHGGWTTK	0.9983	0.8261	0.1474	11.97	0.2093	13.16	11/982	17/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:05	ARHGGWTTKM	0.9998	0.666	0.0388	24.5	0.2651	13.16	11/982	17/7748
SNV	Breast	PTGFRN_L777W_9	HLA-B27:05	ERVSVLEFW	0.9949	0.8794	1.7651	387.66	0.5681	73.46	1/982	1/7748
SNV	Breast	SLC12A6_M60I_6	HLA-B27:05	SRSEPISEM	0.9997	0.9538	0.1549	5.31	0.1464	8.72	1/982	1/7748
SNV	Breast	DCHS1_P2307L_7	HLA-B44:02	NDVDSGLVLW	0.9837	0.7253	0.3573	270.69	0.3478	3.62	1/982	1/7748
SNV	Breast	PDIK1L_L283I_1	HLA-C05:01	ILENPKMEL	0.9999	0.9483	0.0819	6.59	0.07	16.28	1/982	1/7748
SNV	Breast	VCAM1_N225Y_6	HLA-C01:02	YISPKYTVI	0.8567	0.8563	0.1184	301.75	0.0286	4.63	1/982	1/7748
SNV	Breast	VCAM1_N225Y_6	HLA-C05:01	YISPKYTVI	0.9642	0.8879	0.3942	102.34	0.2228	4.63	1/982	1/7748
SNV	Breast	WBP2_K111R_6	HLA-A32:01	GSASYRLTF	0.9884	0.9523	0.2109	61.72	0.1156	137.03	1/982	1/7748
SNV	Breast	ABCC4_S46L_9	HLA-A02:01	RLEEDDMYL	0.9787	0.7705	0.6242	3.54	0.0754	3.25	1/982	1/7748
SNV	Breast	ABCC4_S46L_9	HLA-A02:01	RLEEDDMYLV	0.998	0.7021	0.6314	90.18	0.3782	3.25	1/982	1/7748
SNV	Breast	ABCC4_S46L_10	HLA-B27:05	RRLEEDDMYL	0.9997	0.8393	0.0315	8.89	0.1848	3.25	1/982	1/7748
SNV	Breast	CACNA1C_L1337F_6	HLA-C02:02	NTFDAFIVV	0.5505	0.9693	0.4226	273.18	0.3225	1.44	1/982	1/7748
SNV	Breast	CAPN6_D599H_8	HLA-A02:01	FLGQVTLHA	0.9927	0.5499	0.0495	23.55	0.2312	2.47	1/982	1/7748
SNV	Breast	CFAP70_E36K_4	HLA-C07:02	IRAKFNQVV	0.8029	0.8997	0.3636	366.21	0.3515	1.04	1/982	1/7748
SNV	Breast	CHMP7_Q350E_5	HLA-A02:01	SLVDEIQEL	0.9978	0.6358	0.2489	1.22	0.0122	65.99	1/982	1/7748
SNV	Breast	CHMP7_Q350E_5	HLA-C02:02	SLVDEIQEL	0.7534	0.9724	0.2389	67.44	0.1285	65.99	1/982	1/7748
SNV	Breast	CLIC1_F41L_9	HLA-A02:01	VLWLKGVTL	0.9654	0.6297	0.613	25.54	0.2381	451.09	1/982	1/7748
SNV	Breast	CLIC1_F41L_7	HLA-A02:01	WLKGVTLNV	0.9601	0.5895	0.2775	433.55	0.644	451.09	1/982	1/7748
SNV	Breast	COL6A3_G1313V_3	HLA-A02:01	NVVNALEYV	0.9446	0.516	1.1395	496.51	0.6739	136.21	1/982	1/7748
SNV	Breast	COL6A3_G1313V_7	HLA-B27:05	GRQINVVNAL	0.9998	0.7964	0.478	2.12	0.068	136.21	1/982	1/7748
SNV	Breast	COL6A3_G1313V_11	HLA-B07:02	RPKGGRQINVV	0.9998	0.641	0.2125	62.63	0.2249	136.21	1/982	1/7748
SNV	Breast	COL6A3_G1313V_6	HLA-C02:02	RQINVVNAL	0.9532	0.9769	1.0308	136.57	0.2043	136.21	1/982	1/7748
SNV	Breast	CRYBG3_Q2371K_1	HLA-B27:05	KRNFILGSL	0.9996	0.9416	0.2829	2.54	0.0801	4.08	1/982	1/7748
SNV	Breast	CRYBG3_Q2371K_5	HLA-B27:05	RRHPKRNFIL	0.9999	0.9049	0.4321	353	0.5559	4.08	1/982	1/7748
SNV	Breast	CRYBG3_Q2371K_1	HLA-B27:05	KRNFILGSLK	0.9999	0.9353	0.2085	193.44	0.4809	4.08	1/982	1/7748
SNV	Breast	CRYBG3_Q2371K_5	HLA-C07:02	RRHPKRNFI	0.8941	0.9428	0.1834	48.72	0.1304	4.08	1/982	1/7748
SNV	Breast	CRYBG3_Q2371K_1	HLA-C07:02	KRNFILGSL	0.9601	0.9632	0.1356	100.94	0.1951	4.08	1/982	1/7748
SNV	Breast	CUL4B_D895N_8	HLA-B27:05	KRIESLINR	0.9996	0.878	0.1113	1.81	0.0526	48.53	1/982	1/7748
SNV	Breast	CUL4B_D895N_8	HLA-B27:05	KRIESLINRDY	0.9999	0.7407	0.2732	7.22	0.1682	48.53	1/982	1/7748
SNV	Breast	DIEXF_T678K_4	HLA-B27:05	KRYKIKGIR	0.9977	0.7966	0.2409	267.27	0.5197	10.21	1/982	1/7748
SNV	Breast	DIEXF_T678K_4	HLA-B27:05	KRYKIKGIRNL	0.9999	0.9184	0.0948	283.41	0.5273	10.21	1/982	1/7748
SNV	Breast	DIEXF_T678K_2	HLA-C07:02	YKIKGIRNL	0.8123	0.916	0.418	129.7	0.2216	10.21	1/982	1/7748
SNV	Breast	GCAT_E83K_9	HLA-A02:01	YLGLSSHPKV	0.9913	0.7433	0.6989	187.27	0.4961	43.47	1/982	1/7748
SNV	Breast	GFPT1_D36Y_9	HLA-B27:05	QRLEYRGYY	0.9984	0.508	0.0855	6.02	0.1554	144.55	1/982	1/7748
SNV	Breast	GFPT1_D36Y_5	HLA-B27:05	YRGYYSAGVGF	0.9999	0.7807	0.6984	1.95	0.0601	144.55	1/982	1/7748
SNV	Breast	GFPT1_D36Y_9	HLA-C07:02	QRLEYRGYY	0.9464	0.7907	0.4095	384.17	0.3585	144.55	1/982	1/7748
SNV	Breast	GFPT1_D36Y_5	HLA-C07:02	YRGYYSAGVGF	0.995	0.9298	0.972	350.21	0.3449	144.55	1/982	1/7748
SNV	Breast	GPR155_G247E_4	HLA-A02:01	FLDELGNSF	0.9133	0.7446	0.5871	7.11	0.1306	4.3	1/982	1/7748
SNV	Breast	GPR155_G247E_4	HLA-C07:02	FLDELGNSF	0.8886	0.9432	0.1356	280.81	0.3123	4.3	1/982	1/7748
SNV	Breast	GPR155_G247E_4	HLA-C02:02	FLDELGNSF	0.6692	0.9888	0.1623	12.71	0.0261	4.3	1/982	1/7748
SNV	Breast	HDAC4_F870L_8	HLA-B27:05	HRYDDGNLF	0.9979	0.9162	0.0686	1.2	0.0149	5.08	1/982	1/7748
SNV	Breast	HDAC4_F870L_8	HLA-C07:02	HRYDDGNLF	0.9315	0.9389	0.0139	2.7	0.0083	5.08	1/982	1/7748
SNV	Breast	IFT172_I1323M_7	HLA-C02:02	KAAELSMKF	0.7476	0.9644	0.0301	18.23	0.0411	9.71	1/982	1/7748
SNV	Breast	IMPACT_E26Q_6	HLA-A02:01	AIYGEQWCV	0.9932	0.802	0.347	11.27	0.1682	22.32	1/982	1/7748
SNV	Breast	ITGB5_R226T_8	HLA-A02:01	HLLPLTDTV	0.9925	0.8113	0.0669	3.5	0.0748	158.34	1/982	1/7748
SNV	Breast	LONRF1_L301F_8	HLA-A02:01	FLGDALQFF	0.9344	0.7214	0.288	152.26	0.4606	12.85	1/982	1/7748
SNV	Breast	LONRF1_L301F_8	HLA-A02:01	FLGDALQFFL	0.9974	0.6961	0.1482	9.66	0.1559	12.85	1/982	1/7748
SNV	Breast	MED13_E1433V_9	HLA-A02:01	KLSEKLVAV	0.9995	0.6679	0.0211	1.16	0.0105	33.52	1/982	1/7748
SNV	Breast	PKP4_D381H_3	HLA-B07:02	RPHSLTGL	0.9995	0.5393	0.1759	12.71	0.1319	48.19	1/982	1/7748
SNV	Breast	PKP4_D381H_7	HLA-C07:02	MVPPRPHSL	0.9199	0.9662	0.2402	19.29	0.0755	48.19	1/982	1/7748
SNV	Breast	PKP4_D381H_7	HLA-C02:02	MVPPRPHSL	0.9251	0.9883	0.0853	50.61	0.1057	48.19	1/982	1/7748
SNV	Breast	RBBP4_A299S_1	HLA-A02:01	SLWDLRNLKL	0.987	0.5364	0.5616	5.17	0.1067	98.6	1/982	1/7748
SNV	Breast	RBBP4_A299S_8	HLA-C02:02	GSADKTVSL	0.8827	0.9729	0.1664	83.7	0.1427	98.6	1/982	1/7748
SNV	Breast	RPL19_R107K_9	HLA-B27:05	MRILRRLLK	0.9988	0.8954	0.1474	329.33	0.5469	558.75	1/982	1/7748
SNV	Breast	SERPINA5_I72M_7	HLA-C07:02	FFSPVSMSM	0.8396	0.961	0.0791	5.63	0.0251	1.85	1/982	1/7748
SNV	Breast	SERPINA5_I72M_9	HLA-C02:02	SIFFSPVSM	0.6477	0.9809	0.2336	127.08	0.1928	1.85	1/982	1/7748
SNV	Breast	SERPINA5_I72M_7	HLA-C02:02	FFSPVSMSM	0.6437	0.9896	0.683	26.68	0.0598	1.85	1/982	1/7748
SNV	Breast	SERPINA5_I72M_3	HLA-C02:02	VSMSMSLAM	0.7989	0.9518	0.0793	334.97	0.3669	1.85	1/982	1/7748
SNV	Breast	SLC25A20_G261R_5	HLA-B27:05	IRDERVTSL	0.9964	0.8237	0.2616	62.47	0.3571	36.73	1/982	1/7748
SNV	Breast	SLC25A20_G261R_5	HLA-C07:02	IRDERVTSL	0.9908	0.9372	0.012	2.9	0.0089	36.73	1/982	1/7748
SNV	Breast	SLC25A20_G261R_5	HLA-C02:02	IRDERVTSL	0.9359	0.952	1.9591	398.89	0.4064	36.73	1/982	1/7748
SNV	Breast	SYDE1_F669L_4	HLA-B27:05	GRDLLSGPDY	0.9969	0.5921	0.4321	80.54	0.3841	5.32	1/982	1/7748
SNV	Breast	TACC2_A530T_4	HLA-B07:02	QPGTPPPPL	0.9985	0.6666	0.0222	7.56	0.0936	17.97	1/982	1/7748
SNV	Breast	THADA_T1281S_4	HLA-B27:05	NRMSGREFF	0.9994	0.7796	0.1914	7.55	0.1713	8.83	1/982	1/7748
SNV	Breast	THADA_T1281S_4	HLA-C07:02	NRMSGREFF	0.8017	0.9434	0.0791	28.48	0.0951	8.83	1/982	1/7748
SNV	Breast	ZNF808_H505D_4	HLA-B27:05	RRLDSGEKPY	0.9998	0.8769	0.0455	7.89	0.1745	15.49	1/982	1/7748
SNV	Breast	ZNF808_H505D_4	HLA-B27:05	RRLDSGEKPYK	0.9999	0.8987	0.0136	358.58	0.558	15.49	1/982	1/7748
SNV	Breast	AOX1_Q767E_7	HLA-B35:01	VPKGEDEEM	0.9106	0.9409	0.4432	30.24	0.2042	5.32	1/982	1/7748
SNV	Breast	BACE2_L174V_2	HLA-B35:01	FVVNIATIF	0.9798	0.8992	0.0436	195.91	0.3763	9.44	1/982	1/7748
SNV	Breast	BCORL1_M341I_1	HLA-B35:01	IPASTPPAA	0.9133	0.5805	0.2064	105.01	0.3124	12.22	1/982	1/7748
SNV	Breast	ECD_N599K_8	HLA-B35:01	APVDVDLKL	0.9597	0.8123	0.205	16.06	0.1628	43.71	1/982	1/7748
SNV	Breast	FLVCR1_R54W_8	HLA-B35:01	FPVNGAPW	0.987	0.908	0.9147	292.14	0.4213	33.41	1/982	1/7748
SNV	Breast	FOCAD_L265F_9	HLA-B35:01	HPVFWKIQF	0.9975	0.7789	0.0239	3.58	0.0702	19.05	1/982	1/7748
SNV	Breast	HAUS6_L267V_3	HLA-B35:01	YAVDGTNVA	0.897	0.8128	0.5556	139.65	0.3416	14.86	1/982	1/7748
SNV	Breast	HMCN1_S1040L_1	HLA-B35:01	LPGGEESGEY	0.9609	0.9564	0.2647	290.86	0.4207	4.6	1/982	1/7748
SNV	Breast	KANSL3_R290C_5	HLA-B35:01	FPTSCRHRF	0.9948	0.7956	0.0296	6.86	0.1053	37.32	1/982	1/7748
SNV	Breast	LNX1_P375S_1	HLA-C07:04	SRDDSFHVI	0.8466	0.8232	0.0013	199.84	0.0094	11.93	1/982	1/7748
SNV	Breast	NIPA2_T86I_1	HLA-B35:01	IPLGALSVL	0.9891	0.895	0.0894	10.12	0.1294	59.36	1/982	1/7748
SNV	Breast	PHF3_N1822S_8	HLA-B35:01	FPFPGPPSF	0.9996	0.983	0.0016	1.02	0.0012	30.22	1/982	1/7748
SNV	Breast	PHF3_N1822S_8	HLA-B35:01	FPFPGPPSFP	0.9864	0.9722	0.6208	7.53	0.1108	30.22	1/982	1/7748
SNV	Breast	PHF3_N1822S_10	HLA-B35:01	PGFPFPGPPSF	0.995	0.9676	1.759	159.62	0.3553	30.22	1/982	1/7748
SNV	Breast	PI4KA_S895Y_9	HLA-B35:01	FAMSTYLLY	0.9906	0.8952	0.0019	2.64	0.0515	51.23	1/982	1/7748
SNV	Breast	RPAP1_V259D_7	HLA-C04:01	QLDPSLDAF	0.9984	0.7909	0.0651	135.47	0.0818	18	1/982	1/7748
SNV	Breast	SLC7A6OS_R285G_9	HLA-B44:02	EERGSSRQGMW	0.9996	0.6263	0.0914	24.14	0.1629	4.06	1/982	1/7748
SNV	Breast	TSHZ1_S238F_1	HLA-B35:01	FVFTGASKF	0.9912	0.9712	0.0253	10.81	0.1348	10.7	1/982	1/7748
SNV	Breast	CASZ1_R372C_7	HLA-A03:01	KTGKVGCPSK	0.9928	0.5502	0.2679	175.69	0.3462	27.03	1/982	1/7748
SNV	Breast	PMEPA1_E96Q_6	HLA-A02:01	CLWPSQSTV	0.988	0.8157	0.1286	279.87	0.5614	6.82	1/982	1/7748
SNV	Breast	SELP_G660E_5	HLA-C07:02	RHHPETFGF	0.831	0.981	0.07	175.42	0.2545	3.22	1/982	1/7748
SNV	Breast	TEC_M373L_6	HLA-B13:02	SELTFLREL	0.9991	0.5214	0.0204	197.39	0.0767	1.22	1/982	1/7748
SNV	Breast	ZNF419_S496F_5	HLA-C07:02	FRHNFSLF	0.9995	0.9328	0.2181	204.28	0.2724	1.17	1/982	1/7748
SNV	Breast	ZNF419_S496F_7	HLA-C07:02	KFFRHNFSL	0.7768	0.9504	0.2011	17.09	0.071	1.17	1/982	1/7748
SNV	Breast	ZNF419_S496F_6	HLA-C07:02	FFRHNFSLF	0.5945	0.9485	0.2011	154.1	0.2402	1.17	1/982	1/7748
SNV	Breast	ZNF419_S496F_5	HLA-C06:02	FRHNFSLF	0.9837	0.9967	0.4531	292.39	0.1556	1.17	1/982	1/7748
SNV	Breast	ACAD10_A405G_6	HLA-C08:02	SVDLQGVGL	0.9998	0.9842	0.0225	103.95	0.0662	8.99	1/982	1/7748
SNV	Breast	ANKRD28_V222L_9	HLA-C12:03	ASSGMISVL	0.9954	0.9675	0.1394	62.54	0.4097	12.88	1/982	1/7748
SNV	Breast	CUL2_Q497R_5	HLA-C12:03	FIKNRDTVI	0.9754	0.9333	1.5676	217.08	0.764	23.65	1/982	1/7748
SNV	Breast	DEPTOR_N376S_4	HLA-C12:03	VSVSGLNVL	0.985	0.9913	0.0922	41.31	0.3351	41.87	1/982	1/7748
SNV	Breast	EFCAB13_T452S_4	HLA-B18:01	TEKSAISTL	0.8327	0.9164	0.145	73.56	0.1363	1.17	1/982	1/7748
SNV	Breast	EFCAB13_T452S_1	HLA-C12:03	SAISTLENF	0.9701	0.9869	0.0979	41.84	0.3373	1.17	1/982	1/7748
SNV	Breast	EFR3A_S329Y_8	HLA-C12:03	VAIAAKGYI	0.8211	0.9506	0.5679	165.04	0.6665	75.37	1/982	1/7748
SNV	Breast	EFR3A_S329Y_3	HLA-C12:03	KGYIGPTVL	0.979	0.969	0.8094	15.39	0.178	75.37	1/982	1/7748
SNV	Breast	EFR3A_S329Y_1	HLA-C12:03	YIGPTVLEV	0.9964	0.9806	0.323	40.11	0.33	75.37	1/982	1/7748
SNV	Breast	EFR3A_S329Y_1	HLA-C08:02	YIGPTVLEV	0.9707	0.9843	0.3675	348.67	0.1193	75.37	1/982	1/7748
SNV	Breast	GRIK3_A829G_4	HLA-C12:03	IVLGAGLVL	0.963	0.9893	0.3334	16.27	0.1842	6.37	1/982	1/7748
SNV	Breast	IL15_L122F_9	HLA-C12:03	LIILANNSF	0.7783	0.9792	0.7927	486.1	1.0634	1.27	1/982	1/7748
SNV	Breast	LRRC42_L191V_5	HLA-B18:01	DEHEVLEHL	0.9973	0.9295	0.0525	11.18	0.0654	34.09	1/982	1/7748
SNV	Breast	MAP3K9_P959A_2	HLA-C12:03	FARLPDPNV	0.9086	0.9906	0.4894	287.99	0.8643	1.78	1/982	1/7748
SNV	Breast	MYH11_L1116M_9	HLA-C12:03	NALKKIREM	0.984	0.9733	0.1294	65.46	0.4204	1.07	1/982	1/7748
SNV	Breast	NAV2_F1607V_2	HLA-C12:03	RVRNSSMSL	0.9366	0.9768	1.5297	7.31	0.0929	4.06	1/982	1/7748
SNV	Breast	PDCD4_T167P_6	HLA-C12:03	RAFEKPLTPI	0.996	0.9621	0.8011	106.75	0.5396	275.68	1/982	1/7748
SNV	Breast	RMND5B_E281K_4	HLA-C12:03	LSVKSPLSV	0.9391	0.9745	0.1244	190.97	0.7153	25.04	1/982	1/7748
SNV	Breast	SETMAR_R370H_3	HLA-A25:01	TTHNINNAF	0.9332	0.6533	0.009	317.39	0.0546	10.77	1/982	1/7748
SNV	Breast	SETMAR_R370H_7	HLA-C12:03	KAAETTHNI	0.8648	0.9614	0.12	11.66	0.1403	10.77	1/982	1/7748
SNV	Breast	SETMAR_R370H_3	HLA-C12:03	TTHNINNAF	0.6463	0.9807	0.0889	17.31	0.1911	10.77	1/982	1/7748
SNV	Breast	SLC35A5_P381L_9	HLA-C12:03	YNASKPQVL	0.9813	0.912	0.7619	222.08	0.7727	19.7	1/982	1/7748
SNV	Breast	SLC35A5_P381L_7	HLA-C12:03	ASKPQVLEY	0.8744	0.9171	0.1394	18.96	0.2016	19.7	1/982	1/7748
SNV	Breast	TMEM41A_T221S_5	HLA-C12:03	FSWDSVFKL	0.9873	0.9908	0.0201	17.04	0.1893	15.22	1/982	1/7748
SNV	Breast	TRAF3IP3_Q516P_7	HLA-B18:01	EELNQSPQL	0.923	0.8576	0.1705	97.76	0.1501	3.03	1/982	1/7748
SNV	Breast	TRIP12_P1383S_8	HLA-C08:02	STDDESNSL	0.9998	0.923	0.0018	10.92	0.0203	28.45	1/982	1/7748
SNV	Breast	WWC2_R951K_3	HLA-A33:01	DLKSQPPTR	0.987	0.6871	0.4246	120.77	0.0746	3.55	1/982	1/7748
SNV	Breast	ZFAT_L1111F_9	HLA-C12:03	GTQAAVAAF	0.556	0.9883	0.6284	218.25	0.7661	4.96	1/982	1/7748
SNV	Breast	ZFAT_L1111F_6	HLA-C12:03	AAVAAFQDL	0.9548	0.9883	0.1536	231.93	0.7892	4.96	1/982	1/7748
SNV	Breast	ZNF292_D401V_6	HLA-B18:01	IEPTVVAY	0.9895	0.9289	0.2004	8.63	0.0578	6.25	1/982	1/7748
SNV	Breast	ZNF292_D401V_6	HLA-B18:01	IEPTVVAYY	0.9899	0.8979	0.2114	15.8	0.0751	6.25	1/982	1/7748
SNV	Breast	ZNF292_D401V_1	HLA-C12:03	VAYYAVEM	0.9989	0.9826	0.9254	246.31	0.8108	6.25	1/982	1/7748
SNV	Breast	ZNF292_D401V_2	HLA-C12:03	VVAYYAVEM	0.9798	0.9759	1.4168	38.01	0.3206	6.25	1/982	1/7748
SNV	Breast	ZNF292_D401V_1	HLA-C12:03	VAYYAVEML	0.9564	0.9837	0.323	7.28	0.0926	6.25	1/982	1/7748
SNV	Breast	ALG10B_H172Y_4	HLA-C03:03	YGNYKTSAF	0.9972	0.9673	1.2734	306.56	0.4234	6.72	1/982	1/7748
SNV	Breast	ANKLE2_D644A_5	HLA-A02:01	FLDEADMSL	0.9954	0.7555	0.1465	1.05	0.004	17.42	1/982	1/7748
SNV	Breast	ANKLE2_D644A_6	HLA-A02:01	AFLDEADMSL	0.9434	0.7041	1.9293	7.75	0.1378	17.42	1/982	1/7748
SNV	Breast	ANKLE2_D644A_5	HLA-C03:03	FLDEADMSL	0.9909	0.9936	0.2194	8.97	0.0755	17.42	1/982	1/7748
SNV	Breast	AUNIP_S140F_10	HLA-B15:01	GLSPQSLQTF	0.9999	0.8425	0.2825	424.38	0.4905	10.91	1/982	1/7748
SNV	Breast	CDH6_N351S_8	HLA-B15:01	TLKVEASSPY	0.9999	0.8814	0.6189	250.11	0.4007	1.04	1/982	1/7748
SNV	Breast	DHX30_L575P_3	HLA-A02:01	ILPKGLQRL	0.9582	0.6742	0.5524	120.45	0.4206	57.06	1/982	1/7748
SNV	Breast	DLGAP4_D979N_5	HLA-B13:02	TESANSIEI	0.9962	0.6592	0.2039	421.02	0.139	45.4	1/982	1/7748
SNV	Breast	DLGAP4_D979N_7	HLA-C03:03	SATESANSI	0.9923	0.9905	0.1526	43.26	0.1906	45.4	1/982	1/7748
SNV	Breast	DOK5_R265C_7	HLA-B15:01	TMVPLPCSAY	0.9995	0.9718	0.1451	31.1	0.1733	1.54	1/982	1/7748
SNV	Breast	GPR162_V273A_3	HLA-A02:01	NLASAIVFL	0.9721	0.5175	0.1006	2.86	0.0621	2.09	1/982	1/7748
SNV	Breast	KIF2C_R580T_1	HLA-C06:02	TYADRVKEL	0.9036	0.9939	0.118	150.93	0.1165	42.13	1/982	1/7748
SNV	Breast	NUP188_D127A_8	HLA-B15:01	ALILKIAAY	0.9991	0.8161	0.0609	6.18	0.0591	38.71	1/982	1/7748
SNV	Breast	NUP188_D127A_6	HLA-B15:01	ILKIAAYYY	0.9951	0.6942	0.3826	267.36	0.412	38.71	1/982	1/7748
SNV	Breast	PGK1_M190I_3	HLA-B15:01	FLIKKELNY	0.9994	0.9008	0.1599	21.99	0.1481	421.48	1/982	1/7748
SNV	Breast	PGK1_M190I_2	HLA-B15:01	LIKKELNYF	0.996	0.9187	0.1883	44.3	0.2048	421.48	1/982	1/7748
SNV	Breast	PHF14_D618Y_8	HLA-B15:01	KQPALTAY	0.9997	0.8839	1.1119	16.33	0.1262	24.74	1/982	2/7748
SNV	Breast	PHF14_D618Y_9	HLA-B15:01	HKQPALTAY	0.7197	0.8996	0.4906	242.5	0.3965	24.74	1/982	2/7748
SNV	Breast	PHF14_D618Y_8	HLA-B15:01	KQPALTAYF	0.9992	0.8692	0.1311	11.22	0.1037	24.74	1/982	2/7748
SNV	Breast	PHF14_D618Y_5	HLA-B15:01	ALTAYFVNY	0.9876	0.9529	0.2303	339	0.4523	24.74	1/982	2/7748
SNV	Breast	SELP_P301L_6	HLA-C03:03	FALVGLEVV	0.9938	0.9939	0.1366	193.72	0.357	3.24	1/982	1/7748
SNV	Breast	TP53_H193R_7	HLA-A02:01	GLAPPQRLIRV	0.9865	0.7731	1.0335	58.71	0.323	119.6	1/982	8/7748
SNV	Breast	TP53_H193R_1	HLA-A02:01	RLIRVEGNLRV	0.9288	0.7479	1.4338	40.27	0.2807	119.6	1/982	8/7748
SNV	Breast	TTC21A_D61N_8	HLA-C03:03	HIQDAISNL	0.9992	0.9879	0.2412	219.34	0.374	3.36	1/982	1/7748
SNV	Breast	UBA3_D150H_3	HLA-B15:01	IQHFNDTFY	0.9995	0.718	0.0236	6.43	0.061	68.72	1/982	1/7748
SNV	Breast	UBA3_D150H_4	HLA-B15:01	KIQHFNDTFY	0.999	0.8328	0.4806	196.17	0.3688	68.72	1/982	1/7748
SNV	Breast	AGFG2_G329S_3	HLA-C16:01	AASVPSSLF	0.7297	0.9867	0.0399	74.57	0.3652	7.19	1/982	1/7748
SNV	Breast	AMOTL1_R792H_7	HLA-C16:01	SSLRPAHSV	0.9272	0.9864	0.4056	307.62	0.7007	9.98	1/982	1/7748
SNV	Breast	AUTS2_L1227M_10	HLA-C16:01	SAPPPLISTM	0.988	0.9738	0.1253	356.11	0.7422	25.58	1/982	1/7748
SNV	Breast	C3orf67_P363L_9	HLA-C16:01	FSSRPRSAL	0.9743	0.9851	0.0503	10.34	0.1019	1.4	1/982	1/7748
SNV	Breast	C3orf67_P363L_2	HLA-C16:01	ALHGKTQTM	0.8058	0.9667	0.1668	49.2	0.2867	1.4	1/982	1/7748
SNV	Breast	CBLB_D585N_6	HLA-C16:01	SVPSRNPPM	0.7721	0.9873	0.5074	329.27	0.72	11	1/982	1/7748
SNV	Breast	CFH_E847V_5	HLA-C16:01	YLIQVGEEI	0.5437	0.9695	1.2036	428.48	0.7946	17.31	1/982	1/7748
SNV	Breast	DPP3_A694D_3	HLA-C16:01	SADGLIRSF	0.9296	0.9709	0.0339	7.39	0.0741	33.32	1/982	1/7748
SNV	Breast	DPP3_A694D_3	HLA-C08:02	SADGLIRSF	0.9995	0.9407	0.0275	137.7	0.0757	33.32	1/982	1/7748
SNV	Breast	EAF2_P72A_5	HLA-C16:01	GSTPAVTVF	0.8761	0.9792	0.2496	48.08	0.2835	8.88	1/982	1/7748
SNV	Breast	EBF3_D222G_5	HLA-C16:01	TVNVGGHVL	0.8961	0.98	0.4704	20.73	0.1735	2.49	1/982	1/7748
SNV	Breast	ICE1_S1162R_1	HLA-C16:01	RTFSELDRL	0.8888	0.9658	0.7315	301.43	0.6948	28.14	1/982	1/7748
SNV	Breast	KRCC1_D13Y_1	HLA-B44:03	YELEDYIKV	0.9014	0.9598	0.2916	398.94	0.3912	52.96	1/982	1/7748
SNV	Breast	KRCC1_D13Y_8	HLA-C16:01	KTYDSFQYEL	0.9948	0.9655	0.9501	461.6	0.818	52.96	1/982	1/7748
SNV	Breast	LILRA6_G24A_7	HLA-C16:01	RTHVQAAPF	0.7846	0.9822	0.0816	126.03	0.473	2.82	1/982	1/7748
SNV	Breast	LILRA6_G24A_2	HLA-C16:01	AAPFPKPTL	0.9909	0.9868	0.1548	35.48	0.24	2.82	1/982	1/7748
SNV	Breast	MAD2L1_Y77F_9	HLA-B44:03	VEQLKDWLF	0.9907	0.9094	0.1236	85.16	0.2715	22.91	1/982	1/7748
SNV	Breast	MEGF8_V525I_8	HLA-C16:01	AAVLGGSIL	0.7976	0.9925	0.4056	62.48	0.3292	21.63	1/982	1/7748
SNV	Breast	MEGF8_V525I_7	HLA-C16:01	AVLGGSILL	0.9597	0.9914	0.7315	32.8	0.2278	21.63	1/982	1/7748
SNV	Breast	MMP16_S399R_4	HLA-B44:03	YENRDGNFVF	0.9957	0.7442	0.2143	14.59	0.1424	1.23	1/982	1/7748
SNV	Breast	NELL1_V33I_6	HLA-C16:01	LQMDIITEL	0.9948	0.9931	0.7424	13.37	0.1249	1.88	1/982	1/7748
SNV	Breast	NELL1_V33I_6	HLA-C08:02	LQMDIITEL	0.9959	0.9901	0.6198	498.34	0.1412	1.88	1/982	1/7748
SNV	Breast	PDGFD_D222N_8	HLA-B44:03	AEFDTVENL	0.9963	0.9726	0.0897	1.9	0.0356	19.79	1/982	1/7748
SNV	Breast	PDGFD_D222N_8	HLA-B44:03	AEFDTVENLL	0.9912	0.9671	0.1128	13.17	0.1373	19.79	1/982	1/7748
SNV	Breast	PTPRT_R928Q_3	HLA-C16:01	HSQVRLLVL	0.977	0.9679	0.2636	39.05	0.2544	69.3	1/982	1/7748
SNV	Breast	PTPRT_R928Q_7	HLA-C16:01	ISYDHSQVRL	0.9938	0.9127	0.5766	403.5	0.7776	69.3	1/982	1/7748
SNV	Breast	RGS5_S166Y_5	HLA-B44:03	MEKDYLPRF	0.9975	0.9267	0.0409	2.78	0.0557	37.24	1/982	1/7748
SNV	Breast	STAMBP_R35W_8	HLA-B44:03	NEDIPPRW	0.9998	0.9245	0.5556	97.89	0.2819	18.12	1/982	1/7748
SNV	Breast	STAMBP_R35W_8	HLA-B44:03	NEDIPPRWY	0.998	0.9099	0.2009	3.66	0.0729	18.12	1/982	1/7748
SNV	Breast	STAMBP_R35W_7	HLA-B44:03	EDIPPRWYF	0.9381	0.9005	0.1903	25.96	0.1716	18.12	1/982	1/7748
SNV	Breast	STAMBP_R35W_8	HLA-B44:03	NEDIPPRWYF	0.9973	0.8871	0.1675	4.39	0.0812	18.12	1/982	1/7748
SNV	Breast	STAMBP_R35W_11	HLA-B44:03	VEVNEDIPPRW	0.9998	0.94	0.058	11.39	0.1302	18.12	1/982	1/7748
SNV	Breast	TBC1D9_R1191W_8	HLA-B44:03	GEDTVLVW	0.9995	0.995	0.486	47.49	0.2226	122.88	1/982	1/7748
SNV	Breast	TBC1D9_R1191W_1	HLA-C16:01	WSGQGTAAL	0.6077	0.9779	0.5171	152.7	0.5146	122.88	1/982	1/7748
SNV	Breast	TGFBI_L472F_9	HLA-C16:01	RVFVYRNSF	0.7552	0.9705	0.5676	7.61	0.0763	40.63	1/982	1/7748
SNV	Breast	TLN1_V296A_7	HLA-B44:03	SEIEAKARY	0.9997	0.9428	0.0105	1.06	0.0024	129.89	1/982	1/7748
SNV	Breast	TLN1_V296A_7	HLA-B44:03	SEIEAKARYV	0.9743	0.9469	0.2419	17.7	0.152	129.89	1/982	1/7748
SNV	Breast	ZNF644_T71M_8	HLA-C16:01	TSFQKNNML	0.7772	0.9756	0.2306	24.99	0.1912	20.02	1/982	1/7748
SNV	Breast	ZNF644_T71M_6	HLA-C16:01	FQKNNMLTL	0.9036	0.978	0.8221	76.93	0.3716	20.02	1/982	1/7748
SNV	Breast	ATAD5_K1726E_4	HLA-A02:01	AISEALETL	0.9898	0.6827	0.3867	59.66	0.3251	3.79	1/982	1/7748
SNV	Breast	ATAD5_K1726E_4	HLA-C03:04	AISEALETL	0.9988	0.9933	0.0984	252.12	0.3931	3.79	1/982	1/7748
SNV	Breast	ATAD5_K1726E_4	HLA-C02:02	AISEALETL	0.7513	0.9878	0.1898	239.6	0.2955	3.79	1/982	1/7748
SNV	Breast	KIAA1429_V1478A_7	HLA-A02:05	SLLDSVAGL	0.9916	0.6676	0.0251	4.55	0.0369	58.55	1/982	1/7748
SNV	Breast	KIAA1429_V1478A_7	HLA-A02:01	SLLDSVAGL	0.992	0.7255	0.0876	1.37	0.0163	58.55	1/982	1/7748
SNV	Breast	PTPN14_P568S_1	HLA-B07:02	SPYPRPRPA	0.9994	0.5911	0.1006	9.29	0.1075	10.75	1/982	1/7748
SNV	Breast	PTPN14_P568S_1	HLA-B07:02	SPYPRPRPAT	0.9935	0.6431	0.2475	101.92	0.2653	10.75	1/982	1/7748
SNV	Breast	RETSAT_S425T_8	HLA-C03:04	QAMERYVTM	0.9998	0.9925	0.0362	2.72	0.0287	155.43	1/982	1/7748
SNV	Breast	RETSAT_S425T_8	HLA-C02:02	QAMERYVTM	0.9803	0.9755	0.0457	140.01	0.2083	155.43	1/982	1/7748
SNV	Breast	SVEP1_V1985I_7	HLA-C03:04	FTFRNTITY	0.9217	0.9866	0.4831	334.98	0.4378	2.33	1/982	1/7748
SNV	Breast	AREL1_N444K_8	HLA-B35:01	ETFQDKVKF	0.9388	0.7134	0.7439	233.32	0.3942	29.31	1/982	1/7748
SNV	Breast	AREL1_N444K_7	HLA-C04:01	TFQDKVKFF	0.6978	0.7005	0.1063	487.6	0.1531	29.31	1/982	1/7748
SNV	Breast	HAUS7_S95T_7	HLA-A02:01	SLQDRFTSL	0.9724	0.7313	0.163	7.82	0.1385	1.81	1/982	1/7748
SNV	Breast	HIST1H2BC_G54A_8	HLA-B13:02	KQVHPDTAI	0.6371	0.5031	0.1239	364.03	0.1247	7.15	1/982	1/7748
SNV	Breast	PFDN6_N54D_6	HLA-C04:01	LLDGSDVVF	0.999	0.6254	0.0696	295.58	0.1194	32.59	1/982	1/7748
SNV	Breast	SNRNP35_D118E_5	HLA-A02:01	GLVIEQHEI	0.9183	0.5046	0.8325	265.86	0.5531	19.39	1/982	1/7748
SNV	Breast	SNRNP35_D118E_4	HLA-B35:01	LVIEQHEIF	0.9821	0.9036	0.2647	331.44	0.4372	19.39	1/982	1/7748
SNV	Breast	ATP8B4_D270H_6	HLA-C07:02	KRTSIHRLM	0.9706	0.866	0.106	65.04	0.1559	1.44	1/982	1/7748
SNV	Breast	ATP8B4_D270H_1	HLA-C07:02	HRLMNTLVL	0.9793	0.903	0.0676	7.77	0.0367	1.44	1/982	1/7748
SNV	Breast	BRWD3_S327N_4	HLA-B58:01	SSFNSGGMF	0.9321	0.9119	0.193	373.51	0.5978	10.03	1/982	1/7748
SNV	Breast	CD163L1_A308T_1	HLA-A02:01	TLHFAGLPHL	0.9493	0.6884	0.6655	12.74	0.1783	4.18	1/982	1/7748
SNV	Breast	CRTAC1_R108W_3	HLA-A02:01	ALWDRQGNA	0.9631	0.8336	0.6625	450.27	0.6523	1.48	1/982	1/7748
SNV	Breast	CRTAC1_R108W_3	HLA-A02:01	ALWDRQGNAI	0.9789	0.7617	1.0429	109.52	0.4043	1.48	1/982	1/7748
SNV	Breast	CRTAC1_R108W_9	HLA-B58:01	RSSPYYALW	0.9993	0.9426	0.0019	1.06	0.0026	1.48	1/982	1/7748
SNV	Breast	CRTAC1_R108W_10	HLA-B58:01	ERSSPYYALW	0.9689	0.84	1.814	83.59	0.3692	1.48	1/982	1/7748
SNV	Breast	CYP4B1_Y231S_5	HLA-B58:01	VSFQSHNDF	0.9792	0.8039	0.1745	59.54	0.3247	1.69	1/982	1/7748
SNV	Breast	CYP4B1_Y231S_2	HLA-B58:01	QSHNDFIYW	0.9985	0.8706	0.0154	1.63	0.0221	1.69	1/982	1/7748
SNV	Breast	CYP4B1_Y231S_3	HLA-B58:01	FQSHNDFIYW	0.9592	0.896	0.1843	126.31	0.4256	1.69	1/982	1/7748
SNV	Breast	CYP4B1_Y231S_1	HLA-C07:02	SHNDFIYWL	0.6194	0.9489	0.6066	117.81	0.2112	1.69	1/982	1/7748
SNV	Breast	DENND1B_D713E_8	HLA-A02:01	TLSQISDEL	0.9384	0.6583	0.5055	212.98	0.5171	16.97	1/982	1/7748
SNV	Breast	FN1_T365S_2	HLA-B58:01	FSYNGRTFY	0.9822	0.5027	0.1731	48.01	0.2965	707.26	1/982	1/7748
SNV	Breast	GDPD1_G96A_4	HLA-B58:01	RATAVNVNI	0.9943	0.987	0.3604	22.83	0.2162	4.43	1/982	1/7748
SNV	Breast	IDS_L381R_2	HLA-C07:02	YRDPFDSASQL	0.9998	0.9359	0.3186	498.6	0.397	20.66	1/982	1/7748
SNV	Breast	SIK3_G827V_11	HLA-A02:01	MLSNMPGTAAV	0.9784	0.5306	0.861	75.53	0.3554	6.45	1/982	1/7748
SNV	Breast	SYMPK_A632D_3	HLA-A02:01	YLDAGASGSL	0.9774	0.718	0.6693	120.43	0.4205	20.71	1/982	1/7748
SNV	Breast	TMTC1_R515H_5	HLA-A02:01	KLYPHHASA	0.9869	0.6674	0.1151	19.49	0.2152	7.05	1/982	1/7748
SNV	Breast	TNS1_M550V_5	HLA-B58:01	KSYPVEPMV	0.952	0.9482	0.1918	28.98	0.2377	32.22	1/982	1/7748
SNV	Breast	UBR4_K4703M_2	HLA-B58:01	AMNLDADIW	0.9257	0.9862	0.3673	152.97	0.453	17.93	1/982	1/7748
SNV	Breast	UBR4_K4703M_3	HLA-B58:01	SAMNLDADIW	0.9984	0.8649	0.1864	15.16	0.1741	17.93	1/982	1/7748
SNV	Breast	UBR4_K4703M_7	HLA-C07:02	KHIPSAMNL	0.8147	0.9398	0.2234	66.99	0.1583	17.93	1/982	1/7748
SNV	Breast	DMD_R3000H_7	HLA-C07:02	HVNDLAHQL	0.9521	0.9806	1.073	311.8	0.3277	1.6	1/982	1/7748
SNV	Breast	DMD_R3000H_7	HLA-C03:04	HVNDLAHQL	0.9996	0.9941	0.0592	10.99	0.0889	1.6	1/982	1/7748
SNV	Breast	EP400_V1986L_4	HLA-C07:02	YRLLSGNSI	0.8454	0.892	0.3259	18.83	0.0746	20.54	1/982	1/7748
SNV	Breast	EPAS1_V850M_4	HLA-B07:02	NVPMLGSSTL	0.9135	0.5137	1.8324	16.22	0.1443	139.7	1/982	1/7748
SNV	Breast	EPAS1_V850M_3	HLA-C03:04	VPMLGSSTL	0.9957	0.9882	1.4805	67.64	0.2336	139.7	1/982	1/7748
SNV	Breast	LILRB2_L109I_1	HLA-C03:04	ISDPLVLVM	0.9988	0.9725	0.0424	34.7	0.1746	8.36	1/982	1/7748
SNV	Breast	MBNL1_P116L_7	HLA-B07:02	APLQPVLM	0.9909	0.5918	0.5114	228.34	0.3329	34.75	1/982	1/7748
SNV	Breast	MBNL1_P116L_7	HLA-B07:02	APLQPVLMF	0.9871	0.5498	0.1218	7.01	0.0899	34.75	1/982	1/7748
SNV	Breast	MBNL1_P116L_1	HLA-C03:04	LMFSVAPSL	0.9907	0.9837	0.2527	60.76	0.2223	34.75	1/982	1/7748
SNV	Breast	RAB35_A139D_5	HLA-A24:02	AYKFDGQMGI	0.9817	0.708	1.5878	179.74	0.5345	100.49	1/982	1/7748
SNV	Breast	RAB35_A139D_3	HLA-A24:02	KFDGQMGIQLF	0.9985	0.873	0.4053	120.03	0.4783	100.49	1/982	1/7748
SNV	Breast	RAB35_A139D_4	HLA-C07:02	YKFDGQMGI	0.8147	0.9429	0.972	130.07	0.2219	100.49	1/982	1/7748
SNV	Breast	SCFD1_L398R_2	HLA-C07:02	RRIDLHTNV	0.9533	0.9403	0.172	19.17	0.0753	27.99	1/982	1/7748
SNV	Breast	STAT4_S409P_5	HLA-A03:01	KEMKPSAGGK	0.7842	0.6026	1.2457	267.59	0.4011	4.09	1/982	1/7748
SNV	Breast	ZBTB5_M259I_4	HLA-C03:04	SAIIFDQSF	0.9941	0.9921	0.4309	158.35	0.3293	17.7	1/982	1/7748
SNV	Breast	ABCA3_R1393L_5	HLA-C04:01	VYEQLVPLL	0.9938	0.8461	0.0506	11.31	0.0236	50.84	1/982	1/7748
SNV	Breast	ACADSB_K230N_4	HLA-B57:01	IGYNGITSF	0.963	0.937	1.1652	315.98	0.4292	65.74	1/982	1/7748
SNV	Breast	ACOT11_T519M_9	HLA-B57:01	VTLPTHREM	0.9956	0.9912	0.2823	28.14	0.1876	2.02	1/982	1/7748
SNV	Breast	ACSL5_A640S_8	HLA-B57:01	KTFEQVKSI	0.9979	0.9259	0.3535	8.95	0.1006	10.94	1/982	1/7748
SNV	Breast	ACSL5_A640S_8	HLA-B57:01	KTFEQVKSIF	0.9998	0.8827	0.1695	7.54	0.0899	10.94	1/982	1/7748
SNV	Breast	ACSL5_A640S_7	HLA-C04:01	TFEQVKSIF	0.9565	0.6436	0.1324	113.04	0.0769	10.94	1/982	1/7748
SNV	Breast	ACSL5_P143S_8	HLA-B57:01	GIFAQNRSEW	0.9984	0.9942	0.8375	423.07	0.4677	10.94	1/982	1/7748
SNV	Breast	ADAMTS17_P548L_8	HLA-B57:01	HVDGDWSLW	0.9828	0.9952	0.3174	48.55	0.2297	1.03	1/982	1/7748
SNV	Breast	ADAMTS2_A162T_7	HLA-A24:02	LYVGDVTGL	0.9798	0.5553	0.1528	66.29	0.3963	18.93	1/982	1/7748
SNV	Breast	ADNP_D873G_4	HLA-B44:03	KEDGSSSDSF	0.9446	0.8288	0.1289	406.45	0.3927	64.71	1/982	1/7748
SNV	Breast	AFF1_P341S_1	HLA-B57:01	SSQSVEQTY	0.8412	0.9239	0.3535	37.2	0.2091	29.85	1/982	1/7748
SNV	Breast	AK9_H1577Y_6	HLA-A24:02	YYQEQYQNW	0.9981	0.7533	0.0411	1.16	0.009	2.69	1/982	1/7748
SNV	Breast	AK9_H1577Y_7	HLA-A24:02	QYYQEQYQNW	0.9972	0.8387	0.1956	10.55	0.2207	2.69	1/982	1/7748
SNV	Breast	AP1B1_K817E_2	HLA-B44:03	VENNIDVFY	0.9902	0.822	0.0511	2.34	0.0463	75.75	1/982	1/7748
SNV	Breast	AP1B1_K817E_2	HLA-B44:03	VENNIDVFYF	0.9924	0.8533	0.1074	33.12	0.19	75.75	1/982	1/7748
SNV	Breast	APLNR_T81M_5	HLA-A24:02	TFVVMLPLW	0.987	0.6991	0.2755	27.36	0.3016	5.16	1/982	1/7748
SNV	Breast	ARHGEF10_C155Y_1	HLA-C06:02	YGYAVPSNL	0.9598	0.9951	0.312	299.68	0.1578	8.52	1/982	1/7748
SNV	Breast	ATL2_G311E_4	HLA-C04:01	SFDERLKDI	0.9978	0.6533	0.0071	213.99	0.1043	23.94	1/982	1/7748
SNV	Breast	ATP6V1E2_I158V_9	HLA-B57:01	KAIPEYMTV	0.9021	0.9904	0.3403	36.04	0.2067	2.38	1/982	1/7748
SNV	Breast	ATR_A2134S_8	HLA-B44:03	TEHTNYLSPY	0.9963	0.9364	0.3738	98.66	0.2825	7.36	1/982	1/7748
SNV	Breast	BAIAP2L1_C201R_1	HLA-B57:01	RGFANHIHY	0.9876	0.9564	0.8911	77.5	0.2645	39.78	1/982	1/7748
SNV	Breast	CAPN7_A109V_4	HLA-B44:03	VEDVIELY	0.9964	0.9245	0.5164	377.47	0.3869	27.3	1/982	1/7748
SNV	Breast	CAPN7_A109V_7	HLA-B44:03	KENVEDVIELY	0.9994	0.8709	0.0851	7.4	0.1066	27.3	1/982	1/7748
SNV	Breast	CAPN9_A244T_5	HLA-B44:03	AESETRTPF	0.9988	0.9378	0.0694	3.27	0.0663	3.91	1/982	1/7748
SNV	Breast	CAPN9_A244T_3	HLA-B44:03	SETRTPFGL	0.975	0.9155	0.3544	267.93	0.3599	3.91	1/982	1/7748
SNV	Breast	CAPN9_A345T_4	HLA-B44:03	EEDTIHKW	0.9998	0.8265	0.2009	9.39	0.1201	3.91	1/982	1/7748
SNV	Breast	CAPN9_A345T_5	HLA-B44:03	LEEDTIHKW	0.9994	0.7969	0.0055	1.24	0.0084	3.91	1/982	1/7748
SNV	Breast	CAPN9_A345T_6	HLA-B44:03	ALEEDTIHKW	0.9282	0.8561	1.6114	1.16	0.0058	3.91	1/982	1/7748
SNV	Breast	CAPN9_A345T_7	HLA-B44:03	DALEEDTIHKW	0.9994	0.8762	1.586	109.19	0.29	3.91	1/982	1/7748
SNV	Breast	CCAR1_R357H_4	HLA-B57:01	RVRHVVPRY	0.9903	0.9627	0.9014	10.58	0.111	42.42	1/982	1/7748
SNV	Breast	CCNT1_T676I_2	HLA-A24:02	PIQPTAFEF	0.976	0.5221	0.808	405.62	0.6604	40.04	1/982	1/7748
SNV	Breast	CD2_A69T_9	HLA-B57:01	KTSDKKKITQF	0.9999	0.8705	0.1056	385.88	0.4556	41.26	1/982	1/7748
SNV	Breast	CENPC_R499H_8	HLA-B44:03	KEESKKKHF	0.8815	0.9529	0.2355	236.62	0.3502	6.39	1/982	1/7748
SNV	Breast	CEP104_T447M_7	HLA-B44:03	AEAYCKMWSY	0.9991	0.9345	0.1021	104.75	0.2869	16.11	1/982	1/7748
SNV	Breast	CHD7_Y75H_1	HLA-B44:03	HEQQKMHLM	0.9942	0.9163	0.2205	41.61	0.2103	3.32	1/982	1/7748
SNV	Breast	CLIC4_T86M_9	HLA-B57:01	ITFNSEVKM	0.9937	0.8791	0.6649	325.85	0.4333	99.93	1/982	1/7748
SNV	Breast	COL28A1_G810E_5	HLA-B44:03	SESVEPENF	0.9954	0.9616	0.0655	5.57	0.0927	1.3	1/982	1/7748
SNV	Breast	COQ6_S224N_8	HLA-B57:01	AVGIQNVNW	0.9765	0.9938	0.1056	7.65	0.0909	13.48	1/982	1/7748
SNV	Breast	COQ6_S224N_9	HLA-B57:01	QAVGIQNVNW	0.9997	0.9949	0.1139	7.04	0.0842	13.48	1/982	1/7748
SNV	Breast	CTPS1_E57D_5	HLA-B44:03	YEHGDVFVL	0.809	0.8341	0.1742	228.28	0.3474	9.25	1/982	1/7748
SNV	Breast	CTSL_A251T_4	HLA-C04:01	AIDTGHESF	0.9996	0.771	0.0471	471.02	0.1503	281.08	1/982	1/7748
SNV	Breast	DCBLD2_R430G_3	HLA-B57:01	FIGVNPTQW	0.8483	0.9815	0.2171	415.83	0.4654	1.1	1/982	1/7748
SNV	Breast	DCBLD2_R430G_4	HLA-B57:01	RFIGVNPTQW	0.9971	0.9841	0.3174	143.09	0.3169	1.1	1/982	1/7748
SNV	Breast	DENND3_H939Y_9	HLA-B57:01	ASSWTIHQY	0.995	0.9335	0.3247	38.46	0.2117	4.91	1/982	1/7748
SNV	Breast	DEPTOR_E162A_7	HLA-B44:03	EEGVKYARTF	0.9946	0.7646	0.218	4.64	0.084	39.17	1/982	1/7748
SNV	Breast	DEPTOR_E162A_8	HLA-B44:03	EEEGVKYARTF	0.9998	0.7872	0.1675	60.69	0.2454	39.17	1/982	1/7748
SNV	Breast	DHX9_V725F_10	HLA-B44:03	AETSITINDF	0.9967	0.8872	0.058	5.47	0.0919	120.92	1/982	1/7748
SNV	Breast	DNAI1_R288Q_2	HLA-B44:03	EQMVNQNTY	0.7365	0.9331	0.4402	437.29	0.3984	1.03	1/982	1/7748
SNV	Breast	DNAI1_R288Q_3	HLA-B44:03	MEQMVNQNTY	0.9988	0.9508	0.0391	4.51	0.0826	1.03	1/982	1/7748
SNV	Breast	DNAJC13_V1102F_4	HLA-B44:03	VEKFAILLY	0.9909	0.9104	0.0724	5.71	0.0938	22.91	1/982	1/7748
SNV	Breast	DNAJC13_V1102F_10	HLA-C04:01	TFDPILVEKF	0.9998	0.6794	0.0673	11.09	0.0233	22.91	1/982	1/7748
SNV	Breast	DNM2_R386Q_1	HLA-B44:03	QEISYAIKNI	0.989	0.8948	0.3121	225.08	0.3463	57.34	1/982	1/7748
SNV	Breast	DNMBP_L1280I_7	HLA-B44:03	EELRASILARY	0.9997	0.9326	0.2446	79.43	0.2663	115.25	1/982	1/7748
SNV	Breast	DST_G3232W_9	HLA-B57:01	QAREEQVEW	0.9992	0.9907	0.0825	1.88	0.0226	7.25	1/982	1/7748
SNV	Breast	DST_G3232W_10	HLA-B57:01	AQAREEQVEW	0.9896	0.9896	0.7535	7.39	0.0882	7.25	1/982	1/7748
SNV	Breast	DST_G3232W_11	HLA-B57:01	RAQAREEQVEW	0.9999	0.966	0.0981	14.82	0.1327	7.25	1/982	1/7748
SNV	Breast	DST_G3232W_7	HLA-B44:03	REEQVEWTI	0.9266	0.962	0.3081	421.85	0.3956	7.25	1/982	1/7748
SNV	Breast	DTYMK_L71P_3	HLA-B57:01	HLPFSANRW	0.9854	0.9973	1.4543	412.34	0.4643	38.09	1/982	1/7748
SNV	Breast	E2F6_G252W_10	HLA-B57:01	TSNKRSEGVW	0.9991	0.966	0.4233	91.07	0.276	9.24	1/982	1/7748
SNV	Breast	EHMT1_S1031I_1	HLA-B44:03	IEPCPSNYKY	0.9811	0.9238	0.4128	306.61	0.3705	15.69	1/982	1/7748
SNV	Breast	EML4_D593G_8	HLA-B44:03	IEVQGHTGELW	0.9999	0.9452	0.0511	35.18	0.1951	20.33	1/982	1/7748
SNV	Breast	EPB41L3_R432C_3	HLA-B44:03	FECSSSKRY	0.964	0.8643	0.0529	28.75	0.178	4.4	1/982	1/7748
SNV	Breast	EPHX1_V358I_9	HLA-C04:01	SLDDLLTNI	0.9996	0.7899	0.0439	314.38	0.1223	350.63	1/982	1/7748
SNV	Breast	EPRS_A289V_10	HLA-B44:03	AEKLIQEGKVY	0.9999	0.9635	0.143	2.31	0.0455	262.37	1/982	1/7748
SNV	Breast	EPS8_F328L_3	HLA-B44:03	DELLDCFQKF	0.9982	0.8299	0.1455	478.34	0.4078	7.88	1/982	1/7748
SNV	Breast	FAM189B_A72T_3	HLA-A24:02	SWTGFSLAF	0.9954	0.6099	0.0375	4.02	0.123	62.51	1/982	1/7748
SNV	Breast	FAM189B_A72T_7	HLA-B57:01	RSCPSWTGF	0.9958	0.993	0.0825	125.08	0.2987	62.51	1/982	1/7748
SNV	Breast	FAT1_V135A_4	HLA-B57:01	RTKARVQVL	0.9349	0.9621	1.3601	88.42	0.2739	4.69	1/982	1/7748
SNV	Breast	FBL_A275T_5	HLA-B57:01	STASTEAVF	0.8858	0.9839	0.4079	93.21	0.2777	236.67	1/982	1/7748
SNV	Breast	FBN1_G2337W_9	HLA-B44:03	DECLDNREW	0.9983	0.9661	0.2241	11.87	0.1322	20.67	1/982	1/7748
SNV	Breast	FBN1_G2337W_10	HLA-B44:03	QDECLDNREW	0.9909	0.9876	0.5799	83.49	0.27	20.67	1/982	1/7748
SNV	Breast	FBXO31_F274S_8	HLA-B44:03	QELILMKSI	0.9958	0.9312	0.1655	128.91	0.3025	12.48	1/982	1/7748
SNV	Breast	FBXO31_F274S_8	HLA-B44:03	QELILMKSIY	0.9992	0.8957	0.1409	49.11	0.2257	12.48	1/982	1/7748
SNV	Breast	FMO1_Y229H_7	HLA-B57:01	RIFDSGHPW	0.9987	0.9856	0.0041	1.59	0.0156	1.08	1/982	1/7748
SNV	Breast	FMO1_Y229H_9	HLA-B57:01	ISRIFDSGHPW	1	0.9867	0.1172	87.48	0.2732	1.08	1/982	1/7748
SNV	Breast	FMO1_Y229H_6	HLA-C04:01	IFDSGHPWDM	0.9996	0.8926	0.0366	159.17	0.0877	1.08	1/982	1/7748
SNV	Breast	GBA2_R451Q_6	HLA-A24:02	HYALCQYAEW	0.9922	0.6654	0.4435	375.6	0.6468	46.52	1/982	1/7748
SNV	Breast	GFM2_R698I_7	HLA-B44:03	LEVTVAIDY	0.9893	0.9016	0.0769	12.35	0.1342	39.61	1/982	1/7748
SNV	Breast	GFOD1_Y302H_8	HLA-A01:01	FSDIPSPHL	0.9672	0.5201	0.3033	33	0.2884	2.79	1/982	1/7748
SNV	Breast	GFOD1_Y302H_8	HLA-A01:01	FSDIPSPHLR	0.9922	0.5513	0.2374	136.56	0.4344	2.79	1/982	1/7748
SNV	Breast	GFOD1_Y302H_8	HLA-C04:01	FSDIPSPHL	1	0.8553	0.0177	277.97	0.1165	2.79	1/982	1/7748
SNV	Breast	GFOD1_Y302H_9	HLA-C04:01	AFSDIPSPHL	0.9996	0.8958	0.2465	189.49	0.0978	2.79	1/982	1/7748
SNV	Breast	GLA_D244V_8	HLA-B57:01	KSIKSILVW	0.9999	0.9535	0.0015	1.13	0.0033	46.6	1/982	1/7748
SNV	Breast	GLA_D244V_5	HLA-B57:01	KSILVWTSF	0.9983	0.9895	0.0379	21.8	0.165	46.6	1/982	1/7748
SNV	Breast	GLA_D244V_9	HLA-B57:01	WKSIKSILVW	0.9966	0.9781	1.9577	57.51	0.2427	46.6	1/982	1/7748
SNV	Breast	GNA11_R114W_8	HLA-B57:01	KANALLIW	0.9998	0.9567	0.4671	36.85	0.2084	53.59	1/982	1/7748
SNV	Breast	GOLGA3_A1335V_6	HLA-B44:03	SELEMVQEDL	0.9836	0.9726	0.2241	336.68	0.3779	43.13	1/982	1/7748
SNV	Breast	GOLGA3_A566V_1	HLA-B44:03	VEISSLQSV	0.8967	0.8964	0.2069	152.52	0.3157	43.13	1/982	1/7748
SNV	Breast	GPR84_A356V_5	HLA-A24:02	HMLAVNLTW	0.9777	0.7328	0.4895	497.59	0.6963	3.4	1/982	1/7748
SNV	Breast	GPR84_A356V_5	HLA-B57:01	HMLAVNLTW	0.9919	0.9929	0.0173	6.98	0.0835	3.4	1/982	1/7748
SNV	Breast	HELLS_R224Q_8	HLA-A24:02	HFTGGVMQW	0.9909	0.8194	0.293	10.67	0.2217	2.16	1/982	1/7748
SNV	Breast	HELLS_R224Q_9	HLA-A24:02	KHFTGGVMQW	0.9357	0.7835	0.7255	366.43	0.6425	2.16	1/982	1/7748
SNV	Breast	HELLS_R224Q_1	HLA-A24:02	QWYQVEGMEW	0.9608	0.5936	0.2695	46.18	0.3576	2.16	1/982	1/7748
SNV	Breast	HELLS_R224Q_7	HLA-B57:01	FTGGVMQW	0.9985	0.9852	0.3734	258.9	0.403	2.16	1/982	1/7748
SNV	Breast	HIP1_R577W_10	HLA-B44:03	AEFAELEKEW	0.9999	0.983	0.0019	1.16	0.0059	26.96	1/982	1/7748
SNV	Breast	HOXC10_E252K_1	HLA-B57:01	KIKAENTTGNW	0.9999	0.9761	0.1695	102.28	0.2843	295.2	1/982	1/7748
SNV	Breast	IGHMBP2_D727N_8	HLA-B44:03	VESQDGVNHF	0.9977	0.6249	0.058	7.73	0.1091	7.15	1/982	1/7748
SNV	Breast	IL4R_S254N_1	HLA-B57:01	NITKIKKEW	0.8968	0.9428	0.2453	221.15	0.3803	58.21	1/982	1/7748
SNV	Breast	INPPL1_C405Y_3	HLA-A24:02	AFYQLLQLM	0.9275	0.6688	0.7534	493.5	0.6949	69.4	1/982	1/7748
SNV	Breast	INTS5_C362Y_2	HLA-A24:02	DYLKPPAVL	0.9782	0.5284	0.3949	9.2	0.2094	57.1	1/982	1/7748
SNV	Breast	ITPR3_E2562A_5	HLA-B57:01	HIKLAHNMW	0.9949	0.9817	0.387	13.16	0.1245	58.41	1/982	1/7748
SNV	Breast	ITPR3_E2562A_7	HLA-B44:03	EEHIKLAHNM	0.9908	0.8817	0.4436	170.94	0.3246	58.41	1/982	1/7748
SNV	Breast	JAK1_C1131Y_10	HLA-B44:03	DEVYQLMRKY	0.9986	0.9059	0.3393	7.7	0.1089	175.62	1/982	1/7748
SNV	Breast	KIF26B_H312R_3	HLA-B57:01	QARQYLDGTW	0.9991	0.9804	0.2121	157.38	0.3307	14.27	1/982	1/7748
SNV	Breast	LIN54_T344A_2	HLA-B57:01	AAAPNVQQI	0.9574	0.9717	1.0813	465.1	0.4802	11.63	1/982	1/7748
SNV	Breast	LY6G6C_C25Y_10	HLA-B57:01	VSADIRCHSY	0.9992	0.9343	0.387	172.9	0.3445	1.41	1/982	1/7748
SNV	Breast	MBTD1_E320G_1	HLA-B44:03	GESEDRTDDFW	0.9999	0.7949	0.131	92.69	0.2778	8.01	1/982	1/7748
SNV	Breast	MCM10_A75V_5	HLA-B44:03	KENLVTLF	0.9993	0.9681	0.2419	210.27	0.3409	2.91	1/982	1/7748
SNV	Breast	MCM10_A75V_7	HLA-B44:03	DEKENLVTLF	0.9937	0.948	0.2069	311.74	0.3718	2.91	1/982	1/7748
SNV	Breast	MED13L_T28M_5	HLA-B57:01	LAELMGIKW	0.9988	0.9761	0.0566	116.76	0.2937	10.95	1/982	1/7748
SNV	Breast	MED13L_T28M_4	HLA-B44:03	AELMGIKW	0.9999	0.9818	0.1198	3.17	0.0641	10.95	1/982	1/7748
SNV	Breast	MED13L_T28M_4	HLA-B44:03	AELMGIKWRRY	0.9997	0.9701	0.5974	4.13	0.0783	10.95	1/982	1/7748
SNV	Breast	MKNK1_M47V_1	HLA-A24:02	VYKLTSELL	0.9793	0.515	0.1133	2.52	0.083	16.28	1/982	1/7748
SNV	Breast	MON1B_R518Q_4	HLA-B44:03	EEDQLFIRY	0.9996	0.8314	0.0769	1.62	0.0277	22.85	1/982	1/7748
SNV	Breast	MON1B_R518Q_5	HLA-B44:03	KEEDQLFIRY	0.9996	0.8889	0.0541	8.12	0.1119	22.85	1/982	1/7748
SNV	Breast	MPP7_M126I_9	HLA-C04:01	NYDPVLPPI	0.9582	0.5476	0.0096	35.78	0.0489	2.92	1/982	1/7748
SNV	Breast	MRPS18C_A114T_6	HLA-B57:01	KAIKRTQIM	0.9898	0.8762	0.9014	62.29	0.2489	7.38	1/982	1/7748
SNV	Breast	NDUFB6_V75A_4	HLA-B57:01	FTHALVPVW	0.9993	0.9873	0.0095	6.83	0.0816	107.76	1/982	1/7748
SNV	Breast	NDUFB6_V75A_5	HLA-B57:01	VFTHALVPVW	0.9967	0.9929	0.9541	256.71	0.4019	107.76	1/982	1/7748
SNV	Breast	NEXN_S357P_6	HLA-C04:01	VVDDDPPEM	0.9999	0.6631	0.0217	401.44	0.1386	1.88	1/982	1/7748
SNV	Breast	NME1_R18W_9	HLA-B57:01	AIKPDGVQW	0.995	0.9812	0.0711	2.5	0.0302	36.06	1/982	1/7748
SNV	Breast	NME1_R18W_10	HLA-B57:01	IAIKPDGVQW	0.9999	0.9466	0.0462	1.53	0.0135	36.06	1/982	1/7748
SNV	Breast	OBSCN_V5962A_1	HLA-B44:03	AEGDDRAFEVW	0.9999	0.9282	0.0452	12.56	0.135	14.69	1/982	1/7748
SNV	Breast	PADI2_N650S_1	HLA-B57:01	SVRRKPFTF	0.9642	0.9517	0.9089	74.27	0.2615	6.05	1/982	1/7748
SNV	Breast	PAPOLA_F367I_8	HLA-B57:01	KLFEAPNIF	0.7663	0.9813	0.8744	448.72	0.4754	52.25	1/982	1/7748
SNV	Breast	PAPOLA_F367I_6	HLA-B44:03	FEAPNIFQKY	0.9993	0.92	0.0174	2.91	0.0582	52.25	1/982	1/7748
SNV	Breast	PCDHGB6_R526H_5	HLA-B44:03	HEQLHAFAL	0.9708	0.9226	0.1675	412.33	0.3938	1.46	1/982	1/7748
SNV	Breast	PCDHGB6_R526H_8	HLA-C04:01	AFDHEQLHAF	0.9999	0.8876	0.0217	34.6	0.0481	1.46	1/982	1/7748
SNV	Breast	PDCD10_Q163K_6	HLA-B57:01	RALEHKKKEF	0.9829	0.9952	0.5305	483.26	0.4852	26.9	1/982	1/7748
SNV	Breast	PIFO_A92T_7	HLA-B44:03	KEMTPHTGRY	0.9994	0.8043	0.0694	2.61	0.0523	4.18	1/982	1/7748
SNV	Breast	PLCD4_V657A_2	HLA-B57:01	KAQIFGVRL	0.9459	0.983	1.2203	249.37	0.3979	2.43	1/982	1/7748
SNV	Breast	PLEC_T3654M_6	HLA-C04:01	FFDPNMHENL	0.9999	0.6554	0.0091	2.78	0.0074	87.07	1/982	1/7748
SNV	Breast	PLXNA3_K1318R_1	HLA-B44:03	RELDTPPNV	0.8683	0.9553	0.3695	243.01	0.3523	22.42	1/982	1/7748
SNV	Breast	PRDM2_Y1466H_5	HLA-B44:03	REFTHIGSL	0.9387	0.9091	0.2265	164.47	0.3216	29.66	1/982	1/7748
SNV	Breast	PRPF18_G46D_9	HLA-B44:03	EEAYFERCDY	0.9981	0.8559	0.3661	496.82	0.412	27.25	1/982	1/7748
SNV	Breast	PSD4_T796M_2	HLA-B57:01	KMPWGKRGW	0.9583	0.976	0.782	217.15	0.3777	19.13	1/982	1/7748
SNV	Breast	PTPN13_R558Q_7	HLA-B57:01	ISLDLPQSI	0.9902	0.8952	0.5986	433.84	0.471	33.2	1/982	1/7748
SNV	Breast	PTPRC_C265Y_11	HLA-B44:03	NENVECGNNTY	0.9981	0.9065	0.1331	134.85	0.306	27.12	1/982	1/7748
SNV	Breast	PTPRC_P767S_1	HLA-B57:01	SSMEEGTRAF	0.9988	0.9729	0.2955	371.8	0.4507	27.12	1/982	1/7748
SNV	Breast	R3HCC1L_Y483H_6	HLA-B57:01	IAGSNHNTF	0.9597	0.9672	0.5534	319.4	0.4307	13.86	1/982	1/7748
SNV	Breast	RANBP2_L2653P_4	HLA-B57:01	KLKPPPTFF	0.9612	0.9637	0.6141	154.96	0.3285	33.48	1/982	1/7748
SNV	Breast	RANBP2_L2653P_6	HLA-B57:01	ATKLKPPPTF	0.9998	0.9888	0.5596	31.71	0.1968	33.48	1/982	1/7748
SNV	Breast	RASAL3_A674V_6	HLA-B44:03	EEHGPVMQCF	0.9987	0.7504	0.0749	3.2	0.0648	9.67	1/982	1/7748
SNV	Breast	RASAL3_A674V_8	HLA-C04:01	FLEEHGPVM	0.9996	0.882	0.0266	131.25	0.0807	9.67	1/982	1/7748
SNV	Breast	RASEF_S233I_5	HLA-B44:03	EEALIDLRRQY	0.9999	0.9407	0.1289	2.36	0.0467	5.99	1/982	1/7748
SNV	Breast	RBBP5_G163R_7	HLA-B57:01	ASFDRRREY	0.98	0.9141	0.6055	36.66	0.208	40.19	1/982	1/7748
SNV	Breast	RBBP5_G163R_6	HLA-C04:01	SFDRRREYI	0.9519	0.5464	0.0266	101.55	0.0744	40.19	1/982	1/7748
SNV	Breast	RELA_R166W_2	HLA-C04:01	VWDPSGRPL	0.9986	0.9412	0.001	8.25	0.019	99.47	1/982	1/7748
SNV	Breast	RELA_R166W_2	HLA-C04:01	VWDPSGRPLRL	1	0.9573	0.0455	95.51	0.0729	99.47	1/982	1/7748
SNV	Breast	RFWD3_S735L_8	HLA-C04:01	LWDAASGLL	0.9962	0.9636	0.0089	5.13	0.0126	9.14	1/982	1/7748
SNV	Breast	RFWD3_S735L_8	HLA-C04:01	LWDAASGLLL	0.9996	0.9698	0.0471	112.12	0.0767	9.14	1/982	1/7748
SNV	Breast	RNPEP_R246G_5	HLA-B57:01	EVGPGSRVW	0.867	0.9023	0.4301	65.1	0.2521	170.49	1/982	1/7748
SNV	Breast	RNPEP_R246G_6	HLA-B57:01	AEVGPGSRVW	0.9991	0.9086	0.9014	38.13	0.211	170.49	1/982	1/7748
SNV	Breast	RNPEP_R246G_7	HLA-B57:01	SAEVGPGSRVW	1	0.9432	0.2407	387.46	0.4561	170.49	1/982	1/7748
SNV	Breast	RNPEP_R246G_6	HLA-B44:03	AEVGPGSRV	0.9273	0.9596	0.2505	9.65	0.1215	170.49	1/982	1/7748
SNV	Breast	RNPEP_R246G_6	HLA-B44:03	AEVGPGSRVW	0.9998	0.9522	0.0055	1.11	0.004	170.49	1/982	1/7748
SNV	Breast	RNPEP_R246G_7	HLA-B44:03	SAEVGPGSRVW	0.9988	0.9533	1.8142	32.75	0.189	170.49	1/982	1/7748
SNV	Breast	RNPEP_R246G_6	HLA-B44:03	AEVGPGSRVWA	0.9952	0.9567	0.6785	72.86	0.2599	170.49	1/982	1/7748
SNV	Breast	RPS6_S139N_3	HLA-B57:01	RANRIRKLF	0.9879	0.9584	0.2346	2.44	0.0295	1946.68	1/982	1/7748
SNV	Breast	SATB2_D691V_5	HLA-B44:03	AEYKVEELL	0.9839	0.9825	0.1055	6.01	0.096	9.64	1/982	1/7748
SNV	Breast	SECISBP2L_T512S_2	HLA-B57:01	ISNTRPLSY	0.9985	0.8834	0.7184	81.06	0.2677	34.53	1/982	1/7748
SNV	Breast	SEMA6A_V210I_3	HLA-B57:01	RTIKHDSKW	0.9995	0.9206	0.0006	1.05	0.0013	1.13	1/982	1/7748
SNV	Breast	SEMA6A_V210I_3	HLA-B57:01	RTIKHDSKWL	0.9857	0.9699	0.9089	5.54	0.0688	1.13	1/982	1/7748
SNV	Breast	SEMA6A_V210I_5	HLA-B57:01	TLRTIKHDSKW	0.9996	0.947	0.8375	71.41	0.2587	1.13	1/982	1/7748
SNV	Breast	SEMA6A_V210I_9	HLA-B44:03	GESPTLRTI	0.9966	0.9789	0.2446	15.78	0.1463	1.13	1/982	1/7748
SNV	Breast	SEPT8_S20P_4	HLA-B57:01	RSLPLGGHVGF	0.9999	0.9753	0.0619	497.17	0.4889	40.65	1/982	1/7748
SNV	Breast	SIPA1L1_E1173G_5	HLA-B57:01	KSMPGGFGV	0.7309	0.9962	0.8017	86.39	0.2723	11.45	1/982	1/7748
SNV	Breast	SKIV2L_A455V_1	HLA-B57:01	VTVPNALEF	0.9973	0.9252	0.0641	7.3	0.0872	70.31	1/982	1/7748
SNV	Breast	SLC23A2_T152A_3	HLA-B57:01	ITALLQTTF	0.9973	0.9923	0.0619	11.24	0.1147	11.87	1/982	1/7748
SNV	Breast	SLC37A1_L130P_4	HLA-A24:02	RYYPTFGML	0.9912	0.5799	0.0275	2.74	0.0903	19.46	1/982	1/7748
SNV	Breast	SLC9A9_M460V_8	HLA-B44:03	TESQPKQVM	0.9978	0.9028	0.1802	58.74	0.2423	4.57	1/982	1/7748
SNV	Breast	SLC9A9_M460V_8	HLA-B44:03	TESQPKQVMF	0.999	0.8657	0.062	17.33	0.1509	4.57	1/982	1/7748
SNV	Breast	SOX13_G15D_4	HLA-C04:01	ALDDVGTMV	0.9974	0.7305	0.0727	68.38	0.0633	47.81	1/982	1/7748
SNV	Breast	STAP2_E248G_1	HLA-B44:03	GDYEKVLGY	0.6927	0.7303	0.5799	240.41	0.3514	83.32	1/982	1/7748
SNV	Breast	STON2_S231N_5	HLA-A24:02	ARFPNWVTF	0.8324	0.5189	0.7049	94.4	0.4446	79.12	1/982	1/7748
SNV	Breast	STON2_S231N_7	HLA-B57:01	TSARFPNW	0.9998	0.9933	0.4079	259.26	0.4032	79.12	1/982	1/7748
SNV	Breast	STON2_S231N_8	HLA-B57:01	VTSARFPNW	0.9994	0.9892	0.008	1.66	0.0175	79.12	1/982	1/7748
SNV	Breast	STON2_S231N_6	HLA-B57:01	SARFPNWVTF	0.9997	0.9945	1.1207	481.65	0.4848	79.12	1/982	1/7748
SNV	Breast	SVEP1_C3046R_3	HLA-B57:01	ITREADGQW	0.9984	0.9629	0.0326	1.27	0.0066	1.66	1/982	1/7748
SNV	Breast	SVEP1_C3046R_4	HLA-B57:01	EITREADGQW	0.9812	0.9066	0.9668	107.17	0.2876	1.66	1/982	1/7748
SNV	Breast	SVEP1_C3046R_5	HLA-B57:01	SEITREADGQW	0.9999	0.9619	1.6408	84.05	0.2703	1.66	1/982	1/7748
SNV	Breast	SVEP1_C3046R_5	HLA-B44:03	SEITREADGQW	0.9999	0.9518	0.0365	11.49	0.1306	1.66	1/982	1/7748
SNV	Breast	SVEP1_C3046R_1	HLA-B44:03	READGQWSSGF	0.9984	0.8336	0.1001	29.96	0.1815	1.66	1/982	1/7748
SNV	Breast	TBC1D13_E118K_6	HLA-C06:02	YFKDNKVLL	0.9607	0.988	0.2515	160.64	0.1198	38.03	1/982	2/7748
SNV	Breast	TBC1D13_E118K_6	HLA-C04:01	YFKDNKVLL	0.5918	0.6411	0.0455	53.74	0.0573	38.03	1/982	1/7748
SNV	Breast	TBC1D25_S53F_1	HLA-C04:01	FFAVDPQITSL	0.9998	0.7808	0.8413	42.7	0.0527	19.74	1/982	1/7748
SNV	Breast	TDP2_D51H_8	HLA-B57:01	QCFLAENHW	0.9944	0.9829	0.1864	146.3	0.3201	60.72	1/982	1/7748
SNV	Breast	TDP2_D51H_6	HLA-C04:01	FLAENHWEM	0.9957	0.8248	0.7091	53.7	0.0573	60.72	1/982	1/7748
SNV	Breast	TEAD4_A264V_3	HLA-B44:03	LEVVDIRQI	0.943	0.9031	0.3628	357.58	0.3826	43.76	1/982	1/7748
SNV	Breast	TEAD4_A264V_3	HLA-B44:03	LEVVDIRQIY	0.9972	0.8355	0.1074	5.86	0.095	43.76	1/982	1/7748
SNV	Breast	TEAD4_A264V_9	HLA-C04:01	SYSDPYLEV	0.9668	0.812	0.2106	137.44	0.0824	43.76	1/982	1/7748
SNV	Breast	TGS1_V515A_2	HLA-B57:01	KAEKFLTW	0.9997	0.9972	0.3403	61.47	0.2478	15.53	1/982	1/7748
SNV	Breast	TGS1_V515A_4	HLA-B57:01	LSKAEKFLTW	1	0.9971	0.0388	6.3	0.0762	15.53	1/982	1/7748
SNV	Breast	TJP1_A1186T_1	HLA-B44:03	TESKQYFEQY	0.9989	0.9025	0.0563	32.49	0.1884	28.62	1/982	1/7748
SNV	Breast	TMEM184C_Q319R_1	HLA-B44:03	REAEEGSCF	0.959	0.9754	0.1289	9.28	0.1194	32.15	1/982	1/7748
SNV	Breast	TMEM63C_L59I_4	HLA-B57:01	YSFIRKAAW	0.9988	0.9683	0.0107	2.65	0.0323	12.1	1/982	1/7748
SNV	Breast	TMEM63C_L59I_5	HLA-B57:01	VYSFIRKAAW	0.9807	0.9814	1.921	365.35	0.4484	12.1	1/982	1/7748
SNV	Breast	TMEM68_A83V_3	HLA-B44:03	KEVYSHNLW	0.9982	0.9876	0.0047	1.47	0.0216	6.65	1/982	1/7748
SNV	Breast	TNXB_R797W_8	HLA-B57:01	ASPPFTAW	0.9997	0.9963	0.4018	58.27	0.2437	1.6	1/982	1/7748
SNV	Breast	TNXB_R797W_9	HLA-B57:01	GASPPFTAW	0.9989	0.9955	0.022	1.55	0.0147	1.6	1/982	1/7748
SNV	Breast	TNXB_R797W_10	HLA-B57:01	EGASPPFTAW	0.9955	0.9485	0.3403	230.72	0.3865	1.6	1/982	1/7748
SNV	Breast	TNXB_R797W_11	HLA-B44:03	TEGASPPFTAW	0.9997	0.9889	0.0636	8.69	0.1157	1.6	1/982	1/7748
SNV	Breast	TPM2_A247V_9	HLA-B44:03	AEFAERSVV	0.9649	0.9866	0.2845	187.49	0.3319	10.66	1/982	1/7748
SNV	Breast	TRIM45_P471H_1	HLA-B44:03	HKEPGVYTVW	0.8101	0.9814	0.7714	54.53	0.2354	26.93	1/982	1/7748
SNV	Breast	TSR1_K507R_1	HLA-B57:01	RSFRTSPW	0.9989	0.9778	0.4587	16.38	0.1397	35.11	1/982	1/7748
SNV	Breast	TUBGCP6_P1129S_6	HLA-B57:01	VAPTRSRW	0.9997	0.9469	1.1652	310.06	0.4268	19.03	1/982	1/7748
SNV	Breast	TUBGCP6_P1129S_7	HLA-B57:01	DVAPTRSRW	0.8435	0.939	0.827	60.1	0.2461	19.03	1/982	1/7748
SNV	Breast	TUBGCP6_P1129S_8	HLA-B57:01	SDVAPTRSRW	0.9996	0.9145	1.1851	8.91	0.1003	19.03	1/982	1/7748
SNV	Breast	TUBGCP6_P1129S_9	HLA-B57:01	VSDVAPTRSRW	1	0.8784	0.1009	11.34	0.1153	19.03	1/982	1/7748
SNV	Breast	TUBGCP6_P1129S_8	HLA-B44:03	SDVAPTRSRW	0.9918	0.8504	0.3156	259.86	0.3575	19.03	1/982	1/7748
SNV	Breast	TWIST1_S184I_3	HLA-B57:01	RLIYAFSVW	0.9908	0.9726	0.2453	66.75	0.2539	1.47	1/982	1/7748
SNV	Breast	UBN1_S611Y_9	HLA-B57:01	STKPDKKVY	0.8964	0.7219	0.6055	106.02	0.2869	48.88	1/982	1/7748
SNV	Breast	UBR4_T1607M_6	HLA-C04:01	YLADVMNAL	0.9891	0.8573	0.5264	126.36	0.0795	33.04	1/982	1/7748
SNV	Breast	USP25_Q127H_3	HLA-B44:03	EEHAISRVL	0.9938	0.9599	0.1409	7.76	0.1093	20.67	1/982	1/7748
SNV	Breast	VLDLR_S853G_2	HLA-B57:01	HGASVGHTY	0.5378	0.9909	1.8508	470.93	0.4818	31.43	1/982	1/7748
SNV	Breast	VMA21_N61I_3	HLA-B57:01	MSIRDSYFY	0.9964	0.7033	0.1864	128.6	0.3013	22.53	1/982	1/7748
SNV	Breast	VTCN1_G111D_3	HLA-C04:01	IVDNASLRL	0.9999	0.7455	0.1103	99.24	0.0738	43.71	1/982	1/7748
SNV	Breast	WAS_H68Y_8	HLA-B44:03	AEHWTKEY	0.9998	0.9822	0.2355	70.16	0.2571	16.84	1/982	1/7748
SNV	Breast	WAS_H68Y_3	HLA-B44:03	KEYCGAVCF	0.9932	0.9052	0.0786	137.5	0.3076	16.84	1/982	1/7748
SNV	Breast	WDR44_N618S_5	HLA-A24:02	SWSKSYFLL	0.9902	0.5279	0.0259	4.79	0.1412	22.59	1/982	1/7748
SNV	Breast	ZFPL1_R222W_10	HLA-B57:01	KVYDTRDDDW	0.9996	0.7954	0.2024	25.98	0.1814	18.6	1/982	1/7748
SNV	Breast	ZNF225_S333G_6	HLA-B57:01	KSALNGHRM	0.9884	0.9749	0.6485	37.46	0.2097	2.73	1/982	1/7748
SNV	Breast	ZNF236_R1823Q_5	HLA-B44:03	EELSQTLHL	0.9959	0.9182	0.0897	14.94	0.1436	4.08	1/982	1/7748
SNV	Breast	ZNF44_R201H_6	HLA-B57:01	KGLSYHHSF	0.9956	0.9427	0.4446	203.44	0.3682	8.29	1/982	1/7748
SNV	Breast	ZNF573_Y358S_1	HLA-B44:03	SECKECKKTF	0.9844	0.9044	0.1565	296.9	0.368	1.89	1/982	1/7748
SNV	Breast	ZNF600_L569I_9	HLA-B57:01	KTFSHKPSI	0.9969	0.9016	0.3063	10.58	0.111	6.72	1/982	1/7748
SNV	Breast	ZNF654_S444L_3	HLA-B57:01	VSLDPALKI	0.9971	0.8766	0.4671	453.84	0.4769	12.85	1/982	1/7748
SNV	Breast	ZNF692_P180T_5	HLA-B57:01	RVGPTPETF	0.9964	0.9961	0.2291	12.17	0.1197	13.21	1/982	1/7748
SNV	Breast	ANO5_D379N_4	HLA-C12:03	HLFNNESTV	0.8398	0.9805	0.9511	354.56	0.939	1.97	1/982	1/7748
SNV	Breast	ANO5_D379N_2	HLA-C12:03	FNNESTVFF	0.6837	0.9863	1.0418	420.63	1.0038	1.97	1/982	1/7748
SNV	Breast	ARAP3_R853W_9	HLA-B44:03	PEDMVHLRW	0.988	0.8901	0.5944	27.82	0.1752	6.44	1/982	1/7748
SNV	Breast	ARAP3_R853W_10	HLA-B44:03	APEDMVHLRW	0.8295	0.9467	1.708	7.57	0.1079	6.44	1/982	1/7748
SNV	Breast	C14orf37_F225L_9	HLA-C16:01	TTNPKTEKL	0.7776	0.973	0.1548	57.29	0.3116	4.21	1/982	1/7748
SNV	Breast	C14orf37_F225L_9	HLA-C12:03	TTNPKTEKL	0.7776	0.9716	0.2999	107.77	0.5422	4.21	1/982	1/7748
SNV	Breast	C9orf78_D276A_7	HLA-B44:03	NEKATDAYHY	0.9986	0.7099	0.1353	10.8	0.1275	43.63	1/982	1/7748
SNV	Breast	C9orf78_D276A_7	HLA-B18:01	NEKATDAY	0.9979	0.568	0.1308	124.94	0.1702	43.63	1/982	1/7748
SNV	Breast	C9orf78_D276A_7	HLA-B18:01	NEKATDAYHY	0.9858	0.5003	0.1746	329.21	0.2325	43.63	1/982	1/7748
SNV	Breast	CCL13_T67N_7	HLA-C16:01	KAVIFRNKL	0.8378	0.972	0.2306	19.42	0.167	10.37	1/982	1/7748
SNV	Breast	CCL13_T67N_7	HLA-C12:03	KAVIFRNKL	0.534	0.9752	0.2391	58	0.3941	10.37	1/982	1/7748
SNV	Breast	COA7_G115S_8	HLA-C16:01	IAACHNVSL	0.9923	0.9662	0.0503	9.4	0.0951	20.12	1/982	1/7748
SNV	Breast	COA7_G115S_8	HLA-C12:03	IAACHNVSL	0.9994	0.9521	0.0196	22.55	0.2277	20.12	1/982	1/7748
SNV	Breast	COX10_R355S_2	HLA-C16:01	RSVALRHCL	0.9638	0.9926	0.7424	349.29	0.7367	20.35	1/982	1/7748
SNV	Breast	CPT1A_A591G_3	HLA-B44:03	YEGSMTRLF	0.991	0.8773	0.0469	3.25	0.0658	66.33	1/982	1/7748
SNV	Breast	CPT1A_A591G_3	HLA-B18:01	YEGSMTRLF	0.9981	0.8883	0.0638	8.59	0.0575	66.33	1/982	1/7748
SNV	Breast	CPT1A_A591G_5	HLA-C16:01	LTYEGSMTRL	0.9804	0.9791	1.1024	427.86	0.7942	66.33	1/982	1/7748
SNV	Breast	CPT1A_A591G_5	HLA-C12:03	LTYEGSMTRL	0.999	0.9828	0.8589	165.86	0.6681	66.33	1/982	1/7748
SNV	Breast	DGKA_S566F_8	HLA-B18:01	FEFATSEF	0.9993	0.9749	0.0481	7.6	0.0513	10.64	1/982	1/7748
SNV	Breast	DNAH2_V2949E_2	HLA-B44:03	KEAQIFVTM	0.9962	0.8987	0.0674	5.58	0.0928	2.25	1/982	1/7748
SNV	Breast	DNAH2_V2949E_2	HLA-B44:03	KEAQIFVTMHW	0.9998	0.9868	0.131	27.32	0.1742	2.25	1/982	1/7748
SNV	Breast	DNAH2_V2949E_2	HLA-B18:01	KEAQIFVTM	0.9776	0.9577	0.036	5.95	0.0408	2.25	1/982	1/7748
SNV	Breast	GOLGB1_E1368K_8	HLA-B44:03	HEAEVHAKSL	0.9802	0.9868	0.1655	58.76	0.2424	117.86	1/982	1/7748
SNV	Breast	GOLGB1_E1368K_3	HLA-C12:03	HAKSLQQKL	0.9693	0.9758	0.1782	111.12	0.5504	117.86	1/982	2/7748
SNV	Breast	LRP2_C3692Y_11	HLA-B44:03	TEFSCKTNYRY	0.9998	0.9174	0.1825	239.91	0.3513	17.61	1/982	1/7748
SNV	Breast	MAST2_R1152P_6	HLA-B44:03	SEAGLPQGDL	0.8645	0.9284	0.4701	131.06	0.3038	38.96	1/982	1/7748
SNV	Breast	PADI2_A32T_1	HLA-C16:01	TAPAGAQTF	0.6359	0.9834	0.0891	129.38	0.4784	16.21	1/982	1/7748
SNV	Breast	PADI2_A32T_1	HLA-C12:03	TAPAGAQTF	0.8645	0.9763	0.1311	120.34	0.5717	16.21	1/982	1/7748
SNV	Breast	PADI2_A32T_2	HLA-C12:03	STAPAGAQTF	0.9977	0.9666	0.1836	425.86	1.0089	16.21	1/982	1/7748
SNV	Breast	PIK3CA_E545K_5	HLA-B44:03	SEITKQEKDF	0.9989	0.8114	0.0872	10.32	0.1253	18.19	6/982	18/7748
SNV	Breast	RTTN_R1310H_3	HLA-B44:03	VEHGGNAMSF	0.9968	0.9822	0.0511	21.96	0.163	7.56	1/982	1/7748
SNV	Breast	RTTN_R1310H_3	HLA-B18:01	VEHGGNAMSF	0.9661	0.9568	0.0574	89.34	0.1457	7.56	1/982	1/7748
SNV	Breast	RTTN_R1310H_4	HLA-C16:01	YVEHGGNAM	0.7359	0.9613	0.3441	151.74	0.5131	7.56	1/982	1/7748
SNV	Breast	RTTN_R1310H_4	HLA-C12:03	YVEHGGNAM	0.8119	0.9529	0.4146	48.05	0.3614	7.56	1/982	1/7748
SNV	Breast	TENM3_R1154L_5	HLA-C12:03	MGNGLRRSI	0.8992	0.9784	1.7994	267.86	0.8395	6.01	1/982	1/7748
SNV	Breast	ZFYVE19_R180P_5	HLA-C16:01	MIAEPLARL	0.9926	0.9771	0.6358	30.63	0.2171	25.91	1/982	1/7748
SNV	Breast	ZFYVE19_R180P_5	HLA-C12:03	MIAEPLARL	0.9994	0.9707	0.3591	15.29	0.1773	25.91	1/982	1/7748
SNV	Breast	ZNF675_H491R_5	HLA-C16:01	KAFKRSSSL	0.9802	0.9634	0.0008	1.71	0.008	11.31	1/982	1/7748
SNV	Breast	ZNF675_H491R_5	HLA-C12:03	KAFKRSSSL	0.9913	0.9644	0.0096	1.79	0.0082	11.31	1/982	1/7748
SNV	Breast	LAMB3_R245H_8	HLA-C07:02	YYAVSQLHL	0.5006	0.8992	0.1285	16.3	0.0691	9.31	1/982	2/7748
SNV	Breast	PIK3CB_V645L_8	HLA-A02:01	YLLQLVQL	0.9938	0.8098	1.6549	358.19	0.6019	27.15	1/982	1/7748
SNV	Breast	PIK3CB_V645L_8	HLA-A02:01	YLLQLVQLL	0.984	0.8112	0.043	2.08	0.047	27.15	1/982	1/7748
SNV	Breast	PIK3CB_V645L_2	HLA-A02:01	QLLKYEPFL	0.9773	0.7807	0.1554	13.27	0.1819	27.15	1/982	1/7748
SNV	Breast	SUSD5_I624F_7	HLA-C07:02	RHYHQQFEM	0.9234	0.9797	0.0226	161.33	0.2451	1.45	1/982	1/7748
SNV	Breast	ANGPTL2_N362I_6	HLA-C03:04	LTNQGIYKL	0.9934	0.9622	0.3955	424.47	0.4761	51.38	1/982	1/7748
SNV	Breast	COL27A1_G994R_9	HLA-B07:02	RPGPVGEQRF	0.999	0.6169	0.4005	439.57	0.3906	9.95	1/982	1/7748
SNV	Breast	COL27A1_G994R_2	HLA-C07:02	QRFMGFIGL	0.9935	0.9512	0.1136	19.38	0.0757	9.95	1/982	1/7748
SNV	Breast	FES_W726R_1	HLA-B15:01	RTAPEALNY	0.9986	0.8843	0.3957	6.91	0.0656	9.95	1/982	1/7748
SNV	Breast	FES_W726R_5	HLA-B07:02	VPVKRTAPEAL	0.9999	0.5642	0.2125	34.41	0.1841	9.95	1/982	1/7748
SNV	Breast	GPR89B_S162F_4	HLA-A02:01	ALLFGFGAV	0.9842	0.7873	0.0835	92.1	0.3809	2.3	1/982	1/7748
SNV	Breast	HCN3_Y95N_4	HLA-C07:02	FRFNWDLIM	0.9825	0.9233	0.0262	9.26	0.0447	3.17	1/982	1/7748
SNV	Breast	KAT5_G483V_4	HLA-C03:04	IVDVHERAM	0.9985	0.9792	0.0691	355.16	0.4473	38.77	1/982	1/7748
SNV	Breast	PTPRA_V413A_7	HLA-C07:02	SWPDFGAPF	0.5553	0.978	0.2402	356.88	0.3477	120.08	1/982	1/7748
SNV	Breast	REV3L_V803F_8	HLA-A02:01	YMFFPSVFL	0.9901	0.5361	0.007	3.21	0.0706	11.3	1/982	1/7748
SNV	Breast	REV3L_V803F_9	HLA-C07:02	HYMFFPSVF	0.6326	0.9271	0.0862	11.73	0.0554	11.3	1/982	1/7748
SNV	Breast	REV3L_V803F_8	HLA-C07:02	YMFFPSVFL	0.6575	0.9642	1.7665	447.38	0.381	11.3	1/982	1/7748
SNV	Breast	REV3L_V803F_8	HLA-C03:04	YMFFPSVFL	0.99	0.9942	0.5296	73.79	0.2428	11.3	1/982	1/7748
SNV	Breast	RGAG4_Q169L_9	HLA-C07:02	VYLAEFLML	0.5107	0.9306	0.659	436.21	0.3773	8.28	1/982	1/7748
SNV	Breast	RGAG4_Q169L_8	HLA-C07:02	YLAEFLMLL	0.5788	0.9229	1.51	381.55	0.3575	8.28	1/982	1/7748
SNV	Breast	RGAG4_Q169L_8	HLA-C03:04	YLAEFLMLL	0.9801	0.9818	0.5621	140.77	0.3132	8.28	1/982	1/7748
SNV	Breast	SETBP1_F990S_5	HLA-C07:02	FRINSDHYY	0.8531	0.8568	0.052	9.38	0.0454	19.32	1/982	1/7748
SNV	Breast	SLC7A2_Y598S_8	HLA-C03:04	MAIGFLISF	0.9992	0.9902	0.0241	18.29	0.1307	36.49	1/982	1/7748
SNV	Breast	SPI1_R171L_7	HLA-B15:01	GSKKKILLY	0.99	0.8745	0.4806	375.62	0.4698	22.03	1/982	1/7748
SNV	Breast	TBX1_F241L_5	HLA-B15:01	YQPRLHVVY	0.9998	0.5853	0.169	11.04	0.1028	8.63	1/982	1/7748
SNV	Breast	TBX1_F241L_7	HLA-C07:02	HRYQPRLHV	0.8672	0.9597	0.0496	10.91	0.0526	8.63	1/982	1/7748
SNV	Breast	UGGT1_N396S_5	HLA-B15:01	ALFISGLHM	0.9864	0.8436	0.2281	128.94	0.314	47.2	1/982	1/7748
SNV	Breast	WDR45_S296I_1	HLA-A02:01	ILASFTVPA	0.9936	0.7489	0.054	32.98	0.2612	28.43	1/982	1/7748
SNV	Breast	WDR45_S296I_8	HLA-C07:02	QYVDSQWIL	0.5296	0.8792	0.6168	124.2	0.2169	28.43	1/982	1/7748
SNV	Breast	ZNF727_S14F_9	HLA-C07:02	FRDVAVEFF	0.8966	0.9612	0.0435	39.54	0.1153	2.46	1/982	1/7748
SNV	Breast	DHX33_V650M_3	HLA-B07:02	QPMAIHPSSV	0.9949	0.5197	0.1096	486.83	0.3996	18.05	1/982	1/7748
SNV	Breast	DHX33_V650M_3	HLA-B07:02	QPMAIHPSSVL	0.9998	0.5942	0.1461	26.4	0.1702	18.05	1/982	1/7748
SNV	Breast	SYNE2_K660T_8	HLA-B08:01	RLNKRWRTL	0.9936	0.721	0.0348	19.37	0.0626	17.65	1/982	1/7748
SNV	Breast	TBX18_D416N_6	HLA-A02:01	SLAPANYSA	0.9784	0.5664	0.1186	11.54	0.1701	1.74	1/982	1/7748
SNV	Breast	ASPM_I2937M_3	HLA-B57:01	STMKIQAMW	0.9998	0.9656	0.0011	1.14	0.0036	5.53	1/982	1/7748
SNV	Breast	ASPM_I2937M_4	HLA-B57:01	NSTMKIQAMW	0.9998	0.9487	0.2241	46.81	0.2268	5.53	1/982	1/7748
SNV	Breast	ASPM_I2937M_5	HLA-B57:01	KNSTMKIQAMW	0.9999	0.9649	0.3802	46.02	0.2255	5.53	1/982	1/7748
SNV	Breast	BACE1_D407N_1	HLA-B14:02	NRARKRIGF	0.9106	0.5323	0.5461	423.94	0.0791	18.64	1/982	1/7748
SNV	Breast	C3_D1426N_1	HLA-B14:02	NRYISKYEL	0.9971	0.6393	0.0198	7.91	0.0065	583.29	1/982	1/7748
SNV	Breast	CA10_D213V_6	HLA-B57:01	ITYKNVAYL	0.9904	0.9315	0.7011	273.67	0.4103	77.51	1/982	1/7748
SNV	Breast	CAMTA1_E879Q_7	HLA-B57:01	VTDYSPQW	0.9983	0.9531	0.5138	256.3	0.4017	5.64	1/982	1/7748
SNV	Breast	CAMTA1_E879Q_8	HLA-B57:01	MVTDYSPQW	0.9826	0.9428	0.0201	2.75	0.0336	5.64	1/982	1/7748
SNV	Breast	CENPF_P277L_9	HLA-C06:02	SFFDNSSSL	0.8876	0.9923	0.1663	144.58	0.1143	15.79	1/982	1/7748
SNV	Breast	CES2_A366S_8	HLA-B57:01	KSKEEILSI	0.9984	0.9767	0.3535	14.69	0.1321	19.2	1/982	1/7748
SNV	Breast	CSPP1_D42H_7	HLA-B57:01	KMADNLHEF	0.9769	0.9683	0.4446	362.36	0.4473	7.63	1/982	1/7748
SNV	Breast	CSPP1_D42H_6	HLA-C08:02	MADNLHEFI	0.9997	0.9743	0.0127	141.45	0.077	7.63	1/982	1/7748
SNV	Breast	DNAJC10_E633K_5	HLA-B14:02	QRYPKIRFF	0.9536	0.6307	0.4848	72.81	0.0241	17.82	1/982	1/7748
SNV	Breast	DNAJC10_E633K_5	HLA-C06:02	QRYPKIRF	0.9811	0.995	1.3703	259.62	0.1466	17.82	1/982	1/7748
SNV	Breast	DVL3_S241F_9	HLA-B57:01	SSFSSITDF	0.9762	0.8308	0.3174	85.1	0.2712	38.64	1/982	1/7748
SNV	Breast	KDM5C_E1274K_5	HLA-B14:02	VRLPKGEAL	0.9798	0.9584	0.0203	67.66	0.0234	42.45	1/982	1/7748
SNV	Breast	LPXN_P27S_6	HLA-C08:02	YSNPASLPL	0.9922	0.9249	0.1253	16.28	0.0269	59.59	1/982	1/7748
SNV	Breast	MCMDC2_L567V_9	HLA-B14:02	ERMTHGYYV	0.9977	0.5999	0.2888	235.73	0.0607	1.5	1/982	1/7748
SNV	Breast	NBPF3_E413Q_6	HLA-C08:02	LLDEKQPEV	0.9994	0.9866	0.04	28.44	0.0376	6.94	1/982	1/7748
SNV	Breast	PIK3CA_E726K_1	HLA-B57:01	KTQKVQMKF	0.9992	0.9017	0.0271	1.29	0.0069	10.62	1/982	1/7748
SNV	Breast	PPIP5K2_R289Q_3	HLA-B57:01	NAQEKLIAW	0.9977	0.9827	0.0892	83.86	0.2702	7.35	1/982	1/7748
SNV	Breast	PTBP3_S303L_9	HLA-C08:02	FGAPGIISL	0.9897	0.9566	0.1673	42.88	0.0455	49.78	1/982	1/7748
SNV	Breast	TRBV5-1_R34T_3	HLA-B57:01	KTTGQQVTL	0.9865	0.981	0.4233	20.08	0.156	13.88	1/982	1/7748
SNV	Breast	TRIO_D504Y_9	HLA-B57:01	LAYSEVSQY	0.9804	0.8602	0.6055	113.27	0.2916	9.91	1/982	1/7748
SNV	Breast	UTP18_I288V_6	HLA-B57:01	KTNPKVQSI	0.9983	0.937	0.452	6.05	0.0738	722.44	1/982	1/7748
SNV	Breast	UTP18_I288V_6	HLA-B57:01	KTNPKVQSIY	0.9996	0.8993	0.3669	11.37	0.1154	722.44	1/982	1/7748
SNV	Breast	ZNF574_A804T_4	HLA-B57:01	KAFTISMRL	0.9965	0.8317	0.2651	18.08	0.1465	20.43	1/982	1/7748
SNV	Breast	DHX38_D905E_7	HLA-C15:02	KSLGVQELL	0.9994	0.8188	0.0756	74.26	0.3399	30.8	1/982	1/7748
SNV	Breast	GTF3C4_D538N_7	HLA-A02:01	NLFKQVNLI	0.9562	0.5044	0.4415	223.01	0.5246	27.79	1/982	1/7748
SNV	Breast	LAMB3_M1032I_5	HLA-C15:02	LVTSITKQL	0.9946	0.8656	0.4921	436.78	0.7356	21.29	1/982	1/7748
SNV	Breast	MFSD9_G179S_6	HLA-C15:02	TASGVSFIL	0.9983	0.9752	0.1828	200.63	0.5222	7.21	1/982	1/7748
SNV	Breast	MFSD9_G179S_2	HLA-C15:02	VSFILGPVV	0.9983	0.9478	0.4774	204.84	0.5269	7.21	1/982	1/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:05	ARHGGWTTK	0.9983	0.8261	0.1474	11.97	0.2093	16.66	11/982	17/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:05	ARHGGWTTKM	0.9998	0.666	0.0388	24.5	0.2651	16.66	11/982	17/7748
SNV	Breast	PRRC2C_R53H_3	HLA-B27:05	SRHMPPPANL	0.9999	0.8969	0.1474	3.76	0.1189	115.76	1/982	1/7748
SNV	Breast	QSER1_P934L_9	HLA-C15:02	VTVNLSPVL	0.9984	0.8473	0.2943	37.52	0.2275	25.87	1/982	1/7748
SNV	Breast	QSER1_P934L_1	HLA-C15:02	LALQSKMTL	0.998	0.9248	0.3176	72.6	0.3358	25.87	1/982	1/7748
SNV	Breast	ST5_R782H_8	HLA-B27:05	RRFGYCRHL	0.9998	0.8728	0.0729	8.21	0.1778	12.12	1/982	1/7748
SNV	Breast	ST5_R782H_8	HLA-B27:05	RRFGYCRHLL	0.9999	0.8151	0.0902	11.28	0.2049	12.12	1/982	1/7748
SNV	Breast	TUBG1_R217L_6	HLA-C15:02	RIATDLLHI	0.9966	0.8294	0.5068	72	0.3343	67.09	1/982	1/7748
SNV	Breast	USP19_R445H_3	HLA-C15:02	ATHTPMEHV	0.9994	0.8597	0.0535	51.39	0.2774	60.48	1/982	1/7748
SNV	Breast	C1orf52_E109A_6	HLA-C12:03	YVPPPATY	0.9589	0.9647	1.116	72.51	0.4443	16.42	1/982	1/7748
SNV	Breast	FREM2_T1291M_6	HLA-C12:03	HSVEKMVLI	0.905	0.9824	0.283	54.32	0.3827	3.85	1/982	1/7748
SNV	Breast	IPO13_L647V_5	HLA-C12:03	LLSNVFTTL	0.9956	0.9871	0.58	188.22	0.7098	33.92	1/982	1/7748
SNV	Breast	NBPF12_E125Q_4	HLA-C12:03	SLNQHLQAL	0.9979	0.9827	0.3124	78.05	0.4615	10.43	1/982	2/7748
SNV	Breast	SLC6A16_P104L_3	HLA-B27:05	ARLFWSSKTEY	1	0.9355	0.1303	34.92	0.296	2.99	1/982	1/7748
SNV	Breast	SLC6A16_P104L_8	HLA-B18:01	SEVLLARLF	0.9969	0.8652	0.0243	4.12	0.0314	2.99	1/982	1/7748
SNV	Breast	SNRPN_R73L_10	HLA-B27:05	KRVLGLVLLL	0.9999	0.8889	0.0902	2.52	0.0796	32.91	1/982	1/7748
SNV	Breast	SNRPN_R73L_9	HLA-C12:03	RVLGLVLLL	0.7086	0.9919	0.9444	57.82	0.3936	32.91	1/982	1/7748
SNV	Breast	SNRPN_R73L_2	HLA-C12:03	LLGENLVSM	0.9968	0.9931	0.58	447.88	1.0296	32.91	1/982	1/7748
SNV	Breast	CTCF_H284Y_8	HLA-B27:05	RRSNLDRYM	0.9993	0.8911	0.2829	38.27	0.3049	74.6	1/982	1/7748
SNV	Breast	CTCF_H284Y_8	HLA-C07:01	RRSNLDRYM	0.9919	0.5345	0.076	286.82	0.134	74.6	1/982	1/7748
SNV	Breast	MTM1_N180S_4	HLA-A02:01	GLPSHHWRI	0.8961	0.7368	0.6165	217.35	0.5204	18.13	1/982	1/7748
SNV	Breast	PPRC1_R1522H_7	HLA-B27:05	RRYSSYHSH	0.9994	0.8767	0.0809	37.71	0.3033	22.83	1/982	1/7748
SNV	Breast	RUNX1_L290F_5	HLA-C02:02	LSAEFSSRL	0.9281	0.9581	0.3994	241.77	0.297	71.7	1/982	1/7748
SNV	Breast	SCARB1_P412A_8	HLA-C02:02	KIEPVVLAL	0.8817	0.9781	0.2657	91.31	0.1485	49.87	1/982	1/7748
SNV	Breast	BCS1L_S262F_2	HLA-C07:02	LFDDRLNHL	0.9676	0.8862	0.0899	153.52	0.2398	20.13	1/982	1/7748
SNV	Breast	CD1E_M131L_3	HLA-C07:02	CRLNAPQIF	0.8136	0.9138	0.3121	381.64	0.3576	1.97	1/982	1/7748
SNV	Breast	DAAM2_D636N_5	HLA-C07:02	FRILNLEDF	0.8049	0.9733	0.1136	45.1	0.1239	5.1	1/982	1/7748
SNV	Breast	HDHD2_E69Q_2	HLA-C07:02	SQDEIFTSL	0.9822	0.9549	0.0548	415.64	0.3702	52.09	1/982	1/7748
SNV	Breast	HEATR1_E66Q_2	HLA-C07:02	FQAPLFSQL	0.9748	0.9857	0.024	355.68	0.3472	51.28	1/982	1/7748
SNV	Breast	ITGAX_T1093M_5	HLA-C07:02	MRAQMTTVL	0.9384	0.9708	0.0548	5.82	0.0264	10.8	1/982	1/7748
SNV	Breast	ITGAX_T1093M_5	HLA-C07:01	MRAQMTTVL	0.9983	0.8142	0.0334	6.2	0.0114	10.8	1/982	1/7748
SNV	Breast	CLCN4_V483L_3	HLA-A02:01	RMLGIGVEQL	0.9871	0.5475	0.4938	106.9	0.4001	1.67	1/982	1/7748
SNV	Breast	ABCA12_D892Y_8	HLA-B18:01	VELLKQIY	0.9943	0.7911	0.1156	490.17	0.2604	46.52	1/982	1/7748
SNV	Breast	ABCA12_D892Y_1	HLA-B18:01	YELDILRL	0.9987	0.8998	0.2804	262.3	0.2169	46.52	1/982	1/7748
SNV	Breast	ABCA3_H1069Y_1	HLA-C12:02	YASIVVSNF	0.9965	0.9644	0.0288	14.09	0.0406	11.79	1/982	1/7748
SNV	Breast	ABCA3_Q482E_5	HLA-C12:02	FGVPEPWYF	0.6992	0.9932	0.6339	357.01	0.3993	11.79	1/982	1/7748
SNV	Breast	ABCA8_E1564Q_7	HLA-B18:01	QELGDFQEDF	0.828	0.9206	0.2554	442.79	0.253	19.28	1/982	1/7748
SNV	Breast	ABCA8_E1564Q_2	HLA-C05:01	FQEDFDPSV	0.9993	0.9889	0.367	88.53	0.2111	19.28	1/982	1/7748
SNV	Breast	ABCC8_E874Q_7	HLA-C12:02	MQAGILQLL	0.9169	0.9777	0.5871	203.1	0.2845	1.18	1/982	1/7748
SNV	Breast	ABI2_Q179E_2	HLA-B18:01	TEKPPSPPM	0.9686	0.8087	0.1345	322.78	0.2311	4.54	1/982	1/7748
SNV	Breast	ACOT4_I318M_6	HLA-C05:01	KAQGPMLLI	0.994	0.9418	0.377	369.41	0.3651	4.2	1/982	1/7748
SNV	Breast	ACOX2_E102K_6	HLA-B18:01	LEDGRKLGY	0.99	0.6027	0.1812	169.85	0.1892	74.06	1/982	1/7748
SNV	Breast	ACTR3_L147V_7	HLA-C12:02	IAVQAVVAL	0.998	0.9823	0.0145	15.96	0.045	72.79	1/982	1/7748
SNV	Breast	ADAMTS12_K316N_7	HLA-C12:02	IVHHAENTL	0.9151	0.9499	0.1623	333.21	0.3853	13.41	1/982	1/7748
SNV	Breast	ADAMTS16_S185L_7	HLA-C05:01	FLRPLPLHL	0.8045	0.9952	0.3629	47.26	0.1669	5.68	1/982	1/7748
SNV	Breast	ADAMTS16_S185L_7	HLA-C12:02	FLRPLPLHL	0.9945	0.9946	0.083	15.89	0.0448	5.68	1/982	1/7748
SNV	Breast	ADCY9_G1337E_2	HLA-B18:01	TEIEEANEL	0.9293	0.9498	0.1321	13.09	0.0693	1.75	1/982	1/7748
SNV	Breast	ADH1C_T371I_5	HLA-C12:02	KSIRIVLTF	0.7645	0.8931	0.3234	91.14	0.1711	19.51	3/982	3/7748
SNV	Breast	ADH1C_T371I_5	HLA-C12:02	KSIRIVLTF	0.7645	0.8931	0.3234	91.14	0.1711	19.51	3/982	3/7748
SNV	Breast	ADH1C_T371I_5	HLA-C12:02	KSIRIVLTF	0.7645	0.8931	0.3234	91.14	0.1711	19.51	3/982	3/7748
SNV	Breast	ADRM1_L128V_4	HLA-B18:01	NEYVNNPPM	0.9941	0.9374	0.0624	27.67	0.095	73.4	1/982	1/7748
SNV	Breast	AEBP1_D569N_5	HLA-C12:02	HSYKNMRQL	0.6953	0.9622	0.0922	103.05	0.1849	249.35	1/982	1/7748
SNV	Breast	AGO1_Q586E_3	HLA-C05:01	VFEQPVIFL	0.9939	0.9735	0.2979	366.49	0.3641	7.59	1/982	1/7748
SNV	Breast	AGO1_Q586E_4	HLA-C12:02	AVFEQPVIF	0.7967	0.9845	0.1024	11.34	0.0325	7.59	1/982	1/7748
SNV	Breast	AHNAK2_V3003M_4	HLA-C05:01	SVDMSAPKV	0.9999	0.9546	0.0684	8.79	0.0805	3.88	1/982	1/7748
SNV	Breast	AHNAK2_V3003M_9	HLA-C12:02	KSIEVSVDM	0.9639	0.9158	0.2395	377.49	0.4109	3.88	1/982	1/7748
SNV	Breast	AKAP11_E902K_4	HLA-C05:01	MVDKRTDYL	0.9997	0.9665	0.0088	2.18	0.0283	13.64	1/982	1/7748
SNV	Breast	AKAP9_R1947C_4	HLA-C05:01	IIDCLEQEL	0.9999	0.9814	0.0341	35.78	0.1501	17.25	1/982	1/7748
SNV	Breast	ALG10B_M242I_1	HLA-C12:02	ISFKNLSML	0.9805	0.9841	0.1388	474.59	0.4587	1.73	1/982	1/7748
SNV	Breast	ALKBH5_E293Q_8	HLA-A03:01	RLDAPRLQTK	0.9992	0.7011	0.3344	2.44	0.0202	57.59	1/982	1/7748
SNV	Breast	ALOXE3_H132Y_4	HLA-C05:01	LLDYRTREL	0.9999	0.9012	0.0919	15.12	0.1102	1.19	1/982	1/7748
SNV	Breast	ALPK2_S1649L_3	HLA-C12:02	SSLAKTLAF	0.9703	0.9452	0.1164	147.33	0.2295	1.38	1/982	1/7748
SNV	Breast	ANAPC1_E219K_4	HLA-C05:01	PLDKITPLV	0.9999	0.9543	0.2356	136.81	0.2464	3.4	1/982	1/7748
SNV	Breast	ANKEF1_L67F_9	HLA-B18:01	NDIDMVSFF	0.7787	0.9784	0.2824	74.46	0.1369	12.9	1/982	1/7748
SNV	Breast	ANKEF1_L67F_8	HLA-C05:01	DIDMVSFFL	0.999	0.9725	0.6538	482.7	0.3989	12.9	1/982	1/7748
SNV	Breast	ANKRD11_M1579I_8	HLA-C05:01	LLGDGDLIM	0.9914	0.884	0.5615	152.87	0.2577	10.37	1/982	1/7748
SNV	Breast	ANKRD28_D22N_1	HLA-B18:01	NEVRALIF	0.9987	0.5963	0.0558	62.24	0.1283	13.42	1/982	1/7748
SNV	Breast	ANKRD28_D231H_7	HLA-C05:01	LLDLGVHM	1	0.9018	0.1043	418.74	0.381	13.42	1/982	1/7748
SNV	Breast	ANKRD28_D231H_8	HLA-C05:01	YLLDLGVHM	0.9865	0.9592	0.3154	21.63	0.1269	13.42	1/982	1/7748
SNV	Breast	ANKRD28_D231H_8	HLA-C12:02	YLLDLGVHM	0.9919	0.9861	0.1134	12.43	0.036	13.42	1/982	1/7748
SNV	Breast	ANO6_H338Y_1	HLA-C05:01	YPDIGGKII	0.9947	0.7294	0.2823	304.07	0.3405	28.01	1/982	1/7748
SNV	Breast	AP4S1_S99T_8	HLA-B18:01	DEYFSRVTE	0.909	0.8894	0.4467	431.65	0.2511	1.18	1/982	1/7748
SNV	Breast	AP4S1_S99T_1	HLA-B18:01	TELDIMFNL	0.9636	0.7807	0.1584	13.78	0.0707	1.18	1/982	1/7748
SNV	Breast	APEX1_H289Y_3	HLA-C12:02	LSYSLLPAL	0.9862	0.97	0.0545	346.59	0.3933	80.01	1/982	1/7748
SNV	Breast	APEX2_S293C_8	HLA-C05:01	VIDTFQACF	0.9982	0.9891	0.1939	105.24	0.2251	26.78	1/982	1/7748
SNV	Breast	ARHGAP20_I88V_3	HLA-C12:02	LLVDGRAEL	0.9986	0.9708	0.432	206.74	0.2882	3.38	1/982	1/7748
SNV	Breast	ARHGAP29_Q871E_2	HLA-B18:01	NEARLVEF	0.9997	0.7067	0.0519	54.65	0.1225	9.37	1/982	1/7748
SNV	Breast	ARHGAP42_E190Q_5	HLA-B18:01	QEVQQKKKF	0.9824	0.7313	0.0544	132.39	0.175	2.98	1/982	1/7748
SNV	Breast	ARHGEF15_G737A_1	HLA-C12:02	AAFPTPGPL	0.995	0.9931	0.0116	38.84	0.095	2.21	1/982	1/7748
SNV	Breast	ARHGEF3_I301M_9	HLA-C12:02	IIQGIVAEM	0.9989	0.9801	0.1549	218.67	0.2998	10.65	1/982	1/7748
SNV	Breast	ARID1A_M1273I_3	HLA-C12:02	VAIGPRQHY	0.8556	0.8821	0.0379	73.71	0.147	31.91	1/982	1/7748
SNV	Breast	ARID2_K371N_3	HLA-C05:01	FLNMRGMEI	0.9846	0.9865	0.7501	48.31	0.1682	9.62	1/982	1/7748
SNV	Breast	ARID2_K371N_8	HLA-C12:02	MSRDRFLNM	0.9882	0.9638	0.1426	258.58	0.3338	9.62	1/982	1/7748
SNV	Breast	ARID3A_S101L_9	HLA-C12:02	AAREGTPGL	0.9504	0.9877	0.3359	256.22	0.332	2.11	1/982	1/7748
SNV	Breast	ARVCF_E656Q_8	HLA-B18:01	TEAAKGFQL	0.9446	0.8152	0.3461	316.6	0.2298	14	1/982	1/7748
SNV	Breast	ARVCF_E656Q_6	HLA-C12:02	AAKGFQLLY	0.8429	0.9575	0.1549	375.55	0.4098	14	1/982	1/7748
SNV	Breast	ASNS_Q492K_4	HLA-B18:01	VEHKVDDAM	0.888	0.5196	0.0525	252.48	0.2142	13.49	1/982	1/7748
SNV	Breast	ASPM_H3021D_3	HLA-B52:01	IADEHFLMI	0.9071	0.9715	0.257	385.44	0.0511	6.55	1/982	1/7748
SNV	Breast	ASPM_H3021D_3	HLA-C05:01	IADEHFLM	1	0.9438	0.0454	71.41	0.1945	6.55	1/982	1/7748
SNV	Breast	ASPM_H3021D_4	HLA-C05:01	KIADEHFLM	0.9964	0.9536	1.3339	161.22	0.2639	6.55	1/982	1/7748
SNV	Breast	ASPM_H3021D_3	HLA-C05:01	IADEHFLMI	0.9999	0.9464	0.0021	1.3	0.0101	6.55	1/982	1/7748
SNV	Breast	ASPM_H3021D_4	HLA-C12:02	KIADEHFLM	0.9287	0.9718	1.0169	462.09	0.4531	6.55	1/982	1/7748
SNV	Breast	ASTN1_E580Q_1	HLA-B18:01	QELMTSSSF	0.9943	0.7204	0.0201	4.84	0.0354	3.39	1/982	1/7748
SNV	Breast	ASTN2_D292N_8	HLA-B18:01	RETPILDNY	0.9019	0.9051	0.1875	78.4	0.1394	10.42	1/982	1/7748
SNV	Breast	ATG7_P197S_8	HLA-B18:01	TEGVTALSY	0.9886	0.9065	0.028	7.95	0.0536	7.67	1/982	1/7748
SNV	Breast	ATL2_L65V_1	HLA-C05:01	VAHEDDHNFEL	0.9999	0.9759	0.4678	499.03	0.4042	18.59	1/982	1/7748
SNV	Breast	ATP2B4_G196A_7	HLA-C12:02	FSIIRNAQL	0.9978	0.9138	0.0761	117.87	0.2	40.07	1/982	1/7748
SNV	Breast	ATP2C2_E337Q_7	HLA-C12:02	AVAAIPQGL	0.7907	0.9786	0.8271	252.69	0.3291	16.65	1/982	1/7748
SNV	Breast	ATP2C2_E337Q_5	HLA-C12:02	AAIPQGLPI	0.9432	0.968	0.0739	70.38	0.1411	16.65	1/982	1/7748
SNV	Breast	ATP6V1A_S87F_1	HLA-C05:01	FVELGPGIM	0.9991	0.9892	0.2274	200.49	0.289	71.99	1/982	1/7748
SNV	Breast	ATXN1_R332Q_7	HLA-B18:01	GEMEKSQRY	0.9966	0.8332	0.0935	8.17	0.055	7.36	1/982	1/7748
SNV	Breast	BAD_M117I_1	HLA-C05:01	ISDEFVDSF	0.9995	0.8835	0.0334	2.51	0.0336	23.89	1/982	1/7748
SNV	Breast	BAG5_E76Q_7	HLA-C12:02	RAAQETQRL	0.5702	0.974	0.3865	354.75	0.398	20.64	1/982	1/7748
SNV	Breast	BAZ2B_E1943K_5	HLA-C05:01	KGDNKELLL	0.9999	0.9502	0.101	235.86	0.3084	4.11	1/982	1/7748
SNV	Breast	BCL2L1_E98K_4	HLA-B18:01	DEFKLRYRRAF	0.9886	0.8363	0.8992	356.24	0.2379	99.01	1/982	1/7748
SNV	Breast	BIRC6_S4205L_5	HLA-C12:02	LQSPLANVL	0.9588	0.9771	0.5871	435.01	0.4405	16.58	1/982	1/7748
SNV	Breast	BRWD1_E1146Q_4	HLA-B18:01	DELQKLLY	0.9997	0.6698	0.0525	25.26	0.0912	8.73	1/982	1/7748
SNV	Breast	BRWD1_E1146Q_6	HLA-C05:01	TTDELQKLL	1	0.8748	0.0158	4.79	0.0547	8.73	1/982	1/7748
SNV	Breast	BTBD7_R691Q_8	HLA-B52:01	VSYEIQIQV	0.973	0.8906	0.1865	277.74	0.0399	7.95	1/982	1/7748
SNV	Breast	BTBD7_R691Q_6	HLA-B18:01	YEIQIQVL	0.9958	0.8918	0.091	32.94	0.1023	7.95	1/982	1/7748
SNV	Breast	BTBD7_R691Q_8	HLA-C12:02	VSYEIQIQV	0.761	0.9429	0.2591	300.66	0.3644	7.95	1/982	1/7748
SNV	Breast	BTBD7_R691Q_4	HLA-C12:02	IQIQVLREF	0.914	0.9714	0.7891	395.72	0.4208	7.95	1/982	1/7748
SNV	Breast	BTN2A2_R99I_6	HLA-B18:01	EEYRGIITF	0.9978	0.5889	0.0032	1.1	0.001	2	1/982	1/7748
SNV	Breast	BTN2A2_R99I_7	HLA-B18:01	MEEYRGIITF	0.9947	0.5787	0.2026	6.91	0.0471	2	1/982	1/7748
SNV	Breast	BTN2A2_R99I_6	HLA-B18:01	EEYRGIITFV	0.7415	0.7839	1.097	179.56	0.1924	2	1/982	1/7748
SNV	Breast	BUB3_E213K_7	HLA-C05:01	YLDPSPKV	1	0.9837	0.0291	4.69	0.0537	17.98	1/982	1/7748
SNV	Breast	C10orf76_I124M_5	HLA-C05:01	GFDIMNMLM	0.9913	0.9177	0.5234	174.26	0.2728	8.69	1/982	1/7748
SNV	Breast	C10orf88_S232F_1	HLA-C12:02	FGYKHMIGL	0.9703	0.9611	0.432	143.6	0.2261	3.45	1/982	1/7748
SNV	Breast	C21orf58_P129L_2	HLA-C05:01	RLDDALQTA	0.9998	0.9844	0.2198	26.63	0.1365	1.24	1/982	2/7748
SNV	Breast	C21orf58_P129L_2	HLA-C05:01	RLDDALQTAL	1	0.9913	0.0133	4.61	0.0529	1.24	1/982	2/7748
SNV	Breast	C4B_H1150Y_9	HLA-C12:02	TAFVTIALY	0.7288	0.9611	0.2483	151.02	0.2328	7.01	1/982	1/7748
SNV	Breast	C4B_H1150Y_4	HLA-C12:02	IALYHGLAV	0.7979	0.966	0.1851	253.74	0.33	7.01	1/982	1/7748
SNV	Breast	C4B_H1150Y_3	HLA-C12:02	ALYHGLAVF	0.822	0.984	0.4196	423.16	0.4348	7.01	1/982	1/7748
SNV	Breast	C7orf43_R364H_1	HLA-C05:01	HLDRPCFVM	0.9996	0.9901	0.049	44.58	0.1634	11.91	1/982	1/7748
SNV	Breast	C9orf72_R373T_2	HLA-C05:01	HTDTLVKAF	0.9997	0.8547	0.088	27.4	0.1378	2.42	1/982	1/7748
SNV	Breast	CACNA1G_H2083Y_1	HLA-C12:02	YSQPADTSY	0.7853	0.9298	0.0184	15.19	0.0432	1.36	1/982	1/7748
SNV	Breast	CACNA1G_S1598F_5	HLA-C05:01	YSDYFRFRL	0.9998	0.7941	0.1211	3.41	0.0433	1.36	1/982	1/7748
SNV	Breast	CAD_E993K_4	HLA-C05:01	YFDKISFEV	0.9996	0.9466	0.1469	6.87	0.0715	9.78	1/982	1/7748
SNV	Breast	CAMKK2_S285F_1	HLA-B18:01	FEDQARFY	0.9982	0.8585	0.2026	117.49	0.1652	17.65	1/982	1/7748
SNV	Breast	CAMKK2_S285F_1	HLA-B18:01	FEDQARFYF	0.9981	0.8353	0.0509	3.41	0.0228	17.65	1/982	1/7748
SNV	Breast	CAMKK2_S285F_10	HLA-B18:01	MEVPTLKPLF	0.9897	0.85	0.1308	215.23	0.2033	17.65	1/982	1/7748
SNV	Breast	CAMSAP1_S563L_3	HLA-C12:02	RALPRALGL	0.7742	0.9861	0.3575	61.64	0.1246	9.97	1/982	1/7748
SNV	Breast	CAMSAP1_S806Y_1	HLA-C05:01	YMASGSVKM	0.9458	0.9818	0.5549	12.57	0.1016	9.97	1/982	1/7748
SNV	Breast	CAMSAP1_S806Y_9	HLA-C12:02	TASQMSSVY	0.7821	0.9403	0.0993	457.35	0.451	9.97	1/982	1/7748
SNV	Breast	CAMSAP1_S806Y_1	HLA-C12:02	YMASGSVKM	0.9969	0.9943	0.0727	8.91	0.0266	9.97	1/982	1/7748
SNV	Breast	CAMSAP2_E908Q_5	HLA-C05:01	FLQQQMQRL	0.9961	0.9398	0.5004	215.76	0.2974	14.43	1/982	1/7748
SNV	Breast	CAND1_L162F_9	HLA-C05:01	ALDIMADMF	0.9972	0.9871	0.2238	20.43	0.1243	41.63	1/982	1/7748
SNV	Breast	CAND1_L162F_1	HLA-C12:02	FSRQGGLLV	0.6233	0.958	0.1388	472.21	0.4576	41.63	1/982	1/7748
SNV	Breast	CASC1_S275F_3	HLA-C05:01	YTFAVTELV	0.7645	0.9782	0.8909	298.58	0.3382	1.19	1/982	1/7748
SNV	Breast	CASC1_S275F_3	HLA-C12:02	YTFAVTELV	0.5083	0.9562	0.0973	361.03	0.4016	1.19	1/982	1/7748
SNV	Breast	CASP8AP2_R964W_7	HLA-A03:01	RVSADVWKSK	0.9978	0.5003	0.1359	28.19	0.1598	6.17	1/982	1/7748
SNV	Breast	CAV1_G11A_6	HLA-C05:01	YVDSEAHL	1	0.9261	0.0278	34.89	0.1489	8.48	1/982	1/7748
SNV	Breast	CAV1_G11A_6	HLA-C05:01	YVDSEAHLY	0.9919	0.8556	0.2238	16.83	0.1152	8.48	1/982	1/7748
SNV	Breast	CCDC14_S39W_7	HLA-B18:01	REASLPWVW	0.7405	0.8743	0.3199	217.1	0.2039	4.6	1/982	1/7748
SNV	Breast	CCDC178_S357L_9	HLA-C05:01	SLFDHYSSL	0.9765	0.8454	0.3154	234.16	0.3075	1.76	1/982	1/7748
SNV	Breast	CCDC178_S357L_9	HLA-C12:02	SLFDHYSSL	0.9868	0.9748	0.0426	13.23	0.0383	1.76	1/982	1/7748
SNV	Breast	CCNT2_D714H_1	HLA-C12:02	HTFDMLDSL	0.677	0.9811	0.0664	25.72	0.0725	10.83	1/982	1/7748
SNV	Breast	CCSER2_S497F_7	HLA-B18:01	TDYRAGFSF	0.7928	0.7802	0.2041	259.26	0.2161	6.76	1/982	1/7748
SNV	Breast	CCT2_E301K_7	HLA-C12:02	LIYNYPKQL	0.9597	0.974	0.4507	151.88	0.2336	94.28	1/982	1/7748
SNV	Breast	CD109_D1284H_6	HLA-C12:02	EAFDLHVAV	0.7974	0.9912	0.4196	371.72	0.4077	3.72	1/982	1/7748
SNV	Breast	CD109_S306L_2	HLA-C05:01	SLNGLSEYL	0.992	0.9442	0.4334	372.68	0.3662	3.72	1/982	1/7748
SNV	Breast	CD109_S306L_6	HLA-C12:02	NVMDSLNGL	0.8411	0.952	0.7891	208.81	0.2902	3.72	1/982	1/7748
SNV	Breast	CD109_S973C_5	HLA-B18:01	REDGCFSAF	0.77	0.9528	0.0615	308.03	0.2279	3.72	1/982	1/7748
SNV	Breast	CD1A_G137E_2	HLA-B18:01	QESDFVSF	0.9983	0.8679	0.0558	19.65	0.0822	1.84	1/982	1/7748
SNV	Breast	CD53_Q108H_3	HLA-B18:01	YEHKLNEY	0.9993	0.9505	0.0161	11.21	0.0654	13.06	1/982	1/7748
SNV	Breast	CD53_Q108H_5	HLA-C12:02	FVYEHKLNEY	0.9985	0.9811	0.2116	79.41	0.1557	13.06	1/982	1/7748
SNV	Breast	CDC5L_L235V_2	HLA-C05:01	AVDADFRKL	0.9999	0.976	0.0209	13.01	0.1032	20.94	1/982	1/7748
SNV	Breast	CDH2_R187T_4	HLA-C05:01	RSDTDKNLSL	1	0.9681	0.0684	139.13	0.2478	2.68	1/982	1/7748
SNV	Breast	CDK17_H52D_3	HLA-C05:01	TSDSMHSFL	0.9999	0.9402	0.0234	9.09	0.0829	16.36	1/982	1/7748
SNV	Breast	CDON_D1104H_7	HLA-C12:02	TAVPQIHPL	0.997	0.97	0.0073	64.53	0.1301	1.89	1/982	1/7748
SNV	Breast	CENPE_H1241Y_7	HLA-B18:01	EELKIAYIH	0.991	0.7937	0.1898	145.56	0.1804	5.32	1/982	1/7748
SNV	Breast	CENPF_S1012L_10	HLA-C05:01	YIDEREKSIL	1	0.9019	0.0968	135.2	0.2455	25.34	1/982	1/7748
SNV	Breast	CEP135_M427I_2	HLA-A03:01	RIRLEHGIKR	0.8995	0.6877	1.2645	236.88	0.385	2.15	1/982	1/7748
SNV	Breast	CEP164_S136L_1	HLA-C05:01	LLAPVHVPL	0.9394	0.9653	1.1386	468.54	0.3952	1.82	1/982	1/7748
SNV	Breast	CEP295_D2243N_1	HLA-B18:01	NEANVFDQL	0.9305	0.7988	0.1321	27.71	0.0951	4.3	1/982	1/7748
SNV	Breast	CEP78_L537F_1	HLA-C05:01	FLKDAGLGQL	0.9982	0.9867	0.5075	269.33	0.3252	5.22	1/982	1/7748
SNV	Breast	CEP83_E230Q_5	HLA-C05:01	GLEAQVAEL	0.9999	0.9556	0.4389	435.85	0.386	3.75	1/982	1/7748
SNV	Breast	CEP97_Q138H_8	HLA-C05:01	LSDNNISHI	0.9999	0.8532	0.0291	11.02	0.0949	3.6	1/982	1/7748
SNV	Breast	CHEK2_L396V_6	HLA-C12:02	LAPEVVVSV	0.9775	0.9905	0.1426	308.56	0.3697	6.61	1/982	1/7748
SNV	Breast	CHRNE_G77E_2	HLA-B18:01	IEIDWQDY	0.9942	0.7987	0.1898	247.04	0.2128	2.02	1/982	1/7748
SNV	Breast	CIAO1_D171H_4	HLA-C12:02	ASYHDTVKL	0.9873	0.9347	0.1228	346.86	0.3934	39.72	1/982	1/7748
SNV	Breast	CIT_S81F_2	HLA-C05:01	YFDTIAEL	1	0.9359	0.1799	330.03	0.3509	3.21	1/982	1/7748
SNV	Breast	CIT_S81F_3	HLA-C12:02	KYFDTIAEL	0.7102	0.9784	1.6387	157.1	0.238	3.21	1/982	1/7748
SNV	Breast	CLCA2_D180N_6	HLA-B18:01	DEYNNNKPF	0.9985	0.786	0.0316	2.94	0.0171	347.13	1/982	1/7748
SNV	Breast	CLCA2_D180N_6	HLA-B18:01	DEYNNNKPFY	0.9955	0.7749	0.1407	34.72	0.1044	347.13	1/982	1/7748
SNV	Breast	CLCA2_M623I_8	HLA-B52:01	LHFPHPVII	0.7619	0.8999	0.2079	117.49	0.0182	347.13	1/982	1/7748
SNV	Breast	CLCN7_F310L_1	HLA-C12:02	LSLEEGASF	0.9388	0.9931	0.1963	308.65	0.3697	20.5	1/982	1/7748
SNV	Breast	CLTC_D1372H_4	HLA-B18:01	EEYHNAIITM	0.9656	0.9619	0.0975	20.55	0.0838	737.25	1/982	1/7748
SNV	Breast	CLUH_I420M_9	HLA-B18:01	EETKMQMFM	0.9569	0.9518	0.1389	142.98	0.1794	25.69	1/982	1/7748
SNV	Breast	CMYA5_E2630D_3	HLA-C05:01	LVDKTKTFL	0.9998	0.9716	0.0158	2.94	0.039	2.52	1/982	1/7748
SNV	Breast	CMYA5_E2630D_4	HLA-C12:02	VLVDKTKTF	0.8816	0.9466	0.2195	153.21	0.2347	2.52	1/982	1/7748
SNV	Breast	CNOT10_H386D_4	HLA-C12:02	QVYDANPRL	0.9583	0.971	0.7021	71.25	0.1427	14.63	1/982	1/7748
SNV	Breast	CNOT6_S391F_6	HLA-C05:01	IIDKAFRNL	0.9999	0.9522	0.0158	27.23	0.1375	21.98	1/982	1/7748
SNV	Breast	COG5_E794Q_8	HLA-A03:01	WLDDHPSQK	0.9062	0.5965	0.6791	461.64	0.4918	10.13	1/982	1/7748
SNV	Breast	COL11A1_G1288A_1	HLA-A03:01	AAAGPPGAK	0.9907	0.8037	0.3796	47.94	0.206	94.71	1/982	1/7748
SNV	Breast	COL11A1_G763A_8	HLA-B52:01	IGYPGPRAV	0.9919	0.9852	0.0879	214.03	0.0295	94.71	1/982	1/7748
SNV	Breast	COL11A1_G763A_8	HLA-C12:02	IGYPGPRAV	0.8908	0.9843	0.2956	63.3	0.1277	94.71	1/982	1/7748
SNV	Breast	COL12A1_E1007K_5	HLA-C05:01	KVDEKTENTM	0.9999	0.9421	0.0419	179.17	0.276	146.69	1/982	1/7748
SNV	Breast	COL14A1_G1578A_8	HLA-C12:02	IGIPGTPAV	0.9254	0.9856	0.3694	183.15	0.2631	2.43	1/982	1/7748
SNV	Breast	COL14A1_G1578A_1	HLA-C12:02	AVPGITGSM	0.938	0.9779	0.3059	325.79	0.3807	2.43	1/982	1/7748
SNV	Breast	COL14A1_P389A_5	HLA-A03:01	VVYYATRGGK	0.9966	0.5095	0.1266	144.42	0.3208	2.43	1/982	1/7748
SNV	Breast	COL4A1_F1074I_9	HLA-C05:01	KGDQGIAGI	0.9996	0.9666	0.1445	402.44	0.3759	113.09	1/982	1/7748
SNV	Breast	COL4A5_P1305L_7	HLA-C05:01	KGDQGPLGL	0.9999	0.9753	0.0711	68.11	0.1912	34.66	1/982	1/7748
SNV	Breast	COL6A3_R59G_8	HLA-B18:01	EEHFQLVGEF	0.9875	0.7985	0.1181	377.16	0.2418	117.43	1/982	1/7748
SNV	Breast	COL6A6_Q1197E_3	HLA-C05:01	STEEKGQTL	0.9999	0.807	0.0194	71.13	0.1942	7.01	1/982	1/7748
SNV	Breast	COMMD10_Q58E_5	HLA-B18:01	EEKLEAAF	0.9994	0.9106	0.1746	310.72	0.2285	21.5	1/982	1/7748
SNV	Breast	COMMD10_Q58E_6	HLA-B18:01	EEEKLEAAF	0.9913	0.9019	0.0425	4.84	0.0354	21.5	1/982	1/7748
SNV	Breast	COMMD1_Q137E_2	HLA-B18:01	AEIHTPVAI	0.7667	0.8141	0.1308	468.21	0.257	18.75	1/982	1/7748
SNV	Breast	COMMD1_Q137E_4	HLA-C12:02	HSAEIHTPV	0.9114	0.9671	0.1812	375.39	0.4097	18.75	1/982	1/7748
SNV	Breast	CPD_H1130N_5	HLA-C12:02	YANNNPSMHM	0.9998	0.9697	0.2956	349.58	0.395	28.73	1/982	1/7748
SNV	Breast	CTC1_E17Q_3	HLA-C05:01	WLQDAQVFI	0.9925	0.9638	1.0285	26.95	0.137	5.78	1/982	1/7748
SNV	Breast	CTSF_G115E_4	HLA-B18:01	DELERHVLL	0.9943	0.8346	0.0737	9.19	0.0605	46.23	1/982	1/7748
SNV	Breast	CTSF_G115E_6	HLA-C05:01	VLDELERHV	0.9999	0.96	0.0158	7.64	0.0753	46.23	1/982	1/7748
SNV	Breast	CTSF_G115E_6	HLA-C05:01	VLDELERHVL	1	0.8503	0.047	50.52	0.1709	46.23	1/982	1/7748
SNV	Breast	CUL4B_E215K_4	HLA-C05:01	YTDKTWQKL	1	0.8697	0.0043	2	0.0244	38.61	1/982	1/7748
SNV	Breast	CXCR6_Q28R_8	HLA-B18:01	EEHQDFLRF	0.9978	0.7383	0.0208	1.67	0.0059	2.22	1/982	1/7748
SNV	Breast	CYBRD1_E263Q_8	HLA-C05:01	NMDKSDSQL	0.9999	0.9218	0.032	36.78	0.1517	34.79	1/982	1/7748
SNV	Breast	DAPK1_D831N_5	HLA-C05:01	FAANNPTSI	0.9979	0.9645	0.1683	26.07	0.1355	1.94	1/982	1/7748
SNV	Breast	DAPK1_D831N_5	HLA-C12:02	FAANNPTSI	0.9974	0.9894	0.0276	4.34	0.0107	1.94	1/982	1/7748
SNV	Breast	DAPP1_R22T_2	HLA-C05:01	STSDGEAEL	0.9996	0.9373	0.1599	328.74	0.3504	5.3	1/982	1/7748
SNV	Breast	DAPP1_R22T_1	HLA-C05:01	TSDGEAELL	0.9999	0.94	0.0147	52.32	0.1731	5.3	1/982	1/7748
SNV	Breast	DCAF11_G327A_2	HLA-C05:01	GADDAICKV	0.9998	0.9787	0.0311	12.9	0.1028	26.08	1/982	1/7748
SNV	Breast	DCN_I304M_7	HLA-C05:01	YLHNNNMSV	0.8381	0.8591	0.3719	36.3	0.1509	60.84	1/982	1/7748
SNV	Breast	DCN_I304M_9	HLA-C12:02	VVYLHNNNM	0.6759	0.9771	0.3927	113.31	0.1956	60.84	1/982	1/7748
SNV	Breast	DCN_I304M_7	HLA-C12:02	YLHNNNMSV	0.8413	0.9711	0.4507	56.93	0.1193	60.84	1/982	1/7748
SNV	Breast	DCUN1D1_F192L_1	HLA-C05:01	LLDLWNKFL	0.9995	0.981	0.0781	28.21	0.1391	13.85	1/982	1/7748
SNV	Breast	DECR1_F43L_8	HLA-B18:01	TEALQSKLF	0.994	0.9705	0.0709	35.01	0.1047	20.36	1/982	1/7748
SNV	Breast	DENND1A_M427I_6	HLA-C12:02	KANPAIKTV	0.7769	0.9825	0.0809	60.54	0.1234	7.25	1/982	1/7748
SNV	Breast	DFFA_S142L_2	HLA-C05:01	LLEEDLQML	0.9999	0.9328	0.1154	18.91	0.1207	11.12	1/982	1/7748
SNV	Breast	DGKE_G20W_4	HLA-C05:01	FADWHLIL	1	0.9945	0.032	93.56	0.2155	7.29	1/982	1/7748
SNV	Breast	DGKE_G20W_4	HLA-C05:01	FADWHLILW	0.9884	0.9949	0.294	277.75	0.3291	7.29	1/982	1/7748
SNV	Breast	DHX40_E666Q_8	HLA-B18:01	HEQETKLQW	0.9887	0.9374	0.0749	39.73	0.1097	57.04	1/982	1/7748
SNV	Breast	DHX40_P384L_9	HLA-C05:01	GLDILEVVL	0.9999	0.9699	0.1416	17.68	0.1175	57.04	1/982	1/7748
SNV	Breast	DIDO1_L837F_9	HLA-C05:01	LLDVFSSMF	0.9986	0.9455	0.1355	9.57	0.0866	17.53	1/982	1/7748
SNV	Breast	DIP2B_D1568H_7	HLA-C05:01	FLADQLHPI	0.9976	0.9876	0.367	12.13	0.0999	18.21	1/982	1/7748
SNV	Breast	DIP2B_D1568H_6	HLA-C05:01	LADQLHPIY	0.9918	0.9004	0.4043	485.88	0.3998	18.21	1/982	1/7748
SNV	Breast	DIP2B_D1568H_6	HLA-C05:01	LADQLHPIYV	0.9999	0.9671	0.1623	227.12	0.3036	18.21	1/982	1/7748
SNV	Breast	DIP2B_D1568H_7	HLA-C12:02	FLADQLHPI	0.9772	0.9881	0.3114	83.25	0.161	18.21	1/982	1/7748
SNV	Breast	DIP2B_D1568H_3	HLA-C12:02	QLHPIYVAY	0.8064	0.9749	0.2439	132.19	0.2152	18.21	1/982	1/7748
SNV	Breast	DIP2B_D813Y_7	HLA-C12:02	FVVGKMYGL	0.9624	0.9555	0.7621	211.74	0.2931	18.21	1/982	1/7748
SNV	Breast	DIP2C_D1435H_1	HLA-C12:02	HALYVVGAL	0.9389	0.9458	0.2483	398.65	0.4223	6.96	1/982	1/7748
SNV	Breast	DIS3L_S434L_8	HLA-C05:01	ILVENSILV	0.9907	0.9267	0.7161	198.57	0.2879	14.99	1/982	1/7748
SNV	Breast	DIS3L_S434L_7	HLA-C05:01	LVENSILVI	0.9998	0.8881	0.4043	99.95	0.2209	14.99	1/982	1/7748
SNV	Breast	DMD_E1186Q_9	HLA-B18:01	EEYLERDFQY	0.994	0.6813	0.0892	8.69	0.0581	12.01	1/982	1/7748
SNV	Breast	DMD_E1186Q_2	HLA-C12:02	FQYKTPDEL	0.9846	0.9624	0.3865	49.26	0.1096	12.01	1/982	1/7748
SNV	Breast	DMXL1_H1316Y_3	HLA-B52:01	AAYVLSPTL	0.9568	0.9473	0.1255	167.23	0.0233	6.4	1/982	1/7748
SNV	Breast	DMXL1_H1316Y_3	HLA-C12:02	AAYVLSPTL	0.9911	0.959	0.1923	54.95	0.117	6.4	1/982	1/7748
SNV	Breast	DMXL1_S2149Y_9	HLA-C12:02	GSHGGGLAY	0.7759	0.9877	0.0727	62.91	0.1269	6.4	1/982	1/7748
SNV	Breast	DNAH1_S429L_7	HLA-C12:02	RMRKGPLVL	0.8116	0.9723	1.2724	353.87	0.3975	1.31	1/982	1/7748
SNV	Breast	DNAH1_S429L_1	HLA-C12:02	LVLEHLSSL	0.9981	0.9781	0.0973	44.16	0.1023	1.31	1/982	1/7748
SNV	Breast	DNAJA1_E323K_9	HLA-B18:01	YEKGRLIIKF	0.8995	0.6672	0.5962	152.79	0.1832	321.42	1/982	1/7748
SNV	Breast	DNAJB5_D200N_5	HLA-C05:01	RLNPNGRTV	0.9939	0.9657	0.6482	470.75	0.3958	4.06	1/982	1/7748
SNV	Breast	DNMBP_E881K_8	HLA-B18:01	DEAIALLKI	0.9753	0.6606	0.172	260.5	0.2164	13.95	1/982	1/7748
SNV	Breast	DNMBP_E881K_8	HLA-B18:01	DEAIALLKIY	0.9971	0.6207	0.2617	26.9	0.0938	13.95	1/982	1/7748
SNV	Breast	DOCK2_D675Y_9	HLA-B18:01	DEYDILVFY	0.998	0.8683	0.0074	1.1	0.0011	1.3	1/982	1/7748
SNV	Breast	DOCK2_D675Y_10	HLA-B18:01	SDEYDILVFY	0.6978	0.9349	1.1389	10.15	0.0629	1.3	1/982	1/7748
SNV	Breast	DOCK2_D675Y_9	HLA-B18:01	DEYDILVFYA	0.9426	0.8843	0.9055	36.51	0.1064	1.3	1/982	1/7748
SNV	Breast	DOCK4_Q558E_7	HLA-C05:01	FLGNNNEAM	0.9792	0.9936	0.346	492.69	0.402	3.85	1/982	1/7748
SNV	Breast	DOCK7_D484Y_5	HLA-C05:01	LSDEYLYKF	0.9997	0.8947	0.1043	7.81	0.076	7.81	1/982	1/7748
SNV	Breast	DOCK9_S593L_7	HLA-C05:01	TIDNVSLDF	0.9989	0.8356	0.088	12.93	0.1029	11.26	1/982	1/7748
SNV	Breast	DOCK9_S593L_3	HLA-C05:01	VSLDFPNYV	0.9877	0.9451	0.8383	123.85	0.2384	11.26	1/982	1/7748
SNV	Breast	DPH3_E11K_6	HLA-B18:01	DEVEIKDF	0.9995	0.9225	0.0717	202.42	0.1992	14.88	1/982	1/7748
SNV	Breast	DPH3_E11K_4	HLA-B18:01	VEIKDFQY	0.9942	0.8616	0.0994	66.06	0.1311	14.88	1/982	1/7748
SNV	Breast	DPH3_E11K_6	HLA-B18:01	DEVEIKDFQY	0.9977	0.882	0.0689	3.98	0.0305	14.88	1/982	1/7748
SNV	Breast	DPYSL3_G68E_5	HLA-C12:02	MVIPEGIDV	0.6861	0.9855	0.5414	459.98	0.4522	28.61	1/982	1/7748
SNV	Breast	DSCR3_Q70H_1	HLA-C12:02	HIINSTIEM	0.9992	0.9513	0.2074	19.35	0.0524	7.82	1/982	1/7748
SNV	Breast	DSE_L83F_6	HLA-C05:01	MLSSPFEYL	0.9966	0.9319	0.5364	198.51	0.2878	3.29	1/982	1/7748
SNV	Breast	DUOX1_F1095L_7	HLA-C12:02	TAASISLMF	0.9186	0.9668	0.1736	119.31	0.2016	1.13	1/982	1/7748
SNV	Breast	DUOX1_F1095L_5	HLA-C12:02	ASISLMFSY	0.7201	0.9666	0.6188	409.63	0.428	1.13	1/982	1/7748
SNV	Breast	DXO_R24S_4	HLA-C05:01	KLPSPAPSL	0.9202	0.9715	0.3719	132.79	0.244	4.29	1/982	1/7748
SNV	Breast	DYNC1LI1_S286L_9	HLA-C12:02	YGAALIYTL	0.9061	0.9696	0.9485	127.26	0.2101	18.78	1/982	1/7748
SNV	Breast	DYRK1A_F542L_2	HLA-C12:02	HLTAAVQAM	0.8352	0.9904	0.4696	275.1	0.3464	16.57	1/982	1/7748
SNV	Breast	EFCAB13_L857F_8	HLA-C05:01	VSDLKTLFM	0.9999	0.9247	0.0291	4.39	0.0506	1.16	1/982	1/7748
SNV	Breast	EFCAB13_L857F_1	HLA-C05:01	FMDKDLHTA	0.9999	0.9424	0.1501	15.19	0.1104	1.16	1/982	1/7748
SNV	Breast	EFTUD2_E701D_6	HLA-C05:01	LAEDIDNEV	0.9996	0.9725	0.1599	161.27	0.2639	13.62	1/982	1/7748
SNV	Breast	EIF3K_E135Q_2	HLA-C05:01	FQDSVRKFI	0.9991	0.9623	0.1533	133.36	0.2444	50.52	1/982	1/7748
SNV	Breast	EIF3L_Q46E_4	HLA-C05:01	QTYEVIPEV	0.9918	0.963	1.5343	491.33	0.4016	77.77	1/982	1/7748
SNV	Breast	EIF3L_Q46E_4	HLA-C12:02	QTYEVIPEV	0.6766	0.966	0.2789	146.65	0.2289	77.77	1/982	1/7748
SNV	Breast	EIF4ENIF1_E218K_5	HLA-C05:01	YTEEKPEWF	0.9977	0.959	0.1445	82.41	0.2052	15.12	1/982	1/7748
SNV	Breast	ELF4_L483V_2	HLA-C05:01	IVSGLPQLL	0.9992	0.9196	0.325	323.67	0.3484	14.2	1/982	1/7748
SNV	Breast	ELF4_L483V_2	HLA-C12:02	IVSGLPQLL	0.8669	0.92	0.1459	268.39	0.3414	14.2	1/982	1/7748
SNV	Breast	ELOVL4_E7Q_9	HLA-C05:01	LLDSQPGSV	0.9999	0.9921	0.0334	18.48	0.1196	1.75	1/982	1/7748
SNV	Breast	ELOVL4_E7Q_9	HLA-C05:01	LLDSQPGSVL	1	0.9781	0.032	50.05	0.1704	1.75	1/982	1/7748
SNV	Breast	EMC2_G153A_9	HLA-B18:01	NEYLEQFVA	0.843	0.8169	0.2804	205.37	0.2001	19.27	1/982	1/7748
SNV	Breast	EMC2_G153A_2	HLA-C05:01	VADQEAWHEL	1	0.9667	0.049	192.31	0.2842	19.27	1/982	1/7748
SNV	Breast	ENPEP_F161L_1	HLA-B18:01	LEYKKQEY	0.9969	0.8566	0.1181	272.26	0.2194	1.27	1/982	1/7748
SNV	Breast	ENTPD5_D395H_3	HLA-C05:01	FAHSTVLQL	0.8846	0.969	0.0545	230.13	0.3053	5.32	1/982	1/7748
SNV	Breast	ENTPD5_D395H_5	HLA-C12:02	FGFAHSTVL	0.9951	0.9901	0.1024	13.45	0.0389	5.32	1/982	1/7748
SNV	Breast	ENTPD5_D395H_3	HLA-C12:02	FAHSTVLQL	0.9989	0.9795	0.0001	4.85	0.0124	5.32	1/982	1/7748
SNV	Breast	ENTPD7_L352V_9	HLA-C05:01	GLSPDNPFV	0.9805	0.9826	1.7258	289.53	0.3343	11.39	1/982	1/7748
SNV	Breast	ENTPD7_L352V_2	HLA-C05:01	FVDPCLPVGL	0.9999	0.9778	0.0334	4.68	0.0537	11.39	1/982	1/7748
SNV	Breast	EPN3_S351L_10	HLA-C05:01	SADPWSPIPL	0.9999	0.927	0.0278	66.13	0.1891	92.78	1/982	2/7748
SNV	Breast	EPYC_E184K_5	HLA-B18:01	SEIDKDAF	0.9958	0.9228	0.197	244.7	0.2121	11.39	1/982	1/7748
SNV	Breast	ERAP1_Q698E_2	HLA-B52:01	TEFKAFLI	0.9495	0.8683	0.0936	268.25	0.0385	15.25	1/982	1/7748
SNV	Breast	ERAP1_Q698E_4	HLA-B18:01	VETEFKAF	0.9988	0.9799	0.1059	447.08	0.2537	15.25	1/982	1/7748
SNV	Breast	ERAP1_Q698E_6	HLA-B18:01	NEVETEFKAF	0.9947	0.9686	0.0539	9.55	0.0614	15.25	1/982	1/7748
SNV	Breast	ERAP2_E576Q_5	HLA-B18:01	QEDPQWRAL	0.9082	0.9783	0.2395	398.86	0.2456	1.66	1/982	1/7748
SNV	Breast	ERBB3_L1027M_3	HLA-C12:02	TTMGSALSL	0.9799	0.986	0.1134	108.75	0.191	83.01	1/982	1/7748
SNV	Breast	EXO1_S587C_8	HLA-C05:01	FTDEESYCF	0.9985	0.9222	0.1064	5.51	0.0614	11.03	1/982	1/7748
SNV	Breast	EXOC2_L288V_7	HLA-C05:01	FLFNLPVNI	0.8019	0.9802	0.7219	133.09	0.2442	19.66	1/982	1/7748
SNV	Breast	EXOC2_L288V_7	HLA-C12:02	FLFNLPVNI	0.7528	0.9794	0.6683	100.53	0.1821	19.66	1/982	1/7748
SNV	Breast	EXOC4_S21L_6	HLA-C05:01	KSKDPLGLLI	0.9984	0.8694	1.4729	171.65	0.2711	14.34	1/982	1/7748
SNV	Breast	EXOC6_F718L_9	HLA-C05:01	QGDTLQLAL	0.9999	0.9873	0.1775	440.76	0.3874	6.35	1/982	1/7748
SNV	Breast	FAM208A_S1124F_9	HLA-B18:01	LERHVIPVF	0.9895	0.8881	0.0309	4.37	0.0328	26.8	1/982	1/7748
SNV	Breast	FAM221A_D228Y_9	HLA-B18:01	LESPITAVY	0.998	0.8751	0.0027	1.41	0.0039	1.47	1/982	1/7748
SNV	Breast	FAM227B_E28Q_5	HLA-C12:02	KSIEQFLKF	0.8911	0.9762	0.2154	145.64	0.228	1.67	1/982	1/7748
SNV	Breast	FAM91A1_L421V_6	HLA-C05:01	SLDSFVIEL	0.9999	0.8909	0.0022	1.31	0.0102	26.12	1/982	1/7748
SNV	Breast	FARSB_L62I_6	HLA-C05:01	ASDVVIYKI	0.9999	0.9023	0.0819	16.34	0.1138	31.24	1/982	1/7748
SNV	Breast	FASN_L1975F_9	HLA-C12:02	GVFNLAVVF	0.6003	0.9865	0.9979	228.5	0.3087	306.91	1/982	1/7748
SNV	Breast	FAT2_E600Q_2	HLA-C12:02	YQIVSGNEL	0.9809	0.9761	0.6755	85.8	0.1644	6.72	1/982	1/7748
SNV	Breast	FAT2_R527T_8	HLA-B52:01	MDYELMKTI	0.9091	0.8239	0.0198	10.56	0.0057	6.72	1/982	1/7748
SNV	Breast	FAT2_R527T_6	HLA-B18:01	YELMKTIY	0.9991	0.7141	0.184	20.13	0.0831	6.72	1/982	1/7748
SNV	Breast	FAT2_R527T_6	HLA-B18:01	YELMKTIYTF	0.991	0.703	0.437	33.78	0.1033	6.72	1/982	1/7748
SNV	Breast	FCGBP_M2537I_4	HLA-C05:01	GVDIKLPVV	0.9999	0.9613	0.1651	38.08	0.1538	1.58	1/982	1/7748
SNV	Breast	FIGNL1_S504F_5	HLA-B18:01	DEIDFLLSQ	0.8285	0.9063	0.154	16.07	0.0757	6.45	1/982	1/7748
SNV	Breast	FIGNL1_S504F_7	HLA-C05:01	FIDEIDFL	1	0.9199	0.0726	10.03	0.0899	6.45	1/982	1/7748
SNV	Breast	FIGNL1_S504F_7	HLA-C05:01	FIDEIDFLL	0.9997	0.9293	0.0138	1.17	0.006	6.45	1/982	1/7748
SNV	Breast	FKBP8_I248M_9	HLA-C12:02	AANSYDLAM	0.9496	0.9609	0.1325	55.54	0.1177	65.46	1/982	1/7748
SNV	Breast	FLT1_I532M_9	HLA-C05:01	VADSRISGM	0.9999	0.9598	0.0088	15.74	0.1121	6.31	1/982	1/7748
SNV	Breast	FRYL_I274M_3	HLA-C05:01	ILMPVAAAV	0.9628	0.9959	1.4729	120.06	0.2358	10.93	1/982	1/7748
SNV	Breast	FRYL_I274M_3	HLA-C12:02	ILMPVAAAV	0.9622	0.9923	0.5212	247.83	0.3252	10.93	1/982	1/7748
SNV	Breast	FRYL_Q2542E_8	HLA-C05:01	ITTEEVLEI	0.9995	0.9622	0.4176	332.19	0.3517	10.93	1/982	1/7748
SNV	Breast	FUBP1_E617Q_7	HLA-C12:02	YSAAWAQYY	0.7857	0.9374	0.0276	21.43	0.0576	35.52	1/982	1/7748
SNV	Breast	FUCA1_L440V_8	HLA-C05:01	STDPDKGVF	0.9997	0.709	0.0755	5.29	0.0594	21.31	1/982	1/7748
SNV	Breast	FUCA1_L440V_8	HLA-C05:01	STDPDKGVFI	0.9999	0.704	0.032	100.09	0.221	21.31	1/982	1/7748
SNV	Breast	GALNT6_E221Q_8	HLA-C05:01	LVDDASTQEHL	1	0.9643	0.0841	270.38	0.3257	164.09	1/982	1/7748
SNV	Breast	GANAB_V754L_9	HLA-C05:01	YLLGDALLL	0.9725	0.9747	0.8064	14.47	0.1081	209.74	1/982	1/7748
SNV	Breast	GCC2_L704F_1	HLA-C12:02	FSRDLEVFL	0.9789	0.9699	0.1164	463.45	0.4537	9.18	1/982	1/7748
SNV	Breast	GCNT4_E127K_1	HLA-B18:01	KEKSFPIAY	0.9738	0.9324	0.0266	7.52	0.0507	3.17	1/982	1/7748
SNV	Breast	GEMIN4_P694L_2	HLA-C12:02	SLFPLLFSL	0.7981	0.9824	0.4196	454.17	0.4495	7.2	1/982	1/7748
SNV	Breast	GEN1_E442Q_3	HLA-B18:01	EEQSLFEAAY	0.9813	0.8626	0.0574	30.01	0.0984	3.19	1/982	1/7748
SNV	Breast	GEN1_E442Q_6	HLA-C12:02	LTIEEQSLF	0.9231	0.9881	0.292	410.01	0.4282	3.19	1/982	1/7748
SNV	Breast	GFOD2_E40K_9	HLA-A03:01	ALWGKTEEK	0.9978	0.5558	0.104	7.61	0.0783	7.53	1/982	1/7748
SNV	Breast	GLI3_E1071D_3	HLA-C05:01	ITDNVTLESL	1	0.9646	0.0527	17.91	0.1181	16.82	1/982	1/7748
SNV	Breast	GLYR1_E208K_11	HLA-A03:01	AAFKWQPTASK	0.9984	0.5686	0.6706	417.26	0.475	23.07	1/982	1/7748
SNV	Breast	GMPR2_E272Q_6	HLA-C12:02	YGMSSQMAM	0.9579	0.9885	0.2843	24.43	0.0688	22.4	1/982	1/7748
SNV	Breast	GMPS_F140L_9	HLA-C05:01	SVDNTCSLL	0.9997	0.9338	0.0311	11.66	0.0978	40.71	1/982	1/7748
SNV	Breast	GNAS_P322A_6	HLA-C05:01	GVDDTAVNM	0.9998	0.9308	0.038	3.6	0.0448	399.85	1/982	1/7748
SNV	Breast	GNAS_P322A_7	HLA-C05:01	AGVDDTAVNM	0.9992	0.9639	1.0919	361.59	0.3624	399.85	1/982	1/7748
SNV	Breast	GNAS_P322A_1	HLA-C05:01	AVNMDSPPIAL	1	0.9744	1.0994	237.47	0.3093	399.85	1/982	1/7748
SNV	Breast	GOLGA5_L361V_9	HLA-A03:01	RLHEADATVK	0.9991	0.5349	0.2905	16.08	0.1225	45.41	1/982	1/7748
SNV	Breast	GOLGB1_H2518Y_9	HLA-B18:01	EEIRGLRSY	0.9994	0.5837	0.0154	1.47	0.0044	75.27	1/982	1/7748
SNV	Breast	GON4L_E633Q_2	HLA-C05:01	FQEPLANLL	0.9998	0.9844	0.1271	25.42	0.1343	5.71	1/982	1/7748
SNV	Breast	GPATCH1_S58T_2	HLA-C05:01	FTAGYFNTV	0.9962	0.991	0.6274	97.79	0.2191	3.91	1/982	1/7748
SNV	Breast	GPATCH1_S58T_6	HLA-C12:02	FSGGFTAGY	0.5612	0.9844	0.0524	281.73	0.3512	3.91	1/982	1/7748
SNV	Breast	GPATCH1_S58T_2	HLA-C12:02	FTAGYFNTV	0.7362	0.9911	0.0269	56.34	0.1186	3.91	1/982	1/7748
SNV	Breast	GPR155_E164Q_7	HLA-C12:02	YQTTYPQYL	0.6385	0.9646	1.5423	184.64	0.2647	1.58	1/982	1/7748
SNV	Breast	GPRC5B_M9I_2	HLA-C12:02	RAHQVLTFL	0.6465	0.9735	0.0269	99.93	0.1815	5.47	1/982	1/7748
SNV	Breast	GPSM2_Q372E_2	HLA-B18:01	LEMVLGLSY	0.9987	0.7645	0.0049	2.68	0.0135	6.9	1/982	1/7748
SNV	Breast	GPSM2_Q372E_8	HLA-C05:01	RLNLSDLEM	0.9907	0.9351	1.6858	493.89	0.4024	6.9	1/982	1/7748
SNV	Breast	GPSM2_Q372E_6	HLA-C05:01	NLSDLEMVL	0.9989	0.9402	0.4235	455.36	0.3916	6.9	1/982	1/7748
SNV	Breast	GRIK3_G373E_2	HLA-B18:01	EELTGRIVF	0.9967	0.696	0.0266	1.45	0.0043	2.26	1/982	1/7748
SNV	Breast	GRIK3_G373E_3	HLA-B18:01	WEELTGRIVF	0.9777	0.7258	0.2491	240.49	0.2109	2.26	1/982	1/7748
SNV	Breast	GUF1_D527N_7	HLA-C12:02	IVVDFYNSL	0.9945	0.9277	0.1356	28.88	0.0796	30.35	1/982	1/7748
SNV	Breast	GUK1_I118M_7	HLA-C05:01	ATDLRPMYI	0.9999	0.9454	0.049	2.87	0.0383	120.91	1/982	1/7748
SNV	Breast	GZF1_E628Q_3	HLA-B18:01	DEQYVSSKL	0.9928	0.7347	0.137	52.73	0.1211	12.02	1/982	1/7748
SNV	Breast	HACE1_K290N_7	HLA-B18:01	SESQYLNIL	0.8417	0.8532	0.184	314.2	0.2293	2.56	1/982	1/7748
SNV	Breast	HAUS6_Q327E_2	HLA-B18:01	DEARLTVDL	0.9567	0.7847	0.1898	242.88	0.2116	6.71	1/982	1/7748
SNV	Breast	HAUS6_Q327E_4	HLA-C05:01	QADEARLTV	1	0.9745	0.0209	3.71	0.0457	6.71	1/982	1/7748
SNV	Breast	HDX_E336Q_3	HLA-C12:02	RAQNQSTTL	0.8613	0.962	0.2239	229.82	0.3099	1.57	1/982	1/7748
SNV	Breast	HECTD4_I356M_9	HLA-C12:02	LAALTGSTM	0.9891	0.9685	0.036	40.91	0.0978	8.04	1/982	1/7748
SNV	Breast	HECW2_D464N_1	HLA-C05:01	NSDEEDHEF	0.9996	0.9023	0.0726	187.05	0.281	2.49	1/982	1/7748
SNV	Breast	HECW2_E135K_4	HLA-B18:01	MEPKIKICF	0.9724	0.8559	0.0935	47.39	0.1168	2.49	1/982	1/7748
SNV	Breast	HELZ2_R2262S_5	HLA-A03:01	RVGSSKLLRK	0.998	0.5117	0.166	6.07	0.0677	4.47	1/982	1/7748
SNV	Breast	HEMK1_H70Y_7	HLA-B18:01	SEYIVAYVL	0.9454	0.9747	0.0481	8.86	0.0591	1.75	1/982	1/7748
SNV	Breast	HEMK1_H70Y_10	HLA-B18:01	RESSEYIVAY	0.8281	0.8803	0.1249	82.1	0.1416	1.75	1/982	1/7748
SNV	Breast	HERC1_R1097K_1	HLA-C05:01	KLLPAADLL	0.6957	0.9745	1.5898	266.88	0.324	8.06	1/982	1/7748
SNV	Breast	HERC2_S2928L_9	HLA-C12:02	LAAVPFLAL	0.9946	0.9727	0.0398	144.09	0.2266	6.87	1/982	1/7748
SNV	Breast	HIST2H2BF_I70M_5	HLA-C05:01	FVNDMFERI	0.9991	0.9591	0.6482	21.72	0.1271	7.51	1/982	1/7748
SNV	Breast	HIST2H2BF_I70M_5	HLA-C12:02	FVNDMFERI	0.9395	0.9754	0.6188	248.18	0.3255	7.51	1/982	1/7748
SNV	Breast	HIST3H2A_E57Q_7	HLA-C05:01	YLAAVLQYL	0.9783	0.9906	0.8991	7.26	0.0735	64.19	1/982	1/7748
SNV	Breast	HIST3H2A_E57Q_7	HLA-C12:02	YLAAVLQYL	0.9361	0.9876	0.5545	44.82	0.1033	64.19	1/982	1/7748
SNV	Breast	HIVEP2_D280N_1	HLA-C05:01	NTDEESSLF	0.9994	0.9255	0.061	8.12	0.0774	8.48	1/982	1/7748
SNV	Breast	HMCN1_F623L_9	HLA-C12:02	TVMPKNQSL	0.9904	0.9358	0.1772	30.18	0.0819	8.12	1/982	1/7748
SNV	Breast	HMCN1_P1639A_8	HLA-C05:01	HVDVYVPAM	0.9999	0.8596	0.0568	6.97	0.072	8.12	1/982	1/7748
SNV	Breast	HNRNPH2_P144L_9	HLA-C05:01	IVPNGMTLL	0.6169	0.8759	0.4779	304.71	0.3408	171.53	1/982	1/7748
SNV	Breast	HOXB2_S36L_9	HLA-C05:01	VLETFQTSL	0.9998	0.9449	0.1799	75.04	0.1979	4.14	1/982	1/7748
SNV	Breast	HOXB5_I238M_5	HLA-B18:01	SERQMKIWF	0.9216	0.8513	0.1502	251.55	0.214	1.71	1/982	1/7748
SNV	Breast	HS1BP3_K33N_1	HLA-C12:02	NMMSGHVEY	0.8255	0.9911	0.438	248.96	0.3261	5.51	1/982	1/7748
SNV	Breast	HS3ST3B1_F326L_6	HLA-C05:01	ITDKHLYF	1	0.906	0.1109	374.37	0.3668	1.78	1/982	1/7748
SNV	Breast	HS3ST3B1_F326L_7	HLA-C12:02	IITDKHLYF	0.9639	0.9721	0.5357	231.73	0.3116	1.78	1/982	1/7748
SNV	Breast	HSBP1_K50N_3	HLA-B18:01	LENNIADLM	0.896	0.8939	0.2824	129.9	0.1734	33	1/982	1/7748
SNV	Breast	HSBP1_K50N_7	HLA-C05:01	RIDDLENNI	0.9996	0.9391	0.061	2.77	0.0369	33	1/982	1/7748
SNV	Breast	HSP90AA1_Q23E_2	HLA-B18:01	FEAEIAQLM	0.9963	0.9552	0.0161	2.09	0.0085	1049.9	1/982	1/7748
SNV	Breast	HSPA4_D90Y_9	HLA-B18:01	AEKSNLAYY	0.9758	0.8529	0.1075	82.88	0.1421	49.2	1/982	1/7748
SNV	Breast	HSPA4_D90Y_1	HLA-C12:02	YIVQLPTGL	0.9797	0.976	0.2789	54.86	0.1168	49.2	1/982	1/7748
SNV	Breast	HUWE1_K1799N_5	HLA-C05:01	FAELNSTRM	0.9998	0.9297	0.1294	44.3	0.163	35.12	1/982	1/7748
SNV	Breast	HUWE1_K1799N_5	HLA-C12:02	FAELNSTRM	0.9238	0.9735	0.2876	314.16	0.3733	35.12	1/982	1/7748
SNV	Breast	ICK_E205K_11	HLA-A03:01	TLRPLFPGASK	0.9994	0.5452	0.573	90.14	0.2718	8.99	1/982	1/7748
SNV	Breast	IDH1_K81N_3	HLA-B18:01	DENRVEEF	0.9998	0.9523	0.0808	211.37	0.202	56.07	1/982	1/7748
SNV	Breast	IDH1_R338T_7	HLA-C12:02	SIFAWTTGL	0.9638	0.9904	0.5079	205.63	0.287	56.07	1/982	1/7748
SNV	Breast	IFIT1_E471D_6	HLA-C12:02	LAADFDNSV	0.8083	0.9771	0.1388	481.26	0.4616	6.74	1/982	1/7748
SNV	Breast	IFT52_E256Q_5	HLA-B18:01	AEDPQISDY	0.664	0.8366	0.1856	197.89	0.1979	24.78	1/982	1/7748
SNV	Breast	IFT52_E256Q_8	HLA-C05:01	QIDAEDPQI	0.9998	0.9891	0.1085	114.17	0.2317	24.78	1/982	1/7748
SNV	Breast	IFT81_S164C_7	HLA-B18:01	YEQLKICGF	0.9933	0.5343	0.0892	368.67	0.2402	2.41	1/982	1/7748
SNV	Breast	IFT88_L340F_6	HLA-B52:01	KAFQKFITV	0.8136	0.9553	0.0256	33.51	0.0084	3.09	1/982	1/7748
SNV	Breast	IFT88_L340F_6	HLA-C12:02	KAFQKFITV	0.7964	0.9625	0.0483	60.05	0.1229	3.09	1/982	1/7748
SNV	Breast	IKBKE_E99D_3	HLA-C05:01	VLDSPENAF	0.9996	0.9366	0.022	1.86	0.0218	4.14	1/982	1/7748
SNV	Breast	IL15_F147Y_8	HLA-B18:01	EEKNIKEY	0.9996	0.9253	0.0749	422.19	0.2495	1.17	1/982	1/7748
SNV	Breast	IL15_F147Y_9	HLA-B18:01	LEEKNIKEY	0.9974	0.9534	0.1025	41.31	0.1113	1.17	1/982	1/7748
SNV	Breast	IL15_F147Y_11	HLA-B18:01	EELEEKNIKEY	0.9956	0.9112	0.1608	213.79	0.2028	1.17	1/982	1/7748
SNV	Breast	IL15_F147Y_1	HLA-C05:01	YLQSFVHIV	0.9791	0.9562	0.8139	158.62	0.262	1.17	1/982	1/7748
SNV	Breast	IL24_F121L_9	HLA-B18:01	LEFYLKTVL	0.9548	0.8557	0.1471	63.02	0.1289	1.11	1/982	1/7748
SNV	Breast	INO80D_D281Y_8	HLA-C05:01	TVDPPRTYRI	0.9995	0.976	0.2238	52.74	0.1735	4.6	1/982	1/7748
SNV	Breast	INTS1_F515L_8	HLA-B18:01	HEINFQAL	0.9959	0.9072	0.0774	147.12	0.181	20.48	1/982	1/7748
SNV	Breast	IPO13_G14E_2	HLA-B18:01	AEAAPALDF	0.8813	0.9274	0.1196	160.3	0.1859	14.69	1/982	1/7748
SNV	Breast	IQCA1_E639K_5	HLA-B18:01	IEDTKKTFY	0.9952	0.8804	0.1787	316.48	0.2297	3.15	1/982	1/7748
SNV	Breast	IQSEC2_D1259H_5	HLA-A03:01	GVLPHGQSK	0.9978	0.5986	0.2314	5.23	0.0549	5.77	1/982	1/7748
SNV	Breast	IRAK1BP1_R10P_7	HLA-C05:01	KTPPTPVFV	0.9464	0.9463	0.3299	163.31	0.2653	2.59	1/982	1/7748
SNV	Breast	IREB2_L883F_9	HLA-B18:01	YEKIHKDHF	0.9866	0.8277	0.0717	121.45	0.1679	11.74	1/982	1/7748
SNV	Breast	IRS1_I95M_9	HLA-C12:02	YTRDEHFAM	0.9887	0.9468	0.0621	9.3	0.0274	13.36	1/982	1/7748
SNV	Breast	ITGA6_E312K_6	HLA-C12:02	IVSKDKITF	0.9554	0.936	0.3011	467.83	0.4557	38.83	1/982	1/7748
SNV	Breast	ITPR2_H1295R_10	HLA-B18:01	NEISERVVQRF	0.9996	0.5855	0.1624	391.81	0.2444	7.05	1/982	1/7748
SNV	Breast	ITPR3_E19Q_3	HLA-C12:02	YAQGSVNGF	0.9937	0.9768	0.0184	19.67	0.0532	19.23	1/982	1/7748
SNV	Breast	KANK1_S752L_7	HLA-C12:02	SGFDRPLAV	0.6024	0.9817	0.2359	57.73	0.1202	2.85	1/982	1/7748
SNV	Breast	KCNK1_E207Q_3	HLA-C05:01	VLQDDWNFL	0.9958	0.9801	0.5301	197.56	0.2873	32.92	1/982	1/7748
SNV	Breast	KCNMA1_A1111V_7	HLA-C05:01	LLDGPFVDL	0.9998	0.988	0.0081	2.37	0.0316	8.06	1/982	1/7748
SNV	Breast	KDELC1_D274N_6	HLA-C05:01	TYDLTNSVL	0.999	0.8654	0.3505	336.87	0.3535	5	1/982	1/7748
SNV	Breast	KDELC1_D274N_3	HLA-C12:02	LTNSVLETM	0.9856	0.979	0.0809	215.15	0.2964	5	1/982	1/7748
SNV	Breast	KDELC1_L110V_7	HLA-C05:01	YASYKNVKV	0.9977	0.8789	0.6094	494.89	0.4028	5	1/982	1/7748
SNV	Breast	KDELC1_L110V_7	HLA-C12:02	YASYKNVKV	0.6119	0.9621	0.2739	490.27	0.4655	5	1/982	1/7748
SNV	Breast	KDM3B_R338T_1	HLA-C12:02	TAKQPPSTF	0.975	0.9684	0.0848	86.99	0.1659	28.02	1/982	1/7748
SNV	Breast	KDR_P992A_5	HLA-B18:01	EEEAAEDLY	0.7784	0.9693	0.1156	466.07	0.2567	8.56	1/982	1/7748
SNV	Breast	KERA_D251H_1	HLA-B18:01	HEGLPSRGF	0.9827	0.9204	0.1131	201.69	0.199	1.42	1/982	1/7748
SNV	Breast	KIAA0391_K392N_4	HLA-B18:01	QELNRFENF	0.9974	0.8732	0.0574	15.58	0.0747	1.17	1/982	1/7748
SNV	Breast	KIAA0430_E1199Q_4	HLA-C12:02	IVRQFSQAY	0.7699	0.962	0.3059	134.49	0.2175	12.2	1/982	1/7748
SNV	Breast	KIAA1033_S232L_7	HLA-C12:02	SVHHNPLKF	0.6397	0.9362	0.0306	91.73	0.1719	17.29	1/982	1/7748
SNV	Breast	KIAA1217_G1130A_2	HLA-C05:01	EADKIMAEL	1	0.9267	0.0861	37.13	0.1523	38.07	1/982	1/7748
SNV	Breast	KIAA1429_L1202F_4	HLA-C05:01	VLDFIVEDL	0.9997	0.9309	0.0454	10.47	0.0922	7.75	1/982	1/7748
SNV	Breast	KIAA1524_E725K_4	HLA-B18:01	EEHKILTKSY	0.989	0.8065	0.0709	20.15	0.0831	8.3	1/982	1/7748
SNV	Breast	KIAA1614_H1058Y_9	HLA-C12:02	SLHPVSPSY	0.8356	0.976	0.0848	27.72	0.0771	1.04	1/982	1/7748
SNV	Breast	KIAA1614_H1058Y_1	HLA-C12:02	YQRRKAASF	0.8796	0.9617	1.7902	284.81	0.3534	1.04	1/982	1/7748
SNV	Breast	KIAA2026_L2055F_9	HLA-C12:02	LVSPEGAIF	0.8895	0.9869	0.1549	111.4	0.1937	12.3	1/982	1/7748
SNV	Breast	KIF21A_S1298L_9	HLA-C12:02	LTVSQGNTL	0.8857	0.9578	0.0761	318	0.3758	9.64	1/982	1/7748
SNV	Breast	KLC2_R453H_7	HLA-C12:02	TVNTTLHSL	0.9534	0.974	0.494	174.64	0.2532	13.01	1/982	1/7748
SNV	Breast	KLHDC7B_E58K_9	HLA-A03:01	GTGTGGLVK	0.9554	0.6008	0.5045	151.98	0.3274	20.19	1/982	1/7748
SNV	Breast	KLHL29_D127Y_1	HLA-C05:01	YTDEPPSKQM	1	0.9162	0.0261	8.88	0.0812	3.23	1/982	1/7748
SNV	Breast	KLHL31_Q151H_5	HLA-C12:02	AVYLHIHTL	0.8254	0.9648	0.1426	12.65	0.0366	1.23	1/982	1/7748
SNV	Breast	KLK11_H63Y_1	HLA-C05:01	YSQPWQAAL	0.9982	0.9958	0.0968	14.77	0.1091	4.33	1/982	1/7748
SNV	Breast	KLK11_H63Y_1	HLA-C12:02	YSQPWQAAL	0.9988	0.989	0.0051	18.83	0.051	4.33	1/982	1/7748
SNV	Breast	KMO_D255H_7	HLA-C05:01	TSNDVVHFF	0.9954	0.8196	0.3299	80.61	0.2034	47.73	1/982	1/7748
SNV	Breast	KMO_D255H_7	HLA-C12:02	TSNDVVHFF	0.7859	0.9335	0.0922	104.59	0.1866	47.73	1/982	1/7748
SNV	Breast	LAMA3_G2718E_4	HLA-C05:01	YLGEIPIAI	0.997	0.9551	0.2274	3.65	0.0452	34.14	1/982	1/7748
SNV	Breast	LAMA3_G2718E_4	HLA-C12:02	YLGEIPIAI	0.6015	0.9667	0.641	67.04	0.135	34.14	1/982	1/7748
SNV	Breast	LAMP3_E241Q_2	HLA-B52:01	AQMGIQLI	0.8043	0.9254	0.2729	392.72	0.0518	1.74	1/982	1/7748
SNV	Breast	LARS_E178Q_4	HLA-B18:01	SEAQHWLDY	0.9868	0.6853	0.0211	16.69	0.0769	27.18	1/982	1/7748
SNV	Breast	LATS1_R838G_4	HLA-C05:01	LIDGDGHIKL	1	0.9118	0.0419	10.45	0.0921	11.43	1/982	1/7748
SNV	Breast	LIPE_A295T_5	HLA-C05:01	YQDTTSRLI	0.9998	0.9445	0.0861	15.43	0.1111	3.64	1/982	1/7748
SNV	Breast	LNPEP_H528Y_3	HLA-B52:01	SSYPISSSV	0.9902	0.5998	0.0481	438	0.0559	11.99	1/982	1/7748
SNV	Breast	LNPEP_H528Y_3	HLA-C12:02	SSYPISSSV	0.9918	0.942	0.0164	23.07	0.0627	11.99	1/982	1/7748
SNV	Breast	LRCH1_M255I_3	HLA-B18:01	REIKQLQVL	0.8317	0.9405	0.2725	291.74	0.2242	5.36	1/982	1/7748
SNV	Breast	LRP2_S2268C_4	HLA-B18:01	GENCEVIRY	0.9769	0.8524	0.2491	57.74	0.1247	2.34	1/982	1/7748
SNV	Breast	LRP4_D921N_6	HLA-A03:01	RLYWANAGMK	0.9995	0.6066	0.0506	6.95	0.0747	4.04	1/982	1/7748
SNV	Breast	LRP4_D921N_3	HLA-C12:02	WANAGMKTI	0.873	0.9815	0.5871	460.8	0.4525	4.04	1/982	1/7748
SNV	Breast	LRP4_K1808N_7	HLA-C12:02	YTKEKINIV	0.7788	0.9587	0.2323	343.31	0.3913	4.04	1/982	1/7748
SNV	Breast	LRP5_D47N_3	HLA-C05:01	LVNAGGVKL	0.9981	0.9732	0.4291	154.78	0.2592	34.53	1/982	1/7748
SNV	Breast	LRP5_D47N_3	HLA-C12:02	LVNAGGVKL	0.8181	0.9865	0.3174	108.77	0.191	34.53	1/982	1/7748
SNV	Breast	LSM14A_E394K_1	HLA-A03:01	KTFGIPLRPNR	0.9976	0.5414	1.0273	444.42	0.4854	48.46	1/982	1/7748
SNV	Breast	LTBR_L231V_4	HLA-C12:02	LAVVLPLAF	0.828	0.9713	0.1459	179.48	0.2589	14.79	1/982	1/7748
SNV	Breast	LTN1_A1527V_9	HLA-C05:01	LMPENPTYV	0.9889	0.9112	0.3505	118.32	0.2346	8.31	1/982	1/7748
SNV	Breast	MACROD1_R217G_6	HLA-A03:01	ITGGYGLPAK	0.9856	0.6093	0.4641	464.94	0.4929	11.95	1/982	1/7748
SNV	Breast	MAD2L1_E70K_7	HLA-C05:01	YLNNVVKQL	0.9977	0.8645	0.2153	20.15	0.1236	10.44	1/982	1/7748
SNV	Breast	MAD2L1_E70K_7	HLA-C12:02	YLNNVVKQL	0.9854	0.968	0.2956	44.43	0.1027	10.44	1/982	1/7748
SNV	Breast	MAGED1_R657T_2	HLA-C05:01	KTDPRDWTA	0.9998	0.949	0.4824	286.94	0.3332	21.37	1/982	1/7748
SNV	Breast	MAGEF1_R78G_4	HLA-C05:01	RLNGTVAEL	0.9974	0.947	0.6823	146.22	0.2526	58.3	1/982	1/7748
SNV	Breast	MAGEF1_R78G_4	HLA-C12:02	RLNGTVAEL	0.8877	0.9681	0.8804	197.5	0.2787	58.3	1/982	1/7748
SNV	Breast	MALT1_G455A_6	HLA-B18:01	QEKETALNVF	0.9557	0.9094	0.137	187.81	0.195	2.83	1/982	1/7748
SNV	Breast	MAN1B1_S640F_9	HLA-C12:02	RVPSGGYSF	0.6138	0.9826	0.6188	145.16	0.2276	29.69	1/982	1/7748
SNV	Breast	MAP4K1_S110L_3	HLA-C12:02	SLLELQISY	0.5276	0.9468	0.9775	486.18	0.4637	1.18	1/982	1/7748
SNV	Breast	MAP7_E728K_6	HLA-C12:02	LAFDDKGTL	0.9954	0.976	0.0703	57.52	0.12	23.47	1/982	1/7748
SNV	Breast	MAPKBP1_E1324K_9	HLA-A03:01	VTKGRAPGK	0.9649	0.5114	0.2619	80.97	0.2621	2.78	1/982	1/7748
SNV	Breast	MARS_H693Q_7	HLA-B18:01	LELQHYQQL	0.9193	0.8651	0.1094	98.55	0.1508	31.17	1/982	1/7748
SNV	Breast	MAST3_S1287L_9	HLA-B18:01	EEATGLPTL	0.8419	0.9027	0.1181	23.51	0.0885	4.14	1/982	1/7748
SNV	Breast	MAT2A_D39H_7	HLA-C05:01	ICDQISHAV	0.9999	0.9639	0.0649	107.52	0.2269	174.91	1/982	1/7748
SNV	Breast	MCC_R95T_6	HLA-C05:01	FQDFTTCRM	0.9996	0.9846	0.1271	134.07	0.2448	2.88	1/982	1/7748
SNV	Breast	MDH1B_F223L_7	HLA-C05:01	STNKEVLTL	0.9997	0.9783	0.2449	433.03	0.3852	1.06	1/982	1/7748
SNV	Breast	MDH1B_F223L_11	HLA-C05:01	VLDDSTNKEVL	1	0.9543	0.049	76.31	0.1991	1.06	1/982	1/7748
SNV	Breast	MDH1B_F223L_7	HLA-C12:02	STNKEVLTL	0.8866	0.9907	0.1134	156.91	0.2379	1.06	1/982	1/7748
SNV	Breast	MDM1_R193S_5	HLA-B18:01	SEYQSQFVW	0.9746	0.9341	0.0892	7.44	0.0502	3.18	1/982	1/7748
SNV	Breast	MDN1_E3216Q_5	HLA-A03:01	RSLPQPAQR	0.8548	0.5509	0.4641	488.71	0.5014	4.82	1/982	1/7748
SNV	Breast	MDN1_F3574L_5	HLA-B18:01	EERELRKQF	0.9928	0.547	0.1181	22.19	0.0865	4.82	1/982	1/7748
SNV	Breast	METTL14_E196K_6	HLA-B18:01	LEPPLKEYY	0.9937	0.9216	0.2004	124.87	0.1702	8.41	1/982	1/7748
SNV	Breast	MGAT4B_H372Y_9	HLA-C12:02	SLFQHVGTY	0.6601	0.9697	0.1289	65.09	0.1312	22.1	1/982	1/7748
SNV	Breast	MGA_L2462V_3	HLA-C12:02	KSVILTRAF	0.6093	0.9272	0.5079	477.41	0.4599	8.4	1/982	1/7748
SNV	Breast	MIB1_L707V_4	HLA-B18:01	HEAVRHHTL	0.809	0.832	0.091	122.09	0.1683	13.93	1/982	1/7748
SNV	Breast	MIB2_D368N_5	HLA-C12:02	RVSANSQPF	0.6819	0.9672	0.4149	454.25	0.4496	1.45	1/982	1/7748
SNV	Breast	MICA_L169F_9	HLA-C12:02	LAMNVRNFF	0.9218	0.9882	0.2549	85.8	0.1644	14.92	1/982	1/7748
SNV	Breast	MITF_S51F_9	HLA-C12:02	ASKPPISSF	0.9972	0.9313	0.0379	24.84	0.0703	4.96	1/982	1/7748
SNV	Breast	MITF_S51F_1	HLA-C12:02	FSMTSRILL	0.9968	0.97	0.0761	182.03	0.2618	4.96	1/982	1/7748
SNV	Breast	MLF1_V203A_7	HLA-B18:01	EEWQSEALKY	0.9938	0.8946	0.0574	13.66	0.0705	17.08	1/982	1/7748
SNV	Breast	MLH1_E199K_1	HLA-C12:02	KTVADVRTL	0.7828	0.9571	0.2008	245.7	0.3234	47.32	1/982	1/7748
SNV	Breast	MLLT3_H197N_7	HLA-C12:02	TSFSKPNKL	0.7711	0.9549	0.0809	322.86	0.3789	3.83	1/982	1/7748
SNV	Breast	MMP25_S345F_5	HLA-C05:01	RLQPFGQLV	0.9958	0.9515	0.6214	83.45	0.2062	1.69	1/982	1/7748
SNV	Breast	MOXD1_E357K_9	HLA-C12:02	HTIPPGMPKF	0.9992	0.9844	0.2323	276.29	0.3473	1.17	1/982	1/7748
SNV	Breast	MROH8_E834K_1	HLA-C05:01	KTDEKIVL	1	0.8622	0.04	324.5	0.3487	1.22	1/982	1/7748
SNV	Breast	MRPL14_Q72H_4	HLA-C05:01	VGDHILLAI	0.9999	0.9586	0.0781	28.42	0.1395	57.76	1/982	1/7748
SNV	Breast	MRPS14_S19L_9	HLA-C12:02	RTFKQMVPL	0.8584	0.9774	0.3234	482	0.4619	23.9	1/982	1/7748
SNV	Breast	MRPS34_E127K_1	HLA-C12:02	KAREIEHVM	0.9691	0.9399	0.1549	203.11	0.2845	104.77	1/982	1/7748
SNV	Breast	MSH3_G872E_3	HLA-C05:01	LLEEQDQYV	0.9983	0.9558	0.294	109.12	0.2281	13.04	1/982	1/7748
SNV	Breast	MSL3_E427K_5	HLA-B18:01	NEINKVLSW	0.9971	0.8948	0.0935	5.18	0.037	7.65	1/982	1/7748
SNV	Breast	MSL3_E427K_7	HLA-C05:01	RTNEINKVL	0.998	0.9173	0.5746	117.62	0.2341	7.65	1/982	1/7748
SNV	Breast	MSL3_E427K_7	HLA-C12:02	RTNEINKVL	0.6948	0.9656	0.3694	80.32	0.157	7.65	1/982	1/7748
SNV	Breast	MTHFR_G170E_4	HLA-B18:01	EEEEGFNY	0.9949	0.9786	0.164	93.04	0.1477	4.32	1/982	1/7748
SNV	Breast	MTHFR_G170E_5	HLA-B18:01	EEEEEGFNY	0.9722	0.9786	0.091	5.48	0.0384	4.32	1/982	1/7748
SNV	Breast	MTHFR_G170E_3	HLA-B18:01	EEEGFNYAV	0.8066	0.9762	0.1787	475.12	0.2581	4.32	1/982	1/7748
SNV	Breast	MTMR14_D68H_7	HLA-B18:01	LELFGRHY	0.9979	0.6775	0.145	254.18	0.2147	16.78	1/982	1/7748
SNV	Breast	MTO1_D584Y_6	HLA-B18:01	EEVDMYSL	0.9974	0.9623	0.1235	200.24	0.1986	2.89	1/982	1/7748
SNV	Breast	MTO1_D584Y_7	HLA-B18:01	YEEVDMYSL	0.954	0.9576	0.4284	101.84	0.1535	2.89	1/982	1/7748
SNV	Breast	MTRF1_S427L_1	HLA-C05:01	LADEEAIAEL	1	0.9368	0.0234	49.53	0.1697	2.2	1/982	1/7748
SNV	Breast	MXRA5_D1693N_7	HLA-C05:01	FTDRRTNQF	0.9995	0.8041	0.0278	2.9	0.0386	116.78	1/982	1/7748
SNV	Breast	MXRA5_D1693N_7	HLA-C12:02	FTDRRTNQF	0.645	0.9529	0.119	321.25	0.3779	116.78	1/982	1/7748
SNV	Breast	MYBBP1A_E780K_3	HLA-B18:01	EEKLGDEAM	0.9593	0.8156	0.1156	80.05	0.1404	11.77	1/982	1/7748
SNV	Breast	MYBBP1A_E780K_1	HLA-C05:01	KLGDEAMMAL	0.9994	0.9303	0.7282	22.4	0.1285	11.77	1/982	1/7748
SNV	Breast	MYEOV_H164Y_9	HLA-C12:02	SARVVGVAY	0.815	0.9678	0.2044	216.85	0.298	1.02	1/982	1/7748
SNV	Breast	MYH10_S1464C_6	HLA-B18:01	EEKSICARY	0.9933	0.6334	0.0449	12.87	0.0689	13.28	1/982	1/7748
SNV	Breast	MYLK_K1804E_3	HLA-B18:01	EEEPHVKPY	0.9974	0.909	0.0341	5.01	0.0362	4.26	1/982	1/7748
SNV	Breast	MYLK_K1804E_2	HLA-B18:01	EEPHVKPYF	0.9688	0.9138	0.137	160.46	0.186	4.26	1/982	1/7748
SNV	Breast	MYO1C_S968F_8	HLA-C05:01	YANLTGIFV	0.9871	0.9417	0.3505	30.24	0.1423	89.73	1/982	1/7748
SNV	Breast	MYO1C_S968F_1	HLA-C12:02	FVSSLSDSL	0.9903	0.9724	0.1889	122.19	0.2048	89.73	1/982	1/7748
SNV	Breast	NAA16_R442T_7	HLA-C05:01	SLDTADTFI	0.9992	0.8261	0.051	2.96	0.0392	4.52	1/982	1/7748
SNV	Breast	NACAD_D1351Y_9	HLA-C12:02	LSAPEQQEY	0.8387	0.9519	0.0727	460.86	0.4526	2.16	1/982	1/7748
SNV	Breast	NAT10_E962K_6	HLA-C05:01	SMDLSKYII	0.9998	0.7519	0.1324	77.83	0.2006	26.21	1/982	1/7748
SNV	Breast	NBEAL1_I1626M_9	HLA-B18:01	LEHVLSQSM	0.9944	0.8794	0.0351	31.63	0.1006	1.93	1/982	1/7748
SNV	Breast	NEK6_E123Q_8	HLA-B18:01	NELNIVLQL	0.9815	0.8578	0.0519	3.91	0.0301	40.56	1/982	1/7748
SNV	Breast	NELFA_S321C_7	HLA-B18:01	NEPALPCTSY	0.8145	0.7996	0.2604	267.84	0.2183	9.01	1/982	1/7748
SNV	Breast	NEU3_D52N_4	HLA-B18:01	QEDNRGITY	0.9944	0.8241	0.0449	4.77	0.035	3.46	1/982	1/7748
SNV	Breast	NID2_E1219K_6	HLA-C05:01	LLDGSKRKV	0.9994	0.9547	0.04	405.19	0.3768	6.23	1/982	1/7748
SNV	Breast	NIPBL_M264I_3	HLA-C12:02	STIRNAASF	0.9403	0.9486	0.1923	147.64	0.2298	12.91	1/982	1/7748
SNV	Breast	NISCH_D182N_9	HLA-C05:01	KTDLGHILNF	1	0.9464	0.3942	324.5	0.3487	17.33	1/982	1/7748
SNV	Breast	NLRC4_E905K_4	HLA-C05:01	HLEKVPQLV	0.9998	0.9732	0.1623	186.45	0.2806	1.3	1/982	1/7748
SNV	Breast	NLRC5_L1613F_4	HLA-C05:01	ELDFSHNQI	0.9998	0.881	0.1904	178.17	0.2754	1.71	1/982	1/7748
SNV	Breast	NLRP3_F642L_4	HLA-B18:01	EEDLVQRAM	0.9848	0.8976	0.0941	9.43	0.0611	1.5	1/982	1/7748
SNV	Breast	NOMO2_S280F_7	HLA-B18:01	REDGSFFFY	0.9488	0.9353	0.1684	89.46	0.1458	6.93	1/982	1/7748
SNV	Breast	NOTCH2_A2331S_1	HLA-C12:02	SVAGPLPTM	0.986	0.9388	0.0474	12.02	0.0347	31.19	1/982	1/7748
SNV	Breast	NPEPPS_S740F_9	HLA-C05:01	HVEGKQILF	0.9996	0.8468	0.2707	492.59	0.402	64.27	1/982	1/7748
SNV	Breast	NPEPPS_S740F_1	HLA-C05:01	FADLRSPVY	0.9983	0.9291	0.2311	32.41	0.1455	64.27	1/982	1/7748
SNV	Breast	NPEPPS_S740F_1	HLA-C05:01	FADLRSPVYL	1	0.9496	0.0628	8.27	0.0781	64.27	1/982	1/7748
SNV	Breast	NPEPPS_S740F_1	HLA-C12:02	FADLRSPVY	0.6443	0.9673	0.1426	81.37	0.1584	64.27	1/982	1/7748
SNV	Breast	NRCAM_L252F_11	HLA-B18:01	DELNDTIAANF	0.9994	0.98	0.184	312.74	0.2289	1.01	1/982	1/7748
SNV	Breast	NRCAM_L252F_4	HLA-C12:02	AANFSDTEF	0.8453	0.9668	0.2876	408.4	0.4273	1.01	1/982	1/7748
SNV	Breast	NRIP3_E191Q_6	HLA-C05:01	VVDDNQKNL	0.9999	0.9411	0.0194	3.41	0.0433	1.05	1/982	1/7748
SNV	Breast	NRIP3_E191Q_6	HLA-C05:01	VVDDNQKNLSL	1	0.9829	0.0334	45.79	0.165	1.05	1/982	1/7748
SNV	Breast	NSD1_I1582M_9	HLA-B18:01	TEMPRGKFM	0.9638	0.9649	0.1925	95	0.1487	15.37	1/982	1/7748
SNV	Breast	NT5C3A_D254Y_1	HLA-C12:02	YGALRNTEY	0.7394	0.9724	0.4861	152.32	0.234	11.64	1/982	1/7748
SNV	Breast	NT5DC3_L246V_8	HLA-B18:01	IDYEPVHVY	0.9781	0.9349	0.0774	8.73	0.0584	1.56	1/982	1/7748
SNV	Breast	NT5DC3_L246V_9	HLA-C05:01	NIDYEPVHV	0.9999	0.9371	0.0897	43.95	0.1625	1.56	1/982	1/7748
SNV	Breast	NUAK1_L246V_2	HLA-C12:02	TVVYGTMPF	0.781	0.9348	0.7891	442.94	0.4443	9.01	1/982	1/7748
SNV	Breast	NUCB1_E274D_6	HLA-C12:02	FTKELDKVY	0.7767	0.97	0.1648	177.9	0.257	68.29	1/982	1/7748
SNV	Breast	NUMA1_H492Y_8	HLA-B18:01	LEQASQAY	0.986	0.8013	0.1196	183.28	0.1936	44.75	1/982	1/7748
SNV	Breast	NUMA1_H492Y_10	HLA-B18:01	EELEQASQAY	0.98	0.8273	0.046	4.45	0.0333	44.75	1/982	1/7748
SNV	Breast	NUMA1_S595F_8	HLA-C05:01	AAEEREAFL	0.9998	0.9434	0.0711	369.02	0.365	44.75	1/982	1/7748
SNV	Breast	NUMA1_S595F_1	HLA-C12:02	FLRERDAAL	0.9914	0.9728	0.7801	71.44	0.143	44.75	1/982	1/7748
SNV	Breast	NUP155_R1074T_6	HLA-C05:01	KVDQNTVRY	0.9913	0.9364	0.6025	96.62	0.2182	12.26	1/982	1/7748
SNV	Breast	NUP155_R1074T_6	HLA-C05:01	KVDQNTVRYM	0.9999	0.9746	0.1573	310.46	0.3432	12.26	1/982	1/7748
SNV	Breast	NUP160_Q451E_2	HLA-B18:01	DEDPREMY	0.9996	0.949	0.3113	343.97	0.2355	23.34	1/982	1/7748
SNV	Breast	NXN_R155Q_2	HLA-C05:01	IQDDPEGLEF	1	0.9712	0.1271	69.84	0.1929	15.5	1/982	1/7748
SNV	Breast	OASL_E41Q_1	HLA-B18:01	QEFLRQEHF	0.9969	0.9389	0.0147	6.33	0.0434	2.11	1/982	1/7748
SNV	Breast	OASL_R80T_1	HLA-B18:01	TEVELVAF	0.9993	0.9408	0.0395	4.01	0.0307	2.11	1/982	1/7748
SNV	Breast	OASL_R80T_1	HLA-B18:01	TEVELVAFL	0.9436	0.9122	0.1059	26.27	0.0928	2.11	1/982	1/7748
SNV	Breast	OCRL_F286L_9	HLA-C05:01	ELDLSTEAL	0.9999	0.9198	0.0919	96.44	0.218	14	1/982	1/7748
SNV	Breast	ODF2L_E81Q_2	HLA-C12:02	FQNANLSAL	0.9916	0.9773	0.3059	17.14	0.0474	3.51	1/982	1/7748
SNV	Breast	ODF2L_G126A_2	HLA-C05:01	TADNLSSML	0.9999	0.8985	0.0234	3.65	0.0452	3.51	1/982	1/7748
SNV	Breast	ODF2L_G126A_2	HLA-C05:01	TADNLSSMLL	1	0.9381	0.0919	213.04	0.296	3.51	1/982	1/7748
SNV	Breast	ODF2L_G126A_3	HLA-C12:02	QTADNLSSM	0.9959	0.9383	0.0621	50.27	0.111	3.51	1/982	1/7748
SNV	Breast	OSBPL10_L463F_5	HLA-B18:01	VEYYFTAF	0.9987	0.8808	0.2209	44.07	0.1139	16.9	1/982	1/7748
SNV	Breast	OSBPL9_L555F_6	HLA-B18:01	DEHYIFTF	0.9997	0.7793	0.0295	4.75	0.0349	8.95	1/982	1/7748
SNV	Breast	OSBPL9_L555F_9	HLA-B18:01	LDYDEHYIF	0.8451	0.8753	0.3876	181.05	0.1929	8.95	1/982	1/7748
SNV	Breast	OSBPL9_L555F_3	HLA-C12:02	YIFTFPNGY	0.6841	0.9455	0.1549	12.58	0.0364	8.95	1/982	1/7748
SNV	Breast	P3H2_E302Q_6	HLA-C05:01	RLSPIQNFL	0.9978	0.9328	0.8526	15.79	0.1122	9.33	1/982	1/7748
SNV	Breast	P3H2_E302Q_6	HLA-C12:02	RLSPIQNFL	0.7225	0.9595	1.1586	407.68	0.427	9.33	1/982	1/7748
SNV	Breast	PASK_D780H_5	HLA-C05:01	GSDPHVGSL	0.9999	0.9809	0.0039	3.48	0.0439	3.69	1/982	1/7748
SNV	Breast	PBDC1_D34H_6	HLA-C05:01	YGNDPHIEM	0.9997	0.8968	0.1381	9.02	0.0823	95.07	1/982	1/7748
SNV	Breast	PBDC1_D34H_6	HLA-C12:02	YGNDPHIEM	0.9922	0.9333	0.1228	8.79	0.0263	95.07	1/982	1/7748
SNV	Breast	PCDH17_E690K_9	HLA-A03:01	RSVSGSLPK	0.9981	0.7573	0.0955	13.15	0.112	2.87	1/982	1/7748
SNV	Breast	PCDH17_E690K_4	HLA-C05:01	SLPKGVPRV	0.5309	0.9789	1.0097	320.33	0.3471	2.87	1/982	1/7748
SNV	Breast	PCDH18_L308V_8	HLA-B18:01	SERGHLTVF	0.9755	0.8617	0.0261	6.78	0.0463	1.79	1/982	1/7748
SNV	Breast	PCDHB5_L388V_5	HLA-C05:01	IQNDVPFLL	0.9986	0.942	0.6753	20.18	0.1237	3.37	1/982	1/7748
SNV	Breast	PCDHB5_L388V_5	HLA-C12:02	IQNDVPFLL	0.8079	0.9718	0.9387	110.63	0.1929	3.37	1/982	1/7748
SNV	Breast	PCDHGB6_G736E_2	HLA-B18:01	SEPVVPPNY	0.9285	0.909	0.1345	44.94	0.1147	1.81	1/982	1/7748
SNV	Breast	PCLO_Q1423E_5	HLA-C05:01	ILEAEASTL	0.9999	0.9832	0.1154	57.71	0.1796	3.98	1/982	1/7748
SNV	Breast	PDCL3_D173H_4	HLA-B18:01	LEGHIKAQF	0.9962	0.7336	0.0432	80.81	0.1409	67.06	1/982	1/7748
SNV	Breast	PDE4B_K677N_4	HLA-C05:01	LMENFQFEL	0.9999	0.9658	0.3719	102.82	0.2232	11.83	1/982	1/7748
SNV	Breast	PDE4DIP_E264K_6	HLA-B18:01	QEKLNKMSY	0.9943	0.7886	0.0525	30.73	0.0994	5.41	1/982	1/7748
SNV	Breast	PDGFRA_D985N_5	HLA-C05:01	RVDSNNAYI	0.9998	0.9087	0.0684	1.83	0.0213	4.38	1/982	1/7748
SNV	Breast	PDIA5_S23F_9	HLA-C12:02	VVLPSWLSF	0.7912	0.991	0.4634	194.8	0.2758	9.51	1/982	1/7748
SNV	Breast	PDIA5_S23F_3	HLA-C12:02	LSFAKVSSL	0.9995	0.974	0.0214	44.1	0.1022	9.51	1/982	1/7748
SNV	Breast	PDZD8_F192L_5	HLA-B18:01	EELALEAEVEY	0.9802	0.8843	0.1985	313.63	0.2291	7.74	1/982	1/7748
SNV	Breast	PDZD8_F192L_3	HLA-C12:02	LALEAEVEY	0.7787	0.987	0.1549	293.53	0.3595	7.74	1/982	1/7748
SNV	Breast	PEAK1_E1540K_10	HLA-A03:01	GTAQGFGPAK	0.9941	0.5771	0.2144	29.16	0.1625	2.73	1/982	1/7748
SNV	Breast	PEAK1_R1622Q_3	HLA-C05:01	YTQADLPRI	0.9982	0.9152	1.0994	233.14	0.307	2.73	1/982	1/7748
SNV	Breast	PEAK1_R1622Q_1	HLA-C05:01	QADLPRIPF	0.9997	0.9867	0.1741	322.78	0.3481	2.73	1/982	1/7748
SNV	Breast	PEG3_R965G_5	HLA-C12:02	TFRPGGMLY	0.7061	0.9732	1.865	327.65	0.3819	7.74	1/982	1/7748
SNV	Breast	PER1_D374H_1	HLA-B18:01	HERAAPLLGY	0.9538	0.6605	0.1945	192.98	0.1965	4.51	1/982	1/7748
SNV	Breast	PEX13_E372K_4	HLA-C05:01	SLDKQEAAF	0.9996	0.9388	0.04	11.98	0.0992	23.52	1/982	1/7748
SNV	Breast	PGGT1B_G220A_5	HLA-B18:01	LESHAGSTF	0.9895	0.8353	0.0153	6.96	0.0474	5.15	1/982	1/7748
SNV	Breast	PHF20_S424L_7	HLA-B18:01	VELQEILTV	0.7157	0.9479	0.2114	402.99	0.2463	27.48	1/982	1/7748
SNV	Breast	PHF20_S424L_1	HLA-C12:02	LTVEVTNTF	0.9941	0.9802	0.0125	13.49	0.0391	27.48	1/982	1/7748
SNV	Breast	PHF8_E192Q_5	HLA-C05:01	GSDKQIDVI	0.9993	0.91	0.088	411.04	0.3786	16.47	1/982	1/7748
SNV	Breast	PHLPP2_D92H_7	HLA-C05:01	YLQLHGHLV	0.9659	0.9875	0.2356	82.98	0.2058	3.87	1/982	1/7748
SNV	Breast	PI16_P217Q_7	HLA-C12:02	YLVTEAQSF	0.9749	0.9841	0.3575	180.7	0.2603	303.75	1/982	1/7748
SNV	Breast	PICALM_S542L_7	HLA-C05:01	VSDDLDLSL	0.9999	0.9379	0.0071	1.5	0.014	51	1/982	1/7748
SNV	Breast	PICALM_S542L_8	HLA-C05:01	LVSDDLDLSL	0.9998	0.9004	0.2979	52.59	0.1734	51	1/982	1/7748
SNV	Breast	PIEZO1_D2264H_7	HLA-B52:01	SQYSPEHI	0.8846	0.9203	0.2729	355.13	0.0482	32.25	1/982	1/7748
SNV	Breast	PIEZO1_D2264H_5	HLA-C12:02	YSPEHIVTA	0.8168	0.9711	0.3299	294.22	0.36	32.25	1/982	1/7748
SNV	Breast	PIK3C2B_S95L_10	HLA-C05:01	GSDPTLNYNL	1	0.895	0.1939	405.49	0.3769	7.37	1/982	1/7748
SNV	Breast	PIK3CG_R579T_8	HLA-B18:01	KELLWHFTY	0.9812	0.8338	0.0418	19.73	0.0824	1.85	1/982	1/7748
SNV	Breast	PIK3R5_T687R_1	HLA-C05:01	RTEIFIHSL	0.9999	0.8803	0.3719	88.42	0.2109	1.04	1/982	1/7748
SNV	Breast	PIKFYVE_S305L_1	HLA-C12:02	LASITNLSL	0.99	0.9783	0.0894	356.04	0.3987	6.45	1/982	1/7748
SNV	Breast	PLB1_S293L_9	HLA-B18:01	YETTPSLHL	0.98	0.9507	0.2184	320.47	0.2306	1.1	1/982	1/7748
SNV	Breast	PLCB4_F209L_6	HLA-C05:01	FSYEKLYEL	0.9967	0.9683	0.311	17.98	0.1183	13.41	1/982	1/7748
SNV	Breast	PLCB4_F209L_2	HLA-C05:01	KLYELTQKI	0.9278	0.8823	1.644	319.83	0.3469	13.41	1/982	1/7748
SNV	Breast	PLCB4_F209L_6	HLA-C12:02	FSYEKLYEL	0.9996	0.9869	0.0047	4.13	0.01	13.41	1/982	1/7748
SNV	Breast	PLCG1_S903L_9	HLA-C12:02	FVFSISMAL	0.986	0.9656	0.0032	6.7	0.0202	16.66	1/982	1/7748
SNV	Breast	PLEKHG2_E412D_3	HLA-C05:01	FFDNHPASI	0.9998	0.8758	0.0527	4.86	0.0554	2.41	1/982	1/7748
SNV	Breast	PLK4_R310T_6	HLA-C05:01	SLFDKTRLL	0.9603	0.7623	0.3344	297.75	0.3379	6.34	1/982	1/7748
SNV	Breast	PLK4_R310T_5	HLA-C05:01	LFDKTRLLI	0.9974	0.9189	0.2542	130.03	0.2423	6.34	1/982	1/7748
SNV	Breast	PLK4_R310T_6	HLA-C12:02	SLFDKTRLL	0.8305	0.9416	0.2549	73.48	0.1466	6.34	1/982	1/7748
SNV	Breast	PLXNB2_P1037S_8	HLA-B18:01	REAESLQSM	0.9161	0.9175	0.2509	65.27	0.1305	184.66	1/982	1/7748
SNV	Breast	PMS2_M817I_4	HLA-C12:02	KSVIIGTAL	0.8476	0.7971	0.1673	201.95	0.2833	5.4	1/982	1/7748
SNV	Breast	PNO1_D250Y_9	HLA-C12:02	RAVASRSAY	0.6723	0.9555	0.1289	103.43	0.1853	24.87	1/982	1/7748
SNV	Breast	PNPLA7_S469F_1	HLA-C05:01	FLLDGRVAL	0.9978	0.9861	0.3719	12.68	0.102	1.26	1/982	1/7748
SNV	Breast	PNPLA7_S469F_1	HLA-C05:01	FLLDGRVALL	0.9994	0.9818	0.5004	93.2	0.2152	1.26	1/982	1/7748
SNV	Breast	PNPLA7_S469F_1	HLA-C12:02	FLLDGRVAL	0.9972	0.9855	0.1356	11.85	0.0342	1.26	1/982	1/7748
SNV	Breast	POLB_E288K_4	HLA-C12:02	HALKKGFTI	0.5553	0.9573	0.4099	453.92	0.4494	7.17	1/982	1/7748
SNV	Breast	POMP_L132F_9	HLA-B18:01	SEVMGEPHF	0.987	0.9791	0.0274	9.62	0.0616	114.84	1/982	1/7748
SNV	Breast	POMP_L132F_5	HLA-B18:01	GEPHFMVEY	0.9339	0.7739	0.2004	92.08	0.1472	114.84	1/982	1/7748
SNV	Breast	PORCN_V130M_7	HLA-C12:02	RGAQMIMAM	0.6781	0.9583	1.1264	221.5	0.3024	2.13	1/982	1/7748
SNV	Breast	PPARA_K364T_10	HLA-B18:01	MEPKFDFAMTF	0.9964	0.9146	1.0049	68.17	0.1326	5.27	1/982	1/7748
SNV	Breast	PPFIBP1_L913F_9	HLA-C12:02	LAFSNFGNF	0.8449	0.9589	0.0739	203.3	0.2847	11.89	1/982	1/7748
SNV	Breast	PPP1R13L_F779L_9	HLA-B18:01	AEFGDELSL	0.8378	0.9522	0.1812	100.58	0.1524	10.77	1/982	1/7748
SNV	Breast	PPP2R5E_F76L_5	HLA-C12:02	VIFDLMDTL	0.988	0.9677	0.438	98.45	0.1798	11.78	1/982	1/7748
SNV	Breast	PREB_P155A_8	HLA-C05:01	QTDFSSDAL	0.9998	0.9082	0.1154	45.07	0.164	37.17	1/982	1/7748
SNV	Breast	PREB_P155A_5	HLA-C05:01	FSSDALQKV	0.9999	0.9554	0.1416	59.32	0.1815	37.17	1/982	1/7748
SNV	Breast	PREB_P155A_4	HLA-C05:01	SSDALQKVV	1	0.9773	0.049	242.77	0.3121	37.17	1/982	1/7748
SNV	Breast	PREB_P155A_5	HLA-C12:02	FSSDALQKV	0.933	0.9106	0.0306	256.54	0.3322	37.17	1/982	1/7748
SNV	Breast	PREX2_S1512L_9	HLA-C05:01	SASGVGLLL	0.997	0.9923	0.1324	171.19	0.2708	4.04	1/982	1/7748
SNV	Breast	PREX2_S1512L_9	HLA-C12:02	SASGVGLLL	0.8814	0.9882	0.0306	99.36	0.1808	4.04	1/982	1/7748
SNV	Breast	PRKAR1A_S77L_4	HLA-C05:01	RTDLREDEI	0.9998	0.9005	0.1233	93.64	0.2156	105.14	1/982	1/7748
SNV	Breast	PRKCQ_E135Q_4	HLA-B18:01	NEFQTEGF	0.9979	0.9431	0.046	22.92	0.0876	1.08	1/982	1/7748
SNV	Breast	PRKCQ_E135Q_4	HLA-B18:01	NEFQTEGFF	0.994	0.9546	0.0161	4.69	0.0346	1.08	1/982	1/7748
SNV	Breast	PRKCQ_E135Q_2	HLA-C12:02	FQTEGFFAL	0.9825	0.9918	0.3759	140.88	0.2236	1.08	1/982	1/7748
SNV	Breast	PRKG2_S651F_1	HLA-C12:02	FGVDQMMTY	0.8691	0.9728	0.0922	9.57	0.028	3.03	1/982	1/7748
SNV	Breast	PROM2_E207K_8	HLA-C05:01	LVSDVPQKL	0.9999	0.9245	0.1445	51.65	0.1723	90.78	1/982	1/7748
SNV	Breast	PROM2_E207K_8	HLA-C12:02	LVSDVPQKL	0.9796	0.9419	0.0426	33.43	0.0871	90.78	1/982	1/7748
SNV	Breast	PRRC2A_E217K_1	HLA-C05:01	KLEGPDSKL	0.9994	0.9217	0.1573	195.12	0.2858	53.93	1/982	1/7748
SNV	Breast	PRRC2B_D1776N_6	HLA-B18:01	VEIHVNSVL	0.9377	0.8822	0.0525	44.11	0.1139	42.72	1/982	1/7748
SNV	Breast	PRRC2B_S781F_6	HLA-B18:01	NESSFFASL	0.9815	0.9262	0.0372	10.87	0.0647	42.72	1/982	1/7748
SNV	Breast	PRRC2C_E490K_4	HLA-C05:01	RLDKKLGIL	0.9998	0.9165	0.1154	91.94	0.2141	58.54	1/982	1/7748
SNV	Breast	PRSS21_E183K_1	HLA-C05:01	KALPSPHTL	0.882	0.9689	0.2674	117.89	0.2343	1.3	1/982	1/7748
SNV	Breast	PRSS21_E183K_1	HLA-C12:02	KALPSPHTL	0.9177	0.986	0.0184	17.13	0.0474	1.3	1/982	1/7748
SNV	Breast	PSMC4_D161H_7	HLA-C05:01	TSDQKPHVM	1	0.958	0.0138	13.06	0.1033	60.78	1/982	1/7748
SNV	Breast	PSMD14_S35F_8	HLA-B18:01	AEQVYISF	0.9976	0.8922	0.2135	300.23	0.2261	24.32	1/982	1/7748
SNV	Breast	PTCH1_D860H_1	HLA-C05:01	HSDWETGKI	0.9998	0.9168	0.0726	451.72	0.3905	1.41	1/982	1/7748
SNV	Breast	PTPN22_S35Y_10	HLA-B18:01	NEFLKLKRQY	0.9718	0.7466	0.1985	47.85	0.1172	1.13	1/982	1/7748
SNV	Breast	PTPRB_D670H_1	HLA-C05:01	HVDNYEVTL	1	0.9806	0.0234	1.71	0.0188	2.01	1/982	1/7748
SNV	Breast	PTPRD_E782K_8	HLA-B18:01	WEFDDTTKH	0.9956	0.9191	0.1524	131.42	0.1744	2.03	1/982	1/7748
SNV	Breast	PUS7L_P159A_1	HLA-B18:01	AEFSIGRIL	0.7406	0.8437	0.143	21.06	0.0846	3.17	1/982	1/7748
SNV	Breast	PUS7L_P159A_8	HLA-B18:01	TELIGLPAEF	0.9385	0.8738	0.1684	56.07	0.1235	3.17	1/982	1/7748
SNV	Breast	PYROXD2_D247N_3	HLA-C12:02	ATNAVIGAM	0.9205	0.9683	0.1673	81.77	0.159	4.13	1/982	1/7748
SNV	Breast	QARS_L746V_6	HLA-C12:02	FQFERVGYF	0.9771	0.9761	0.2116	12.45	0.036	61.8	1/982	1/7748
SNV	Breast	QRICH1_D571Y_6	HLA-B18:01	DDIFSYLYY	0.9662	0.6365	0.2824	185.91	0.1944	34.59	1/982	1/7748
SNV	Breast	QRICH1_D571Y_8	HLA-C05:01	RVDDIFSYL	0.9999	0.88	0.0088	1.06	0.0022	34.59	1/982	1/7748
SNV	Breast	QRICH1_D571Y_8	HLA-C05:01	RVDDIFSYLY	0.9987	0.8422	1.5785	287.35	0.3334	34.59	1/982	1/7748
SNV	Breast	QRICH2_L805F_3	HLA-C12:02	YGFRQPGAY	0.6125	0.9664	0.4149	70.73	0.1417	3.44	1/982	1/7748
SNV	Breast	R3HDM2_Q252E_4	HLA-B18:01	TEFEQRFIL	0.9875	0.8505	0.0666	2.82	0.0152	9.51	1/982	1/7748
SNV	Breast	RAB36_I232M_8	HLA-B18:01	NEAGSCFMF	0.9908	0.8034	0.0558	29.36	0.0975	5.56	1/982	1/7748
SNV	Breast	RABGAP1_E166K_4	HLA-B18:01	SEVKALRMM	0.9368	0.8897	0.0615	35.84	0.1056	17.81	1/982	1/7748
SNV	Breast	RABGEF1_E468K_8	HLA-B18:01	REVQDIVKKY	0.8853	0.6355	0.1075	151.2	0.1826	1.22	1/982	1/7748
SNV	Breast	RAD21L1_E358Q_8	HLA-C05:01	AQDLIHAQL	0.9999	0.9921	0.1182	53.35	0.1742	1.13	1/982	1/7748
SNV	Breast	RAD51D_S33F_6	HLA-C05:01	VVDLVFADL	0.999	0.9781	0.1109	34.9	0.1489	1.76	1/982	1/7748
SNV	Breast	RAP1GDS1_E509Q_7	HLA-C12:02	HVIMQNQAL	0.8777	0.983	0.4196	87.35	0.1664	15.71	1/982	1/7748
SNV	Breast	RAP1GDS1_E509Q_4	HLA-C12:02	MQNQALVAL	0.9836	0.9759	0.7359	36.08	0.0911	15.71	1/982	1/7748
SNV	Breast	RAPGEF2_M350I_7	HLA-B18:01	FEGDPAITRF	0.9954	0.9255	0.0984	110.47	0.1601	5	1/982	1/7748
SNV	Breast	RAPGEF2_M350I_6	HLA-C05:01	EGDPAITRF	0.9997	0.9489	0.2781	356.19	0.3605	5	1/982	1/7748
SNV	Breast	RAPGEF2_M350I_7	HLA-C05:01	FEGDPAITRF	0.9999	0.9604	1.2899	202.96	0.2904	5	1/982	1/7748
SNV	Breast	RAPGEF3_H411Y_3	HLA-B52:01	SAYDPTETF	0.6888	0.9792	0.4417	407.05	0.0531	3.75	1/982	1/7748
SNV	Breast	RAPGEF3_H411Y_3	HLA-C05:01	SAYDPTETF	0.8392	0.9005	0.2896	94.3	0.2162	3.75	1/982	1/7748
SNV	Breast	RAPGEF3_H411Y_2	HLA-C05:01	AYDPTETFL	0.9991	0.8646	0.2153	39.6	0.1562	3.75	1/982	1/7748
SNV	Breast	RAPGEF3_H411Y_3	HLA-C05:01	SAYDPTETFL	0.9987	0.9061	0.1623	93.15	0.2152	3.75	1/982	1/7748
SNV	Breast	RAPGEF3_H411Y_3	HLA-C12:02	SAYDPTETF	0.9963	0.947	0.0011	2.56	0.0066	3.75	1/982	1/7748
SNV	Breast	RAPGEF3_H411Y_4	HLA-C12:02	SSAYDPTETF	0.9988	0.9379	0.8804	295.88	0.3612	3.75	1/982	1/7748
SNV	Breast	RASGEF1B_Q235H_9	HLA-B18:01	EEFVQAFVH	0.9938	0.7568	0.1211	128.65	0.1726	1.45	1/982	1/7748
SNV	Breast	RELN_E1556K_3	HLA-C05:01	FLKPQIISI	0.9404	0.8808	0.4389	228.14	0.3042	5.45	1/982	1/7748
SNV	Breast	RELN_E1556K_3	HLA-C12:02	FLKPQIISI	0.9846	0.9616	0.2642	48.37	0.1084	5.45	1/982	1/7748
SNV	Breast	REV3L_E1498K_1	HLA-C12:02	KAISQTKAL	0.9938	0.9697	0.0346	72.44	0.1448	4.57	1/982	1/7748
SNV	Breast	REV3L_S1075F_9	HLA-B18:01	NENIKRTLF	0.9949	0.6995	0.1114	16.52	0.0765	4.57	1/982	1/7748
SNV	Breast	REXO2_E77Q_4	HLA-C05:01	ILAQGPNLI	0.9857	0.9876	0.6482	50.91	0.1714	6.83	1/982	1/7748
SNV	Breast	RFTN1_S250L_3	HLA-A03:01	ELLPQGVSK	0.7087	0.5393	0.5144	435.51	0.4821	7.37	1/982	1/7748
SNV	Breast	RNASEH2A_F230L_3	HLA-C12:02	FGLPQFVRF	0.7972	0.9685	0.8909	389.98	0.4177	26.31	1/982	1/7748
SNV	Breast	RNASEL_S466L_9	HLA-B18:01	DEFARNVLL	0.9853	0.9244	0.0481	5.66	0.0392	11.33	1/982	1/7748
SNV	Breast	RNASEL_S466L_7	HLA-C12:02	FARNVLLSI	0.9726	0.9682	0.0483	120.59	0.203	11.33	1/982	1/7748
SNV	Breast	RND3_S95L_4	HLA-C05:01	YPDLDAVLI	0.9808	0.8265	0.2198	48.75	0.1688	11.86	1/982	1/7748
SNV	Breast	RND3_S95L_6	HLA-C12:02	LSYPDLDAV	0.7676	0.9351	0.2694	433.2	0.4396	11.86	1/982	1/7748
SNV	Breast	RNF113A_E112Q_1	HLA-B18:01	QDMGATAVY	0.507	0.9533	0.0824	116.38	0.1644	13.12	1/982	1/7748
SNV	Breast	RNF139_L71F_9	HLA-C12:02	FASSIVLIF	0.9901	0.956	0.0094	16.2	0.0455	51.61	1/982	1/7748
SNV	Breast	RNF149_E170Q_8	HLA-B52:01	ISYPKGRQI	0.9484	0.7957	0.4914	179.51	0.0243	21.18	1/982	1/7748
SNV	Breast	RNF149_E170Q_8	HLA-C12:02	ISYPKGRQI	0.8376	0.9177	0.1459	114.78	0.197	21.18	1/982	1/7748
SNV	Breast	RNF213_E5023K_6	HLA-C05:01	YSDACKVLSV	1	0.9007	0.1469	281.7	0.3309	14.1	1/982	1/7748
SNV	Breast	RNF217_E315K_3	HLA-B18:01	LEKTTVVY	0.9979	0.8743	0.1094	104.71	0.1557	1.58	1/982	1/7748
SNV	Breast	RNF217_E315K_6	HLA-B18:01	FEFLEKTTV	0.9289	0.951	0.0784	70.23	0.1341	1.58	1/982	1/7748
SNV	Breast	RNF217_E315K_6	HLA-B18:01	FEFLEKTTVVY	0.9995	0.8761	0.2114	282.2	0.2219	1.58	1/982	1/7748
SNV	Breast	RNF220_D455N_7	HLA-C12:02	FSKWASNEM	0.9995	0.9743	0.0336	121.71	0.2042	6.23	1/982	1/7748
SNV	Breast	RPL23_E99Q_2	HLA-C05:01	FQDNAGVIV	0.9995	0.987	0.1109	4.51	0.0518	58.93	1/982	1/7748
SNV	Breast	RPL23_E99Q_3	HLA-C05:01	YFQDNAGVIV	0.9985	0.9845	0.634	481.81	0.3987	58.93	1/982	1/7748
SNV	Breast	RPS6KC1_L995V_4	HLA-B18:01	FELVTGKTL	0.9268	0.9156	0.0935	30.78	0.0995	15.07	1/982	1/7748
SNV	Breast	RPTOR_D387H_8	HLA-B52:01	QAWDLAVHI	0.9847	0.9942	0.1306	303.17	0.0429	4	1/982	1/7748
SNV	Breast	S1PR3_L61F_9	HLA-C12:02	IVLENLMVF	0.9033	0.9841	0.2515	55.22	0.1173	18.68	1/982	1/7748
SNV	Breast	SARM1_D605N_3	HLA-B18:01	FENKLIQSV	0.9688	0.8299	0.1059	136.18	0.1766	1.76	1/982	1/7748
SNV	Breast	SBF1_S240Y_9	HLA-B18:01	TEHKVLFLY	0.9951	0.9444	0.0031	2.44	0.0107	9.62	1/982	1/7748
SNV	Breast	SBSPON_Q228E_8	HLA-C05:01	GLDSDGNETL	0.9999	0.96	0.0665	203.41	0.2906	10.46	1/982	1/7748
SNV	Breast	SCAF11_E216Q_2	HLA-C12:02	IQASEISAL	0.9895	0.9107	0.8271	373.02	0.4084	13.03	1/982	1/7748
SNV	Breast	SCARA3_R78K_4	HLA-C12:02	LVFKKVDSL	0.9326	0.9766	0.3114	80.26	0.1569	42.97	1/982	1/7748
SNV	Breast	SCN3B_E55K_4	HLA-B18:01	EEVKATTVV	0.7627	0.8168	0.1172	200.73	0.1988	1.99	1/982	1/7748
SNV	Breast	SCN9A_S1192T_4	HLA-B18:01	VEHTWFESF	0.9961	0.9594	0.0021	4.73	0.0348	1.01	1/982	1/7748
SNV	Breast	SCNN1A_R56Q_4	HLA-C12:02	RSYQELFEF	0.7539	0.9455	0.494	110.62	0.1929	18.45	1/982	1/7748
SNV	Breast	SCOC_S130L_1	HLA-B18:01	LENQVLGQY	0.9939	0.5554	0.0305	9.62	0.0616	26.45	1/982	1/7748
SNV	Breast	SDK1_G269E_2	HLA-B18:01	NEENKTSPF	0.9921	0.8441	0.1502	311.64	0.2287	2.56	1/982	1/7748
SNV	Breast	SDK2_R1172C_4	HLA-B18:01	TEYCVQVQAF	0.9778	0.6191	0.0689	82.27	0.1417	3.82	1/982	1/7748
SNV	Breast	SDK2_V1232M_8	HLA-C05:01	EADRNGLML	0.9999	0.8262	0.1416	96.43	0.218	3.82	1/982	1/7748
SNV	Breast	SDR16C5_G88E_2	HLA-B18:01	AEATRVHAY	0.9955	0.8025	0.0255	3.52	0.0239	12.72	1/982	1/7748
SNV	Breast	SEC24A_A838P_4	HLA-C05:01	FLGPDVQAI	0.9988	0.9937	0.2409	13.99	0.1065	11.17	1/982	1/7748
SNV	Breast	SEC24A_A838P_4	HLA-C12:02	FLGPDVQAI	0.9491	0.9837	0.5212	216.45	0.2977	11.17	1/982	1/7748
SNV	Breast	SEC24A_E463K_5	HLA-B18:01	NDVPKEFLY	0.931	0.8992	0.2238	493.64	0.2609	11.17	1/982	1/7748
SNV	Breast	SEC24A_E463K_7	HLA-C05:01	RVNDVPKEF	0.9939	0.8634	0.7161	287.45	0.3334	11.17	1/982	1/7748
SNV	Breast	SEC24A_E463K_7	HLA-C12:02	RVNDVPKEF	0.8222	0.9456	0.1459	5.51	0.0143	11.17	1/982	1/7748
SNV	Breast	SEC61A1_R231W_9	HLA-C05:01	RTDKVRALW	0.9702	0.9664	1.9195	335.06	0.3528	201.4	1/982	1/7748
SNV	Breast	SEH1L_Q198H_7	HLA-C12:02	NAMAKVHIF	0.9832	0.9715	0.2483	162.99	0.2429	5.32	1/982	1/7748
SNV	Breast	SEH1L_Q198H_5	HLA-C12:02	MAKVHIFEY	0.8493	0.9731	0.1228	191.73	0.2725	5.32	1/982	1/7748
SNV	Breast	SELP_S21F_6	HLA-C12:02	VVFGIFQLL	0.6264	0.9838	0.2876	418.52	0.4324	11.32	1/982	1/7748
SNV	Breast	SERAC1_Q64E_2	HLA-B18:01	TEVVEREKM	0.9739	0.9281	0.1389	256.97	0.2155	1.93	1/982	1/7748
SNV	Breast	SETDB2_E26Q_7	HLA-C05:01	KVDFIFQQV	0.9998	0.9757	0.0755	10.78	0.0937	3.35	1/982	1/7748
SNV	Breast	SETDB2_E26Q_4	HLA-C12:02	FIFQQVQNV	0.8406	0.9871	0.3515	186.64	0.267	3.35	1/982	1/7748
SNV	Breast	SFMBT1_K280N_8	HLA-C12:02	HTFSVNMNL	0.6238	0.9854	0.1256	47.74	0.1075	13.29	1/982	1/7748
SNV	Breast	SH2B1_E341D_7	HLA-B18:01	LEMPDRDNTF	0.9786	0.9159	0.1746	70.27	0.1341	2.83	1/982	1/7748
SNV	Breast	SH3BP4_D80N_5	HLA-C12:02	FSKGNHLYV	0.7272	0.9327	0.1289	405.1	0.4256	73.07	1/982	1/7748
SNV	Breast	SHOC2_H508Y_1	HLA-C05:01	YLPEEIGTL	0.9871	0.9479	0.1109	13.24	0.104	18.5	1/982	1/7748
SNV	Breast	SHOC2_H508Y_1	HLA-C12:02	YLPEEIGTL	0.9896	0.9881	0.3174	66.41	0.1338	18.5	1/982	1/7748
SNV	Breast	SHROOM4_H838Y_1	HLA-C05:01	YATDQSYHSM	0.9998	0.9396	0.5179	118.88	0.235	1.69	1/982	1/7748
SNV	Breast	SIGLEC6_A186S_5	HLA-C12:02	WMSASPTSL	0.9949	0.9853	0.575	167.37	0.2464	1.42	1/982	1/7748
SNV	Breast	SKAP2_E228K_8	HLA-B18:01	MESDIIPKDY	0.988	0.7691	0.0717	14.09	0.0715	6.61	1/982	1/7748
SNV	Breast	SLC12A9_S231Y_1	HLA-C12:02	YLPPRFGHF	0.945	0.9876	0.2876	326.15	0.3809	6.29	1/982	1/7748
SNV	Breast	SLC16A5_F403L_8	HLA-C12:02	YVFYMSSLF	0.7193	0.9847	0.6188	95.49	0.1764	1.22	1/982	1/7748
SNV	Breast	SLC25A12_D269H_4	HLA-B18:01	LEIHILYQL	0.9736	0.8057	0.0666	131.49	0.1744	3.92	1/982	1/7748
SNV	Breast	SLC26A4_D376N_6	HLA-C12:02	YATKYNYTI	0.7155	0.9668	0.1736	390.07	0.4178	1.64	1/982	1/7748
SNV	Breast	SLC29A4_R334H_1	HLA-C12:02	HSWPTFRAL	0.9777	0.9585	0.0288	40.74	0.0976	2.46	1/982	1/7748
SNV	Breast	SLC2A9_S150T_4	HLA-C12:02	FAITAALLM	0.9902	0.97	0.0139	14.18	0.0409	4.1	1/982	1/7748
SNV	Breast	SLC30A5_E485Q_7	HLA-C12:02	YGYGRIQIL	0.973	0.9591	0.3575	12.75	0.0369	25.53	1/982	1/7748
SNV	Breast	SLC39A6_E708K_7	HLA-C05:01	LVDMVPKML	0.9999	0.9273	0.0684	4.15	0.0488	129.36	1/982	1/7748
SNV	Breast	SLC39A6_E708K_8	HLA-C12:02	ALVDMVPKM	0.9474	0.9825	0.444	222.62	0.3034	129.36	1/982	1/7748
SNV	Breast	SLC41A3_D441H_5	HLA-C05:01	ALDPHNHCI	0.9998	0.7954	0.005	1.82	0.021	14.06	1/982	1/7748
SNV	Breast	SLC4A2_Q1013H_5	HLA-C05:01	FMETHITTL	0.9999	0.9787	0.038	3.28	0.0423	26.7	1/982	1/7748
SNV	Breast	SLC4A2_Q1013H_5	HLA-C12:02	FMETHITTL	0.9973	0.9769	0.0944	53.7	0.1154	26.7	1/982	1/7748
SNV	Breast	SLCO1A2_L357V_8	HLA-C05:01	SSSDAIFVM	0.9975	0.82	0.311	480.95	0.3985	1.6	1/982	1/7748
SNV	Breast	SLCO1A2_L357V_8	HLA-C12:02	SSSDAIFVM	0.9655	0.8955	0.0346	69.46	0.1394	1.6	1/982	1/7748
SNV	Breast	SLITRK6_L442V_6	HLA-B18:01	LEYLYVEY	0.9983	0.9152	0.1898	24.1	0.0893	2.65	1/982	1/7748
SNV	Breast	SMG1_E2842K_5	HLA-B18:01	MEASKTVHL	0.9797	0.9246	0.1273	209.61	0.2015	11.31	1/982	1/7748
SNV	Breast	SMG5_E79Q_1	HLA-B18:01	QELLWRKVY	0.9956	0.7327	0.0234	5.6	0.039	34.03	1/982	1/7748
SNV	Breast	SMG7_D468Y_3	HLA-B52:01	IAYNQPRLI	0.9988	0.7868	0.4664	42.36	0.009	35.74	1/982	1/7748
SNV	Breast	SMG7_D468Y_9	HLA-C12:02	ISIGKWIAY	0.896	0.8544	0.1356	183.71	0.2637	35.74	1/982	1/7748
SNV	Breast	SMG7_D468Y_3	HLA-C12:02	IAYNQPRLI	0.8365	0.9814	0.2439	144.57	0.227	35.74	1/982	1/7748
SNV	Breast	SNX22_L91M_9	HLA-B18:01	LEAYIQGIMY	0.9469	0.809	0.3292	325.99	0.2318	1.05	1/982	1/7748
SNV	Breast	SON_S728Y_8	HLA-B18:01	METHILAY	0.9985	0.7456	0.0481	7.77	0.0524	53.13	1/982	1/7748
SNV	Breast	SPAG9_M685I_7	HLA-B18:01	DEKDTSIKL	0.9871	0.8636	0.0921	19.04	0.0812	36	1/982	1/7748
SNV	Breast	SPAG9_M685I_9	HLA-C05:01	PLDEKDTSI	0.9998	0.836	0.2356	476.99	0.3974	36	1/982	1/7748
SNV	Breast	SPEN_D667H_7	HLA-B18:01	WETYQGHYY	0.9979	0.8241	0.0624	10.4	0.0636	13.5	1/982	1/7748
SNV	Breast	SPEN_D667H_9	HLA-B18:01	SEWETYQGHY	0.9239	0.8197	0.1044	30.59	0.0992	13.5	1/982	1/7748
SNV	Breast	SPEN_D667H_9	HLA-B18:01	SEWETYQGHYY	0.9884	0.8154	0.3681	56.79	0.124	13.5	1/982	1/7748
SNV	Breast	SPICE1_L722V_9	HLA-C12:02	STFPVAQSV	0.864	0.9706	0.0139	30.4	0.0823	6.38	1/982	1/7748
SNV	Breast	SPRY1_L170F_9	HLA-C05:01	IVDDLKGSF	0.9985	0.9452	0.0527	4.16	0.0488	37.23	1/982	1/7748
SNV	Breast	SPRY1_L170F_9	HLA-C12:02	IVDDLKGSF	0.7297	0.9605	0.3461	219.18	0.3003	37.23	1/982	1/7748
SNV	Breast	SPTLC3_H61Y_6	HLA-B18:01	EEAPLYVM	0.9989	0.9608	0.0838	36.8	0.1067	5.2	1/982	1/7748
SNV	Breast	SPTLC3_H61Y_7	HLA-B18:01	FEEAPLYVM	0.996	0.9686	0.0858	9.22	0.0606	5.2	1/982	1/7748
SNV	Breast	SPTLC3_H61Y_6	HLA-B18:01	EEAPLYVMV	0.8981	0.9554	0.1875	279.19	0.2211	5.2	1/982	1/7748
SNV	Breast	SPTLC3_H61Y_10	HLA-B18:01	VESFEEAPLY	0.8826	0.956	0.2509	86.66	0.1442	5.2	1/982	1/7748
SNV	Breast	SPTLC3_H61Y_6	HLA-B18:01	EEAPLYVMVF	0.9774	0.9568	0.1898	9.58	0.0615	5.2	1/982	1/7748
SNV	Breast	SPTLC3_H61Y_8	HLA-C05:01	SFEEAPLYV	0.9898	0.9415	0.2311	269.76	0.3254	5.2	1/982	1/7748
SNV	Breast	SRBD1_E461Q_8	HLA-C05:01	ISDGVKDQF	0.9997	0.839	0.0803	7.63	0.0752	18.87	1/982	1/7748
SNV	Breast	SRCAP_H1911Y_9	HLA-C12:02	RIFQLSEAY	0.577	0.9851	0.4813	124.74	0.2075	22.31	1/982	1/7748
SNV	Breast	SRD5A1_G154R_9	HLA-C05:01	VTDPRFLIRF	1	0.8782	0.7501	238.93	0.3101	4.61	1/982	1/7748
SNV	Breast	SRFBP1_E255Q_5	HLA-B18:01	EEFCQEEKEY	0.9934	0.8903	0.0958	108.64	0.1588	10.88	1/982	1/7748
SNV	Breast	SSC5D_H1186Y_5	HLA-C12:02	TTTPYPTTI	0.5425	0.9717	0.2239	356.75	0.3991	29.65	1/982	1/7748
SNV	Breast	STAG1_E1143K_6	HLA-B18:01	SEHGSKPDF	0.9348	0.7347	0.0583	412.69	0.248	11.14	1/982	1/7748
SNV	Breast	STAT4_S696F_1	HLA-B52:01	FVFIPISTI	0.8564	0.8287	0.1255	378.28	0.0504	1.88	1/982	1/7748
SNV	Breast	STAT4_S696F_1	HLA-C12:02	FVFIPISTI	0.9918	0.9773	0.1106	33.01	0.0865	1.88	1/982	1/7748
SNV	Breast	STK17A_E129Q_4	HLA-C12:02	EVYQTASEM	0.9309	0.9301	0.9775	235.12	0.3145	6.99	1/982	1/7748
SNV	Breast	STX1A_F33L_5	HLA-C05:01	FMDELFEQV	0.9996	0.9883	0.0015	1.85	0.0217	6.3	1/982	1/7748
SNV	Breast	SUPT16H_F198L_2	HLA-C05:01	FLKERVMEI	0.6973	0.9688	0.5364	440.46	0.3874	47.94	1/982	1/7748
SNV	Breast	SUPT16H_F198L_2	HLA-C12:02	FLKERVMEI	0.9677	0.98	0.6252	302.18	0.3654	47.94	1/982	1/7748
SNV	Breast	SUSD2_E623Q_6	HLA-C05:01	GTSPQQLFL	0.9992	0.8641	0.7358	433.87	0.3855	1220.18	1/982	1/7748
SNV	Breast	SYNE1_E6322Q_4	HLA-B18:01	QEQQQVLY	0.9775	0.8773	0.0838	309.24	0.2282	1.45	1/982	1/7748
SNV	Breast	SYNE1_E6322Q_6	HLA-B18:01	LEQEQQQVL	0.8343	0.8909	0.2184	259.93	0.2162	1.45	1/982	1/7748
SNV	Breast	SYNE2_E1586Q_5	HLA-B18:01	EEFNQHLEV	0.9358	0.8252	0.1148	38.93	0.1089	6.2	1/982	1/7748
SNV	Breast	SYNE2_Q5645H_7	HLA-B18:01	AEVSINHTI	0.6691	0.895	0.0958	238.86	0.2104	6.2	1/982	1/7748
SNV	Breast	SZT2_D1959H_1	HLA-B18:01	HESCAPRGY	0.9641	0.7664	0.0503	69.28	0.1334	3.2	1/982	1/7748
SNV	Breast	TAF1A_E75Q_8	HLA-B18:01	HQWQQAAQY	0.5704	0.9243	0.0921	431.36	0.2511	4.34	1/982	1/7748
SNV	Breast	TAF1A_E75Q_4	HLA-C12:02	QAAQYMYSY	0.722	0.9237	0.575	316.13	0.3746	4.34	1/982	1/7748
SNV	Breast	TANC2_E1817K_10	HLA-B18:01	MEIPLKPAYK	0.7581	0.8525	1.5775	244	0.2119	7.01	1/982	1/7748
SNV	Breast	TAOK2_D114Y_10	HLA-B18:01	MEYCLGSASY	0.9968	0.6884	0.0372	8.06	0.0543	10.16	1/982	1/7748
SNV	Breast	TAPT1_E349Q_6	HLA-C12:02	MVIASQIAV	0.9591	0.9744	0.5815	158.42	0.2391	5.97	1/982	1/7748
SNV	Breast	TARSL2_E607K_5	HLA-B18:01	MDFGKPWKM	0.6614	0.9703	0.5248	347.53	0.2362	4.53	1/982	1/7748
SNV	Breast	TAS2R5_P70S_8	HLA-C05:01	ILDLSLFSL	0.9998	0.916	0.0261	3.09	0.0406	1.32	1/982	1/7748
SNV	Breast	TBC1D8_I366M_9	HLA-C12:02	LPHPIIVSM	0.5312	0.9814	0.3984	237.17	0.3163	11.56	1/982	1/7748
SNV	Breast	TCF7L2_S138F_9	HLA-C12:02	FQSGSTHYF	0.9642	0.9891	0.119	35.43	0.0901	7.2	1/982	1/7748
SNV	Breast	TCF7_L127M_8	HLA-C12:02	TVYSAFNML	0.773	0.9716	0.8804	245.21	0.323	5.75	1/982	1/7748
SNV	Breast	TCF7_L127M_5	HLA-C12:02	SAFNMLMHY	0.7423	0.9522	0.0973	16.87	0.0469	5.75	1/982	1/7748
SNV	Breast	TCHP_S56F_5	HLA-B18:01	AEWSFKTSY	0.9967	0.9399	0.0131	1.84	0.007	3.61	1/982	1/7748
SNV	Breast	TDRD10_E217K_7	HLA-C12:02	WAMHVTKAL	0.9989	0.9776	0.0315	116.51	0.1987	1.81	1/982	1/7748
SNV	Breast	TENM3_R1043K_7	HLA-C12:02	MVAVVGKLF	0.8528	0.9798	0.4861	279.1	0.3493	3.12	1/982	1/7748
SNV	Breast	TGFBR1_D400Y_8	HLA-B18:01	FESFKRAY	0.9981	0.8801	0.137	71.97	0.1353	21.15	1/982	1/7748
SNV	Breast	TGFBR1_D400Y_8	HLA-B18:01	FESFKRAYIY	0.9965	0.8497	0.244	424.58	0.2499	21.15	1/982	1/7748
SNV	Breast	TGFBR1_D400Y_3	HLA-C12:02	RAYIYAMGL	0.5673	0.9888	0.7021	54.17	0.116	21.15	1/982	1/7748
SNV	Breast	TGFBR1_D400Y_1	HLA-C12:02	YIYAMGLVF	0.9351	0.9598	0.3299	20.32	0.0549	21.15	1/982	1/7748
SNV	Breast	THADA_D29N_3	HLA-C12:02	FANVEGKNL	0.9694	0.9862	0.2843	262.88	0.3372	7.37	1/982	1/7748
SNV	Breast	THBS3_Q174H_7	HLA-B18:01	LEIRTGHKAY	0.971	0.5131	0.2466	106.32	0.157	7.77	1/982	1/7748
SNV	Breast	THSD4_E584K_4	HLA-C12:02	FTSKSAQTF	0.9857	0.911	0.0031	28.81	0.0794	11.74	1/982	1/7748
SNV	Breast	THSD7B_D310Y_3	HLA-C12:02	RSYGQNAML	0.8246	0.9646	0.2789	196.39	0.2775	1.69	1/982	1/7748
SNV	Breast	TLK1_E61K_8	HLA-C05:01	SLDPRRQKL	0.9998	0.8504	0.0088	7.8	0.076	25.98	1/982	1/7748
SNV	Breast	TLR3_D575H_1	HLA-B18:01	HEIPVEVF	0.9992	0.9865	0.0305	4.44	0.0332	8.51	1/982	1/7748
SNV	Breast	TLR3_H218Y_9	HLA-B18:01	KEFSPGCFY	0.9801	0.9629	0.0638	66.25	0.1313	8.51	1/982	1/7748
SNV	Breast	TLR3_H218Y_1	HLA-C12:02	YAIGRLFGL	0.9989	0.9672	0.0295	11.24	0.0322	8.51	1/982	1/7748
SNV	Breast	TLR5_D689H_4	HLA-B18:01	TEPHMYKY	0.9971	0.9305	0.2491	155.06	0.184	2.95	1/982	1/7748
SNV	Breast	TLR5_D689H_1	HLA-C12:02	HMYKYDAYL	0.8013	0.9563	1.0541	314.6	0.3736	2.95	1/982	1/7748
SNV	Breast	TLR7_L153F_1	HLA-C12:02	FSLEANNIF	0.9059	0.975	0.0508	105.61	0.1877	1.71	1/982	1/7748
SNV	Breast	TMEM187_F56L_6	HLA-C05:01	FLAMPLNSL	0.982	0.9804	0.7358	61.13	0.1836	10.85	1/982	1/7748
SNV	Breast	TMEM187_F56L_6	HLA-C12:02	FLAMPLNSL	0.9958	0.9893	0.4038	88.55	0.1679	10.85	1/982	1/7748
SNV	Breast	TMEM67_L906H_5	HLA-B18:01	LERIHGMEF	0.9873	0.8325	0.0574	7.96	0.0537	1.46	1/982	1/7748
SNV	Breast	TMEM74B_S66L_2	HLA-C05:01	SLEEHETHF	0.999	0.8591	0.0968	146.43	0.2528	3.34	1/982	1/7748
SNV	Breast	TNNC2_E74Q_5	HLA-C05:01	TIDFQEFLV	0.9994	0.9826	0.1324	106.49	0.2261	2.07	1/982	1/7748
SNV	Breast	TOPBP1_E1350Q_2	HLA-C12:02	YQWGSSSIL	0.9589	0.9885	1.0986	302.79	0.3658	14.58	1/982	1/7748
SNV	Breast	TOX2_S440C_7	HLA-B18:01	QDFPHICEF	0.8411	0.9664	0.0921	487.89	0.26	1.56	1/982	1/7748
SNV	Breast	TP53BP1_Q729E_7	HLA-C12:02	ISIDSPEKL	0.9946	0.9615	0.0621	266.39	0.3399	8.24	1/982	1/7748
SNV	Breast	TP53BP1_S1665L_8	HLA-A03:01	RASMGVLLGK	0.9979	0.6243	0.0384	20.64	0.1379	8.24	1/982	1/7748
SNV	Breast	TRIM25_E266Q_1	HLA-B18:01	QEKRVNSKF	0.9547	0.9314	0.0679	109	0.159	19.26	1/982	1/7748
SNV	Breast	TRMT10C_R95T_1	HLA-B18:01	TEFIEMWRL	0.9562	0.8741	0.2531	58.83	0.1255	20.54	1/982	1/7748
SNV	Breast	TRMT2A_V171L_5	HLA-C05:01	RVADLVTPL	0.9979	0.9853	0.874	431.99	0.3849	15.16	1/982	1/7748
SNV	Breast	TRMT2A_V171L_4	HLA-C05:01	VADLVTPLW	0.9946	0.9938	0.6482	220.37	0.2999	15.16	1/982	1/7748
SNV	Breast	TRMT2A_V171L_5	HLA-C12:02	RVADLVTPL	0.9918	0.9712	0.0944	8.44	0.0255	15.16	1/982	1/7748
SNV	Breast	TRPC1_H603N_5	HLA-C12:02	FSLANVAIF	0.9777	0.9905	0.0419	82.97	0.1606	6.37	1/982	1/7748
SNV	Breast	TRRAP_W2491L_9	HLA-B18:01	WEAMGNHFL	0.9571	0.7531	0.2361	214.25	0.203	18.32	1/982	1/7748
SNV	Breast	TSC1_R249T_1	HLA-C05:01	TLETHDVVI	0.9972	0.9444	0.2084	447.67	0.3894	6.12	1/982	1/7748
SNV	Breast	TSGA10_M660I_5	HLA-C12:02	NAYHISSTM	0.9992	0.9483	0.009	15.12	0.0431	1.51	1/982	1/7748
SNV	Breast	TSNAX_D51H_8	HLA-B18:01	QELDARHHKY	0.9945	0.8642	0.039	18.92	0.0809	9.41	1/982	1/7748
SNV	Breast	TTC13_R563T_2	HLA-C05:01	WTDMFDIAV	0.9996	0.9886	0.2781	18.21	0.1189	8.34	1/982	1/7748
SNV	Breast	TTC13_R627K_5	HLA-C12:02	FIKDKILVY	0.9727	0.9205	0.0727	17.49	0.0481	8.34	1/982	1/7748
SNV	Breast	TTC28_Q1882E_2	HLA-B18:01	IEVSISVQL	0.9559	0.9195	0.0449	17.27	0.0779	1.16	1/982	1/7748
SNV	Breast	TTC28_Q1882E_6	HLA-C05:01	ASAPIEVSI	0.9995	0.9165	0.6482	459.39	0.3927	1.16	1/982	1/7748
SNV	Breast	TTC3_I252M_8	HLA-B18:01	ERFDIAIMY	0.7015	0.8935	0.687	66.86	0.1317	26.52	1/982	1/7748
SNV	Breast	TTC3_I252M_9	HLA-B18:01	KERFDIAIMY	0.9536	0.926	0.4404	26.29	0.0928	26.52	1/982	1/7748
SNV	Breast	TTF1_D420H_1	HLA-C12:02	HSVEGDGAM	0.6788	0.87	0.1459	436.25	0.4411	10.03	1/982	1/7748
SNV	Breast	TUBA1A_F52L_9	HLA-C05:01	GGDDSFNTL	0.9999	0.9286	0.0545	32.14	0.1451	99.2	1/982	1/7748
SNV	Breast	TXNDC16_I522M_1	HLA-C12:02	MLYSSVSVL	0.9927	0.9736	0.3629	61.01	0.1239	7.65	1/982	1/7748
SNV	Breast	UBA5_R188Q_6	HLA-B52:01	DNFEAQMTI	0.9958	0.7311	0.1224	125.84	0.0191	15.57	1/982	2/7748
SNV	Breast	UGCG_D236H_8	HLA-C12:02	FAQYIAEHY	0.9587	0.9708	0.0545	146.55	0.2288	16.66	1/982	1/7748
SNV	Breast	UHRF1BP1L_S800L_2	HLA-C05:01	SLSEADIHL	0.9991	0.8475	0.2238	33.14	0.1465	14.84	1/982	1/7748
SNV	Breast	UHRF1BP1L_S800L_1	HLA-C05:01	LSEADIHLL	0.9999	0.8484	0.0897	81.15	0.204	14.84	1/982	1/7748
SNV	Breast	USP28_D255H_6	HLA-B18:01	EEQQQHVSEF	0.9811	0.8513	0.1211	242.74	0.2115	8.18	1/982	1/7748
SNV	Breast	USP28_D255H_1	HLA-C05:01	HVSEFTHKL	0.9987	0.9393	0.2979	114.53	0.232	8.18	1/982	1/7748
SNV	Breast	USP28_D255H_1	HLA-C12:02	HVSEFTHKL	0.9414	0.9854	0.0524	30.07	0.0817	8.18	1/982	1/7748
SNV	Breast	USP40_D604N_7	HLA-C12:02	YQSLGGNEL	0.9003	0.9686	0.6188	183.95	0.264	9.24	1/982	1/7748
SNV	Breast	UTP18_E348K_1	HLA-C05:01	KVSPDGSFL	0.9962	0.9659	0.6025	201.15	0.2893	83.99	1/982	1/7748
SNV	Breast	UTP18_E348K_1	HLA-C12:02	KVSPDGSFL	0.63	0.9761	0.4813	306.26	0.3682	83.99	1/982	1/7748
SNV	Breast	UTRN_R3193T_8	HLA-C05:01	FHDDTHSTI	0.9991	0.7166	0.3202	194.77	0.2856	7.65	1/982	1/7748
SNV	Breast	VMP1_R394Q_4	HLA-C12:02	YAKQIQQRL	0.9968	0.965	0.1024	35.35	0.09	195.98	1/982	1/7748
SNV	Breast	VPS13A_L494F_4	HLA-C12:02	FVHFKSMSI	0.9475	0.9518	0.2154	223.2	0.3039	5.77	1/982	1/7748
SNV	Breast	VPS13B_E2521Q_4	HLA-B18:01	SELQYMIVSF	0.972	0.9322	0.1407	214.41	0.203	7.57	1/982	1/7748
SNV	Breast	VPS13C_E2408Q_3	HLA-C12:02	FSQGTASTF	0.9962	0.9776	0.0057	26.61	0.0746	6.82	1/982	1/7748
SNV	Breast	VPS13D_E3329Q_5	HLA-C05:01	YADKQQPNL	1	0.9689	0.0037	1.86	0.0218	11.61	1/982	1/7748
SNV	Breast	VPS13D_E3329Q_5	HLA-C12:02	YADKQQPNL	0.8152	0.9725	0.2284	484.26	0.4629	11.61	1/982	1/7748
SNV	Breast	VPS16_R461K_1	HLA-C05:01	KLYPLAIQI	0.7755	0.9758	1.4835	308.6	0.3424	27.83	1/982	1/7748
SNV	Breast	VPS39_D224N_4	HLA-C05:01	GQDNLTVVL	0.9999	0.9781	0.2311	69.51	0.1926	13.93	1/982	1/7748
SNV	Breast	WASF3_P118A_2	HLA-C12:02	IANPVADIY	0.7008	0.9504	0.1673	42.37	0.0996	4.19	1/982	1/7748
SNV	Breast	WBSCR22_M87I_8	HLA-C05:01	GLDISPAIL	0.9999	0.9657	0.0919	6.17	0.0669	19.08	1/982	1/7748
SNV	Breast	WBSCR22_M87I_1	HLA-C05:01	ILDEAVDREI	0.9999	0.9713	0.1085	104.97	0.2249	19.08	1/982	1/7748
SNV	Breast	WDFY3_V1197F_9	HLA-B18:01	IEGQWHHLF	0.993	0.9569	0.0274	23.86	0.089	9.98	1/982	1/7748
SNV	Breast	WDR11_E274Q_5	HLA-C05:01	ILDLQVNQTV	0.9999	0.9915	0.2047	243.94	0.3127	4.39	1/982	1/7748
SNV	Breast	WDR76_K582N_5	HLA-B18:01	HETGNRVHSF	0.9118	0.9439	0.0824	109.79	0.1596	7.79	1/982	1/7748
SNV	Breast	WEE1_Q375H_6	HLA-B18:01	DHMLIHNEY	0.7662	0.6948	0.749	247.77	0.213	33.38	1/982	1/7748
SNV	Breast	WHSC1L1_S681F_7	HLA-C05:01	TADADVFDV	0.9993	0.9505	0.1064	142.2	0.2496	4.61	1/982	1/7748
SNV	Breast	WIF1_F103L_3	HLA-B18:01	YELLSLRSL	0.9684	0.8491	0.1913	31.91	0.101	24.94	1/982	1/7748
SNV	Breast	WNK1_E388Q_7	HLA-C12:02	SVIGTPQFM	0.9316	0.854	0.1325	45.95	0.105	28.15	1/982	1/7748
SNV	Breast	WWP2_E742D_4	HLA-C05:01	YFDDKELEL	0.9999	0.9308	0.0278	2.82	0.0376	15.52	1/982	1/7748
SNV	Breast	WWP2_E742D_4	HLA-C05:01	YFDDKELELM	0.9999	0.9341	0.0649	257.54	0.3195	15.52	1/982	1/7748
SNV	Breast	WWP2_E742D_4	HLA-C12:02	YFDDKELEL	0.9843	0.9658	0.3822	382.2	0.4135	15.52	1/982	1/7748
SNV	Breast	XPO1_R14C_7	HLA-C05:01	LADHAACQL	0.9999	0.986	0.0045	25.57	0.1346	44.76	1/982	1/7748
SNV	Breast	XPO5_S875L_1	HLA-B52:01	LAFVNLNNI	0.9964	0.8825	0.257	480.81	0.0594	13.9	1/982	1/7748
SNV	Breast	XRCC1_H624Y_9	HLA-B18:01	NEKQKLLPY	0.9966	0.7081	0.0395	21.1	0.0847	13.29	1/982	1/7748
SNV	Breast	ZBTB43_E82Q_2	HLA-C12:02	FQNILLSSY	0.8687	0.952	0.5015	183.83	0.2638	5.84	1/982	1/7748
SNV	Breast	ZBTB8A_R407K_4	HLA-B18:01	DENKSYVEI	0.9708	0.7334	0.1705	213.8	0.2028	2.55	1/982	1/7748
SNV	Breast	ZC3H12B_E43Q_1	HLA-C05:01	QSDPEQISL	1	0.9499	0.0209	2.73	0.0365	1.69	1/982	1/7748
SNV	Breast	ZC3H12B_E43Q_2	HLA-C05:01	SQSDPEQISL	0.9999	0.9006	0.4627	320.22	0.3471	1.69	1/982	1/7748
SNV	Breast	ZCCHC4_Q144E_2	HLA-B18:01	HEVLGNVSI	0.8978	0.9612	0.0892	61.89	0.128	3.07	1/982	1/7748
SNV	Breast	ZDHHC20_E302K_5	HLA-C05:01	GMDPKQASV	1	0.9555	0.0755	4.79	0.0547	35.52	1/982	1/7748
SNV	Breast	ZDHHC23_I69M_1	HLA-C05:01	MMDTISDRL	0.9998	0.94	0.038	1.78	0.0202	3.5	1/982	1/7748
SNV	Breast	ZFP30_H368D_6	HLA-C12:02	FSRGYDLTL	0.9977	0.9497	0.0426	74.41	0.1482	4	1/982	1/7748
SNV	Breast	ZFP62_R297T_8	HLA-C05:01	FSNSSGLTV	0.9994	0.8736	0.1211	14.69	0.1088	9.19	1/982	1/7748
SNV	Breast	ZFP62_R297T_8	HLA-C12:02	FSNSSGLTV	0.8045	0.9352	0.0276	49.58	0.1101	9.19	1/982	1/7748
SNV	Breast	ZFX_E154K_9	HLA-A03:01	HVGHVGHVK	0.9806	0.5067	0.5771	255.83	0.395	12.27	1/982	1/7748
SNV	Breast	ZFYVE9_R748T_8	HLA-C05:01	YMDRKEATV	0.9998	0.9836	0.032	3.69	0.0455	4.93	1/982	1/7748
SNV	Breast	ZKSCAN5_Q622E_8	HLA-A03:01	RVRSHLVEH	0.9942	0.5342	0.573	328.58	0.4352	9.05	1/982	1/7748
SNV	Breast	ZKSCAN7_Q38H_5	HLA-C12:02	QTWGHGSSL	0.9778	0.9846	0.0894	204.88	0.2863	2.33	1/982	1/7748
SNV	Breast	ZMYM1_Q32E_7	HLA-B18:01	TEPDNAEEY	0.915	0.9366	0.1524	150.63	0.1823	4.82	1/982	1/7748
SNV	Breast	ZMYND8_S908L_9	HLA-C12:02	GSMSTLVSL	0.9863	0.9781	0.3759	425.3	0.4358	53.12	1/982	1/7748
SNV	Breast	ZNF136_D8N_6	HLA-B18:01	FENVDVNF	0.9969	0.9172	0.2684	115.16	0.1635	5.78	1/982	1/7748
SNV	Breast	ZNF146_L257V_9	HLA-C05:01	FSQFSTLAV	0.9988	0.9383	0.346	446.22	0.389	54.16	1/982	1/7748
SNV	Breast	ZNF148_Q102E_6	HLA-B18:01	HERLPEGLQY	0.9503	0.8711	0.0877	17.18	0.0778	12.08	1/982	1/7748
SNV	Breast	ZNF180_H395Q_8	HLA-C12:02	KSFSRSSQL	0.8888	0.9094	0.1046	313.62	0.373	4.77	1/982	1/7748
SNV	Breast	ZNF197_Q202E_7	HLA-B18:01	EENPRNELM	0.9853	0.8912	0.1156	99.38	0.1515	10.3	1/982	1/7748
SNV	Breast	ZNF197_Q202E_2	HLA-B18:01	NELMALMLL	0.9374	0.6529	0.1273	59.75	0.1263	10.3	1/982	1/7748
SNV	Breast	ZNF282_S322F_1	HLA-C05:01	FAQDLLSRI	0.9992	0.867	0.2356	159.67	0.2628	14.06	1/982	1/7748
SNV	Breast	ZNF282_S322F_1	HLA-C12:02	FAQDLLSRI	0.9963	0.9318	0.1228	178.09	0.2573	14.06	1/982	1/7748
SNV	Breast	ZNF285_Q180E_2	HLA-B18:01	AEHDDSLSW	0.937	0.9369	0.1211	134.16	0.1757	1.56	1/982	1/7748
SNV	Breast	ZNF30_Y526H_8	HLA-C12:02	KAFSSGSHL	0.9618	0.9851	0.0101	49.03	0.1093	5.85	1/982	1/7748
SNV	Breast	ZNF35_Q261H_5	HLA-C12:02	KAFIHSANL	0.9404	0.9653	0.1106	88.42	0.1677	8.33	1/982	1/7748
SNV	Breast	ZNF35_Q261H_3	HLA-C12:02	FIHSANLVV	0.9476	0.9678	0.119	388.87	0.4171	8.33	1/982	1/7748
SNV	Breast	ZNF432_Q50E_2	HLA-B18:01	YEVSKPDAL	0.9685	0.7472	0.1172	54.13	0.1221	1.95	1/982	1/7748
SNV	Breast	ZNF454_S257Y_7	HLA-C12:02	KAFSVSYSL	0.8701	0.9422	0.0545	22.57	0.0604	1.2	1/982	1/7748
SNV	Breast	ZNF454_S257Y_5	HLA-C12:02	FSVSYSLTY	0.8369	0.9368	0.0116	9.77	0.0284	1.2	1/982	1/7748
SNV	Breast	ZNF540_R153T_4	HLA-C05:01	STDTKRPSF	0.9996	0.9201	0.0628	41.51	0.1591	3.04	1/982	1/7748
SNV	Breast	ZNF563_E53K_6	HLA-B18:01	EEQNTKDQY	0.9899	0.6739	0.0569	37.6	0.1075	8.24	1/982	1/7748
SNV	Breast	ZNF655_L151V_9	HLA-C05:01	TIDADQRVV	0.9999	0.9717	0.0711	178.21	0.2754	10.19	1/982	1/7748
SNV	Breast	ZNF662_L21V_8	HLA-B52:01	FPFPKPAVI	0.999	0.9576	0.0018	114.96	0.0179	6.28	1/982	1/7748
SNV	Breast	ZNF718_S436L_7	HLA-C12:02	KAFKQSLHL	0.8158	0.9486	0.0336	73.41	0.1465	9.37	1/982	1/7748
SNV	Breast	ZNF845_F10L_3	HLA-C12:02	TLRDVAIEF	0.9963	0.9727	0.3359	124.73	0.2075	8.94	1/982	1/7748
SNV	Breast	ZNF91_S307L_7	HLA-C05:01	KAFSHSLTL	0.595	0.9534	0.1904	393.5	0.3731	12.72	1/982	1/7748
SNV	Breast	ZNF91_S307L_7	HLA-C12:02	KAFSHSLTL	0.9876	0.9745	0.0011	3.51	0.0088	12.72	1/982	1/7748
SNV	Breast	ZSCAN2_K229N_8	HLA-B18:01	YECPQCGNTF	0.9694	0.8642	0.1746	224.26	0.2061	1.55	1/982	1/7748
SNV	Breast	ZZZ3_D493H_5	HLA-C05:01	YFESHHVAL	0.9574	0.8595	0.2707	205.53	0.2918	11.76	1/982	1/7748
SNV	Breast	CKAP5_D1831N_8	HLA-B15:01	SSKAKVNNF	0.9911	0.8892	0.5559	221.32	0.3846	63.18	1/982	1/7748
SNV	Breast	HTT_E2324K_7	HLA-C03:03	VAVQPGKQL	0.9991	0.9629	0.0372	9.95	0.0821	41.1	1/982	1/7748
SNV	Breast	MAP3K5_E426K_6	HLA-C03:03	KAFESKPTL	0.9996	0.994	0.0158	1.95	0.0161	26.49	1/982	1/7748
SNV	Breast	MDP1_S69P_4	HLA-C03:03	AAAPRTSEI	0.9984	0.979	0.0631	5.33	0.0523	3.35	1/982	1/7748
SNV	Breast	MKL2_Q24H_1	HLA-B35:01	HSEAVAHEF	0.8941	0.9444	0.277	38.76	0.2241	58.61	1/982	1/7748
SNV	Breast	RFFL_S36F_8	HLA-B35:01	YSNPGYSFF	0.9875	0.8708	0.1454	43.82	0.234	14.24	1/982	1/7748
SNV	Breast	RFFL_S36F_8	HLA-B15:01	YSNPGYSFF	0.996	0.8913	0.1275	15.61	0.1233	14.24	1/982	1/7748
SNV	Breast	RFFL_S36F_11	HLA-B15:01	MQAYSNPGYSF	1	0.7827	0.505	280.39	0.4201	14.24	1/982	1/7748
SNV	Breast	RFFL_S36F_8	HLA-C04:01	YSNPGYSFF	0.9829	0.5918	0.6482	190.42	0.0982	14.24	1/982	1/7748
SNV	Breast	RFFL_S36F_8	HLA-C03:03	YSNPGYSFF	0.9958	0.9905	0.0675	13.16	0.0995	14.24	1/982	1/7748
SNV	Breast	RFFL_S36F_2	HLA-C03:03	SFFPSPTGL	0.9283	0.9964	1.1298	206.54	0.3657	14.24	1/982	1/7748
SNV	Breast	RFFL_S36F_3	HLA-C03:03	YSFFPSPTGL	0.9996	0.9917	0.2959	122.67	0.2957	14.24	1/982	1/7748
SNV	Breast	SENP6_S439F_9	HLA-B15:01	ALALSCQSF	0.9975	0.8971	0.0665	273.97	0.4162	37.29	1/982	1/7748
SNV	Breast	SF3B1_E622Q_9	HLA-B35:01	RPDIDNMDQY	0.9576	0.9258	0.4908	12.26	0.1452	214.39	1/982	1/7748
SNV	Breast	STEAP1_S181C_3	HLA-B15:01	SLCYPMRRSY	0.9969	0.7361	1.7237	152.21	0.3357	22.68	1/982	1/7748
SNV	Breast	TJP3_A631G_5	HLA-C03:03	VADIGMQKL	0.9998	0.9871	0.084	111.61	0.2859	59.61	1/982	1/7748
SNV	Breast	TP53BP1_G1783A_6	HLA-B15:01	SQLRAAAGY	0.9985	0.77	0.0299	4.97	0.0513	28.2	1/982	1/7748
SNV	Breast	UBXN1_E3K_7	HLA-B35:01	TALESLIEM	0.9977	0.9576	0.1219	26.79	0.1954	82.13	3/982	3/7748
SNV	Breast	UBXN1_E3K_7	HLA-B35:01	TALESLIEM	0.9977	0.9576	0.1219	26.79	0.1954	82.13	3/982	3/7748
SNV	Breast	UBXN1_E3K_7	HLA-B35:01	TALESLIEM	0.9977	0.9576	0.1219	26.79	0.1954	82.13	3/982	3/7748
SNV	Breast	UBXN1_E3K_7	HLA-C03:03	TALESLIEM	0.9997	0.9848	0.031	4.91	0.0489	82.13	3/982	3/7748
SNV	Breast	UBXN1_E3K_7	HLA-C03:03	TALESLIEM	0.9997	0.9848	0.031	4.91	0.0489	82.13	3/982	3/7748
SNV	Breast	UBXN1_E3K_7	HLA-C03:03	TALESLIEM	0.9997	0.9848	0.031	4.91	0.0489	82.13	3/982	3/7748
SNV	Breast	ZNF155_F124L_8	HLA-B15:01	SIINNSQLF	0.9985	0.9324	0.2634	17	0.1292	3.05	1/982	1/7748
SNV	Breast	ACTG1_R28L_3	HLA-B42:01	APLAVFPSI	0.7499	0.8329	0.038	2.66	0.052	6105.55	1/982	1/7748
SNV	Breast	ACTG1_R28L_8	HLA-C17:01	FAGDDAPLAV	0.9474	0.9938	0.1923	188.59	0.2949	6105.55	1/982	1/7748
SNV	Breast	AKAP8_R497W_7	HLA-B42:01	QPQLLQWHL	0.5098	0.9212	0.0855	73.43	0.2933	42.83	1/982	1/7748
SNV	Breast	ARHGEF11_L972V_7	HLA-B15:03	MIHEGPVTW	0.7744	0.8522	0.306	318.32	0.832	65.07	1/982	1/7748
SNV	Breast	CANT1_G336R_1	HLA-B15:03	RAVVPTHGF	0.9157	0.651	0.0457	8.04	0.1457	139.45	1/982	1/7748
SNV	Breast	CCDC61_R507Q_8	HLA-C17:01	ALQEYMNQL	0.5919	0.9634	0.1711	68.77	0.1662	8.04	1/982	1/7748
SNV	Breast	DOCK8_R784H_2	HLA-B15:03	SHLEPLVLF	0.7836	0.8953	0.7783	57.3	0.4444	4.85	1/982	1/7748
SNV	Breast	DOCK8_R784H_1	HLA-C17:01	HLEPLVLFL	0.9082	0.988	0.07	11.31	0.0412	4.85	1/982	1/7748
SNV	Breast	DOCK8_R784H_1	HLA-C02:10	HLEPLVLFL	0.6547	0.9951	0.9376	322.21	0.3584	4.85	1/982	1/7748
SNV	Breast	EVI5_H385Q_7	HLA-B15:03	FQKVIPQQF	0.9271	0.7832	0.0092	1.49	0.0129	14.52	1/982	1/7748
SNV	Breast	EVI5_H385Q_1	HLA-B15:03	QQFDGVPDKL	0.8878	0.8378	0.8884	410.71	0.8947	14.52	1/982	1/7748
SNV	Breast	MBD5_D686H_7	HLA-B42:01	VPKPGPHL	0.9981	0.6693	0.1228	19.1	0.1768	5.53	1/982	1/7748
SNV	Breast	MBD5_D686H_7	HLA-B42:01	VPKPGPHLL	0.8345	0.653	0.0249	1.18	0.006	5.53	1/982	1/7748
SNV	Breast	MBD5_D686H_8	HLA-B42:01	AVPKPGPHLL	0.8306	0.6425	1.8455	6.58	0.102	5.53	1/982	1/7748
SNV	Breast	MBD5_D686H_9	HLA-B42:01	SAVPKPGPHLL	0.9967	0.5273	1.3971	62.04	0.2766	5.53	1/982	1/7748
SNV	Breast	MLC1_N110S_8	HLA-B15:03	RNANVIPSF	0.9767	0.8821	0.141	2.55	0.0381	526.3	1/982	1/7748
SNV	Breast	MLC1_N110S_9	HLA-B15:03	RRNANVIPSF	0.9409	0.8604	1.3775	21.19	0.2692	526.3	1/982	1/7748
SNV	Breast	RGPD8_P1153A_3	HLA-B15:03	KTAELAEEF	0.9651	0.8843	0.412	298.38	0.816	1.12	1/982	1/7748
SNV	Breast	RGPD8_P1153A_7	HLA-B42:01	AAKFKTAEL	0.9992	0.7136	0.2062	48.91	0.253	1.12	1/982	1/7748
SNV	Breast	SHE_L454M_2	HLA-B15:03	TMNQTSAVF	0.9746	0.7719	0.039	3.29	0.0593	19.11	1/982	1/7748
SNV	Breast	SHE_L454M_10	HLA-B15:03	AQTKDNKYTM	0.7222	0.7086	1.759	219.84	0.7421	19.11	1/982	1/7748
SNV	Breast	SHE_L454M_3	HLA-C17:01	YTMNQTSAV	0.9442	0.9619	0.1711	11.23	0.0409	19.11	1/982	1/7748
SNV	Breast	SHE_L454M_3	HLA-C02:10	YTMNQTSAV	0.9622	0.9745	0.069	13.92	0.0281	19.11	1/982	1/7748
SNV	Breast	TP53_S215I_4	HLA-B15:03	FRHIVVVPY	0.6731	0.55	0.1255	200.54	0.72	162.62	1/982	1/7748
SNV	Breast	TRAM2_H317Q_5	HLA-B15:03	SQLRQWREY	0.7192	0.6685	0.0633	6.03	0.1176	98.57	1/982	1/7748
SNV	Breast	CAPN2_A252T_3	HLA-B44:03	SETITFQKL	0.9993	0.8718	0.1039	9.54	0.1209	52.7	1/982	1/7748
SNV	Breast	CAPN2_A252T_6	HLA-C15:05	AADSETITF	0.8727	0.9292	0.0578	242.38	0.3966	52.7	1/982	1/7748
SNV	Breast	CAPN2_A252T_6	HLA-C04:01	AADSETITF	0.9998	0.7336	0.035	412.02	0.1405	52.7	1/982	1/7748
SNV	Breast	SLC16A6_M95I_3	HLA-C15:05	VVILGGLLV	0.9945	0.9057	0.862	483.51	0.5508	36.52	1/982	1/7748
SNV	Breast	TMEM175_A200G_4	HLA-B15:01	FAAGIFSLF	0.9921	0.9786	0.0201	430.16	0.4928	9.73	1/982	1/7748
SNV	Breast	TMEM175_A200G_4	HLA-C03:03	FAAGIFSL	1	0.9936	0.422	58.2	0.2178	9.73	1/982	1/7748
SNV	Breast	TMEM175_A200G_4	HLA-C03:03	FAAGIFSLF	0.9985	0.9924	0.0081	9.05	0.0761	9.73	1/982	1/7748
SNV	Breast	PTEN_M198K_1	HLA-B58:01	KMFETIPMF	0.9563	0.8512	0.1405	26.46	0.2296	17.71	1/982	1/7748
SNV	Breast	ZNF223_E201D_6	HLA-B58:01	RVHLGDKLF	0.9149	0.862	0.5149	149.31	0.4495	1.29	1/982	1/7748
SNV	Breast	KYNU_D413V_7	HLA-B35:01	FSVPNKVVF	0.9883	0.8053	0.0296	45.79	0.2375	2.08	1/982	1/7748
SNV	Breast	LDB3_A365V_10	HLA-B07:02	SPADSPRPQV	0.9921	0.5813	0.1886	26.59	0.1706	1.26	1/982	1/7748
SNV	Breast	MAP4K4_H151Y_1	HLA-C07:02	YRDIKGQNV	0.7774	0.9278	0.5513	47.52	0.1282	25.55	1/982	1/7748
SNV	Breast	MAP4K4_H151Y_1	HLA-C07:02	YRDIKGQNVL	0.9867	0.901	0.7124	150.95	0.2379	25.55	1/982	1/7748
SNV	Breast	RAB3GAP2_Q463E_4	HLA-B35:01	RVAEFLVIY	0.9744	0.9008	0.4432	213.69	0.3852	31.61	1/982	1/7748
SNV	Breast	RAB3GAP2_Q463E_5	HLA-C07:02	SRVAEFLVI	0.9682	0.9167	0.2943	263.83	0.3031	31.61	1/982	1/7748
SNV	Breast	WWC1_D669N_3	HLA-C07:02	KYNEKNKQF	0.8045	0.8842	0.0756	32.11	0.1018	26.85	1/982	1/7748
SNV	Breast	CD2AP_S483L_9	HLA-C12:03	VNFDDIASL	0.9373	0.9818	0.5118	122.02	0.5754	47.45	1/982	1/7748
SNV	Breast	CD2AP_S483L_3	HLA-C12:03	ASLENLLHL	0.9887	0.9832	0.0711	99.92	0.522	47.45	1/982	1/7748
SNV	Breast	MAP3K6_P127A_7	HLA-C12:03	SSSLVQASL	0.9844	0.9721	0.2075	177.8	0.6901	39.13	1/982	1/7748
SNV	Breast	MUS81_T416M_3	HLA-A02:01	LLMRGLQRL	0.9822	0.7526	0.256	12.56	0.177	19.65	1/982	1/7748
SNV	Breast	MUS81_T416M_9	HLA-C12:03	SAAYLALLM	0.9411	0.9548	0.1878	42.05	0.3381	19.65	1/982	1/7748
SNV	Breast	PSMA1_D100N_4	HLA-C12:03	FVFNRPLPV	0.9953	0.8801	0.0612	4.16	0.0449	57.05	1/982	1/7748
SNV	Breast	SBF2_K450N_1	HLA-C12:03	NMIKHVREL	0.997	0.9808	0.2566	119.42	0.5696	13.58	1/982	1/7748
SNV	Breast	ARHGEF26_R200W_7	HLA-B57:01	KAKDPEWGL	0.9011	0.9931	0.9439	349.46	0.4425	19.22	1/982	2/7748
SNV	Breast	ARHGEF26_R200W_7	HLA-B57:01	KAKDPEWGLF	0.9997	0.9946	0.2955	31.04	0.1951	19.22	1/982	2/7748
SNV	Breast	CARD8_L512Q_4	HLA-C05:01	KGDQALDVL	0.9998	0.8538	0.1109	484.3	0.3993	6.8	1/982	1/7748
SNV	Breast	LMTK2_S1461R_8	HLA-B57:01	PARSTEQRW	0.9782	0.8885	0.3478	31.99	0.1975	12.47	1/982	1/7748
SNV	Breast	CUL7_Q1692K_4	HLA-C03:03	TATKSFSTF	0.9949	0.9836	0.215	187.22	0.3523	48.99	1/982	1/7748
SNV	Breast	KIF26B_M1310I_2	HLA-B15:01	AIAEPVASEF	0.9999	0.9344	0.4	73.75	0.2584	14.56	1/982	1/7748
SNV	Breast	KIF26B_M1310I_1	HLA-C03:03	IAEPVASEF	0.9982	0.9904	0.1366	37.79	0.1807	14.56	1/982	1/7748
SNV	Breast	STARD5_V57E_1	HLA-A24:02	EYGTLEEVW	0.9912	0.7487	0.63	120.81	0.4792	2.1	1/982	1/7748
SNV	Breast	STARD5_V57E_9	HLA-B15:01	NLYRGEGIEY	0.9998	0.9344	0.2855	62.57	0.2421	2.1	1/982	1/7748
SNV	Breast	POLR3D_Q270E_5	HLA-A02:01	LLFLELPDTL	0.9802	0.6363	0.6029	249.35	0.5427	8.29	1/982	1/7748
SNV	Breast	SF1_M469I_1	HLA-A02:01	IMPPPPMGM	0.9452	0.6596	0.5996	182.38	0.4915	60.89	1/982	1/7748
SNV	Breast	SF1_M469I_9	HLA-C07:01	YRLHQGKGI	0.9731	0.579	0.1757	132.22	0.1004	60.89	1/982	1/7748
SNV	Breast	SF1_M469I_1	HLA-C05:01	IMPPPPMGM	0.5926	0.9791	0.1355	21.22	0.126	60.89	1/982	1/7748
SNV	Breast	ACTG1_M119T_5	HLA-B39:01	NREKTTQIM	0.9945	0.8441	0.2381	66.64	0.1428	4272.73	1/982	1/7748
SNV	Breast	MAP3K8_C166F_8	HLA-A30:01	KTKKRMAFK	0.9992	0.8104	0.0024	18.63	0.0114	7.37	1/982	1/7748
SNV	Breast	NRBF2_Q99E_5	HLA-A30:01	AAHLETSHK	0.9922	0.9229	0.0522	471.55	0.1695	30.6	1/982	1/7748
SNV	Breast	PACS1_R203W_1	HLA-C12:03	WTILGYKTL	0.7228	0.9895	0.7788	130.66	0.5937	28.63	1/982	1/7748
SNV	Breast	RAB2A_A182V_9	HLA-C12:03	GVFDINNEV	0.917	0.9759	0.575	27	0.2562	103.21	1/982	1/7748
SNV	Breast	AAK1_G209R_8	HLA-A02:01	FQNPQTERV	0.992	0.7026	0.5933	111.19	0.4069	13.14	1/982	1/7748
SNV	Breast	C21orf59_A18T_5	HLA-A02:01	FLLQTPGSTEL	0.9933	0.5304	0.613	9.48	0.1544	5.66	1/982	1/7748
SNV	Breast	MCF2L_Q769H_7	HLA-A02:01	YLLKPVHRI	0.9913	0.7075	0.0556	1.37	0.0162	4.96	1/982	1/7748
SNV	Breast	MCF2L_Q769H_1	HLA-B08:01	HRITKYQLL	0.7102	0.5235	0.4793	489.51	0.3308	4.96	1/982	1/7748
SNV	Breast	MCF2L_Q769H_1	HLA-C07:02	HRITKYQLL	0.9842	0.9644	0.0181	6.71	0.0317	4.96	1/982	1/7748
SNV	Breast	MCF2L_Q769H_1	HLA-C07:01	HRITKYQLL	0.9989	0.7854	0.0177	6.81	0.0124	4.96	1/982	1/7748
SNV	Breast	MUC16_R8882Q_4	HLA-B08:01	SPLQVTSL	0.9052	0.5836	0.6536	146.16	0.2058	39.55	1/982	1/7748
SNV	Breast	TOR1AIP1_V74M_1	HLA-B08:01	MAKERSPV	0.9998	0.6184	0.435	235.31	0.247	16.03	1/982	1/7748
SNV	Breast	TOR1AIP1_V74M_9	HLA-C07:02	VYGDFEPLM	0.7741	0.9752	0.1325	145.7	0.2341	16.03	1/982	1/7748
SNV	Breast	ATP10A_D648N_8	HLA-B42:01	FPSTPSSNGM	0.6479	0.5973	0.133	156.25	0.3729	11.67	1/982	1/7748
SNV	Breast	CCDC88A_E268K_7	HLA-A30:01	RLRQELKEK	0.9973	0.9177	0.1744	132.6	0.0672	7.11	1/982	1/7748
SNV	Breast	CD200_T218R_3	HLA-A30:01	GTRSVTSIL	0.9683	0.8289	0.1356	287.14	0.1152	20.53	1/982	1/7748
SNV	Breast	CD200_T218R_6	HLA-B42:01	HPNGTRSV	0.9902	0.613	0.6301	211.69	0.4074	20.53	1/982	1/7748
SNV	Breast	CD200_T218R_6	HLA-B42:01	HPNGTRSVTSI	0.9987	0.6927	0.2008	474.72	0.5349	20.53	1/982	1/7748
SNV	Breast	CRMP1_I279V_5	HLA-C17:01	FGEPVAASL	0.8166	0.9506	0.1711	197.26	0.3017	11.91	1/982	1/7748
SNV	Breast	EFNA3_S216I_7	HLA-A30:01	KSISGTIPK	0.9988	0.5661	0.0039	26.96	0.0148	38.82	1/982	1/7748
SNV	Breast	EGF_R1195S_7	HLA-B42:01	NPLWQQSAL	0.7983	0.8035	0.0234	3.08	0.0619	5.91	1/982	1/7748
SNV	Breast	EGF_R1195S_1	HLA-C17:01	SALDPPHQM	0.8895	0.9653	0.013	77.11	0.1775	5.91	1/982	1/7748
SNV	Breast	F5_R2215P_6	HLA-C17:01	QSIALPLEL	0.8754	0.969	0.3229	394.9	0.4261	1.56	1/982	1/7748
SNV	Breast	FGD4_H344Y_1	HLA-C17:01	YMLEPVQRI	0.6054	0.766	0.0965	7.43	0.0267	3.82	1/982	1/7748
SNV	Breast	FOSB_D328N_1	HLA-B42:01	NPLNSPSLLAL	0.9617	0.5189	0.2226	466.37	0.5319	38.76	1/982	1/7748
SNV	Breast	FOXP4_L422V_9	HLA-C17:01	SAAAPVTPV	0.9785	0.9892	0.1166	292.39	0.3685	94.07	1/982	1/7748
SNV	Breast	HNRNPL_I520M_9	HLA-C17:01	VTEENFFEM	0.6346	0.7728	0.3409	111.67	0.2251	88.41	1/982	1/7748
SNV	Breast	IQGAP1_V1076G_4	HLA-B42:01	APVGKEIM	0.9741	0.6324	0.6596	335.1	0.4784	94.95	1/982	1/7748
SNV	Breast	ITGB7_E469D_8	HLA-C17:01	FSEELIVDL	0.5712	0.6722	0.2491	417.61	0.4389	4.34	1/982	1/7748
SNV	Breast	LRIG2_L409V_9	HLA-A30:01	ITKKAFIGV	0.9953	0.8863	0.179	299.29	0.118	5.95	1/982	1/7748
SNV	Breast	MARC1_Q194E_4	HLA-B42:01	RPHEIADL	0.8231	0.5344	0.4612	141.72	0.3626	3.15	1/982	1/7748
SNV	Breast	NCOA5_E214D_3	HLA-C17:01	YADSVGRKV	0.8036	0.7931	0.0204	14.17	0.0503	64.4	1/982	1/7748
SNV	Breast	NRG2_E199A_3	HLA-C17:01	FLAPTEQPL	0.9169	0.9874	0.07	49.87	0.1371	1.74	1/982	1/7748
SNV	Breast	PON3_L310W_6	HLA-A30:01	RIQNVWSEK	0.995	0.8664	0.0219	127.84	0.0649	9.78	1/982	1/7748
SNV	Breast	RAF1_S605F_10	HLA-B42:01	RPLFPQILSF	0.7943	0.7006	0.2988	14.96	0.1538	41.39	1/982	1/7748
SNV	Breast	RAF1_S605F_1	HLA-C17:01	FIELLQHSL	0.8125	0.9662	0.1923	347.63	0.3978	41.39	1/982	1/7748
SNV	Breast	SLITRK6_Q323H_10	HLA-B42:01	IPYITKPSTHL	0.986	0.8003	0.482	172.53	0.3834	2.28	1/982	1/7748
SNV	Breast	TBL2_A189S_7	HLA-B42:01	FPKKHKSPV	0.996	0.5554	0.0056	37.21	0.2315	41.25	1/982	1/7748
SNV	Breast	ZFHX2_P1129A_9	HLA-B42:01	QPPSPAPSAV	0.786	0.7376	0.1831	383.65	0.4992	1.69	1/982	1/7748
SNV	Breast	ZNF468_K362R_1	HLA-A30:01	RVFNRLSTL	0.9933	0.926	0.05	55.82	0.0277	11.91	1/982	1/7748
SNV	Breast	ZNF468_K362R_1	HLA-B42:01	RVFNRLSTL	0.991	0.5347	0.1988	52.15	0.2594	11.91	1/982	1/7748
SNV	Breast	ZNF468_K362R_1	HLA-C17:01	RVFNRLSTL	0.7865	0.9039	0.1318	49.39	0.1362	11.91	1/982	1/7748
SNV	Breast	C11orf95_D82Y_9	HLA-B15:01	ASSGRKYSY	0.9404	0.934	0.5464	322.84	0.444	7.1	1/982	1/7748
SNV	Breast	NAV1_R585H_8	HLA-C05:01	SSDAGRDHL	0.9999	0.927	0.0261	45.02	0.164	20.06	1/982	1/7748
SNV	Breast	USP34_N2187K_4	HLA-A02:01	YLFKDAEV	0.9939	0.5448	1.6035	186.04	0.4949	3.36	1/982	1/7748
SNV	Breast	COL17A1_M363I_1	HLA-B58:01	ITKDSGKVF	0.8039	0.834	0.3121	436.03	0.6315	1.43	1/982	1/7748
SNV	Breast	DENND3_R1128W_3	HLA-B58:01	MIWVKKQVW	0.9669	0.9763	0.1248	38.94	0.2701	6.72	1/982	1/7748
SNV	Breast	MCOLN1_S458F_9	HLA-C07:02	YHVKFRSLF	0.6749	0.9036	0.1136	49.41	0.1317	25.77	1/982	1/7748
SNV	Breast	POLR2E_A175V_1	HLA-B58:01	VGDPVARYF	0.8873	0.9359	0.4044	126.89	0.4262	96	1/982	1/7748
SNV	Breast	ATP6V0B_W39R_7	HLA-C07:02	FRFDVARF	0.9993	0.9597	0.3064	53.42	0.1387	155.3	1/982	1/7748
SNV	Breast	ATP6V0B_W39R_7	HLA-C07:02	FRFDVARFL	0.9207	0.9517	0.0027	2.26	0.0068	155.3	1/982	1/7748
SNV	Breast	ATP6V0B_W39R_6	HLA-C04:01	RFDVARFL	0.9999	0.8721	0.0251	184.62	0.096	155.3	1/982	1/7748
SNV	Breast	CCIN_D312E_4	HLA-A02:01	KLSEMPYRA	0.9959	0.7274	0.2478	10.25	0.1606	2.48	1/982	1/7748
SNV	Breast	GTPBP6_G443R_1	HLA-A02:01	RLQELKAEL	0.9967	0.7226	0.6927	38.7	0.2768	101.51	1/982	1/7748
SNV	Breast	HSD17B4_T615R_1	HLA-B07:02	RPSEGGKL	0.9982	0.6824	0.3335	27.06	0.1715	72.6	1/982	1/7748
SNV	Breast	KBTBD7_C456F_7	HLA-A02:01	KLKEVEFYSV	0.997	0.8117	0.5716	399.23	0.6258	5.72	1/982	1/7748
SNV	Breast	KIAA1109_P2511L_9	HLA-A02:01	NLPPLEFKL	0.9428	0.5025	0.6281	116.78	0.4153	7.41	1/982	1/7748
SNV	Breast	KIF15_I136N_5	HLA-C07:02	LRGVNPRSF	0.853	0.9754	0.1884	197.21	0.2683	8.99	1/982	1/7748
SNV	Breast	LAMA2_G2471V_9	HLA-C04:01	KADDKIYFV	0.9997	0.6252	0.0861	178.8	0.0937	8.41	1/982	1/7748
SNV	Breast	METTL13_Q371L_10	HLA-B07:02	APAGMPTQQL	0.9976	0.5861	0.0915	3.1	0.0536	57.17	1/982	1/7748
SNV	Breast	MFSD7_E66K_1	HLA-A02:01	KQINWLSLV	0.9914	0.5684	0.1166	56.81	0.3188	41.43	1/982	1/7748
SNV	Breast	NUP54_K464N_6	HLA-A02:01	LLREINQHL	0.9463	0.6454	0.4269	164.07	0.4734	26.9	1/982	1/7748
SNV	Breast	PCDHB2_E418K_4	HLA-C07:02	TRSKYNITI	0.9147	0.8607	0.2011	156.29	0.2417	1.47	1/982	1/7748
SNV	Breast	PKD1_A603S_5	HLA-C07:02	LRRPSQLRL	0.8021	0.8813	0.1925	44.7	0.1233	20.63	1/982	1/7748
SNV	Breast	ROBO1_A1247V_10	HLA-B07:02	GPTPPVRGAV	0.9967	0.6317	0.1814	34.21	0.1838	11.4	1/982	1/7748
SNV	Breast	SYNE1_Q2734E_4	HLA-A02:01	VISEWNDYV	0.9886	0.5033	0.054	37.62	0.2741	3.49	1/982	1/7748
SNV	Breast	TP53_L194R_8	HLA-A02:01	GLAPPQHRI	0.982	0.7542	0.6863	19.25	0.2142	86.95	3/982	8/7748
SNV	Breast	AREL1_Q524E_8	HLA-C05:01	ALFDTTNEL	0.9717	0.9653	0.2198	25.49	0.1345	17.7	1/982	1/7748
SNV	Breast	AREL1_Q524E_7	HLA-C05:01	LFDTTNELF	0.9972	0.9363	0.2356	94.59	0.2164	17.7	1/982	1/7748
SNV	Breast	ARFRP1_L34M_2	HLA-C05:01	FMEQSKTRF	0.9981	0.9198	0.4176	162.92	0.2651	30.16	1/982	1/7748
SNV	Breast	ATP6V0C_S20L_6	HLA-A02:05	AVMGALAAM	0.9612	0.6552	0.3141	23.74	0.1332	112.29	1/982	1/7748
SNV	Breast	ATP6V0C_S20L_2	HLA-A02:05	ALAAMVFSA	0.9922	0.565	0.1695	126.44	0.28	112.29	1/982	1/7748
SNV	Breast	ATP6V0C_S20L_6	HLA-A02:05	AVMGALAAMV	0.9969	0.7532	0.1755	242.52	0.3746	112.29	1/982	1/7748
SNV	Breast	ATP6V0C_S20L_6	HLA-A02:01	AVMGALAAM	0.9255	0.5154	0.555	441.12	0.6478	112.29	1/982	1/7748
SNV	Breast	C11orf84_R170K_1	HLA-A02:01	KMPAEIVVL	0.9655	0.5706	0.362	74.14	0.353	19.57	1/982	1/7748
SNV	Breast	C11orf84_R170K_1	HLA-A02:01	KMPAEIVVLL	0.9774	0.562	0.568	29.95	0.2518	19.57	1/982	1/7748
SNV	Breast	C2orf54_E90K_5	HLA-C05:01	WVDAKALLI	0.9999	0.9765	0.0684	2.74	0.0366	6.86	1/982	1/7748
SNV	Breast	CCHCR1_L702F_3	HLA-A02:05	RLFTVLPSL	0.9876	0.6998	0.135	26.38	0.1409	36.92	1/982	1/7748
SNV	Breast	CCHCR1_L702F_3	HLA-A02:01	RLFTVLPSL	0.9836	0.7257	0.0296	2.45	0.0547	36.92	1/982	1/7748
SNV	Breast	CCHCR1_L702F_9	HLA-C07:01	SRYKQQRLF	0.9974	0.5948	0.0149	11.98	0.0239	36.92	1/982	1/7748
SNV	Breast	CEP152_G1650E_5	HLA-A02:05	YLEPEKISV	0.9906	0.6649	0.6031	21.16	0.1248	1.55	1/982	1/7748
SNV	Breast	CEP152_G1650E_5	HLA-A02:01	YLEPEKISV	0.9948	0.8421	0.3887	2.22	0.0504	1.55	1/982	1/7748
SNV	Breast	CEP152_G1650E_5	HLA-C05:01	YLEPEKISV	0.9999	0.9563	0.0968	2.75	0.0368	1.55	1/982	1/7748
SNV	Breast	CHCHD3_E196Q_3	HLA-C07:01	YRQNTHQTL	0.9992	0.7185	0.0118	3.26	0.007	46.95	1/982	1/7748
SNV	Breast	CHMP2A_D149N_8	HLA-A02:05	MMNDAIDNA	0.9824	0.8475	0.1324	19	0.1163	323.19	1/982	1/7748
SNV	Breast	CHMP2A_D149N_8	HLA-A02:01	MMNDAIDNA	0.9759	0.7164	0.288	61.92	0.3299	323.19	1/982	1/7748
SNV	Breast	CHORDC1_D287N_7	HLA-A02:01	KLWGVINV	0.9974	0.8634	1.1607	24.95	0.2361	6.16	1/982	1/7748
SNV	Breast	CIT_H213Y_8	HLA-A02:05	ILAVHSVYL	0.9937	0.8973	0.1108	15.43	0.1	2.57	1/982	1/7748
SNV	Breast	CIT_H213Y_8	HLA-A02:01	ILAVHSVYL	0.9877	0.8286	0.1509	3.19	0.0702	2.57	1/982	1/7748
SNV	Breast	CIT_H213Y_8	HLA-C05:01	ILAVHSVYL	0.9258	0.9822	0.8816	90.02	0.2124	2.57	1/982	1/7748
SNV	Breast	CLPX_E359K_4	HLA-C05:01	FLDKVDKI	0.9999	0.9561	0.049	319.91	0.3469	17.56	1/982	1/7748
SNV	Breast	COG5_N498K_7	HLA-A02:05	RLFDPIKLV	0.9974	0.5077	0.0663	6.11	0.0523	13.17	1/982	1/7748
SNV	Breast	COG5_N498K_7	HLA-A02:01	RLFDPIKL	0.992	0.5201	1.5309	102.46	0.3946	13.17	1/982	1/7748
SNV	Breast	COG5_N498K_7	HLA-A02:01	RLFDPIKLV	0.998	0.5942	0.0876	1.53	0.025	13.17	1/982	1/7748
SNV	Breast	COG5_N498K_8	HLA-C07:01	SRLFDPIKL	0.9993	0.7606	0.0569	62.9	0.0726	13.17	1/982	1/7748
SNV	Breast	COG5_N498K_7	HLA-C05:01	RLFDPIKLV	0.9939	0.9685	0.9227	251.06	0.3163	13.17	1/982	1/7748
SNV	Breast	COG5_N498K_6	HLA-C05:01	LFDPIKLVF	0.998	0.8728	0.2627	14.49	0.1082	13.17	1/982	1/7748
SNV	Breast	COG5_N498K_7	HLA-C05:01	RLFDPIKLVF	0.9996	0.948	1.1821	30.83	0.1432	13.17	1/982	1/7748
SNV	Breast	DLG1_F478L_9	HLA-C07:01	HRGSTGLGL	0.9809	0.8212	0.1841	136.15	0.1015	16.94	1/982	1/7748
SNV	Breast	DYNC1H1_E1639Q_8	HLA-C05:01	VGDEDLLQI	0.9998	0.9503	0.0454	46.04	0.1653	56.77	1/982	1/7748
SNV	Breast	DYNC1H1_E1639Q_9	HLA-C05:01	FVGDEDLLQI	0.9997	0.9525	0.4	36.64	0.1515	56.77	1/982	1/7748
SNV	Breast	ESF1_E345K_4	HLA-C05:01	RADKITRRL	0.9998	0.9264	0.0341	4.89	0.0557	21.9	1/982	1/7748
SNV	Breast	FDFT1_A68V_9	HLA-A02:05	ALDGEMRNV	0.9907	0.819	1.3441	155.92	0.3081	84.32	1/982	1/7748
SNV	Breast	FDFT1_A68V_9	HLA-A02:01	ALDGEMRNV	0.9921	0.7906	0.6655	5.95	0.117	84.32	1/982	1/7748
SNV	Breast	FDFT1_A68V_9	HLA-C05:01	ALDGEMRNV	0.9999	0.9843	0.1133	65.04	0.188	84.32	1/982	1/7748
SNV	Breast	HMCN1_E5574K_5	HLA-A02:05	LMVDKEQTV	0.9987	0.5269	0.0521	109	0.2611	2	1/982	1/7748
SNV	Breast	HMCN1_E5574K_6	HLA-A02:05	FLMVDKEQTV	0.9987	0.5732	0.1108	47.12	0.182	2	1/982	1/7748
SNV	Breast	IGKV3D-20_E102K_5	HLA-A02:01	RLEPKDFAV	0.9823	0.7628	0.3495	12.01	0.1733	30.07	1/982	1/7748
SNV	Breast	IGKV3D-20_E102K_5	HLA-C05:01	RLEPKDFAV	0.9998	0.9843	0.7501	25.37	0.1343	30.07	1/982	1/7748
SNV	Breast	IPPK_I335M_4	HLA-A02:01	LLDMEGLYPL	0.9945	0.5869	0.6242	100.33	0.3919	2.02	1/982	1/7748
SNV	Breast	IPPK_I335M_4	HLA-C05:01	LLDMEGLYPL	0.9999	0.9628	0.8064	339.17	0.3543	2.02	1/982	1/7748
SNV	Breast	KIAA1671_S516L_9	HLA-C05:01	SADLTKLFL	0.9999	0.8652	0.017	3.66	0.0453	6.66	1/982	1/7748
SNV	Breast	KIFC3_E204Q_8	HLA-A02:05	MLSELNLQV	0.9994	0.8429	0.003	3.77	0.031	8.35	1/982	1/7748
SNV	Breast	KIFC3_E204Q_8	HLA-A02:01	MLSELNLQV	0.9993	0.7874	0.0088	1.37	0.0162	8.35	1/982	1/7748
SNV	Breast	KIFC3_E204Q_9	HLA-A02:01	GMLSELNLQV	0.9986	0.7	0.2478	24.08	0.2331	8.35	1/982	1/7748
SNV	Breast	KIFC3_E204Q_8	HLA-C05:01	MLSELNLQV	0.9992	0.9773	0.3564	35.88	0.1502	8.35	1/982	1/7748
SNV	Breast	KRT18_E276Q_4	HLA-A02:05	QQIQESTTV	0.9279	0.6345	0.8581	206.71	0.3506	1365.89	1/982	1/7748
SNV	Breast	LRP12_R526K_6	HLA-C07:01	LRMFEKRSF	0.995	0.5034	0.1086	229.79	0.121	1.72	1/982	1/7748
SNV	Breast	MADD_D26H_7	HLA-C07:01	ARHPSSHSV	0.9883	0.7512	0.0425	80.23	0.079	26.88	1/982	1/7748
SNV	Breast	MCF2L_R185T_2	HLA-C05:01	NTDDFKMKV	0.9999	0.9357	0.0454	9.26	0.0842	7.41	1/982	1/7748
SNV	Breast	MUC16_R13875K_4	HLA-C05:01	GLDKEQLYL	0.9999	0.9129	0.0684	2.29	0.0305	1.02	1/982	1/7748
SNV	Breast	NCAPD2_M644I_1	HLA-C05:01	IMYENTTTV	0.9722	0.975	0.6879	59	0.1811	16.12	1/982	1/7748
SNV	Breast	PKP3_R442K_4	HLA-A02:05	RLAKDTLEQL	0.9919	0.6107	0.9473	100.53	0.2507	63.27	1/982	1/7748
SNV	Breast	PKP3_R442K_4	HLA-A02:01	RLAKDTLEQL	0.9754	0.6681	0.7194	120.29	0.4203	63.27	1/982	2/7748
SNV	Breast	PRKAG1_E195K_8	HLA-A02:05	FMSKSLEKL	0.9964	0.5904	0.0081	7.56	0.0638	48.84	1/982	1/7748
SNV	Breast	PTBP1_E347K_1	HLA-C07:01	KRVTPQSLF	0.9984	0.5678	0.0456	100.96	0.0875	130.97	1/982	1/7748
SNV	Breast	RASAL2_E805K_7	HLA-C05:01	SIDSSLKNL	1	0.8807	0.018	123.46	0.2381	4.27	1/982	1/7748
SNV	Breast	RHBDD1_R98T_4	HLA-B44:02	LERTLGSRW	0.9922	0.649	0.0436	3.68	0.0618	15.87	1/982	1/7748
SNV	Breast	SIMC1_E519K_7	HLA-A02:01	ILLSGSKTV	0.9499	0.6106	0.2931	13.38	0.1826	4.09	1/982	1/7748
SNV	Breast	SLC12A8_R653W_5	HLA-C07:01	FRWMWSLLL	0.9918	0.916	0.0375	174.41	0.1108	13.57	1/982	1/7748
SNV	Breast	SRA1_E190K_8	HLA-A02:05	LMVDHVTKV	0.9993	0.5547	0.0013	2.56	0.016	56.59	1/982	1/7748
SNV	Breast	SRA1_E190K_9	HLA-A02:05	SLMVDHVTKV	0.9986	0.6195	0.106	23	0.1309	56.59	1/982	1/7748
SNV	Breast	SRA1_E190K_1	HLA-A02:01	KVSQWMVGV	0.977	0.5314	0.0764	96.89	0.3875	56.59	1/982	1/7748
SNV	Breast	SRA1_E190K_9	HLA-A02:01	SLMVDHVTKV	0.9975	0.591	0.1881	2.07	0.0467	56.59	1/982	1/7748
SNV	Breast	TAF1_P1538S_2	HLA-C05:01	VSDYYKVIV	0.9998	0.8894	0.1501	63.24	0.186	6.26	1/982	1/7748
SNV	Breast	TARBP1_S1469L_2	HLA-A02:05	ALLIDKPTNL	0.9818	0.5457	1.5851	441.88	0.4834	23.9	1/982	1/7748
SNV	Breast	TARBP1_S1469L_1	HLA-A02:01	LLIDKPTNL	0.9975	0.6078	0.2691	1.51	0.0235	23.9	1/982	1/7748
SNV	Breast	TARBP1_S1469L_2	HLA-A02:01	ALLIDKPTNL	0.9839	0.6497	0.8791	48.42	0.2987	23.9	1/982	1/7748
SNV	Breast	TARBP1_S1469L_8	HLA-C07:01	SRLIVVALL	0.9991	0.7166	0.0676	77.98	0.0782	23.9	1/982	1/7748
SNV	Breast	TARBP1_S1469L_1	HLA-C05:01	LLIDKPTNL	0.9995	0.8918	0.2356	136.12	0.246	23.9	1/982	1/7748
SNV	Breast	THAP10_Q242H_1	HLA-C05:01	HSDLSYMAV	0.9999	0.9688	0.051	6.23	0.0673	4.64	1/982	1/7748
SNV	Breast	TMEM136_G157E_3	HLA-C05:01	FTEDVVDFL	0.9996	0.9574	0.0726	2.92	0.0388	9.36	1/982	1/7748
SNV	Breast	TMEM184B_F86L_9	HLA-C07:01	QRYIVRILL	0.9995	0.7361	0.0876	19.12	0.0367	42.6	1/982	1/7748
SNV	Breast	TOP3A_Q227H_3	HLA-A02:05	RLHRIFPEV	0.997	0.6637	0.1776	280.34	0.3965	13.61	1/982	1/7748
SNV	Breast	TOP3A_Q227H_3	HLA-A02:01	RLHRIFPEV	0.9947	0.8084	0.0669	8.53	0.1458	13.61	1/982	1/7748
SNV	Breast	TRMT1_S514L_3	HLA-A02:01	RLLETSPAF	0.8417	0.694	1.1725	117.46	0.4162	34.93	1/982	1/7748
SNV	Breast	UBC_R378T_4	HLA-C07:01	LRLTGGMQI	0.9904	0.6907	0.1348	80.24	0.079	529.47	1/982	1/7748
SNV	Breast	URB1_K1543N_5	HLA-C05:01	VLDQNILL	1	0.9392	0.0341	18.73	0.1202	8.15	1/982	1/7748
SNV	Breast	URB1_K1543N_6	HLA-C05:01	SVLDQNILL	0.9973	0.8905	0.5301	115.13	0.2324	8.15	1/982	1/7748
SNV	Breast	URB1_K1543N_5	HLA-C05:01	VLDQNILLL	0.9999	0.9001	0.0013	1.15	0.0052	8.15	1/982	1/7748
SNV	Breast	URB1_K1543N_6	HLA-C05:01	SVLDQNILLL	0.9995	0.8656	1.452	79.33	0.2021	8.15	1/982	1/7748
SNV	Breast	URB1_K1543N_5	HLA-C05:01	VLDQNILLLL	0.9999	0.8446	0.0649	60.69	0.1831	8.15	1/982	1/7748
SNV	Breast	VPS13C_D1874H_6	HLA-A02:05	ALSEDHLTV	0.9984	0.5253	0.0716	5.31	0.0434	5.03	1/982	1/7748
SNV	Breast	VPS13C_D1874H_6	HLA-A02:01	ALSEDHLTV	0.9983	0.74	0.0861	1.83	0.04	5.03	1/982	1/7748
SNV	Breast	VPS13C_D1874H_7	HLA-A02:01	VALSEDHLTV	0.927	0.7317	1.5467	167.69	0.4772	5.03	1/982	1/7748
SNV	Breast	VPS13C_D1874H_6	HLA-A02:01	ALSEDHLTVL	0.9846	0.7575	0.6827	289.96	0.5671	5.03	1/982	1/7748
SNV	Breast	VPS13C_D1874H_6	HLA-C05:01	ALSEDHLTV	0.9995	0.9797	0.5549	50.84	0.1713	5.03	1/982	1/7748
SNV	Breast	VPS13C_D1874H_5	HLA-C05:01	LSEDHLTVL	0.9999	0.9373	0.0261	22.36	0.1284	5.03	1/982	1/7748
SNV	Breast	XPO6_F125L_2	HLA-A02:01	MLYHDFFTNI	0.9971	0.5999	0.0775	297.28	0.5712	61.77	1/982	1/7748
SNV	Breast	XPO6_F125L_8	HLA-C07:01	GRQDWPMLY	0.9956	0.7436	0.0592	8.92	0.0159	61.77	1/982	1/7748
SNV	Breast	ZNF239_S248L_2	HLA-A02:05	SLSLLIHQA	0.9722	0.6542	0.1755	477.02	0.4982	19.65	1/982	1/7748
SNV	Breast	ZNF239_S248L_2	HLA-A02:01	SLSLLIHQA	0.9438	0.6554	0.2023	261.16	0.5502	19.65	1/982	1/7748
SNV	Breast	EPB41L2_R663C_6	HLA-B58:01	STPEPCPNEW	0.9913	0.9744	0.1994	82.77	0.3679	9.64	1/982	1/7748
SNV	Breast	NTM_R213W_8	HLA-A33:03	DVAAPVVWR	0.8204	0.7084	0.4444	38.65	0.0471	12.69	1/982	1/7748
SNV	Breast	NTM_R213W_7	HLA-B58:01	VAAPVVWRV	0.9222	0.9657	0.4368	57.72	0.3206	12.69	1/982	1/7748
SNV	Breast	NTM_R213W_11	HLA-B58:01	ASNDVAAPVVW	0.9997	0.9669	0.1613	5.76	0.098	12.69	1/982	1/7748
SNV	Breast	NTM_R213W_1	HLA-C07:01	WRVKVTVNY	0.988	0.545	0.221	448.6	0.167	12.69	1/982	2/7748
SNV	Breast	NTM_R213W_7	HLA-C03:04	VAAPVVWRV	0.9783	0.9861	0.7675	379.95	0.4582	12.69	1/982	2/7748
SNV	Breast	TIMM44_D442N_8	HLA-C03:04	YAAWRLLNI	0.998	0.9942	0.1739	271.02	0.4035	38.77	1/982	1/7748
SNV	Breast	TP53_R342P_7	HLA-C07:01	ERFEMFPEL	0.9991	0.5618	0.0851	73.13	0.0765	179.53	1/982	1/7748
SNV	Breast	HELZ_P540R_6	HLA-A02:01	YLLPVRKQKL	0.9382	0.6312	1.0546	441.59	0.648	10.05	1/982	1/7748
SNV	Breast	MGAT5_A248T_5	HLA-A02:01	RMADTWIQA	0.9919	0.5744	0.1354	52.61	0.3089	10.91	1/982	2/7748
SNV	Breast	MRPL32_R17W_9	HLA-B58:02	VVSPWSAAW	0.9818	0.9798	0.013	481.7	0.0512	52.17	1/982	1/7748
SNV	Breast	MYH7B_K811N_7	HLA-C07:01	YQFGHTNVF	0.9389	0.812	0.0077	222.11	0.1198	12.66	1/982	1/7748
SNV	Breast	MYH7B_K811N_7	HLA-C06:02	YQFGHTNVF	0.946	0.9927	0.0069	106.79	0.0991	12.66	1/982	1/7748
SNV	Breast	OXR1_R662H_7	HLA-A02:01	SVAEYHHRI	0.9072	0.6849	0.7225	486.01	0.6692	10.99	1/982	1/7748
SNV	Breast	SEMA4C_E336D_5	HLA-A02:01	YQLEDIQRV	0.9961	0.7045	0.217	1.9	0.0422	54.52	1/982	1/7748
SNV	Breast	SLC9A3R1_R198G_7	HLA-A02:01	GLRAQDGIVEV	0.9556	0.5523	1.1607	6.22	0.1202	2186.12	1/982	1/7748
SNV	Breast	STRADB_H182Y_1	HLA-C07:01	YRSIKASHI	0.992	0.5367	0.2061	71.99	0.0761	7.54	1/982	1/7748
SNV	Breast	TNRC6C_I1377M_1	HLA-B58:02	MSNGSSINW	0.9987	0.7892	0.0125	39.38	0.0106	5.96	1/982	1/7748
SNV	Breast	AMMECR1L_V280M_6	HLA-C07:01	YRSEKMTISY	0.9982	0.6913	0.2459	255.01	0.1249	18.26	1/982	1/7748
SNV	Breast	CPSF1_Y189C_5	HLA-A02:01	FLPSCIIDV	0.9829	0.624	0.047	42.55	0.2861	62.06	1/982	1/7748
SNV	Breast	MICAL2_R622L_2	HLA-A02:01	FLGTPLRPV	0.9944	0.8918	0.132	23.85	0.2323	1.35	1/982	1/7748
SNV	Breast	PALLD_V452M_2	HLA-A02:01	AMAEGQVVV	0.9978	0.6043	0.1509	2.17	0.0494	27.74	1/982	1/7748
SNV	Breast	PALLD_V452M_2	HLA-A02:01	AMAEGQVVVL	0.9962	0.6897	0.6755	44.82	0.2912	27.74	1/982	1/7748
SNV	Breast	PALLD_V452M_1	HLA-B53:01	MAEGQVVVL	0.7952	0.5119	0.5645	434.13	0.3073	27.74	1/982	1/7748
SNV	Breast	TP53_I195T_9	HLA-A02:01	GLAPPQHLTRV	0.9944	0.7346	0.9333	232.61	0.5314	113.46	2/982	4/7748
SNV	Breast	TP53_I195T_1	HLA-C07:01	TRVEGNLRV	0.8846	0.8875	0.2414	181.5	0.1122	113.46	1/982	4/7748
SNV	Breast	TXNDC11_F667V_9	HLA-A02:01	TLESFIQNV	0.9941	0.5572	0.5138	14.59	0.1903	75.66	1/982	1/7748
SNV	Breast	ACACA_Q1350K_3	HLA-C03:04	FTKQNKATL	0.9883	0.9813	0.0984	60.38	0.2217	7.17	1/982	1/7748
SNV	Breast	ACACA_Q1350K_3	HLA-C03:03	FTKQNKATL	0.9883	0.9813	0.0964	60.38	0.2217	7.17	1/982	1/7748
SNV	Breast	FAM98C_E156Q_4	HLA-C03:04	MVQQLDLTL	0.9974	0.9898	0.2055	46.71	0.1962	18.38	1/982	1/7748
SNV	Breast	FAM98C_E156Q_4	HLA-C03:03	MVQQLDLTL	0.9974	0.9898	0.1526	46.71	0.1962	18.38	1/982	1/7748
SNV	Breast	JUP_M180L_4	HLA-C03:04	RALLGSPQL	0.9948	0.979	0.1854	9.94	0.082	192.74	1/982	1/7748
SNV	Breast	JUP_M180L_4	HLA-C03:03	RALLGSPQL	0.9948	0.979	0.1883	9.94	0.082	192.74	1/982	1/7748
SNV	Breast	SIGLEC10_P192L_2	HLA-A02:01	KLTTSHFSV	0.9921	0.7042	0.0669	75.93	0.3561	8.54	1/982	1/7748
SNV	Breast	YY2_E21Q_1	HLA-A02:01	QLHDINVEPL	0.8553	0.563	1.1498	159.03	0.4681	1.23	1/982	1/7748
SNV	Breast	PTPRD_T1100M_1	HLA-C12:02	MAKTAPDVL	0.9453	0.9445	0.1549	463.4	0.4537	3.47	1/982	1/7748
SNV	Breast	WNK1_L374Q_4	HLA-C12:02	LATQKRASF	0.9038	0.9793	0.2195	499.41	0.4693	49.82	1/982	1/7748
SNV	Breast	AHNAK_E1981D_6	HLA-B15:03	KFKMPDMHF	0.5443	0.7294	1.6126	257.63	0.7803	53.83	1/982	1/7748
SNV	Breast	AHNAK_M966I_4	HLA-C04:01	EYDITVPKL	0.9986	0.6823	0.0281	5.9	0.0141	53.83	1/982	1/7748
SNV	Breast	APPL1_Q207H_4	HLA-B15:03	MQAHISFF	0.9719	0.6797	0.8037	78.99	0.5004	27.16	1/982	1/7748
SNV	Breast	APPL1_Q207H_5	HLA-B15:03	YMQAHISFF	0.9053	0.6131	0.0473	29.5	0.324	27.16	1/982	1/7748
SNV	Breast	CADPS2_D347H_8	HLA-B15:03	SQNSAFLHI	0.6631	0.6048	0.1931	75.74	0.493	3.85	1/982	1/7748
SNV	Breast	CDC23_D256V_6	HLA-C02:10	YQNLIVVGF	0.5463	0.9324	1.4396	438.03	0.4332	24.78	1/982	1/7748
SNV	Breast	CEP192_E1887Q_7	HLA-A68:02	TSNLILQGV	0.9882	0.6871	0.1211	177.53	0.2975	7.53	1/982	1/7748
SNV	Breast	CHDH_E471Q_2	HLA-B15:03	RQIFAQEAL	0.813	0.9311	0.0752	6.76	0.1289	18.73	1/982	1/7748
SNV	Breast	CHST11_E313K_4	HLA-B35:01	TTDKMTTEF	0.7588	0.9529	0.8169	456.09	0.4774	16.44	1/982	1/7748
SNV	Breast	GRAMD1A_T659M_5	HLA-A23:01	KFPQMATEW	0.972	0.6966	0.229	4.22	0.123	96.06	1/982	1/7748
SNV	Breast	HIST1H2BH_E77Q_2	HLA-B15:03	GQASRLAHY	0.7906	0.7169	0.0296	1.84	0.0229	9.96	1/982	1/7748
SNV	Breast	MICB_K175E_4	HLA-B35:01	DAMETKTHY	0.9974	0.8321	0.0478	2.43	0.0472	9.03	1/982	1/7748
SNV	Breast	NEBL_S281L_9	HLA-B15:03	IQNMHDPVL	0.6951	0.7056	0.3458	9.7	0.1613	8.99	1/982	1/7748
SNV	Breast	NEBL_S281L_2	HLA-C04:01	VLDLPNLLF	0.9994	0.6996	0.0765	15.46	0.032	8.99	1/982	1/7748
SNV	Breast	NLRP2_A441T_7	HLA-B15:03	SRFPQGTQL	0.7888	0.7882	0.76	8.28	0.1484	1.04	1/982	1/7748
SNV	Breast	NR4A1_S137W_1	HLA-B35:01	WAPSPSTPSF	0.9864	0.8815	0.3252	24.41	0.1893	15.14	1/982	1/7748
SNV	Breast	PALM_A326V_5	HLA-A68:02	DTITVELVV	0.9984	0.6343	0.1781	64.07	0.1796	2.13	1/982	1/7748
SNV	Breast	PALM_A326V_7	HLA-C04:01	LQDTITVEL	0.9999	0.9105	0.0423	392.99	0.1371	2.13	1/982	1/7748
SNV	Breast	PARP10_M352I_9	HLA-B15:03	GQAEQVSSI	0.6216	0.8058	0.6556	80.87	0.5054	136.32	1/982	1/7748
SNV	Breast	PGM1_I77M_9	HLA-B35:01	EAIQLIARM	0.9962	0.7284	0.4705	68.44	0.2722	81.51	1/982	1/7748
SNV	Breast	RAD54B_E533G_4	HLA-B15:03	RTQGIINKY	0.872	0.5125	0.6673	88.62	0.5247	2.43	1/982	1/7748
SNV	Breast	SCAF8_V1230I_1	HLA-B15:03	IQNDPELY	0.9345	0.6158	1.5141	61.41	0.4565	13	1/982	1/7748
SNV	Breast	SCAF8_V1230I_3	HLA-B35:01	IPIQNDPEL	0.9949	0.8812	0.1797	3.37	0.0654	13	1/982	1/7748
SNV	Breast	SCAF8_V1230I_3	HLA-B35:01	IPIQNDPELY	0.9963	0.7907	0.1238	2.51	0.0488	13	1/982	1/7748
SNV	Breast	SEPT7_V40L_8	HLA-B15:03	FANLPNQLY	0.9675	0.8093	0.141	43.01	0.3941	48.46	1/982	1/7748
SNV	Breast	SEPT7_V40L_8	HLA-B35:01	FANLPNQLY	0.9983	0.9036	0.0136	1.69	0.0291	48.46	1/982	1/7748
SNV	Breast	SLC22A18_D9Y_3	HLA-B15:03	YQGRSPGRM	0.5198	0.5811	0.8037	174.84	0.6856	6.55	1/982	1/7748
SNV	Breast	SMG1_H2036Y_9	HLA-B15:03	TAAPAETPY	0.8357	0.8964	0.3023	87.7	0.5225	10.47	1/982	1/7748
SNV	Breast	SMG1_H2036Y_9	HLA-B35:01	TAAPAETPY	0.9948	0.9465	0.016	1.53	0.0237	10.47	1/982	1/7748
SNV	Breast	ST3GAL6_E273K_1	HLA-B15:03	KVHLAGFKY	0.7096	0.6639	0.3104	143.96	0.634	4.55	1/982	1/7748
SNV	Breast	STX10_E101K_8	HLA-B15:03	RMREAVQKM	0.8557	0.6151	0.2586	5.27	0.1039	167.85	1/982	1/7748
SNV	Breast	STX10_E101K_8	HLA-C02:10	RMREAVQKM	0.8805	0.9428	0.6029	110.22	0.1711	167.85	1/982	1/7748
SNV	Breast	THRA_M204I_1	HLA-B35:01	IPDGDKVDL	0.8593	0.7885	0.749	340.06	0.4404	10.72	1/982	1/7748
SNV	Breast	VAPB_L30V_9	HLA-A68:02	FTDVVTTNV	0.9874	0.5436	0.1251	13.26	0.0642	18.72	1/982	1/7748
SNV	Breast	ZNF561_N100D_1	HLA-B15:03	DQIFSGIQM	0.7568	0.9532	0.8679	280.55	0.8009	15.58	1/982	1/7748
SNV	Breast	ADPRH_Q224H_2	HLA-B39:01	FHTKWENYL	0.996	0.7218	0.009	31.79	0.0988	5.07	1/982	1/7748
SNV	Breast	ALMS1_E3712Q_2	HLA-B15:01	IQQIKFDKY	0.9969	0.779	0.2165	77.49	0.263	4.46	1/982	1/7748
SNV	Breast	ASB7_M307I_5	HLA-C12:03	IAKVIKDYL	0.8308	0.9481	0.5413	292.51	0.8696	7.95	1/982	1/7748
SNV	Breast	CLIP1_V1256I_6	HLA-B15:01	KLRNEITVL	0.9939	0.9818	0.6929	111.23	0.2963	13.9	1/982	1/7748
SNV	Breast	COL6A6_A178T_3	HLA-B15:01	AMTTSQFHF	0.9794	0.9312	0.0584	273.45	0.4158	1.23	1/982	1/7748
SNV	Breast	LPAR6_P214L_9	HLA-C03:04	MVLKTLTKL	0.9944	0.9905	0.2131	105.76	0.2803	16.53	1/982	1/7748
SNV	Breast	LPAR6_P214L_6	HLA-C03:04	KTLTKLVTL	0.9964	0.9864	0.4014	361.02	0.4499	16.53	1/982	1/7748
SNV	Breast	LPAR6_P214L_9	HLA-C12:03	MVLKTLTKL	0.9267	0.9704	0.3124	29.5	0.2735	16.53	1/982	1/7748
SNV	Breast	LPAR6_P214L_6	HLA-C12:03	KTLTKLVTL	0.9644	0.9672	0.252	37.77	0.3195	16.53	1/982	1/7748
SNV	Breast	MED15_R240G_5	HLA-B39:01	QQLQGIAQL	0.9824	0.9191	0.0811	55.27	0.1314	21.74	1/982	1/7748
SNV	Breast	PAN2_H879Y_9	HLA-B15:01	HIKVGETYY	0.9993	0.7502	0.1883	32.84	0.1777	6.73	1/982	1/7748
SNV	Breast	PAN2_H879Y_1	HLA-B15:01	YQRKEGVTH	0.9984	0.887	0.352	38.75	0.1922	6.73	1/982	1/7748
SNV	Breast	PCK1_T174R_2	HLA-B39:01	MRRMGTPVL	0.9859	0.9617	0.148	32.68	0.0998	1.52	1/982	1/7748
SNV	Breast	PCK1_T174R_7	HLA-C12:03	ASMRIMRRM	0.7967	0.9906	1.6035	235.9	0.7956	1.52	1/982	1/7748
SNV	Breast	PRKD1_P281S_4	HLA-B15:01	YTRSTVCQY	0.9986	0.6937	0.0933	117.57	0.302	1.64	1/982	1/7748
SNV	Breast	PRKD1_P281S_4	HLA-C12:03	YTRSTVCQY	0.5146	0.9178	0.1038	49.81	0.3676	1.64	1/982	1/7748
SNV	Breast	WHAMM_Q296E_3	HLA-B15:01	SIEDITVNY	0.8967	0.7672	0.7518	284.95	0.4228	8	1/982	1/7748
SNV	Breast	WHAMM_Q296E_4	HLA-B15:01	VSIEDITVNY	0.9995	0.7873	1.144	123.09	0.308	8	1/982	1/7748
SNV	Breast	CD6_A605T_4	HLA-B44:03	LELTGTQPAF	0.9932	0.9874	0.1409	431.5	0.3974	2.76	1/982	1/7748
SNV	Breast	EXO1_G799V_8	HLA-B44:03	NELWKNFVF	0.9969	0.931	0.0724	162.5	0.3207	14.13	1/982	1/7748
SNV	Breast	GSAP_D253N_6	HLA-B44:03	FEVPLNISL	0.852	0.9631	0.1074	199.95	0.337	12	1/982	1/7748
SNV	Breast	PIK3CA_E545A_5	HLA-B44:03	SEITAQEKDF	0.9983	0.8438	0.0655	2.75	0.0552	8.48	2/982	4/7748
SNV	Breast	PRR4_E26K_5	HLA-B35:01	DVNYKDFTF	0.9423	0.7789	1.5279	74.09	0.2794	1.49	1/982	1/7748
SNV	Breast	TCF7L2_P300L_5	HLA-A02:01	HMVPLHHTL	0.9623	0.5664	0.1895	63.12	0.3324	26.77	1/982	1/7748
SNV	Breast	DOCK8_A828T_7	HLA-A68:02	ESVVAITNSL	0.9947	0.6162	0.5873	133.02	0.2587	17.96	1/982	1/7748
SNV	Breast	DOCK8_A828T_6	HLA-C03:04	SVVAITNSL	0.9992	0.9916	0.0624	6.64	0.0608	17.96	1/982	1/7748
SNV	Breast	NBEAL2_A253T_2	HLA-A68:02	ETLVGAVHV	0.9982	0.7766	0.0535	9.06	0.0476	68.49	1/982	1/7748
SNV	Breast	NBEAL2_A253T_2	HLA-A68:02	ETLVGAVHVL	0.9764	0.6869	0.4316	209.65	0.3232	68.49	1/982	1/7748
SNV	Breast	NBEAL2_A253T_1	HLA-C03:04	TLVGAVHVL	0.9843	0.992	0.3653	82.75	0.2548	68.49	1/982	1/7748
SNV	Breast	HDLBP_G112V_4	HLA-B39:24	QRTVAHLEL	0.9995	0.7007	0.129	6.86	0.0657	136.61	1/982	1/7748
SNV	Breast	HDLBP_G112V_4	HLA-C07:01	QRTVAHLEL	0.9994	0.7047	0.1086	258.07	0.1258	136.61	1/982	1/7748
SNV	Breast	SAFB_E168K_6	HLA-B39:24	SRELVKGEM	0.9927	0.6377	0.5014	491.06	0.4572	75.81	1/982	1/7748
SNV	Breast	ABCA8_G144E_6	HLA-A02:02	FLLGHEMPA	0.9968	0.567	0.0462	15.2	0.3289	3.59	1/982	1/7748
SNV	Breast	ADAMTS7_R1029C_5	HLA-A02:02	HLAPCPSPA	0.9897	0.7067	0.2575	360.01	1.0447	4.3	1/982	1/7748
SNV	Breast	ATP7A_A1394P_2	HLA-B42:01	MPASSVSV	0.9812	0.8235	0.6974	84.27	0.3075	11.8	1/982	1/7748
SNV	Breast	ATP7A_A1394P_2	HLA-B42:01	MPASSVSVV	0.8836	0.8427	0.0371	3.36	0.0673	11.8	1/982	1/7748
SNV	Breast	ATP7A_A1394P_2	HLA-B42:01	MPASSVSVVL	0.9251	0.8519	0.0419	5.05	0.0858	11.8	1/982	1/7748
SNV	Breast	ATP7A_M1393I_2	HLA-A02:02	AIAASSVSV	0.995	0.5939	0.2223	14.74	0.3237	11.8	1/982	1/7748
SNV	Breast	ATP7A_M1393I_9	HLA-B42:01	QPWMGSAAI	0.7278	0.801	0.0261	2.41	0.0461	11.8	1/982	1/7748
SNV	Breast	CDK1_H126N_1	HLA-B14:01	NRDLKPQNL	0.9956	0.9127	0.1983	145.23	0.0424	39.55	1/982	1/7748
SNV	Breast	CLINT1_L489F_5	HLA-C08:02	SLDNFLPGM	0.9991	0.9724	0.094	345.52	0.119	62.93	1/982	1/7748
SNV	Breast	CLINT1_L489F_5	HLA-C17:01	SLDNFLPGM	0.5753	0.9161	0.0965	25.61	0.0785	62.93	1/982	1/7748
SNV	Breast	DCHS1_V420I_6	HLA-C17:01	STQDSIIYL	0.8115	0.6807	0.0404	10.22	0.0377	20.26	1/982	1/7748
SNV	Breast	DCHS1_V420I_5	HLA-C17:01	TQDSIIYLV	0.9455	0.7295	0.9554	178.66	0.2869	20.26	1/982	1/7748
SNV	Breast	FAM98C_L198V_7	HLA-A02:02	SLPPGSVQPL	0.9861	0.5312	0.7905	99.2	0.6812	17.25	1/982	1/7748
SNV	Breast	FAM98C_L198V_9	HLA-B42:01	QPSLPPGSV	0.7277	0.8094	0.0976	17.48	0.1685	17.25	1/982	1/7748
SNV	Breast	FAM98C_L198V_6	HLA-B42:01	LPPGSVQPL	0.7246	0.8299	0.0905	8.6	0.1155	17.25	1/982	1/7748
SNV	Breast	FOXD3_G269E_1	HLA-B42:01	EPYGRPYGL	0.9696	0.8018	0.0905	2.19	0.041	1.69	1/982	1/7748
SNV	Breast	HCLS1_G211S_8	HLA-C08:02	RVDKSAVSF	0.9995	0.9784	0.1106	27.42	0.0369	20.27	1/982	1/7748
SNV	Breast	HCLS1_G211S_8	HLA-C17:01	RVDKSAVSF	0.5685	0.797	0.2218	98.94	0.2113	20.27	1/982	1/7748
SNV	Breast	HDAC4_G390S_5	HLA-A02:02	SLFPSTHLT	0.9293	0.5588	0.1629	21.96	0.3913	4.34	1/982	1/7748
SNV	Breast	PLEKHG6_R618H_3	HLA-B42:01	DPHLTFSTL	0.8569	0.6464	0.0959	9.11	0.1184	13.31	1/982	1/7748
SNV	Breast	PLEKHG6_R618H_6	HLA-B14:01	LRRDPHLTF	0.8797	0.7727	0.3894	431.04	0.0797	13.31	1/982	1/7748
SNV	Breast	PLEKHG6_R618H_1	HLA-C17:01	HLTFSTLEL	0.6759	0.968	0.5059	327.15	0.3875	13.31	1/982	1/7748
SNV	Breast	RAI1_S1394Y_4	HLA-B42:01	LPTYGADPL	0.5051	0.7495	0.0835	122.79	0.3474	13.1	1/982	1/7748
SNV	Breast	RUNX1T1_P588L_11	HLA-B42:01	SPMDTPPAATL	0.9906	0.7379	0.054	3.19	0.0641	1.98	1/982	1/7748
SNV	Breast	SEMA3C_S94T_7	HLA-C17:01	SVFWPATTI	0.5963	0.9862	0.1505	48.95	0.1354	123.95	1/982	1/7748
SNV	Breast	SGSM1_V730L_2	HLA-C17:01	QLFESVDEV	0.5108	0.9528	1.0706	377.21	0.4157	1.29	1/982	1/7748
SNV	Breast	SMNDC1_S228F_5	HLA-C17:01	YQDTFKYNV	0.9643	0.7979	1.108	163.53	0.2739	27.88	1/982	1/7748
SNV	Breast	SPTBN4_Q2052P_2	HLA-B42:01	HPFAQEAVV	0.7663	0.7518	0.0564	14.31	0.1497	3.31	1/982	1/7748
SNV	Breast	TMEM216_G28E_4	HLA-A02:02	FLNEWYNAT	0.988	0.5623	0.117	7.68	0.2144	18.75	1/982	1/7748
SNV	Breast	TMPRSS3_T248M_1	HLA-B42:01	MPLWIITAA	0.922	0.9664	0.0701	113.2	0.3388	1.17	1/982	1/7748
SNV	Breast	TRPV6_L568V_3	HLA-B42:01	YPVALFSTF	0.7662	0.6078	0.0168	3.85	0.0734	4.87	1/982	1/7748
SNV	Breast	TRPV6_L568V_7	HLA-B14:01	HFYDYPVAL	0.9558	0.916	0.293	51.62	0.0208	4.87	1/982	1/7748
SNV	Breast	TRPV6_L568V_7	HLA-C17:01	HFYDYPVAL	0.501	0.976	0.7355	63.72	0.1593	4.87	1/982	1/7748
SNV	Breast	TRPV6_L568V_6	HLA-C17:01	FYDYPVALF	0.8188	0.8713	0.9254	491.6	0.4761	4.87	1/982	1/7748
SNV	Breast	WDFY4_G927C_3	HLA-A02:02	FLCLGIPSSL	0.9926	0.5489	0.1069	20.62	0.3806	2.89	1/982	1/7748
SNV	Breast	ASCC3_A1580T_1	HLA-B58:01	TTEEDPKQW	0.9677	0.9343	0.1804	22.09	0.2133	10.98	1/982	1/7748
SNV	Breast	ASCC3_A1580T_2	HLA-B58:01	LTTEEDPKQW	0.9987	0.9367	0.1864	13.87	0.1665	10.98	1/982	1/7748
SNV	Breast	CDC14A_R480W_8	HLA-B58:01	RSFSINSW	0.9981	0.7966	0.2635	3.18	0.0595	5	1/982	1/7748
SNV	Breast	CDC14A_R480W_8	HLA-B58:01	RSFSINSWL	0.985	0.8104	0.0665	93.47	0.3839	5	1/982	1/7748
SNV	Breast	CDC14A_R480W_10	HLA-B58:01	TVRSFSINSW	0.9935	0.9344	0.4449	301.92	0.561	5	1/982	1/7748
SNV	Breast	CDC14A_R480W_11	HLA-B58:01	ATVRSFSINSW	0.9985	0.9637	0.195	300.77	0.5603	5	1/982	1/7748
SNV	Breast	CDH11_R50H_1	HLA-B58:01	HSKRGWVW	0.9954	0.9702	0.5707	405.7	0.6155	22.33	1/982	1/7748
SNV	Breast	KCNK1_R16W_9	HLA-B58:01	SSCVRLVEW	0.9992	0.9781	0.0449	57.07	0.3191	9.8	1/982	1/7748
SNV	Breast	PLCG2_D275Y_7	HLA-B58:01	MTKFIDYTM	0.9882	0.9161	0.2589	446.11	0.6365	15.84	1/982	1/7748
SNV	Breast	POLRMT_V78M_2	HLA-A74:01	SMSEVVVNR	0.9766	0.635	0.0746	53.39	0.0098	37.37	1/982	1/7748
SNV	Breast	SSH3_T468M_1	HLA-B58:01	MASRQSHVW	0.9993	0.9654	0.0084	1.36	0.0142	27.61	1/982	1/7748
SNV	Breast	SSH3_T468M_2	HLA-B58:01	LMASRQSHVW	0.9952	0.9559	0.3505	164.3	0.4632	27.61	1/982	1/7748
SNV	Breast	TSPYL2_G665W_9	HLA-B58:01	GSEDVWEEW	0.9498	0.9948	0.1762	5.51	0.0951	17.45	1/982	1/7748
SNV	Breast	CDKAL1_R265I_3	HLA-C07:02	YGIDIGTNL	0.8327	0.8948	0.896	105.47	0.1994	8.26	1/982	1/7748
SNV	Breast	TELO2_Q327H_1	HLA-C07:02	HRRPLLLQV	0.8726	0.9476	0.0899	144.35	0.2331	38.43	1/982	1/7748
SNV	Breast	BAG6_T631A_6	HLA-A02:01	GVASPAITV	0.9599	0.5738	1.0391	169.84	0.4793	117.66	1/982	1/7748
SNV	Breast	C12orf60_H22Y_1	HLA-C05:01	YVQDLASVI	0.9952	0.9026	0.3719	35.92	0.1503	1.97	1/982	1/7748
SNV	Breast	GNRH1_I4N_6	HLA-A02:01	KLLAGLILL	0.9932	0.6086	0.0703	1.73	0.0364	3.44	3/982	3/7748
SNV	Breast	GNRH1_I4N_6	HLA-A02:01	KLLAGLILL	0.9932	0.6086	0.0703	1.73	0.0364	3.44	3/982	3/7748
SNV	Breast	GNRH1_I4N_6	HLA-A02:01	KLLAGLILL	0.9932	0.6086	0.0703	1.73	0.0364	3.44	3/982	3/7748
SNV	Breast	MYO7A_R570G_6	HLA-C05:01	FLEKNGDTL	0.9995	0.8195	0.0781	6.38	0.0685	2.69	1/982	1/7748
SNV	Breast	STAT3_W564C_1	HLA-A02:01	CLDNIIDLV	0.9877	0.5487	0.3157	259.6	0.5492	79.22	1/982	1/7748
SNV	Breast	TAZ_P59L_2	HLA-A02:01	GLATPLITV	0.9964	0.5065	0.1151	1.48	0.0198	20.05	1/982	1/7748
SNV	Breast	TMUB2_S133I_5	HLA-C05:01	GVEPILEHL	0.9999	0.9491	0.1355	261.83	0.3216	29.17	1/982	1/7748
SNV	Breast	WDR89_L109V_8	HLA-C07:01	AREKPVQVF	0.9929	0.5205	0.0993	212.1	0.1181	8.11	1/982	1/7748
SNV	Breast	ARL6IP6_N213T_4	HLA-A02:01	AILTGIVAA	0.9449	0.5042	0.5156	110.12	0.4052	11.78	1/982	1/7748
SNV	Breast	ARL6IP6_N213T_7	HLA-C02:02	YSMAILTGI	0.7842	0.973	0.3851	52.61	0.1089	11.78	1/982	1/7748
SNV	Breast	FAM57B_P170L_9	HLA-C02:02	MLMAEVSTL	0.8887	0.9888	0.7634	208.14	0.2726	1.9	1/982	1/7748
SNV	Breast	FAM57B_P170L_8	HLA-C02:02	LMAEVSTLF	0.5413	0.9849	0.1755	43.04	0.0944	1.9	1/982	1/7748
SNV	Breast	GEMIN7_R57W_4	HLA-B44:02	QEQWARAAL	0.9797	0.7922	0.2645	386.6	0.3781	19.51	1/982	1/7748
SNV	Breast	GEMIN7_R57W_10	HLA-B44:02	QESLESQEQW	0.9995	0.7367	0.0055	1.35	0.0094	19.51	1/982	1/7748
SNV	Breast	KIAA0196_T867P_9	HLA-A02:01	RLFSEIQTPL	0.9967	0.668	0.3379	159.99	0.4691	85.72	1/982	1/7748
SNV	Breast	MOAP1_G136S_7	HLA-A02:01	SLDPEQSMI	0.9739	0.6161	0.7225	16.72	0.2022	45.66	1/982	1/7748
SNV	Breast	SLC2A11_K96R_2	HLA-B27:02	KRSLLVNNI	0.9998	0.6799	0.3196	13.71	0.2234	2.09	1/982	1/7748
SNV	Breast	SLC2A11_K96R_2	HLA-B27:02	KRSLLVNNIF	0.9999	0.5437	0.0804	3.99	0.142	2.09	1/982	1/7748
SNV	Breast	FAAH_I251L_10	HLA-B27:05	IRFPSSFCGL	0.9998	0.6483	0.1549	5.28	0.146	29.17	1/982	1/7748
SNV	Breast	HLX_V211L_5	HLA-B07:02	RPAGLHLSGL	0.9994	0.5371	0.024	1.63	0.0245	3.52	1/982	1/7748
SNV	Breast	NEDD4L_P950A_7	HLA-B27:05	NRLDLPAYETF	1	0.7985	0.0421	39.01	0.3069	10.95	1/982	1/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:05	ARHGGWTTK	0.9983	0.8261	0.1474	11.97	0.2093	7.02	11/982	17/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:05	ARHGGWTTKM	0.9998	0.666	0.0388	24.5	0.2651	7.02	11/982	17/7748
SNV	Breast	PREX2_K905T_8	HLA-B27:05	QRISSYKTF	0.9998	0.7957	0.1389	3.47	0.1106	1.03	1/982	1/7748
SNV	Breast	PREX2_K905T_8	HLA-C07:02	QRISSYKTF	0.9233	0.8521	0.1108	44.19	0.1226	1.03	1/982	1/7748
SNV	Breast	RARB_P76S_1	HLA-B35:01	SSPLPPPRVY	0.9439	0.7721	1.626	19.67	0.175	3.51	1/982	1/7748
SNV	Breast	RTN4_S525F_5	HLA-B35:01	AAQDFETDY	0.9662	0.9372	0.2475	176.02	0.3653	110.61	1/982	1/7748
SNV	Breast	ZCCHC2_P525T_1	HLA-B35:01	TLDGLTMQY	0.847	0.8786	0.7785	75.7	0.2814	11.96	1/982	1/7748
SNV	Breast	AAK1_R281Q_1	HLA-A24:02	QYSQDMHCL	0.9298	0.5834	0.1651	287.76	0.5999	4.29	1/982	1/7748
SNV	Breast	ABCA9_D506Y_10	HLA-B18:01	VEALKGVVFY	0.9336	0.6034	0.4001	200.34	0.1986	1.5	1/982	1/7748
SNV	Breast	ABCB6_E472K_5	HLA-B18:01	AESYKVERY	0.9819	0.8374	0.2114	160.68	0.186	4.39	1/982	1/7748
SNV	Breast	ABCC3_F959L_6	HLA-B18:01	VELSVLWDY	0.9798	0.655	0.0432	27.06	0.0941	4.67	1/982	1/7748
SNV	Breast	ABI1_S327L_9	HLA-C07:01	SRHNSTTSL	0.9974	0.738	0.0118	13.71	0.028	50.89	1/982	1/7748
SNV	Breast	ACACA_G150E_4	HLA-C07:01	TRFEGNKVI	0.9893	0.6486	0.1399	48.42	0.0642	30.51	1/982	1/7748
SNV	Breast	ACTR2_S243Y_9	HLA-B18:01	LETTVLVEY	0.9961	0.8433	0.0216	4.51	0.0336	168.62	1/982	1/7748
SNV	Breast	ADAMTS12_R604W_7	HLA-B44:02	SEAPTFWQM	0.9945	0.6322	0.0729	4.21	0.0687	12	1/982	1/7748
SNV	Breast	ADAMTS12_R604W_7	HLA-B18:01	SEAPTFWQM	0.9764	0.8409	0.0283	2.63	0.013	12	1/982	1/7748
SNV	Breast	ADAR_K1159N_6	HLA-C07:01	SRVSKNNIF	0.9917	0.6232	0.0925	86.89	0.0816	180.08	1/982	1/7748
SNV	Breast	ADNP_L455I_3	HLA-B18:01	NEIFPENVY	0.9979	0.7727	0.0156	1.52	0.0048	60.68	1/982	1/7748
SNV	Breast	AGAP1_R710W_3	HLA-B18:01	KEWWIRAKY	0.9857	0.9525	0.0935	11.97	0.0671	13.78	1/982	1/7748
SNV	Breast	AGBL5_F262L_4	HLA-A24:02	SFVLNGFLDF	0.9861	0.524	0.4474	28.29	0.3052	31.3	1/982	1/7748
SNV	Breast	AGO3_R403W_8	HLA-B44:02	QEFQFKVW	0.9995	0.791	0.1214	9.88	0.1108	3.28	1/982	1/7748
SNV	Breast	AGXT2_F501V_1	HLA-C07:01	VRSALTQHM	0.9986	0.5862	0.0053	134.12	0.101	2.7	1/982	1/7748
SNV	Breast	AHCTF1_R159Q_6	HLA-A24:02	LHPSLQWLF	0.9614	0.7196	0.149	31.78	0.3176	21.78	1/982	1/7748
SNV	Breast	AK9_N1540H_3	HLA-B18:01	KEHEQRLPY	0.9928	0.8881	0.0365	78.55	0.1395	1.45	1/982	1/7748
SNV	Breast	ALDH6A1_L423I_8	HLA-B18:01	EEIFGPVIV	0.8343	0.8694	0.1608	98.95	0.1511	25.67	1/982	1/7748
SNV	Breast	ALKBH8_D161Y_9	HLA-B18:01	LESVDWTEY	0.9781	0.8381	0.0696	39.41	0.1094	4.43	1/982	1/7748
SNV	Breast	ALMS1_E1054D_3	HLA-C07:01	QRDKPSVLY	0.9935	0.7186	0.2138	233.36	0.1216	4.3	1/982	1/7748
SNV	Breast	AOC3_R488Q_4	HLA-B18:01	IEIQFYATGY	0.9861	0.8863	0.164	133.5	0.1754	18.45	1/982	1/7748
SNV	Breast	AP2B1_R166W_11	HLA-B44:02	VEDQGFLDSLW	0.9997	0.5096	0.188	444.72	0.39	225.57	1/982	1/7748
SNV	Breast	AP3M1_L269R_8	HLA-C07:01	YRVSSQNRV	0.9535	0.7302	0.3229	106.78	0.0896	37.22	1/982	1/7748
SNV	Breast	AP3M1_L269R_2	HLA-C07:01	NRVAIPVYV	0.9891	0.6651	0.1757	56.05	0.0694	37.22	1/982	1/7748
SNV	Breast	APC_L409I_8	HLA-B18:01	REIRVLHIL	0.771	0.8474	0.3364	452.83	0.2546	8.39	1/982	1/7748
SNV	Breast	APC_S2432L_3	HLA-C07:01	DRLERPVLV	0.8949	0.7725	0.549	462.95	0.1692	8.39	1/982	1/7748
SNV	Breast	APOBEC3B_R311H_7	HLA-C07:01	LRIFAAHIY	0.9964	0.6171	0.2706	272.5	0.13	6.34	1/982	1/7748
SNV	Breast	APTX_E309K_8	HLA-B18:01	LESQAVIKM	0.9963	0.8763	0.0503	7.35	0.0497	31.77	1/982	1/7748
SNV	Breast	ARAF_D402N_4	HLA-C07:01	TRFNMVQLI	0.9976	0.7523	0.0876	17.08	0.0339	36.47	1/982	3/7748
SNV	Breast	ARAP2_E326D_3	HLA-B18:01	NEDNSSSIF	0.9629	0.7885	0.145	25.8	0.0921	3.99	1/982	1/7748
SNV	Breast	ARHGAP28_R714C_3	HLA-A24:02	VYCINPQAEW	0.9966	0.5225	0.3846	4.2	0.127	1.12	1/982	1/7748
SNV	Breast	ARHGAP29_D1060Y_8	HLA-B18:01	FEGVNRKY	0.9984	0.9086	0.0824	201.39	0.1989	26.53	1/982	1/7748
SNV	Breast	ARHGAP5_H849N_5	HLA-B18:01	DELVNGYIL	0.9643	0.7562	0.1273	8.93	0.0595	16.72	1/982	1/7748
SNV	Breast	ARHGAP5_H849N_5	HLA-B18:01	DELVNGYILVY	0.9938	0.706	0.4095	49.14	0.1182	16.72	1/982	1/7748
SNV	Breast	ARHGAP5_S1349Y_9	HLA-B18:01	LPDPLIPYY	0.6201	0.8819	1.1692	468.58	0.2571	16.72	1/982	1/7748
SNV	Breast	ARHGEF26_R831Q_3	HLA-B44:02	GEQLRDGERGW	0.9998	0.7706	0.0694	8.25	0.1014	15.79	1/982	1/7748
SNV	Breast	ARID2_L1293I_8	HLA-B18:01	NEMHVGSIL	0.9662	0.9054	0.0638	12.46	0.0681	11.19	1/982	1/7748
SNV	Breast	ARSJ_R190I_9	HLA-C07:01	YRKECMPTI	0.9843	0.7704	0.076	138.34	0.1021	1.61	1/982	1/7748
SNV	Breast	ASNA1_E120K_5	HLA-B18:01	DEFFKEDNM	0.996	0.9379	0.1114	29.22	0.0973	143.09	1/982	1/7748
SNV	Breast	ASPH_Q431H_7	HLA-C07:01	RRSDRQHFL	0.9972	0.5838	0.0057	8.75	0.0154	21.79	1/982	1/7748
SNV	Breast	ATP5A1_F547V_6	HLA-A26:01	EIVTNVLAGF	0.9954	0.5965	0.0785	51.46	0.0905	140.12	1/982	1/7748
SNV	Breast	ATP5SL_Q151H_7	HLA-C07:01	LRLKELHSL	0.9986	0.7426	0.0168	180.47	0.112	26.64	1/982	1/7748
SNV	Breast	ATP7A_R1208I_3	HLA-B18:01	HEIKGRTAV	0.8177	0.824	0.0838	94.48	0.1484	10.9	1/982	1/7748
SNV	Breast	ATRX_D412Y_3	HLA-B18:01	EEYLNSEF	0.999	0.8554	0.0503	11.08	0.0651	13.44	1/982	1/7748
SNV	Breast	ATRX_D412Y_4	HLA-B18:01	LEEYLNSEF	0.9952	0.9157	0.1114	37.8	0.1078	13.44	1/982	1/7748
SNV	Breast	B4GALT3_R32Q_3	HLA-A24:02	GFQSLSALF	0.9919	0.5807	0.1146	3.84	0.1191	38.71	1/982	2/7748
SNV	Breast	B4GALT7_E103K_3	HLA-C07:01	FRKRFEELL	0.9855	0.8203	0.0592	443.15	0.1661	11.67	1/982	2/7748
SNV	Breast	B4GALT7_E103K_1	HLA-C07:01	KRFEELLVF	0.9993	0.9059	0.0077	19.33	0.037	11.67	1/982	2/7748
SNV	Breast	BAIAP3_F87L_3	HLA-B18:01	VELFAHMRL	0.8966	0.8683	0.2769	286.33	0.2229	1.06	1/982	1/7748
SNV	Breast	BARX2_K190T_7	HLA-C07:01	RRMKWKTMV	0.9631	0.5142	0.082	119.52	0.0954	19.3	1/982	1/7748
SNV	Breast	BCL10_Q92H_7	HLA-C07:01	IRREKTHNF	0.9566	0.6137	0.0592	37.56	0.0551	26.14	1/982	1/7748
SNV	Breast	BCOR_S116L_1	HLA-B18:01	LERNPEMQF	0.9898	0.9314	0.1249	23.61	0.0886	28.14	1/982	1/7748
SNV	Breast	BEND5_R413Q_4	HLA-B18:01	NEEQREAKY	0.9979	0.8198	0.0958	47.52	0.1169	5.26	1/982	1/7748
SNV	Breast	BOC_A551T_7	HLA-B18:01	YEVEMATY	0.999	0.9457	0.0466	1.89	0.0073	3.15	1/982	1/7748
SNV	Breast	BSCL2_R107C_7	HLA-A24:02	MYGQPYCVTL	0.9966	0.7644	0.1365	18.59	0.2681	9.46	1/982	1/7748
SNV	Breast	C8orf48_R175I_6	HLA-B18:01	DELLNIIY	0.9992	0.8024	0.046	3.45	0.0232	1.12	1/982	1/7748
SNV	Breast	C8orf48_R175I_6	HLA-B18:01	DELLNIIYF	0.9944	0.7552	0.0243	1.68	0.0059	1.12	1/982	1/7748
SNV	Breast	CARD6_D52Y_9	HLA-B18:01	YETLENVTY	0.9978	0.9263	0.0069	1.64	0.0057	4.89	1/982	1/7748
SNV	Breast	CARD6_D52Y_11	HLA-B18:01	EEYETLENVTY	0.9965	0.9333	0.0737	3.18	0.0205	4.89	1/982	1/7748
SNV	Breast	CATSPERB_N740T_7	HLA-C07:01	KYIDLGTSY	0.7292	0.5218	0.4263	263.96	0.1275	5.18	1/982	1/7748
SNV	Breast	CBFA2T2_T592A_5	HLA-C07:01	SRSSAPASV	0.9896	0.7703	0.2061	279.52	0.132	10.72	1/982	1/7748
SNV	Breast	CCDC112_R444I_7	HLA-C07:01	WRQGIQIRV	0.9136	0.8163	0.3039	355.17	0.1506	10.07	3/982	3/7748
SNV	Breast	CCDC112_R444I_7	HLA-C07:01	WRQGIQIRV	0.9136	0.8163	0.3039	355.17	0.1506	10.07	3/982	3/7748
SNV	Breast	CCDC112_R444I_7	HLA-C07:01	WRQGIQIRV	0.9136	0.8163	0.3039	355.17	0.1506	10.07	3/982	3/7748
SNV	Breast	CCDC146_S853Y_1	HLA-C07:01	YRIEKGLPL	0.9979	0.6757	0.0031	3.6	0.0076	5.44	1/982	1/7748
SNV	Breast	CCDC173_M297I_6	HLA-B18:01	EEDEKIRKF	0.9972	0.9124	0.091	10.57	0.064	1.26	1/982	1/7748
SNV	Breast	CCDC88A_F1753L_8	HLA-C07:01	RRTTKPELL	0.9941	0.6562	0.0876	175.51	0.111	3.9	1/982	1/7748
SNV	Breast	CCM2_D110N_4	HLA-B18:01	QEHNAVLSL	0.8981	0.7576	0.0401	16.44	0.0764	12.96	1/982	1/7748
SNV	Breast	CCSER2_K299N_7	HLA-A24:02	PYAAGGNKL	0.9693	0.5023	0.469	18.99	0.2699	18.13	1/982	1/7748
SNV	Breast	CCSER2_R773Q_9	HLA-A24:02	KYTQTPWRQI	0.9901	0.9123	0.4577	101.14	0.4543	18.13	1/982	1/7748
SNV	Breast	CD22_D817Y_11	HLA-B18:01	YENVIPDFPEY	0.9944	0.9108	0.4034	104.36	0.1555	1.8	1/982	1/7748
SNV	Breast	CDKL5_Y177C_4	HLA-C07:01	TRWCRSPEL	0.9985	0.7231	0.048	188.16	0.1136	2.09	1/982	1/7748
SNV	Breast	CENPE_S1047Y_9	HLA-B18:01	IEQQRKIFY	0.9947	0.8583	0.0466	52.41	0.1208	3.43	1/982	1/7748
SNV	Breast	CEP112_E615D_6	HLA-B18:01	VELNSDKVY	0.9936	0.8406	0.0525	42.72	0.1126	1.47	1/982	1/7748
SNV	Breast	CEP83_L632I_6	HLA-B18:01	NEFRSIILV	0.9342	0.8192	0.1389	197.53	0.1978	4.18	1/982	1/7748
SNV	Breast	CEP83_L632I_9	HLA-C07:01	RRHNEFRSI	0.9981	0.6251	0.102	344.53	0.1483	4.18	1/982	1/7748
SNV	Breast	CETN2_K120N_5	HLA-B18:01	DETGNISF	0.9991	0.9268	0.149	75.13	0.1373	127.42	1/982	1/7748
SNV	Breast	CFAP57_D227Y_6	HLA-A24:02	LFESGYQRW	0.9889	0.5553	0.5397	75.04	0.4125	1.26	1/982	1/7748
SNV	Breast	CFAP70_A1086T_3	HLA-B18:01	LETEQAYKY	0.9983	0.9153	0.036	3.32	0.022	3.47	1/982	1/7748
SNV	Breast	CFL2_S24Y_9	HLA-B18:01	NDMKVRKSY	0.7392	0.7735	0.0935	127.86	0.1721	3.58	1/982	1/7748
SNV	Breast	CHD8_K673N_8	HLA-B18:01	EEFFVKYNNY	0.9935	0.8969	0.0892	44.96	0.1147	33.87	1/982	1/7748
SNV	Breast	CHKB_S234L_6	HLA-B18:01	LESTPLPVVF	0.9446	0.9048	0.2066	298.36	0.2257	2.76	1/982	1/7748
SNV	Breast	CHM_R488W_9	HLA-B44:02	EEPGTFAVW	0.9985	0.769	0.0566	2.83	0.0505	5.16	1/982	1/7748
SNV	Breast	CHM_R488W_10	HLA-B44:02	AEEPGTFAVW	0.9998	0.8405	0.001	1.27	0.0076	5.16	1/982	1/7748
SNV	Breast	CHM_R488W_9	HLA-B18:01	EEPGTFAVW	0.9424	0.9646	0.3653	159.12	0.1855	5.16	1/982	1/7748
SNV	Breast	CHUK_R253W_8	HLA-B44:02	EEMSGEVW	0.9998	0.6431	0.1604	7.33	0.0966	9.13	1/982	1/7748
SNV	Breast	CHUK_R253W_9	HLA-B44:02	CEEMSGEVW	0.9979	0.6684	0.0694	19.42	0.1482	9.13	1/982	1/7748
SNV	Breast	CHUK_R253W_8	HLA-B18:01	EEMSGEVWF	0.9793	0.753	0.0432	6.9	0.047	9.13	1/982	1/7748
SNV	Breast	CMAS_R162Q_5	HLA-B18:01	AEMIQEEGY	0.9584	0.9001	0.0599	76.38	0.1381	34.81	1/982	1/7748
SNV	Breast	CMAS_R162Q_1	HLA-B18:01	QEEGYDSVF	0.9763	0.867	0.0824	54.12	0.1221	34.81	1/982	1/7748
SNV	Breast	CMSS1_S155L_5	HLA-B18:01	SEKKLVLML	0.8768	0.9061	0.1856	356.13	0.2378	17.61	1/982	1/7748
SNV	Breast	CNPPD1_D146N_7	HLA-B18:01	EEEVFNNEW	0.9427	0.9723	0.2089	233.35	0.2088	129.5	1/982	1/7748
SNV	Breast	CNTLN_D607Y_3	HLA-B44:02	QEYSDAVW	0.9995	0.6921	0.3364	16.82	0.1399	1.27	1/982	1/7748
SNV	Breast	CNTN4_S105L_9	HLA-A24:02	TYQCTATNLF	0.9982	0.5282	0.18	2.17	0.0666	1.67	1/982	1/7748
SNV	Breast	COG5_G216V_9	HLA-B18:01	NELDYLSQV	0.9132	0.9194	0.1856	210.69	0.2018	9.94	1/982	1/7748
SNV	Breast	COG5_S609Y_11	HLA-B18:01	MENAVQPLLTY	0.9784	0.6087	0.325	399.96	0.2458	9.94	1/982	1/7748
SNV	Breast	COL14A1_R226Q_7	HLA-A26:01	EVIEAVQNL	0.9983	0.552	0.0587	3.32	0.0132	15.08	1/982	1/7748
SNV	Breast	COL14A1_R226Q_5	HLA-B18:01	IEAVQNLPY	0.9948	0.731	0.0147	36.37	0.1062	15.08	1/982	1/7748
SNV	Breast	COL14A1_R566Q_8	HLA-C07:01	SRQINGYQI	0.9945	0.5317	0.1809	440.27	0.1656	15.08	1/982	5/7748
SNV	Breast	CPA3_P313H_2	HLA-C07:01	FHYGYTSKL	0.6833	0.5814	0.3595	149.13	0.1049	4.78	1/982	1/7748
SNV	Breast	CPEB1_L131F_1	HLA-C07:01	FHNPLGNVL	0.7585	0.6879	0.364	254.84	0.1249	1	1/982	1/7748
SNV	Breast	CPEB1_V328G_6	HLA-B18:01	TEAGLGNTF	0.9833	0.9459	0.0159	1.68	0.006	1	1/982	1/7748
SNV	Breast	CPXM1_S291F_10	HLA-A24:02	LFLEAPASGF	0.9919	0.6838	0.3434	18.97	0.2699	41.66	1/982	1/7748
SNV	Breast	CSTF2T_D336Y_2	HLA-A24:02	NYPRGGTLL	0.9414	0.6079	0.2042	11.42	0.2272	36.06	1/982	1/7748
SNV	Breast	CXorf21_D233Y_3	HLA-C07:01	FHYSSPTQI	0.6801	0.5504	0.5206	444.63	0.1663	9.33	1/982	1/7748
SNV	Breast	CXorf36_D282N_5	HLA-C07:01	LRSNNLNYF	0.9931	0.6407	0.0406	80.24	0.079	4.32	1/982	1/7748
SNV	Breast	DAAM1_F972L_3	HLA-B18:01	DELFGIFDQF	0.9951	0.9671	0.1471	12.62	0.0684	15.22	1/982	1/7748
SNV	Breast	DCAF11_D41Y_3	HLA-A26:01	DVYLAQVLAY	0.9967	0.6169	0.0979	7.87	0.033	52.37	1/982	1/7748
SNV	Breast	DCAF11_D41Y_2	HLA-A24:02	VYLAQVLAY	0.9382	0.5046	0.3775	76.13	0.4145	52.37	1/982	1/7748
SNV	Breast	DCAF11_D41Y_2	HLA-A24:02	VYLAQVLAYL	0.9891	0.6155	0.2127	31.25	0.3158	52.37	1/982	1/7748
SNV	Breast	DCAF6_E810K_8	HLA-B18:01	DEVITRNKL	0.9806	0.8466	0.1249	19.67	0.0823	27.05	1/982	1/7748
SNV	Breast	DCLK1_E415K_8	HLA-B18:01	VERSTARKY	0.9589	0.908	0.1345	79.12	0.1398	49.63	1/982	1/7748
SNV	Breast	DCN_G190E_2	HLA-B18:01	SEIENGAF	0.9956	0.9374	0.1249	46.82	0.1163	93.96	1/982	1/7748
SNV	Breast	DDX24_M584I_1	HLA-A24:02	IQYPGRSLVF	0.9948	0.5337	0.7255	2.38	0.0772	46.91	1/982	1/7748
SNV	Breast	DDX3X_S293Y_10	HLA-B18:01	EEARKFSYRY	0.9824	0.771	0.5837	191.03	0.1959	137.53	1/982	1/7748
SNV	Breast	DDX3X_S293Y_3	HLA-C07:01	YRYRVRPCV	0.8331	0.6484	0.1701	195.49	0.115	137.53	1/982	1/7748
SNV	Breast	DDX3X_S293Y_1	HLA-C07:01	YRVRPCVVY	0.9939	0.6945	0.102	241.55	0.1229	137.53	1/982	1/7748
SNV	Breast	DDX60L_I1110L_9	HLA-C07:01	RQMDKLPAL	0.9932	0.7731	0.0013	393.16	0.1577	8.52	1/982	1/7748
SNV	Breast	DENND4A_S1620Y_2	HLA-A24:02	DYLGLEWHL	0.9404	0.6452	0.1956	18.66	0.2684	5.83	1/982	1/7748
SNV	Breast	DENND4B_R331C_9	HLA-A24:02	RWPAFPAFCAF	0.9962	0.6049	0.2175	28.02	0.3042	12.51	1/982	1/7748
SNV	Breast	DENND4B_R331C_6	HLA-A24:02	AFPAFCAFLTF	0.9988	0.621	0.3215	24.36	0.2913	12.51	1/982	1/7748
SNV	Breast	DIP2C_V787I_8	HLA-A24:02	FVGPGGLIF	0.9301	0.5562	0.6906	290.4	0.6015	10.41	1/982	1/7748
SNV	Breast	DIP2C_V787I_9	HLA-A24:02	GFVGPGGLIF	0.9956	0.5129	0.2755	46.42	0.3582	10.41	1/982	1/7748
SNV	Breast	DLC1_E1353G_5	HLA-B18:01	SEQAGLSY	0.9925	0.9483	0.0892	49.61	0.1186	13.61	1/982	1/7748
SNV	Breast	DLGAP5_K641T_7	HLA-C07:01	QRLGTPTSV	0.9818	0.7547	0.1215	162.97	0.1082	9.51	1/982	1/7748
SNV	Breast	DNAAF1_G254E_2	HLA-B18:01	MENPVIRQI	0.9585	0.8869	0.137	53.94	0.122	1.61	1/982	1/7748
SNV	Breast	DNAJC19_R84Q_7	HLA-C07:01	IRDAHRQIM	0.9895	0.5141	0.1086	35.08	0.0527	38.62	1/982	2/7748
SNV	Breast	DOCK10_R65Q_3	HLA-A24:02	TYQNDPLQDL	0.9499	0.7479	0.63	117.68	0.4755	6.61	1/982	1/7748
SNV	Breast	DOCK10_R65Q_3	HLA-A24:02	TYQNDPLQDLL	0.9986	0.75	0.6046	346.23	0.6325	6.61	1/982	1/7748
SNV	Breast	DOCK8_A2002V_5	HLA-B18:01	AEIPVDPKL	0.6988	0.9669	0.2114	150.29	0.1822	7.64	1/982	1/7748
SNV	Breast	DOCK8_A2002V_5	HLA-B18:01	AEIPVDPKLY	0.8643	0.9378	0.0984	66.14	0.1312	7.64	1/982	1/7748
SNV	Breast	DPY19L4_S635Y_9	HLA-B18:01	EDIYKILTY	0.963	0.7771	0.1959	14.25	0.0718	5.18	1/982	1/7748
SNV	Breast	DPY19L4_S635Y_10	HLA-B18:01	AEDIYKILTY	0.9293	0.9123	0.1249	165.35	0.1877	5.18	1/982	1/7748
SNV	Breast	DST_D1062Y_3	HLA-B18:01	LEYSQESQVF	0.9834	0.9159	0.1308	150.28	0.1822	3.15	1/982	1/7748
SNV	Breast	DST_D1062Y_9	HLA-C07:01	SRFEDFLEY	0.9984	0.81	0.0168	11.02	0.0216	3.15	1/982	1/7748
SNV	Breast	DUSP18_L184V_7	HLA-B18:01	YEKEVRVM	0.9992	0.9477	0.1114	299.09	0.2259	3.3	1/982	1/7748
SNV	Breast	DUSP18_L184V_7	HLA-B18:01	YEKEVRVMI	0.9388	0.9338	0.2617	196.51	0.1975	3.3	1/982	1/7748
SNV	Breast	DYNC2LI1_R326K_4	HLA-B18:01	DEMKIQKDL	0.9769	0.7621	0.1668	103.81	0.155	14.1	1/982	1/7748
SNV	Breast	DYSF_D1306Y_5	HLA-B18:01	SEDTYLPY	0.9933	0.8266	0.3393	326.8	0.2319	9.53	1/982	1/7748
SNV	Breast	DYSF_D1306Y_7	HLA-B18:01	DESEDTYLPY	0.975	0.8341	0.0717	45.05	0.1148	9.53	1/982	1/7748
SNV	Breast	EBLN2_R84I_8	HLA-B18:01	FELSGKNIQY	0.9962	0.8834	0.0295	11.84	0.0668	1.98	1/982	1/7748
SNV	Breast	ECHDC1_E42D_4	HLA-B18:01	YEEDVKKTL	0.9746	0.9081	0.1181	20.54	0.0838	5.47	1/982	1/7748
SNV	Breast	EEF2K_D633Y_1	HLA-A24:02	YWLEALHW	0.9982	0.7685	0.94	153.52	0.5126	10.53	1/982	1/7748
SNV	Breast	EEF2K_D633Y_2	HLA-A24:02	QYWLEALHW	0.9974	0.7795	0.0945	5.4	0.154	10.53	1/982	1/7748
SNV	Breast	EFCAB7_R349Q_4	HLA-B44:02	TELQNREVFGW	0.9998	0.7536	0.036	31.78	0.1809	2.44	1/982	1/7748
SNV	Breast	EFCAB7_R349Q_4	HLA-B18:01	TELQNREVF	0.995	0.9462	0.0638	5.49	0.0385	2.44	1/982	1/7748
SNV	Breast	EGLN1_K402T_9	HLA-B18:01	DERARAKVTY	0.9291	0.8426	0.3113	23.25	0.0881	20.87	1/982	1/7748
SNV	Breast	EHBP1_K464N_5	HLA-C07:01	YRGVNITNF	0.9958	0.5037	0.0537	43.81	0.0607	11.49	1/982	1/7748
SNV	Breast	EMC1_S600Y_7	HLA-B18:01	KESGMSYLY	0.9862	0.9377	0.0661	15.38	0.0743	17.5	1/982	1/7748
SNV	Breast	ENPEP_S342Y_9	HLA-B18:01	EEYFAMNYY	0.9974	0.9206	0.0255	1.44	0.0042	2.23	1/982	1/7748
SNV	Breast	ENPP2_K671T_2	HLA-C07:01	YTNDKQMSY	0.7425	0.5993	1.2979	132	0.1004	5.18	1/982	1/7748
SNV	Breast	ENTPD6_R281W_7	HLA-A24:02	GYLTALWMF	0.9815	0.5262	0.0116	2.36	0.0762	41.22	1/982	2/7748
SNV	Breast	EPHA4_R492W_9	HLA-B18:01	NERSYRIVW	0.9171	0.8119	0.2617	19.32	0.0817	2.59	1/982	1/7748
SNV	Breast	ERCC4_L580I_8	HLA-B18:01	VEPRYVVIY	0.9817	0.8495	0.197	33.69	0.1031	2.02	1/982	1/7748
SNV	Breast	ERCC4_L580I_10	HLA-B18:01	HEVEPRYVVIY	0.9536	0.9011	0.2955	24.45	0.0898	2.02	1/982	1/7748
SNV	Breast	ERCC6L2_S209L_9	HLA-B18:01	EEMASYFNL	0.9676	0.8712	0.1584	37.66	0.1076	2.3	1/982	1/7748
SNV	Breast	ERCC6_D1248Y_9	HLA-B18:01	SEAKEQSNY	0.9902	0.9114	0.0599	106.1	0.1568	2.24	1/982	1/7748
SNV	Breast	ERCC6_E272K_7	HLA-B18:01	NEASGFKKY	0.9982	0.777	0.0166	1.73	0.0063	2.24	1/982	1/7748
SNV	Breast	ESCO2_K91T_6	HLA-C07:01	FYNQNTWYL	0.5228	0.6422	0.6216	189.67	0.1139	1.75	1/982	1/7748
SNV	Breast	EVA1A_K69N_6	HLA-C07:01	RRRPGNKFL	0.9617	0.7394	0.102	239.05	0.1225	3.82	1/982	1/7748
SNV	Breast	F5_S701F_9	HLA-B18:01	YEIFEPPEF	0.9989	0.9427	0.0156	1.66	0.0058	1.08	1/982	1/7748
SNV	Breast	F5_S701F_6	HLA-B18:01	FEPPEFTVM	0.9562	0.973	0.2209	57.92	0.1248	1.08	1/982	1/7748
SNV	Breast	FAF1_E55A_9	HLA-B44:02	QENGILQSAY	0.997	0.5003	0.0305	1.68	0.0236	13.04	1/982	1/7748
SNV	Breast	FAF1_E55A_9	HLA-B18:01	QENGILQSAY	0.9814	0.9044	0.0574	37.74	0.1077	13.04	1/982	1/7748
SNV	Breast	FAM102A_R60Q_4	HLA-C07:01	VRWQKRFTF	0.9989	0.5544	0.0061	16	0.0323	92.59	1/982	1/7748
SNV	Breast	FAM122B_R178K_7	HLA-B18:01	TESQPKKLF	0.9885	0.9576	0.0709	139.41	0.1779	25.93	1/982	1/7748
SNV	Breast	FAM160A1_R382W_8	HLA-C07:01	SRINTPFWL	0.9973	0.8185	0.0456	14.4	0.0295	1.13	1/982	1/7748
SNV	Breast	FAM161A_R623I_1	HLA-B18:01	IENGEENYF	0.9441	0.8881	0.1181	72.67	0.1357	1.76	1/982	1/7748
SNV	Breast	FAM161A_R623I_3	HLA-B18:01	EEIENGEENY	0.9686	0.878	0.0838	43.82	0.1137	1.76	1/982	1/7748
SNV	Breast	FAM162A_T131I_3	HLA-B18:01	HEILTSLNL	0.9649	0.8709	0.0638	17.45	0.0783	48.97	1/982	1/7748
SNV	Breast	FAM162A_T131I_5	HLA-C07:01	QRHEILTSL	0.9996	0.6001	0.0088	9.28	0.0169	48.97	1/982	1/7748
SNV	Breast	FAM172A_R336Q_8	HLA-B44:02	QEAGKTIQEW	0.9996	0.8862	0.002	1.12	0.0034	15.07	1/982	1/7748
SNV	Breast	FAM172A_R336Q_9	HLA-B44:02	HQEAGKTIQEW	0.9988	0.9349	0.2324	382.04	0.3771	15.07	1/982	1/7748
SNV	Breast	FAM208B_D54Y_4	HLA-B18:01	QELYFKYVM	0.9868	0.8626	0.0877	19.73	0.0824	18.71	1/982	1/7748
SNV	Breast	FAT1_E2149K_9	HLA-B18:01	FELDTLNKKY	0.9981	0.8081	0.0696	17.03	0.0775	14.11	1/982	1/7748
SNV	Breast	FBXL5_D122A_7	HLA-B18:01	LEAFTRAF	0.9973	0.8665	0.1584	219.33	0.2046	61.04	1/982	1/7748
SNV	Breast	FBXO21_R296C_1	HLA-C07:01	CRTGIPISM	0.9983	0.7855	0.0621	126.23	0.0982	20.14	1/982	1/7748
SNV	Breast	FBXW7_S86L_9	HLA-B18:01	EENNNRFIL	0.9569	0.8994	0.391	104.51	0.1556	3.8	1/982	1/7748
SNV	Breast	FHL1_D147E_8	HLA-C07:01	SFFPKGEEF	0.7424	0.8925	0.2323	134.63	0.1011	18.37	1/982	1/7748
SNV	Breast	FIBP_R105W_6	HLA-B18:01	DEAFVWEVL	0.9773	0.9816	0.0975	31.48	0.1004	40.15	1/982	1/7748
SNV	Breast	FILIP1_R711W_8	HLA-B44:02	AELRHRFW	0.9991	0.5194	0.2037	93.43	0.2578	1.27	1/982	1/7748
SNV	Breast	FRYL_D2819Y_9	HLA-B18:01	EDMYRINTY	0.8302	0.9005	0.3136	27.9	0.0954	13.49	1/982	1/7748
SNV	Breast	FRYL_D2819Y_6	HLA-C07:01	YRINTYAQQM	0.9996	0.7332	0.1663	199.8	0.1158	13.49	1/982	1/7748
SNV	Breast	FUCA2_L424R_2	HLA-C07:01	KRLGHGQPL	0.9902	0.709	0.0107	396.71	0.1583	45.04	1/982	1/7748
SNV	Breast	GAA_L745M_9	HLA-A24:02	TWTVDHQLMW	0.9961	0.8361	0.7484	182.17	0.5364	67.3	1/982	1/7748
SNV	Breast	GAL3ST4_T9M_2	HLA-C07:01	LRLWGPRSL	0.9981	0.7934	0.0375	14.55	0.0298	21.22	1/982	1/7748
SNV	Breast	GART_L899I_4	HLA-C07:01	MRIISGPFV	0.959	0.7262	0.3962	197.04	0.1153	25.73	1/982	1/7748
SNV	Breast	GBE1_D352Y_6	HLA-B18:01	EEYRFYGF	0.9985	0.85	0.0935	97.19	0.1498	9.09	1/982	1/7748
SNV	Breast	GBE1_D352Y_6	HLA-B18:01	EEYRFYGFRF	0.9704	0.808	0.4284	433.62	0.2514	9.09	1/982	1/7748
SNV	Breast	GBE1_D352Y_4	HLA-C07:01	YRFYGFRF	0.9998	0.5385	0.7705	290.62	0.135	9.09	1/982	1/7748
SNV	Breast	GIMAP8_S191Y_9	HLA-B18:01	LELLRKVEY	0.9974	0.8979	0.0449	7.98	0.0538	5.56	1/982	1/7748
SNV	Breast	GLUD1_S462Y_5	HLA-B18:01	YERDYNYHL	0.9738	0.7151	0.1407	9.39	0.061	213.46	1/982	1/7748
SNV	Breast	GNPAT_L612F_9	HLA-C07:01	VRKFTSQLF	0.9869	0.7303	0.0569	163.72	0.1084	73.68	1/982	1/7748
SNV	Breast	GOLPH3L_R88Q_8	HLA-B18:01	IELAMRGQIY	0.9838	0.6918	0.1746	479.77	0.2588	84.02	1/982	1/7748
SNV	Breast	GON4L_G1369E_1	HLA-B18:01	EEVTKQTVL	0.9103	0.8732	0.149	148.94	0.1817	13.3	1/982	1/7748
SNV	Breast	GPATCH1_E518K_5	HLA-C07:01	KRYDKFLVHM	0.9997	0.8275	0.0107	172.97	0.1105	9.63	1/982	1/7748
SNV	Breast	GPATCH1_S251L_5	HLA-A24:02	LFGTLGEHF	0.9932	0.5719	0.1235	4.33	0.1303	9.63	1/982	1/7748
SNV	Breast	GPATCH1_S251L_6	HLA-A24:02	ALFGTLGEHF	0.9857	0.6491	0.6815	459.31	0.6822	9.63	1/982	1/7748
SNV	Breast	GPRC5C_R164W_2	HLA-A24:02	SWRFLFGVLF	0.9839	0.732	0.2556	232.93	0.5706	6.73	1/982	1/7748
SNV	Breast	GPRC5C_R164W_1	HLA-C07:01	WRFLFGVLF	0.9969	0.8001	0.1053	197.59	0.1154	6.73	1/982	1/7748
SNV	Breast	GRAMD4_R76Q_5	HLA-B18:01	TEFDQLNEI	0.9066	0.8768	0.1094	30.11	0.0986	25.66	1/982	1/7748
SNV	Breast	GRASP_R193W_10	HLA-B44:02	LETLYGTSIW	0.998	0.6755	0.4469	81.58	0.2468	7.07	1/982	2/7748
SNV	Breast	GTF2H1_I43V_5	HLA-B18:01	DRFTVSHMY	0.7537	0.7297	0.7149	172.63	0.1901	14	1/982	1/7748
SNV	Breast	GTPBP10_R64W_5	HLA-C07:01	DRYPWKRFV	0.6095	0.5095	0.7564	304.04	0.1385	5.92	1/982	1/7748
SNV	Breast	GXYLT2_F260L_8	HLA-C07:01	SRFARHPLY	0.9987	0.6156	0.0406	8.91	0.0159	18.5	1/982	1/7748
SNV	Breast	HDHD2_F73L_6	HLA-B18:01	SEDEILTSL	0.9138	0.9497	0.1148	35.28	0.105	10.89	1/982	1/7748
SNV	Breast	HDHD2_F73L_4	HLA-B18:01	DEILTSLTA	0.8861	0.7665	0.1249	56.1	0.1235	10.89	1/982	1/7748
SNV	Breast	HDLBP_R901W_1	HLA-B18:01	WDFSVQIKF	0.951	0.8217	0.0408	322.75	0.2311	206.24	1/982	1/7748
SNV	Breast	HEG1_S529L_4	HLA-B18:01	GERLIAGISY	0.7069	0.7242	0.306	348.87	0.2364	21.17	1/982	1/7748
SNV	Breast	HELLS_K51Q_3	HLA-B44:02	LEQARMSW	0.9993	0.6654	0.8317	417.78	0.3847	2.89	1/982	1/7748
SNV	Breast	HERC1_S4653Y_8	HLA-B18:01	HEMIPLDY	0.9967	0.8523	0.0395	14.41	0.0722	10.02	1/982	1/7748
SNV	Breast	HERC1_S4653Y_8	HLA-B18:01	HEMIPLDYF	0.994	0.9179	0.0208	4.97	0.036	10.02	1/982	1/7748
SNV	Breast	HIPK2_R117Q_3	HLA-C07:01	MRQSTVSLL	0.9987	0.8105	0.0265	10.21	0.0195	52.51	1/982	1/7748
SNV	Breast	HMGCS1_R79I_3	HLA-B18:01	MEINNLSY	0.9986	0.7349	0.0824	5.27	0.0374	25.67	1/982	1/7748
SNV	Breast	HOOK1_E284K_9	HLA-B18:01	EELEKQLIKF	0.9966	0.7043	0.1389	83.18	0.1423	11.99	1/982	1/7748
SNV	Breast	HSP90AA1_L67I_8	HLA-B18:01	QEKAQVFIW	0.8994	0.8	0.3275	341.89	0.235	630.57	1/982	1/7748
SNV	Breast	HYOU1_E124K_6	HLA-A24:02	RFPEHKLTF	0.9975	0.5199	0.0299	1.24	0.0141	69.18	1/982	1/7748
SNV	Breast	HYOU1_E124K_7	HLA-A24:02	ARFPEHKLTF	0.9611	0.6457	1.9679	6.47	0.1725	69.18	1/982	1/7748
SNV	Breast	HYOU1_E124K_7	HLA-C07:01	ARFPEHKLTF	0.9996	0.8884	0.0149	75.39	0.0774	69.18	1/982	1/7748
SNV	Breast	IARS2_R784W_9	HLA-A24:02	QYDFGKVVW	0.9856	0.7553	0.3434	4.68	0.1386	125.56	1/982	1/7748
SNV	Breast	IARS2_R784W_7	HLA-A24:02	DFGKVVWLL	0.9566	0.5515	0.4764	193.31	0.5447	125.56	1/982	1/7748
SNV	Breast	IARS2_R784W_10	HLA-A24:02	KQYDFGKVVW	0.9618	0.7007	1.4575	77.75	0.4175	125.56	1/982	1/7748
SNV	Breast	IARS2_S833Y_10	HLA-B18:01	VEILDVIVRY	0.9943	0.9079	0.2041	7.97	0.0537	125.56	1/982	1/7748
SNV	Breast	IARS2_S833Y_1	HLA-C07:01	YFAPILPHL	0.8112	0.5961	0.7274	72.26	0.0762	125.56	1/982	1/7748
SNV	Breast	ICE2_S869Y_4	HLA-B18:01	AEDYSLLIY	0.9096	0.873	0.1211	65.01	0.1304	10.18	1/982	1/7748
SNV	Breast	ID1_L95F_4	HLA-B18:01	VEIFQHVIDY	0.9693	0.8008	0.2395	232.87	0.2087	13.31	1/982	1/7748
SNV	Breast	IFRD1_E449K_7	HLA-C07:01	KRADVGKFF	0.9956	0.5329	0.0334	16.74	0.0334	7.7	3/982	3/7748
SNV	Breast	IFRD1_E449K_7	HLA-C07:01	KRADVGKFF	0.9956	0.5329	0.0334	16.74	0.0334	7.7	3/982	3/7748
SNV	Breast	IFRD1_E449K_7	HLA-C07:01	KRADVGKFF	0.9956	0.5329	0.0334	16.74	0.0334	7.7	3/982	3/7748
SNV	Breast	IFRD1_R396Q_5	HLA-B18:01	NEFLQNVF	0.9989	0.9213	0.0341	4.19	0.0317	7.7	1/982	1/7748
SNV	Breast	IGHV3-30_A107V_1	HLA-B18:01	VEDTAVYY	0.9839	0.9347	0.3825	252.51	0.2143	4.68	1/982	1/7748
SNV	Breast	INPP5F_F617L_4	HLA-B18:01	DEKLHGGWAL	0.833	0.9547	0.6491	496.12	0.2613	9.43	1/982	1/7748
SNV	Breast	INTS6_N385D_4	HLA-C07:01	MPYDYPVLL	0.9552	0.7758	1.3918	214.6	0.1185	6.5	1/982	1/7748
SNV	Breast	INTS6_R174W_2	HLA-A24:02	LWLPGTMSV	0.8921	0.7668	0.3252	127.58	0.4868	6.5	1/982	1/7748
SNV	Breast	ITGAL_R794H_5	HLA-C07:01	SRALHLTAF	0.9994	0.5726	0.0044	23.6	0.042	18.09	1/982	1/7748
SNV	Breast	ITPR1_F1864L_4	HLA-B18:01	SEKLFKVFY	0.985	0.8961	0.0295	10.72	0.0643	17.89	1/982	1/7748
SNV	Breast	IVD_R398Q_5	HLA-C07:01	GRFLQDAKL	0.9925	0.8503	0.112	495.45	0.1739	54.04	1/982	1/7748
SNV	Breast	JMY_R397Q_1	HLA-C07:01	QRQQIKISM	0.999	0.6659	0.082	72.15	0.0762	3.62	1/982	1/7748
SNV	Breast	KANK3_A727T_2	HLA-A26:01	DTDGATALM	0.8034	0.7666	0.1848	130.38	0.1394	1.23	1/982	1/7748
SNV	Breast	KANSL1L_R358I_6	HLA-B18:01	DEYTLIKNV	0.9548	0.8678	0.1705	104.03	0.1552	2.3	1/982	1/7748
SNV	Breast	KATNAL2_R336W_6	HLA-B18:01	SEKLVWVLF	0.9873	0.9179	0.0316	31.64	0.1006	2.26	1/982	1/7748
SNV	Breast	KCNMA1_N265H_1	HLA-C07:01	HRSWLGLRF	0.9991	0.8496	0.0621	13.4	0.0273	3.5	1/982	1/7748
SNV	Breast	KIAA0922_V690I_8	HLA-B18:01	LEMKRVGIVF	0.9226	0.5796	0.3113	189.65	0.1955	7.13	1/982	2/7748
SNV	Breast	KIAA1217_A831T_2	HLA-A26:01	DTAQAAQYM	0.9974	0.7611	0.0398	18.79	0.0563	48.49	1/982	1/7748
SNV	Breast	KIF11_R83Q_3	HLA-A24:02	VYQSVVCPIL	0.979	0.5909	0.2082	40.64	0.3439	11.65	1/982	1/7748
SNV	Breast	KIF16B_R145Q_6	HLA-B18:01	DEASFQTEV	0.944	0.8162	0.1624	163.14	0.1869	31.34	1/982	1/7748
SNV	Breast	KIF16B_R145Q_6	HLA-B18:01	DEASFQTEVSY	0.9855	0.9072	0.177	12.83	0.0688	31.34	1/982	1/7748
SNV	Breast	KIF27_R615Q_4	HLA-A24:02	SLDQIFAGF	0.9114	0.7246	0.7001	492.83	0.6946	1.81	1/982	1/7748
SNV	Breast	KIF27_R615Q_6	HLA-A24:02	MYSLDQIFAGF	0.9995	0.6995	0.2666	258.74	0.5852	1.81	1/982	1/7748
SNV	Breast	KLHL24_R60C_4	HLA-B18:01	NEFCDSRLF	0.9983	0.6841	0.0324	3.67	0.0257	11.86	1/982	1/7748
SNV	Breast	KRIT1_R426I_8	HLA-B18:01	YEKVRIYIM	0.965	0.8485	0.2769	58.33	0.1251	13.14	1/982	1/7748
SNV	Breast	KRT10_R165W_7	HLA-A24:02	SYLDKVWAL	0.9968	0.5702	0.0032	1.34	0.0175	18.76	1/982	2/7748
SNV	Breast	KRT10_R165W_7	HLA-C07:01	SYLDKVWAL	0.6127	0.8042	0.475	71	0.0758	18.76	1/982	1/7748
SNV	Breast	L3MBTL1_S275L_8	HLA-B44:02	GEKKECWLW	0.9976	0.602	0.0305	13.11	0.1255	1.31	1/982	1/7748
SNV	Breast	LARP1_E597K_8	HLA-C07:01	SRAKMSAKL	0.9849	0.6924	0.039	171.47	0.1101	107.76	1/982	1/7748
SNV	Breast	LATS2_D800Y_2	HLA-C07:01	IYLDGHIKL	0.6827	0.5041	0.5258	358.15	0.1512	12.01	1/982	1/7748
SNV	Breast	LATS2_S179L_8	HLA-A24:02	SFEGTGDLF	0.969	0.5364	0.4018	24.39	0.2914	12.01	1/982	1/7748
SNV	Breast	LCA5L_N335S_7	HLA-B18:01	RELEIKSIY	0.9939	0.8204	0.039	5.17	0.037	1.47	1/982	1/7748
SNV	Breast	LIPT1_F64L_8	HLA-B18:01	LEGKPILLF	0.9906	0.7824	0.0709	84.57	0.1431	5.94	1/982	2/7748
SNV	Breast	LMBR1L_T59I_5	HLA-B18:01	DEDAIVNKI	0.954	0.8477	0.2281	368.5	0.2402	12.67	1/982	1/7748
SNV	Breast	LRP6_D843Y_2	HLA-A24:02	QYYIYWTDW	0.9847	0.5896	0.2319	15.15	0.2506	8.02	1/982	1/7748
SNV	Breast	LRP6_R415Q_5	HLA-A24:02	DWVAQNLYW	0.9763	0.6866	0.5681	121.08	0.4795	8.02	1/982	1/7748
SNV	Breast	LRPPRC_Q82K_1	HLA-A24:02	KFDWALMRL	0.943	0.8277	0.4234	232.46	0.5703	71.99	1/982	1/7748
SNV	Breast	LRRC49_N129H_5	HLA-C07:01	TRIQHISNL	0.9993	0.5638	0.0201	6.55	0.012	1.18	1/982	1/7748
SNV	Breast	LRRC8C_I431T_8	HLA-C07:01	NRLELPLTM	0.9996	0.5745	0.0118	7.54	0.0136	4.39	1/982	1/7748
SNV	Breast	LYST_S2605L_9	HLA-A24:02	KFPLAQTEL	0.9844	0.6046	0.3565	118.13	0.476	3.51	1/982	1/7748
SNV	Breast	MAD2L1_F23L_7	HLA-B18:01	AEIVAELF	0.9962	0.9218	0.0941	413.86	0.2482	5.01	1/982	1/7748
SNV	Breast	MAGI3_R730Q_4	HLA-A24:02	VFLQKQESGF	0.9556	0.7987	0.3775	215.4	0.5597	7.48	1/982	1/7748
SNV	Breast	MAN1A1_R514Q_6	HLA-B18:01	HESYNQTF	0.9958	0.9605	0.0994	184.69	0.194	26.51	1/982	1/7748
SNV	Breast	MAT2B_R312Q_6	HLA-C07:01	QRTPFQIGI	0.9969	0.5682	0.1878	147.84	0.1046	28.26	1/982	4/7748
SNV	Breast	MED14_D457Y_2	HLA-A24:02	VYLHSGMFQL	0.9951	0.5891	0.148	12.98	0.2378	16.36	1/982	1/7748
SNV	Breast	MED14_D457Y_9	HLA-B18:01	SECLHIFVY	0.9918	0.8091	0.0045	8.96	0.0597	16.36	1/982	1/7748
SNV	Breast	MEI1_R1068Q_6	HLA-C07:01	LRTALQQSF	0.9987	0.7675	0.0592	169.93	0.1098	1.16	1/982	1/7748
SNV	Breast	METTL25_T76M_3	HLA-B44:02	SEMRPLVEAEW	0.9999	0.6442	0.0135	4.49	0.0732	3.08	1/982	1/7748
SNV	Breast	METTL7A_P166Q_3	HLA-C07:01	LRQGGAFYF	0.9971	0.7548	0.0201	22.12	0.0404	33.33	1/982	1/7748
SNV	Breast	MGEA5_Q86H_5	HLA-C07:01	FRRLHKWEL	0.9807	0.8396	0.0211	62.15	0.0723	96.07	1/982	1/7748
SNV	Breast	MICALL1_D50Y_9	HLA-C07:01	HRHRPDLLY	0.9959	0.6143	0.1053	76.79	0.0778	8.94	1/982	1/7748
SNV	Breast	MICALL1_D50Y_9	HLA-C07:01	HRHRPDLLYF	0.9993	0.6086	0.0786	265.17	0.1279	8.94	1/982	1/7748
SNV	Breast	MKLN1_R178H_8	HLA-C07:01	YREQEAIHL	0.9908	0.6923	0.102	87.36	0.0818	6.99	1/982	1/7748
SNV	Breast	MLH3_S490Y_9	HLA-B18:01	GENEKHKKY	0.9612	0.8778	0.2361	255.45	0.215	8.9	1/982	1/7748
SNV	Breast	MMP3_K397N_3	HLA-B18:01	KENNKTYFF	0.972	0.8461	0.4789	355.77	0.2378	27.89	1/982	1/7748
SNV	Breast	MNDA_K6N_9	HLA-B18:01	NEYNKILLL	0.9922	0.675	0.0941	5.8	0.0398	23.34	1/982	1/7748
SNV	Breast	MPEG1_S355F_10	HLA-A24:02	TYPGCTDLNF	0.9964	0.6013	0.14	2.88	0.0949	25.2	1/982	1/7748
SNV	Breast	MRC1_E63K_6	HLA-C07:01	FRWVSKSQI	0.9981	0.5306	0.0949	163.15	0.1083	4.29	1/982	2/7748
SNV	Breast	MRPL44_E127K_5	HLA-B18:01	QELSKQGTSF	0.9161	0.8327	0.0749	281.15	0.2216	59.09	1/982	1/7748
SNV	Breast	MS4A7_S162L_1	HLA-B18:01	LEYYYPIY	0.9853	0.91	0.5076	55.17	0.1229	69.92	1/982	1/7748
SNV	Breast	MTMR4_D1102Y_9	HLA-B18:01	SEASWEPVY	0.9851	0.9841	0.0131	2.73	0.0142	14.68	1/982	1/7748
SNV	Breast	MTMR9_A363T_3	HLA-B18:01	FETLIEREW	0.9927	0.9658	0.1945	385.25	0.2432	7.5	1/982	1/7748
SNV	Breast	MUM1_R93H_6	HLA-C07:01	YRRSLHVAL	0.9907	0.6897	0.0077	10.08	0.0191	7.37	1/982	1/7748
SNV	Breast	MUT_D175Y_9	HLA-B18:01	VEDTKILFY	0.9818	0.898	0.154	43.66	0.1135	27.24	1/982	1/7748
SNV	Breast	MXRA5_S767Y_9	HLA-B18:01	AEGRRVFEY	0.9852	0.8858	0.2114	263.38	0.2171	124.36	1/982	1/7748
SNV	Breast	MXRA5_S767Y_3	HLA-B18:01	FEYRRRINM	0.9374	0.9527	0.1172	109.85	0.1597	124.36	1/982	1/7748
SNV	Breast	MXRA5_S825Y_2	HLA-A24:02	IYPPSASPV	0.966	0.7242	0.2666	104.03	0.4582	124.36	1/982	1/7748
SNV	Breast	MYCBP2_V974I_6	HLA-A24:02	LMDGQIFTF	0.9886	0.5052	0.1218	24.7	0.2925	7.65	1/982	1/7748
SNV	Breast	MYH10_K1305T_9	HLA-B18:01	EEAEKKGITF	0.9722	0.6606	0.0858	45.31	0.115	14.58	1/982	1/7748
SNV	Breast	MYO10_R89I_5	HLA-C07:01	QRYKINQIY	0.99	0.7779	0.0925	53.89	0.068	13.65	1/982	1/7748
SNV	Breast	MYO10_R89I_3	HLA-C07:01	YKINQIYTY	0.9969	0.5583	0.804	463.96	0.1693	13.65	1/982	1/7748
SNV	Breast	NAALADL2_D85Y_9	HLA-B18:01	SETIDLNLY	0.9655	0.9309	0.0418	30.12	0.0986	10.34	1/982	1/7748
SNV	Breast	NAF1_D347Y_3	HLA-B44:02	GEYFTEVHQNW	0.9996	0.5278	0.0899	4.76	0.0778	5.92	1/982	1/7748
SNV	Breast	NAF1_D347Y_9	HLA-B18:01	SEFNEPGEY	0.9962	0.9678	0.0243	4.35	0.0327	5.92	1/982	1/7748
SNV	Breast	NAF1_D347Y_9	HLA-B18:01	SEFNEPGEYF	0.9829	0.949	0.0574	39.64	0.1097	5.92	1/982	1/7748
SNV	Breast	NAV3_R1249Q_11	HLA-A24:02	KYPDIASPTFQ	0.9775	0.6318	1.9246	47.45	0.3605	1.04	1/982	2/7748
SNV	Breast	NCF4_R105Q_2	HLA-B18:01	MQIPALNAY	0.7997	0.9056	0.0689	56.4	0.1237	9	1/982	1/7748
SNV	Breast	NCF4_R105Q_4	HLA-B18:01	AEMQIPALNAY	0.9753	0.8248	0.1345	107.22	0.1577	9	1/982	1/7748
SNV	Breast	NCKAP1L_S1084F_6	HLA-C07:01	TRNREFISL	0.9989	0.77	0.0949	87.67	0.082	12.65	1/982	1/7748
SNV	Breast	NCKAP1L_S1084F_4	HLA-C07:01	NREFISLLM	0.9904	0.5685	0.2706	223.92	0.1201	12.65	1/982	1/7748
SNV	Breast	NCKAP5L_S1099L_5	HLA-B18:01	EEMPLEDSL	0.9016	0.8901	0.1044	26.45	0.0931	8.04	1/982	1/7748
SNV	Breast	NDNF_F65L_9	HLA-C07:01	FRDTPKRYL	0.9863	0.6834	0.0925	8.41	0.0147	1.07	1/982	1/7748
SNV	Breast	NDNF_F65L_9	HLA-C07:01	FRDTPKRYLF	0.9984	0.595	0.2622	134.21	0.101	1.07	1/982	1/7748
SNV	Breast	NDUFS2_R35W_2	HLA-A24:02	VWQWQPDVEW	0.9865	0.6757	0.5289	46.32	0.3579	65.2	1/982	1/7748
SNV	Breast	NEDD4_E94K_6	HLA-B18:01	FEVFDKNRL	0.9636	0.9475	0.2684	246.38	0.2126	3.75	1/982	1/7748
SNV	Breast	NES_S638Y_9	HLA-B18:01	KENQELMKY	0.9965	0.8168	0.1235	37.22	0.1071	14.94	1/982	1/7748
SNV	Breast	NEXN_S243Y_9	HLA-B18:01	SEAKKESLY	0.9853	0.9366	0.0372	160.83	0.1861	7.83	1/982	1/7748
SNV	Breast	NFKB2_L307M_9	HLA-B18:01	IERPVTVFM	0.9619	0.8004	0.0984	15.15	0.0738	33.1	1/982	1/7748
SNV	Breast	NHS_R1038I_9	HLA-C07:01	KRKPKVPEI	0.9957	0.5774	0.073	134.16	0.101	2.55	1/982	1/7748
SNV	Breast	NHS_S1104L_3	HLA-C07:01	LRLNPPPSL	0.9989	0.7254	0.0425	8.75	0.0154	2.55	1/982	1/7748
SNV	Breast	NPAS2_S496L_6	HLA-A24:02	PMAQFLAQF	0.9864	0.6939	0.5068	152.59	0.5118	1.47	1/982	1/7748
SNV	Breast	NRIP3_F227L_5	HLA-B18:01	EEIPLVETV	0.9246	0.9032	0.0737	12.86	0.0689	13.62	1/982	1/7748
SNV	Breast	NT5C2_L87F_4	HLA-B18:01	QELFSFAY	0.9981	0.828	0.0509	15.97	0.0755	8.36	1/982	1/7748
SNV	Breast	NUFIP1_R475W_11	HLA-B44:02	HERNVILQCVW	0.9969	0.706	0.2324	232.15	0.3348	8.34	1/982	3/7748
SNV	Breast	NUP107_R422I_8	HLA-B18:01	AEDELFNIY	0.9656	0.9497	0.0372	2.83	0.0154	15.33	1/982	1/7748
SNV	Breast	NYNRIN_E1870D_8	HLA-A24:02	IWGFPTPDKL	0.9921	0.5756	0.5949	43.74	0.3518	6.28	1/982	1/7748
SNV	Breast	OMA1_R18Q_8	HLA-C07:01	ARNHVFFQF	0.9992	0.6762	0.0053	66.72	0.0741	10.22	1/982	1/7748
SNV	Breast	ORC4_R53I_6	HLA-B18:01	SELLKITAL	0.9594	0.9357	0.0921	38.69	0.1087	12.83	1/982	1/7748
SNV	Breast	ORM2_K138N_3	HLA-B18:01	DENNWGLSF	0.9983	0.8863	0.0201	1.23	0.0024	2.24	1/982	1/7748
SNV	Breast	ORM2_K138N_4	HLA-B18:01	DDENNWGLSF	0.8529	0.9186	1.0346	31.9	0.101	2.24	1/982	1/7748
SNV	Breast	ORM2_K138N_3	HLA-B18:01	DENNWGLSFY	0.9957	0.8846	0.2926	20.92	0.0844	2.24	1/982	1/7748
SNV	Breast	OSBPL10_R187Q_4	HLA-C07:01	SRSQSLTLL	0.999	0.6132	0.0278	35.95	0.0536	4.04	1/982	1/7748
SNV	Breast	OTUD4_K834N_7	HLA-B18:01	EESLSGNNM	0.9042	0.9614	0.1705	110.75	0.1603	16.33	1/982	1/7748
SNV	Breast	OTUD4_K834N_7	HLA-B18:01	EESLSGNNMF	0.8471	0.9086	0.1985	385.81	0.2433	16.33	1/982	1/7748
SNV	Breast	OTUD7B_H619R_1	HLA-C07:01	RRHQYQEEM	0.9987	0.7091	0.0063	103.29	0.0883	10.42	1/982	1/7748
SNV	Breast	OXR1_G620D_1	HLA-B18:01	DEYTREPGF	0.9944	0.9369	0.033	3.46	0.0234	10.14	1/982	1/7748
SNV	Breast	PAK1IP1_V261A_8	HLA-B18:01	FEIPEHHAI	0.9713	0.9482	0.046	7.42	0.05	22.36	1/982	1/7748
SNV	Breast	PAN2_R1118Q_7	HLA-C07:01	KRMISLQFL	0.9979	0.7226	0.0131	129.46	0.0995	9.8	1/982	1/7748
SNV	Breast	PAPOLA_R126Q_2	HLA-B18:01	DQSDFFTSF	0.9886	0.9509	0.0408	18.29	0.0798	59.51	1/982	1/7748
SNV	Breast	PARP15_E177D_7	HLA-A24:02	YWNNGADTSW	0.9948	0.6483	0.3095	109.66	0.4656	1.96	1/982	1/7748
SNV	Breast	PARP15_E177D_8	HLA-A24:02	PYWNNGADTSW	0.9997	0.7646	0.3634	117.89	0.4758	1.96	1/982	1/7748
SNV	Breast	PDE5A_E489K_3	HLA-B18:01	NDKQFLEAF	0.9333	0.968	0.1856	211.27	0.202	2.12	1/982	1/7748
SNV	Breast	PDK4_G295E_2	HLA-B44:02	REGGVPLRI	0.9669	0.5303	0.3329	140.98	0.2925	9.36	1/982	1/7748
SNV	Breast	PDZD8_N1055H_7	HLA-B18:01	QELEHNHSL	0.9422	0.7246	0.0309	12.58	0.0683	8.45	1/982	1/7748
SNV	Breast	PER3_L927V_9	HLA-C07:01	SRSSSPLQV	0.9839	0.7962	0.1251	154.64	0.1063	13.42	1/982	1/7748
SNV	Breast	PEX1_F57L_6	HLA-A24:02	SHQPALLSW	0.7782	0.6936	0.6974	406.8	0.6609	9.95	1/982	1/7748
SNV	Breast	PHF12_S524Y_8	HLA-B18:01	LEDIGCSY	0.9869	0.7017	0.5719	290.15	0.2238	17.82	1/982	1/7748
SNV	Breast	PHF20L1_E691D_6	HLA-B18:01	CEMDEDNGF	0.9745	0.9299	0.1156	391.81	0.2444	4.82	1/982	1/7748
SNV	Breast	PHKA1_L809F_3	HLA-B18:01	REFLTELY	0.9846	0.9512	0.0795	138.77	0.1777	9.45	1/982	1/7748
SNV	Breast	PHKA1_L809F_10	HLA-B18:01	NERSATVREF	0.8605	0.663	0.3177	137.47	0.1771	9.45	1/982	1/7748
SNV	Breast	PHKA1_L809F_9	HLA-C07:01	ERSATVREF	0.9981	0.6372	0.1959	362.42	0.152	9.45	1/982	1/7748
SNV	Breast	PHLDB2_D1168N_1	HLA-C07:01	NRNKRTFSY	0.9942	0.5173	0.1144	85.36	0.0809	3.79	1/982	1/7748
SNV	Breast	PHLPP1_E1100K_5	HLA-A26:01	EVFPKVMQL	0.9983	0.5355	0.049	6.75	0.0279	8.08	1/982	1/7748
SNV	Breast	PHLPP1_E1100K_5	HLA-C07:01	EVFPKVMQL	0.6655	0.5612	1.889	246.09	0.1236	8.08	1/982	1/7748
SNV	Breast	PI15_S100L_7	HLA-B44:02	DENLAKLAEAW	0.9998	0.5028	0.1519	41.44	0.1962	1.9	1/982	1/7748
SNV	Breast	PI4KB_F328L_9	HLA-C07:01	VRLAPEREL	0.9973	0.8138	0.1144	205	0.1168	37.14	1/982	1/7748
SNV	Breast	PIGR_D745N_9	HLA-B18:01	EEAEMAYKNF	0.9913	0.8775	0.1584	68.63	0.133	1.91	1/982	1/7748
SNV	Breast	PITRM1_R424Q_5	HLA-B18:01	FEDDQIEAL	0.9272	0.9354	0.1181	151.09	0.1825	37.65	1/982	1/7748
SNV	Breast	PJA1_R377W_9	HLA-B44:02	KEWIAALRW	0.9985	0.7832	0.021	1.33	0.0088	8.36	1/982	1/7748
SNV	Breast	PJA1_R377W_11	HLA-B44:02	SDKEWIAALRW	0.998	0.9026	1.0729	56.48	0.2187	8.36	1/982	1/7748
SNV	Breast	PLCL2_R681I_8	HLA-C07:01	RVFPSPMII	0.9321	0.7428	1.7054	237.96	0.1223	4.29	1/982	1/7748
SNV	Breast	PLCXD1_E213K_1	HLA-A24:02	KLWPGVPYW	0.9838	0.7659	0.5731	69.04	0.4009	8.25	1/982	1/7748
SNV	Breast	PLCXD1_E213K_1	HLA-A24:02	KLWPGVPYWW	0.9869	0.9097	0.7796	39.9	0.342	8.25	1/982	1/7748
SNV	Breast	PLD1_K528T_2	HLA-A26:01	DTNEPVQNL	0.9948	0.6945	0.3406	296.26	0.1944	1.48	1/982	1/7748
SNV	Breast	PLEKHA4_L696F_9	HLA-C07:01	HRMMTGGNF	0.9937	0.5913	0.1399	48.48	0.0643	7.5	1/982	1/7748
SNV	Breast	PLEKHS1_R148I_9	HLA-B18:01	EELSLGNKI	0.8853	0.7536	0.2089	168.27	0.1887	52.2	1/982	1/7748
SNV	Breast	PLP2_R136W_8	HLA-A24:02	AYVTFPVW	0.9986	0.8566	1.4035	59.92	0.3855	263.12	1/982	2/7748
SNV	Breast	PLXNA2_K1436N_3	HLA-B18:01	AENMLTNWF	0.8786	0.8233	0.197	356.22	0.2379	3.5	1/982	1/7748
SNV	Breast	POLA1_N555H_1	HLA-B18:01	HEIIAMAAL	0.9371	0.8684	0.033	8.54	0.0572	7.37	1/982	1/7748
SNV	Breast	POLE_R1826W_4	HLA-A24:02	RWLWSPSSL	0.9806	0.5962	0.0945	44.64	0.354	9.36	1/982	1/7748
SNV	Breast	POLE_R1826W_4	HLA-A24:02	RWLWSPSSLL	0.9938	0.6507	0.3526	356.38	0.6376	9.36	1/982	1/7748
SNV	Breast	POLE_R1826W_5	HLA-C07:01	YRWLWSPSSL	0.9993	0.7889	0.1431	327.73	0.1444	9.36	1/982	1/7748
SNV	Breast	PPFIBP1_H697Y_1	HLA-C07:01	YRKKLQLAL	0.9956	0.6488	0.0049	8.31	0.0146	9.95	1/982	1/7748
SNV	Breast	PPFIBP2_D251Y_8	HLA-B18:01	QEQVALKY	0.997	0.7638	0.046	141.57	0.1788	13.85	1/982	1/7748
SNV	Breast	PRAM1_S484L_3	HLA-C07:01	TRLAAGLHF	0.999	0.7291	0.0334	56.7	0.0698	1.48	1/982	1/7748
SNV	Breast	PRKAB1_R201W_2	HLA-A24:02	FWAPPILPPHL	0.9998	0.6171	0.5583	448.71	0.6781	10.29	1/982	2/7748
SNV	Breast	PRKAB1_R201W_4	HLA-C07:01	ERFWAPPIL	0.9968	0.7345	0.1515	61.51	0.072	10.29	1/982	1/7748
SNV	Breast	PRKACB_L173I_9	HLA-C07:01	YRDLKPENI	0.9853	0.5091	0.3182	101.79	0.0878	7.33	1/982	1/7748
SNV	Breast	PRKDC_D2937N_8	HLA-C07:01	YRSIGEYNV	0.956	0.7005	0.2886	316.41	0.1417	37.03	1/982	1/7748
SNV	Breast	PRUNE2_T1881A_3	HLA-B18:01	VEAHYTNPF	0.9908	0.9582	0.0249	36.85	0.1067	1.15	1/982	1/7748
SNV	Breast	PTBP2_R64Q_7	HLA-C07:01	SRVLHIQKL	0.9992	0.6625	0.0118	13.97	0.0286	1.86	1/982	2/7748
SNV	Breast	PTGES3_R11Q_1	HLA-C07:01	QRDYVFIEF	0.9988	0.7419	0.1663	86.98	0.0817	233.03	1/982	1/7748
SNV	Breast	PTK2_R252I_9	HLA-B18:01	FEILSPVYIF	0.991	0.8655	0.1565	262.03	0.2168	21.24	1/982	1/7748
SNV	Breast	PTPN11_D146Y_9	HLA-B18:01	RESQSHPGY	0.8793	0.8735	0.2114	195.84	0.1973	38.74	1/982	1/7748
SNV	Breast	PUS10_F261Y_5	HLA-B18:01	KEEDYLKQF	0.9585	0.9084	0.1565	321.28	0.2308	3.86	1/982	1/7748
SNV	Breast	RAB10_R70Q_9	HLA-A24:02	IWDTAGQEQF	0.9964	0.8231	0.2815	8.82	0.206	156.28	1/982	1/7748
SNV	Breast	RABEP1_S449Y_1	HLA-B18:01	YENFDTASL	0.9798	0.9769	0.2416	24.7	0.0902	76.65	1/982	1/7748
SNV	Breast	RAD50_E291D_3	HLA-B18:01	LEDKMEKVF	0.9947	0.9741	0.1196	90.6	0.1464	25.04	1/982	1/7748
SNV	Breast	RANBP9_R436I_3	HLA-B18:01	LEINPNLLF	0.9966	0.7902	0.0216	3.93	0.0302	57.78	1/982	1/7748
SNV	Breast	RAPGEF5_A310S_3	HLA-B18:01	LESSGRIYVY	0.9874	0.7294	0.164	73.72	0.1364	5.81	1/982	1/7748
SNV	Breast	RASA2_R492I_8	HLA-C07:01	LRQMATQIF	0.9847	0.6784	0.1431	337.14	0.1466	9.52	1/982	1/7748
SNV	Breast	RASGRP3_R103W_4	HLA-B18:01	EEFWEVASQ	0.8009	0.7163	0.3088	440.35	0.2526	2.96	1/982	1/7748
SNV	Breast	RASGRP3_R103W_1	HLA-B18:01	WEVASQLGY	0.9979	0.7665	0.0116	16.92	0.0773	2.96	1/982	1/7748
SNV	Breast	RBM20_S1115Y_8	HLA-C07:01	SRYVEMKYL	0.9986	0.7125	0.0607	25.71	0.0441	1.25	1/982	1/7748
SNV	Breast	REEP4_R245W_11	HLA-B44:02	REGTSRSLKVW	0.9988	0.5061	0.0846	391.23	0.3791	38.16	1/982	1/7748
SNV	Breast	RFX3_R497Q_1	HLA-C07:01	QRYTSLNHL	0.9996	0.7018	0.0124	42.2	0.0593	2.03	1/982	1/7748
SNV	Breast	RGS22_F315L_3	HLA-B18:01	EELLSSYIY	0.9966	0.8617	0.0138	1.84	0.007	12.91	1/982	1/7748
SNV	Breast	RNASEH2B_D227E_2	HLA-B18:01	DELSKYLKL	0.9948	0.8787	0.0689	17.04	0.0775	9.99	1/982	1/7748
SNV	Breast	RNF145_R303Q_7	HLA-A24:02	FYLQGYQAF	0.9963	0.6159	0.002	1.17	0.0095	17.22	1/982	1/7748
SNV	Breast	RNF145_R303Q_7	HLA-A24:02	FYLQGYQAFM	0.9866	0.6438	0.3565	153.04	0.5122	17.22	1/982	1/7748
SNV	Breast	RNF145_V211A_3	HLA-B18:01	VEAYGLLAL	0.8873	0.8486	0.1945	67.86	0.1324	17.22	1/982	1/7748
SNV	Breast	RNF145_V211A_9	HLA-B18:01	RELVQVVEAY	0.8851	0.8422	0.177	272.74	0.2195	17.22	1/982	1/7748
SNV	Breast	RNFT1_G172E_2	HLA-B18:01	TEISLGIGL	0.9365	0.6357	0.0774	11.08	0.0652	6.86	1/982	1/7748
SNV	Breast	ROBO1_R1244W_10	HLA-B44:02	DERGPTPPVW	0.9889	0.8021	0.0716	14.32	0.1306	6.39	1/982	1/7748
SNV	Breast	RORC_E395K_8	HLA-C07:01	FRALGCSKL	0.981	0.8764	0.1053	375.23	0.1544	13.06	1/982	1/7748
SNV	Breast	RPS6KA3_L467I_6	HLA-B18:01	EEIEIILRY	0.9997	0.7448	0.0101	1.08	0.0009	7.64	1/982	1/7748
SNV	Breast	RPS6KA3_L467I_7	HLA-B18:01	TEEIEIILRY	0.9964	0.8231	0.2747	7.32	0.0495	7.64	1/982	1/7748
SNV	Breast	RPS6KA3_L467I_6	HLA-B18:01	EEIEIILRYG	0.9175	0.6116	1.3711	36.04	0.1058	7.64	1/982	1/7748
SNV	Breast	RPS6KA3_V680I_4	HLA-A24:02	PWIIHWDQL	0.9406	0.7546	0.4088	83.36	0.4272	7.64	1/982	1/7748
SNV	Breast	RPS6KA3_V680I_7	HLA-C07:01	LRHPWIIHW	0.9847	0.7377	0.2138	261.17	0.1267	7.64	1/982	1/7748
SNV	Breast	RSBN1L_R622Q_10	HLA-B44:02	AEDFLEVVQQM	0.9993	0.6608	0.3772	367.34	0.3738	20.49	1/982	1/7748
SNV	Breast	RSF1_L112I_7	HLA-B18:01	MEKKGYIEM	0.9929	0.7974	0.0624	6.47	0.0443	10.79	1/982	1/7748
SNV	Breast	S1PR1_R320W_3	HLA-C07:01	MRWAFIRIM	0.9979	0.8171	0.0334	26.22	0.0446	17.2	1/982	1/7748
SNV	Breast	SAP18_D44Y_7	HLA-C07:01	GRHHRMYEF	0.9979	0.5693	0.0096	76.3	0.0777	171.09	1/982	1/7748
SNV	Breast	SCML1_C210F_10	HLA-A24:02	ATYGSSSGLF	0.9823	0.5502	1.3779	197	0.5473	5.45	1/982	1/7748
SNV	Breast	SELP_R429W_2	HLA-A24:02	VWCDNLGQW	0.9936	0.6709	0.203	39.63	0.3412	4.42	1/982	1/7748
SNV	Breast	SENP2_D364N_5	HLA-C07:01	RRTDNLLEL	0.9985	0.7809	0.0158	13.81	0.0282	17.25	1/982	2/7748
SNV	Breast	SENP6_L1047F_6	HLA-B18:01	FENPIFSF	0.9996	0.9366	0.033	3.25	0.0212	20.16	1/982	1/7748
SNV	Breast	SENP6_L1047F_1	HLA-C07:01	FSFELPMNL	0.955	0.7771	0.8919	138.05	0.102	20.16	1/982	1/7748
SNV	Breast	SENP7_H802P_8	HLA-B18:01	DELVERSPIF	0.985	0.9203	0.2848	267.68	0.2183	5.04	1/982	1/7748
SNV	Breast	SENP7_H802P_5	HLA-B18:01	VERSPIFSSF	0.9028	0.8624	0.1875	246.59	0.2126	5.04	1/982	1/7748
SNV	Breast	SERAC1_E150K_4	HLA-C07:01	TRLKAVREM	0.9992	0.6217	0.044	44.94	0.0616	3.55	1/982	1/7748
SNV	Breast	SESN3_I158M_3	HLA-B18:01	NEMNKLLAH	0.995	0.7049	0.1624	302.34	0.2266	17.18	1/982	1/7748
SNV	Breast	SESN3_I158M_9	HLA-C07:01	QRLKNLNEM	0.9985	0.6666	0.044	293.27	0.1357	17.18	1/982	1/7748
SNV	Breast	SETBP1_P1072H_6	HLA-C07:01	GQYPAHLYL	0.9268	0.5401	0.0786	362.12	0.1519	7.75	1/982	1/7748
SNV	Breast	SETX_I2345T_7	HLA-C07:01	FRNIGITTHY	0.9974	0.5528	0.2138	268.81	0.129	19.33	1/982	1/7748
SNV	Breast	SETX_K2084N_1	HLA-B18:01	NEFLDYQL	0.9938	0.9436	0.1389	289.32	0.2236	19.33	1/982	1/7748
SNV	Breast	SGMS2_S338Y_2	HLA-A24:02	LYWPPGCF	0.9991	0.7774	0.9899	204.83	0.5527	3.48	1/982	1/7748
SNV	Breast	SH3D19_S224Y_3	HLA-B18:01	EEYVGSEM	0.999	0.9098	0.1044	99.03	0.1512	18.61	1/982	1/7748
SNV	Breast	SH3D19_S224Y_4	HLA-B18:01	AEEYVGSEM	0.8794	0.8906	0.3653	486.02	0.2598	18.61	1/982	1/7748
SNV	Breast	SHOC2_K180T_5	HLA-C07:01	LRHNTLREI	0.986	0.7156	0.1643	389.78	0.1571	57.9	1/982	1/7748
SNV	Breast	SHOC2_Q559H_1	HLA-A26:01	HIVAGGPSF	0.9286	0.6291	0.0968	68.22	0.1039	57.9	1/982	1/7748
SNV	Breast	SIGLEC9_D453Y_5	HLA-B18:01	QEATYTEY	0.9981	0.919	0.0737	86.65	0.1442	4.1	1/982	1/7748
SNV	Breast	SLC30A5_R303H_8	HLA-B18:01	MEVSKCAHY	0.9977	0.8209	0.0079	55.66	0.1232	27.82	1/982	1/7748
SNV	Breast	SLC30A9_K210N_5	HLA-C07:01	FRNQNILREY	0.9982	0.5846	0.1315	450.17	0.1672	16.52	1/982	1/7748
SNV	Breast	SLC35B4_E150D_2	HLA-B18:01	SDNDGFQAF	0.5066	0.8785	0.1075	88.24	0.1451	6.54	1/982	1/7748
SNV	Breast	SLC36A4_D260Y_6	HLA-C07:01	VRNMPYPHNL	0.9991	0.7329	0.3081	177.59	0.1114	2.84	1/982	1/7748
SNV	Breast	SLC39A1_G5E_8	HLA-B44:02	WEEPELLVW	0.9942	0.7293	0.0305	9.13	0.1067	118.15	1/982	1/7748
SNV	Breast	SLC39A1_G5E_8	HLA-B18:01	WEEPELLVW	0.969	0.8886	0.2416	226.48	0.2068	118.15	1/982	1/7748
SNV	Breast	SLC44A1_S652L_9	HLA-C07:01	SRELKPMAL	0.9869	0.728	0.1476	34.17	0.0517	70.23	1/982	1/7748
SNV	Breast	SLC6A16_S340F_9	HLA-A26:01	DVYNMSVWF	0.9896	0.5983	0.0389	70.46	0.1056	1.36	1/982	1/7748
SNV	Breast	SLC6A16_S340F_3	HLA-A24:02	VWFLAGGQVL	0.9832	0.69	0.2527	208.28	0.555	1.36	1/982	1/7748
SNV	Breast	SLC9A9_P309L_1	HLA-A24:02	LMLETGLFF	0.9594	0.5264	0.1915	203.23	0.5516	3.95	1/982	1/7748
SNV	Breast	SMC1A_K420N_4	HLA-B18:01	TEANIKQKL	0.986	0.8048	0.2159	264.42	0.2174	22.22	1/982	1/7748
SNV	Breast	SMG1_R2660Q_6	HLA-A24:02	IFQKHQIEQW	0.9875	0.6755	0.6533	433.35	0.672	13.86	1/982	1/7748
SNV	Breast	SMG1_R2660Q_2	HLA-B44:02	HQIEQWKTW	0.9523	0.8398	0.094	98.09	0.2619	13.86	1/982	2/7748
SNV	Breast	SNX14_R238I_3	HLA-C07:01	SRIDELHYL	0.9996	0.6664	0.0031	4.32	0.0086	39.92	1/982	1/7748
SNV	Breast	SNX6_L229I_8	HLA-B18:01	FEHERTFIL	0.9824	0.93	0.0408	30.34	0.0989	42.83	1/982	1/7748
SNV	Breast	SNX6_L229I_6	HLA-B18:01	HERTFILEY	0.9966	0.9166	0.0049	1.49	0.0046	42.83	1/982	1/7748
SNV	Breast	SOGA1_R1261H_3	HLA-C07:01	ARHLGVPVV	0.9804	0.8383	0.1348	290.8	0.1351	30.17	1/982	1/7748
SNV	Breast	SPARCL1_S59F_8	HLA-B18:01	NEKETAVF	0.9993	0.8585	0.0784	84.04	0.1428	172.48	1/982	1/7748
SNV	Breast	SPARCL1_S59F_10	HLA-B18:01	EENEKETAVF	0.9887	0.792	0.1321	136.55	0.1767	172.48	1/982	1/7748
SNV	Breast	SPATA18_S496L_9	HLA-C07:01	TRRGAFWNL	0.9876	0.6508	0.076	186.1	0.1132	3.94	1/982	1/7748
SNV	Breast	SPEN_R637Q_5	HLA-B18:01	YESVQTPGTY	0.9486	0.564	0.1196	57.74	0.1247	22.3	1/982	1/7748
SNV	Breast	SPI1_E67D_6	HLA-B18:01	FESFADNNF	0.9899	0.9508	0.0425	13.74	0.0707	37.18	1/982	1/7748
SNV	Breast	SPIN1_M162I_6	HLA-C07:01	ARAPVINTW	0.9919	0.8248	0.2164	94.72	0.085	83.14	1/982	1/7748
SNV	Breast	SPIN1_M162I_6	HLA-C07:01	ARAPVINTWF	0.9987	0.7217	0.1086	326.63	0.1441	83.14	1/982	1/7748
SNV	Breast	SPTLC2_R543W_4	HLA-C07:01	SRHWLVPLL	0.9989	0.8047	0.0135	14.76	0.0302	80.16	1/982	2/7748
SNV	Breast	SQLE_V133M_9	HLA-A26:01	EVIIVGAGM	0.9961	0.587	0.0275	2.59	0.009	15.97	1/982	1/7748
SNV	Breast	STAG1_F571V_4	HLA-B18:01	TEHVIITL	0.999	0.886	0.0808	371.12	0.2407	11.64	1/982	1/7748
SNV	Breast	STAG1_M321V_9	HLA-B18:01	EEIGVWMKV	0.9523	0.9207	0.1746	136.98	0.1769	11.64	1/982	1/7748
SNV	Breast	STAG1_M321V_9	HLA-B18:01	EEIGVWMKVY	0.9971	0.8836	0.1296	8.27	0.0556	11.64	1/982	1/7748
SNV	Breast	STIM1_E434K_7	HLA-C07:01	HRWQQIKIL	0.9983	0.6379	0.0569	15.64	0.0317	25.66	1/982	2/7748
SNV	Breast	STK16_H140N_5	HLA-B18:01	LEAINAKGY	0.9927	0.8189	0.0824	63.19	0.129	21.14	1/982	1/7748
SNV	Breast	STK35_F248L_8	HLA-B44:02	VELALAELW	0.9986	0.7056	0.0027	1.53	0.0203	31.62	1/982	1/7748
SNV	Breast	STK35_F248L_3	HLA-B44:02	AELWALTSL	0.9848	0.6453	0.1851	53.08	0.2139	31.62	1/982	1/7748
SNV	Breast	STK35_F248L_3	HLA-B18:01	AELWALTSL	0.8177	0.9706	0.184	371.75	0.2408	31.62	1/982	1/7748
SNV	Breast	SVEP1_D2571E_5	HLA-B18:01	VEGAEYSY	0.9935	0.9574	0.2416	491.18	0.2605	2.61	1/982	1/7748
SNV	Breast	SVEP1_D2571E_2	HLA-B18:01	AEYSYGAIIIY	0.9875	0.7049	0.5148	360.89	0.2388	2.61	1/982	1/7748
SNV	Breast	SVEP1_T3301N_5	HLA-C07:01	TRCENPLEF	0.9974	0.8187	0.0786	162.27	0.1081	2.61	1/982	1/7748
SNV	Breast	SYF2_K71T_4	HLA-B44:02	WEATKARLEW	0.9903	0.6286	0.039	5.27	0.0833	41.1	1/982	1/7748
SNV	Breast	SYK_Y28D_4	HLA-B44:02	AEDDLVQGGM	0.9459	0.675	0.2205	168.65	0.3077	10.75	1/982	1/7748
SNV	Breast	SYNE1_S1567Y_10	HLA-B18:01	EENLRKIQQY	0.9655	0.6884	0.2416	468.43	0.2571	2.36	1/982	1/7748
SNV	Breast	SYNE2_D1124Y_9	HLA-B18:01	LERYDTYRY	0.9948	0.9158	0.4435	11.78	0.0667	5.58	1/982	1/7748
SNV	Breast	SYNE2_D1124Y_3	HLA-C07:01	YRYILEHHL	0.9994	0.822	0.0027	5.18	0.0097	5.58	1/982	1/7748
SNV	Breast	SYNJ2_S626L_8	HLA-C07:01	HRYILLTL	0.9999	0.5122	0.3812	383.04	0.1559	17.95	1/982	2/7748
SNV	Breast	TBC1D12_G700E_8	HLA-B18:01	EEFLFRTEL	0.9862	0.885	0.0481	4.31	0.0325	6.25	1/982	1/7748
SNV	Breast	TBC1D12_G700E_2	HLA-B18:01	TELGILRLY	0.999	0.8317	0.0201	1.75	0.0064	6.25	1/982	1/7748
SNV	Breast	TBC1D25_S433L_9	HLA-A24:02	RMLEVTWSL	0.9543	0.7634	0.1457	193.71	0.545	14.25	1/982	2/7748
SNV	Breast	TBC1D8_R63Q_7	HLA-C07:01	ARVAPFQIL	0.9996	0.5897	0.0569	115.39	0.0935	14.4	1/982	1/7748
SNV	Breast	TCAIM_D119N_3	HLA-C07:01	TRNLLSTVL	0.9984	0.6481	0.1144	44.93	0.0616	7.22	1/982	1/7748
SNV	Breast	TFCP2_K181N_6	HLA-A24:02	LWDPANRTSVF	0.9996	0.5253	0.4053	119.91	0.4781	34.6	1/982	1/7748
SNV	Breast	TGIF1_R228I_9	HLA-C07:01	RRLLPDMLI	0.9907	0.6365	0.2061	220.41	0.1195	30.94	1/982	1/7748
SNV	Breast	TGM2_R651I_6	HLA-B18:01	EEVKVIMDL	0.9428	0.8648	0.0784	19.53	0.082	17.32	1/982	1/7748
SNV	Breast	THNSL1_V330A_1	HLA-C07:01	ARHLSGNQF	0.9924	0.7702	0.0569	177.7	0.1115	5.87	1/982	1/7748
SNV	Breast	TIAM1_R1138H_5	HLA-C07:01	YYADHFKLY	0.6275	0.6409	0.5081	47.4	0.0635	2.48	1/982	1/7748
SNV	Breast	TIAM1_S59G_4	HLA-C07:01	TRSGSTPSI	0.9927	0.5991	0.2249	408.65	0.1604	2.48	1/982	1/7748
SNV	Breast	TJP1_D1287Y_9	HLA-B18:01	LETKKDVNY	0.9537	0.9336	0.1471	177.74	0.1918	23.3	1/982	1/7748
SNV	Breast	TLL1_E661D_8	HLA-C07:01	YRISVKFDF	0.9979	0.506	0.0334	14.6	0.03	1.13	1/982	1/7748
SNV	Breast	TLR7_L404F_6	HLA-B18:01	LEVLDFGTNF	0.9721	0.9047	0.244	79.19	0.1399	6.02	1/982	1/7748
SNV	Breast	TMCC3_K161N_3	HLA-C07:01	HLNDIHRSL	0.64	0.5248	1.1261	411.65	0.1609	2.56	1/982	1/7748
SNV	Breast	TMEM181_L493F_7	HLA-A24:02	PYVDLRFKFL	0.9848	0.5427	0.5101	170.69	0.5274	48.04	1/982	1/7748
SNV	Breast	TMEM181_L493F_2	HLA-A24:02	RFKFLTALTF	0.9881	0.7752	0.416	99.68	0.4523	48.04	1/982	1/7748
SNV	Breast	TMEM181_L493F_3	HLA-C07:01	LRFKFLTAL	0.9982	0.7595	0.005	31.95	0.0495	48.04	1/982	1/7748
SNV	Breast	TMEM56_S35Y_3	HLA-C07:01	KVYPGFNSL	0.9864	0.6865	1.034	261.17	0.1267	2.02	1/982	1/7748
SNV	Breast	TNC_A738V_9	HLA-B18:01	VEWDPLDIVF	0.9806	0.9181	0.0975	33.45	0.1029	81.31	1/982	1/7748
SNV	Breast	TNC_S1725L_4	HLA-B44:02	TENLATVSW	0.9995	0.6748	0.001	1.1	0.0029	81.31	1/982	1/7748
SNV	Breast	TNC_S1725L_4	HLA-B18:01	TENLATVSW	0.9877	0.9074	0.1898	13.69	0.0705	81.31	1/982	1/7748
SNV	Breast	TNFAIP6_E156K_4	HLA-B18:01	NEYKDNQICY	0.9922	0.7883	0.0749	10.11	0.0629	25.38	1/982	1/7748
SNV	Breast	TP53BP2_R74Q_10	HLA-B18:01	NERMFDVLQQF	0.997	0.7975	0.5274	78.17	0.1393	14.55	1/982	1/7748
SNV	Breast	TPD52_G112V_5	HLA-C07:01	KRKLVINSL	0.9971	0.656	0.0265	140.96	0.1028	88.92	1/982	1/7748
SNV	Breast	TRA2A_R255Q_7	HLA-B18:01	YEDYDYQY	0.9947	0.8162	0.5685	28.68	0.0965	64.49	1/982	1/7748
SNV	Breast	TRAF3IP1_S689L_9	HLA-C07:01	MVYSINLTL	0.7807	0.6641	1.7729	400.9	0.1591	30.65	1/982	2/7748
SNV	Breast	TRAK2_S373Y_9	HLA-A24:02	SYGAFTGEYL	0.992	0.648	0.3186	97.5	0.4492	19.22	1/982	1/7748
SNV	Breast	TRANK1_K564N_4	HLA-C07:01	KRVNKLLDL	0.9901	0.6422	0.048	239.41	0.1226	12.56	1/982	1/7748
SNV	Breast	TRMT6_R238W_9	HLA-A24:02	LYPGGGPVW	0.9929	0.9593	0.1154	2	0.0562	14.15	1/982	1/7748
SNV	Breast	TRMT6_R238W_10	HLA-A24:02	QLYPGGGPVW	0.9223	0.806	1.0268	18.78	0.269	14.15	1/982	1/7748
SNV	Breast	TROVE2_L350V_3	HLA-A26:01	EIVKALDAAF	0.9915	0.5364	0.2672	91.16	0.1188	12.21	1/982	1/7748
SNV	Breast	TSPAN1_A103T_4	HLA-A26:01	EVATAVVAL	0.9968	0.8176	0.0486	17.13	0.0532	83.29	1/982	1/7748
SNV	Breast	TSR1_D428E_10	HLA-B18:01	YEYDDMEHEEF	0.9993	0.9385	0.137	324.98	0.2316	20.49	1/982	1/7748
SNV	Breast	TTC21B_A1267T_6	HLA-C07:01	NRTNPTVGY	0.9941	0.6578	0.3229	435.96	0.165	5.25	1/982	1/7748
SNV	Breast	TTLL1_D59Y_3	HLA-B18:01	SDYQIVNHF	0.8277	0.7997	0.0599	100.28	0.1522	15.87	1/982	1/7748
SNV	Breast	TTLL1_D59Y_10	HLA-B18:01	VEAGYRLSDY	0.9102	0.883	0.4001	448.93	0.254	15.87	1/982	1/7748
SNV	Breast	TTLL1_D59Y_6	HLA-C07:01	YRLSDYQIV	0.9727	0.702	0.3229	375.05	0.1544	15.87	1/982	1/7748
SNV	Breast	TUBAL3_K48R_2	HLA-C07:01	ARMEHTNASF	0.9992	0.8039	0.0131	451.16	0.1674	2.09	1/982	1/7748
SNV	Breast	TUBGCP3_E445K_7	HLA-B18:01	LEDTYHKFF	0.9828	0.8617	0.2159	303.32	0.2268	8.24	1/982	1/7748
SNV	Breast	TUBGCP3_E445K_9	HLA-B18:01	GELEDTYHKF	0.9682	0.9086	0.137	424.93	0.25	8.24	1/982	1/7748
SNV	Breast	UACA_D902Y_8	HLA-B18:01	QEFVKIKY	0.9987	0.9065	0.0401	12.57	0.0683	11.34	1/982	1/7748
SNV	Breast	UBA1_E951K_6	HLA-A24:02	QYYNQKWTLW	0.9977	0.8136	0.1678	7.13	0.1835	171.58	1/982	1/7748
SNV	Breast	UBE4B_R778H_1	HLA-C07:01	HRLRAIREL	0.9968	0.5818	0.0406	19.45	0.0372	15.01	1/982	1/7748
SNV	Breast	UBXN4_S98Y_9	HLA-B18:01	LEVIAGSVY	0.992	0.7954	0.0131	5.79	0.0398	134.8	1/982	1/7748
SNV	Breast	UGGT1_R1389Q_1	HLA-B44:02	QREMDGYRFW	0.9187	0.6368	1.8158	1.09	0.0027	25.01	1/982	1/7748
SNV	Breast	UGGT1_R1389Q_2	HLA-B44:02	SQREMDGYRFW	0.9985	0.6476	1.6091	1.31	0.0084	25.01	1/982	1/7748
SNV	Breast	URI1_E170K_8	HLA-B18:01	EEIKCDFKF	0.9941	0.7309	0.0261	11.72	0.0666	50.94	1/982	1/7748
SNV	Breast	USP40_N16H_9	HLA-B18:01	EEYSTVSNHQY	0.9987	0.8056	0.0808	27.37	0.0946	18.59	1/982	1/7748
SNV	Breast	USP6NL_R96Q_7	HLA-B18:01	TEKFHRQIY	0.9864	0.869	0.0558	38.78	0.1088	4.07	1/982	1/7748
SNV	Breast	VASH1_T235M_9	HLA-C07:01	MYKPPAFRM	0.5675	0.7077	0.8552	167.82	0.1093	13.39	1/982	1/7748
SNV	Breast	VASH1_T235M_3	HLA-C07:01	FRMLSELVL	0.9987	0.8762	0.0498	19.76	0.0376	13.39	1/982	1/7748
SNV	Breast	VPS13D_S1433Y_10	HLA-B18:01	VEIKDIKLYY	0.9885	0.8392	0.177	25.38	0.0914	11.2	1/982	1/7748
SNV	Breast	VPS8_A793T_8	HLA-B18:01	REFLNVLTL	0.8547	0.886	0.1094	30.28	0.0988	10.89	1/982	1/7748
SNV	Breast	VWA8_M97L_4	HLA-A24:02	RWILQKDLL	0.9428	0.5463	0.3186	84.7	0.4295	15.53	1/982	1/7748
SNV	Breast	WDR34_D104N_3	HLA-A24:02	QYNIPRLAAF	0.9965	0.6576	0.2061	7.25	0.1854	90.24	1/982	1/7748
SNV	Breast	WDR46_D321N_7	HLA-C07:01	ARAGRLNVM	0.9981	0.7572	0.0498	25.89	0.0443	44.11	1/982	1/7748
SNV	Breast	WDR62_V497G_8	HLA-A26:01	DVKAGVRGM	0.9459	0.5737	0.3787	55.26	0.0938	1.33	1/982	1/7748
SNV	Breast	XDH_R228Q_1	HLA-A24:02	QFEGERVTW	0.9665	0.6757	0.886	115.46	0.4728	13.23	1/982	1/7748
SNV	Breast	XPO1_R845I_7	HLA-B18:01	EEYPEHITNF	0.9886	0.9184	0.0838	2.58	0.0123	51.72	1/982	1/7748
SNV	Breast	XPO1_R845I_7	HLA-B18:01	EEYPEHITNFF	0.9976	0.8976	0.2004	35.13	0.1048	51.72	1/982	1/7748
SNV	Breast	XRCC4_N196K_6	HLA-C07:01	IRSLHKKLL	0.978	0.6082	0.1555	340.95	0.1475	5.66	1/982	1/7748
SNV	Breast	YWHAZ_S210L_3	HLA-B18:01	EELYKDSTL	0.8839	0.8625	0.2701	455.31	0.255	237.98	1/982	2/7748
SNV	Breast	ZC3H11A_R582W_10	HLA-B44:02	REKSVLTPLW	0.988	0.5771	0.0227	2.51	0.0463	44.47	1/982	1/7748
SNV	Breast	ZC3H6_F332L_7	HLA-B18:01	NEFPCKLY	0.9993	0.9123	0.0305	16.39	0.0763	2.34	1/982	1/7748
SNV	Breast	ZC3H7A_R44I_6	HLA-C07:01	LRALVINLF	0.9988	0.6295	0.1053	122.65	0.0967	14.84	1/982	1/7748
SNV	Breast	ZC3HAV1_F253L_2	HLA-A24:02	RLFQGSQEF	0.9899	0.6991	0.5068	75.02	0.4125	25.09	1/982	1/7748
SNV	Breast	ZCWPW1_S368Y_5	HLA-B44:02	GETVYRAW	0.9997	0.5533	0.3364	21.38	0.1545	7.44	1/982	1/7748
SNV	Breast	ZCWPW1_S368Y_1	HLA-C07:01	YRAWIPVNM	0.9996	0.8077	0.008	2.33	0.005	7.44	1/982	1/7748
SNV	Breast	ZCWPW1_S368Y_1	HLA-C07:01	YRAWIPVNML	0.9993	0.7516	0.2649	196.08	0.1151	7.44	1/982	1/7748
SNV	Breast	ZNF106_D313N_6	HLA-B18:01	SEGLLNFNF	0.9805	0.9528	0.0644	88.05	0.145	17.42	1/982	1/7748
SNV	Breast	ZNF197_R866I_9	HLA-C07:01	NRNLIEHQI	0.9971	0.6613	0.2249	420.95	0.1625	12.12	1/982	3/7748
SNV	Breast	ZNF273_G464V_4	HLA-B18:01	EECVSAFRAF	0.9241	0.8438	0.2041	45.08	0.1148	3.49	1/982	1/7748
SNV	Breast	ZNF274_S523F_8	HLA-C07:01	FRNPRYFF	0.9999	0.5206	0.5731	146.64	0.1043	4.09	1/982	1/7748
SNV	Breast	ZNF274_S523F_8	HLA-C07:01	FRNPRYFFV	0.9599	0.563	0.0975	14.94	0.0305	4.09	1/982	1/7748
SNV	Breast	ZNF324B_A21V_9	HLA-B18:01	EEWGLLDTV	0.7636	0.9848	0.1684	119.8	0.1668	3.67	1/982	1/7748
SNV	Breast	ZNF334_N515T_8	HLA-C07:01	KRMNTKETL	0.9981	0.77	0.0313	131.73	0.1003	2.44	1/982	1/7748
SNV	Breast	ZNF382_R238I_5	HLA-C07:01	HRGEITFEY	0.9967	0.7061	0.0786	58.11	0.0705	1.69	1/982	1/7748
SNV	Breast	ZNF468_E98K_9	HLA-B18:01	IEKDIHGFKF	0.9734	0.891	0.1249	102.64	0.1541	12.65	1/982	1/7748
SNV	Breast	ZNF577_S71L_8	HLA-C07:01	YRGTKPDLL	0.9879	0.6114	0.1476	86.43	0.0814	5.7	1/982	1/7748
SNV	Breast	ZNF587B_E145D_6	HLA-B18:01	NEHIGDKPY	0.9967	0.6527	0.0249	14.7	0.0728	16.88	1/982	1/7748
SNV	Breast	ZNF600_R53I_3	HLA-B18:01	DEINGHEAPM	0.9869	0.8251	0.4559	154.17	0.1837	5.28	1/982	1/7748
SNV	Breast	ZNF638_L1048I_7	HLA-C07:01	NRNKAIIQL	0.9988	0.6809	0.0621	11.26	0.0222	40.11	1/982	1/7748
SNV	Breast	ZNF649_R109I_5	HLA-B18:01	YEHGITLKSY	0.998	0.6972	0.0372	4.11	0.0313	13.73	1/982	1/7748
SNV	Breast	ZNF649_R109I_7	HLA-C07:01	QRYEHGITL	0.9995	0.6545	0.0027	1.79	0.0034	13.73	1/982	1/7748
SNV	Breast	ZSWIM3_D617N_4	HLA-C07:01	GRNNMIQDL	0.9899	0.5818	0.2011	450.83	0.1673	3.01	1/982	1/7748
SNV	Breast	ZUFSP_R291K_9	HLA-B18:01	MEIEVNRGKM	0.9135	0.5595	0.2159	355.46	0.2377	10.97	1/982	1/7748
SNV	Breast	ARRDC3_N17H_2	HLA-B38:01	LHDSNVPVY	0.6323	0.8653	0.3446	411.24	0.1622	47.33	1/982	1/7748
SNV	Breast	COL12A1_T827M_6	HLA-C12:03	VSDPTMSTM	0.8825	0.951	0.1896	28.99	0.2701	186.11	1/982	1/7748
SNV	Breast	COL12A1_T827M_7	HLA-C12:03	RVSDPTMSTM	0.9983	0.9538	0.2956	123.96	0.5796	186.11	1/982	1/7748
SNV	Breast	CUL4B_R369Q_6	HLA-B38:01	DRSLLQSLL	0.9819	0.973	0.1214	327.04	0.1445	56.25	1/982	1/7748
SNV	Breast	CUL4B_R369Q_4	HLA-C12:03	SLLQSLLSM	0.9033	0.985	0.8424	320.33	0.9008	56.25	1/982	2/7748
SNV	Breast	HEY1_S262T_7	HLA-C12:03	SSVASLTAF	0.945	0.9764	0.0334	13.3	0.157	9.18	1/982	1/7748
SNV	Breast	HOXA5_S104F_10	HLA-B07:02	SPQPDPLPCF	0.9743	0.528	0.2475	406.87	0.3838	2.04	1/982	1/7748
SNV	Breast	SIPA1L1_V368L_6	HLA-C12:03	ASAAALASL	0.996	0.991	0.055	27.51	0.2598	14.53	1/982	1/7748
SNV	Breast	SIPA1L1_V368L_5	HLA-C12:03	SAAALASLV	0.9628	0.9787	0.1451	211.74	0.7546	14.53	1/982	1/7748
SNV	Breast	FLNB_S833N_7	HLA-B15:01	SQEIPANPF	0.9937	0.9034	0.3661	235.41	0.3926	133.36	1/982	1/7748
SNV	Breast	GGT1_R315H_4	HLA-C07:02	TYHHIVEAF	0.8505	0.9584	0.0055	15.98	0.0683	7.36	1/982	1/7748
SNV	Breast	KLF12_T15I_8	HLA-B15:01	KTIKNINIF	0.9961	0.8055	0.2963	12.09	0.1081	10.16	1/982	1/7748
SNV	Breast	KLF12_T15I_2	HLA-C07:02	NIFENRMLM	0.654	0.8495	1.3525	331.72	0.3369	10.16	1/982	1/7748
SNV	Breast	KLF12_T15I_1	HLA-C04:01	IFENRMLML	0.9885	0.6287	0.0848	20.32	0.0365	10.16	1/982	1/7748
SNV	Breast	NCKAP1_H522Y_9	HLA-B15:01	KMMNTIIFY	0.9943	0.9846	0.0325	8.86	0.0851	29.43	1/982	1/7748
SNV	Breast	SH2D3C_V58G_1	HLA-B15:01	GTVPKSPPAY	0.9952	0.8237	0.6879	267.77	0.4123	9.13	1/982	1/7748
SNV	Breast	TTC37_A965S_1	HLA-B15:01	SQVILNKY	0.9995	0.584	0.501	99.6	0.2861	30.15	1/982	1/7748
SNV	Breast	BGN_I88F_9	HLA-B15:01	GLKSVPKEF	0.9985	0.8743	0.2722	14.11	0.1173	491.95	1/982	1/7748
SNV	Breast	DNAH5_A1205T_8	HLA-B58:01	YTADLKFTL	0.9455	0.8547	0.1555	52.16	0.3073	1.75	1/982	1/7748
SNV	Breast	DNAH5_A1205T_1	HLA-B58:01	TLTAETKAW	0.8429	0.9787	0.4649	394.36	0.6092	1.75	1/982	1/7748
SNV	Breast	DNAH5_A1205T_2	HLA-B58:01	FTLTAETKAW	0.9989	0.964	0.1509	13.25	0.1626	1.75	1/982	1/7748
SNV	Breast	DNAH5_A1205T_8	HLA-C03:03	YTADLKFTL	0.9998	0.9731	0.0209	2.6	0.0275	1.75	1/982	1/7748
SNV	Breast	DOCK11_T940A_4	HLA-C03:03	LATAMIAIL	0.9986	0.9879	0.2585	125.57	0.2981	3.59	1/982	1/7748
SNV	Breast	FZD7_S293P_3	HLA-A02:01	FLPGCYFMV	0.9927	0.8304	0.0077	102.96	0.3953	12.48	1/982	1/7748
SNV	Breast	IGKV1-5_P66H_9	HLA-B15:01	YQQKPGKAH	0.9878	0.8067	0.5464	495.7	0.5185	352.75	1/982	1/7748
SNV	Breast	KMT2D_R3626W_9	HLA-B58:01	ALSPSQSPW	0.9034	0.9665	0.1358	86.32	0.3734	10.74	1/982	1/7748
SNV	Breast	KMT2D_R3626W_10	HLA-B58:01	LALSPSQSPW	0.9981	0.9678	0.1301	6.19	0.1036	10.74	1/982	1/7748
SNV	Breast	OXR1_W809L_2	HLA-B58:01	KLTGDNMFF	0.5782	0.8142	0.5759	480.86	0.6531	88.91	1/982	1/7748
SNV	Breast	OXR1_W809L_2	HLA-B15:01	KLTGDNMFF	0.8938	0.7782	0.3175	357.65	0.4614	88.91	1/982	1/7748
SNV	Breast	PUS1_N244S_8	HLA-B58:01	ACYKGTHSF	0.7123	0.9471	0.6736	488.1	0.6564	11.84	1/982	1/7748
SNV	Breast	PUS1_N244S_9	HLA-B58:01	LACYKGTHSF	0.9774	0.9607	0.854	226.85	0.5114	11.84	1/982	1/7748
SNV	Breast	PUS1_N244S_8	HLA-B15:01	ACYKGTHSF	0.9647	0.9173	0.5175	149.75	0.3336	11.84	1/982	1/7748
SNV	Breast	RCBTB1_L253S_6	HLA-B58:01	LTDEGSLYAW	0.9991	0.9941	0.1333	10.92	0.1469	10.91	1/982	1/7748
SNV	Breast	RCBTB1_L253S_7	HLA-B15:01	ALTDEGSLY	0.9899	0.9434	0.2138	12.66	0.1109	10.91	1/982	1/7748
SNV	Breast	RCBTB1_L253S_1	HLA-B15:01	SLYAWGANTY	0.9997	0.9932	0.1151	5.65	0.0558	10.91	1/982	1/7748
SNV	Breast	RCN1_N295Y_9	HLA-B15:01	HLVYESDKY	0.9357	0.7708	0.7588	105.76	0.2916	26.6	1/982	1/7748
SNV	Breast	REL_E356K_5	HLA-B58:01	GSIGKGRYF	0.9917	0.7012	0.7202	47.93	0.2963	1.37	1/982	1/7748
SNV	Breast	REL_E356K_5	HLA-B15:01	GSIGKGRYF	0.9729	0.6429	1.218	270.12	0.4138	1.37	1/982	1/7748
SNV	Breast	SETDB1_R1059Q_7	HLA-B15:01	VVTESSQNY	0.9856	0.8379	0.4557	45.01	0.2065	15.78	1/982	1/7748
SNV	Breast	SETDB1_R1059Q_8	HLA-B15:01	SVVTESSQNY	0.9939	0.9073	0.8738	267.6	0.4122	15.78	1/982	1/7748
SNV	Breast	ZNF232_R379M_1	HLA-B15:01	MIHSGEKPY	0.999	0.8705	0.0665	44.42	0.2051	16.05	1/982	1/7748
SNV	Breast	ZNF232_R379M_2	HLA-B15:01	QMIHSGEKPY	0.9996	0.8925	0.2855	315.67	0.4402	16.05	1/982	1/7748
SNV	Breast	ZNF292_S851F_9	HLA-B15:01	AQLNSSGDF	0.9914	0.7047	0.2672	42.14	0.1995	5.94	1/982	1/7748
SNV	Breast	ZSWIM8_Q375K_1	HLA-B58:01	KCLTYEQITGW	0.9977	0.9935	0.3951	14.49	0.1703	14.48	1/982	1/7748
SNV	Breast	ZSWIM8_Q375K_5	HLA-B15:01	ILTDKCLTY	0.9939	0.6946	0.1084	112.54	0.2974	14.48	1/982	1/7748
SNV	Breast	CEP170_P329R_1	HLA-B44:03	RENKVADW	0.9986	0.8894	0.2736	154.27	0.3166	16.05	1/982	1/7748
SNV	Breast	CEP170_P329R_1	HLA-B44:03	RENKVADWL	0.7884	0.7592	0.3661	95.71	0.2802	16.05	1/982	1/7748
SNV	Breast	CFAP44_S73I_7	HLA-C05:01	RLEGSLISF	0.9971	0.9299	0.6214	188.38	0.2818	4.41	1/982	1/7748
SNV	Breast	HUWE1_E2805Q_6	HLA-A02:01	LLMPVQPEEL	0.9911	0.8009	0.5905	23.51	0.2311	43.62	1/982	1/7748
SNV	Breast	MUM1_L46P_4	HLA-A02:01	ILSPEEKIKV	0.985	0.6565	0.7874	108.06	0.402	12.21	1/982	1/7748
SNV	Breast	TCN2_N402K_6	HLA-A02:01	LLRDPKTPLL	0.6793	0.5516	1.128	187.38	0.4962	17.56	1/982	1/7748
SNV	Breast	TCN2_N402K_5	HLA-C04:01	LRDPKTPLL	0.9983	0.8544	0.0616	151.39	0.0859	17.56	1/982	1/7748
SNV	Breast	TCN2_N402K_5	HLA-C05:01	LRDPKTPLL	0.9992	0.948	0.311	403.81	0.3764	17.56	1/982	1/7748
SNV	Breast	TCN2_N402K_6	HLA-C05:01	LLRDPKTPLL	0.9961	0.9451	1.5089	15.95	0.1127	17.56	1/982	1/7748
SNV	Breast	TMEM131_V594L_7	HLA-A02:01	GLSIELLAV	0.9949	0.5156	0.1848	11.28	0.1682	17.71	1/982	1/7748
SNV	Breast	UCK2_L148P_6	HLA-B44:03	QEVRDPFQM	0.9965	0.7913	0.1128	30.82	0.1839	56.09	1/982	1/7748
SNV	Breast	UCK2_L148P_4	HLA-C04:01	VRDPFQMKL	0.9836	0.8168	0.0861	147.03	0.0848	56.09	1/982	1/7748
SNV	Breast	UCK2_L148P_4	HLA-C05:01	VRDPFQMKL	0.9857	0.9172	0.3564	428.73	0.3839	56.09	1/982	1/7748
SNV	Breast	ABCF1_S777F_1	HLA-A02:01	FIDALGEAI	0.9477	0.6646	0.5055	62.47	0.331	153.03	1/982	2/7748
SNV	Breast	ABCF1_S777F_1	HLA-C02:02	FIDALGEAI	0.6259	0.984	0.7634	358.55	0.3816	153.03	1/982	1/7748
SNV	Breast	ANKRD6_R13H_5	HLA-A02:01	ALSEHLLVA	0.9988	0.6637	0.1304	11.97	0.173	1.48	1/982	1/7748
SNV	Breast	ANKRD6_R13H_5	HLA-A02:01	ALSEHLLVAA	0.9981	0.6397	0.5933	366.34	0.6068	1.48	1/982	1/7748
SNV	Breast	ANKRD6_R13H_3	HLA-B15:01	SEHLLVAAY	0.9623	0.9307	0.1491	377.52	0.4706	1.48	1/982	1/7748
SNV	Breast	CDKN2AIP_S369L_8	HLA-C02:02	STSQVAALL	0.565	0.9618	0.1299	188.93	0.2568	73.18	1/982	1/7748
SNV	Breast	COL6A3_T1253N_1	HLA-B15:01	NLIERLVDY	0.9988	0.5969	0.423	284.59	0.4226	201.75	1/982	1/7748
SNV	Breast	COL6A3_T1253N_4	HLA-C02:02	YVRNLIERL	0.7522	0.9821	0.6219	50.19	0.105	201.75	1/982	1/7748
SNV	Breast	DNAJC13_R799T_8	HLA-B27:05	MRAFNIDTEL	0.9994	0.909	0.4429	6.91	0.1651	43.48	1/982	1/7748
SNV	Breast	DNAJC13_R799T_7	HLA-C02:02	RAFNIDTEL	0.9737	0.9876	0.0954	34.64	0.0774	43.48	1/982	1/7748
SNV	Breast	DNAJC7_L374M_9	HLA-B15:01	LLKNAQLEM	0.9995	0.9379	0.3244	209.96	0.3777	37.48	1/982	1/7748
SNV	Breast	DSEL_N587T_4	HLA-A02:01	LLLTSQTLL	0.9601	0.5571	0.2899	374.38	0.6116	1.05	1/982	1/7748
SNV	Breast	MCM3AP_R469H_7	HLA-B27:05	QRIFTRHSK	0.9994	0.8162	0.2193	329.08	0.5468	34.35	1/982	1/7748
SNV	Breast	PCDH18_I123F_7	HLA-A02:01	HLQLFHFEV	0.9845	0.6193	0.1759	433.8	0.6441	8.18	1/982	1/7748
SNV	Breast	PCDH18_I123F_5	HLA-A02:01	QLFHFEVEV	0.9985	0.547	0.043	2.27	0.0514	8.18	1/982	1/7748
SNV	Breast	PDE4D_T635M_2	HLA-C04:01	WMDRIMEEF	0.9993	0.911	0.2006	351.87	0.129	1.74	1/982	1/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:05	ARHGGWTTK	0.9983	0.8261	0.1474	11.97	0.2093	14.88	11/982	17/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:05	ARHGGWTTKM	0.9998	0.666	0.0388	24.5	0.2651	14.88	11/982	17/7748
SNV	Breast	PMS1_F921V_4	HLA-B27:05	GRPVFHHLTY	0.9999	0.891	0.76	22.57	0.258	17.51	1/982	1/7748
SNV	Breast	PROCR_F130L_6	HLA-B27:05	SRAHVLFEV	0.9998	0.9513	0.1824	11.84	0.2085	12.42	1/982	1/7748
SNV	Breast	RAD54B_S104L_2	HLA-A02:01	HLAPKEVAV	0.9967	0.8183	0.4602	3.34	0.0725	9.63	1/982	1/7748
SNV	Breast	RAD54B_S104L_10	HLA-A02:01	TLDPPHTVHL	0.987	0.7897	0.6755	44.84	0.2912	9.63	1/982	1/7748
SNV	Breast	SEC24D_N491S_4	HLA-B15:01	ITYSKVLHF	0.997	0.6755	0.0781	12.29	0.1091	49	1/982	1/7748
SNV	Breast	SEC24D_N491S_9	HLA-B27:05	IRVGFITYSK	0.9999	0.8557	0.8842	22.8	0.2588	49	1/982	1/7748
SNV	Breast	ZNF445_R62H_8	HLA-B15:01	RQLFRQLHY	0.997	0.7502	0.049	11.04	0.1028	11.71	1/982	1/7748
SNV	Breast	ZNF609_P261S_8	HLA-C02:02	VSTPAVLSI	0.6637	0.9704	0.2175	306	0.3472	18.45	1/982	1/7748
SNV	Breast	ACAD9_E592G_5	HLA-A24:02	KYAPGNLDEQI	0.9994	0.5741	0.4121	225.58	0.5661	66.22	1/982	1/7748
SNV	Breast	ACSL3_K15E_6	HLA-B57:01	STMKLEHTI	0.9979	0.8749	0.3605	60.59	0.2467	211.33	1/982	1/7748
SNV	Breast	ACTL8_L81I_9	HLA-B52:01	LNWEGVQYI	0.7251	0.7943	0.7026	406.87	0.0531	2.82	1/982	1/7748
SNV	Breast	ANAPC1_P1895S_4	HLA-C12:02	HSVSAPQHL	0.7355	0.975	0.0269	391.04	0.4183	13.18	1/982	1/7748
SNV	Breast	ANKRD26_T1163I_1	HLA-B57:01	IVINIQDQF	0.93	0.8516	0.5305	97.19	0.2807	2.08	1/982	1/7748
SNV	Breast	ANKRD26_T1163I_1	HLA-C12:02	IVINIQDQF	0.9343	0.9705	0.6022	233.7	0.3133	2.08	1/982	1/7748
SNV	Breast	AP1G2_R458C_6	HLA-C12:02	HAYSVCRLY	0.5528	0.9168	0.1256	216.24	0.2975	21.25	1/982	1/7748
SNV	Breast	ARMC9_K60N_3	HLA-C12:02	IQNDLVAAF	0.9757	0.9774	0.3234	16.47	0.046	6.21	1/982	1/7748
SNV	Breast	ATF7IP_R886M_6	HLA-C12:02	IVQATMTSL	0.985	0.9206	0.3694	208.43	0.2898	31.57	1/982	1/7748
SNV	Breast	ATL1_G197D_3	HLA-A24:02	EYDRLAMEETF	0.9988	0.5742	0.663	424.58	0.6684	2.58	1/982	1/7748
SNV	Breast	ATL1_G197D_5	HLA-C12:02	FTEYDRLAM	0.9097	0.9524	0.6022	405.97	0.4261	2.58	1/982	1/7748
SNV	Breast	AZIN1_A124V_3	HLA-C12:02	YAVKVGVNI	0.9813	0.9245	0.0973	58.35	0.121	313.1	1/982	1/7748
SNV	Breast	BBS4_A421V_2	HLA-C12:02	MVQKLGAAL	0.993	0.9555	0.1459	109.55	0.1918	16.24	1/982	1/7748
SNV	Breast	BIRC6_I127T_8	HLA-B57:01	ISAVDKVTF	0.9983	0.778	0.207	11.75	0.1175	38.35	1/982	1/7748
SNV	Breast	BIRC6_I127T_7	HLA-C12:02	SAVDKVTFV	0.9468	0.9316	0.0419	57.18	0.1196	38.35	1/982	1/7748
SNV	Breast	BPIFB1_G210A_1	HLA-C12:02	AMYADLLQL	0.9944	0.9797	0.7292	327.11	0.3815	1.36	1/982	1/7748
SNV	Breast	BTN2A2_V253M_7	HLA-C12:02	SASPWMMAL	0.9952	0.9517	0.0006	8.34	0.0253	5.48	1/982	1/7748
SNV	Breast	BTN3A1_L34F_2	HLA-A24:02	VFGPSGPIL	0.9591	0.8419	0.2969	14.42	0.2464	13.91	1/982	1/7748
SNV	Breast	CD36_R386Q_4	HLA-C12:02	FAKQLQVNL	0.9981	0.9797	0.0922	104.6	0.1866	6.01	1/982	1/7748
SNV	Breast	CDC73_A451V_6	HLA-A24:02	FVQGPVWQF	0.97	0.8795	0.331	52.2	0.3707	64.72	1/982	1/7748
SNV	Breast	CDC73_A451V_1	HLA-A24:02	VWQFKGWPW	0.9866	0.8038	0.1218	187.08	0.5401	64.72	1/982	1/7748
SNV	Breast	CDC73_A451V_7	HLA-A24:02	VFVQGPVWQF	0.9979	0.9049	0.1288	2.29	0.0732	64.72	1/982	1/7748
SNV	Breast	CDC73_A451V_8	HLA-B57:01	AVFVQGPVW	0.9894	0.9914	0.0333	1.78	0.0205	64.72	1/982	1/7748
SNV	Breast	CDC73_A451V_9	HLA-B57:01	VAVFVQGPVW	0.9997	0.9828	0.1224	34.27	0.2028	64.72	1/982	1/7748
SNV	Breast	CDC73_A451V_6	HLA-C12:02	FVQGPVWQF	0.9109	0.9747	0.0264	182.42	0.2622	64.72	1/982	1/7748
SNV	Breast	CEP192_S1795Y_1	HLA-C12:02	YTTQHLRLL	0.7019	0.9225	0.0545	439.17	0.4425	15.41	1/982	1/7748
SNV	Breast	CHD9_R1412W_9	HLA-B57:01	ASFVASGNW	0.9985	0.9965	0.0201	2.06	0.0257	14.11	1/982	1/7748
SNV	Breast	CHD9_R1412W_10	HLA-B57:01	KASFVASGNW	0.9997	0.9975	0.068	11.3	0.1151	14.11	1/982	1/7748
SNV	Breast	CHST1_D367N_5	HLA-C12:02	RLSYNIVAF	0.6516	0.9722	1.3801	264.36	0.3383	76.88	1/982	1/7748
SNV	Breast	CLEC16A_F178L_2	HLA-C12:02	KLFNHPESM	0.8058	0.99	0.1623	34.27	0.0884	9.57	1/982	1/7748
SNV	Breast	COL5A1_R231W_6	HLA-C12:02	FVSDHWAAY	0.8313	0.9733	0.0015	4.8	0.0122	74.43	1/982	1/7748
SNV	Breast	COPG1_P636H_6	HLA-B57:01	KSSPEHVAL	0.9904	0.9876	0.3936	33.13	0.2002	467.36	1/982	1/7748
SNV	Breast	COPG1_P636H_6	HLA-C12:02	KSSPEHVAL	0.9962	0.9592	0.1325	262.95	0.3372	467.36	1/982	1/7748
SNV	Breast	CPN2_G70D_4	HLA-B57:01	RAFDSNPNL	0.9792	0.9849	0.4233	43.48	0.2211	1.07	1/982	1/7748
SNV	Breast	CPN2_G70D_4	HLA-C12:02	RAFDSNPNL	0.9062	0.9452	0.0664	21.99	0.0589	1.07	1/982	1/7748
SNV	Breast	CSF2RB_P756T_2	HLA-B57:01	ATGPVKSGF	0.9744	0.9854	0.3605	20.06	0.1559	5.27	1/982	1/7748
SNV	Breast	DDX42_G593S_3	HLA-B57:01	RASEKGVAY	0.9202	0.9474	0.8911	91.78	0.2766	69.44	1/982	1/7748
SNV	Breast	DET1_S360P_5	HLA-B57:01	VTDPPQASF	0.979	0.9769	0.0981	21.51	0.1635	7.4	1/982	1/7748
SNV	Breast	DET1_S360P_6	HLA-B57:01	RVTDPPQASF	0.9994	0.9915	0.3802	26.71	0.1836	7.4	1/982	1/7748
SNV	Breast	DET1_S360P_5	HLA-C12:02	VTDPPQASF	0.7565	0.9372	0.1289	67.23	0.1353	7.4	1/982	1/7748
SNV	Breast	DLAT_A519T_7	HLA-C12:02	VAVSTPTGL	0.9691	0.9654	0.0474	117.5	0.1997	42.73	1/982	1/7748
SNV	Breast	DNAJC3_R156H_3	HLA-C12:02	MQHLRSQAL	0.9648	0.9715	0.8909	407.47	0.4269	163.83	1/982	1/7748
SNV	Breast	ERCC6L2_A672V_5	HLA-B57:01	GSENVKRYF	0.8356	0.8816	0.9089	181.61	0.3516	7.71	1/982	1/7748
SNV	Breast	EXTL3_Q783H_7	HLA-A24:02	AWDIPHHSW	0.9937	0.7258	0.2319	6.44	0.1719	11.07	1/982	1/7748
SNV	Breast	EXTL3_Q783H_8	HLA-B57:01	HAWDIPHHSW	1	0.9844	0.0291	1.61	0.0163	11.07	1/982	1/7748
SNV	Breast	FBXO18_A495T_2	HLA-B57:01	ITKQAERVF	0.9976	0.8794	0.2407	3.66	0.0458	25.75	1/982	1/7748
SNV	Breast	FKBP15_T71A_5	HLA-C12:02	ATMSAPTIL	0.9265	0.9708	0.2116	117.86	0.2	19.83	1/982	1/7748
SNV	Breast	FLAD1_R530C_6	HLA-A24:02	IWDFLCQLF	0.9926	0.6286	0.1235	40.61	0.3439	84.94	1/982	1/7748
SNV	Breast	FNDC1_V767I_5	HLA-C12:02	MSSSISSHL	0.9974	0.976	0.0264	210.7	0.2921	8.79	1/982	1/7748
SNV	Breast	FYCO1_T1387A_7	HLA-B57:01	VAEAGLAISW	0.9982	0.9755	0.0892	25.95	0.1814	15.55	1/982	1/7748
SNV	Breast	FYCO1_T1387A_8	HLA-C12:02	TVAEAGLAI	0.7569	0.9853	0.4696	82.71	0.1602	15.55	1/982	1/7748
SNV	Breast	GORAB_A11T_6	HLA-A24:02	VLAVATARF	0.9737	0.5095	0.7001	65	0.3942	12.01	1/982	1/7748
SNV	Breast	GORAB_A11T_1	HLA-B57:01	TARFGHFW	0.9995	0.9902	0.387	125.79	0.2991	12.01	1/982	1/7748
SNV	Breast	GORAB_A11T_2	HLA-B57:01	ATARFGHFW	0.9992	0.9869	0.0006	1.26	0.0063	12.01	1/982	1/7748
SNV	Breast	GORAB_A11T_3	HLA-B57:01	VATARFGHFW	0.9998	0.9772	0.0388	17.67	0.1449	12.01	1/982	1/7748
SNV	Breast	HEATR5B_A133T_8	HLA-C12:02	MGRMLGSTF	0.8922	0.9857	1.9408	350.11	0.3953	39.26	1/982	1/7748
SNV	Breast	HIF1A_R29W_9	HLA-B57:01	KSRDAARSW	0.9994	0.9473	0.0194	1.08	0.002	105.3	1/982	1/7748
SNV	Breast	HIF1A_R29W_10	HLA-B57:01	EKSRDAARSW	0.9954	0.8291	1.4835	7.1	0.0849	105.3	1/982	1/7748
SNV	Breast	HIF1A_R29W_11	HLA-B57:01	KEKSRDAARSW	0.9998	0.9066	1.03	3.33	0.0408	105.3	1/982	1/7748
SNV	Breast	HPS4_P122H_6	HLA-C06:02	NFYNGHVSL	0.7838	0.9959	0.5014	451.44	0.1971	8.09	1/982	1/7748
SNV	Breast	IBTK_V289I_1	HLA-B57:01	IAAGRFHTVLW	1	0.9546	0.16	294.96	0.4202	69.87	1/982	1/7748
SNV	Breast	IBTK_V289I_1	HLA-C12:02	IAAGRFHTV	0.8705	0.9798	0.0269	67.06	0.135	69.87	1/982	1/7748
SNV	Breast	IGF1R_R1044M_6	HLA-B57:01	ASMREMIEF	0.9988	0.9651	0.1224	31.97	0.1974	106.33	1/982	1/7748
SNV	Breast	KALRN_R1400W_9	HLA-B57:01	TFFDEIQQW	0.9842	0.9965	0.1993	217.9	0.3782	1.21	1/982	1/7748
SNV	Breast	KALRN_R1400W_10	HLA-B57:01	GTFFDEIQQW	0.9999	0.9969	0.0503	2.75	0.0336	1.21	1/982	1/7748
SNV	Breast	KDM5C_A663V_2	HLA-C12:02	LVAAVHKEM	0.9906	0.9886	0.3114	205.75	0.2872	60	1/982	1/7748
SNV	Breast	KIF1C_E143D_6	HLA-B57:01	LSYSVDVSY	0.9719	0.7288	0.3247	41.22	0.217	109.34	1/982	1/7748
SNV	Breast	KIF1C_E143D_6	HLA-C12:02	LSYSVDVSY	0.8378	0.9451	0.2515	36.77	0.0921	109.34	1/982	1/7748
SNV	Breast	KIF3C_M107I_5	HLA-B57:01	KTYTIQGTW	0.9997	0.9955	0.0001	1.09	0.0023	8.2	1/982	1/7748
SNV	Breast	KLHL2_T116I_4	HLA-C12:02	YVYIAEIQV	0.594	0.943	1.2018	323.28	0.3791	10.41	1/982	1/7748
SNV	Breast	KMT2D_R3547H_1	HLA-B57:01	HTAKKAGREF	0.9981	0.9662	0.5596	257.11	0.4021	24.32	1/982	1/7748
SNV	Breast	KPNA3_I449M_9	HLA-C12:02	MAGDEASTM	0.9796	0.9666	0.0426	170.39	0.2488	77.66	1/982	1/7748
SNV	Breast	LIG3_L415S_2	HLA-B57:01	RSIKHDLKM	0.9986	0.9787	0.1509	8.53	0.0976	23.4	1/982	1/7748
SNV	Breast	LPGAT1_R275M_3	HLA-A24:02	GYMKPTVTHV	0.9661	0.5051	0.8303	437.17	0.6735	45.19	1/982	1/7748
SNV	Breast	LPGAT1_R275M_2	HLA-C12:02	YMKPTVTHV	0.9923	0.9488	0.1289	40.88	0.0977	45.19	1/982	1/7748
SNV	Breast	MADD_F861L_8	HLA-C06:02	YRNHSTSL	0.9025	0.987	0.4221	107.86	0.0994	39.81	1/982	1/7748
SNV	Breast	MADD_F861L_8	HLA-C06:02	YRNHSTSLSL	0.9729	0.9859	0.1563	99.05	0.0966	39.81	1/982	1/7748
SNV	Breast	MAMLD1_L399M_9	HLA-C12:02	MTSSSNAAM	0.95	0.9832	0.013	120.35	0.2028	1.32	1/982	1/7748
SNV	Breast	MAMLD1_L399M_3	HLA-C12:02	AAMGPAMPY	0.7862	0.9805	0.0444	23.99	0.0669	1.32	1/982	1/7748
SNV	Breast	MAPK7_Y239H_1	HLA-B57:01	HTQAIDLW	0.9993	0.9676	0.5986	32.23	0.1981	11.7	1/982	1/7748
SNV	Breast	MAPK7_Y239H_5	HLA-C12:02	SLHEHTQAI	0.9598	0.9771	0.1426	125.15	0.2079	11.7	1/982	1/7748
SNV	Breast	MATK_R24Q_4	HLA-A24:02	ELPQVSPRF	0.9784	0.7253	0.8031	51.32	0.3689	11.56	1/982	1/7748
SNV	Breast	MATK_R24Q_1	HLA-B57:01	QVSPRFLRAW	0.9996	0.9857	0.2291	278.41	0.4126	11.56	1/982	1/7748
SNV	Breast	MCOLN2_F494Y_9	HLA-C12:02	YLYSFISLY	0.7274	0.9304	0.4038	37.24	0.0928	4.43	1/982	1/7748
SNV	Breast	MCOLN2_F494Y_7	HLA-C12:02	YSFISLYIY	0.6286	0.9404	0.6339	355.95	0.3987	4.43	1/982	1/7748
SNV	Breast	MECP2_R133H_4	HLA-B57:01	KAFHSKVEL	0.9945	0.9681	0.3802	264.12	0.4056	7.83	1/982	1/7748
SNV	Breast	MECP2_R133H_4	HLA-C12:02	KAFHSKVEL	0.9854	0.973	0.036	144.29	0.2268	7.83	1/982	1/7748
SNV	Breast	MED14_R281M_9	HLA-C12:02	FIHQLVQSM	0.9989	0.9822	0.0116	17.14	0.0474	36.37	1/982	1/7748
SNV	Breast	MGAT2_W242L_3	HLA-C12:02	FVLERVKIL	0.8554	0.9646	0.3114	91.4	0.1715	2.85	1/982	1/7748
SNV	Breast	MGST2_R90C_5	HLA-C12:02	YIYGCHLYF	0.9506	0.9661	0.1703	495.98	0.4679	81.77	1/982	1/7748
SNV	Breast	NAA25_S698N_4	HLA-C12:02	RLINGLPSL	0.9261	0.9868	0.8521	73.18	0.1461	26.62	1/982	1/7748
SNV	Breast	NCOR1_P1909S_3	HLA-B57:01	KGSPPKSRY	0.9666	0.9179	1.099	317.47	0.4299	41.68	1/982	1/7748
SNV	Breast	NIPAL1_A130V_2	HLA-C12:02	AVNFAAYAF	0.6153	0.9791	1.0264	349.04	0.3947	4.3	1/982	1/7748
SNV	Breast	OGFOD1_R230C_3	HLA-B57:01	KSCLSISGW	0.9993	0.866	0.0107	9.45	0.104	27.04	1/982	1/7748
SNV	Breast	PCDHGA6_G46A_3	HLA-C12:02	FVANIVKDL	0.9941	0.969	0.3299	128.57	0.2115	2.27	1/982	1/7748
SNV	Breast	PCSK7_R560H_7	HLA-C12:02	SLIGAPHSM	0.9926	0.955	0.1106	20.06	0.0542	2.22	1/982	1/7748
SNV	Breast	PDSS2_A149V_4	HLA-B57:01	RSLVEITEL	0.9956	0.9946	0.505	237.13	0.3905	21.66	1/982	1/7748
SNV	Breast	PHF19_V72M_1	HLA-B57:01	MTFEDNSKY	0.876	0.8326	0.2213	36.87	0.2084	2.55	1/982	1/7748
SNV	Breast	PHF19_V72M_1	HLA-B57:01	MTFEDNSKYW	0.9999	0.8565	0.0305	2.09	0.026	2.55	1/982	1/7748
SNV	Breast	PHF19_V72M_1	HLA-C12:02	MTFEDNSKY	0.5494	0.9725	0.0444	24.26	0.0681	2.55	1/982	1/7748
SNV	Breast	PIK3CA_E545K_3	HLA-B57:01	ITKQEKDFLW	1	0.9568	0.0602	3.56	0.0443	13.46	4/982	14/7748
SNV	Breast	PIK3R4_R417H_5	HLA-C12:02	ILLDHITPY	0.7883	0.9767	0.1521	58.42	0.121	33.29	1/982	1/7748
SNV	Breast	PIK3R4_R417H_1	HLA-C12:02	HITPYLLHF	0.8375	0.9375	0.2154	238.37	0.3173	33.29	1/982	1/7748
SNV	Breast	PINK1_K260R_1	HLA-B57:01	RSKRGPKQL	0.8915	0.9065	0.9668	306.95	0.4254	9.43	1/982	1/7748
SNV	Breast	PLRG1_P183H_1	HLA-B57:01	HTMPKPQW	0.9997	0.9951	0.4018	2.6	0.0316	36.4	1/982	1/7748
SNV	Breast	PLRG1_P183H_3	HLA-B57:01	KAHTMPKPQW	0.9997	0.978	0.0927	2.58	0.0313	36.4	1/982	1/7748
SNV	Breast	PLRG1_P183H_7	HLA-C12:02	LMAKKAHTM	0.956	0.9784	0.3759	312.81	0.3725	36.4	1/982	1/7748
SNV	Breast	POLR1A_A267T_8	HLA-B57:01	SAREHLSTLW	0.9999	0.9803	0.0808	4.45	0.0587	29.53	1/982	1/7748
SNV	Breast	POLR1A_A267T_8	HLA-C12:02	SAREHLSTL	0.998	0.9372	0.0101	20.23	0.0546	29.53	1/982	1/7748
SNV	Breast	PPM1D_H119R_7	HLA-B57:01	AQFARERLW	0.9751	0.9939	0.5463	35.98	0.2065	15.29	1/982	1/7748
SNV	Breast	PPM1D_H119R_8	HLA-B57:01	AAQFARERLW	0.9998	0.9925	0.2171	10.94	0.1131	15.29	1/982	1/7748
SNV	Breast	PPM1D_H119R_5	HLA-C12:02	FARERLWGF	0.9854	0.9671	0.1164	163.63	0.2434	15.29	1/982	1/7748
SNV	Breast	PRKAR2B_T239A_2	HLA-B57:01	AASPGALW	0.9995	0.992	0.452	17.84	0.1456	11.26	1/982	1/7748
SNV	Breast	PRKAR2B_T239A_3	HLA-B57:01	TAASPGALW	0.9975	0.9888	0.0354	1.86	0.0222	11.26	1/982	1/7748
SNV	Breast	PRKAR2B_T239A_4	HLA-B57:01	ITAASPGALW	0.9999	0.9898	0.0309	2.47	0.0298	11.26	1/982	1/7748
SNV	Breast	PRKAR2B_T239A_5	HLA-B57:01	TITAASPGALW	0.9996	0.9833	0.2241	220.81	0.3801	11.26	1/982	1/7748
SNV	Breast	PRKAR2B_T239A_4	HLA-C12:02	ITAASPGAL	0.9579	0.9746	0.1356	352.22	0.3965	11.26	1/982	1/7748
SNV	Breast	PRTG_R743G_6	HLA-A24:02	IFLHWGRPAF	0.9889	0.5061	0.2379	198.45	0.5483	1.34	1/982	1/7748
SNV	Breast	PRTG_R743G_5	HLA-C12:02	FLHWGRPAF	0.9841	0.9823	0.0993	79.97	0.1565	1.34	1/982	1/7748
SNV	Breast	PTN_F17L_6	HLA-A24:02	KFAAALLAF	0.9936	0.6535	0.0343	3.49	0.1113	4.12	1/982	1/7748
SNV	Breast	PTPN23_R537W_9	HLA-B57:01	LSGPLDQVW	0.999	0.9957	0.0474	2.64	0.0321	37.58	1/982	1/7748
SNV	Breast	PTPN23_R537W_10	HLA-B57:01	LLSGPLDQVW	0.9966	0.996	0.1948	222.6	0.3813	37.58	1/982	1/7748
SNV	Breast	PTPN23_R537W_11	HLA-B57:01	RLLSGPLDQVW	0.9997	0.9937	0.0927	91.36	0.2763	37.58	1/982	1/7748
SNV	Breast	PTPN23_R537W_1	HLA-C12:02	WAALPTPAL	0.9964	0.9918	0.0621	57.19	0.1196	37.58	1/982	1/7748
SNV	Breast	PTPN9_Y238C_1	HLA-B57:01	CVKIDLATW	0.9932	0.988	0.1056	74.81	0.262	24.7	1/982	1/7748
SNV	Breast	PTPN9_Y238C_2	HLA-B57:01	GCVKIDLATW	0.9995	0.9863	0.2596	394.95	0.4586	24.7	1/982	1/7748
SNV	Breast	PTPRF_R823Q_6	HLA-C12:02	GAVPGQPTM	0.9677	0.973	0.0973	38.65	0.0947	380.17	1/982	1/7748
SNV	Breast	PXDN_V1288M_8	HLA-B57:01	ITRVQSDMF	0.994	0.8717	0.4018	82.46	0.269	41.67	1/982	1/7748
SNV	Breast	RAD51B_I251V_5	HLA-B52:01	EEFSVPVI	0.9063	0.8609	0.1903	427.16	0.055	1.44	1/982	1/7748
SNV	Breast	RALA_N81S_1	HLA-A24:02	SYFRSGEGF	0.9764	0.5065	0.0343	1.58	0.0322	78.1	1/982	1/7748
SNV	Breast	RALA_N81S_1	HLA-A24:02	SYFRSGEGFL	0.926	0.7515	0.2621	413.33	0.6637	78.1	1/982	1/7748
SNV	Breast	RALA_N81S_7	HLA-C12:02	YAAIRDSYF	0.9827	0.9449	0.1325	21.32	0.0573	78.1	1/982	1/7748
SNV	Breast	RBMS3_P242S_8	HLA-A24:02	KYTQNGRSW	0.9563	0.7226	0.4507	66.73	0.397	1.62	1/982	1/7748
SNV	Breast	RBMS3_P242S_7	HLA-B57:01	YTQNGRSW	0.9994	0.9805	0.5305	27.71	0.1864	1.62	1/982	1/7748
SNV	Breast	RBMS3_P242S_10	HLA-B57:01	QSKYTQNGRSW	0.9999	0.9806	0.2507	133.71	0.307	1.62	1/982	1/7748
SNV	Breast	RNF214_P533H_5	HLA-B57:01	ASIPHPPGL	0.9295	0.953	0.9855	146.67	0.3205	7.22	1/982	1/7748
SNV	Breast	RNF214_P533H_5	HLA-C12:02	ASIPHPPGL	0.9624	0.9689	0.0379	68.29	0.1373	7.22	1/982	1/7748
SNV	Breast	ROCK1_V170A_4	HLA-A24:02	NYDAPEKWARF	0.9995	0.7517	0.439	31.77	0.3176	19.4	1/982	1/7748
SNV	Breast	ROCK1_V170A_5	HLA-B57:01	SNYDAPEKW	0.9983	0.9493	0.1476	64.88	0.2519	19.4	1/982	1/7748
SNV	Breast	ROCK1_V170A_6	HLA-B57:01	MSNYDAPEKW	0.9999	0.9561	0.0619	1.95	0.0241	19.4	1/982	1/7748
SNV	Breast	RTP4_W8C_8	HLA-A24:02	DFWTCEQTF	0.9807	0.5836	0.2319	486.66	0.6924	3.19	1/982	1/7748
SNV	Breast	RUVBL2_A212T_6	HLA-B57:01	RSFTRTRDY	0.9868	0.873	0.772	12.88	0.1232	206.65	1/982	1/7748
SNV	Breast	S1PR3_V110I_7	HLA-B57:01	FSLSPTIW	0.9991	0.947	0.4914	326.98	0.4338	11.64	1/982	1/7748
SNV	Breast	S1PR3_V110I_9	HLA-B57:01	KTFSLSPTI	0.9971	0.8698	0.0951	7.92	0.093	11.64	1/982	1/7748
SNV	Breast	S1PR3_V110I_9	HLA-B57:01	KTFSLSPTIW	0.9999	0.9361	0.0221	1.51	0.013	11.64	1/982	1/7748
SNV	Breast	SARS2_V477M_2	HLA-C12:02	LMPPALQSY	0.9707	0.9791	0.1963	206.09	0.2875	11.15	1/982	1/7748
SNV	Breast	SCD5_V89M_1	HLA-B57:01	MTAGAHRLW	0.9997	0.9958	0.0045	1.13	0.0033	10.4	1/982	1/7748
SNV	Breast	SCD5_V89M_2	HLA-B57:01	GMTAGAHRLW	0.9986	0.9853	0.387	3.61	0.0451	10.4	1/982	1/7748
SNV	Breast	SCD5_V89M_3	HLA-B57:01	LGMTAGAHRLW	1	0.9901	0.0789	250.2	0.3983	10.4	1/982	1/7748
SNV	Breast	SCML2_V28I_2	HLA-B57:01	SIQRDDFHW	0.9964	0.9331	0.1091	46.42	0.2262	11.52	1/982	1/7748
SNV	Breast	SCML2_V28I_3	HLA-B57:01	SSIQRDDFHW	0.9998	0.9375	0.0566	8.59	0.0981	11.52	1/982	1/7748
SNV	Breast	SCN1B_A197V_6	HLA-C12:02	AAQENVSEY	0.9225	0.9441	0.0184	62.38	0.1258	1.25	1/982	1/7748
SNV	Breast	SEC24A_T471I_7	HLA-C12:02	FLYNPLIRV	0.6906	0.9789	1.4684	170.31	0.2487	42.63	1/982	1/7748
SNV	Breast	SERINC1_R92H_3	HLA-A24:02	VYHLCFGLAMF	0.9953	0.7476	0.5855	230.96	0.5694	353.67	1/982	2/7748
SNV	Breast	SETD5_T979I_3	HLA-C06:02	FRIEFNLM	0.9816	0.995	0.494	422.2	0.1905	76.46	1/982	1/7748
SNV	Breast	SIPA1L2_P632S_1	HLA-C12:02	SAFEEFLDL	0.922	0.9841	0.0483	230.99	0.3109	9.32	1/982	1/7748
SNV	Breast	SLC16A2_P215L_5	HLA-B52:01	FAFQLSLVI	0.9684	0.99	0.0092	450.19	0.0569	2.58	1/982	1/7748
SNV	Breast	SLC16A2_P215L_5	HLA-C12:02	FAFQLSLVI	0.9156	0.9852	0.0459	105.05	0.1871	2.58	1/982	1/7748
SNV	Breast	SLC30A5_M735V_6	HLA-A24:02	AYFQHVSGL	0.9931	0.781	0.056	11.26	0.2261	57.35	1/982	1/7748
SNV	Breast	SLC30A5_M735V_2	HLA-C12:02	HVSGLSTGF	0.7677	0.9693	0.3359	99.9	0.1814	57.35	1/982	1/7748
SNV	Breast	SMC5_K618N_6	HLA-C12:02	YTAEENYVV	0.5362	0.9666	0.5871	316.42	0.3748	31.37	1/982	1/7748
SNV	Breast	SNX25_D724N_5	HLA-B57:01	KQIRNTVSW	0.9491	0.9797	0.1993	7.78	0.0919	126.43	1/982	1/7748
SNV	Breast	SON_A166T_2	HLA-B57:01	VTLELPTRAF	0.9996	0.9934	0.2546	260.06	0.4036	115.39	1/982	1/7748
SNV	Breast	SPEN_P1977S_5	HLA-B57:01	ETLKSPEGW	0.9655	0.9797	0.1476	12.25	0.1201	44.93	1/982	1/7748
SNV	Breast	SPEN_P1977S_6	HLA-B57:01	AETLKSPEGW	0.9965	0.9858	1.8398	13.07	0.1241	44.93	1/982	1/7748
SNV	Breast	SPG21_W82R_6	HLA-A24:02	QYPVYRDHLEF	0.9993	0.5646	0.4199	41.89	0.3472	131.5	1/982	1/7748
SNV	Breast	SPTBN4_R1333W_9	HLA-B57:01	MLMARDGTW	0.9812	0.9935	0.1909	197.41	0.3638	2.63	1/982	1/7748
SNV	Breast	SRR_R74W_9	HLA-B57:01	SLVPDALEW	0.7844	0.9938	0.103	23.45	0.173	8.86	1/982	1/7748
SNV	Breast	SRR_R74W_10	HLA-B57:01	RSLVPDALEW	0.9998	0.9951	0.0343	1.49	0.0123	8.86	1/982	1/7748
SNV	Breast	STRIP1_M265I_1	HLA-C12:02	ILFGMVTKF	0.8405	0.9815	0.3515	282.36	0.3517	13.41	1/982	1/7748
SNV	Breast	TANC2_Q993H_7	HLA-B57:01	KSHAIQHAL	0.9969	0.9729	0.1172	11.02	0.1135	3.52	1/982	1/7748
SNV	Breast	TANC2_Q993H_7	HLA-C12:02	KSHAIQHAL	0.9818	0.937	0.0306	317.05	0.3752	3.52	1/982	1/7748
SNV	Breast	TANC2_Q993H_1	HLA-C12:02	HALIAAASM	0.9668	0.9671	0.1256	129.19	0.2122	3.52	1/982	1/7748
SNV	Breast	THBS1_R1077W_9	HLA-B57:01	TTGPGEHLW	0.9987	0.9981	0.0235	1.69	0.0184	289.79	1/982	1/7748
SNV	Breast	THBS1_R1077W_10	HLA-B57:01	STTGPGEHLW	0.9999	0.9971	0.0485	2.32	0.0283	289.79	1/982	1/7748
SNV	Breast	TJAP1_P239S_6	HLA-C12:02	RVLEKSESL	0.7341	0.9555	0.7449	151.86	0.2336	10.16	1/982	1/7748
SNV	Breast	TMEM181_A517V_6	HLA-C12:02	YLRFGVQVL	0.9907	0.9862	0.6022	85.64	0.1641	88.67	1/982	1/7748
SNV	Breast	TNN_V903I_8	HLA-B57:01	VTENMATISW	0.9986	0.9616	0.1119	22.3	0.1674	1.18	1/982	1/7748
SNV	Breast	TTC21B_R339I_1	HLA-B57:01	IVKEALKW	0.9997	0.9764	0.4446	37.18	0.2091	22.22	1/982	1/7748
SNV	Breast	TTC21B_R339I_2	HLA-B57:01	GIVKEALKW	0.9881	0.9895	0.1826	14.49	0.1311	22.22	1/982	1/7748
SNV	Breast	WDR54_R329W_9	HLA-B57:01	TGYDLAEIW	0.9947	0.9724	0.1948	28.5	0.1886	14.96	1/982	1/7748
SNV	Breast	WDR54_R329W_10	HLA-B57:01	VTGYDLAEIW	0.9993	0.962	0.1476	17.73	0.1451	14.96	1/982	1/7748
SNV	Breast	ZBTB10_R387H_7	HLA-A24:02	ILVAGSHFF	0.941	0.5132	0.2527	52.38	0.3711	21.77	1/982	1/7748
SNV	Breast	ZC3H12A_A571T_9	HLA-A24:02	VFPPHLVETV	0.9736	0.6957	0.6244	353.71	0.6363	37.39	1/982	1/7748
SNV	Breast	ZC3H12A_A571T_1	HLA-C12:02	TVMGRFPQL	0.9648	0.9749	0.494	166.27	0.2455	37.39	1/982	1/7748
SNV	Breast	ZFC3H1_A1874T_1	HLA-B57:01	TLRLLQHEW	0.9956	0.9929	0.1948	60.67	0.2468	13.9	1/982	1/7748
SNV	Breast	ZFC3H1_A1874T_2	HLA-B57:01	LTLRLLQHEW	0.9999	0.9909	0.055	109.54	0.2892	13.9	1/982	1/7748
SNV	Breast	ZHX2_R674C_8	HLA-B57:01	LVRTEIVCW	0.9991	0.9878	0.12	101.69	0.2839	35.64	1/982	1/7748
SNV	Breast	ZNF185_A550V_1	HLA-B57:01	VTSEQPHIY	0.9748	0.94	0.4079	116.41	0.2935	21.21	1/982	1/7748
SNV	Breast	ZNF268_A775T_4	HLA-B57:01	RTHTGEKPY	0.9557	0.9867	0.6925	153.55	0.3272	13.42	1/982	1/7748
SNV	Breast	ZNF446_C52R_7	HLA-B57:01	RLRELCRQW	0.9932	0.9844	0.1091	119.68	0.2955	10.98	1/982	1/7748
SNV	Breast	ZNF638_L1751W_9	HLA-B57:01	SSDLHLVTW	0.9976	0.993	0.0235	5.8	0.0711	57.08	1/982	1/7748
SNV	Breast	ZNF791_K503N_1	HLA-C12:02	NAFIYPTSF	0.9178	0.9771	0.1024	14.72	0.0421	16.31	1/982	1/7748
SNV	Breast	ZNF84_I307T_5	HLA-B57:01	KSHLTSHW	0.9999	0.9957	0.2507	12.49	0.1213	16.74	1/982	1/7748
SNV	Breast	ZSWIM8_R1120H_3	HLA-B57:01	GSHGGYNGRGW	0.9999	0.9416	0.2241	146.93	0.3207	23.29	1/982	1/7748
SNV	Breast	CYP26B1_S462R_1	HLA-B27:09	RRFELATRT	0.9957	0.7617	0.2715	63.5	0.3318	4.64	1/982	1/7748
SNV	Breast	CYP26B1_S462R_1	HLA-B27:09	RRFELATRTF	0.9996	0.6868	0.0569	1.21	0.021	4.64	1/982	1/7748
SNV	Breast	CYP26B1_S462R_1	HLA-B27:09	RRFELATRTFP	0.9996	0.5845	1.1101	414.49	0.5053	4.64	1/982	1/7748
SNV	Breast	CYP26B1_S462R_1	HLA-C06:02	RRFELATRTF	0.9602	0.9934	0.2294	89.68	0.0932	4.64	1/982	1/7748
SNV	Breast	FREM2_G888R_2	HLA-B27:09	GRLFHLEDI	0.9989	0.919	0.3469	16.63	0.2259	1.46	1/982	1/7748
SNV	Breast	ODF2_Q352R_8	HLA-B27:09	MRGHLQARL	0.9968	0.8056	0.1865	228.41	0.4439	22.57	1/982	1/7748
SNV	Breast	ABCA5_P1178Q_7	HLA-A32:01	IIIPIYQLL	0.8973	0.9615	0.305	100.4	0.1439	4	1/982	1/7748
SNV	Breast	ABCA5_P1178Q_7	HLA-C07:02	IIIPIYQLL	0.7291	0.966	1.9695	458.08	0.3845	4	1/982	1/7748
SNV	Breast	ABCA5_P1178Q_7	HLA-C02:02	IIIPIYQLL	0.5126	0.9514	0.3922	110.85	0.1718	4	1/982	1/7748
SNV	Breast	APPBP2_R497L_5	HLA-A32:01	KLYLLSIAI	0.9624	0.7485	0.039	56.35	0.1104	16.66	1/982	1/7748
SNV	Breast	CCDC69_R191H_5	HLA-C07:02	MKNEHIHEL	0.8784	0.9466	0.0969	67.41	0.1588	13.12	1/982	1/7748
SNV	Breast	CYP2A6_D364A_5	HLA-C07:02	QRFGAVIPM	0.9535	0.9581	0.0262	39.1	0.1146	1.97	1/982	1/7748
SNV	Breast	CYP2A6_D364A_3	HLA-C02:02	FGAVIPMSL	0.9219	0.9917	0.594	154.25	0.224	1.97	1/982	1/7748
SNV	Breast	FUT3_R131C_8	HLA-B07:02	SPRPQGQCWI	0.9769	0.5111	0.3274	180.84	0.3124	25.21	1/982	1/7748
SNV	Breast	IGF1R_G367W_2	HLA-C07:02	RWNNIASEL	0.5237	0.9809	0.5784	212.54	0.2771	869.15	1/982	1/7748
SNV	Breast	JTB_M101I_3	HLA-A32:01	ALIEQRLFW	0.9963	0.9227	0.0602	11.07	0.0419	416.66	1/982	1/7748
SNV	Breast	PTPDC1_V285M_6	HLA-A32:01	RLLKHMPKI	0.9898	0.9582	0.0665	62.52	0.1163	2.69	1/982	1/7748
SNV	Breast	PTPDC1_V285M_3	HLA-C07:02	KHMPKIIHL	0.9129	0.8849	0.0099	10.74	0.052	2.69	1/982	1/7748
SNV	Breast	RNF135_V327F_9	HLA-C07:02	TRNCSHWAF	0.8079	0.9408	0.1973	206.26	0.2735	17.63	1/982	1/7748
SNV	Breast	ABCC1_P464A_1	HLA-C15:02	ASVLAGVAV	0.9992	0.9483	0.2796	192.43	0.5129	37.68	1/982	1/7748
SNV	Breast	B4GALNT3_D402V_1	HLA-B27:05	VRFSFQEYI	0.9997	0.9624	0.2085	3.27	0.1046	6.11	1/982	1/7748
SNV	Breast	B4GALNT3_D402V_1	HLA-B27:05	VRFSFQEYIK	0.9998	0.9524	0.4551	174.76	0.4696	6.11	1/982	1/7748
SNV	Breast	BMP4_N135I_7	HLA-B35:01	IPGTSEISAF	0.9856	0.8865	0.2156	52.56	0.2486	1.45	1/982	1/7748
SNV	Breast	C17orf53_V117L_3	HLA-B27:05	RRLTVTEVL	0.9998	0.7985	0.1474	2.03	0.0639	8.51	1/982	1/7748
SNV	Breast	C17orf53_V117L_3	HLA-B27:05	RRLTVTEVLR	0.9998	0.5788	0.1003	18.44	0.2417	8.51	1/982	1/7748
SNV	Breast	ENTPD7_D258Y_8	HLA-B27:05	RRTVGILY	0.9998	0.9043	0.8842	227.55	0.4989	10.16	1/982	1/7748
SNV	Breast	ENTPD7_D258Y_9	HLA-B27:05	RRRTVGILY	0.9985	0.8595	0.1303	2.95	0.0931	10.16	1/982	1/7748
SNV	Breast	ENTPD7_D258Y_8	HLA-B27:05	RRTVGILYM	0.9999	0.8994	0.0809	1.36	0.0271	10.16	1/982	1/7748
SNV	Breast	ENTPD7_D258Y_10	HLA-B27:05	GRRRTVGILY	0.9997	0.9079	0.2085	66.7	0.364	10.16	1/982	1/7748
SNV	Breast	ENTPD7_D258Y_9	HLA-B27:05	RRRTVGILYM	0.9999	0.844	0.0855	21.88	0.2552	10.16	1/982	1/7748
SNV	Breast	ENTPD7_D258Y_1	HLA-C15:02	YMGGASLQI	0.8799	0.9377	1.2334	463.7	0.7524	10.16	1/982	1/7748
SNV	Breast	ENTPD7_D258Y_3	HLA-C01:02	ILYMGGASL	0.5892	0.9765	0.5761	228.5	0.0189	10.16	1/982	1/7748
SNV	Breast	FASTKD1_T723R_1	HLA-B35:01	RPYYHKVDF	0.8397	0.7267	0.5225	67.5	0.271	6.17	1/982	1/7748
SNV	Breast	FASTKD3_E114V_5	HLA-B35:01	TSSEVVLSF	0.9946	0.8947	0.0516	52.31	0.2482	16.41	1/982	1/7748
SNV	Breast	FASTKD3_E114V_5	HLA-C15:02	TSSEVVLSF	0.9725	0.9086	0.268	452.54	0.7456	16.41	1/982	1/7748
SNV	Breast	FASTKD3_E114V_1	HLA-C15:02	VVLSFISTM	0.9734	0.8099	0.6613	112	0.4143	16.41	1/982	1/7748
SNV	Breast	FUBP1_M634I_9	HLA-C15:02	YAQTSPQGI	0.9959	0.7775	0.268	181.03	0.4993	51.45	1/982	1/7748
SNV	Breast	FUT3_T237M_9	HLA-B35:01	LPKGTMMEM	0.9898	0.9121	0.1165	4.51	0.0844	1.11	1/982	1/7748
SNV	Breast	FUT3_T237M_5	HLA-B35:01	TMMEMLSRY	0.9745	0.8511	1.0011	473.01	0.482	1.11	1/982	1/7748
SNV	Breast	GZMA_S17P_8	HLA-C15:02	SSLSVVVPL	0.9992	0.8646	0.0808	408.67	0.7169	3.81	1/982	1/7748
SNV	Breast	GZMA_S17P_6	HLA-C15:02	LSVVVPLLL	0.9985	0.789	0.1609	93.48	0.3818	3.81	1/982	1/7748
SNV	Breast	GZMA_S17P_5	HLA-C15:02	SVVVPLLLI	0.9918	0.7308	0.6613	250.71	0.5722	3.81	1/982	1/7748
SNV	Breast	IGSF8_G416E_6	HLA-C15:02	YVRGSETRL	0.8541	0.8842	1.5789	213.23	0.5359	68.45	1/982	1/7748
SNV	Breast	OSCP1_E367Q_8	HLA-B27:05	ARIMGEFQI	0.9999	0.6142	0.1824	1.44	0.0309	2.93	1/982	1/7748
SNV	Breast	P3H2_G253V_1	HLA-B35:01	VPQRFEEYEY	0.9814	0.7387	0.4229	131.95	0.3358	26.39	1/982	1/7748
SNV	Breast	PTPRZ1_G1626V_4	HLA-B27:05	SRIVLAEGL	0.9995	0.8246	0.1914	1.49	0.0356	1.71	1/982	1/7748
SNV	Breast	PTPRZ1_G1626V_8	HLA-C15:02	SSHESRIVL	0.9993	0.8249	0.0808	29.7	0.1912	1.71	1/982	1/7748
SNV	Breast	RFC1_G724V_8	HLA-B35:01	LIMDEVDVM	0.9207	0.9357	1.3805	255.61	0.4044	15.98	1/982	1/7748
SNV	Breast	SCRN1_G20S_5	HLA-B35:01	RAKDSLVVF	0.8752	0.8508	0.1884	213.38	0.3851	16.55	1/982	1/7748
SNV	Breast	SCRN1_G20S_5	HLA-C15:02	RAKDSLVVF	0.9551	0.7536	0.5354	254.78	0.5758	16.55	1/982	1/7748
SNV	Breast	SEL1L3_Y926H_3	HLA-B27:05	RRHLGVNCV	0.9991	0.8997	0.4655	456.8	0.5895	26.09	1/982	1/7748
SNV	Breast	SEL1L3_Y926H_3	HLA-B27:05	RRHLGVNCVW	0.9996	0.7938	0.5181	336.28	0.5496	26.09	1/982	1/7748
SNV	Breast	SNRPA_K20N_8	HLA-C15:02	YINNLNENI	0.9926	0.8673	0.6704	226.6	0.5495	139.33	1/982	1/7748
SNV	Breast	TNFRSF19_D399V_2	HLA-C15:02	LVQESGAVI	0.9744	0.9756	0.7371	190.88	0.511	15.34	1/982	1/7748
SNV	Breast	TRERF1_P554T_3	HLA-B35:01	LPTQPQPPL	0.9836	0.9635	0.1356	49.48	0.2437	1.46	1/982	1/7748
SNV	Breast	TRIM23_V78L_9	HLA-B27:05	IRCPFDRQL	0.9967	0.5885	0.5088	125.81	0.433	2.91	1/982	1/7748
SNV	Breast	ZNF841_Q73H_4	HLA-B27:05	LRFHSGLGEL	0.9999	0.941	0.23	38.91	0.3066	6.52	1/982	1/7748
SNV	Breast	ADD3_R57Q_4	HLA-B27:05	QRKQVTQIL	0.9979	0.5178	0.4551	172.55	0.4681	35.84	1/982	1/7748
SNV	Breast	PCDHGA9_T406M_5	HLA-B27:05	YRLLMAQIL	0.9996	0.8364	0.3115	4.51	0.1341	1.46	1/982	1/7748
SNV	Breast	TIMELESS_D844Y_5	HLA-B41:01	VEGQYVVEA	0.6295	0.8453	0.225	24.09	0.128	13.06	1/982	1/7748
SNV	Breast	TMEM44_V384L_6	HLA-A02:05	LTIEPLQQA	0.708	0.5695	1.0424	419.83	0.4735	7.67	1/982	1/7748
SNV	Breast	TTC8_S266L_9	HLA-B41:01	REAEKQFKL	0.5744	0.8397	0.0683	21.99	0.1217	18.76	1/982	1/7748
SNV	Breast	TTC8_S266L_7	HLA-B41:01	AEKQFKLAL	0.6744	0.8057	0.0326	9.18	0.0717	18.76	1/982	1/7748
SNV	Breast	ADAMTS14_G553V_6	HLA-A24:02	TYGQDVGWSSW	0.9999	0.8187	0.3775	490.43	0.6938	2.31	1/982	1/7748
SNV	Breast	ADAMTS14_G553V_7	HLA-B58:01	QTYGQDVGW	0.9969	0.987	0.03	1.35	0.0137	2.31	1/982	1/7748
SNV	Breast	ADAMTS14_G553V_8	HLA-B58:01	EQTYGQDVGW	0.8163	0.9668	1.7219	204.32	0.4945	2.31	1/982	1/7748
SNV	Breast	ADAMTS14_G553V_5	HLA-B58:01	YGQDVGWSSW	0.9984	0.943	0.3505	55.04	0.3143	2.31	1/982	1/7748
SNV	Breast	AIM1_A307P_7	HLA-B58:01	KTFVGRPKL	0.9943	0.8652	0.2161	52.28	0.3076	28.45	1/982	1/7748
SNV	Breast	CAD_D591E_3	HLA-B58:01	LVEKSLKGW	0.9741	0.8727	0.2651	140.33	0.4406	62.09	1/982	1/7748
SNV	Breast	CTTNBP2NL_I455N_7	HLA-B58:01	SSYQVGNNQRF	0.9992	0.8149	0.3925	399.67	0.6122	19.65	1/982	1/7748
SNV	Breast	CYFIP1_E662D_5	HLA-B58:01	ASMMDYVLY	0.9808	0.6956	0.1545	47.89	0.2962	36.16	1/982	1/7748
SNV	Breast	DNMBP_V1060M_3	HLA-B58:01	KVMAAVSMW	0.999	0.9219	0.0101	1.26	0.0096	3.83	1/982	1/7748
SNV	Breast	DNMBP_V1060M_4	HLA-B58:01	VKVMAAVSMW	0.9489	0.9189	1.5038	146.88	0.4472	3.83	1/982	1/7748
SNV	Breast	ERLEC1_C344F_2	HLA-A24:02	YFFRGGVGW	0.9922	0.6453	0.1457	3.99	0.1223	116.33	1/982	1/7748
SNV	Breast	ERLEC1_C344F_3	HLA-A24:02	SYFFRGGVGW	0.9909	0.8759	0.2249	6.42	0.1717	116.33	1/982	1/7748
SNV	Breast	ERLEC1_C344F_2	HLA-A24:02	YFFRGGVGWW	0.9884	0.8673	0.4435	136.2	0.496	116.33	1/982	1/7748
SNV	Breast	ERLEC1_C344F_2	HLA-B58:01	YFFRGGVGW	0.6902	0.9865	0.4289	184.48	0.4798	116.33	1/982	1/7748
SNV	Breast	ERLEC1_C344F_4	HLA-B58:01	GSYFFRGGVGW	0.9992	0.9874	0.4228	46.87	0.2935	116.33	1/982	1/7748
SNV	Breast	ERLEC1_C344F_9	HLA-B18:01	KEFLSGSYF	0.9724	0.891	0.0696	22.34	0.0867	116.33	1/982	1/7748
SNV	Breast	EXOC1_L386F_1	HLA-C07:01	FRYAKLMEW	0.9925	0.6992	0.2249	13.7	0.028	28.17	1/982	1/7748
SNV	Breast	EXOC1_L386F_1	HLA-C07:01	FRYAKLMEWL	0.9954	0.8232	0.414	473.02	0.1707	28.17	1/982	1/7748
SNV	Breast	FNTB_G244E_2	HLA-B18:01	PEMEAHGGY	0.6974	0.5468	0.3653	382.58	0.2428	11.57	1/982	1/7748
SNV	Breast	IL6R_D458E_2	HLA-B18:01	YEISNTDY	0.9983	0.7666	0.154	67.24	0.132	7.36	1/982	1/7748
SNV	Breast	IL6R_D458E_2	HLA-B18:01	YEISNTDYF	0.9922	0.7568	0.0255	4.4	0.033	7.36	1/982	1/7748
SNV	Breast	IL6R_D458E_2	HLA-B18:01	YEISNTDYFF	0.9904	0.7208	0.1898	207.85	0.2009	7.36	1/982	1/7748
SNV	Breast	IQSEC2_V1028L_8	HLA-C07:01	FRQSFPLLEM	0.9995	0.6235	0.073	390.6	0.1573	6.15	1/982	1/7748
SNV	Breast	KLK8_G59V_1	HLA-B58:01	VGVLVGGNW	0.9963	0.981	0.1969	73.51	0.3523	7.24	1/982	1/7748
SNV	Breast	LRP5L_G242S_1	HLA-B58:01	SLAAPSRAW	0.9317	0.9839	0.2174	32.47	0.248	2.82	1/982	1/7748
SNV	Breast	MAGI2_H883R_1	HLA-B58:01	RSSPRSDYATY	0.9905	0.7706	0.5938	173.02	0.4706	3.49	1/982	1/7748
SNV	Breast	OGDHL_C818S_2	HLA-B58:01	NSSTPANYF	0.785	0.6274	0.3085	270.44	0.5419	4.15	1/982	1/7748
SNV	Breast	PRKG2_E141Q_10	HLA-B58:01	RTYDLNKPPQF	0.9998	0.9279	0.3246	33.9	0.2526	1.86	1/982	1/7748
SNV	Breast	PROC_M406V_1	HLA-B58:01	VVASFHGTW	0.9956	0.9839	0.0244	2.56	0.0447	1.29	1/982	1/7748
SNV	Breast	SEMA4A_P38S_2	HLA-B58:01	GSMPRVRYY	0.9892	0.6316	0.786	23.29	0.218	11.43	1/982	1/7748
SNV	Breast	TFEC_H230Y_2	HLA-A24:02	TYGLPTLASL	0.9964	0.6705	0.3123	29.4	0.3093	2.19	1/982	1/7748
SNV	Breast	TFEC_H230Y_8	HLA-B18:01	LEIQARTY	0.9953	0.8149	0.0425	13.21	0.0695	2.19	1/982	1/7748
SNV	Breast	TFEC_H230Y_10	HLA-B18:01	QELEIQARTY	0.9936	0.9067	0.0488	3.94	0.0302	2.19	1/982	1/7748
SNV	Breast	TFEC_H230Y_4	HLA-C07:01	ARTYGLPTL	0.9975	0.8185	0.0607	116.35	0.094	2.19	1/982	1/7748
SNV	Breast	TMEM57_R419L_3	HLA-B18:01	TELGIRSEM	0.9966	0.9175	0.0737	8.82	0.0589	41.66	1/982	1/7748
SNV	Breast	TRANK1_E1782D_6	HLA-B58:01	LSYAKDFQL	0.9887	0.8381	0.2651	348.4	0.5858	8.02	1/982	1/7748
SNV	Breast	TRMT12_T388S_5	HLA-B58:01	LSPASKPEW	0.9929	0.9728	0.0944	7.87	0.125	28.63	1/982	1/7748
SNV	Breast	TRMT12_T388S_2	HLA-B58:01	ASKPEWQRW	0.999	0.9811	0.1099	1.63	0.0221	28.63	1/982	1/7748
SNV	Breast	TRMT12_T388S_6	HLA-B58:01	MLSPASKPEW	0.9921	0.9861	0.201	56.97	0.3189	28.63	1/982	1/7748
SNV	Breast	TRMT12_T388S_3	HLA-B58:01	PASKPEWQRW	0.9856	0.9018	0.4096	434.78	0.6308	28.63	1/982	1/7748
SNV	Breast	TRMT12_T388S_7	HLA-B58:01	KMLSPASKPEW	0.9982	0.9937	0.3724	430.47	0.6286	28.63	1/982	1/7748
SNV	Breast	TTC21A_L573P_6	HLA-C07:01	VRDHPPYHL	0.996	0.6284	0.0168	57.41	0.0702	3.01	1/982	1/7748
SNV	Breast	VCAN_T570S_6	HLA-B58:01	GSDESSLIF	0.5059	0.8752	0.767	184.1	0.4795	24.5	1/982	1/7748
SNV	Breast	PCDH18_R1014H_3	HLA-C12:03	FQHLLPPSL	0.9994	0.9858	0.3784	81.47	0.4715	10.46	1/982	1/7748
SNV	Breast	POGZ_D1126G_5	HLA-C12:03	IVAIGEISL	0.9937	0.9663	0.6814	74.67	0.4511	25.42	1/982	1/7748
SNV	Breast	POGZ_D1126G_4	HLA-C12:03	VAIGEISLF	0.956	0.9808	0.0693	13.79	0.1624	25.42	1/982	1/7748
SNV	Breast	SMARCAL1_M566I_4	HLA-C12:03	RAAIPVLKV	0.6943	0.9871	0.2319	35.42	0.3083	22.47	1/982	1/7748
SNV	Breast	SMARCAL1_M566I_3	HLA-C12:03	AAIPVLKVA	0.9937	0.9903	0.817	369.48	0.9546	22.47	1/982	1/7748
SNV	Breast	ZNF131_V170I_10	HLA-B13:02	AESEPVEIEI	0.9955	0.5451	0.054	244.63	0.0916	10.6	1/982	1/7748
SNV	Breast	ZNF131_V170I_1	HLA-B13:02	IEIAEGTIEV	0.9848	0.5224	0.2596	268.15	0.0982	10.6	1/982	1/7748
SNV	Breast	ZNF131_V170I_7	HLA-B35:03	EPVEIEIEI	0.9337	0.9214	0.0899	10.59	0.0356	10.6	1/982	1/7748
SNV	Breast	CYP24A1_M416T_10	HLA-C03:04	YALPKGTVLTL	0.9999	0.992	0.1825	181.47	0.348	3.36	1/982	1/7748
SNV	Breast	MED14_L1446F_2	HLA-A33:01	NFTLPPGGR	0.9793	0.5895	0.443	325.47	0.1461	29.53	1/982	1/7748
SNV	Breast	REV3L_P446L_9	HLA-C03:04	RSFGNNKYL	0.9622	0.989	0.2131	60.35	0.2216	7.05	1/982	1/7748
SNV	Breast	SNAPC3_G178E_5	HLA-C05:01	MIEEEELIL	0.9998	0.9514	0.0968	66.47	0.1895	22.42	1/982	1/7748
SNV	Breast	COPS8_E21K_7	HLA-A02:01	KLLDQCKNQEL	0.9977	0.8187	0.7568	433.25	0.6438	60.45	1/982	1/7748
SNV	Breast	DNMBP_R801W_7	HLA-B44:03	TERDYIWDL	0.8608	0.9122	0.3942	488.05	0.41	9.49	1/982	1/7748
SNV	Breast	EFCAB6_T1193M_9	HLA-B44:03	FENFDTMKM	0.9797	0.9408	0.1984	341.53	0.379	1.06	1/982	1/7748
SNV	Breast	EPHA7_R895G_4	HLA-A02:01	KMIGNPNSL	0.9743	0.7268	0.367	13.63	0.1843	14.56	1/982	1/7748
SNV	Breast	EPHA7_R895G_4	HLA-C03:04	KMIGNPNSL	0.9921	0.9941	0.2016	43.84	0.1916	14.56	1/982	1/7748
SNV	Breast	FBXL4_V592A_5	HLA-A02:01	SLLDASFCSQI	0.9963	0.5213	0.672	362.62	0.6046	15.24	1/982	1/7748
SNV	Breast	HAUS8_L159V_7	HLA-A02:01	TLLLTLVSV	0.9707	0.6801	0.2069	31.42	0.2565	16.96	1/982	1/7748
SNV	Breast	HDAC1_V379F_9	HLA-A24:02	RMLPHAPGF	0.9792	0.6043	0.1545	14.04	0.2443	211.23	1/982	1/7748
SNV	Breast	IRS1_D98N_6	HLA-C03:04	FAIAANSEA	0.9929	0.9928	0.5296	361.53	0.4501	5.21	1/982	1/7748
SNV	Breast	KIF5A_E1017K_4	HLA-B44:03	YEAKDQAKL	0.8067	0.7625	0.2205	290.43	0.3663	7.73	1/982	1/7748
SNV	Breast	KIF5A_E1017K_4	HLA-B44:03	YEAKDQAKLF	0.9969	0.7295	0.1175	6.49	0.0994	7.73	1/982	1/7748
SNV	Breast	NIF3L1_N119I_5	HLA-C03:04	RALEIRVGI	0.9793	0.971	1.238	87.42	0.2605	63.58	1/982	1/7748
SNV	Breast	PFKFB2_P38L_9	HLA-C03:04	WASYMTNSL	0.999	0.9913	0.3531	36.4	0.178	14.69	1/982	1/7748
SNV	Breast	PHF8_D648H_8	HLA-A02:01	QVMEDEFHL	0.9731	0.5326	0.3574	75.14	0.3548	28.59	1/982	1/7748
SNV	Breast	PLCL2_D541E_4	HLA-A02:01	LLGEKLYTT	0.9596	0.7554	0.3157	35.14	0.2674	5.24	1/982	1/7748
SNV	Breast	PON3_S228L_2	HLA-A02:01	VLADQKYVYV	0.9992	0.5154	0.3842	7.46	0.1346	9.14	1/982	1/7748
SNV	Breast	PRKDC_Q2301H_7	HLA-C03:04	QSSEYFHAL	0.9997	0.9841	0.0478	92.69	0.2666	133.07	1/982	1/7748
SNV	Breast	PRKDC_Q2301H_1	HLA-C03:04	HALVNNMSF	0.9977	0.9878	0.1825	23.01	0.1498	133.07	1/982	1/7748
SNV	Breast	ROR1_T59S_1	HLA-A02:01	SLDEPMNNI	0.981	0.6918	0.581	2.23	0.0507	18.78	1/982	1/7748
SNV	Breast	ROR1_T59S_3	HLA-A02:01	YLSLDEPMNNI	0.9921	0.7715	1.7665	258.5	0.5485	18.78	1/982	1/7748
SNV	Breast	SNRPC_M106T_2	HLA-C03:04	MTGPPPPGM	0.9936	0.9934	0.1275	381.52	0.4589	140.55	1/982	1/7748
SNV	Breast	SP1_I17F_9	HLA-B44:03	DEMTAVVKF	0.9991	0.9187	0.034	1.4	0.0158	58.32	1/982	1/7748
SNV	Breast	SP1_I17F_10	HLA-B44:03	MDEMTAVVKF	0.9889	0.9361	0.8293	26.14	0.1719	58.32	1/982	1/7748
SNV	Breast	DNASE2_G42R_2	HLA-B39:01	SREAAQRGL	0.9914	0.7381	0.48	408.62	0.2894	212.34	1/982	1/7748
SNV	Breast	KDM5A_E524K_1	HLA-A02:01	KLFESQPDL	0.9931	0.7589	0.1676	2.63	0.0576	24.93	1/982	1/7748
SNV	Breast	KDM5A_E524K_1	HLA-A02:01	KLFESQPDLL	0.9942	0.7593	0.5235	14.9	0.1921	24.93	1/982	1/7748
SNV	Breast	KDM5A_E524K_7	HLA-C07:02	MRELAPKLF	0.8535	0.958	0.2402	94.27	0.1885	24.93	1/982	1/7748
SNV	Breast	KDM5A_E524K_8	HLA-C12:03	VMRELAPKL	0.9889	0.9579	0.7194	278.09	0.8523	24.93	1/982	1/7748
SNV	Breast	RAD54L2_E219K_7	HLA-C12:03	HIVDSSKSV	0.9775	0.9305	0.9714	276.83	0.8508	6.59	1/982	1/7748
SNV	Breast	TBP_P131R_2	HLA-B39:01	ARLPGTTPL	0.9985	0.9677	0.0851	4.87	0.0286	28.61	1/982	1/7748
SNV	Breast	TBP_P131R_3	HLA-B07:02	TARLPGTTPL	0.9993	0.516	0.5607	162.24	0.3028	28.61	1/982	1/7748
SNV	Breast	TBP_P131R_2	HLA-C07:02	ARLPGTTPL	0.8094	0.976	0.0181	19.87	0.0766	28.61	1/982	1/7748
SNV	Breast	TBP_P131R_2	HLA-C07:02	ARLPGTTPLY	0.9945	0.9495	0.1784	389.1	0.3604	28.61	1/982	1/7748
SNV	Breast	TRMT1_T488M_2	HLA-A02:01	KMDAPASAL	0.9681	0.6454	0.4466	75.04	0.3546	30.23	1/982	1/7748
SNV	Breast	TRMT1_T488M_2	HLA-C12:03	KMDAPASAL	0.9677	0.9859	0.825	296.24	0.874	30.23	1/982	1/7748
SNV	Breast	WDR19_G886V_3	HLA-A02:01	KVVDLLPHV	0.9972	0.724	0.0338	1.71	0.036	6.47	1/982	1/7748
SNV	Breast	WDR19_G886V_3	HLA-C12:03	KVVDLLPHV	0.9409	0.9592	0.4612	67.61	0.4279	6.47	1/982	1/7748
SNV	Breast	YKT6_G164D_6	HLA-A02:01	SLLERDEKL	0.9483	0.6497	0.6165	4.44	0.0951	71.65	1/982	1/7748
SNV	Breast	YKT6_G164D_3	HLA-B39:01	ERDEKLDDL	0.9787	0.5179	0.309	83.07	0.1586	71.65	1/982	1/7748
SNV	Breast	ASIC1_T289I_9	HLA-A24:02	IYLPPPWGI	0.9948	0.7756	0.0304	1.27	0.0155	12.76	1/982	1/7748
SNV	Breast	ASIC1_T289I_9	HLA-A24:02	IYLPPPWGIC	0.9694	0.6248	0.5169	418.56	0.6659	12.76	1/982	1/7748
SNV	Breast	CSMD1_T590M_2	HLA-C03:03	FMASSGIIL	0.9923	0.9922	0.0929	14.5	0.1087	2.65	1/982	1/7748
SNV	Breast	CYTH3_S186Y_2	HLA-A24:02	QYTDTCYVL	0.9613	0.5054	0.0508	25.69	0.2959	4.19	1/982	1/7748
SNV	Breast	DENND6A_F447L_10	HLA-A24:02	RYFLELTQSL	0.9984	0.6284	0.203	19.9	0.274	3.15	1/982	1/7748
SNV	Breast	DENND6A_F447L_9	HLA-C07:02	YFLELTQSL	0.7925	0.9621	0.1136	4.53	0.0169	3.15	1/982	1/7748
SNV	Breast	DENND6A_F447L_9	HLA-C03:03	YFLELTQSL	0.9764	0.9943	1.0149	393.19	0.4637	3.15	1/982	1/7748
SNV	Breast	F5_S1245I_5	HLA-C03:03	SPDLIHTTL	0.9965	0.9777	0.5607	215.38	0.3715	1.18	1/982	1/7748
SNV	Breast	FOCAD_A450V_6	HLA-C03:03	TAVIPVPAF	0.9973	0.9883	0.1586	23.95	0.1523	4.43	1/982	1/7748
SNV	Breast	FOCAD_A450V_5	HLA-C03:03	AVIPVPAFL	0.9984	0.9885	0.0539	5.32	0.0522	4.43	1/982	1/7748
SNV	Breast	FOCAD_A450V_3	HLA-C03:03	IPVPAFLLL	0.9804	0.9527	0.5966	57.85	0.2171	4.43	1/982	1/7748
SNV	Breast	HSPA14_G486R_7	HLA-B08:01	LTMKRDRSL	0.9963	0.5793	0.1575	73.51	0.146	15.1	1/982	1/7748
SNV	Breast	INTS7_G736E_1	HLA-A25:01	ETAHADSEY	0.9944	0.8036	0.0145	71.29	0.022	10.38	1/982	1/7748
SNV	Breast	INTS7_G736E_7	HLA-B40:01	QEYGSTETA	0.8749	0.7328	0.2436	252.59	0.5628	10.38	1/982	1/7748
SNV	Breast	KDM5A_E939Q_3	HLA-C03:03	AVQKAMAEL	0.9984	0.9759	0.342	442.28	0.4828	4.5	1/982	1/7748
SNV	Breast	LSR_S546A_1	HLA-C07:02	ARDPHYDDF	0.7429	0.9149	0.0899	162.47	0.2459	255.74	1/982	1/7748
SNV	Breast	MAGI3_K1170Q_5	HLA-C03:03	IVPEQKSTL	0.9991	0.9896	0.1688	284.57	0.4114	4.75	1/982	1/7748
SNV	Breast	MRPL13_R124G_5	HLA-A24:02	TMMEGLHLF	0.9946	0.5157	0.0227	1.79	0.0441	38.17	1/982	1/7748
SNV	Breast	MRPL13_R124G_6	HLA-A24:02	RTMMEGLHLF	0.9976	0.6676	1.096	52.94	0.3722	38.17	1/982	1/7748
SNV	Breast	MRPL13_R124G_5	HLA-C07:02	TMMEGLHLF	0.8096	0.9744	0.418	112.49	0.2063	38.17	1/982	1/7748
SNV	Breast	MRPL13_R124G_6	HLA-C03:03	RTMMEGLHL	0.9939	0.9939	0.9391	127.13	0.2994	38.17	1/982	1/7748
SNV	Breast	MRPL13_R124G_5	HLA-C03:03	TMMEGLHLF	0.9603	0.9923	0.6614	241.12	0.3869	38.17	1/982	1/7748
SNV	Breast	PROM1_P687A_4	HLA-C03:03	RVLAIEQSL	0.9932	0.992	0.797	181	0.3477	45.05	1/982	1/7748
SNV	Breast	SEC31A_E44Q_8	HLA-C03:03	FSTNASLQI	0.9902	0.9851	0.1417	374.35	0.4558	51.13	1/982	1/7748
SNV	Breast	SIN3A_R1052P_4	HLA-A24:02	TYQPKAEQL	0.9924	0.5487	0.1365	2.27	0.0723	11.54	1/982	1/7748
SNV	Breast	SIN3A_R1052P_4	HLA-A24:02	TYQPKAEQLM	0.9765	0.7856	0.416	101.95	0.4554	11.54	1/982	1/7748
SNV	Breast	SIN3A_R1052P_4	HLA-C07:02	TYQPKAEQL	0.8702	0.9831	0.0435	53.43	0.1387	11.54	1/982	1/7748
SNV	Breast	STK4_R470W_6	HLA-A24:02	KYQSKWQPI	0.993	0.5161	0.0785	158.27	0.5169	11.68	1/982	1/7748
SNV	Breast	STK4_R470W_2	HLA-A24:02	KWQPILDAI	0.9919	0.5647	0.1629	7.94	0.1961	11.68	1/982	1/7748
SNV	Breast	TBP_A238D_3	HLA-C07:02	KYDRVVQKL	0.9708	0.8927	0.0323	79.83	0.1727	13.59	1/982	1/7748
SNV	Breast	AGO1_P482S_8	HLA-C03:03	ISKDAGMSI	0.9947	0.9734	0.1883	233.86	0.3828	11.17	1/982	1/7748
SNV	Breast	ANK2_C2853Y_1	HLA-A02:01	YLVSEGKEL	0.9124	0.7903	0.6242	41.9	0.2846	6.69	1/982	1/7748
SNV	Breast	ANK2_C2853Y_8	HLA-C03:03	SSSSLPHYL	0.9993	0.988	0.0907	376.06	0.4565	6.69	1/982	1/7748
SNV	Breast	ANK2_C2853Y_1	HLA-C03:03	YLVSEGKEL	0.9465	0.9856	0.2749	47.37	0.1973	6.69	1/982	1/7748
SNV	Breast	DCUN1D2_D242A_5	HLA-A02:01	VLIDAFVEYA	0.9986	0.7162	0.4818	15.96	0.1982	8.46	1/982	1/7748
SNV	Breast	DNPEP_N96D_5	HLA-C03:03	YVPGDGFSL	0.997	0.9926	0.15	14.23	0.1068	43.14	1/982	1/7748
SNV	Breast	ESRP2_A288E_8	HLA-C03:03	NVARGGVEL	0.9968	0.9841	0.3719	161.6	0.3321	8.79	1/982	1/7748
SNV	Breast	GTF3C2_I837F_6	HLA-A02:01	LQLEAFHKV	0.9885	0.6006	0.0897	150.02	0.4581	27.22	1/982	1/7748
SNV	Breast	GTF3C2_I837F_7	HLA-A02:01	RLQLEAFHKV	0.9692	0.6855	0.5258	80.69	0.3639	27.22	1/982	1/7748
SNV	Breast	PEF1_K140N_6	HLA-A02:01	SMKELNQAL	0.8775	0.5702	0.7411	495.08	0.6733	125.15	1/982	1/7748
SNV	Breast	PTGFRN_S343L_6	HLA-A02:01	SLVHSLPHV	0.9948	0.7982	0.01	1.62	0.0322	164.45	1/982	1/7748
SNV	Breast	PTGFRN_S343L_9	HLA-C07:01	DRDSLVHSL	0.9842	0.5462	0.3686	248.52	0.124	164.45	1/982	1/7748
SNV	Breast	TAF4B_P575S_5	HLA-C03:03	SQFPSASIL	0.9887	0.992	0.4631	152.67	0.3243	4.85	1/982	1/7748
SNV	Breast	WDFY3_N2713T_6	HLA-A02:01	YLMHLTTL	0.9944	0.5013	1.2656	220.03	0.5224	11.51	1/982	1/7748
SNV	Breast	WDFY3_N2713T_6	HLA-B08:01	YLMHLTTL	0.9884	0.976	1.1514	47.6	0.1136	11.51	1/982	1/7748
SNV	Breast	ARHGAP31_A1041E_4	HLA-C03:04	ISLEEGKEL	0.9995	0.9922	0.1854	127.34	0.2996	16.53	1/982	1/7748
SNV	Breast	BCL2_T96N_1	HLA-B15:01	NLRQAGDDF	0.982	0.5849	0.7824	468.32	0.5079	66	1/982	1/7748
SNV	Breast	BCL2_T96N_10	HLA-B07:02	SPVPPVVHLNL	0.9996	0.5565	0.221	89.99	0.2554	66	1/982	1/7748
SNV	Breast	CCDC136_C420Y_9	HLA-B15:01	NQSEKELLY	0.999	0.8084	0.1666	65.47	0.247	1.83	1/982	1/7748
SNV	Breast	CCDC136_C420Y_1	HLA-C07:02	YRLQKLHL	0.9997	0.9335	0.5784	346.72	0.3434	1.83	1/982	1/7748
SNV	Breast	CIB2_F183L_9	HLA-C07:02	KAPDFLSTL	0.8782	0.9247	0.3508	164.67	0.2473	4.36	1/982	1/7748
SNV	Breast	CIB2_F183L_9	HLA-C03:04	KAPDFLSTL	0.9993	0.9809	0.0043	5.24	0.0517	4.36	1/982	1/7748
SNV	Breast	CNTNAP1_L1111F_9	HLA-B15:01	FVRDYMAVF	0.9974	0.9545	0.0344	49.65	0.2171	4.03	1/982	1/7748
SNV	Breast	CNTNAP1_L1111F_9	HLA-C03:04	FVRDYMAVF	0.9663	0.9865	0.3364	180.38	0.3472	4.03	1/982	1/7748
SNV	Breast	GAS7_A283V_2	HLA-C03:04	LVDEAEVHL	0.999	0.9954	0.0668	288.26	0.4135	49.73	1/982	1/7748
SNV	Breast	HDAC4_G769E_6	HLA-A68:01	EVHSAEAAR	0.9982	0.7767	0.1565	5.12	0.0557	6.05	1/982	1/7748
SNV	Breast	ICAM1_E363K_4	HLA-B15:01	ATPKDNGRSF	0.9926	0.8212	1.5109	499.79	0.52	26.35	1/982	1/7748
SNV	Breast	KRI1_A324V_4	HLA-A03:01	RSIVSSVRRK	0.9926	0.5145	0.489	104.92	0.2855	37.81	1/982	1/7748
SNV	Breast	REV3L_L2818M_9	HLA-C03:04	ATNPKPVKM	0.9969	0.9848	0.1275	119.67	0.2932	10.81	1/982	1/7748
SNV	Breast	TRPV6_L121R_1	HLA-B15:01	RALHIAALY	0.9942	0.8964	0.107	122.31	0.3071	7.8	1/982	1/7748
SNV	Breast	TRPV6_L121R_2	HLA-C07:02	ERALHIAAL	0.8462	0.9429	0.3186	176.5	0.2552	7.8	1/982	1/7748
SNV	Breast	ABR_K550N_10	HLA-B57:01	RVFRDTAEPNW	0.9999	0.9923	0.0474	21.05	0.1611	14.19	1/982	1/7748
SNV	Breast	APEH_N84S_7	HLA-C02:02	FAGPAGSSV	0.9621	0.9906	0.1044	89.19	0.1469	42.07	1/982	1/7748
SNV	Breast	ARHGEF26_P648S_2	HLA-B57:01	FSLVSSSRW	0.9998	0.9851	0.0262	4.34	0.0568	5.88	1/982	1/7748
SNV	Breast	CBL_F133L_9	HLA-B57:01	KTKQTISLL	0.9882	0.795	0.3936	18.01	0.1463	4.03	1/982	1/7748
SNV	Breast	CTDSP1_P75S_8	HLA-C02:02	GAIPKQTSV	0.9866	0.9751	0.2789	193.47	0.2607	55.12	1/982	1/7748
SNV	Breast	FBXL6_L238V_6	HLA-C02:02	VTADAVVML	0.7863	0.9673	0.1378	23.55	0.0543	36.88	1/982	1/7748
SNV	Breast	GIMAP8_E240K_1	HLA-C02:02	KQNPGTSEL	0.9957	0.9743	0.8534	96.4	0.1539	4.93	1/982	1/7748
SNV	Breast	IKBKB_H137Y_9	HLA-B57:01	IASALRYLY	0.9986	0.8958	0.2823	149.66	0.3234	3.97	1/982	1/7748
SNV	Breast	LGALSL_E86K_4	HLA-B57:01	VAIKLKAVF	0.9965	0.775	0.1993	50.87	0.2332	7.96	1/982	1/7748
SNV	Breast	PDS5A_M187V_2	HLA-C02:02	HVLDLMSSI	0.873	0.9637	0.8301	85.58	0.1442	23.42	1/982	1/7748
SNV	Breast	PHLDA1_G390R_6	HLA-B57:01	HSQPHRHRL	0.9638	0.9523	1.4543	479.26	0.4841	13.2	1/982	1/7748
SNV	Breast	RIN2_F218L_7	HLA-B57:01	ISFADLLRL	0.9926	0.9466	0.4079	208	0.3714	15.37	1/982	1/7748
SNV	Breast	TIMELESS_R390Q_5	HLA-B57:01	MAFNQAASF	0.9799	0.9902	0.1119	48.19	0.2291	9	1/982	1/7748
SNV	Breast	TIMELESS_R390Q_5	HLA-C02:02	MAFNQAASF	0.7721	0.9683	0.0025	28.78	0.0647	9	1/982	1/7748
SNV	Breast	TLE6_P531L_4	HLA-C02:02	YSMLAGTKV	0.6357	0.9882	0.296	137.19	0.205	9.93	1/982	1/7748
SNV	Breast	ZNF324_Y9H_5	HLA-B57:01	AVHFSQEEW	0.998	0.9975	0.0764	3.37	0.0413	2.16	1/982	1/7748
SNV	Breast	ZNF324_Y9H_6	HLA-B57:01	VAVHFSQEEW	0.9999	0.9959	0.1139	73.52	0.2608	2.16	1/982	1/7748
SNV	Breast	ALDH8A1_V147F_2	HLA-A24:02	GFAGLISPW	0.9865	0.6307	0.2895	277.82	0.5951	1.05	1/982	1/7748
SNV	Breast	ALDH8A1_V147F_10	HLA-A24:02	HYTVRAPVGF	0.9896	0.5294	0.2505	20.12	0.2749	1.05	1/982	1/7748
SNV	Breast	ALDH8A1_V147F_6	HLA-C12:03	RAPVGFAGL	0.8192	0.9893	0.3176	147.7	0.6313	1.05	1/982	1/7748
SNV	Breast	AMOTL2_E370K_7	HLA-C12:03	RASSKRKAL	0.5933	0.9854	0.4673	76.81	0.4577	15.99	1/982	1/7748
SNV	Breast	ARHGEF25_G498A_8	HLA-C12:03	LGRPRGPAV	0.8459	0.9923	1.5297	161.07	0.6588	12.94	1/982	1/7748
SNV	Breast	C15orf48_E74Q_8	HLA-B38:01	QQWKPIEQL	0.8147	0.9845	0.0441	250.98	0.1246	6.37	1/982	1/7748
SNV	Breast	COL6A3_D1672H_2	HLA-B38:01	EHGDSIQVGL	0.9928	0.8724	0.2045	381.95	0.1564	324.75	1/982	1/7748
SNV	Breast	COL6A3_D1672H_5	HLA-C12:03	TVYEHGDSI	0.855	0.9626	0.4941	5.29	0.0636	324.75	1/982	1/7748
SNV	Breast	DHRS4L2_P154L_7	HLA-C12:03	MTKAVVLEM	0.9979	0.9415	0.0498	13.1	0.1547	27.78	1/982	1/7748
SNV	Breast	ENPEP_L772I_3	HLA-A24:02	QWINGTVSL	0.9622	0.5733	0.2104	39.4	0.3406	7.21	1/982	1/7748
SNV	Breast	FGD3_H177Q_8	HLA-C12:03	ETYVKRLQL	0.6064	0.9283	1.023	166.95	0.6702	2.61	1/982	1/7748
SNV	Breast	GPC6_T96A_7	HLA-C12:03	TSHFVRATF	0.9012	0.9705	0.0922	22.59	0.2279	11.71	1/982	1/7748
SNV	Breast	HMCN1_P793S_8	HLA-A02:01	TLDVGSPSV	0.9932	0.5908	0.2651	3.05	0.0669	7.8	1/982	1/7748
SNV	Breast	HMCN1_P793S_9	HLA-A02:01	ITLDVGSPSV	0.9817	0.6378	0.7316	172.21	0.4817	7.8	1/982	1/7748
SNV	Breast	MARK3_E356K_2	HLA-B38:01	DKITATYLL	0.9686	0.8712	0.7349	389.83	0.158	25.89	1/982	1/7748
SNV	Breast	N4BP2_M366V_5	HLA-C12:03	MWNPVIPAF	0.7716	0.9738	1.626	206.64	0.7453	3	1/982	1/7748
SNV	Breast	NPIPB5_P594H_4	HLA-C12:03	SSLHFHPQL	0.9534	0.9869	0.1451	202.11	0.7369	1.09	1/982	1/7748
SNV	Breast	SLC6A17_V507M_6	HLA-A24:02	VFAFLMGLLF	0.9875	0.5912	0.4344	140.61	0.5004	12	1/982	1/7748
SNV	Breast	SLC6A17_V507M_3	HLA-A02:01	FLMGLLFV	0.9983	0.5438	1.1725	111.05	0.4067	12	1/982	1/7748
SNV	Breast	SLC6A17_V507M_5	HLA-C12:03	FAFLMGLLF	0.8191	0.9943	0.1311	64.05	0.4153	12	1/982	1/7748
SNV	Breast	SSH1_S739I_8	HLA-C12:03	AALEPPAIL	0.9827	0.9742	0.08	10.98	0.1336	12.2	1/982	1/7748
SNV	Breast	STAM_C33Y_7	HLA-A02:01	GLILDIYDKV	0.9857	0.709	0.702	17.26	0.2049	22.14	1/982	1/7748
SNV	Breast	TBC1D22A_R398W_9	HLA-A02:01	KMLEELVSWI	0.9938	0.7093	0.3101	32.97	0.2612	20.59	1/982	1/7748
SNV	Breast	TMEM163_A101P_3	HLA-A24:02	TLPLAVAAF	0.9715	0.9138	0.4724	32.5	0.32	1.32	1/982	1/7748
SNV	Breast	TMEM163_A101P_6	HLA-A02:01	IIVTLPLAV	0.9661	0.5738	0.4853	270.6	0.5559	1.32	1/982	1/7748
SNV	Breast	TMEM163_A101P_8	HLA-C12:03	FSIIVTLPL	0.9951	0.958	0.0291	276.5	0.8504	1.32	1/982	1/7748
SNV	Breast	TMEM163_A101P_6	HLA-C12:03	IIVTLPLAV	0.9485	0.9777	0.8334	357.83	0.9425	1.32	1/982	1/7748
SNV	Breast	TOMM22_G122E_4	HLA-A02:01	ILLEPNTGL	0.9785	0.7056	0.2691	1.61	0.0321	147.16	1/982	1/7748
SNV	Breast	TP53_L252P_4	HLA-C12:03	RPIPTIITL	0.5439	0.9795	0.6583	7.29	0.0928	97	1/982	1/7748
SNV	Breast	ZKSCAN4_L502V_9	HLA-C12:03	RSFTRNRSV	0.771	0.941	0.4101	25.88	0.2483	7.71	1/982	1/7748
SNV	Breast	ZNF844_M522I_6	HLA-C12:03	HTFKCIKGL	0.6432	0.9227	0.1621	439.51	1.0219	6.01	1/982	1/7748
SNV	Breast	BAX_I133M_1	HLA-C07:02	MRTIMGWTL	0.9377	0.9842	0.1631	45.71	0.1248	46.79	1/982	1/7748
SNV	Breast	BPIFB1_L468F_7	HLA-A02:01	SLTKDAFVL	0.947	0.6144	0.5258	267.61	0.5541	2.79	1/982	1/7748
SNV	Breast	CDK6_H139Q_7	HLA-B13:02	LDFLHSQRV	0.9121	0.831	0.4963	315.27	0.1121	2.58	1/982	1/7748
SNV	Breast	DROSHA_Q37P_5	HLA-A30:01	SFRPPNLRL	0.7419	0.7085	1.0154	415.07	0.1555	15.99	1/982	1/7748
SNV	Breast	DROSHA_Q37P_4	HLA-C07:02	FRPPNLRL	0.9939	0.8529	0.2402	163.73	0.2467	15.99	1/982	1/7748
SNV	Breast	DROSHA_Q37P_4	HLA-C07:02	FRPPNLRLL	0.8992	0.8504	0.0139	3.7	0.0126	15.99	1/982	1/7748
SNV	Breast	DROSHA_Q37P_4	HLA-C06:02	FRPPNLRL	0.9699	0.9886	0.2687	410.86	0.1878	15.99	1/982	1/7748
SNV	Breast	DROSHA_Q37P_5	HLA-C06:02	SFRPPNLRL	0.6257	0.9764	0.5623	314.3	0.1623	15.99	1/982	1/7748
SNV	Breast	DZIP3_P371L_3	HLA-C07:02	IRLKISLKF	0.8702	0.7215	0.0676	19.55	0.076	14.01	1/982	1/7748
SNV	Breast	G3BP2_R295L_9	HLA-B07:02	QPPRVREQL	0.9985	0.6224	0.1021	162.27	0.3028	112.53	1/982	1/7748
SNV	Breast	HIST1H3J_K28R_7	HLA-A30:01	ATKAARRSA	0.9577	0.822	0.2959	57.5	0.0285	1.51	1/982	1/7748
SNV	Breast	INTU_D33H_7	HLA-B13:02	EDYDFEHRV	0.8589	0.6275	0.5606	423.42	0.1396	4.69	1/982	1/7748
SNV	Breast	ITIH6_A368P_4	HLA-A02:01	ALLPAASVL	0.9735	0.6667	0.5235	79.8	0.3625	3.08	1/982	1/7748
SNV	Breast	MAPRE3_P138A_3	HLA-B07:02	APAPNPGDQI	0.9732	0.5385	0.21	271.63	0.3482	11.01	1/982	1/7748
SNV	Breast	NAA30_D316N_8	HLA-A02:01	AMVEGDCNEV	0.9832	0.6209	0.6895	282.66	0.563	21.22	1/982	1/7748
SNV	Breast	PILRB_I63V_5	HLA-B13:02	WELAVVPNV	0.9981	0.9784	0.0519	167.44	0.0679	1.22	1/982	1/7748
SNV	Breast	VANGL2_T122M_7	HLA-A02:01	ALLSFLMPL	0.9815	0.6766	0.0288	18.28	0.2097	7.67	1/982	1/7748
SNV	Breast	XYLT1_D646N_4	HLA-A02:01	SLSNVTLTL	0.9853	0.7565	0.1691	3.83	0.0791	33.07	1/982	1/7748
SNV	Breast	ASPHD2_Y155S_8	HLA-B07:02	GIREQGRSL	0.9969	0.6597	0.5401	156.02	0.2994	2.7	1/982	1/7748
SNV	Breast	ATP5C1_A66S_1	HLA-C07:02	SRIYGLGSL	0.8185	0.9572	0.1285	30.71	0.0991	217.55	1/982	1/7748
SNV	Breast	ATP5C1_A66S_1	HLA-C07:01	SRIYGLGSL	0.9987	0.7251	0.0456	67.16	0.0743	217.55	1/982	1/7748
SNV	Breast	ATRN_H447Y_2	HLA-C07:02	GYSAHIVTL	0.634	0.9353	0.0323	12.83	0.0588	43.53	1/982	1/7748
SNV	Breast	EPHX1_T396N_4	HLA-C07:02	YVPNGFSAF	0.6312	0.9342	0.896	85.17	0.1786	117.71	1/982	1/7748
SNV	Breast	EPHX1_T396N_5	HLA-C07:02	VYVPNGFSAF	0.9835	0.9638	0.1884	331.35	0.3367	117.71	1/982	1/7748
SNV	Breast	IFT122_L981P_4	HLA-C07:02	SRFPLHSL	0.9913	0.9466	0.0969	70.86	0.1629	22.1	1/982	1/7748
SNV	Breast	IFT122_L981P_4	HLA-C07:01	SRFPLHSL	0.9999	0.7104	0.1053	237.24	0.1222	22.1	1/982	1/7748
SNV	Breast	JAK1_T1070P_5	HLA-A24:02	SFGVPLHEL	0.9932	0.5742	0.293	181.22	0.5357	91.21	1/982	1/7748
SNV	Breast	KCNH3_R771L_3	HLA-B07:02	SPLRTAPRPRL	0.9996	0.7141	0.3655	226.19	0.3321	1.88	1/982	1/7748
SNV	Breast	KCNH3_R771L_1	HLA-C07:02	LRTAPRPRL	0.8197	0.9569	0.4018	263.58	0.303	1.88	1/982	1/7748
SNV	Breast	KCNH3_R771L_1	HLA-C07:01	LRTAPRPRL	0.9946	0.7515	0.1959	161.88	0.108	1.88	1/982	1/7748
SNV	Breast	MAP2K3_D156Y_6	HLA-C07:02	YRKVLYKNM	0.8254	0.7594	0.1925	319.57	0.3314	28.66	1/982	1/7748
SNV	Breast	NFE2L3_D385N_5	HLA-C07:02	LYDLNINIF	0.9002	0.8863	0.1019	352.19	0.3457	13.48	1/982	1/7748
SNV	Breast	NLGN4X_S767L_2	HLA-C07:02	RLPDDIPLM	0.8601	0.9744	0.8716	243.48	0.293	6.95	1/982	1/7748
SNV	Breast	PCNT_E1325Q_6	HLA-B07:02	SAAKAQLAL	0.9826	0.5665	0.1126	105.57	0.2681	31.36	1/982	1/7748
SNV	Breast	POLR2G_L67F_9	HLA-A24:02	IQPGRGFVF	0.9839	0.6357	0.3152	8.28	0.2007	85.6	1/982	1/7748
SNV	Breast	POLR2G_L67F_10	HLA-A24:02	VIQPGRGFVF	0.9946	0.6494	0.7255	328.97	0.6235	85.6	1/982	1/7748
SNV	Breast	POLR2G_L67P_5	HLA-A03:01	RGFVPYPVK	0.9573	0.5171	0.4205	245.39	0.3896	85.6	1/982	1/7748
SNV	Breast	SPPL3_R365Q_8	HLA-A24:02	AYLKGDLQRMW	0.9996	0.8851	0.6815	186.75	0.5399	45.27	1/982	1/7748
SNV	Breast	UBR4_S246T_8	HLA-C07:02	FIAQNVATL	0.6433	0.9835	1.1904	281.63	0.3127	31	1/982	1/7748
SNV	Breast	XPO7_R1067Q_3	HLA-C07:02	FRQEVNDSM	0.9145	0.9739	0.0249	21.37	0.0793	54.97	1/982	1/7748
SNV	Breast	XPO7_R1067Q_3	HLA-C07:01	FRQEVNDSM	0.9947	0.7727	0.044	28.17	0.0464	54.97	1/982	1/7748
SNV	Breast	YIPF1_A283S_5	HLA-C07:02	YFFDSPEM	0.9892	0.9072	0.896	80.82	0.1737	50.19	1/982	1/7748
SNV	Breast	YIPF1_A283S_6	HLA-C07:02	AYFFDSPEM	0.682	0.9313	0.2294	46.04	0.1253	50.19	1/982	1/7748
SNV	Breast	ZRANB1_L432V_6	HLA-C07:02	RLDSRVYAL	0.9184	0.9133	0.3713	313.11	0.3284	21.59	1/982	1/7748
SNV	Breast	ZRANB1_L432V_7	HLA-C07:02	TRLDSRVYAL	0.9992	0.8942	0.2626	257.11	0.2994	21.59	1/982	1/7748
SNV	Breast	CELSR3_R301G_5	HLA-A03:01	GLPAGPEARK	0.9735	0.6971	0.4969	453.9	0.4889	3.92	1/982	1/7748
SNV	Breast	CEP250_R2150Q_4	HLA-A02:01	RLQQELERL	0.9832	0.712	0.7786	220.83	0.523	13.34	1/982	1/7748
SNV	Breast	DTNB_S552P_2	HLA-B35:01	TPAGSTPTH	0.9516	0.8256	0.295	124.27	0.3297	13.88	1/982	1/7748
SNV	Breast	GPC6_D185N_9	HLA-B35:01	NPQYHFSENY	0.9798	0.654	0.5271	190.08	0.3732	31.8	1/982	1/7748
SNV	Breast	LAMA4_E354K_7	HLA-A02:01	SLLSDVKEL	0.99	0.895	0.6069	5.94	0.1167	36.08	1/982	1/7748
SNV	Breast	LAMA4_E354K_6	HLA-A02:01	LLSDVKELV	0.9989	0.8671	0.1084	3.98	0.083	36.08	1/982	1/7748
SNV	Breast	LAMA4_E354K_7	HLA-A02:01	SLLSDVKELV	0.9977	0.8417	0.3887	45.28	0.2921	36.08	1/982	1/7748
SNV	Breast	TATDN1_H232Y_10	HLA-B35:01	APWCGVKSTY	0.9908	0.8931	0.1454	54.62	0.2519	20.69	1/982	1/7748
SNV	Breast	TEKT2_D361N_7	HLA-A02:01	KLAQAQNAL	0.9727	0.7971	0.7085	127.36	0.4301	8.79	1/982	1/7748
SNV	Breast	AP4E1_L283F_6	HLA-B27:05	LRILGFLGK	0.9995	0.9334	0.2085	5.98	0.155	7.32	1/982	1/7748
SNV	Breast	HSPG2_V2652M_1	HLA-C03:04	MVARQPQAI	0.9656	0.9833	0.3531	419.58	0.4742	63.58	1/982	1/7748
SNV	Breast	KRT6B_R30H_8	HLA-B27:05	ARLPGVSHSGF	1	0.7549	0.0047	2.15	0.0691	7.9	1/982	1/7748
SNV	Breast	KRT6B_R30H_3	HLA-C03:04	VSHSGFSSI	0.9976	0.986	0.0519	184.86	0.3505	7.9	1/982	1/7748
SNV	Breast	MYBBP1A_V763A_8	HLA-B27:05	FREQLMTAL	0.9512	0.892	0.3583	82.82	0.3871	16.07	1/982	1/7748
SNV	Breast	MYBBP1A_V763A_2	HLA-C03:04	TALQAGKAL	0.9985	0.9843	0.1374	11.35	0.0909	16.07	1/982	1/7748
SNV	Breast	PGM1_R221H_6	HLA-B27:05	NRLKIHIDAM	0.9998	0.7497	0.729	446.69	0.5866	46.8	1/982	1/7748
SNV	Breast	SEPHS2_V404I_9	HLA-B40:01	GEGHQAWII	0.9722	0.8168	0.1853	119.21	0.4774	468.82	1/982	1/7748
SNV	Breast	SH3TC1_L275F_6	HLA-C03:04	AAPEPFIPF	0.9787	0.9894	0.0519	49.07	0.1998	4.35	1/982	1/7748
SNV	Breast	TFRC_T504M_9	HLA-C03:04	VSASPLLYM	0.9973	0.9688	0.1475	152.49	0.3242	13.85	1/982	1/7748
SNV	Breast	TFRC_T504M_8	HLA-C03:04	SASPLLYML	0.9998	0.9788	0.1189	17.03	0.1247	13.85	1/982	1/7748
SNV	Breast	AARS2_R199H_5	HLA-B07:02	VPASHVLSF	0.9986	0.6	0.0214	1.81	0.0286	25.85	1/982	1/7748
SNV	Breast	CAMK2D_I304T_8	HLA-C07:02	RRKLKGATL	0.9365	0.9622	0.3121	79.84	0.1727	42.51	1/982	1/7748
SNV	Breast	NID1_G256R_2	HLA-C07:02	SRQQGVWVF	0.9388	0.9045	0.0301	9.83	0.048	386.28	1/982	1/7748
SNV	Breast	PGD_L290V_7	HLA-A03:01	AVFARCVSSLK	0.998	0.6314	0.3426	209.76	0.3692	282	1/982	1/7748
SNV	Breast	PHACTR1_R579L_9	HLA-C07:02	SRHLTRFHL	0.9517	0.9365	0.0187	48.25	0.1296	6.19	1/982	1/7748
SNV	Breast	ARL8B_I172S_6	HLA-B58:01	KDNIDSTLQW	0.9855	0.9559	0.5673	36.67	0.2625	185.67	1/982	1/7748
SNV	Breast	ATP8B4_D443E_5	HLA-B58:01	KSQAEREFQF	0.9992	0.9566	0.631	29.63	0.2398	2.66	1/982	1/7748
SNV	Breast	CELF2_V206L_6	HLA-B58:01	CSSPILVKF	0.9986	0.5933	0.0185	22.62	0.2154	15.3	1/982	1/7748
SNV	Breast	CELF2_V206L_7	HLA-B58:01	GCSSPILVKF	0.978	0.7062	1.4428	110.67	0.4066	15.3	1/982	1/7748
SNV	Breast	CHI3L1_D38V_5	HLA-C07:01	YREGVGSCF	0.9183	0.8683	0.25	126.57	0.0983	253.86	1/982	1/7748
SNV	Breast	CLN3_Q300E_2	HLA-B50:01	QELYQAGVFA	0.7691	0.8346	0.4116	47.91	0.139	17.72	1/982	1/7748
SNV	Breast	EFHC1_M109V_1	HLA-B58:01	VSTEEQYRI	0.981	0.8679	0.9136	86.9	0.3743	7.09	1/982	1/7748
SNV	Breast	EGFLAM_T691N_7	HLA-B58:01	RSEDPLNLGNW	0.9995	0.8955	0.235	43.2	0.2832	8.83	1/982	1/7748
SNV	Breast	EGFLAM_T691N_8	HLA-C07:01	LRSEDPLNL	0.9919	0.8829	0.1399	88.17	0.0822	8.83	1/982	1/7748
SNV	Breast	FBXO34_G663R_8	HLA-B58:01	QALPYGPRY	0.851	0.9184	0.3925	15.18	0.1743	34.23	1/982	1/7748
SNV	Breast	FBXO34_G663R_7	HLA-B58:01	ALPYGPRYW	0.9068	0.9841	1.041	322.96	0.5726	34.23	1/982	1/7748
SNV	Breast	FBXO34_G663R_8	HLA-B58:01	QALPYGPRYW	0.998	0.9618	0.1709	1.87	0.0268	34.23	1/982	1/7748
SNV	Breast	FCRLB_D370V_5	HLA-A02:05	ALKPVVDLL	0.9878	0.5316	0.4788	12.88	0.0863	2.08	1/982	1/7748
SNV	Breast	GPRC5B_F226L_7	HLA-B58:01	FTLCGKLKRW	0.999	0.9706	0.1898	284.3	0.5505	12.79	1/982	1/7748
SNV	Breast	HAUS5_K58N_2	HLA-B58:01	KNIRGNLLW	0.9985	0.8615	0.078	3.64	0.0664	6.31	1/982	1/7748
SNV	Breast	IGSF10_E2559Q_6	HLA-B58:01	GVPKPQITW	0.9254	0.7634	0.1258	4.12	0.0733	3.54	1/982	1/7748
SNV	Breast	IGSF10_E2559Q_7	HLA-B58:01	LGVPKPQITW	0.9974	0.7488	0.2572	6.19	0.1036	3.54	1/982	1/7748
SNV	Breast	MYH10_D1435N_8	HLA-A02:05	ELDDLTVNL	0.8723	0.506	0.9709	87.74	0.2379	67.83	1/982	1/7748
SNV	Breast	NEK10_Q19H_7	HLA-B58:01	KSTDKQHEI	0.9932	0.7356	0.3821	168.31	0.4667	3.63	1/982	1/7748
SNV	Breast	NRF1_A21V_9	HLA-A02:05	ATIEAHAVV	0.958	0.6066	0.8109	71.85	0.2193	14.53	1/982	1/7748
SNV	Breast	PKD1_S1735R_2	HLA-C07:01	TRVTLSAEL	0.9978	0.675	0.0786	258.95	0.126	12.64	1/982	1/7748
SNV	Breast	PTGDR_C178G_5	HLA-B58:01	FVQYGPGTW	0.9113	0.9795	0.078	14.78	0.172	1.26	1/982	1/7748
SNV	Breast	PTGDR_C178G_6	HLA-B58:01	KFVQYGPGTW	0.9111	0.9877	0.7065	87.96	0.3759	1.26	1/982	1/7748
SNV	Breast	RANGAP1_A351V_9	HLA-A02:05	EVLEGFNMV	0.8795	0.7432	1.2034	421.71	0.4744	44.67	1/982	1/7748
SNV	Breast	RANGAP1_A351V_3	HLA-A02:05	NMVKVLASL	0.9804	0.6833	0.1231	355.44	0.4413	44.67	1/982	1/7748
SNV	Breast	TGS1_Q215L_1	HLA-B50:01	LEKHPGQAL	0.5354	0.7693	0.0998	228.55	0.2609	36.55	1/982	1/7748
SNV	Breast	TTC21A_G341A_6	HLA-B58:01	VATELAYLF	0.9968	0.9042	0.0301	6.31	0.1054	1.98	1/982	1/7748
SNV	Breast	UBQLN4_G71R_2	HLA-C07:01	HRIKDGLTV	0.9861	0.5141	0.1399	54.87	0.0686	76.78	1/982	3/7748
SNV	Breast	URB1_Y198S_2	HLA-B58:01	ASVQFALSF	0.9926	0.9324	0.0227	12.07	0.1546	15.99	1/982	1/7748
SNV	Breast	ZMYM4_L295V_5	HLA-B50:01	QEGEVKISA	0.8007	0.9073	0.0715	25.55	0.1036	52.21	1/982	1/7748
SNV	Breast	ZMYM4_L295V_7	HLA-B58:01	KTQEGEVKI	0.9582	0.9672	0.5122	114.05	0.4109	52.21	1/982	1/7748
SNV	Breast	ANKMY1_S135L_4	HLA-B58:01	ISLLEEEKTEW	0.9997	0.9887	0.2425	38.63	0.2691	3.29	1/982	1/7748
SNV	Breast	PACS2_P664A_3	HLA-B58:01	KSADEESSQKF	0.9998	0.8467	0.2324	204.93	0.4949	27.76	1/982	1/7748
SNV	Breast	APPL2_K573N_4	HLA-B18:01	QENNRLVGF	0.9939	0.7936	0.0749	27.4	0.0946	36.87	1/982	1/7748
SNV	Breast	APPL2_K573N_7	HLA-C12:03	AAHQENNRL	0.7056	0.9503	0.2956	396.27	0.981	36.87	1/982	1/7748
SNV	Breast	CAPN1_V164A_3	HLA-C12:03	VVADDLLPI	0.9561	0.9423	0.7398	64.77	0.4179	138.79	1/982	1/7748
SNV	Breast	DOK5_K175N_7	HLA-C12:03	VQNPRVNLI	0.9032	0.98	1.4606	256.13	0.8242	1.78	1/982	1/7748
SNV	Breast	GTF2IRD2_N214S_4	HLA-B07:02	GPISVKTEPM	0.9985	0.5045	0.1843	52.51	0.2099	1.6	1/982	1/7748
SNV	Breast	LBR_A504T_6	HLA-A03:01	VIFRGTNSQK	0.996	0.5045	0.1405	6.71	0.0733	21.46	1/982	1/7748
SNV	Breast	SH3BP1_I49M_5	HLA-C12:03	AAHNMHKRL	0.6805	0.9756	0.5343	243.18	0.8065	6.03	1/982	1/7748
SNV	Breast	BRWD1_S1223C_8	HLA-B14:02	NRFYRRLCAL	0.9907	0.734	0.2998	242.04	0.0614	27.53	1/982	1/7748
SNV	Breast	GNL3L_G232V_2	HLA-C03:04	FVAENLMRV	0.9626	0.9944	0.4491	22.8	0.1491	14.9	1/982	1/7748
SNV	Breast	GNL3L_G232V_1	HLA-C03:04	VAENLMRVL	0.9995	0.9728	0.3088	322.27	0.4315	14.9	1/982	1/7748
SNV	Breast	GNL3L_G232V_2	HLA-C08:02	FVAENLMRV	0.9138	0.994	0.8628	104.06	0.0663	14.9	1/982	1/7748
SNV	Breast	MAT2B_V179F_10	HLA-B15:01	VLENNLGAAF	0.9942	0.6717	0.5336	351.26	0.4584	32.35	1/982	1/7748
SNV	Breast	MAT2B_V179F_3	HLA-C03:04	AAFLRIPIL	0.9994	0.9872	0.2614	24.01	0.1524	32.35	1/982	1/7748
SNV	Breast	PRMT7_P577R_3	HLA-B15:01	SERWQILTF	0.8503	0.8887	0.2886	328.56	0.447	15.63	1/982	1/7748
SNV	Breast	STXBP2_L534F_6	HLA-B15:01	RAGPRFIVY	0.9963	0.8305	0.2361	8.91	0.0855	40.61	1/982	1/7748
SNV	Breast	ABT1_D104Y_1	HLA-C07:02	YYTEGWVEF	0.7829	0.987	0.0181	6.45	0.0303	35.51	1/982	1/7748
SNV	Breast	WDFY3_K3381N_4	HLA-C07:02	SRLNPGYRW	0.6706	0.9801	1.643	309.36	0.3266	13.68	1/982	1/7748
SNV	Breast	ATG16L1_R122W_5	HLA-C07:02	QRKDWEMQM	0.9774	0.9662	0.0548	117.35	0.2108	28.64	1/982	1/7748
SNV	Breast	ATP2C2_R184G_1	HLA-B13:02	GELVPGDVV	0.9429	0.9319	0.1673	389.35	0.1313	16.29	1/982	1/7748
SNV	Breast	CRYBB2_G57V_6	HLA-A02:01	VLVQAVPWV	0.9775	0.7699	0.0495	4.95	0.1035	3.23	1/982	1/7748
SNV	Breast	DAND5_V159L_9	HLA-C07:02	ARKRWAPVL	0.8868	0.9677	0.2126	283.81	0.3139	1.26	1/982	1/7748
SNV	Breast	DAND5_V159L_7	HLA-C07:02	KRWAPVLLW	0.8032	0.9634	0.7825	166.68	0.2486	1.26	1/982	1/7748
SNV	Breast	DIXDC1_S341I_7	HLA-A02:01	QLIIIQIRL	0.8607	0.6334	1.0335	305.89	0.5758	9.79	1/982	1/7748
SNV	Breast	DNAJC9_D140E_2	HLA-B13:02	GEMDQIMESV	0.9982	0.9107	0.0389	135.81	0.0623	24.14	1/982	1/7748
SNV	Breast	DNAJC9_D140E_8	HLA-C07:02	AYLDFKGEM	0.7981	0.9693	0.1108	35.6	0.1085	24.14	1/982	1/7748
SNV	Breast	ESYT3_Q320H_2	HLA-C07:02	AHKDNFLGL	0.5477	0.9739	0.418	422.67	0.3726	2.54	1/982	1/7748
SNV	Breast	HOXB2_A72V_3	HLA-C07:02	KRVEDGPAL	0.9495	0.9063	0.1481	95.99	0.1902	29.51	1/982	1/7748
SNV	Breast	ITGAL_L969M_9	HLA-C07:02	IHDHNIPTM	0.6341	0.9208	0.1136	247.72	0.2951	10.58	1/982	1/7748
SNV	Breast	LGI4_S58L_3	HLA-A02:01	SLLLVRTGV	0.9569	0.6031	0.2955	309.11	0.5775	3.33	1/982	1/7748
SNV	Breast	LRRK2_R1771T_8	HLA-A03:01	KITVPSCTK	0.9937	0.5416	0.1073	30.86	0.167	3.53	1/982	1/7748
SNV	Breast	PFN2_A132P_6	HLA-C07:02	KAYSMPKYL	0.9533	0.9248	1.4279	225.94	0.2842	211.92	1/982	1/7748
SNV	Breast	PFN2_M131I_9	HLA-A02:01	GLNKKAYSI	0.9333	0.5133	0.6863	351.06	0.5981	211.92	1/982	1/7748
SNV	Breast	STAG1_N941I_1	HLA-A02:01	ILDRTSAHV	0.9876	0.5116	0.2355	23.47	0.231	32.05	1/982	1/7748
SNV	Breast	STAG1_N941I_3	HLA-B07:02	GPILDRTSA	0.9965	0.7443	0.2475	166.64	0.3052	32.05	1/982	1/7748
SNV	Breast	TMEM178A_T206N_3	HLA-A02:01	SLNQHVAGL	0.9592	0.7336	0.3574	10.16	0.1599	1.06	1/982	1/7748
SNV	Breast	TMPRSS4_G99R_1	HLA-B07:02	RPAVAVRL	0.9995	0.8457	0.3131	13.64	0.1355	5.35	1/982	1/7748
SNV	Breast	TMPRSS4_G99R_2	HLA-C07:02	ERPAVAVRL	0.6979	0.9331	0.6911	346.02	0.3431	5.35	1/982	1/7748
SNV	Breast	TNRC6B_R590H_6	HLA-C07:02	SHNSGHRSY	0.5827	0.8758	0.2811	292.54	0.3183	9.85	1/982	1/7748
SNV	Breast	URI1_S516T_6	HLA-A02:01	VLLEATEET	0.9461	0.7982	0.7911	104.41	0.3971	85.29	1/982	1/7748
SNV	Breast	BARX2_S74L_9	HLA-C12:03	SLRAYPLLL	0.9766	0.9768	1.6601	295.82	0.8735	15.71	1/982	1/7748
SNV	Breast	BARX2_S74L_7	HLA-C12:03	RAYPLLLVI	0.9096	0.9606	0.0693	3.43	0.0333	15.71	1/982	1/7748
SNV	Breast	BARX2_S74L_1	HLA-C12:03	LVITRQPTV	0.9939	0.9758	1.2404	97.03	0.5141	15.71	1/982	1/7748
SNV	Breast	CDK2AP1_P45L_7	HLA-C12:03	LSDYGPLSL	0.841	0.9837	0.5118	225.84	0.7791	54.92	1/982	1/7748
SNV	Breast	FASTKD3_A184T_8	HLA-C12:03	SLVTALQTL	0.9451	0.9889	0.5413	194.46	0.7222	15.79	1/982	1/7748
SNV	Breast	FASTKD3_A184T_6	HLA-C12:03	VTALQTLIL	0.9379	0.9557	0.5413	428.25	1.0112	15.79	1/982	1/7748
SNV	Breast	FASTKD3_A184T_5	HLA-C12:03	TALQTLILL	0.943	0.9618	0.2434	106.34	0.5386	15.79	1/982	1/7748
SNV	Breast	ITFG1_G478V_7	HLA-C12:03	TTVDANVYL	0.8983	0.9365	0.2878	35.93	0.3108	39.87	1/982	1/7748
SNV	Breast	MLEC_V139L_8	HLA-C12:03	FAQSQQKLF	0.9563	0.9665	0.0961	187.68	0.7087	84.91	1/982	1/7748
SNV	Breast	MTMR9_L220P_4	HLA-B18:01	DEKPINATL	0.9812	0.9741	0.0569	5.82	0.0399	7.04	1/982	1/7748
SNV	Breast	MYO10_S969T_7	HLA-C12:03	VGSEFSTEL	0.9787	0.9846	0.3984	133.7	0.5998	20.57	1/982	1/7748
SNV	Breast	RAB3GAP2_V982A_6	HLA-C12:03	RSFLEASEM	0.9285	0.9916	0.1747	22.42	0.2268	19.3	1/982	1/7748
SNV	Breast	ARHGAP26_E259Q_6	HLA-B44:03	KENPLQHKTI	0.9768	0.9167	0.3761	277.06	0.3626	9.87	1/982	1/7748
SNV	Breast	ASCC3_D1669H_5	HLA-B44:03	TEYYHGKTRRY	0.9993	0.8156	0.4605	15.82	0.1464	34.13	1/982	1/7748
SNV	Breast	ATP6V0A1_S797L_7	HLA-C03:04	LIMEGLLAF	0.9922	0.9834	0.2163	56.15	0.214	22.65	1/982	1/7748
SNV	Breast	ATP6V0A1_S797L_1	HLA-C03:04	LAFLHALRL	0.998	0.9954	0.1096	16.24	0.12	22.65	1/982	1/7748
SNV	Breast	BIRC6_C4770Y_7	HLA-B44:03	VEIMAQYEEW	0.9989	0.9749	0.0243	7.17	0.1048	24.97	1/982	1/7748
SNV	Breast	BIRC6_C4770Y_1	HLA-B44:03	YEEWIADIQQY	0.9979	0.9455	0.232	11.76	0.1318	24.97	1/982	1/7748
SNV	Breast	BTRC_L76V_6	HLA-B44:03	PEKNSVRQTY	0.8388	0.8657	1.1383	133.76	0.3054	13.56	1/982	1/7748
SNV	Breast	CHD9_E388Q_3	HLA-B40:01	LEQNLLHQV	0.9769	0.504	0.0819	90.54	0.4481	15.16	1/982	1/7748
SNV	Breast	CNKSR1_S342F_1	HLA-C03:04	FASLGPEPL	0.9997	0.9939	0.0125	5.9	0.0562	16.85	1/982	1/7748
SNV	Breast	COL14A1_S821F_3	HLA-C03:04	SVFAPGKTL	0.997	0.9948	0.0424	2.74	0.029	57.44	1/982	1/7748
SNV	Breast	CTTNBP2NL_H603Y_3	HLA-C03:04	KTYSQAASL	0.993	0.9751	0.1349	13.21	0.0997	19.23	1/982	1/7748
SNV	Breast	ERLEC1_R32Q_8	HLA-B40:01	LEASGGGQAL	0.9939	0.709	0.1099	4.64	0.175	128.19	1/982	1/7748
SNV	Breast	FSD1L_P292A_6	HLA-B44:03	GEYSDAVTL	0.9771	0.96	0.2069	7.09	0.1042	2.97	1/982	1/7748
SNV	Breast	GATAD1_Q169E_2	HLA-B44:03	AEIRGFIQDQY	0.9999	0.8715	0.1384	18.98	0.1556	23.46	1/982	1/7748
SNV	Breast	GLYCTK_L518F_7	HLA-C04:01	VMDTHLFFL	0.9997	0.6482	0.0594	52	0.0566	2.57	1/982	1/7748
SNV	Breast	HDLBP_E625Q_7	HLA-B44:03	AENSNSQTI	0.991	0.931	0.218	2.6	0.0521	241.1	1/982	1/7748
SNV	Breast	HDLBP_E625Q_7	HLA-B44:03	AENSNSQTII	0.9733	0.9144	0.3802	231.23	0.3484	241.1	1/982	1/7748
SNV	Breast	HMCN1_C4692Y_8	HLA-B44:03	AETQMQVY	0.9992	0.9535	0.1802	101.81	0.2848	28.91	1/982	1/7748
SNV	Breast	HSPA4_S85C_6	HLA-B44:03	VEAEKCNLAY	0.9962	0.8876	0.0452	37.65	0.201	109	1/982	1/7748
SNV	Breast	IARS_L381F_9	HLA-B44:03	ADKSIIRTF	0.8937	0.7878	0.2702	13.35	0.138	78.01	1/982	1/7748
SNV	Breast	IGF1R_M1001I_6	HLA-B44:03	REKITISREL	0.6062	0.9307	0.5944	482.82	0.4088	30.41	1/982	1/7748
SNV	Breast	IL6ST_R479C_8	HLA-B44:03	QEDGTVHCTY	0.9984	0.9132	0.0563	1.96	0.0369	128.49	1/982	1/7748
SNV	Breast	KIF13A_L160V_2	HLA-A68:01	DVLDPKGSR	0.9979	0.7804	0.3752	46.55	0.2748	39.9	1/982	1/7748
SNV	Breast	KIF4A_D777H_5	HLA-C03:04	ILAQHVAQL	0.9962	0.9808	0.2326	104.42	0.279	32.93	1/982	1/7748
SNV	Breast	KTN1_S794F_4	HLA-A24:02	SFAFLVEEL	0.9496	0.5246	0.5068	437.47	0.6737	80.12	1/982	1/7748
SNV	Breast	MTMR6_L423F_9	HLA-B44:03	FEFSEAFLF	0.9787	0.9905	0.009	25.71	0.1711	28.87	1/982	1/7748
SNV	Breast	NF1_F2351L_9	HLA-C03:04	HTLDSLRIL	0.9987	0.9818	0.2379	101.77	0.2763	10.8	1/982	1/7748
SNV	Breast	NRDE2_E153Q_4	HLA-A24:02	VWLQDIQAV	0.8244	0.7445	0.5444	186.41	0.5396	3.81	1/982	1/7748
SNV	Breast	PCTP_D74H_4	HLA-A24:02	IYMHSDYRKQW	0.9986	0.6989	0.6401	83.21	0.427	31.88	1/982	1/7748
SNV	Breast	PIK3C2G_D504H_3	HLA-C03:04	YAHFQPVNV	0.9955	0.9964	0.0519	14.89	0.1114	1.15	1/982	1/7748
SNV	Breast	PKN3_M648I_8	HLA-C03:04	FVPGGDLIM	0.9812	0.9912	0.1404	92.76	0.2667	7.3	1/982	1/7748
SNV	Breast	PTPN4_E757Q_9	HLA-A68:01	VVMLTTQVQR	0.9229	0.5668	0.2963	318.91	0.5834	6.28	1/982	1/7748
SNV	Breast	ROBO1_I765M_3	HLA-B44:03	SEMKFAKTL	0.9982	0.9274	0.0694	1.37	0.0139	24.02	1/982	1/7748
SNV	Breast	RSAD1_E114Q_1	HLA-C03:04	QAVAQAAHL	0.9996	0.9934	0.0836	273.99	0.4053	96.96	1/982	1/7748
SNV	Breast	SLC4A11_E491Q_4	HLA-C03:04	RSTQEIIAL	0.999	0.9904	0.3364	93.69	0.2677	2.36	1/982	1/7748
SNV	Breast	SNX2_E372Q_5	HLA-B44:03	AEVEQKIDQL	0.9974	0.791	0.1589	64.53	0.2509	78.92	1/982	1/7748
SNV	Breast	SOAT1_P290A_2	HLA-C03:04	VAIPTVNQY	0.9574	0.9855	0.348	324.75	0.4328	44.85	1/982	1/7748
SNV	Breast	SOAT1_P290A_2	HLA-C03:04	VAIPTVNQYL	0.9995	0.9782	0.1511	404.35	0.4683	44.85	1/982	1/7748
SNV	Breast	STK17A_D267H_6	HLA-A24:02	PFLGNHKQETF	0.9986	0.5643	0.6092	220.1	0.5627	27.1	1/982	1/7748
SNV	Breast	SUSD5_S470L_3	HLA-A24:02	YQLTLPWRF	0.9429	0.7615	0.1614	31.91	0.318	6.19	1/982	1/7748
SNV	Breast	SUSD5_S470L_4	HLA-A24:02	KYQLTLPWRF	0.9937	0.8495	0.1053	3.16	0.1033	6.19	1/982	1/7748
SNV	Breast	TANK_L345V_2	HLA-C03:04	LVDPSDAPF	0.9883	0.9684	0.1971	461.18	0.4895	37.01	1/982	1/7748
SNV	Breast	TRIM37_R731K_1	HLA-C03:04	KLQDLGMEL	0.9505	0.9965	0.2916	350.65	0.4452	126.7	1/982	1/7748
SNV	Breast	TTYH2_E495D_3	HLA-C04:01	RYDNVPLI	0.9998	0.5156	0.0882	181.9	0.0949	3.73	1/982	1/7748
SNV	Breast	UACA_E1052Q_4	HLA-C03:04	VLIQKSHEM	0.9945	0.9784	0.2975	118.69	0.2923	38.81	1/982	1/7748
SNV	Breast	WDR3_L349V_5	HLA-B44:03	VEMSVQDEI	0.9393	0.9383	0.1853	103.46	0.286	10.51	1/982	1/7748
SNV	Breast	ZCCHC9_E30Q_3	HLA-A24:02	SFQGTSQNL	0.8679	0.6864	0.5169	423.31	0.6679	10.8	1/982	1/7748
SNV	Breast	ZNF692_H88Y_1	HLA-C03:04	YAHSRECSL	0.9995	0.9835	0.009	29.88	0.1656	19.09	1/982	1/7748
SNV	Breast	CBLB_I77V_5	HLA-B35:01	YILDVLPDTY	0.9706	0.8561	1.1295	324.38	0.4345	10.94	1/982	1/7748
SNV	Breast	RASAL2_L658F_10	HLA-C04:01	IFEDPTDSDF	0.9992	0.6677	0.0633	58.85	0.0591	8.77	1/982	1/7748
SNV	Breast	SERPINB8_A349E_4	HLA-C04:01	RFCEDHPFLF	0.9997	0.8787	0.8169	190.75	0.0983	5.25	1/982	1/7748
SNV	Breast	SETD7_D125N_3	HLA-B35:01	YPNGGSLVG	0.9471	0.8843	0.4365	171.84	0.3629	26.06	1/982	1/7748
SNV	Breast	ZNF841_E562A_6	HLA-B35:01	VIHTGANPY	0.9503	0.8917	0.1903	316.75	0.4315	13.81	1/982	1/7748
SNV	Breast	C18orf8_V270M_2	HLA-A02:01	NMVDNLVVV	0.9934	0.7268	0.1465	3.89	0.0799	34.38	1/982	1/7748
SNV	Breast	C18orf8_V270M_4	HLA-A02:01	ALNMVDNLVVV	0.9948	0.627	1.4208	165.16	0.4746	34.38	1/982	1/7748
SNV	Breast	C18orf8_V270M_1	HLA-C05:01	MVDNLVVV	1	0.9834	0.3719	471.51	0.396	34.38	1/982	1/7748
SNV	Breast	ENGASE_S347L_8	HLA-C07:02	GRFDTDKLL	0.8525	0.9388	0.1884	110.11	0.204	6.92	1/982	1/7748
SNV	Breast	ERCC6_R767H_1	HLA-A02:01	HLTDEQHKV	0.9885	0.6563	0.2542	19.79	0.2165	4.19	1/982	1/7748
SNV	Breast	INPP4B_G220R_2	HLA-C07:02	SRKDNLPFL	0.8168	0.9469	0.0466	11.02	0.053	9	1/982	1/7748
SNV	Breast	KANK1_E828Q_4	HLA-C07:02	HYIQRIQKL	0.6635	0.7791	0.0133	2.47	0.0076	13.16	1/982	1/7748
SNV	Breast	KANK1_E828Q_7	HLA-C05:01	GLDHYIQRI	0.9999	0.895	0.1799	14.82	0.1093	13.16	1/982	1/7748
SNV	Breast	KIAA0895_L272V_6	HLA-A02:01	YANPAVPSV	0.9926	0.5056	0.2489	15.11	0.1933	10.91	1/982	1/7748
SNV	Breast	KIAA0895_L272V_6	HLA-C07:02	YANPAVPSV	0.9215	0.9679	1.1223	410.59	0.3684	10.91	1/982	1/7748
SNV	Breast	KIAA0895_L272V_6	HLA-C05:01	YANPAVPSV	0.9995	0.9834	0.0726	3.01	0.0398	10.91	1/982	1/7748
SNV	Breast	KIAA0895_L272V_6	HLA-C05:01	YANPAVPSVL	0.9992	0.9596	0.1381	269.31	0.3252	10.91	1/982	1/7748
SNV	Breast	MICAL3_E213D_3	HLA-C05:01	VSDYEFEVI	0.9999	0.9347	0.0711	78.52	0.2013	6.28	1/982	1/7748
SNV	Breast	PBX1_N258Y_8	HLA-C07:02	YFYSHLSY	0.973	0.7815	1.6252	453.05	0.3829	142.47	1/982	1/7748
SNV	Breast	RC3H1_I476V_1	HLA-C05:01	VLPDEGAVDL	0.9987	0.9366	0.1533	155.19	0.2595	12.6	1/982	1/7748
SNV	Breast	SYMPK_R709H_7	HLA-C07:02	IFKRPSHQF	0.514	0.9034	0.172	199.01	0.2693	36.84	1/982	1/7748
SNV	Breast	SYMPK_R709H_5	HLA-C07:02	KRPSHQFQY	0.9521	0.8486	0.0104	49.21	0.1313	36.84	1/982	1/7748
SNV	Breast	SYMPK_R709H_1	HLA-C07:02	HQFQYLHVL	0.9618	0.9401	0.0114	224.52	0.2835	36.84	1/982	1/7748
SNV	Breast	TMC5_S744T_7	HLA-A02:01	LMDFVFTLV	0.9965	0.5739	0.0416	225.42	0.5263	5.66	1/982	1/7748
SNV	Breast	TMC5_S744T_8	HLA-A02:01	LLMDFVFTLV	0.9983	0.5715	0.0126	16.28	0.2	5.66	1/982	1/7748
SNV	Breast	TMC5_S744T_8	HLA-C05:01	LLMDFVFTL	0.9676	0.9815	1.0821	110.69	0.2292	5.66	1/982	1/7748
SNV	Breast	TMC5_S744T_7	HLA-C05:01	LMDFVFTLV	0.999	0.9875	0.1741	131.07	0.243	5.66	1/982	1/7748
SNV	Breast	TP53BP1_I1617S_4	HLA-C05:01	AADSSLDNL	0.9998	0.8907	0.0261	14.97	0.1097	29.15	1/982	1/7748
SNV	Breast	TRIB1_R316H_9	HLA-B07:02	SPKARCLIHSL	0.9998	0.5084	0.1621	374.48	0.3765	60.23	1/982	2/7748
SNV	Breast	UBE2D2_P61S_8	HLA-C07:02	IHFPTDYSF	0.7735	0.9385	0.2181	67.47	0.1589	136.86	1/982	1/7748
SNV	Breast	UBE2D2_P61S_1	HLA-C07:02	SFKPPKVAF	0.6887	0.9672	0.0791	18.05	0.0731	136.86	1/982	1/7748
SNV	Breast	VGLL3_R228W_3	HLA-A02:01	YMWHHHPHA	0.9924	0.634	0.0136	6.78	0.1266	1.95	1/982	1/7748
SNV	Breast	VPS13B_V643A_6	HLA-C07:02	TRHTSATLL	0.8007	0.9276	0.07	55	0.1413	32.39	1/982	1/7748
SNV	Breast	ZNF532_V415I_9	HLA-C05:01	LSSPASAAI	0.9969	0.9629	0.4	463.1	0.3937	7.14	1/982	1/7748
SNV	Breast	ARL5A_R96G_4	HLA-C15:05	STDGERISV	0.9994	0.789	0.0813	33.89	0.1378	24.32	1/982	1/7748
SNV	Breast	ERCC6L2_H218Y_8	HLA-C15:05	SVNEFAKYI	0.9973	0.9224	0.725	33.74	0.1374	3.14	1/982	1/7748
SNV	Breast	ERCC6L2_H218Y_8	HLA-C16:01	SVNEFAKYI	0.7426	0.9798	1.669	161.08	0.5275	3.14	1/982	1/7748
SNV	Breast	HCFC1_T1028K_4	HLA-C15:05	TTNKATTTV	0.9993	0.9004	0.2076	38.22	0.1496	29.13	1/982	1/7748
SNV	Breast	HCFC1_T1028K_4	HLA-C16:01	TTNKATTTV	0.9011	0.9837	0.4605	250.9	0.6413	29.13	1/982	1/7748
SNV	Breast	ITGA7_D533N_8	HLA-C15:05	SIAPRSINL	0.9994	0.8809	0.4545	22.84	0.0999	1.76	1/982	1/7748
SNV	Breast	ITGA7_D533N_8	HLA-C16:01	SIAPRSINL	0.9956	0.9738	0.667	7.3	0.0731	1.76	1/982	1/7748
SNV	Breast	KIF4A_G302A_3	HLA-C16:01	SLAGNSHTL	0.9086	0.9877	0.678	65.86	0.3399	16.25	1/982	1/7748
SNV	Breast	KIF4A_G302A_2	HLA-C16:01	LAGNSHTLM	0.6475	0.9881	0.1804	435.05	0.799	16.25	1/982	1/7748
SNV	Breast	TREM1_P155S_2	HLA-C16:01	ISPTTTKAL	0.7863	0.9732	0.3132	157.5	0.5221	1.16	1/982	1/7748
SNV	Breast	AARS_T608M_4	HLA-A32:01	HTAMHILNF	0.9833	0.7042	0.1918	41.87	0.0955	44.92	1/982	1/7748
SNV	Breast	AARS_T608M_7	HLA-C12:03	MSNHTAMHI	0.9408	0.9629	0.1782	303.49	0.8822	44.92	1/982	1/7748
SNV	Breast	AARS_T608M_4	HLA-C12:03	HTAMHILNF	0.668	0.9778	0.2956	24.56	0.2405	44.92	1/982	1/7748
SNV	Breast	AKR7L_W147L_4	HLA-C12:03	YAALEVAEI	0.984	0.9873	0.1172	14.35	0.1685	5.2	1/982	1/7748
SNV	Breast	FAM102A_R60L_4	HLA-C07:01	VRWLKRFTF	0.9983	0.7241	0.023	66.84	0.0742	75.94	1/982	1/7748
SNV	Breast	GATB_Q86P_7	HLA-A32:01	KLFSGSPVRF	0.9989	0.9708	0.1703	5.57	0.0274	4.52	1/982	1/7748
SNV	Breast	ING5_N70Y_7	HLA-A32:01	RLQKIQYAY	0.9655	0.9026	0.0537	5.81	0.028	4.41	1/982	1/7748
SNV	Breast	ING5_N70Y_1	HLA-C12:03	YAYSKCKEY	0.6329	0.9745	0.0103	4.09	0.0435	4.41	1/982	1/7748
SNV	Breast	NAV1_P986L_8	HLA-B35:03	LPSPPALLM	0.9955	0.8609	0.009	1.86	0.0064	4.07	1/982	1/7748
SNV	Breast	NAV1_P986L_6	HLA-B35:03	SPPALLMSL	0.9078	0.6012	0.0455	74.48	0.0907	4.07	1/982	1/7748
SNV	Breast	TP53_L265R_3	HLA-B08:01	NLRGRNSF	0.9986	0.6872	0.4998	9.46	0.0376	36.12	1/982	2/7748
SNV	Breast	UHRF1BP1_R427Q_4	HLA-B08:01	SLFQRKADSL	0.991	0.5467	0.4241	305.06	0.274	5.75	1/982	1/7748
SNV	Breast	DLD_S28F_3	HLA-A02:01	GLFAVPLRT	0.9357	0.7648	0.8325	45.3	0.2922	10.69	1/982	1/7748
SNV	Breast	ENPP1_E824A_8	HLA-C07:02	RRVIRNQAI	0.9117	0.9373	0.34	144.18	0.233	8.19	1/982	1/7748
SNV	Breast	ENPP1_E824A_7	HLA-C03:04	RVIRNQAIL	0.9655	0.9923	1.1876	408.51	0.4699	8.19	1/982	1/7748
SNV	Breast	ENPP1_E824A_2	HLA-C03:04	QAILIPTHF	0.9968	0.992	0.408	303.22	0.4217	8.19	1/982	1/7748
SNV	Breast	ERCC5_V434A_1	HLA-C07:02	ARDGKGIPF	0.879	0.9257	0.0573	40.67	0.1172	11.27	1/982	1/7748
SNV	Breast	GFPT2_S481N_4	HLA-C07:02	AYTNQFISL	0.6016	0.9549	0.0638	32.43	0.1025	3.37	1/982	1/7748
SNV	Breast	HIST2H2AC_K96M_1	HLA-A02:01	MLLGKVTIA	0.993	0.6188	0.2375	72.28	0.3498	2.46	1/982	1/7748
SNV	Breast	HIST2H2AC_K96M_9	HLA-C07:02	IRNDEELNM	0.8893	0.9243	0.1784	77.69	0.1705	2.46	1/982	1/7748
SNV	Breast	MDN1_A4126T_1	HLA-A02:01	TLSDLFKHL	0.9954	0.5983	0.1848	37.75	0.2744	1.92	1/982	1/7748
SNV	Breast	NTMT1_K17N_7	HLA-C07:02	QFYSKANTY	0.5377	0.9636	0.4496	59.8	0.1489	9.63	1/982	1/7748
SNV	Breast	PAPOLG_E668V_6	HLA-C07:02	KFIRLVSTF	0.8452	0.8981	0.3785	190.22	0.264	2.44	1/982	1/7748
SNV	Breast	SEPT10_R35I_3	HLA-C07:02	IKIENIRSL	0.826	0.8864	0.5604	139.27	0.2293	10.19	1/982	1/7748
SNV	Breast	SRCAP_Q450L_9	HLA-C03:04	LSMEELLQL	0.9998	0.9851	0.0545	25.38	0.1558	17.42	1/982	1/7748
SNV	Breast	SUPT6H_D99N_5	HLA-A02:01	RLEDNDFDL	0.8826	0.6816	0.8011	191.22	0.4996	19.56	1/982	1/7748
SNV	Breast	TARS_E444A_1	HLA-A02:01	ALSGALTGL	0.9543	0.7013	0.1395	7.47	0.1347	22.06	1/982	1/7748
SNV	Breast	TARS_E444A_4	HLA-C07:02	HRNALSGAL	0.7976	0.925	0.2671	143.87	0.2328	22.06	1/982	1/7748
SNV	Breast	TARS_E444A_8	HLA-C03:04	FGVLHRNAL	0.9987	0.9902	0.4783	56.09	0.2139	22.06	1/982	1/7748
SNV	Breast	TM9SF4_S575Y_4	HLA-C03:04	FLVYGGSAF	0.9028	0.9836	0.6005	79.38	0.2505	31.18	1/982	1/7748
SNV	Breast	TMEM214_D604Y_3	HLA-B07:02	LPYSVNQL	0.9937	0.5149	0.5515	217.4	0.3286	65.84	1/982	1/7748
SNV	Breast	TMEM214_D604Y_3	HLA-C03:04	LPYSVNQLL	0.9956	0.9922	1.1683	409.84	0.4704	65.84	1/982	1/7748
SNV	Breast	UTP20_T10N_4	HLA-C07:02	HKNENTYRF	0.7927	0.869	0.6717	288	0.316	2.6	1/982	1/7748
SNV	Breast	C19orf12_T11M_6	HLA-B14:02	SHKPAMMTI	0.9939	0.6042	0.0295	105.47	0.034	11.95	1/982	1/7748
SNV	Breast	CD300A_S130T_8	HLA-A32:01	SVFPASTTM	0.9126	0.9725	0.1118	5.08	0.0262	6.71	1/982	1/7748
SNV	Breast	DLC1_C1328F_5	HLA-C05:01	FLQDFVDGL	0.9971	0.9706	0.2542	13.17	0.1037	13.3	1/982	1/7748
SNV	Breast	DLC1_C1328F_4	HLA-C05:01	LQDFVDGLF	0.9957	0.9517	0.6025	282.67	0.3313	13.3	1/982	1/7748
SNV	Breast	DLC1_C1328F_1	HLA-C05:01	FVDGLFKEV	0.9999	0.9934	0.022	2.66	0.0357	13.3	1/982	1/7748
SNV	Breast	DLC1_C1328F_1	HLA-C08:02	FVDGLFKEV	0.9998	0.9921	0.0203	83.07	0.0611	13.3	1/982	1/7748
SNV	Breast	FBXO2_P262R_6	HLA-C05:01	FTDYGRGVRF	0.9999	0.858	0.1445	26.69	0.1366	30.13	1/982	1/7748
SNV	Breast	KDM3A_S829N_6	HLA-C05:01	LADLTNGNV	0.9994	0.9797	0.0841	83.89	0.2067	23.28	1/982	1/7748
SNV	Breast	KIAA1109_S264I_6	HLA-A32:01	VMLVPIPRY	0.7863	0.9014	0.5684	102.12	0.1449	11.13	1/982	1/7748
SNV	Breast	KIAA1109_S264I_3	HLA-B14:02	VPIPRYVGL	0.9709	0.7774	0.1823	183.31	0.0521	11.13	1/982	1/7748
SNV	Breast	KIAA1109_S264I_5	HLA-C05:01	MLVPIPRYV	0.8639	0.9582	0.8991	467.29	0.3948	11.13	1/982	1/7748
SNV	Breast	PCDHB11_A695D_3	HLA-A32:01	ALDSVSSLF	0.8543	0.9678	0.7722	479.59	0.2811	14.22	1/982	1/7748
SNV	Breast	PCDHB11_A695D_3	HLA-C05:01	ALDSVSSL	1	0.9128	0.0665	353.73	0.3596	14.22	1/982	1/7748
SNV	Breast	PCDHB11_A695D_3	HLA-C05:01	ALDSVSSLF	0.9993	0.9504	0.038	1.9	0.0225	14.22	1/982	1/7748
SNV	Breast	PCDHB11_A695D_4	HLA-C05:01	VALDSVSSLF	0.9998	0.9384	0.874	93.21	0.2152	14.22	1/982	1/7748
SNV	Breast	PCDHB11_A695D_3	HLA-C05:01	ALDSVSSLFL	0.9999	0.9462	0.0803	100.8	0.2216	14.22	1/982	1/7748
SNV	Breast	PCDHB11_A695D_3	HLA-C08:02	ALDSVSSLF	0.9981	0.9861	0.0915	33.27	0.0407	14.22	1/982	1/7748
SNV	Breast	UBA7_T567P_8	HLA-B44:02	LEAGTSGPW	0.9949	0.8911	0.0436	44.61	0.2007	41.78	1/982	1/7748
SNV	Breast	AGPAT3_L322I_8	HLA-B15:17	ATILLSPIF	0.9876	0.8121	0.0638	2.38	0.1342	36.95	1/982	1/7748
SNV	Breast	AGPAT3_L322I_6	HLA-B15:17	ILLSPIFSF	0.9008	0.8017	0.4379	68.48	0.9377	36.95	1/982	1/7748
SNV	Breast	AIFM3_A559V_5	HLA-B15:17	VIAVVSMNY	0.9618	0.8048	0.696	20.23	0.5838	2.69	1/982	1/7748
SNV	Breast	AKAP8L_N96I_4	HLA-C07:01	SRIIQRLDM	0.9991	0.6531	0.0925	224.29	0.1201	20.59	1/982	1/7748
SNV	Breast	IARS2_T905N_1	HLA-B15:17	NVIEPGLLF	0.9503	0.864	0.1787	4.29	0.2498	160.35	1/982	1/7748
SNV	Breast	IARS2_T905N_1	HLA-C03:03	NVIEPGLLF	0.9813	0.99	0.3118	205.94	0.3653	160.35	1/982	1/7748
SNV	Breast	IGLV2-8_Q51E_4	HLA-B15:17	LLTEGTGSW	0.8624	0.9696	0.2626	45.54	0.7977	21.47	1/982	1/7748
SNV	Breast	IGLV2-8_Q51E_6	HLA-B15:17	LTLLTEGTGSW	0.999	0.9051	0.4835	134.5	1.1486	21.47	1/982	1/7748
SNV	Breast	ITGAX_T615A_4	HLA-B15:17	LLRARPVLW	0.8158	0.9681	0.7248	46.33	0.8035	6.06	1/982	1/7748
SNV	Breast	ITGB8_D334G_2	HLA-B15:17	IGNNINVIF	0.9588	0.656	0.8389	109.95	1.0788	2.53	1/982	1/7748
SNV	Breast	PLCB1_P221H_1	HLA-C07:01	HRPEIDNIF	0.9866	0.7025	0.2377	432.99	0.1645	3.38	1/982	1/7748
SNV	Breast	PTGS1_Q399H_5	HLA-B15:17	KVGSHEYSY	0.9676	0.9222	0.3478	4.48	0.2583	5.27	1/982	1/7748
SNV	Breast	WASF1_A462T_1	HLA-B07:02	TPGPHVPL	0.9998	0.6462	0.1998	107.49	0.2696	10.59	1/982	1/7748
SNV	Breast	WASF1_A462T_1	HLA-B07:02	TPGPHVPLM	0.9994	0.536	0.0717	18.45	0.1509	10.59	1/982	1/7748
SNV	Breast	WASF1_A462T_2	HLA-C03:03	TTPGPHVPL	0.9941	0.9935	0.129	497.12	0.5019	10.59	1/982	1/7748
SNV	Breast	WIZ_R100Q_6	HLA-B15:17	LSSHAQAHL	0.9866	0.9308	0.1416	25.53	0.6406	28.7	1/982	1/7748
SNV	Breast	WIZ_R100Q_3	HLA-B15:17	HAQAHLRDF	0.975	0.7634	0.8841	164.55	1.2218	28.7	1/982	1/7748
SNV	Breast	ZNF618_T58M_9	HLA-B15:17	LSAEQGTMM	0.9579	0.9746	0.3679	8.96	0.3918	14.35	1/982	1/7748
SNV	Breast	ZNF618_T58M_9	HLA-C03:03	LSAEQGTMM	0.9976	0.9948	0.1553	233.61	0.3826	14.35	1/982	1/7748
SNV	Breast	ALKBH5_R291W_6	HLA-A11:01	RLDAPWLETK	0.9977	0.5626	0.597	96.5	0.3095	92.95	1/982	1/7748
SNV	Breast	FAM179B_P1372S_2	HLA-C03:03	TSARAVVSL	0.9996	0.9918	0.2013	97.12	0.2714	7.54	1/982	1/7748
SNV	Breast	GPSM2_G488A_2	HLA-C05:01	IADEGFFDL	0.9998	0.9479	0.0088	1.54	0.0147	18.58	1/982	1/7748
SNV	Breast	GPSM2_G488A_2	HLA-C05:01	IADEGFFDLL	0.9999	0.9301	0.0649	17.19	0.1162	18.58	1/982	1/7748
SNV	Breast	GPSM2_G488A_2	HLA-C03:03	IADEGFFDL	0.9971	0.9929	0.1386	112.33	0.2866	18.58	1/982	1/7748
SNV	Breast	ODF2_N466I_2	HLA-C05:01	LIDRVTDLV	0.9994	0.9427	0.088	17.85	0.118	53.29	1/982	1/7748
SNV	Breast	ODF2_N466I_3	HLA-C03:03	VLIDRVTDL	0.9723	0.9769	0.4456	163.27	0.3335	53.29	1/982	1/7748
SNV	Breast	SBF2_R342Q_7	HLA-B55:01	HAFPPPQTA	0.9969	0.7835	0.0701	53.07	0.0414	3.02	1/982	1/7748
SNV	Breast	SBF2_R342Q_7	HLA-C03:03	HAFPPPQTA	0.987	0.9937	0.1085	18.84	0.1332	3.02	1/982	1/7748
SNV	Breast	SBF2_R342Q_7	HLA-C03:03	HAFPPPQTAL	0.9999	0.9942	0.0219	3.43	0.0353	3.02	1/982	1/7748
SNV	Breast	SH3TC1_E381A_5	HLA-C05:01	FLNEAEKSF	0.977	0.9668	0.5179	159.58	0.2627	1.18	1/982	1/7748
SNV	Breast	SH3TC1_E381A_5	HLA-C03:03	FLNEAEKSF	0.976	0.9931	0.5074	173.01	0.3415	1.18	1/982	1/7748
SNV	Breast	SLCO2B1_L186M_7	HLA-C05:01	YTETQHMSV	0.9999	0.9642	0.1381	19.66	0.1225	4.6	1/982	1/7748
SNV	Breast	SLCO2B1_L186M_9	HLA-C03:03	SSYTETQHM	0.9996	0.9902	0.0804	275.05	0.4059	4.6	1/982	1/7748
SNV	Breast	TTC37_R397W_4	HLA-C03:03	LAYWNKGSF	0.9917	0.9866	0.4456	64.51	0.2286	24.79	1/982	1/7748
SNV	Breast	UTRN_K2868T_8	HLA-C03:03	SAYRTAITI	0.9937	0.9869	0.0778	7.26	0.0647	5.02	1/982	1/7748
SNV	Breast	ATMIN_D796Y_9	HLA-C04:01	AMDDFLLAY	0.9525	0.7381	0.3011	267.16	0.1147	69.4	1/982	1/7748
SNV	Breast	EFR3B_F141L_5	HLA-B58:01	RSYDLFVSRF	0.9996	0.8919	0.4626	21.35	0.2102	3.7	1/982	1/7748
SNV	Breast	EFR3B_F141L_4	HLA-C04:01	SYDLFVSRF	0.9973	0.6703	0.0673	2.51	0.0066	3.7	1/982	1/7748
SNV	Breast	FANCI_K1132N_5	HLA-B53:01	QPVENAIIM	0.9303	0.8826	0.1163	49.36	0.1252	53.83	1/982	1/7748
SNV	Breast	GRAMD4_K322M_2	HLA-B58:01	EMIKNLFMW	0.9744	0.6217	0.1333	114.76	0.4118	30.61	1/982	1/7748
SNV	Breast	INPP5B_R193L_1	HLA-B53:01	LPQGAGSVL	0.9118	0.8056	0.1603	143.13	0.198	8.77	1/982	1/7748
SNV	Breast	INPP5B_R193L_1	HLA-B53:01	LPQGAGSVLF	0.9805	0.7952	0.0732	33.06	0.1025	8.77	1/982	1/7748
SNV	Breast	INPP5B_R193L_1	HLA-B53:01	LPQGAGSVLFW	0.9888	0.7139	0.1828	74.08	0.1472	8.77	1/982	1/7748
SNV	Breast	KIF4A_T187S_8	HLA-A68:02	TVLVALDSV	0.9913	0.7834	0.0855	241.78	0.3456	38.07	1/982	1/7748
SNV	Breast	NCAPD2_L1082P_5	HLA-B58:01	ATGDPAIRF	0.9475	0.9297	0.2235	29.02	0.2379	109.08	1/982	1/7748
SNV	Breast	NCAPD2_L1082P_6	HLA-B58:01	VATGDPAIRF	0.9914	0.9252	0.5605	202.98	0.4935	109.08	1/982	1/7748
SNV	Breast	NRROS_G203V_5	HLA-A68:02	GAFDVLAEL	0.7634	0.594	0.437	453.61	0.4521	7.71	1/982	1/7748
SNV	Breast	NRROS_G203V_4	HLA-C04:01	AFDVLAEL	1	0.8866	0.0077	49.06	0.0555	7.71	1/982	1/7748
SNV	Breast	PPP1R12A_E321Q_7	HLA-B58:01	KTFKNKQTL	0.9857	0.727	0.1196	15.15	0.1741	24.01	1/982	1/7748
SNV	Breast	PRF1_R479W_8	HLA-B58:01	LATGGPLW	0.9978	0.9885	0.5323	86.28	0.3734	12.64	1/982	1/7748
SNV	Breast	PRF1_R479W_9	HLA-B58:01	LLATGGPLW	0.9647	0.9887	0.0823	10.1	0.1417	12.64	1/982	1/7748
SNV	Breast	PRF1_R479W_10	HLA-B58:01	VLLATGGPLW	0.99	0.9861	0.344	266.58	0.5394	12.64	1/982	1/7748
SNV	Breast	PRF1_R479W_7	HLA-B58:01	ATGGPLWLQVW	0.9991	0.9862	0.2274	192.95	0.4863	12.64	1/982	1/7748
SNV	Breast	PRR11_N65Y_8	HLA-B58:01	LTSSWNFYF	0.9851	0.9326	0.0227	54.34	0.3127	41.77	1/982	1/7748
SNV	Breast	STXBP5_D808N_1	HLA-B58:01	NSSPSPCLW	0.9971	0.9355	0.0301	3.31	0.0616	6.86	1/982	1/7748
SNV	Breast	STXBP5_D808N_2	HLA-B58:01	TNSSPSPCLW	0.9943	0.9411	0.3275	90.56	0.3797	6.86	1/982	1/7748
SNV	Breast	STXBP5_D808N_3	HLA-B58:01	KTNSSPSPCLW	0.9996	0.9656	0.1192	24.32	0.222	6.86	1/982	1/7748
SNV	Breast	TMCO4_E78Q_3	HLA-B58:01	LSQAVLPTM	0.9834	0.9802	0.1333	288.57	0.5531	23.7	1/982	1/7748
SNV	Breast	TYW1_S103Y_8	HLA-A68:02	VLAEAVTYL	0.8717	0.776	0.6861	253.88	0.3533	32.94	1/982	1/7748
SNV	Breast	TYW1_S103Y_9	HLA-A68:02	TVLAEAVTYL	0.9765	0.7038	1.2406	26.37	0.1037	32.94	1/982	1/7748
SNV	Breast	TYW1_S103Y_8	HLA-C04:01	VLAEAVTYL	0.997	0.9428	1.1844	370.96	0.1329	32.94	1/982	1/7748
SNV	Breast	TYW1_S103Y_1	HLA-C04:01	YLDLPVAII	0.9995	0.9793	0.0594	179.19	0.0939	32.94	1/982	1/7748
SNV	Breast	USP7_D1054H_5	HLA-A68:02	YINEHEYEV	0.9946	0.533	0.5619	13.63	0.0655	69.36	1/982	1/7748
SNV	Breast	VWF_K1720N_6	HLA-B58:01	KAFISNANI	0.9896	0.584	0.3636	431.28	0.6291	52.84	1/982	1/7748
SNV	Breast	BIRC6_C2346S_1	HLA-B39:01	SHADLLLFV	0.9973	0.7983	0.0726	95.81	0.1707	40.01	1/982	1/7748
SNV	Breast	CDH23_V1857M_3	HLA-A32:01	VLMNLPMNI	0.9403	0.9721	0.1693	16.55	0.0533	1.85	1/982	1/7748
SNV	Breast	NUP205_A1967T_5	HLA-B39:01	LQADTINAF	0.7262	0.9758	0.4329	374.04	0.2811	52.3	1/982	1/7748
SNV	Breast	OXR1_E653V_5	HLA-B39:01	AREWVVVSV	0.9965	0.9291	0.2646	151.71	0.2058	29.61	1/982	1/7748
SNV	Breast	PITPNM1_E551A_5	HLA-C07:02	LRSPAGAGF	0.8043	0.9673	0.0756	24.08	0.0858	12.39	1/982	1/7748
SNV	Breast	PPM1B_M414I_8	HLA-B39:01	YRQLLEEIL	0.9977	0.8882	0.0531	12.64	0.0627	28.38	1/982	1/7748
SNV	Breast	PPM1B_M414I_8	HLA-C07:02	YRQLLEEIL	0.9751	0.889	0.2181	300.19	0.3221	28.38	1/982	1/7748
SNV	Breast	SLX4_S383T_3	HLA-A32:01	SSTPPMFSF	0.9538	0.9118	0.1556	15.05	0.0501	7.13	1/982	1/7748
SNV	Breast	SMYD3_P219H_6	HLA-A32:01	IVFNGHHLL	0.9536	0.9217	0.1209	10.15	0.0396	5.46	1/982	1/7748
SNV	Breast	SMYD3_P219H_6	HLA-C07:02	IVFNGHHLL	0.8734	0.8934	1.4435	47.89	0.1289	5.46	1/982	1/7748
SNV	Breast	SMYD3_P219H_5	HLA-C07:02	VFNGHHLLL	0.7073	0.9325	0.0606	27.23	0.0927	5.46	1/982	1/7748
SNV	Breast	TSC22D1_P617T_8	HLA-C07:02	AAPPVQTTL	0.8565	0.9865	0.3459	270.62	0.3068	105.32	1/982	1/7748
SNV	Breast	TSC22D1_P617T_8	HLA-C08:02	AAPPVQTTL	0.9747	0.9947	0.0732	261.57	0.1086	105.32	1/982	1/7748
SNV	Breast	ACP5_Q248E_2	HLA-B18:01	LEDENGVGY	0.9406	0.8627	0.0824	9.98	0.0625	32.13	1/982	1/7748
SNV	Breast	ARHGEF6_S488R_7	HLA-C12:03	SASPRMRGF	0.6191	0.9824	0.0761	9.57	0.1187	29.63	1/982	1/7748
SNV	Breast	ATP1A3_G600D_3	HLA-C05:01	SADIKVIMV	1	0.9623	0.0291	4.71	0.0539	1.35	1/982	1/7748
SNV	Breast	ATP1A3_G600D_4	HLA-C12:03	RSADIKVIM	0.9862	0.953	0.2391	7.46	0.0946	1.35	1/982	1/7748
SNV	Breast	C1orf54_E29K_8	HLA-B18:01	EERLGEDKY	0.9898	0.5743	0.0644	36.97	0.1069	10.94	1/982	1/7748
SNV	Breast	C1orf54_E29K_3	HLA-B18:01	EDKYYQVVY	0.87	0.811	0.3795	364.69	0.2395	10.94	1/982	1/7748
SNV	Breast	C9orf43_S388R_8	HLA-B38:01	DHADFHHRV	0.9914	0.8234	0.0839	212.81	0.1122	1.19	1/982	1/7748
SNV	Breast	FBXO21_M388T_2	HLA-C12:03	RTVGNLLSL	0.9972	0.987	0.0498	5.55	0.0666	31.72	1/982	1/7748
SNV	Breast	GRB2_R215Q_7	HLA-C05:01	YVTPVNQNV	0.9963	0.982	0.5674	81.18	0.204	171.84	3/982	3/7748
SNV	Breast	GRB2_R215Q_7	HLA-C05:01	YVTPVNQNV	0.9963	0.982	0.5674	81.18	0.204	171.84	3/982	3/7748
SNV	Breast	GRB2_R215Q_7	HLA-C05:01	YVTPVNQNV	0.9963	0.982	0.5674	81.18	0.204	171.84	3/982	3/7748
SNV	Breast	GRB2_R215Q_7	HLA-C12:03	YVTPVNQNV	0.9383	0.9841	0.4442	26.74	0.2542	171.84	3/982	3/7748
SNV	Breast	GRB2_R215Q_7	HLA-C12:03	YVTPVNQNV	0.9383	0.9841	0.4442	26.74	0.2542	171.84	3/982	3/7748
SNV	Breast	GRB2_R215Q_7	HLA-C12:03	YVTPVNQNV	0.9383	0.9841	0.4442	26.74	0.2542	171.84	3/982	3/7748
SNV	Breast	INTS3_K480M_1	HLA-C05:01	MLDKELRAM	0.9999	0.9303	0.0209	19.74	0.1227	24.2	1/982	1/7748
SNV	Breast	MPHOSPH9_T295I_3	HLA-C12:03	AIISWAQKL	0.9973	0.9755	0.4559	181.94	0.6974	4.2	1/982	1/7748
SNV	Breast	MRPL48_I173K_4	HLA-C05:01	FLEKIQSSL	0.9999	0.91	0.1109	8.21	0.0778	17.39	1/982	1/7748
SNV	Breast	MRPL48_I173K_4	HLA-C12:03	FLEKIQSSL	0.9957	0.9866	0.9714	476.46	1.0551	17.39	1/982	1/7748
SNV	Breast	NAP1L1_Y125F_8	HLA-B18:01	FEIINAIF	0.998	0.8353	0.1148	28.25	0.0959	102.54	1/982	1/7748
SNV	Breast	PIK3C2B_G1215D_6	HLA-B38:01	FHIDFDRFL	0.9933	0.8679	0.0085	7.23	0.0094	9.98	1/982	1/7748
SNV	Breast	PIK3C2B_G1215D_1	HLA-B38:01	DRFLGHAQM	0.9915	0.9952	0.1182	221.91	0.1153	9.98	1/982	1/7748
SNV	Breast	PLK4_D81H_2	HLA-B38:01	EHSNYVYLV	0.9969	0.8744	0.0829	292.16	0.136	13.31	1/982	1/7748
SNV	Breast	PLK4_D81H_3	HLA-B18:01	FEHSNYVY	0.9985	0.8884	0.0185	5.08	0.0366	13.31	1/982	1/7748
SNV	Breast	PLK4_D81H_3	HLA-B18:01	FEHSNYVYL	0.9887	0.8694	0.0488	60.24	0.1267	13.31	1/982	1/7748
SNV	Breast	PLK4_D81H_1	HLA-C12:03	HSNYVYLVL	0.9046	0.9818	0.4773	71.86	0.4422	13.31	1/982	1/7748
SNV	Breast	RANBP17_V571L_5	HLA-C12:03	RTSKLYARM	0.5023	0.9714	1.1775	365.18	0.9502	5.31	1/982	1/7748
SNV	Breast	RASSF5_E407D_6	HLA-B38:01	FRQKLDEAL	0.9832	0.9441	0.0609	224.96	0.1163	9.07	1/982	1/7748
SNV	Breast	SCARB1_L218F_5	HLA-B18:01	SDSGFFTVF	0.6126	0.9736	0.0984	370.89	0.2406	60.67	1/982	1/7748
SNV	Breast	SCARB1_L218F_6	HLA-C05:01	NSDSGFFTV	0.9999	0.9597	0.0454	7.24	0.0734	60.67	1/982	1/7748
SNV	Breast	SCLT1_S402L_4	HLA-B18:01	EELLALQM	0.9991	0.9561	0.1131	204.36	0.1998	9.59	1/982	1/7748
SNV	Breast	SCLT1_S402L_5	HLA-B18:01	TEELLALQM	0.9841	0.9411	0.0994	98.66	0.1509	9.59	1/982	1/7748
SNV	Breast	SCLT1_S402L_7	HLA-C05:01	RLTEELLAL	0.9991	0.9796	1.1645	247.4	0.3145	9.59	1/982	1/7748
SNV	Breast	SPTBN2_Q1205L_10	HLA-B38:01	SHTEMPGTLL	0.9936	0.9796	0.1286	141.63	0.0861	40.34	1/982	1/7748
SNV	Breast	SPTBN2_Q1205L_9	HLA-C05:01	HTEMPGTLL	0.9999	0.9878	0.1109	18.46	0.1195	40.34	1/982	1/7748
SNV	Breast	WDR48_I312V_8	HLA-C05:01	SADPPPAV	1	0.9859	0.043	148.86	0.2547	26.57	1/982	1/7748
SNV	Breast	WDR48_I312V_9	HLA-C05:01	RSADPPPAV	0.9998	0.8896	0.2356	10.69	0.0933	26.57	1/982	1/7748
SNV	Breast	WDR48_I312V_8	HLA-C05:01	SADPPPAVW	0.9986	0.9934	0.2084	13.47	0.1048	26.57	1/982	1/7748
SNV	Breast	WDR48_I312V_8	HLA-C05:01	SADPPPAVWV	0.9998	0.993	0.0649	27.88	0.1386	26.57	1/982	1/7748
SNV	Breast	WDR48_I312V_9	HLA-C12:03	RSADPPPAV	0.8948	0.9784	0.1311	9.6	0.119	26.57	1/982	1/7748
SNV	Breast	CACNA2D2_G953S_1	HLA-C05:01	SAAPRGVFV	0.993	0.9727	0.2751	237.62	0.3094	23.13	1/982	1/7748
SNV	Breast	URB1_V1009G_5	HLA-A02:01	TLEEGLVAI	0.9077	0.8	0.5751	7.81	0.1384	8.54	1/982	1/7748
SNV	Breast	URB1_V1009G_5	HLA-C05:01	TLEEGLVAI	0.9997	0.992	0.1085	12.59	0.1016	8.54	1/982	1/7748
SNV	Breast	ACACB_M1614L_9	HLA-C15:02	KIEESVRYL	0.9979	0.8505	0.3176	48.42	0.2684	8.16	1/982	1/7748
SNV	Breast	ANKS1B_E891K_4	HLA-C15:02	SVAKWLDSI	0.9973	0.8296	1.0384	229.83	0.5527	2.45	1/982	1/7748
SNV	Breast	CHI3L2_S120L_1	HLA-B14:02	LRLEFINSI	0.9976	0.6377	0.0304	373.79	0.0745	4.16	1/982	1/7748
SNV	Breast	CHI3L2_S120L_7	HLA-C15:02	MVDSSTLRL	0.9984	0.8055	0.0956	2.9	0.0137	4.16	1/982	1/7748
SNV	Breast	CHI3L2_S120L_7	HLA-C08:02	MVDSSTLRL	0.9999	0.9675	0.0101	3.64	0.0081	4.16	1/982	1/7748
SNV	Breast	CNDP2_K92N_7	HLA-C15:02	GSDPQKNTV	0.994	0.898	0.1828	102.44	0.3985	22.15	1/982	1/7748
SNV	Breast	CORO1C_I388M_7	HLA-C15:02	NADPILMSL	0.9982	0.7348	0.0269	4.78	0.0399	43.81	1/982	1/7748
SNV	Breast	CORO1C_I388M_8	HLA-C15:02	KNADPILMSL	0.9991	0.9081	0.8805	53.53	0.2836	43.81	1/982	1/7748
SNV	Breast	CORO1C_I388M_7	HLA-C08:02	NADPILMSL	0.9999	0.9404	0.0027	2.13	0.0047	43.81	1/982	1/7748
SNV	Breast	CORO1C_I388M_8	HLA-C08:02	KNADPILMSL	0.9993	0.9497	1.5585	458.04	0.1345	43.81	1/982	1/7748
SNV	Breast	CYP2A6_R361T_2	HLA-C15:02	QTFGDVIPM	0.9909	0.9356	0.268	198.67	0.52	1.1	1/982	1/7748
SNV	Breast	DNM1_R256L_6	HLA-A02:01	ALAAELKFFL	0.9927	0.5987	0.5996	261.64	0.5505	4.26	1/982	1/7748
SNV	Breast	DNM1_R256L_9	HLA-C15:02	ITAALAAEL	0.9969	0.8913	0.1055	21.88	0.1553	4.26	1/982	1/7748
SNV	Breast	DNM1_R256L_5	HLA-C15:02	LAAELKFFL	0.9987	0.9609	0.3236	101.33	0.3965	4.26	1/982	1/7748
SNV	Breast	FMNL3_E400G_1	HLA-A02:01	GLEEHVSHL	0.987	0.6128	0.4738	9.79	0.157	10.71	1/982	1/7748
SNV	Breast	FMNL3_E400G_8	HLA-C15:02	VALEKVEGL	0.9996	0.9319	0.1345	147.12	0.4626	10.71	1/982	1/7748
SNV	Breast	KANK1_A1145V_2	HLA-A33:01	EVISPDVLR	0.9348	0.5817	0.3366	53.59	0.0445	10.2	1/982	1/7748
SNV	Breast	KLHDC10_I215F_3	HLA-A02:01	AIFNGSLYV	0.9903	0.543	0.1243	1.76	0.0377	13.67	1/982	1/7748
SNV	Breast	KLHDC10_I215F_3	HLA-C15:02	AIFNGSLYV	0.9892	0.9052	0.5633	8.19	0.0723	13.67	1/982	1/7748
SNV	Breast	KLHDC10_I215F_4	HLA-C15:02	MAIFNGSLYV	0.9992	0.8836	1.4359	312.71	0.6318	13.67	1/982	1/7748
SNV	Breast	KPNA2_D79N_3	HLA-C15:02	SVNDIVKGI	0.999	0.639	0.4199	22.71	0.1595	42.88	1/982	1/7748
SNV	Breast	MYCBP2_P3039L_9	HLA-C15:02	RSSLNSQQL	0.9983	0.896	0.2003	169.89	0.4881	4.45	1/982	1/7748
SNV	Breast	NDFIP2_T68M_2	HLA-A02:01	TMSSTGVAV	0.9391	0.5258	0.2146	468.89	0.6613	8.63	1/982	1/7748
SNV	Breast	NFASC_N122K_3	HLA-B14:02	ARKKFGTAL	0.9519	0.9197	0.037	137.19	0.04	1.35	1/982	1/7748
SNV	Breast	NUP188_A983S_1	HLA-B14:02	SAIAFLHAL	0.983	0.7887	0.1799	319.31	0.0691	13.22	1/982	1/7748
SNV	Breast	NUP188_A983S_1	HLA-C15:02	SAIAFLHAL	0.9995	0.8508	0.0076	16.08	0.1247	13.22	1/982	1/7748
SNV	Breast	PRKDC_E3895K_6	HLA-C15:02	MSTSPKAFL	0.9985	0.9226	0.1737	127.35	0.4371	7.59	1/982	1/7748
SNV	Breast	PRR14L_D669N_7	HLA-C15:02	HANLPTNSL	0.9994	0.9066	0.1775	9.34	0.0815	4.69	1/982	1/7748
SNV	Breast	PRR14L_D669N_7	HLA-C08:02	HANLPTNSL	0.9943	0.9724	0.1528	125.01	0.071	4.69	1/982	1/7748
SNV	Breast	RAI1_S428L_2	HLA-A02:01	LLDLSLQSL	0.9887	0.6617	0.3735	141.79	0.4485	4.26	1/982	1/7748
SNV	Breast	RAI1_S428L_3	HLA-A02:01	LLLDLSLQSL	0.996	0.5474	0.2542	135.47	0.4407	4.26	1/982	1/7748
SNV	Breast	RAI1_S428L_2	HLA-C08:02	LLDLSLQSL	0.9999	0.9592	0.0182	81.03	0.0605	4.26	1/982	1/7748
SNV	Breast	RAPGEF6_E327K_8	HLA-C15:02	VILNGTVKI	0.991	0.7388	1.0137	60.86	0.3036	2	1/982	1/7748
SNV	Breast	SESN1_E272Q_8	HLA-A02:01	SVSDSFFQV	0.9915	0.7226	0.0314	6.91	0.1283	11.23	1/982	1/7748
SNV	Breast	SESN1_E272Q_8	HLA-C15:02	SVSDSFFQV	0.9982	0.9037	0.2893	12.05	0.096	11.23	1/982	1/7748
SNV	Breast	SIPA1L1_C949Y_6	HLA-A02:01	FVSKGYESV	0.9824	0.6007	0.1038	107.73	0.4015	7.71	1/982	1/7748
SNV	Breast	SIPA1L1_C949Y_6	HLA-C15:02	FVSKGYESV	0.9967	0.9064	0.285	138.76	0.4523	7.71	1/982	1/7748
SNV	Breast	SNRNP200_F205I_9	HLA-B51:01	ETYGVNVQI	0.6829	0.6123	0.7642	221.21	0.3208	28.88	1/982	1/7748
SNV	Breast	SNRNP200_F205I_9	HLA-C15:02	ETYGVNVQI	0.9862	0.8973	0.5427	80.26	0.354	28.88	1/982	1/7748
SNV	Breast	SOX5_S700N_3	HLA-C15:02	VSNSPEPGM	0.9899	0.8578	0.4549	255.96	0.5768	1.09	1/982	1/7748
SNV	Breast	TLN1_E1880Q_7	HLA-C15:02	KSNTSPQEL	0.9994	0.8628	0.1477	73.49	0.338	87.84	1/982	1/7748
SNV	Breast	TRABD_T65P_6	HLA-B51:01	LPRTVPQLV	0.9946	0.5194	0.0569	4.83	0.0355	9.12	1/982	1/7748
SNV	Breast	NBPF12_E40D_6	HLA-C07:01	FRNLKDRCF	0.9803	0.692	0.3413	427.6	0.1636	4.73	1/982	1/7748
SNV	Breast	NUMA1_S1834L_9	HLA-B44:03	EEPDSANSLF	0.9845	0.969	0.218	303.01	0.3696	114.7	1/982	1/7748
SNV	Breast	AEBP1_L525I_4	HLA-A24:02	IYPITWNGSL	0.9836	0.5585	0.2175	61.97	0.3891	158.86	1/982	1/7748
SNV	Breast	FANCI_M1136R_7	HLA-B44:03	VEKAIIRQL	0.9226	0.9016	0.1675	24.86	0.1694	11.95	1/982	1/7748
SNV	Breast	MTM1_N105K_5	HLA-C07:01	SRGEKSYGL	0.9768	0.5924	0.1144	264.78	0.1278	1.19	1/982	1/7748
SNV	Breast	STIP1_N126D_7	HLA-B44:03	AERKFMDPF	0.9897	0.8871	0.1475	130.67	0.3036	52.09	1/982	1/7748
SNV	Breast	TUBB4B_M415I_5	HLA-B44:03	AESNINDLV	0.5464	0.9405	0.2845	279.7	0.3633	181.97	1/982	1/7748
SNV	Breast	ANGPTL1_F394L_9	HLA-B38:01	FRLEPESEL	0.9986	0.9696	0.0839	37.72	0.038	3.96	1/982	1/7748
SNV	Breast	ANGPTL1_F394L_9	HLA-C07:01	FRLEPESEL	0.9988	0.8342	0.051	16.25	0.0326	3.96	1/982	1/7748
SNV	Breast	AP2B1_E467Q_7	HLA-C12:03	NADELLQSF	0.5282	0.983	0.3041	225.2	0.778	91.07	1/982	1/7748
SNV	Breast	C2orf42_E278D_4	HLA-A02:01	GLKDIIVPQL	0.9601	0.5177	0.7275	63.17	0.3325	14.52	1/982	1/7748
SNV	Breast	CD1E_L349F_8	HLA-C12:03	HTPSPVFFM	0.5488	0.9944	0.7398	277.7	0.8518	10.91	1/982	1/7748
SNV	Breast	CDH24_G547R_2	HLA-C07:01	VRNSSHVSF	0.9983	0.541	0.0425	15.36	0.0312	5.87	1/982	1/7748
SNV	Breast	CHD7_D2293Y_6	HLA-A02:05	YMEDGYPSV	0.996	0.7213	0.0313	2.46	0.0148	11.72	1/982	1/7748
SNV	Breast	CHD7_D2293Y_6	HLA-A02:01	YMEDGYPSV	0.9977	0.7219	0.0288	1.2	0.0115	11.72	1/982	1/7748
SNV	Breast	CHD7_D2293Y_7	HLA-A02:01	FYMEDGYPSV	0.96	0.6465	1.4274	41.79	0.2843	11.72	1/982	1/7748
SNV	Breast	CHD7_D2293Y_6	HLA-C12:03	YMEDGYPSV	0.7918	0.9918	0.9714	152.3	0.641	11.72	1/982	1/7748
SNV	Breast	CHD7_D2293Y_3	HLA-C12:03	DGYPSVAQL	0.6012	0.988	0.9805	205.61	0.7434	11.72	1/982	1/7748
SNV	Breast	CREBRF_K507N_4	HLA-A02:05	KLNNVISDL	0.9911	0.6138	0.6964	252.17	0.3805	21.62	1/982	1/7748
SNV	Breast	CREBRF_K507N_4	HLA-A02:01	KLNNVISDL	0.9836	0.7538	0.519	85.55	0.3715	21.62	1/982	1/7748
SNV	Breast	CREBRF_K507N_1	HLA-A02:01	NVISDLTPV	0.9552	0.55	0.3016	108.63	0.4029	21.62	1/982	1/7748
SNV	Breast	DMD_L1166I_3	HLA-B58:01	KDISEMHEW	0.9825	0.9694	0.273	50.71	0.3036	1.95	1/982	1/7748
SNV	Breast	DYRK1A_S54F_7	HLA-C12:03	ISDQQVFAL	0.7127	0.9378	0.4673	390.47	0.9754	46.24	1/982	1/7748
SNV	Breast	DYRK1A_S54F_1	HLA-C12:03	FALSYSDQI	0.8126	0.962	0.1064	158.99	0.6547	46.24	1/982	1/7748
SNV	Breast	EPS8_L595F_9	HLA-C12:03	IVRPPESGF	0.7818	0.9764	0.4146	35.69	0.3096	13.78	1/982	1/7748
SNV	Breast	FRY_N2933S_6	HLA-B58:01	RSLWPSDIF	0.9857	0.8424	0.1099	17.91	0.1929	3.13	1/982	1/7748
SNV	Breast	GRIPAP1_E191K_9	HLA-A02:05	VLAPMPLAKV	0.9979	0.8278	0.2809	179.23	0.3291	38.26	1/982	1/7748
SNV	Breast	GRIPAP1_E191K_9	HLA-A02:01	VLAPMPLAKV	0.9963	0.8057	0.4044	14.22	0.188	38.26	1/982	1/7748
SNV	Breast	GRIPAP1_E191K_3	HLA-B58:01	LAKVELKW	0.999	0.9858	0.4502	378.01	0.5999	38.26	1/982	1/7748
SNV	Breast	GRIPAP1_E191K_4	HLA-B58:01	PLAKVELKW	0.9076	0.9451	0.3857	173.63	0.4712	38.26	1/982	1/7748
SNV	Breast	HARS2_G436V_9	HLA-A02:05	LIAELWDSV	0.9975	0.7159	0.0313	111.06	0.2635	40.32	1/982	1/7748
SNV	Breast	HARS2_G436V_10	HLA-A02:05	KLIAELWDSV	0.9985	0.8207	0.2136	332.31	0.4283	40.32	1/982	1/7748
SNV	Breast	HARS2_G436V_6	HLA-A02:01	ELWDSVIKA	0.9265	0.5143	0.5218	24.16	0.2334	40.32	1/982	1/7748
SNV	Breast	HARS2_G436V_10	HLA-A02:01	KLIAELWDSV	0.9986	0.6712	0.2794	14.38	0.189	40.32	1/982	1/7748
SNV	Breast	HARS2_G436V_2	HLA-B58:01	SVIKAEMLY	0.9279	0.8386	0.7306	40.05	0.2737	40.32	1/982	1/7748
SNV	Breast	HMCN1_R3098Q_1	HLA-A02:05	QMITESTHV	0.9901	0.5499	0.0481	229.31	0.3662	2.04	1/982	1/7748
SNV	Breast	IL16_E1088Q_7	HLA-C12:03	ISLLSSQEL	0.9741	0.9865	0.4194	357.99	0.9427	83.02	1/982	1/7748
SNV	Breast	LYPD3_R234Q_5	HLA-C12:03	YFSPQIPPL	0.8822	0.9575	0.8094	235.29	0.7946	24.1	1/982	1/7748
SNV	Breast	LYPD3_R234Q_4	HLA-C12:03	FSPQIPPLV	0.7584	0.9855	0.3591	324.89	0.9061	24.1	1/982	1/7748
SNV	Breast	MAP3K1_E384K_4	HLA-B58:01	KNFKVESLF	0.8798	0.9236	0.273	448.3	0.6376	73.36	1/982	1/7748
SNV	Breast	METAP2_R205H_7	HLA-A02:01	KLEDCSHKL	0.9372	0.7598	0.2829	234.74	0.5329	49.53	1/982	1/7748
SNV	Breast	ORC2_R264K_1	HLA-C12:03	KAKLDQQTL	0.9567	0.9921	0.4941	249.97	0.8159	22.63	1/982	1/7748
SNV	Breast	OSBPL9_S506L_6	HLA-B38:01	HHPPILAF	0.9992	0.9018	0.099	186.78	0.1024	34.98	1/982	1/7748
SNV	Breast	OSBPL9_S506L_7	HLA-B38:01	SHHPPILAF	0.997	0.9445	0.0067	2.32	0.004	34.98	1/982	1/7748
SNV	Breast	OSBPL9_S506L_8	HLA-B58:01	VSHHPPILAF	0.9984	0.8187	0.5149	74.84	0.3547	34.98	1/982	1/7748
SNV	Breast	OSBPL9_S506L_7	HLA-C07:01	SHHPPILAF	0.9046	0.5462	0.0456	60.35	0.0715	34.98	1/982	1/7748
SNV	Breast	OSBPL9_S506L_8	HLA-C12:03	VSHHPPILAF	0.9993	0.9513	0.3701	434.08	1.0168	34.98	1/982	1/7748
SNV	Breast	PGR_E833K_1	HLA-B58:01	KGLRSQTQF	0.9458	0.8642	0.6388	499.5	0.6616	3.88	1/982	1/7748
SNV	Breast	PIK3CB_E1014K_8	HLA-A02:05	MLTAGLPKL	0.9871	0.6592	0.0648	27.53	0.144	14.74	1/982	1/7748
SNV	Breast	PIK3CB_E1014K_8	HLA-A02:01	MLTAGLPKL	0.9846	0.5695	0.0703	4.69	0.0995	14.74	1/982	1/7748
SNV	Breast	PIK3CB_E1014K_5	HLA-C12:03	AGLPKLTSV	0.9773	0.9819	0.9886	277.24	0.8513	14.74	1/982	1/7748
SNV	Breast	PMPCB_P434A_5	HLA-C07:01	NRRIAIPEL	0.9961	0.6133	0.1315	187.86	0.1135	52.05	1/982	1/7748
SNV	Breast	POGZ_M745I_6	HLA-C12:03	RAVRKISVM	0.9834	0.9794	0.1244	7.64	0.0965	43.49	1/982	1/7748
SNV	Breast	PRKD3_E580Q_7	HLA-A02:05	YQIFADQVL	0.9048	0.6175	1.3495	67.27	0.2132	26.21	1/982	1/7748
SNV	Breast	PRKD3_E580Q_7	HLA-B38:01	YQIFADQVL	0.8728	0.9897	0.1154	77.77	0.0594	26.21	1/982	1/7748
SNV	Breast	PROS1_R355C_3	HLA-A02:01	ALCGGKIEV	0.9866	0.7368	0.4301	33.21	0.2619	13.98	1/982	2/7748
SNV	Breast	RSBN1_L398F_10	HLA-B38:01	ERFSEEFLAF	0.9906	0.9555	0.3446	432.32	0.1661	25.21	1/982	1/7748
SNV	Breast	SF3B1_E802Q_1	HLA-C12:03	QANYIKTEI	0.9697	0.9918	1.2216	338.18	0.9212	273.75	1/982	1/7748
SNV	Breast	SIPA1L2_E82Q_8	HLA-B58:01	GVRARVSQW	0.936	0.9054	0.6893	210.47	0.4987	8.91	1/982	1/7748
SNV	Breast	SNRNP48_L156V_1	HLA-C12:03	VTQADRLAL	0.9952	0.9857	0.4284	187.4	0.7081	12.46	1/982	1/7748
SNV	Breast	TTN_A24530T_8	HLA-C12:03	IAKNAAGTI	0.8276	0.9703	0.3644	67.72	0.4283	1.8	1/982	1/7748
SNV	Breast	ULK4_I27M_3	HLA-C12:03	GTMNFVAIL	0.9404	0.9613	1.1985	101.76	0.5268	2.67	1/982	1/7748
SNV	Breast	ZNF644_H782D_6	HLA-B58:01	SSSNSDNNF	0.8189	0.6713	0.4705	335.78	0.5794	27.84	1/982	1/7748
SNV	Breast	ATRX_S34F_3	HLA-C02:02	TSFPPRLAM	0.8988	0.9753	0.0166	20.89	0.0487	22.82	1/982	1/7748
SNV	Breast	BCL3_V155F_4	HLA-B27:05	HRLFNLFQQ	0.9975	0.8576	0.729	215.01	0.4926	61.84	1/982	1/7748
SNV	Breast	DCTN4_K215T_2	HLA-C02:02	ITIEPAQAV	0.8676	0.9731	0.1174	58.58	0.1178	72.04	1/982	1/7748
SNV	Breast	DSP_D919V_9	HLA-A02:01	SLESMKFGV	0.9525	0.6727	0.4681	480.12	0.6665	116.58	1/982	1/7748
SNV	Breast	FERMT1_S253P_4	HLA-C02:02	WLDPSRSLM	0.9712	0.9835	0.7634	64.34	0.1255	2.14	1/982	1/7748
SNV	Breast	GRAMD1C_I145F_7	HLA-A02:01	RLIPNAFQI	0.9959	0.745	0.069	1.75	0.0374	5.66	1/982	1/7748
SNV	Breast	GRAMD1C_I145F_7	HLA-A02:01	RLIPNAFQIV	0.9969	0.7924	0.4074	36.1	0.27	5.66	1/982	1/7748
SNV	Breast	GRAMD1C_I145F_8	HLA-B27:02	ARLIPNAF	0.9999	0.6083	0.5721	32.61	0.2912	5.66	1/982	1/7748
SNV	Breast	GRAMD1C_I145F_8	HLA-B27:02	ARLIPNAFQI	0.9999	0.6105	0.2405	9.46	0.1977	5.66	1/982	1/7748
SNV	Breast	GRAMD1C_I145F_8	HLA-B27:05	ARLIPNAF	0.9999	0.8836	1.0445	41.7	0.314	5.66	1/982	1/7748
SNV	Breast	GRAMD1C_I145F_8	HLA-B27:05	ARLIPNAFQI	0.9999	0.9006	0.2085	8.38	0.1796	5.66	1/982	1/7748
SNV	Breast	GRAMD1C_I145F_7	HLA-C02:02	RLIPNAFQI	0.6859	0.9808	1.724	77.72	0.1379	5.66	1/982	1/7748
SNV	Breast	MECP2_A443P_3	HLA-A03:01	ATPATAAEK	0.9565	0.586	0.4351	325.57	0.4337	12.08	1/982	1/7748
SNV	Breast	MECP2_A443P_5	HLA-A03:01	AVATPATAAEK	0.9988	0.6405	0.476	127.3	0.3044	12.08	1/982	1/7748
SNV	Breast	PRSS36_G253S_1	HLA-B27:05	SRWFQAGITSF	1	0.6003	0.0043	1.47	0.0336	1.65	1/982	1/7748
SNV	Breast	THNSL2_F84S_1	HLA-B27:02	SRHREVVHL	0.9997	0.7029	0.1135	41.23	0.3121	23.87	1/982	1/7748
SNV	Breast	THNSL2_F84S_1	HLA-B27:05	SRHREVVHL	0.9996	0.9155	0.2085	17.2	0.2365	23.87	1/982	1/7748
SNV	Breast	TP53_H193L_7	HLA-A02:01	GLAPPQLLI	0.9923	0.6173	0.5286	7.46	0.1346	82.91	1/982	2/7748
SNV	Breast	TP53_H193L_7	HLA-A02:01	GLAPPQLLIRV	0.9986	0.6523	0.861	53.58	0.3113	82.91	1/982	2/7748
SNV	Breast	TP53_H193L_1	HLA-A02:01	LLIRVEGNLRV	0.902	0.5375	1.3365	142.79	0.4497	82.91	1/982	2/7748
SNV	Breast	USP35_V761I_4	HLA-B27:02	SRSILDLVNY	0.9999	0.5505	0.1373	1.93	0.0793	4.02	1/982	1/7748
SNV	Breast	USP35_V761I_4	HLA-B27:05	SRSILDLVNY	0.9999	0.8872	0.1389	5.53	0.1495	4.02	1/982	1/7748
SNV	Breast	USP35_V761I_4	HLA-B27:05	SRSILDLVNYF	1	0.8713	0.2829	5.33	0.1467	4.02	1/982	1/7748
SNV	Breast	USP9X_T1053M_9	HLA-A02:01	KLMPPDSTM	0.978	0.7394	0.5409	18.56	0.2111	69.09	1/982	1/7748
SNV	Breast	USP9X_T1053M_2	HLA-A02:01	TMIEKLRAI	0.987	0.5395	0.4195	73.39	0.3517	69.09	1/982	1/7748
SNV	Breast	USP9X_T1053M_9	HLA-A02:01	KLMPPDSTMI	0.9931	0.6234	0.6069	98.93	0.3901	69.09	1/982	1/7748
SNV	Breast	USP9X_T1053M_9	HLA-C02:02	KLMPPDSTM	0.8926	0.9805	0.244	28.98	0.0652	69.09	1/982	1/7748
SNV	Breast	WIPI1_G313R_7	HLA-B27:05	ARLNFSRQR	0.9993	0.5619	0.1914	19.83	0.2471	44.21	1/982	1/7748
SNV	Breast	ZNF208_K379R_2	HLA-B27:02	YRWPSTLSY	0.9995	0.617	0	1.03	0.0026	3.3	1/982	1/7748
SNV	Breast	ZNF208_K379R_2	HLA-B27:05	YRWPSTLSY	0.9995	0.8584	0	1.04	0.0029	3.3	1/982	1/7748
SNV	Breast	ZNF208_K379R_2	HLA-B27:05	YRWPSTLSYH	0.9998	0.7939	1.0063	3.97	0.1244	3.3	1/982	1/7748
SNV	Breast	ZNF208_K379R_2	HLA-B27:05	YRWPSTLSYHK	0.9999	0.7751	0.1824	17.34	0.2371	3.3	1/982	1/7748
SNV	Breast	ZNF208_K379R_4	HLA-C02:02	KAYRWPSTL	0.9713	0.9852	0.0126	36.89	0.0824	3.3	1/982	1/7748
SNV	Breast	ZNF208_K379R_2	HLA-C02:02	YRWPSTLSY	0.5817	0.988	1.382	71.84	0.1327	3.3	1/982	1/7748
SNV	Breast	ZNF229_L587F_6	HLA-B27:05	RRNSDFHSH	0.9987	0.8305	0.2732	337.15	0.5499	2.48	1/982	1/7748
SNV	Breast	DNAH5_S1579L_3	HLA-C03:03	STLEIIANM	0.9977	0.9859	0.422	162.21	0.3326	5.1	1/982	1/7748
SNV	Breast	DSE_D600H_4	HLA-A68:02	TVVHGVHGA	0.9782	0.5804	0.042	34.53	0.122	13.37	1/982	1/7748
SNV	Breast	DSE_D600H_3	HLA-B15:01	VVHGVHGAF	0.9937	0.9364	0.062	21.77	0.1473	13.37	1/982	1/7748
SNV	Breast	HERC1_R4781Q_9	HLA-C07:01	MRFVSGRSQL	0.9986	0.5836	0.073	444.76	0.1664	8.29	1/982	1/7748
SNV	Breast	LYST_V273I_1	HLA-C03:03	ITLNHNSPL	0.9974	0.9808	0.0907	190	0.3543	9.56	1/982	1/7748
SNV	Breast	PEX19_K155E_4	HLA-A68:02	ELTEAMEGL	0.8598	0.8049	0.9444	198.25	0.3144	60.12	1/982	1/7748
SNV	Breast	TIGD2_L245I_5	HLA-B15:01	DLSNIPVTY	0.8742	0.8036	0.6599	159.49	0.3418	10.44	1/982	1/7748
SNV	Breast	TIGD2_L245I_4	HLA-B15:01	LSNIPVTYY	0.9967	0.8318	0.3175	162.08	0.3439	10.44	1/982	1/7748
SNV	Breast	ZMAT1_D306H_7	HLA-C07:01	TYDSFQHEL	0.9791	0.7108	0.1215	487.09	0.1727	9.02	1/982	1/7748
SNV	Breast	ASUN_I384V_9	HLA-B15:01	MLSSHGGEVF	0.9994	0.9822	0.1529	196.23	0.3689	28.43	1/982	1/7748
SNV	Breast	ASUN_I384V_7	HLA-C12:03	SSHGGEVFL	0.8791	0.994	0.1151	245.82	0.8101	28.43	1/982	1/7748
SNV	Breast	EDN1_V186D_6	HLA-B15:01	TMRNSDKSSF	0.999	0.7951	0.3566	63.71	0.2441	18.78	1/982	1/7748
SNV	Breast	EPHX1_P143S_6	HLA-B38:01	GHTPKSLLM	0.99	0.9424	0.1555	314.31	0.1415	280.4	1/982	1/7748
SNV	Breast	FBLIM1_A261P_8	HLA-B15:01	IIRALGQPF	0.999	0.7314	0.0609	61.43	0.2401	64.38	1/982	1/7748
SNV	Breast	FBLIM1_A261P_8	HLA-C12:03	IIRALGQPF	0.9451	0.9817	0.7927	399.02	0.9836	64.38	1/982	1/7748
SNV	Breast	PEX2_V302I_6	HLA-B38:01	IEMSEINAL	0.7189	0.9346	0.2491	364.19	0.1527	47.41	3/982	3/7748
SNV	Breast	PEX2_V302I_6	HLA-B38:01	IEMSEINAL	0.7189	0.9346	0.2491	364.19	0.1527	47.41	3/982	3/7748
SNV	Breast	PEX2_V302I_6	HLA-B38:01	IEMSEINAL	0.7189	0.9346	0.2491	364.19	0.1527	47.41	3/982	3/7748
SNV	Breast	PIK3CA_E453K_3	HLA-A02:01	GLKDLLNPI	0.9672	0.5423	0.5138	157.89	0.4669	19.54	5/982	6/7748
SNV	Breast	B3GNT9_C219Y_2	HLA-C07:02	FYPDVRFVF	0.8874	0.8828	0.0249	5.32	0.0201	17.72	1/982	1/7748
SNV	Breast	B3GNT9_C219Y_3	HLA-C07:02	AFYPDVRFVF	0.992	0.9429	0.5371	280.41	0.3121	17.72	1/982	1/7748
SNV	Breast	SLC13A2_L335I_9	HLA-C05:01	FAEKAISII	0.9999	0.9705	0.1271	131.92	0.2435	2.69	1/982	1/7748
SNV	Breast	UBE2Z_M128V_9	HLA-C05:01	FVVPDTVDV	0.8664	0.9492	0.874	333.23	0.3521	278.14	1/982	1/7748
SNV	Breast	FMNL3_Y58S_3	HLA-B57:01	RQSDNEKKW	0.9455	0.9643	0.4301	110.29	0.2897	7.78	1/982	1/7748
SNV	Breast	ITGA5_E958V_1	HLA-C16:01	VAVYKALKM	0.8696	0.9747	0.0583	27.74	0.2017	12.88	1/982	1/7748
SNV	Breast	MPPE1_E318Q_1	HLA-B57:01	QLSVPSFSW	0.9108	0.9939	0.103	111.26	0.2903	10.35	1/982	1/7748
SNV	Breast	PRICKLE2_D368N_3	HLA-C16:01	SANVDPLSL	0.9565	0.9873	0.1394	8.27	0.0841	7.68	1/982	1/7748
SNV	Breast	PRICKLE2_D368N_1	HLA-C16:01	NVDPLSLQM	0.9611	0.9494	0.2372	103.51	0.4324	7.68	1/982	1/7748
SNV	Breast	PTAR1_L302R_7	HLA-B44:03	VEFSTDRIDSY	0.9986	0.767	0.1198	71.18	0.2582	15.93	1/982	1/7748
SNV	Breast	PTGER2_C13R_5	HLA-B57:01	QSEDRETRQW	0.9992	0.9631	0.3734	313.09	0.428	1.13	1/982	1/7748
SNV	Breast	PTGER2_C13R_4	HLA-B44:03	SEDRETRQW	0.9997	0.8915	0.062	1.63	0.0278	1.13	1/982	1/7748
SNV	Breast	PTGER2_C13R_5	HLA-B44:03	QSEDRETRQW	0.9003	0.9513	1.8766	19.88	0.1579	1.13	1/982	1/7748
SNV	Breast	CASP8AP2_K560R_3	HLA-A02:01	FMRKLNLTL	0.9543	0.5987	0.288	491.6	0.6717	8.13	1/982	1/7748
SNV	Breast	CASP8AP2_K560R_3	HLA-B08:01	FMRKLNLTL	0.9984	0.8118	0	56.69	0.1258	8.13	1/982	1/7748
SNV	Breast	CPT1C_D322Y_9	HLA-C07:01	TRIPGVQKY	0.9985	0.519	0.0067	8	0.0142	1.36	1/982	1/7748
SNV	Breast	HEATR6_L162P_6	HLA-A02:01	YLPELPGNTGL	0.9899	0.6903	0.8095	12.34	0.1755	19.06	1/982	1/7748
SNV	Breast	NCF4_T327M_2	HLA-A02:01	IMQKDNYRV	0.9828	0.5956	0.1668	22.98	0.2292	24.07	1/982	2/7748
SNV	Breast	STK32B_G158R_7	HLA-A02:01	ILLDEHRHV	0.9968	0.7897	0.2256	5.04	0.1048	15.91	1/982	1/7748
SNV	Breast	STK32B_G158R_6	HLA-C05:01	LLDEHRHVHI	0.9997	0.8353	0.0781	309.63	0.3428	15.91	1/982	1/7748
SNV	Breast	ACTA2_R185Q_7	HLA-C05:01	RLDLAGQDL	0.9998	0.9835	0.0861	6.78	0.071	610.39	1/982	1/7748
SNV	Breast	ADAMTS5_A314P_3	HLA-A02:11	RLPVVKVVV	0.9261	0.7336	0.9521	146.9	1.0296	6.01	1/982	1/7748
SNV	Breast	BRPF3_F675V_2	HLA-C15:02	IVHRAAVRL	0.9635	0.8962	0.5717	65.28	0.3164	29.72	1/982	1/7748
SNV	Breast	DOCK7_S1383I_8	HLA-C15:02	KVFERMNIL	0.9983	0.8476	0.1703	3.44	0.0208	14.07	1/982	1/7748
SNV	Breast	FBXO27_Q213R_7	HLA-A02:11	QLLDANRTV	0.9866	0.7807	0.2355	2.9	0.202	4.93	1/982	1/7748
SNV	Breast	FBXO27_Q213R_6	HLA-A02:11	LLDANRTVL	0.8792	0.7661	1.0964	41.39	0.7156	4.93	1/982	1/7748
SNV	Breast	FBXO27_Q213R_6	HLA-C05:01	LLDANRTVL	0.9999	0.9509	0.0209	2.48	0.0332	4.93	1/982	1/7748
SNV	Breast	FBXO27_Q213R_6	HLA-C15:02	LLDANRTVL	0.9894	0.8715	0.4774	62.08	0.3072	4.93	1/982	1/7748
SNV	Breast	GBE1_S202C_5	HLA-C15:02	RIYECHVGI	0.9969	0.7316	0.7556	117.9	0.4234	18.1	1/982	1/7748
SNV	Breast	PRKDC_K2359T_6	HLA-C15:02	NTMEDTFIV	0.9963	0.8766	0.6993	231.04	0.5539	31.64	1/982	1/7748
SNV	Breast	TBL2_Q220L_9	HLA-A02:11	VLIWSLKGL	0.869	0.5117	0.3137	60.88	0.8038	38.26	1/982	1/7748
SNV	Breast	TTLL4_R1008Q_8	HLA-A02:11	VLTPDDVQI	0.9631	0.6423	0.7271	12.79	0.4632	8.5	1/982	1/7748
SNV	Breast	TTLL4_R1008Q_8	HLA-A02:11	VLTPDDVQILV	0.9921	0.6833	1.8089	54.63	0.7788	8.5	1/982	1/7748
SNV	Breast	TTLL4_R1008Q_8	HLA-C05:01	VLTPDDVQI	0.9747	0.9847	0.7219	464.47	0.3941	8.5	1/982	1/7748
SNV	Breast	TTLL4_R1008Q_6	HLA-C05:01	TPDDVQILV	0.9966	0.9819	0.1829	54.53	0.1756	8.5	1/982	1/7748
SNV	Breast	TTLL4_R1008Q_7	HLA-C05:01	LTPDDVQILV	0.9993	0.985	0.377	457.08	0.392	8.5	1/982	1/7748
SNV	Breast	BID_R168H_4	HLA-A02:01	SLLHDVFHT	0.95	0.682	0.1038	38.76	0.277	39.76	1/982	1/7748
SNV	Breast	BID_R168H_3	HLA-A02:01	LLHDVFHTT	0.9597	0.7253	0.0602	107.96	0.4018	39.76	1/982	1/7748
SNV	Breast	BID_R168H_3	HLA-A02:01	LLHDVFHTTV	0.9954	0.8683	0.2298	185.07	0.494	39.76	1/982	1/7748
SNV	Breast	BID_R168H_4	HLA-A02:01	SLLHDVFHTTV	0.9986	0.8271	0.8325	112.57	0.409	39.76	1/982	1/7748
SNV	Breast	C4orf36_G54D_5	HLA-C03:04	ISFGDSVQL	0.9998	0.9824	0.0717	5.79	0.0555	3.14	1/982	1/7748
SNV	Breast	CACNA2D3_R549L_9	HLA-A02:01	LLYEEGKKL	0.9779	0.7519	0.7719	41.63	0.2839	1.06	1/982	1/7748
SNV	Breast	CACNA2D3_R549L_9	HLA-C03:04	LLYEEGKKL	0.9385	0.9859	0.8274	351.28	0.4455	1.06	1/982	1/7748
SNV	Breast	DLC1_A102D_4	HLA-A02:01	SLEDSTETL	0.8382	0.8553	0.6596	48.61	0.2991	3.71	1/982	1/7748
SNV	Breast	DLC1_A102D_6	HLA-A02:01	FLSLEDSTETL	0.9707	0.7685	1.3233	123.35	0.4246	3.71	1/982	1/7748
SNV	Breast	DLC1_A102D_4	HLA-C08:02	SLEDSTETL	0.9997	0.9774	0.0249	78.93	0.0599	3.71	1/982	1/7748
SNV	Breast	EPHB4_V406I_5	HLA-C03:04	YTFEITAL	0.9999	0.9847	0.2189	27.42	0.1604	92.87	1/982	1/7748
SNV	Breast	EXT2_D547E_2	HLA-B40:01	SEELQFGYEV	0.9681	0.6165	0.5303	168.6	0.5157	174.29	1/982	1/7748
SNV	Breast	EXT2_D547E_7	HLA-C03:04	IIMLTSEEL	0.9961	0.9924	0.6864	217.11	0.3726	174.29	1/982	1/7748
SNV	Breast	FANCG_L156V_9	HLA-A02:01	ALWLSADRV	0.9774	0.7076	0.4415	32.66	0.2603	59.42	1/982	1/7748
SNV	Breast	FANCG_L156V_3	HLA-B14:02	DRVGDLALL	0.9974	0.8912	0.1885	288.42	0.0662	59.42	1/982	1/7748
SNV	Breast	HMGXB3_V1200L_1	HLA-C03:04	LIAPFFPPL	0.9985	0.9888	0.2379	467.98	0.4919	33.74	1/982	1/7748
SNV	Breast	LMAN2_H53Y_8	HLA-C08:02	ITDGNSEYL	0.9997	0.9223	0.0066	12.47	0.0224	345.99	1/982	1/7748
SNV	Breast	MED13_S650R_3	HLA-B40:01	QERVTSVTEL	0.9646	0.5092	0.1839	10.9	0.2523	44.43	1/982	1/7748
SNV	Breast	MED13_S650R_2	HLA-B14:02	ERVTSVTEL	0.999	0.8668	0.0626	42.7	0.0182	44.43	1/982	1/7748
SNV	Breast	MUC16_T10537M_9	HLA-C03:04	YVFPDVPEM	0.9997	0.9907	0.0031	1.29	0.0058	4.01	1/982	1/7748
SNV	Breast	MUC16_T10537M_1	HLA-C03:04	MTSSLATSL	0.9994	0.993	0.0362	41.44	0.1875	4.01	1/982	1/7748
SNV	Breast	MUC16_T10537M_9	HLA-C08:02	YVFPDVPEM	0.7612	0.9519	0.1934	27.77	0.0372	4.01	1/982	1/7748
SNV	Breast	MYBL2_S616Y_6	HLA-C03:04	TAPSNYSSL	0.9986	0.9843	0.0752	183.86	0.3498	56.21	1/982	1/7748
SNV	Breast	RNPC3_G51R_2	HLA-B14:02	FRAQSVRVL	0.9982	0.6013	0.0384	54.75	0.0214	4.4	1/982	1/7748
SNV	Breast	RPTOR_T401S_7	HLA-C03:04	TIIEEGSAF	0.9956	0.993	0.3596	184.63	0.3504	10.76	1/982	1/7748
SNV	Breast	RPTOR_T401S_1	HLA-C03:04	SAFRHSPFF	0.9785	0.986	0.1535	67.34	0.2332	10.76	1/982	1/7748
SNV	Breast	RUNDC1_R219L_7	HLA-C03:04	VVLERQLVI	0.9684	0.9735	0.7585	420.41	0.4746	55.26	1/982	1/7748
SNV	Breast	SLC30A1_S33L_5	HLA-B14:02	SRVTLSLAM	0.9966	0.6368	0.0656	314.55	0.0686	20.83	1/982	1/7748
SNV	Breast	SLC30A1_S33L_7	HLA-C03:04	VVSRVTLSL	0.9988	0.994	0.2163	91.09	0.2648	20.83	1/982	1/7748
SNV	Breast	ACE_E923G_1	HLA-C05:01	GADDFFTSL	0.9999	0.9722	0.0021	1.5	0.0139	34.04	1/982	1/7748
SNV	Breast	ACE_E923G_2	HLA-C05:01	KGADDFFTSL	0.9996	0.976	1.8729	61.32	0.1838	34.04	1/982	1/7748
SNV	Breast	ACIN1_R850H_2	HLA-B39:06	RHWGASTAT	0.9665	0.8516	0.0979	499.35	0.3645	63.08	1/982	1/7748
SNV	Breast	ACOX2_A595T_5	HLA-A02:01	FLHDTFLSGA	0.9941	0.5975	0.2054	341.97	0.5939	1.15	1/982	1/7748
SNV	Breast	AFF1_T982M_2	HLA-C05:01	MMDRVGKAF	0.9991	0.9569	0.0897	19.72	0.1226	48.59	1/982	1/7748
SNV	Breast	AHNAK_M2709V_2	HLA-C05:01	SVPDIDLNL	0.9869	0.9441	0.294	273.73	0.3272	106.3	1/982	1/7748
SNV	Breast	AHNAK_N547S_9	HLA-B39:06	SRVDIETPSL	0.9988	0.7635	0.3559	45.24	0.137	106.3	1/982	1/7748
SNV	Breast	AHNAK_N547S_8	HLA-C05:01	RVDIETPSL	1	0.9524	0.0246	1.73	0.0191	106.3	1/982	1/7748
SNV	Breast	AMER1_S1002P_4	HLA-C05:01	MTMPISLSV	0.9964	0.9321	0.8678	23.17	0.1301	14.75	1/982	1/7748
SNV	Breast	ANGEL2_R316M_1	HLA-B39:06	MRGDIKLTQL	0.9963	0.9598	0.5952	361.57	0.3211	22.68	1/982	1/7748
SNV	Breast	ANKRD12_D1818A_7	HLA-A02:01	SLAAIVASL	0.98	0.64	0.0948	2.25	0.0511	17.62	1/982	1/7748
SNV	Breast	ANKRD26_I1626V_3	HLA-A02:01	KLVPRENLV	0.9611	0.7144	0.4602	67.88	0.3417	7.11	1/982	1/7748
SNV	Breast	ANPEP_A391S_1	HLA-B39:06	SHQWFGNLV	0.9938	0.9212	0.0206	10.25	0.064	5.95	1/982	1/7748
SNV	Breast	ANPEP_R86W_8	HLA-A02:01	TLKPDSYWV	0.9413	0.7546	0.2609	162.64	0.4719	5.95	1/982	1/7748
SNV	Breast	ANPEP_R86W_6	HLA-C05:01	KPDSYWVTL	0.997	0.8998	0.3299	123.36	0.238	5.95	1/982	1/7748
SNV	Breast	APC2_R464S_3	HLA-B39:06	LRSYAGMTL	0.9866	0.9506	0.4974	8.04	0.057	2.77	1/982	1/7748
SNV	Breast	ARHGEF2_A889T_1	HLA-C05:01	TGDALYLSF	0.9997	0.8311	0.2495	443.01	0.3881	115.43	1/982	1/7748
SNV	Breast	ATG9A_Q284R_7	HLA-B39:06	QRLELARRL	0.9958	0.7357	1.0128	405.65	0.3366	30.82	1/982	1/7748
SNV	Breast	ATP2C1_L86P_8	HLA-B39:06	FKNPLIMPL	0.9985	0.6772	0.2754	25.45	0.1063	71.95	1/982	1/7748
SNV	Breast	ATXN3_D225A_5	HLA-A02:01	MLDEAEEDL	0.9633	0.7512	0.6693	20.28	0.2185	3.14	1/982	1/7748
SNV	Breast	ATXN3_D225A_6	HLA-A02:01	GMLDEAEEDL	0.9506	0.5305	0.8958	207.07	0.5126	3.14	1/982	1/7748
SNV	Breast	ATXN3_D225A_5	HLA-C05:01	MLDEAEEDL	0.9994	0.9245	0.0234	5.41	0.0605	3.14	1/982	1/7748
SNV	Breast	BRD1_A476T_3	HLA-B39:06	ERTHSYWLL	0.9971	0.6581	0.5654	496.2	0.3637	33.01	1/982	1/7748
SNV	Breast	C2CD2L_A670T_8	HLA-B39:06	SHDDLSNTT	0.886	0.6298	0.3211	53.39	0.1496	12.33	1/982	1/7748
SNV	Breast	C9orf3_A296T_7	HLA-A02:01	AMSTWQTTV	0.9951	0.5656	0.0408	43.39	0.288	4.91	1/982	1/7748
SNV	Breast	CAMSAP1_A103T_9	HLA-A02:01	ILKGDQVATL	0.899	0.6073	1.2919	276.69	0.5595	27.1	1/982	1/7748
SNV	Breast	CANT1_R314H_2	HLA-B39:06	EHKGANLLL	0.9846	0.7145	0.1885	5.94	0.0475	48.59	1/982	1/7748
SNV	Breast	CAPN15_R530G_5	HLA-B39:06	FRDHGATWSV	0.9992	0.9469	0.3469	354.99	0.3186	28.98	1/982	1/7748
SNV	Breast	CASK_A283T_6	HLA-B39:06	ERDRYTYKI	0.9887	0.5093	0.7551	182.59	0.2474	30.65	1/982	1/7748
SNV	Breast	CASK_A283T_4	HLA-B39:06	DRYTYKIHL	0.9953	0.5247	0.1219	16.18	0.0826	30.65	1/982	1/7748
SNV	Breast	CDH1_A817V_8	HLA-C05:01	FIDENLKV	1	0.9588	0.0299	25.88	0.1352	226.39	1/982	1/7748
SNV	Breast	CDH1_A817V_8	HLA-C05:01	FIDENLKVA	0.9999	0.9544	0.1741	139.77	0.2482	226.39	1/982	1/7748
SNV	Breast	CNOT6_C410Y_3	HLA-A02:01	VLYADLNSL	0.9845	0.5313	0.1371	2.85	0.0617	45	1/982	1/7748
SNV	Breast	COL14A1_T636M_1	HLA-C05:01	MTDSFRVTW	0.9902	0.9076	0.7431	96.1	0.2177	5.68	1/982	2/7748
SNV	Breast	COQ10B_E162D_7	HLA-A02:01	RLFNHLDTI	0.9924	0.5534	0.0861	3.11	0.0684	62.73	1/982	1/7748
SNV	Breast	COQ10B_E162D_4	HLA-B39:06	NHLDTIWRF	0.9805	0.7141	0.631	15.21	0.0792	62.73	1/982	1/7748
SNV	Breast	CPQ_M443V_9	HLA-B39:06	SHGDTMTVV	0.9979	0.7463	0.0304	5.69	0.0457	39.13	1/982	1/7748
SNV	Breast	CPQ_M443V_2	HLA-C05:01	VVDPKQMNV	0.9999	0.971	0.0071	1.55	0.0148	39.13	1/982	1/7748
SNV	Breast	CRNKL1_R705W_5	HLA-A02:01	RLLQWTQHV	0.9975	0.5526	0.0109	3	0.0658	41.12	1/982	1/7748
SNV	Breast	CTSL_V242M_2	HLA-A02:01	TMGPISVAI	0.9863	0.76	0.3277	48.5	0.2988	481.86	1/982	1/7748
SNV	Breast	CTU2_R305W_11	HLA-B44:02	DERHGDVVVVW	0.9986	0.5843	0.1105	183.64	0.3149	17.55	1/982	1/7748
SNV	Breast	CXCL2_L6F_5	HLA-C05:01	SAAPSNPRL	0.9787	0.9428	0.3154	149.78	0.2554	2.28	1/982	1/7748
SNV	Breast	DCAF11_W219R_6	HLA-B39:06	ARDVGRSVL	0.9963	0.9121	0.8176	84.42	0.1812	56.74	1/982	1/7748
SNV	Breast	DECR1_F57L_2	HLA-A02:01	SLQGKVAFI	0.9708	0.5298	0.3101	51.31	0.3057	80.01	1/982	1/7748
SNV	Breast	DNAH17_T2194A_1	HLA-B39:06	AHDGPKWII	0.9933	0.735	0.3603	20.77	0.0966	1.19	1/982	1/7748
SNV	Breast	DNAH17_T2194A_1	HLA-B39:06	AHDGPKWIIL	0.9912	0.6495	0.5527	92.78	0.1878	1.19	1/982	1/7748
SNV	Breast	DNAH1_S103G_3	HLA-A02:01	ILGPGTLDQL	0.9687	0.5198	0.7786	226.41	0.527	5.35	1/982	1/7748
SNV	Breast	DNAH1_S103G_6	HLA-C05:01	YSDILGPGTL	0.9999	0.8432	0.047	21.68	0.127	5.35	1/982	1/7748
SNV	Breast	DYSF_V794I_6	HLA-C05:01	SLPDIIIWM	0.7352	0.8395	0.4467	66.82	0.1898	40.11	1/982	1/7748
SNV	Breast	DZANK1_V188A_3	HLA-B39:06	AHASGQKCL	0.9865	0.7513	0.6086	429.87	0.3444	4.19	1/982	1/7748
SNV	Breast	EPHB3_P995S_9	HLA-A02:01	RLQMNQTLSV	0.991	0.6264	0.9749	180.21	0.4895	107.81	1/982	1/7748
SNV	Breast	ERCC6L_T1048A_7	HLA-A02:01	SINPFNASL	0.9404	0.74	0.6625	57.43	0.3202	11.9	1/982	1/7748
SNV	Breast	ERCC6L_T1048A_7	HLA-C05:01	SINPFNASL	0.9815	0.915	0.2238	79.13	0.2019	11.9	1/982	1/7748
SNV	Breast	EXD3_R643W_7	HLA-A02:01	MLQGLAWSL	0.9886	0.6375	0.0602	14.72	0.1911	5.52	1/982	1/7748
SNV	Breast	FAM129A_E248A_9	HLA-A02:01	ILSNLVMEA	0.9969	0.5069	0.3414	9.76	0.1567	26.51	1/982	1/7748
SNV	Breast	FAM129A_E248A_1	HLA-A02:01	ALLPTLQTDL	0.9414	0.6403	1.0335	388.21	0.6196	26.51	1/982	1/7748
SNV	Breast	FAM129A_E248A_4	HLA-C05:01	VMEALLPTL	0.9999	0.9883	0.2084	139.33	0.2479	26.51	1/982	1/7748
SNV	Breast	FAM160A2_R70H_2	HLA-B39:06	VHNHTYQML	0.9974	0.7871	0.1459	27.22	0.1093	18.98	1/982	1/7748
SNV	Breast	FAM71E1_G150V_8	HLA-C05:01	VANEVTMVV	0.9992	0.9759	0.2153	20.64	0.1248	46.85	1/982	1/7748
SNV	Breast	FAXDC2_H295R_2	HLA-B39:06	DRLHGTDTM	0.9808	0.7679	0.1989	55.44	0.1522	2	1/982	1/7748
SNV	Breast	FBLN2_L362M_6	HLA-B39:06	THAPSMGKAAL	0.9998	0.7667	0.3118	55.71	0.1526	42.25	1/982	1/7748
SNV	Breast	FBN3_E685Q_6	HLA-B39:06	GRDINQCAL	0.9847	0.9036	1.0574	366.43	0.3229	1.25	1/982	1/7748
SNV	Breast	FCGR1A_V109I_5	HLA-A02:01	LLLQISSRV	0.9876	0.5106	0.0989	61.95	0.33	44	1/982	1/7748
SNV	Breast	FGD6_A1177V_8	HLA-B39:06	ERDEWLEVI	0.9964	0.7307	0.2944	17.89	0.0884	15.23	1/982	1/7748
SNV	Breast	FRAS1_F2286L_6	HLA-B39:06	KHSDALSFTL	0.9976	0.7708	0.2061	57.29	0.1545	1.9	1/982	1/7748
SNV	Breast	FRAS1_F2286L_5	HLA-C05:01	HSDALSFTL	0.9999	0.9483	0.0234	2.02	0.0247	1.9	1/982	1/7748
SNV	Breast	GAL3ST4_R453H_2	HLA-B39:06	EHLATPEL	0.9999	0.9424	0.1051	65	0.1631	70.46	1/982	1/7748
SNV	Breast	GNB1_R52Q_3	HLA-A02:01	TLQGHLAKI	0.9061	0.5102	0.3693	166.06	0.4755	284.6	1/982	1/7748
SNV	Breast	GNL3L_D454G_5	HLA-C05:01	LGDTGPLEM	1	0.9663	0.0527	22.35	0.1284	37.28	1/982	1/7748
SNV	Breast	GNL3L_D454G_6	HLA-C05:01	LLGDTGPLEM	0.9988	0.9787	0.2823	75.5	0.1984	37.28	1/982	1/7748
SNV	Breast	GNPTAB_R1127H_2	HLA-B39:06	IHTNVSHVV	0.999	0.5608	0.0345	3.94	0.0338	53.69	1/982	1/7748
SNV	Breast	GON4L_M272I_5	HLA-A02:01	KLDDILDRT	0.9515	0.7251	0.7525	354.15	0.5995	38.64	1/982	1/7748
SNV	Breast	GON4L_M272I_5	HLA-A02:01	KLDDILDRTL	0.9707	0.7703	0.6574	16.84	0.2028	38.64	1/982	1/7748
SNV	Breast	GON4L_M272I_5	HLA-C05:01	KLDDILDRTL	0.9999	0.9666	0.0341	16.57	0.1145	38.64	1/982	1/7748
SNV	Breast	GPR141_L66Q_2	HLA-A02:01	FQLTVPFRL	0.9737	0.6761	0.2042	77.81	0.3593	8.81	1/982	1/7748
SNV	Breast	GPR141_L66Q_6	HLA-B39:06	VHSVFQLTV	0.9991	0.949	0.0304	13.16	0.0722	8.81	1/982	1/7748
SNV	Breast	GPR141_L66Q_2	HLA-B39:06	FQLTVPFRL	0.9664	0.8048	0.3514	143.84	0.2249	8.81	1/982	1/7748
SNV	Breast	HBS1L_R668H_2	HLA-B39:06	LHYGGSTIA	0.998	0.6808	0.0027	9.29	0.0612	17.17	1/982	1/7748
SNV	Breast	HBS1L_R668H_2	HLA-B39:06	LHYGGSTIAA	0.9989	0.7975	0.0415	123.46	0.2105	17.17	1/982	1/7748
SNV	Breast	HELZ2_R635W_6	HLA-B39:06	FRPPTWAEL	0.9971	0.9808	0.1739	10.56	0.0649	62.73	1/982	1/7748
SNV	Breast	IGF2R_R1356Q_6	HLA-A02:01	YLFEWQTQY	0.7764	0.6374	0.568	338.09	0.592	67.58	1/982	2/7748
SNV	Breast	IGF2R_R1356Q_6	HLA-A02:01	YLFEWQTQYA	0.9972	0.6891	0.3756	4.32	0.0929	67.58	1/982	2/7748
SNV	Breast	IGSF8_V110M_7	HLA-A02:01	RLQGDAMVL	0.975	0.7284	0.7275	190.88	0.4993	90.76	1/982	1/7748
SNV	Breast	IGSF8_V110M_8	HLA-B39:06	QRLQGDAMV	0.9969	0.9301	0.4903	321.76	0.3054	90.76	1/982	1/7748
SNV	Breast	IGSF8_V110M_8	HLA-B39:06	QRLQGDAMVL	0.9983	0.9372	0.8388	154.84	0.2318	90.76	1/982	1/7748
SNV	Breast	INCENP_Q464R_2	HLA-B39:06	ERHLEDEEL	0.9923	0.789	0.5031	315.44	0.3027	31.36	1/982	1/7748
SNV	Breast	INPP5B_E15K_6	HLA-A02:01	TLAEGKYCV	0.9833	0.7291	0.2355	16.12	0.1991	15.32	1/982	1/7748
SNV	Breast	INTS7_I107F_9	HLA-C05:01	NVDEFVKRF	0.9997	0.8736	0.1271	70.75	0.1938	44.59	1/982	1/7748
SNV	Breast	ITPR3_V1934M_7	HLA-C05:01	YINEDNMGL	0.9977	0.8206	0.2409	4.72	0.054	55.49	1/982	1/7748
SNV	Breast	KIF3B_Y527H_2	HLA-B39:06	THSSLQQEV	0.9989	0.8386	0.0288	7.04	0.0532	54.08	1/982	1/7748
SNV	Breast	LAMA4_A1814T_6	HLA-A02:01	ALVSGTVSI	0.9762	0.5626	0.097	2.95	0.0645	16.86	1/982	1/7748
SNV	Breast	LAMP3_T195M_7	HLA-B39:06	THAPGTMAA	0.9987	0.9428	0.0011	2.07	0.0134	90.15	1/982	1/7748
SNV	Breast	LAMP3_T195M_7	HLA-B39:06	THAPGTMAAA	0.9971	0.9538	0.071	111.43	0.2008	90.15	1/982	1/7748
SNV	Breast	LDHA_I121V_5	HLA-B39:06	FKFIVPNVV	0.9982	0.7942	0.1009	67.48	0.1657	280.89	1/982	1/7748
SNV	Breast	LIG4_G234R_8	HLA-A02:01	QLHDPSVRL	0.9157	0.7567	0.5996	58.09	0.3217	16.69	1/982	1/7748
SNV	Breast	LIG4_G234R_1	HLA-A02:01	RLSDISITL	0.9983	0.5584	0.043	1.33	0.0148	16.69	1/982	1/7748
SNV	Breast	LIG4_G234R_1	HLA-A02:01	RLSDISITLF	0.9953	0.5055	1.1985	427.82	0.6411	16.69	1/982	1/7748
SNV	Breast	LIG4_G234R_7	HLA-B39:06	LHDPSVRL	0.9994	0.925	1.0034	331.36	0.3094	16.69	1/982	1/7748
SNV	Breast	LIG4_G234R_2	HLA-B39:06	VRLSDISITL	0.9981	0.7176	0.8176	49.68	0.1442	16.69	1/982	1/7748
SNV	Breast	LIG4_G234R_8	HLA-C05:01	QLHDPSVRL	0.964	0.98	0.4235	266.36	0.3238	16.69	1/982	1/7748
SNV	Breast	LIG4_G234R_1	HLA-C05:01	RLSDISITL	0.9996	0.8128	0.2311	3.73	0.0458	16.69	1/982	1/7748
SNV	Breast	LIG4_G234R_1	HLA-C05:01	RLSDISITLF	0.9997	0.8147	1.047	425	0.3828	16.69	1/982	1/7748
SNV	Breast	LRRC32_A148T_6	HLA-A02:01	RLLGETPSL	0.995	0.7919	0.1218	1.46	0.0191	9.58	1/982	1/7748
SNV	Breast	LRRC32_A148T_6	HLA-C05:01	RLLGETPSL	0.931	0.9713	1.844	438.15	0.3867	9.58	1/982	1/7748
SNV	Breast	LRRC8A_E449G_5	HLA-C05:01	LVELGVLKL	0.9997	0.9456	0.2104	226.16	0.3031	46.73	1/982	1/7748
SNV	Breast	LRRC8A_E595A_6	HLA-C05:01	MANLTALEL	0.9988	0.9809	0.2627	105.73	0.2255	46.73	1/982	1/7748
SNV	Breast	LRRK1_R767H_8	HLA-A02:01	DLIEAKFHV	0.898	0.5663	0.6216	352.79	0.5989	11.68	1/982	1/7748
SNV	Breast	LRRK1_R767H_2	HLA-B39:06	FHVERIATL	0.9995	0.7154	0.0027	1.29	0.0037	11.68	1/982	1/7748
SNV	Breast	LTBP4_V1064M_10	HLA-B39:06	NRSFCGAHAM	0.9967	0.8051	0.8608	358.94	0.3201	27.07	1/982	1/7748
SNV	Breast	MAGEE1_P406H_2	HLA-B39:06	LHNPGEGPSTL	0.9996	0.9632	0.3757	109.18	0.1992	9.05	1/982	1/7748
SNV	Breast	MALSU1_Q40H_7	HLA-B39:06	LRLLAVHRL	0.9702	0.607	0.9187	199.62	0.2562	25.37	1/982	1/7748
SNV	Breast	MALSU1_Q40H_1	HLA-B39:06	HRLPVGAAF	0.9806	0.9475	0.5952	10.94	0.0659	25.37	1/982	1/7748
SNV	Breast	MAMDC4_R1040H_2	HLA-B39:06	LHSEPLPAT	0.9968	0.9163	0.0543	372.73	0.3252	10.98	1/982	1/7748
SNV	Breast	MAN2B2_R911C_5	HLA-C05:01	QADLCRVLL	0.9999	0.978	0.0841	430.73	0.3845	37.7	1/982	1/7748
SNV	Breast	MAPK7_T224M_1	HLA-B39:06	MRWYRAPEL	0.9983	0.8247	0.5774	10.55	0.0649	13.67	1/982	1/7748
SNV	Breast	MCOLN1_R419W_7	HLA-A02:01	ILIATLWVA	0.974	0.7541	0.0835	97.95	0.3889	33.7	1/982	1/7748
SNV	Breast	MCOLN1_R419W_3	HLA-A02:01	TLWVALPSV	0.9904	0.6934	0.043	2.59	0.0569	33.7	1/982	1/7748
SNV	Breast	MERTK_L850F_1	HLA-B39:06	FRLQLEKLL	0.9943	0.7814	0.2754	85.04	0.1817	29.66	1/982	1/7748
SNV	Breast	MGEA5_P148L_9	HLA-C05:01	GLDITFSNL	0.9999	0.9556	0.1416	32.96	0.1463	174.13	1/982	1/7748
SNV	Breast	MIOS_R206H_2	HLA-B39:06	HHNLAIFDL	0.9983	0.7791	0.0594	1.64	0.0074	22.58	1/982	1/7748
SNV	Breast	MIOS_R206H_3	HLA-B39:06	MHHNLAIFDL	0.9976	0.7752	0.2144	225.06	0.2682	22.58	1/982	1/7748
SNV	Breast	MMP15_R58W_8	HLA-B39:06	VHAENWLWL	0.9734	0.9703	0.4501	18.61	0.0906	41.67	1/982	1/7748
SNV	Breast	MUC16_A11739S_6	HLA-C05:01	TISPGSPEM	0.9544	0.9137	0.1324	356.24	0.3605	23.24	1/982	2/7748
SNV	Breast	MUC16_I12173T_1	HLA-B39:06	TQELGPYTL	0.8349	0.8198	0.3372	47.17	0.1402	23.24	1/982	1/7748
SNV	Breast	MYH14_A480V_5	HLA-C05:01	ILDIVGFEI	0.9997	0.8948	0.0419	1.78	0.0203	68.5	1/982	1/7748
SNV	Breast	NEDD1_V204A_7	HLA-B39:06	YHNFDSAHKA	0.9966	0.705	0.3211	348.32	0.3161	21.54	1/982	1/7748
SNV	Breast	NISCH_R979H_2	HLA-B39:06	YHFVTAIF	0.9987	0.562	0.9858	291.36	0.2941	45.3	1/982	1/7748
SNV	Breast	NISCH_R979H_2	HLA-B39:06	YHFVTAIFV	0.9981	0.5824	0.0288	9.42	0.0616	45.3	1/982	1/7748
SNV	Breast	NISCH_R979H_2	HLA-B39:06	YHFVTAIFVL	0.9965	0.548	0.456	13.06	0.0718	45.3	1/982	1/7748
SNV	Breast	NOL10_L264F_7	HLA-B39:06	LRSDKPFLV	0.9848	0.8399	0.3469	132.51	0.2171	36.4	1/982	1/7748
SNV	Breast	NOL10_L264V_7	HLA-B39:06	LRSDKPVLV	0.9796	0.9383	0.2295	141.53	0.2234	36.4	1/982	1/7748
SNV	Breast	NPHP4_G350D_3	HLA-C05:01	MVDHPAFAV	0.9999	0.9645	0.0334	1.85	0.0216	6.48	1/982	1/7748
SNV	Breast	NPHP4_G350D_3	HLA-C05:01	MVDHPAFAVI	0.9999	0.8993	0.1381	134.34	0.245	6.48	1/982	1/7748
SNV	Breast	NRAS_D57A_7	HLA-A02:01	CLLDILATA	0.9938	0.7016	0.0623	36.37	0.2708	67.32	1/982	1/7748
SNV	Breast	NUDT14_R72C_1	HLA-B39:06	CRFPGSLAA	0.9966	0.8425	0.017	76.5	0.1743	18.56	1/982	1/7748
SNV	Breast	NUP210_V435A_6	HLA-B39:06	DQDGGAHIL	0.9373	0.7599	0.7061	224.75	0.2681	127.96	1/982	1/7748
SNV	Breast	NUP210_V435A_8	HLA-C05:01	VVDQDGGAHI	0.9999	0.9476	0.0419	44.99	0.1639	127.96	1/982	1/7748
SNV	Breast	OBSCN_R3332S_4	HLA-A02:01	LQISGLAMV	0.986	0.6606	0.1866	116.27	0.4145	13.62	1/982	1/7748
SNV	Breast	OFD1_C503F_1	HLA-B39:06	FRQALHKQL	0.9949	0.7066	0.2253	270.47	0.2866	29.29	1/982	1/7748
SNV	Breast	PAF1_M356T_4	HLA-B39:06	HRDTNEKEL	0.9918	0.7946	0.7	37.24	0.1234	113.88	1/982	1/7748
SNV	Breast	PGF_P96S_1	HLA-C05:01	SVETANVTM	0.9998	0.9653	0.1294	265.38	0.3233	13.74	1/982	1/7748
SNV	Breast	PIGQ_L490I_7	HLA-B39:06	IHLLVDIINSL	0.9996	0.6688	0.9858	67.14	0.1653	12.85	1/982	1/7748
SNV	Breast	PIGQ_L490I_4	HLA-C05:01	LVDIINSL	1	0.871	0.088	367.79	0.3646	12.85	1/982	1/7748
SNV	Breast	PIGQ_L490I_5	HLA-C05:01	LLVDIINSL	0.9956	0.8728	0.3409	420.36	0.3815	12.85	1/982	1/7748
SNV	Breast	PIGV_L390P_7	HLA-B39:06	VHAAVLPLF	0.9933	0.862	0.9858	99.07	0.1924	12.2	1/982	1/7748
SNV	Breast	PLB1_F814L_1	HLA-A02:01	LLNQAVPGA	0.9708	0.6714	0.4323	178.15	0.4875	4.56	1/982	1/7748
SNV	Breast	PLEC_Y2918H_2	HLA-B39:06	PHTGQQISL	0.9562	0.5975	1.3105	494.64	0.3632	112.16	1/982	1/7748
SNV	Breast	PLEKHA5_E1063K_4	HLA-C05:01	SVDKQEETV	0.9999	0.9511	0.0261	55.34	0.1767	2.5	1/982	1/7748
SNV	Breast	PPFIBP1_I776V_9	HLA-B39:06	HHLSIKRAV	0.999	0.7782	0.0027	6.38	0.0504	13.14	1/982	1/7748
SNV	Breast	PPP1R13L_A682T_5	HLA-A02:01	FLITTGANV	0.9937	0.5863	0.069	3.32	0.0722	25.17	1/982	1/7748
SNV	Breast	PPP2R3C_I379T_1	HLA-B39:06	THGQDPVSF	0.8968	0.8446	1.2619	292.1	0.2943	20.71	1/982	1/7748
SNV	Breast	PRKAR2A_A340V_8	HLA-A02:01	GQYFGELVLV	0.9915	0.6322	0.9285	392.99	0.6223	85.74	1/982	1/7748
SNV	Breast	PRKAR2A_A340V_8	HLA-B39:06	GQYFGELVL	0.9556	0.9007	0.3886	207.25	0.2599	85.74	1/982	1/7748
SNV	Breast	PRKCB_V196I_7	HLA-A02:01	GLSDPYIKL	0.9955	0.5085	0.2542	2.68	0.0584	17.9	1/982	1/7748
SNV	Breast	PRKCB_V196I_6	HLA-C05:01	LSDPYIKL	1	0.7765	0.0334	469.24	0.3954	17.9	1/982	1/7748
SNV	Breast	PRKCB_V196I_7	HLA-C05:01	GLSDPYIKL	0.9985	0.8996	0.5495	50.23	0.1706	17.9	1/982	1/7748
SNV	Breast	PRKCB_V196I_6	HLA-C05:01	LSDPYIKLKL	0.9999	0.8013	0.1651	162.91	0.2651	17.9	1/982	1/7748
SNV	Breast	PRUNE2_V1942M_2	HLA-A02:01	FMSAAGDEL	0.9743	0.5024	0.1668	30.66	0.2541	4.25	1/982	2/7748
SNV	Breast	PRUNE2_V1942M_2	HLA-C05:01	FMSAAGDEL	0.9888	0.9446	0.311	33.92	0.1476	4.25	1/982	1/7748
SNV	Breast	PTPN7_S110N_3	HLA-C05:01	FVNPEDLDI	0.9937	0.9013	0.4389	41.8	0.1595	42.1	1/982	1/7748
SNV	Breast	PXYLP1_N5S_9	HLA-B39:06	FRSRFLLLL	0.9943	0.6204	0.196	160.01	0.2349	12.23	1/982	1/7748
SNV	Breast	PXYLP1_N5S_7	HLA-B39:06	SRFLLLLAL	0.9956	0.929	0.0556	10.84	0.0657	12.23	1/982	1/7748
SNV	Breast	RALGAPA2_E1515K_1	HLA-C05:01	KGDDVLDKL	0.9996	0.8949	0.0587	57.43	0.1793	16.17	1/982	1/7748
SNV	Breast	RAPGEF2_G71V_2	HLA-C05:01	AVDMDLSGL	0.9998	0.9829	0.1133	27.48	0.1379	14.34	1/982	1/7748
SNV	Breast	RBM27_S26L_7	HLA-C05:01	ICDADPLAL	0.9999	0.897	0.0711	35.49	0.1497	15.27	1/982	1/7748
SNV	Breast	RFX1_A761V_9	HLA-A02:01	SLNHLAQAV	0.9947	0.7664	0.2276	56.83	0.3188	18.63	1/982	1/7748
SNV	Breast	RFX1_A761V_6	HLA-A02:01	HLAQAVRAV	0.9882	0.814	0.4794	209.47	0.5144	18.63	1/982	1/7748
SNV	Breast	RFX1_A761V_7	HLA-B39:06	NHLAQAVRA	0.9983	0.9063	0.016	404.33	0.3361	18.63	1/982	1/7748
SNV	Breast	RFX1_A761V_7	HLA-B39:06	NHLAQAVRAV	0.9976	0.9434	0.2189	250.46	0.2789	18.63	1/982	1/7748
SNV	Breast	RHBDF2_R401Q_6	HLA-C05:01	SFDSHQPYF	0.9974	0.7714	0.1939	61.53	0.1841	34.09	1/982	1/7748
SNV	Breast	RMDN3_S163A_5	HLA-C05:01	FTASAGATF	0.823	0.9741	0.6274	59.21	0.1814	26.37	1/982	1/7748
SNV	Breast	RNF112_K39Q_7	HLA-B39:06	SHTPFPQL	0.9998	0.8516	0.1545	111.82	0.2011	1.14	1/982	1/7748
SNV	Breast	RNF112_K39Q_7	HLA-B39:06	SHTPFPQLEL	0.9982	0.8463	0.4849	4.73	0.0387	1.14	1/982	1/7748
SNV	Breast	RNF146_N151H_7	HLA-C05:01	YVADLEHMV	0.9995	0.9267	0.8003	8.23	0.0779	31.4	1/982	2/7748
SNV	Breast	RNF207_R80Q_7	HLA-A02:01	GLPPVDQLL	0.9357	0.6374	0.7168	33	0.2613	15.5	1/982	1/7748
SNV	Breast	RNF207_R80Q_7	HLA-C05:01	GLPPVDQLL	0.968	0.9585	0.4824	293.25	0.3359	15.5	1/982	1/7748
SNV	Breast	RTN4_K1120T_6	HLA-A02:01	LVDSLTFAV	0.9882	0.7241	0.1134	188.07	0.4968	91.78	1/982	1/7748
SNV	Breast	RTN4_K1120T_6	HLA-C05:01	LVDSLTFAV	0.9998	0.9802	0.1154	3.19	0.0415	91.78	1/982	1/7748
SNV	Breast	SACS_Y1367H_5	HLA-B39:06	IRWLHSNQI	0.9916	0.6898	0.1396	321.93	0.3055	6.04	1/982	1/7748
SNV	Breast	SELP_I70T_9	HLA-B39:06	NRYTDLVAT	0.9936	0.7479	0.1812	155.25	0.2321	1.37	1/982	1/7748
SNV	Breast	SEMA4F_G423D_4	HLA-C05:01	PADDHPLLV	0.9999	0.9389	0.0334	36.23	0.1508	4.12	1/982	1/7748
SNV	Breast	SEMA4F_G423D_5	HLA-C05:01	FPADDHPLLV	0.9946	0.9544	0.7358	3.74	0.0459	4.12	1/982	1/7748
SNV	Breast	SEPT5_A78D_5	HLA-A02:01	KLLSDEERI	0.9799	0.7146	0.8398	47.78	0.2974	17.17	1/982	1/7748
SNV	Breast	SETD2_Y480F_6	HLA-B39:06	SHSSSFRDL	0.9946	0.6848	0.196	127.86	0.2138	62.33	1/982	1/7748
SNV	Breast	SH2D2A_R378S_4	HLA-C05:01	LQDSGQAWL	0.9993	0.9875	0.1651	78.69	0.2015	40	1/982	1/7748
SNV	Breast	SH3KBP1_T88P_7	HLA-A02:01	SLLSSEPIL	0.9671	0.7903	0.5286	44.16	0.2897	61.72	1/982	1/7748
SNV	Breast	SLC25A10_R158G_1	HLA-B39:06	GRLFSGATM	0.983	0.9423	1.4281	367.89	0.3234	14.62	1/982	1/7748
SNV	Breast	SLC25A47_C176Y_7	HLA-B39:06	AREEGLYGL	0.9926	0.7816	0.9684	54.05	0.1505	1.15	1/982	1/7748
SNV	Breast	SLC30A1_A303V_7	HLA-A02:01	IINSTHVSV	0.9855	0.6039	0.9551	393.76	0.6228	34.72	1/982	1/7748
SNV	Breast	SLC30A7_A130V_8	HLA-C05:01	FSEGVERVL	0.9999	0.9176	0.0861	249.37	0.3155	31.38	1/982	1/7748
SNV	Breast	SLC52A1_S431N_7	HLA-A02:01	AMFPPTNIYHV	0.9964	0.5622	0.6195	28.07	0.2461	5.84	1/982	1/7748
SNV	Breast	SLCO5A1_D100G_4	HLA-B39:06	HRVGLSKTF	0.9367	0.7932	1.0306	281.6	0.2907	2.4	1/982	1/7748
SNV	Breast	SMARCC1_D675N_6	HLA-A02:01	YLENSNASL	0.9671	0.5496	0.7351	12.32	0.1754	31.6	1/982	1/7748
SNV	Breast	SMARCC1_D675N_6	HLA-C05:01	YLENSNASL	0.9999	0.8825	0.0755	3.24	0.0419	31.6	1/982	1/7748
SNV	Breast	SMARCE1_R201H_2	HLA-B39:06	HHLISEIL	0.9996	0.6024	0.0979	25.17	0.1058	17.48	1/982	1/7748
SNV	Breast	SMARCE1_R201H_8	HLA-B39:06	ARFQRNHHL	0.9942	0.68	0.2144	203.44	0.2581	17.48	1/982	1/7748
SNV	Breast	SMARCE1_R201H_3	HLA-B39:06	NHHLISEIL	0.9974	0.6993	0.0189	1.52	0.0063	17.48	1/982	1/7748
SNV	Breast	SMCR8_S808N_8	HLA-B39:06	SRYSRYTNI	0.9843	0.6104	0.5339	477.53	0.3585	33.92	1/982	1/7748
SNV	Breast	SMCR8_S808N_5	HLA-B39:06	SRYTNILDL	0.9915	0.7312	0.3757	9.27	0.0611	33.92	1/982	1/7748
SNV	Breast	SPSB1_E69D_4	HLA-C05:01	FVKDDDKLIF	0.9998	0.8687	0.7219	43.74	0.1622	52.14	1/982	1/7748
SNV	Breast	SRPX2_E173Q_7	HLA-B39:06	GRWSGGQPV	0.9911	0.9339	0.7274	186.77	0.2495	7.64	1/982	1/7748
SNV	Breast	STARD7_L162I_3	HLA-B39:06	THIYQYRVF	0.9867	0.5485	1.3105	421.91	0.3419	198.38	1/982	1/7748
SNV	Breast	STARD8_V315M_9	HLA-A02:01	HLDDILQHM	0.9939	0.6542	0.2042	3.38	0.073	7.31	1/982	1/7748
SNV	Breast	STARD8_V315M_2	HLA-A02:01	HMWGLQQRV	0.9945	0.8121	0.1811	10.36	0.1615	7.31	1/982	1/7748
SNV	Breast	STARD8_V315M_9	HLA-C05:01	HLDDILQHM	0.9999	0.9645	0.0021	1.36	0.0113	7.31	1/982	1/7748
SNV	Breast	STARD8_V315M_11	HLA-C05:01	YAHLDDILQHM	0.9999	0.9768	1.6161	151.43	0.2566	7.31	1/982	1/7748
SNV	Breast	SVEP1_L578V_1	HLA-B44:02	VEQQDSANVTW	0.9997	0.8469	0.0094	8.55	0.1033	1.38	1/982	1/7748
SNV	Breast	TBC1D2_G564V_7	HLA-B39:06	SKYDEYVFL	0.9787	0.7777	1.1423	120.79	0.2084	26.38	1/982	1/7748
SNV	Breast	TBL2_A206T_1	HLA-C05:01	TSSDTTVLI	0.9991	0.9504	0.2979	419.46	0.3812	55.02	1/982	1/7748
SNV	Breast	TBX3_P650L_2	HLA-C05:01	VLDGSSLL	1	0.9804	0.047	50.28	0.1706	1.1	1/982	1/7748
SNV	Breast	TFE3_T205A_4	HLA-A02:01	YLSATLGPKL	0.9813	0.7531	0.6596	182.56	0.4917	81.42	1/982	1/7748
SNV	Breast	TF_L522P_8	HLA-A02:01	KLCMGSGPNL	0.9018	0.8413	0.9197	222.13	0.5239	2	1/982	1/7748
SNV	Breast	TGFBR3_K98T_3	HLA-B39:06	HHTSVVFL	0.9998	0.7503	0.0979	25.63	0.1066	3.42	1/982	1/7748
SNV	Breast	TGFBR3_K98T_6	HLA-B39:06	VHIHHTSVV	0.998	0.7645	0.0095	17.81	0.0881	3.42	1/982	1/7748
SNV	Breast	TGFBR3_K98T_4	HLA-B39:06	IHHTSVVFL	0.9974	0.677	0.0428	3.59	0.0313	3.42	1/982	1/7748
SNV	Breast	TGFBR3_K98T_3	HLA-B39:06	HHTSVVFLL	0.999	0.8511	0.0206	1.37	0.0047	3.42	1/982	1/7748
SNV	Breast	TG_E1223D_3	HLA-C05:01	ASDVVGGTI	0.9997	0.8691	0.047	9.26	0.0842	2.52	1/982	1/7748
SNV	Breast	TKT_R401H_8	HLA-B39:06	TRAFDQIHM	0.9973	0.6895	0.8868	228.41	0.2697	203.22	1/982	1/7748
SNV	Breast	TLN1_R1618Q_7	HLA-A02:01	GLIQTAQAL	0.9274	0.6086	0.5471	119.29	0.4189	228.84	1/982	1/7748
SNV	Breast	TM9SF2_M317V_5	HLA-A02:01	FLSGVVAMI	0.9954	0.5803	0.0201	2.67	0.0582	290.34	1/982	1/7748
SNV	Breast	TM9SF2_M317V_5	HLA-C05:01	FLSGVVAMI	0.9831	0.9849	0.581	117.08	0.2338	290.34	1/982	1/7748
SNV	Breast	TMEM132A_T630M_5	HLA-A02:01	ALAVMDDKV	0.9741	0.5609	0.5579	353.7	0.5993	24.63	1/982	1/7748
SNV	Breast	TMEM132A_T630M_3	HLA-A02:01	AVMDDKVSV	0.9888	0.6374	0.3449	7.25	0.1322	24.63	1/982	1/7748
SNV	Breast	TMEM132A_T630M_2	HLA-A02:01	VMDDKVSVL	0.9886	0.6399	0.3914	4.82	0.1015	24.63	1/982	1/7748
SNV	Breast	TMEM132A_T630M_5	HLA-A02:01	ALAVMDDKVSV	0.986	0.6523	0.9966	8.24	0.1429	24.63	1/982	1/7748
SNV	Breast	TMEM132A_T630M_2	HLA-C05:01	VMDDKVSVL	1	0.973	0.0014	1.2	0.007	24.63	1/982	1/7748
SNV	Breast	TMEM132A_T630M_3	HLA-C05:01	AVMDDKVSVL	0.9997	0.988	0.6094	94.89	0.2167	24.63	1/982	1/7748
SNV	Breast	TMEM132A_T630M_2	HLA-C05:01	VMDDKVSVLEL	1	0.986	0.0819	181.6	0.2776	24.63	1/982	1/7748
SNV	Breast	TOP3A_E254D_1	HLA-B39:06	DRFKAIQAF	0.9546	0.7679	0.4099	77.93	0.1756	26.67	1/982	1/7748
SNV	Breast	TRIM17_E85K_1	HLA-A02:01	KMAQQHPGL	0.9396	0.5573	0.3101	264.72	0.5524	1.02	1/982	1/7748
SNV	Breast	TSHZ1_S987T_1	HLA-B39:06	THLETHLGF	0.9842	0.782	0.6627	14.99	0.0785	9.37	1/982	1/7748
SNV	Breast	TSHZ1_S987T_1	HLA-B39:06	THLETHLGFSL	0.9999	0.8413	0.3699	40.6	0.1288	9.37	1/982	1/7748
SNV	Breast	TTC7B_A142V_7	HLA-B39:06	YRLRVIVEA	0.9986	0.792	0.0556	78.69	0.1762	3.32	1/982	1/7748
SNV	Breast	TYK2_Y1019H_2	HLA-B39:06	HHIHRDLAA	0.9991	0.7178	0.0004	55.48	0.1523	65.97	1/982	1/7748
SNV	Breast	UBXN11_E231K_3	HLA-A02:01	TLKPIPLKL	0.9392	0.6385	0.9749	143.62	0.4506	18.28	1/982	1/7748
SNV	Breast	UBXN11_E231K_5	HLA-B39:06	LRTLKPIPL	0.9847	0.9013	0.5654	253.32	0.2801	18.28	1/982	1/7748
SNV	Breast	UNC13B_S222L_9	HLA-A02:01	HQFPVPVRL	0.9484	0.8684	0.9795	164.61	0.474	40.7	1/982	1/7748
SNV	Breast	UNC13B_S222L_9	HLA-B39:06	HQFPVPVRL	0.9987	0.8921	0.0578	2.67	0.0198	40.7	1/982	1/7748
SNV	Breast	UNC13B_S222L_3	HLA-B39:06	VRLPQQLLL	0.9972	0.8026	0.5844	34.46	0.1199	40.7	1/982	1/7748
SNV	Breast	UNC13B_S222L_10	HLA-B39:06	VHQFPVPVRL	0.9863	0.9005	0.8176	9.45	0.0617	40.7	1/982	1/7748
SNV	Breast	VDR_R130H_8	HLA-A02:01	KLSEEQQHI	0.9966	0.5661	0.2276	17.57	0.2064	38.69	1/982	2/7748
SNV	Breast	VDR_R130H_2	HLA-B39:06	QHIIAILL	0.9997	0.5126	0.1184	35.39	0.1211	38.69	1/982	1/7748
SNV	Breast	WFIKKN1_P2T_9	HLA-A02:01	ALRPLLPLL	0.9531	0.5654	0.3601	26.32	0.2406	2.06	1/982	1/7748
SNV	Breast	WFIKKN1_P2T_8	HLA-B39:06	LRPLLPLLL	0.9933	0.9816	0.7551	225.81	0.2685	2.06	3/982	3/7748
SNV	Breast	WFIKKN1_P2T_8	HLA-B39:06	LRPLLPLLL	0.9933	0.9816	0.7551	225.81	0.2685	2.06	3/982	3/7748
SNV	Breast	WFIKKN1_P2T_8	HLA-B39:06	LRPLLPLLL	0.9933	0.9816	0.7551	225.81	0.2685	2.06	3/982	3/7748
SNV	Breast	YIF1B_G187W_9	HLA-B39:06	DRFSPDLLWL	0.9816	0.9734	1.3211	206.16	0.2594	38.65	1/982	1/7748
SNV	Breast	YOD1_R184L_3	HLA-B39:06	MRLLIAQIV	0.9978	0.8436	0.1135	146.52	0.2266	15.62	1/982	1/7748
SNV	Breast	ZFP30_R338Q_4	HLA-B39:06	FRVQQQLTL	0.9988	0.8444	0.0415	2.95	0.0241	9.68	1/982	1/7748
SNV	Breast	ZMYM2_N460S_7	HLA-B39:06	NRYRMASGL	0.9867	0.9297	0.6011	29.94	0.1136	27.14	1/982	1/7748
SNV	Breast	ZMYM2_N460S_5	HLA-B39:06	YRMASGLIM	0.9961	0.8134	0.1913	3.12	0.0264	27.14	1/982	1/7748
SNV	Breast	ZNF697_C386R_3	HLA-B44:02	GERGKRFSW	0.9913	0.7199	0.0771	6.97	0.0946	3.49	1/982	1/7748
SNV	Breast	ZNF75A_M119I_5	HLA-B39:06	NHFDIHRV	0.9994	0.7517	0.0415	95.25	0.1896	9.43	1/982	1/7748
SNV	Breast	ZNRF1_D126G_7	HLA-B39:06	SRASLAGAL	0.9957	0.8991	0.1485	26.75	0.1086	14.7	1/982	1/7748
SNV	Breast	ZSWIM4_V112M_3	HLA-A02:01	GAMDRVLQV	0.9865	0.7092	0.3811	47.69	0.2972	15.61	1/982	1/7748
SNV	Breast	ZSWIM4_V112M_9	HLA-B39:06	LHLLQSGAM	0.987	0.9884	0.1333	311.05	0.3009	15.61	1/982	1/7748
SNV	Breast	ZSWIM4_V112M_3	HLA-C05:01	GAMDRVLQV	0.9976	0.9469	0.4779	200.92	0.2892	15.61	1/982	1/7748
SNV	Breast	ZYG11B_S519G_4	HLA-A02:01	FTLGALWNL	0.9802	0.7328	0.0931	75.13	0.3547	23.28	1/982	1/7748
SNV	Breast	FMN1_R1196K_1	HLA-B15:01	KTRGQADGY	0.997	0.7248	0.6098	384.23	0.4736	5.15	1/982	1/7748
SNV	Breast	TEC_V465I_5	HLA-C03:03	FSRDILLSM	0.9989	0.9659	0.0143	18.27	0.1306	2.83	1/982	1/7748
SNV	Breast	THADA_Y701F_9	HLA-B15:01	IQESSQVLF	0.985	0.8379	0.4289	78.47	0.2641	13.78	1/982	1/7748
SNV	Breast	THADA_Y701F_10	HLA-B15:01	RIQESSQVLF	0.9997	0.8298	0.5725	209.86	0.3776	13.78	1/982	1/7748
SNV	Breast	ANKRD13D_M79I_1	HLA-B57:01	ITWQRGRRSF	0.9916	0.8668	0.5986	100.84	0.2833	10.45	1/982	1/7748
SNV	Breast	ATP5SL_E63Q_5	HLA-A02:01	LLQRQMYKV	0.9867	0.6673	0.1286	486.09	0.6692	18.53	1/982	1/7748
SNV	Breast	ATP5SL_E63Q_6	HLA-A02:01	YLLQRQMYKV	0.9947	0.7416	0.3713	382.88	0.6166	18.53	1/982	1/7748
SNV	Breast	CACNA2D1_T282I_1	HLA-A02:01	ILSDDDFVNV	0.9981	0.6361	0.3346	2.66	0.0581	5.79	1/982	1/7748
SNV	Breast	EXOC4_S21L_6	HLA-B57:01	KSKDPLGLL	0.9756	0.9649	0.387	195.09	0.3621	18.51	1/982	1/7748
SNV	Breast	MUC16_E530K_3	HLA-B57:01	FSKPQHTQW	0.9999	0.9292	0.0094	1.2	0.0051	1.06	1/982	1/7748
SNV	Breast	MUC16_E530K_4	HLA-B57:01	QFSKPQHTQW	0.9962	0.9679	0.4914	2.34	0.0286	1.06	1/982	1/7748
SNV	Breast	MUC16_E530K_5	HLA-B57:01	QQFSKPQHTQW	0.9996	0.9619	0.567	24.86	0.178	1.06	1/982	1/7748
SNV	Breast	PDGFRA_E571K_8	HLA-B35:08	SISPDGHKY	0.9696	0.5496	0.3016	72.79	0.1532	17.53	1/982	1/7748
SNV	Breast	PTPRH_C275F_5	HLA-A02:01	SLYTFSVWV	0.9838	0.7754	0.0191	5.89	0.1162	1.55	1/982	1/7748
SNV	Breast	PTPRH_C275F_6	HLA-B57:01	GSLYTFSVW	0.9985	0.9917	0.0485	10.7	0.1117	1.55	1/982	1/7748
SNV	Breast	XRN2_R615Q_7	HLA-A02:01	FLPPSWQKL	0.9933	0.8172	0.2736	23.39	0.2307	91.91	1/982	1/7748
SNV	Breast	ATAD2B_D508G_7	HLA-C07:02	IFFDEIGGL	0.5049	0.869	0.5982	204.73	0.2727	9.87	1/982	1/7748
SNV	Breast	BTBD3_A151V_9	HLA-A02:01	AVGSSVFHV	0.9696	0.6933	0.1482	88.19	0.3754	31.09	1/982	1/7748
SNV	Breast	MKRN2_D351N_7	HLA-C07:02	YRHAYPNGRL	0.9858	0.8969	0.6807	245.21	0.2939	42.79	1/982	1/7748
SNV	Breast	MKRN2_D351N_7	HLA-C06:02	YRHAYPNGRL	0.9303	0.9888	0.6646	75.33	0.0844	42.79	1/982	1/7748
SNV	Breast	MORN3_G25S_1	HLA-A02:01	SLRSQVYAV	0.9345	0.5905	0.1166	55.81	0.3165	12.71	1/982	1/7748
SNV	Breast	TAF1_M879V_8	HLA-B50:01	TEEEIRAVV	0.6949	0.8184	0.1134	76.03	0.1762	14.66	1/982	1/7748
SNV	Breast	ZXDC_P624T_6	HLA-A02:01	NLSDDTLAL	0.9544	0.6957	0.1811	11.21	0.1678	8.65	1/982	1/7748
SNV	Breast	DIP2B_Y1405S_7	HLA-B57:03	HTASGYSTI	0.8963	0.958	1.568	199.54	0.4264	12.39	1/982	1/7748
SNV	Breast	DIP2B_Y1405S_1	HLA-B57:03	STIYDSETL	0.5144	0.9775	0.8518	267.86	0.4772	12.39	1/982	1/7748
SNV	Breast	MINK1_I189N_4	HLA-B57:03	NTFNGTPYW	0.903	0.9628	0.0299	1.45	0.0063	30.2	1/982	1/7748
SNV	Breast	NF1_R1250W_7	HLA-B57:03	VTLFDSWHL	0.836	0.9944	0.1623	364.01	0.5371	10.61	1/982	1/7748
SNV	Breast	NF1_R1250W_5	HLA-C04:01	LFDSWHLL	1	0.8758	0.0423	31.69	0.0458	10.61	1/982	1/7748
SNV	Breast	NF1_R1250W_5	HLA-C04:01	LFDSWHLLY	0.9383	0.8327	0.224	72.21	0.065	10.61	1/982	1/7748
SNV	Breast	AFF3_P1144L_9	HLA-C12:03	LSNASALSL	0.9969	0.9901	0.1715	52.77	0.3777	61.92	1/982	1/7748
SNV	Breast	AFF3_P1144L_5	HLA-C12:03	SALSLSTIV	0.938	0.9706	0.3784	204.03	0.7405	61.92	1/982	1/7748
SNV	Breast	AFF3_P1144L_3	HLA-C12:03	LSLSTIVSI	0.942	0.9684	0.2699	160.06	0.6568	61.92	1/982	1/7748
SNV	Breast	CMYA5_G2950V_9	HLA-C12:03	TAFSIISEV	0.9921	0.9704	0.0208	4.29	0.0474	13.11	1/982	1/7748
SNV	Breast	NALCN_R382Q_2	HLA-B38:01	MQSSVFHMF	0.73	0.9841	0.1	159.29	0.0921	1.09	1/982	1/7748
SNV	Breast	NALCN_R382Q_2	HLA-C12:03	MQSSVFHMF	0.9425	0.9846	1.4964	360.15	0.9449	1.09	1/982	1/7748
SNV	Breast	RBBP5_T168M_1	HLA-C12:03	MGNAKGKIL	0.8218	0.974	1.7745	442.2	1.0244	36.76	1/982	2/7748
SNV	Breast	SYNPO2L_F820S_1	HLA-A24:02	SFPQAARTL	0.9664	0.6408	0.4088	23.75	0.2891	1.82	1/982	1/7748
SNV	Breast	UHRF1BP1L_S282F_9	HLA-C12:03	MAPEPTQSF	0.9938	0.9705	0.026	5.94	0.0714	14.15	1/982	1/7748
SNV	Breast	ZNF764_G213S_4	HLA-C12:03	KGFSHASSL	0.981	0.9821	0.2434	11.69	0.1406	20.37	1/982	1/7748
SNV	Breast	AIM1L_D1407G_5	HLA-C04:01	NFEGGQHIL	0.9962	0.7119	0.0281	123.5	0.079	3.73	1/982	1/7748
SNV	Breast	BRD9_V486I_6	HLA-B35:01	DSSSSILEF	0.9486	0.8586	0.1884	61.24	0.2622	14.82	1/982	1/7748
SNV	Breast	METTL21A_C173Y_5	HLA-A32:01	ILLAYRIRY	0.7891	0.9034	1.0136	189.23	0.1958	5.51	1/982	1/7748
SNV	Breast	NCEH1_R139G_5	HLA-B35:01	EPLKGSVVY	0.9917	0.738	0.049	1.24	0.0157	2.55	1/982	1/7748
SNV	Breast	TNFAIP3_S217T_2	HLA-A32:01	RTLESGSNF	0.9901	0.939	0.0809	8.29	0.0348	10.19	1/982	1/7748
SNV	Breast	ZFR_V76F_8	HLA-B35:01	APVAAHTF	0.9617	0.9331	0.5604	455.46	0.4773	28.56	1/982	1/7748
SNV	Breast	ZFR_V76F_9	HLA-B35:01	QAPVAAHTF	0.968	0.9677	0.108	309.42	0.4285	28.56	1/982	1/7748
SNV	Breast	ZFR_V76F_5	HLA-B35:01	AAHTFTAAY	0.9911	0.8073	0.02	3.27	0.0632	28.56	1/982	1/7748
SNV	Breast	CRTC3_E582K_6	HLA-B35:02	TPFPLKEEL	0.9309	0.9359	0.0166	5.08	0.0194	26.35	1/982	1/7748
SNV	Breast	CRTC3_E582K_4	HLA-B35:02	FPLKEELQI	0.9917	0.9603	0.0166	16.25	0.0397	26.35	1/982	1/7748
SNV	Breast	PLA2G4A_P586L_8	HLA-B35:02	RPSDSSPLF	0.7302	0.9127	0.304	190.26	0.1252	3.38	1/982	1/7748
SNV	Breast	PLA2G4A_P586L_3	HLA-B35:02	SPLFKELLL	0.6792	0.7614	0.1644	384.91	0.1656	3.38	1/982	1/7748
SNV	Breast	ARHGEF26_V797I_6	HLA-B15:01	TQVEIIRSF	0.9997	0.8868	0.0428	1.72	0.0085	14.51	1/982	1/7748
SNV	Breast	ENC1_D131V_1	HLA-B15:01	VIRDACAEF	0.999	0.8416	0.0721	49.1	0.2159	60.39	1/982	1/7748
SNV	Breast	FLNA_T608M_7	HLA-C05:01	IGDDVGMLGF	1	0.9798	0.294	170.1	0.27	331.19	1/982	1/7748
SNV	Breast	FZD2_R461H_5	HLA-B15:01	RLMVHIGVF	0.9978	0.6419	0.0291	25.21	0.158	6.47	1/982	2/7748
SNV	Breast	PEX14_E76D_4	HLA-C05:01	AADDPSSL	1	0.9416	0.017	121.29	0.2367	12.5	1/982	1/7748
SNV	Breast	PEX14_E76D_5	HLA-C03:04	TAADDPSSL	0.9995	0.9845	0.0284	5.06	0.0503	12.5	1/982	1/7748
SNV	Breast	PLEKHF2_S120L_9	HLA-C05:01	YAATATEKL	0.9943	0.8892	0.2409	152.45	0.2574	98.95	1/982	1/7748
SNV	Breast	PLEKHF2_S120L_9	HLA-C03:04	YAATATEKL	0.9998	0.9863	0.0049	2.2	0.0202	98.95	1/982	1/7748
SNV	Breast	PPARA_M330I_7	HLA-A02:01	VMNKDGILV	0.9882	0.6266	0.3842	51	0.3049	2.28	1/982	1/7748
SNV	Breast	PPARA_M330I_1	HLA-B15:01	ILVAYGNGF	0.9734	0.9626	0.0993	42.51	0.2003	2.28	1/982	1/7748
SNV	Breast	PPARA_M330I_7	HLA-B15:01	VMNKDGILVAY	1	0.9234	0.352	398.78	0.4799	2.28	1/982	1/7748
SNV	Breast	PPARA_M330I_7	HLA-C05:01	VMNKDGILV	0.9933	0.952	0.7907	470.05	0.3956	2.28	1/982	1/7748
SNV	Breast	TTC7A_G479R_3	HLA-B15:01	SLREEAGEF	0.9992	0.9749	0.1491	7.34	0.0695	12.84	1/982	1/7748
SNV	Breast	ZNF445_R807L_2	HLA-C05:01	YLHQRIHSL	0.6541	0.8799	0.2823	205.76	0.292	8.81	1/982	1/7748
SNV	Breast	ZNF445_R807L_2	HLA-C03:04	YLHQRIHSL	0.9699	0.9671	0.1008	14.5	0.1087	8.81	1/982	1/7748
SNV	Breast	ZNF721_I670V_7	HLA-C03:04	KAFGWSVAL	0.9995	0.9968	0.0013	1.55	0.0099	9.74	1/982	1/7748
SNV	Breast	AGO2_C717S_4	HLA-A02:01	RLFSTDKNERV	0.9948	0.6717	0.875	387.77	0.6194	21.57	1/982	1/7748
SNV	Breast	CEP290_V2474I_7	HLA-B44:03	DEEESPINF	0.9866	0.9438	0.3	283.5	0.3644	11.18	1/982	1/7748
SNV	Breast	CEP290_V2474I_5	HLA-B44:03	EESPINFPIY	0.9969	0.9083	0.0563	3.33	0.0676	11.18	2/982	2/7748
SNV	Breast	CEP290_V2474I_5	HLA-B44:03	EESPINFPIY	0.9969	0.9083	0.0563	3.33	0.0676	11.18	2/982	2/7748
SNV	Breast	CEP290_V2474I_7	HLA-B18:01	DEEESPINF	0.9937	0.9522	0.1148	6.93	0.0472	11.18	1/982	1/7748
SNV	Breast	CEP290_V2474I_5	HLA-B18:01	EESPINFPIY	0.938	0.9053	0.0709	7.22	0.0489	11.18	2/982	2/7748
SNV	Breast	CEP290_V2474I_5	HLA-B18:01	EESPINFPIY	0.938	0.9053	0.0709	7.22	0.0489	11.18	2/982	2/7748
SNV	Breast	DGKD_D555N_1	HLA-B44:03	NESQASSSL	0.973	0.9535	0.3038	167.18	0.3229	29.15	1/982	1/7748
SNV	Breast	DGKD_D555N_1	HLA-B18:01	NESQASSSL	0.9047	0.8414	0.1249	171.95	0.1899	29.15	1/982	1/7748
SNV	Breast	DSEL_A533V_4	HLA-B44:03	GECVQWLKW	0.9992	0.9701	0.0391	73.21	0.2603	1.58	1/982	1/7748
SNV	Breast	EPS8_H503R_1	HLA-A02:01	RLDQGEAAV	0.9924	0.8518	0.3713	6.87	0.1277	35.8	1/982	1/7748
SNV	Breast	MRPL15_Q264E_2	HLA-B44:03	REIFFGLAPGW	0.9991	0.9747	0.0529	18.16	0.1533	144.27	1/982	1/7748
SNV	Breast	MRPL15_Q264E_7	HLA-C07:01	TRKDPREIF	0.9946	0.5419	0.1285	223.99	0.1201	144.27	1/982	1/7748
SNV	Breast	MYO1D_R850Q_5	HLA-B44:03	NELKQKDKY	0.9992	0.6516	0.0469	10.07	0.124	150.08	1/982	1/7748
SNV	Breast	NPR2_S76C_8	HLA-B44:03	SELEGACCEY	0.9979	0.9622	0.0425	48.09	0.2237	5	1/982	1/7748
SNV	Breast	PDE3A_V349I_2	HLA-A02:01	AIMGEAHGL	0.9772	0.7094	0.4243	53.23	0.3104	4.32	1/982	1/7748
SNV	Breast	PXDNL_S493L_2	HLA-A02:01	SLLGVKKVSV	0.9709	0.7778	0.5004	327.72	0.587	57.98	1/982	1/7748
SNV	Breast	PXDNL_S493L_8	HLA-B18:01	YECQAVSLL	0.8903	0.7344	0.1624	214.76	0.2031	57.98	1/982	1/7748
SNV	Breast	RAE1_R356H_3	HLA-A02:01	FLHNAAEEL	0.9928	0.6915	0.2669	3.03	0.0665	49.54	1/982	1/7748
SNV	Breast	RAE1_R356H_3	HLA-C03:04	FLHNAAEEL	0.9901	0.9947	0.0836	39.57	0.1841	49.54	1/982	1/7748
SNV	Breast	RIC8A_V334L_9	HLA-A02:01	RLKESVAPL	0.9725	0.6575	0.4094	301.7	0.5736	76.1	1/982	1/7748
SNV	Breast	RIC8A_V334L_5	HLA-C03:04	SVAPLLSVL	0.9998	0.9914	0.0519	3.74	0.0377	76.1	1/982	1/7748
SNV	Breast	RND1_I217M_4	HLA-B18:01	SELMSSTF	0.9982	0.9285	0.0666	169.27	0.189	36.69	1/982	1/7748
SNV	Breast	TP53_V197G_5	HLA-A02:01	HLIRGEGNLRV	0.937	0.6467	1.2919	137.56	0.4433	82.03	1/982	2/7748
SNV	Breast	TP53_V197G_1	HLA-B44:03	GEGNLRVEY	0.9993	0.9343	0.083	2.58	0.0517	82.03	1/982	1/7748
SNV	Breast	TP53_V197G_1	HLA-B18:01	GEGNLRVEY	0.9831	0.9378	0.1624	55.83	0.1233	82.03	1/982	1/7748
SNV	Breast	TTLL4_P722L_9	HLA-C07:01	SRQKWIVKL	0.9982	0.516	0.0131	16.72	0.0334	9.54	1/982	1/7748
SNV	Breast	AIM1_P471L_2	HLA-A11:01	ALAPGDVPK	0.9986	0.5435	0.2664	8.89	0.0879	63.93	1/982	1/7748
SNV	Breast	APTX_A231T_2	HLA-C16:01	VTREHLELL	0.7286	0.9767	0.1394	157.33	0.5218	26.12	1/982	2/7748
SNV	Breast	ATF5_I269L_7	HLA-A02:01	YVKDLLLEV	0.9933	0.7472	0.1465	9.8	0.157	60.25	1/982	1/7748
SNV	Breast	ATF5_I269L_7	HLA-C03:04	YVKDLLLEV	0.817	0.9895	0.131	237.8	0.385	60.25	1/982	1/7748
SNV	Breast	ATF5_I269L_7	HLA-C16:01	YVKDLLLEV	0.8681	0.9791	0.2838	55.47	0.305	60.25	1/982	1/7748
SNV	Breast	CYP7B1_A178E_6	HLA-B58:01	TSWDTEELY	0.9328	0.948	0.1864	53.69	0.3111	9.58	1/982	1/7748
SNV	Breast	DENND5B_C1122F_4	HLA-A02:01	VLLFGENGL	0.8544	0.5407	0.9832	111.52	0.4074	3.38	1/982	1/7748
SNV	Breast	DENND5B_C1122F_3	HLA-A02:01	LLFGENGLV	0.9911	0.6671	0.1204	82.17	0.3663	3.38	1/982	1/7748
SNV	Breast	DENND5B_C1122F_9	HLA-C16:01	RGSLTVLLF	0.7583	0.9729	1.669	377.06	0.7584	3.38	1/982	1/7748
SNV	Breast	GDAP2_V387I_6	HLA-C16:01	AVKEYILVY	0.5032	0.9606	0.7526	320.83	0.7126	7.39	1/982	1/7748
SNV	Breast	GDAP2_V387I_2	HLA-C16:01	YILVYFHTL	0.6859	0.9646	0.7897	299.95	0.6934	7.39	1/982	1/7748
SNV	Breast	GRB10_F555S_1	HLA-B58:01	SSLDDGNTKF	0.9878	0.614	0.2416	212.54	0.5001	26.99	1/982	1/7748
SNV	Breast	HDAC6_R127G_5	HLA-A02:01	GLLDGCVSF	0.8548	0.618	0.9749	252.88	0.5449	14.97	1/982	1/7748
SNV	Breast	ITGA11_H275L_2	HLA-A02:01	SLDSPDLEKV	0.9895	0.5094	0.6596	46.27	0.2943	11.35	1/982	1/7748
SNV	Breast	ITGA11_H275L_9	HLA-C03:04	IVITDGESL	0.999	0.9915	0.222	25.13	0.1552	11.35	1/982	1/7748
SNV	Breast	ITGA11_H275L_9	HLA-C16:01	IVITDGESL	0.8136	0.9853	0.915	161.04	0.5274	11.35	1/982	1/7748
SNV	Breast	KCND1_R301P_4	HLA-B58:01	RVFPIFKF	0.9973	0.9342	1.6811	191.44	0.4851	2.84	1/982	1/7748
SNV	Breast	KCND1_R301P_7	HLA-B58:01	RVFRVFPIF	0.9764	0.7721	0.1269	139.08	0.4394	2.84	1/982	1/7748
SNV	Breast	KCND1_R301P_7	HLA-C16:01	RVFRVFPIF	0.7564	0.9022	1.4525	167.16	0.5364	2.84	1/982	1/7748
SNV	Breast	LARP7_S76Y_9	HLA-C16:01	YVDISLLVY	0.5414	0.92	0.6071	152.18	0.5138	44.69	1/982	1/7748
SNV	Breast	LRRC4C_P389A_4	HLA-C03:04	WITANGTVM	0.9641	0.988	0.6655	384.15	0.46	1.5	1/982	1/7748
SNV	Breast	MAPKBP1_T347S_4	HLA-C03:04	YPDSIALTF	0.9929	0.9593	0.3088	78.6	0.2495	5.59	1/982	1/7748
SNV	Breast	MAPKBP1_T347S_4	HLA-C16:01	YPDSIALTF	0.8553	0.9748	0.5676	23.55	0.1856	5.59	1/982	1/7748
SNV	Breast	PTPRJ_P1076L_3	HLA-A02:01	VLLYDISRV	0.9946	0.7453	0.1909	3.78	0.0785	13.51	1/982	1/7748
SNV	Breast	PTPRJ_P1076L_2	HLA-A02:01	LLYDISRVKL	0.99	0.5235	0.5972	20.01	0.2174	13.51	1/982	1/7748
SNV	Breast	RASGEF1B_M413I_6	HLA-B58:01	QVSEFITW	0.9967	0.9839	0.6199	192.17	0.4857	5.22	1/982	1/7748
SNV	Breast	RASGEF1B_M413I_7	HLA-B58:01	KQVSEFITW	0.9667	0.9748	0.0599	4.92	0.0871	5.22	1/982	1/7748
SNV	Breast	RASGEF1B_M413I_9	HLA-B58:01	LAKQVSEFITW	0.9997	0.9727	0.2416	395.01	0.6096	5.22	1/982	1/7748
SNV	Breast	TBC1D16_G432E_5	HLA-B58:01	VSIREEVW	0.999	0.9775	0.4744	92.14	0.382	12.94	1/982	1/7748
SNV	Breast	TP53_L111P_7	HLA-B58:01	GSYGFRPGF	0.973	0.9627	0.4929	82.06	0.3668	123.72	1/982	1/7748
SNV	Breast	TP53_L111P_7	HLA-C16:01	GSYGFRPGF	0.6678	0.9908	1.1024	47.21	0.2809	123.72	1/982	1/7748
SNV	Breast	UBA5_R17Q_7	HLA-C16:01	RVQELEQEL	0.9873	0.9786	0.4427	32.8	0.2278	16.15	1/982	1/7748
SNV	Breast	USP42_L1264V_3	HLA-B58:01	TSVETVAQF	0.9941	0.9087	0.0701	6.93	0.1137	8.75	1/982	1/7748
SNV	Breast	USP42_L1264V_3	HLA-C03:04	TSVETVAQF	0.9992	0.9372	0.1919	334.3	0.4375	8.75	1/982	1/7748
SNV	Breast	USP42_L1264V_3	HLA-C16:01	TSVETVAQF	0.8036	0.9676	0.0756	136.21	0.489	8.75	1/982	1/7748
SNV	Breast	ZNF518B_Q178L_9	HLA-C03:04	ISYTKGEFL	0.9979	0.9889	0.3596	264.41	0.3996	10.29	1/982	1/7748
SNV	Breast	ZNF518B_Q178L_9	HLA-C16:01	ISYTKGEFL	0.8996	0.9871	0.1326	16.32	0.1495	10.29	1/982	1/7748
SNV	Breast	CKAP2_L638F_1	HLA-B35:01	FPDMLKDHY	0.9985	0.7431	0.0511	1.43	0.0207	33.73	1/982	1/7748
SNV	Breast	CUL1_E241Q_6	HLA-B35:01	FLADTQRFY	0.9822	0.9496	0.5701	57.24	0.2561	89.43	1/982	1/7748
SNV	Breast	PIK3CA_E453K_3	HLA-A02:01	GLKDLLNPI	0.9672	0.5423	0.5138	157.89	0.4669	13.88	5/982	6/7748
SNV	Breast	PPRC1_H277P_8	HLA-C05:01	SIPDFPMPL	0.9587	0.7849	0.1271	208.51	0.2935	25.46	1/982	1/7748
SNV	Breast	PTDSS2_V357M_4	HLA-B35:01	FVNMGGVAM	0.9595	0.8754	0.0956	8.78	0.1198	15.18	1/982	1/7748
SNV	Breast	PTDSS2_V357M_4	HLA-C05:01	FVNMGGVAM	0.9836	0.8433	0.5179	77.51	0.2002	15.18	1/982	1/7748
SNV	Breast	RALY_D122N_4	HLA-C04:01	YRDNFYDRL	0.988	0.7541	0.1884	484.33	0.1525	44.34	1/982	1/7748
SNV	Breast	TNS3_P733A_2	HLA-C05:01	SADSVGGGL	0.9997	0.9682	0.0246	12.65	0.1018	55.14	1/982	1/7748
SNV	Breast	VWA9_G334E_6	HLA-B35:01	GPEWHEMLY	0.9795	0.9728	0.2339	7.39	0.1097	37.9	1/982	1/7748
SNV	Breast	KIF9_L231V_3	HLA-B57:01	RTVSEEKYI	0.9528	0.9583	0.8911	127.92	0.3005	7.17	1/982	1/7748
SNV	Breast	ROBO1_C147Y_11	HLA-B57:01	KSRPDEGVYVY	0.9999	0.8453	0.1224	47.97	0.2287	2.01	1/982	1/7748
SNV	Breast	YTHDC1_D313Y_9	HLA-A03:01	RGISPIVFYR	0.9053	0.6981	1.513	371.47	0.4556	58.55	1/982	1/7748
SNV	Breast	YTHDC1_D313Y_9	HLA-B57:01	RGISPIVFY	0.9735	0.9742	1.1456	82.85	0.2693	58.55	1/982	1/7748
SNV	Breast	SNX17_R345H_6	HLA-C07:01	GRGEVHLEL	0.9972	0.7398	0.112	168.17	0.1094	129.45	1/982	1/7748
SNV	Breast	CA2_Q248H_6	HLA-A30:01	NWRPAHPLK	0.8623	0.7956	0.1326	495.11	0.1749	248.59	1/982	1/7748
SNV	Breast	ERBB4_N278S_8	HLA-C16:01	TTFQLEHSF	0.6601	0.9809	0.1909	87.05	0.3967	2.32	1/982	1/7748
SNV	Breast	GALNT1_K107R_1	HLA-C16:01	RTKVYPDNL	0.8348	0.9432	1.4961	391.19	0.7688	23.15	1/982	1/7748
SNV	Breast	GBE1_D481V_6	HLA-C08:02	YAESHVQAL	0.9999	0.9183	0.0035	11.95	0.0217	9.2	1/982	1/7748
SNV	Breast	GBE1_D481V_6	HLA-C16:01	YAESHVQAL	0.992	0.962	0.0454	5.97	0.0593	9.2	1/982	1/7748
SNV	Breast	SLX4_G1349R_1	HLA-C16:01	RGHPHSSPL	0.7792	0.9854	0.2716	40.95	0.2611	4.67	1/982	1/7748
SNV	Breast	DMWD_Q643H_1	HLA-A68:01	HTGEGSWPR	0.9924	0.8838	0.0951	10.39	0.118	22.73	1/982	1/7748
SNV	Breast	DMWD_Q643H_4	HLA-B44:02	TEAHTGEGSW	0.9983	0.7796	0.0116	2.09	0.0398	22.73	1/982	1/7748
SNV	Breast	FAT2_L1347V_7	HLA-B35:03	RPSSIPVAF	0.9714	0.8958	0.038	25.91	0.0598	2.09	1/982	1/7748
SNV	Breast	FAT2_L1347V_1	HLA-C04:01	VAFDETYYSF	0.9995	0.655	1.3159	42.15	0.0524	2.09	1/982	1/7748
SNV	Breast	GFOD1_D297N_3	HLA-C05:01	FSNIPSPYL	0.9996	0.9	0.1741	5.85	0.0643	5.82	1/982	1/7748
SNV	Breast	PCDHB7_Q70H_5	HLA-C05:01	IVSDHNMQI	0.9993	0.8948	0.1799	13.74	0.1057	7.36	1/982	1/7748
SNV	Breast	PCDHB7_Q70H_4	HLA-C05:01	VSDHNMQIL	0.9999	0.9206	0.0133	7.11	0.0727	7.36	1/982	1/7748
SNV	Breast	PCDHB7_Q70H_4	HLA-C05:01	VSDHNMQILL	1	0.9452	0.1381	482.72	0.3989	7.36	1/982	1/7748
SNV	Breast	PNKD_D150V_8	HLA-A68:01	AVAVDPSVPR	0.988	0.5525	0.2924	15.66	0.1555	46.13	1/982	1/7748
SNV	Breast	PNKD_D150V_6	HLA-C05:01	AVDPSVPRA	0.9999	0.9071	0.3409	89.91	0.2123	46.13	1/982	1/7748
SNV	Breast	PNKD_D150V_6	HLA-C05:01	AVDPSVPRAV	0.9999	0.9186	0.0819	54.48	0.1756	46.13	1/982	1/7748
SNV	Breast	PSD4_F642V_9	HLA-A02:01	SLDRALRSV	0.9687	0.6091	0.4602	63.05	0.3322	42.9	1/982	1/7748
SNV	Breast	PSD4_F642V_9	HLA-C05:01	SLDRALRSV	0.9999	0.9688	0.047	59.37	0.1816	42.9	1/982	1/7748
SNV	Breast	RBM15B_I783M_9	HLA-A02:01	KLDEVTRRM	0.9883	0.8007	0.6371	28.33	0.2469	44.62	1/982	1/7748
SNV	Breast	RBM15B_I783M_9	HLA-C04:01	KLDEVTRRM	0.9998	0.8688	0.0744	207.66	0.1029	44.62	1/982	1/7748
SNV	Breast	RBM15B_I783M_9	HLA-C05:01	KLDEVTRRM	0.9999	0.9574	0.0334	1.67	0.0177	44.62	1/982	1/7748
SNV	Breast	SBF1_A1599V_2	HLA-C05:01	YVPEDAEVL	0.9779	0.8892	0.1154	147.4	0.2535	46.69	1/982	1/7748
SNV	Breast	ZSCAN26_R66G_5	HLA-A68:01	TTGPGEALSR	0.9881	0.7206	0.4121	98.64	0.3789	32.61	1/982	1/7748
SNV	Breast	DTWD2_E290D_3	HLA-C05:01	KMDLLMNSV	0.9998	0.8766	0.1573	45.15	0.1641	4.51	1/982	1/7748
SNV	Breast	EIF4G2_L96P_5	HLA-C05:01	KFDKPCLEL	0.9993	0.9591	0.1154	305.42	0.3411	236.21	1/982	1/7748
SNV	Breast	ELN_G507R_2	HLA-C07:01	VRVAPGVGV	0.9326	0.6409	0.3229	440.93	0.1658	74.97	1/982	1/7748
SNV	Breast	MAN2A1_N1125D_3	HLA-C05:01	TQDISEINL	0.9999	0.9065	0.2016	221.84	0.3007	3.75	1/982	1/7748
SNV	Breast	NME9_V248I_1	HLA-A02:01	IMGPRDPNV	0.9813	0.6517	0.5313	22.71	0.2281	2.39	1/982	2/7748
SNV	Breast	PDS5A_E924A_5	HLA-A02:01	VINDACYQV	0.9921	0.7781	0.1895	225.02	0.526	64.55	1/982	1/7748
SNV	Breast	SMPDL3A_K306E_5	HLA-C05:01	LSDKEGSPV	0.9999	0.943	0.038	338.42	0.3541	18.6	1/982	1/7748
SNV	Breast	TNS3_V294F_7	HLA-C05:01	FPDYGKFEL	0.9995	0.9621	0.2084	38.36	0.1543	73.41	1/982	1/7748
SNV	Breast	ZNF577_N55D_4	HLA-A02:01	MLEDYINLV	0.9977	0.5728	0.0844	1.74	0.0369	4.47	1/982	1/7748
SNV	Breast	ZNF577_N55D_5	HLA-A02:01	VMLEDYINLV	0.9985	0.5203	0.2758	28.75	0.2481	4.47	1/982	1/7748
SNV	Breast	ZNF577_N55D_4	HLA-C05:01	MLEDYINLV	0.9994	0.9537	0.1775	6.72	0.0707	4.47	1/982	1/7748
SNV	Breast	BRIP1_E421K_5	HLA-B35:01	FARDKLDSM	0.9133	0.851	0.279	57.21	0.2561	37.3	1/982	1/7748
SNV	Breast	BRIP1_E421K_5	HLA-C15:02	FARDKLDSM	0.9097	0.7454	0.1571	128.91	0.4392	37.3	1/982	1/7748
SNV	Breast	CDADC1_Y375S_7	HLA-B35:01	FPVGSESADF	0.9959	0.9607	0.0894	4.94	0.0901	5.6	1/982	1/7748
SNV	Breast	GIMAP5_P109L_5	HLA-A02:01	LLSALGPHV	0.9955	0.7743	0.0416	9.16	0.1517	1.69	1/982	1/7748
SNV	Breast	GIMAP5_P109L_2	HLA-A02:01	ALGPHVLLL	0.9918	0.6388	0.212	2.43	0.0543	1.69	1/982	1/7748
SNV	Breast	GIMAP5_P109L_6	HLA-A02:01	YLLSALGPHV	0.9975	0.7714	0.0764	6.85	0.1275	1.69	1/982	1/7748
SNV	Breast	GIMAP5_P109L_2	HLA-A02:01	ALGPHVLLLV	0.995	0.5882	0.3324	151.21	0.4595	1.69	1/982	1/7748
SNV	Breast	GIMAP5_P109L_6	HLA-A02:01	YLLSALGPHVL	0.9934	0.8073	1.0764	80.35	0.3634	1.69	1/982	1/7748
SNV	Breast	GIMAP5_P109L_4	HLA-C15:02	LSALGPHVL	0.9979	0.9664	0.1134	43.8	0.2531	1.69	1/982	1/7748
SNV	Breast	GIMAP5_P109L_3	HLA-C15:02	SALGPHVLL	0.9995	0.9418	0.041	7.5	0.0656	1.69	1/982	1/7748
SNV	Breast	GIMAP5_P109L_2	HLA-C15:02	ALGPHVLLL	0.964	0.9579	0.4059	79.9	0.3532	1.69	1/982	1/7748
SNV	Breast	GIMAP5_P109L_3	HLA-C15:02	SALGPHVLLL	0.9995	0.9199	0.6108	278.27	0.5956	1.69	1/982	1/7748
SNV	Breast	GPAM_L729V_7	HLA-A02:01	RLLGPLVEA	0.9975	0.675	0.3051	3.14	0.0692	6.67	1/982	1/7748
SNV	Breast	NCOA3_S542L_3	HLA-A02:01	TLLSPGPKL	0.9674	0.7875	0.5258	25.56	0.2382	78.73	1/982	1/7748
SNV	Breast	NCOA3_S542L_9	HLA-C15:02	GTSLLSTLL	0.9957	0.8967	0.4774	181.87	0.5002	78.73	1/982	1/7748
SNV	Breast	NCOA3_S542L_3	HLA-C15:02	TLLSPGPKL	0.7924	0.9461	1.1266	317.88	0.6372	78.73	1/982	1/7748
SNV	Breast	TBC1D22B_R64Q_3	HLA-B35:01	FAQNTSDAW	0.9587	0.8141	0.2233	43.42	0.2332	16.69	1/982	1/7748
SNV	Breast	TJP1_D1068N_3	HLA-B35:01	YTNQFSRNY	0.9544	0.7023	0.8271	81.49	0.288	35.73	1/982	1/7748
SNV	Breast	VPS9D1_G109V_8	HLA-B51:01	APIPQPAV	0.9955	0.9382	0.2064	73.62	0.2056	10.99	1/982	1/7748
SNV	Breast	VPS9D1_G109V_9	HLA-C15:02	AAPIPQPAV	0.998	0.9618	0.2386	438	0.7364	10.99	1/982	1/7748
SNV	Breast	VPS9D1_G109V_10	HLA-C15:02	AAAPIPQPAV	0.9996	0.9589	0.7371	282.07	0.5986	10.99	1/982	1/7748
SNV	Breast	ZKSCAN2_S199F_3	HLA-B35:01	RPFPWVPAL	0.9888	0.9539	0.1208	4.65	0.0863	7.72	1/982	1/7748
SNV	Breast	ZKSCAN2_S199F_3	HLA-B51:01	RPFPWVPAL	0.8388	0.7742	0.0974	7.12	0.0525	7.72	1/982	1/7748
SNV	Breast	ZKSCAN2_S199F_3	HLA-C15:02	RPFPWVPAL	0.5362	0.967	0.7278	48.34	0.2681	7.72	1/982	1/7748
SNV	Breast	ACADSB_V6A_6	HLA-C07:01	ARLLRGSRL	0.9886	0.7752	0.1701	293.99	0.1359	69.83	1/982	1/7748
SNV	Breast	FCRL5_D99E_8	HLA-C03:04	LSSPVHLEF	0.9987	0.9935	0.2189	126.71	0.2991	1.65	1/982	1/7748
SNV	Breast	FPR3_A245V_4	HLA-A24:02	VFAVVVASFF	0.9901	0.541	0.3252	249.47	0.5801	7.69	1/982	1/7748
SNV	Breast	FPR3_A245V_9	HLA-C07:01	SRPLRVFAV	0.916	0.6539	0.1959	197.74	0.1154	7.69	1/982	1/7748
SNV	Breast	ADCY6_K26R_10	HLA-A68:01	TAWGERNGQR	0.9579	0.682	0.9668	438.41	0.652	31.58	1/982	1/7748
SNV	Breast	AKR1C3_C154F_9	HLA-A32:01	TTWEAMEKF	0.939	0.9597	0.2236	148.51	0.1773	7.85	1/982	1/7748
SNV	Breast	ARHGAP29_D1226Y_10	HLA-B15:01	GQATGQPKEY	0.9999	0.701	0.3336	10.16	0.0966	94.47	1/982	1/7748
SNV	Breast	CENPE_N445T_10	HLA-C05:01	YADQFNIPTTI	1	0.9496	0.0726	57.93	0.1799	17.25	1/982	1/7748
SNV	Breast	CUBN_T2701R_1	HLA-B15:01	RSPNYPNAY	0.9777	0.9123	0.4806	108.16	0.2937	2.22	1/982	1/7748
SNV	Breast	DDX60L_I1326M_4	HLA-C05:01	FFDMPLPKI	0.9997	0.9557	0.1211	22.88	0.1295	9.49	1/982	1/7748
SNV	Breast	ERI2_Q125L_2	HLA-A32:01	ILQQKNIIF	0.8789	0.9262	0.7309	484.8	0.2823	19.91	1/982	1/7748
SNV	Breast	ERI2_Q125L_2	HLA-B15:01	ILQQKNIIF	0.9949	0.827	0.2325	107.33	0.293	19.91	1/982	1/7748
SNV	Breast	NDUFAB1_C65Y_6	HLA-A32:01	RVTQLYRQY	0.9561	0.8072	0.4648	299.58	0.2354	86.25	1/982	1/7748
SNV	Breast	NDUFAB1_C65Y_6	HLA-B15:01	RVTQLYRQY	0.9261	0.7026	0.4629	68.89	0.2522	86.25	1/982	1/7748
SNV	Breast	PIGQ_H256Q_4	HLA-A32:01	RLEQLTLIF	0.9755	0.975	0.4495	125.53	0.1616	20.95	1/982	1/7748
SNV	Breast	PIGQ_H256Q_4	HLA-B15:01	RLEQLTLIF	0.9489	0.8688	0.4353	368.97	0.4667	20.95	1/982	1/7748
SNV	Breast	PIGQ_H256Q_4	HLA-C05:01	RLEQLTLIF	0.9951	0.9719	1.7386	140.89	0.2488	20.95	1/982	1/7748
SNV	Breast	RAB1A_E171D_4	HLA-C03:04	MAADIKKRM	0.9994	0.9888	0.1696	77.8	0.2484	166.38	1/982	1/7748
SNV	Breast	SERINC1_F148L_5	HLA-B44:02	PEGTLTTVW	0.9361	0.5998	0.4014	68.6	0.2335	321.75	1/982	1/7748
SNV	Breast	TFB2M_R33P_3	HLA-A68:01	ATPKHLPAR	0.9256	0.5924	0.5294	217.74	0.5132	37.32	1/982	1/7748
SNV	Breast	ZNF473_H239L_9	HLA-C03:04	HTREKPTVL	0.9403	0.9862	0.1825	111.88	0.2862	9.1	1/982	1/7748
SNV	Breast	ACKR1_C276F_8	HLA-A02:01	KLLLLSTFL	0.9463	0.6562	0.1848	136.8	0.4423	17.26	1/982	1/7748
SNV	Breast	ACKR1_C276F_1	HLA-A02:01	FLAQQALDL	0.9891	0.6763	0.163	10.2	0.1602	17.26	1/982	1/7748
SNV	Breast	ACKR1_C276F_3	HLA-C03:03	STFLAQQAL	0.9972	0.9949	0.1156	22.4	0.1476	17.26	1/982	1/7748
SNV	Breast	EDA2R_S144N_7	HLA-A02:01	TLVALVNSL	0.9523	0.7415	0.4323	56.49	0.3181	1.94	1/982	1/7748
SNV	Breast	N4BP1_R395T_1	HLA-B15:01	TEFSAGTVY	0.9349	0.8928	0.2754	38.74	0.1921	30.76	1/982	1/7748
SNV	Breast	PKP4_D678N_5	HLA-C03:03	SSFDNDHKI	0.9315	0.9842	0.1195	175.36	0.3433	48.7	1/982	1/7748
SNV	Breast	ZC3H7A_A692V_1	HLA-B15:01	VQVLGNQIM	0.9893	0.893	0.259	55	0.2282	28.92	1/982	1/7748
SNV	Breast	BICC1_M360I_5	HLA-A02:01	LMFDIKEEIEV	0.999	0.5554	0.6574	72.74	0.3506	2.21	1/982	1/7748
SNV	Breast	BSDC1_V84M_8	HLA-A02:01	GLSDFLGMI	0.9876	0.6761	0.1492	18.48	0.2107	53.81	1/982	1/7748
SNV	Breast	DDR2_P750L_10	HLA-C07:01	YRIQGRAVLL	0.9994	0.7499	0.102	29.75	0.0478	4.69	1/982	1/7748
SNV	Breast	ETV1_E369Q_6	HLA-A02:01	KLIEPQEVA	0.989	0.7382	0.7411	118.27	0.4174	1.06	1/982	1/7748
SNV	Breast	MMS19_T800I_1	HLA-A02:01	ILLLWVTKA	0.9506	0.5129	0.2432	415.09	0.6344	69.02	1/982	1/7748
SNV	Breast	N4BP1_N267D_7	HLA-A02:01	VLFDPIDGL	0.9872	0.6478	0.0955	1.39	0.0166	21.11	1/982	1/7748
SNV	Breast	SLC25A13_R292W_7	HLA-A02:01	TLADIEWIA	0.9913	0.6788	0.271	9.08	0.1509	29.32	1/982	1/7748
SNV	Breast	VPS13C_Q3301E_4	HLA-A02:01	KLIEQDIDA	0.9702	0.6031	0.6539	78.9	0.361	6.2	1/982	1/7748
SNV	Breast	VPS13C_Q3301E_4	HLA-A02:01	KLIEQDIDAL	0.9951	0.7364	0.5616	5.05	0.105	6.2	1/982	1/7748
SNV	Breast	ZNF117_C42F_4	HLA-C07:01	YRKFGYENL	0.994	0.7966	0.048	43.04	0.0601	18.88	1/982	1/7748
SNV	Breast	ARID4A_K321R_8	HLA-C07:02	NFLQQLYRF	0.5453	0.9388	0.9604	498.73	0.397	6.99	1/982	1/7748
SNV	Breast	DPY19L4_A578T_7	HLA-C07:02	KRQAPVTAV	0.8043	0.9579	0.2455	221.65	0.282	69.08	1/982	1/7748
SNV	Breast	DPY19L4_A578T_6	HLA-C07:02	RQAPVTAVF	0.9909	0.9694	0.0548	201.32	0.2707	69.08	1/982	1/7748
SNV	Breast	DPY19L4_A578T_7	HLA-C07:02	KRQAPVTAVF	0.9896	0.925	0.0899	458.71	0.3847	69.08	1/982	1/7748
SNV	Breast	DUSP22_G173R_5	HLA-B08:01	LAAPRILKF	0.9827	0.5783	0.5345	301.44	0.2728	14.63	1/982	3/7748
SNV	Breast	DUSP22_G173R_5	HLA-C07:02	LAAPRILKF	0.9935	0.9401	0.3121	185.96	0.2614	14.63	1/982	1/7748
SNV	Breast	NCOR1_K1215R_2	HLA-C07:02	GRSGHILSY	0.8334	0.9248	0.0343	17.86	0.0727	52.22	1/982	1/7748
SNV	Breast	POU6F1_V93M_10	HLA-B07:02	SPPGIPPSPM	0.9986	0.504	0.0669	34.17	0.1838	6.84	1/982	1/7748
SNV	Breast	PTPRG_D131H_6	HLA-A02:01	ILLKDHYFV	0.9962	0.5815	0.0077	1.92	0.0426	3.42	1/982	1/7748
SNV	Breast	RAPH1_V665I_1	HLA-C07:02	IKYSTITRL	0.7809	0.8162	0.972	478.46	0.3909	1.43	1/982	1/7748
SNV	Breast	TGM1_G357R_9	HLA-A11:01	GTNPSAWVR	0.9965	0.6462	0.4659	33.5	0.1847	1.02	1/982	1/7748
SNV	Breast	TP53_V216M_9	HLA-C07:02	DRNTFRHSM	0.8004	0.8228	0.5694	266.43	0.3045	59.88	2/982	3/7748
SNV	Breast	TP53_V216M_5	HLA-C07:02	FRHSMVVPY	0.8633	0.8957	0.0032	54.15	0.1399	59.88	2/982	3/7748
SNV	Breast	ULK2_P575L_9	HLA-B07:02	RPGSLGTSL	0.9996	0.5755	0.0016	1.14	0.0065	22.86	1/982	1/7748
SNV	Breast	ULK2_P575L_10	HLA-B07:02	SRPGSLGTSL	0.9628	0.6495	1.5054	6.62	0.0859	22.86	1/982	1/7748
SNV	Breast	WDR66_T244A_2	HLA-C07:02	SAPVYPLTM	0.7903	0.9313	0.512	294.65	0.3194	1	1/982	1/7748
SNV	Breast	API5_I425M_9	HLA-C15:02	ITNNINVLM	0.9968	0.8633	0.1528	3.13	0.0158	112.25	1/982	1/7748
SNV	Breast	API5_I425M_9	HLA-C03:03	ITNNINVLM	0.9982	0.9813	0.3896	440.98	0.4823	112.25	1/982	1/7748
SNV	Breast	BRD8_R1161Q_2	HLA-B15:01	GQIRTMAQF	0.9996	0.7341	0.0781	4.71	0.0489	22.17	1/982	1/7748
SNV	Breast	DALRD3_R409H_1	HLA-B15:01	HLATLFESY	0.9996	0.8641	0.0306	7.05	0.0669	37.21	1/982	1/7748
SNV	Breast	DOCK7_S1352A_5	HLA-C15:02	FTDLAVLQL	0.9974	0.931	0.0125	6.02	0.0514	12.14	1/982	1/7748
SNV	Breast	DOCK7_S1352A_1	HLA-C15:02	AVLQLNRLL	0.9967	0.8839	0.6362	246.5	0.5684	12.14	1/982	1/7748
SNV	Breast	DOCK7_S1352A_5	HLA-C03:03	FTDLAVLQL	0.998	0.9969	0.083	132.65	0.3051	12.14	1/982	1/7748
SNV	Breast	GDI1_G160R_1	HLA-C15:02	RVDPQTTSM	0.9965	0.7979	0.0549	1.48	0.0044	234.95	1/982	1/7748
SNV	Breast	GDI1_G160R_1	HLA-C03:03	RVDPQTTSM	0.9971	0.9786	0.0964	3.96	0.0393	234.95	1/982	1/7748
SNV	Breast	IL17RC_A552E_4	HLA-C15:02	FAAELSLIL	0.9988	0.9405	0.0354	12.04	0.096	17.42	1/982	1/7748
SNV	Breast	IL17RC_A552E_6	HLA-C03:03	LLFAAELSL	0.9893	0.9939	0.7719	244.15	0.3887	17.42	1/982	1/7748
SNV	Breast	IL17RC_A552E_4	HLA-C03:03	FAAELSLIL	0.9997	0.9946	0.0031	1.78	0.0135	17.42	1/982	1/7748
SNV	Breast	NBPF12_E125Q_4	HLA-C15:02	SLNQHLQAL	0.9388	0.8269	0.5941	232.58	0.5553	1.75	2/982	2/7748
SNV	Breast	NBPF12_E125Q_4	HLA-C03:03	SLNQHLQAL	0.9761	0.9916	0.2749	225.42	0.3777	1.75	2/982	3/7748
SNV	Breast	SAMD9_T890N_4	HLA-B15:01	IMKNNFNKEY	0.9999	0.8638	0.3726	69.62	0.2531	9.82	1/982	1/7748
SNV	Breast	TMCO3_R639W_5	HLA-C15:02	GVISWEVYL	0.9983	0.9307	1.5015	363.13	0.6809	37.37	1/982	1/7748
SNV	Breast	TMCO3_R639W_3	HLA-C15:02	ISWEVYLLI	0.9978	0.9029	0.3009	161.7	0.4793	37.37	1/982	1/7748
SNV	Breast	TRIOBP_R727W_2	HLA-A31:01	RWDNPRASSR	0.9099	0.8588	1.2595	410.59	0.3953	1.72	1/982	1/7748
SNV	Breast	ZNF160_R332W_8	HLA-A31:01	NSYLATHWR	0.9666	0.5865	0.0902	389.37	0.3877	9.73	1/982	1/7748
SNV	Breast	ZSCAN32_K653R_1	HLA-A31:01	RTHTGEKPYR	0.9955	0.5054	0.3076	49.47	0.1469	3.69	1/982	1/7748
SNV	Breast	ZSCAN32_K653R_1	HLA-B15:01	RTHTGEKPY	0.9961	0.9362	0.2783	62.33	0.2417	3.69	1/982	1/7748
SNV	Breast	ALDH16A1_R334Q_7	HLA-B27:05	GRLRSGQGL	0.9994	0.7814	0.3341	2.36	0.0754	27.71	1/982	1/7748
SNV	Breast	ANO8_E116Q_7	HLA-C02:02	FVTATYQSL	0.8163	0.9562	0.2657	249.86	0.3031	11.23	1/982	1/7748
SNV	Breast	ARHGEF9_N335K_3	HLA-B27:05	GRKQQRVFF	0.9986	0.8057	0.3341	47.5	0.3279	11.2	1/982	1/7748
SNV	Breast	ARHGEF9_N335K_3	HLA-C07:02	GRKQQRVFF	0.8087	0.9185	0.2575	281.14	0.3125	11.2	1/982	1/7748
SNV	Breast	ATP7A_M1188I_5	HLA-B27:05	NREWIIRNGL	0.9941	0.7876	0.8974	165.49	0.4635	16.01	1/982	1/7748
SNV	Breast	B2M_R3C_8	HLA-C02:02	SVALAVLAL	0.9415	0.9852	0.3409	414.16	0.4171	2584.76	1/982	1/7748
SNV	Breast	B4GALT5_E349Q_1	HLA-B27:05	QRQGLDGLNNL	1	0.5863	0.395	256.77	0.5145	328.59	1/982	1/7748
SNV	Breast	BLM_S1280L_7	HLA-C02:02	YGAEVILVL	0.8858	0.9822	0.3539	70.45	0.1314	3.39	1/982	1/7748
SNV	Breast	CCDC88A_S1489F_3	HLA-B27:05	RRFMSMNDL	0.9997	0.8622	0.2829	2.22	0.0715	8.47	1/982	1/7748
SNV	Breast	CCDC88A_S1489F_3	HLA-C07:02	RRFMSMNDL	0.7937	0.8931	0.2011	76.45	0.1692	8.47	1/982	1/7748
SNV	Breast	DCHS1_D552N_3	HLA-C02:02	ATNGGLPPL	0.7696	0.9681	0.1988	228.04	0.2875	9.7	1/982	1/7748
SNV	Breast	DDB1_R50W_7	HLA-A02:01	VTAEGLWPV	0.9797	0.7608	0.0703	6.12	0.119	109.55	1/982	1/7748
SNV	Breast	DDB1_R50W_3	HLA-A02:01	GLWPVKEVGM	0.9169	0.5174	1.0335	99.86	0.3913	109.55	1/982	1/7748
SNV	Breast	DSE_S897F_3	HLA-A02:01	SLFASYTRL	0.9575	0.6624	0.1811	16.58	0.2015	9.74	1/982	1/7748
SNV	Breast	DSE_S897F_7	HLA-B27:05	SRAPSLFASY	0.9999	0.923	0.0297	2.69	0.0849	9.74	1/982	1/7748
SNV	Breast	DSE_S897F_2	HLA-C07:02	LFASYTRLF	0.6665	0.921	0.5513	255.88	0.2989	9.74	1/982	1/7748
SNV	Breast	DYNC2H1_L3636V_9	HLA-A02:01	TLKIALPSV	0.9401	0.6921	0.4853	113.78	0.4108	5.69	1/982	1/7748
SNV	Breast	DYNC2H1_L3636V_5	HLA-A02:01	ALPSVYQTL	0.9644	0.6941	0.4044	134.13	0.439	5.69	1/982	1/7748
SNV	Breast	ENPP2_S395F_3	HLA-B27:05	IRFKFSNNAK	0.9998	0.7461	0.3341	316.91	0.5419	25.64	1/982	1/7748
SNV	Breast	ENPP2_S395F_3	HLA-B27:05	IRFKFSNNAKY	1	0.6556	0.0641	359.95	0.5585	25.64	1/982	1/7748
SNV	Breast	ERBB3_L431F_7	HLA-B27:05	NRGFSLFIMK	0.9996	0.9375	1.0445	218.37	0.4943	451.3	1/982	1/7748
SNV	Breast	ERBB3_L431F_9	HLA-C07:02	LYNRGFSLF	0.8324	0.9437	0.1449	134.78	0.2257	451.3	1/982	1/7748
SNV	Breast	FOPNL_H48N_4	HLA-A02:01	SLSNENLLI	0.9764	0.6217	0.5114	86.02	0.3722	99.01	1/982	1/7748
SNV	Breast	FOXN3_S361L_2	HLA-A02:01	SLADDHYEF	0.9178	0.6667	1.095	94.88	0.3848	28.52	1/982	1/7748
SNV	Breast	HECW2_Q1242H_1	HLA-B27:05	HRNKLYVTF	0.9998	0.7364	0.0902	1.28	0.0207	5.07	1/982	1/7748
SNV	Breast	HECW2_Q1242H_1	HLA-C07:02	HRNKLYVTF	0.9591	0.7312	0.0262	5.27	0.0198	5.07	1/982	1/7748
SNV	Breast	KDM6B_E1346K_1	HLA-A02:01	KLLKLPAFM	0.9359	0.6661	0.3359	65.9	0.3379	53.17	1/982	1/7748
SNV	Breast	KDM6B_E1346K_9	HLA-B27:05	KRWKPQLQK	0.9996	0.7513	0.0537	2.08	0.0661	53.17	1/982	1/7748
SNV	Breast	KDM6B_E1346K_10	HLA-B27:05	AKRWKPQLQK	0.999	0.6114	1.5328	9.34	0.1892	53.17	1/982	1/7748
SNV	Breast	KDM6B_E1346K_9	HLA-B27:05	KRWKPQLQKL	0.9999	0.8597	0.0194	1.74	0.0491	53.17	1/982	1/7748
SNV	Breast	KDM6B_E1346K_9	HLA-B27:05	KRWKPQLQKLL	1	0.8594	0.0421	6.89	0.165	53.17	1/982	1/7748
SNV	Breast	KDM6B_E1346K_8	HLA-C07:02	RWKPQLQKL	0.5818	0.8866	0.2626	272.69	0.308	53.17	1/982	1/7748
SNV	Breast	KIAA2022_Q594H_1	HLA-C07:02	HRNTNTDSI	0.7959	0.9303	0.6168	485.31	0.393	2.1	1/982	1/7748
SNV	Breast	LAMA3_M1860I_6	HLA-A02:01	GLLEQIRHM	0.9877	0.679	0.5616	12.86	0.1791	19.5	1/982	1/7748
SNV	Breast	LRIG3_E558K_7	HLA-C07:02	LRAQGGKVM	0.9467	0.9772	0.2671	140.22	0.23	25.53	1/982	1/7748
SNV	Breast	LRIG3_E558K_1	HLA-C02:02	KVMEYTTIL	0.8993	0.9735	0.1447	12.81	0.0263	25.53	1/982	1/7748
SNV	Breast	MB21D1_F433L_6	HLA-C07:02	KHLDKLSSY	0.8621	0.7736	0.0435	208.95	0.2751	4.71	1/982	1/7748
SNV	Breast	MED12_K1412N_1	HLA-C02:02	NTKPVLSSL	0.9357	0.9811	0.0714	496.04	0.4689	31.13	1/982	1/7748
SNV	Breast	METTL17_E152K_5	HLA-C02:02	LSYTKGLSL	0.9722	0.9682	0.0954	77.07	0.1373	16.13	1/982	1/7748
SNV	Breast	MOGS_Q670E_6	HLA-B07:02	KPRPPEGL	0.9997	0.5819	0.1449	11.38	0.1263	101.93	1/982	1/7748
SNV	Breast	MOGS_Q670E_6	HLA-B07:02	KPRPPEGLV	0.9985	0.5761	0.0297	2.68	0.0466	101.93	1/982	1/7748
SNV	Breast	MOGS_Q670E_4	HLA-B07:02	RPPEGLVRV	0.9825	0.6662	0.275	241	0.3377	101.93	1/982	1/7748
SNV	Breast	MRPL53_E24Q_9	HLA-B27:05	VRVQFCPFQK	0.9998	0.5793	0.6148	59.05	0.3511	8.57	1/982	1/7748
SNV	Breast	MRS2_E267Q_10	HLA-A02:01	ILDEEELLEQL	0.9991	0.7438	0.7751	491.35	0.6716	28.88	1/982	1/7748
SNV	Breast	MTHFD1L_E404Q_7	HLA-B27:05	VRLSVLQRL	0.9999	0.8666	0.1303	1.72	0.048	10.29	1/982	1/7748
SNV	Breast	MTHFD1L_E404Q_7	HLA-C07:02	VRLSVLQRL	0.9774	0.9592	0.1285	26.63	0.0915	10.29	1/982	1/7748
SNV	Breast	MVP_Q170H_3	HLA-B27:05	IRHNQALRL	0.9994	0.7854	0.2929	18.65	0.2425	110.79	1/982	1/7748
SNV	Breast	MVP_Q170H_3	HLA-C07:02	IRHNQALRL	0.8386	0.9218	0.0926	7.8	0.0369	110.79	1/982	1/7748
SNV	Breast	NDFIP2_L315V_8	HLA-B27:05	FRGFVNYVK	0.9985	0.9222	0.4901	297.28	0.5335	17.59	1/982	1/7748
SNV	Breast	NRXN3_M373I_6	HLA-B27:05	GRVKLIVNL	0.9999	0.8788	0.2193	1.13	0.0085	4.65	1/982	1/7748
SNV	Breast	NRXN3_M373I_6	HLA-C07:02	GRVKLIVNL	0.9563	0.8052	0.2181	117.55	0.211	4.65	1/982	1/7748
SNV	Breast	NUAK2_S377Y_6	HLA-B27:05	ARASMYDWL	0.993	0.8946	0.6419	60.9	0.3544	15.1	1/982	1/7748
SNV	Breast	NUAK2_S377Y_6	HLA-B27:05	ARASMYDWLR	0.9996	0.7493	0.6617	255.81	0.514	15.1	1/982	1/7748
SNV	Breast	PIEZO2_I951M_2	HLA-A02:01	IMWVSVKEV	0.9923	0.8515	0.3516	90.72	0.379	4.7	1/982	1/7748
SNV	Breast	PPP2R3C_F228L_2	HLA-A02:01	FLFLDPLRT	0.9797	0.8227	0.4602	8.94	0.1497	13.93	1/982	1/7748
SNV	Breast	PRSS23_S211L_7	HLA-C02:02	GANDSTLAM	0.6917	0.9728	0.0793	16.53	0.0353	34.18	1/982	1/7748
SNV	Breast	PRSS23_S211L_1	HLA-C02:02	LAMPEQMKF	0.8	0.9787	0.0346	67.53	0.1286	34.18	1/982	1/7748
SNV	Breast	RFX1_E447Q_7	HLA-A02:01	WLLDNYQTA	0.9907	0.8179	0.1425	9.25	0.1524	12.71	1/982	1/7748
SNV	Breast	RGS14_L558F_9	HLA-B07:02	AAQPIGGSF	0.8033	0.5575	0.5443	379.33	0.3776	9.23	1/982	1/7748
SNV	Breast	RGS14_L558F_9	HLA-C02:02	AAQPIGGSF	0.763	0.9891	0.066	110.36	0.1713	9.23	1/982	1/7748
SNV	Breast	RNASEH1_R23G_5	HLA-B27:05	RRGSGGFGM	0.9989	0.6404	0.1641	2.16	0.0696	31.72	1/982	1/7748
SNV	Breast	RNASEH1_R23G_5	HLA-B27:05	RRGSGGFGMF	0.9999	0.7655	0.1549	7.09	0.1669	31.72	1/982	1/7748
SNV	Breast	RNASEH1_R23G_5	HLA-B27:05	RRGSGGFGMFY	0.9999	0.8102	0.0273	48.31	0.3297	31.72	1/982	1/7748
SNV	Breast	RNASEH1_R23G_5	HLA-C07:02	RRGSGGFGM	0.7591	0.9609	0.2626	277.49	0.3105	31.72	1/982	1/7748
SNV	Breast	ROCK2_R1364T_6	HLA-B27:05	ARSSPTTSM	0.9994	0.7495	0.1641	4.41	0.1325	41.22	1/982	1/7748
SNV	Breast	ROCK2_R1364T_6	HLA-C07:02	ARSSPTTSM	0.8666	0.9375	0.0343	23.89	0.0854	41.22	1/982	1/7748
SNV	Breast	RPS15A_M42I_8	HLA-B27:05	VRFLTVMIK	0.9995	0.865	0.3224	7.83	0.1739	397.13	1/982	1/7748
SNV	Breast	S1PR3_I90M_9	HLA-A02:01	ALCDLLAGM	0.9811	0.7586	0.1895	64.17	0.3345	30.21	1/982	2/7748
SNV	Breast	S1PR3_I90M_5	HLA-A02:01	LLAGMAYKV	0.9958	0.6779	0.0169	4.35	0.0935	30.21	1/982	2/7748
SNV	Breast	S1PR3_I90M_1	HLA-C02:02	MAYKVNILM	0.8678	0.9909	0.0126	25.37	0.0576	30.21	1/982	1/7748
SNV	Breast	SAMD9L_H741Y_2	HLA-C07:02	YYHPGCGGTTL	0.9702	0.9815	0.2811	306.94	0.3254	73.81	1/982	2/7748
SNV	Breast	SLFN12L_L240V_2	HLA-C07:02	IVPQYVSAF	0.5319	0.9255	1.643	487.05	0.3936	3.31	1/982	1/7748
SNV	Breast	SOS1_D1145N_7	HLA-A02:01	SLTKGTNEV	0.9453	0.6135	0.4576	31.38	0.2564	40.64	1/982	1/7748
SNV	Breast	SPHK2_L425F_7	HLA-A02:01	SVSDLPFPL	0.9799	0.6924	0.1055	66.72	0.3395	8.66	1/982	1/7748
SNV	Breast	SPHK2_L425F_3	HLA-B07:02	LPFPLPQPAL	0.9953	0.6267	0.0872	6.39	0.0834	8.66	1/982	1/7748
SNV	Breast	SPHK2_L425F_9	HLA-B27:05	HRSVSDLPF	0.9962	0.8281	0.3583	226.62	0.4985	8.66	1/982	1/7748
SNV	Breast	SPHK2_L425F_7	HLA-C02:02	SVSDLPFPL	0.9509	0.9307	0.1487	100.96	0.1599	8.66	1/982	1/7748
SNV	Breast	SYCP2_F1414L_9	HLA-B27:05	SRIKKLDKL	0.9995	0.8792	0.23	11.66	0.2074	11.74	1/982	1/7748
SNV	Breast	SYCP2_F1414L_9	HLA-B27:05	SRIKKLDKLQF	1	0.8289	0.0729	57.87	0.3489	11.74	1/982	1/7748
SNV	Breast	SYCP2_F1414L_9	HLA-C07:02	SRIKKLDKL	0.7993	0.8608	0.0606	37.35	0.1116	11.74	1/982	1/7748
SNV	Breast	SYNE2_E5482K_7	HLA-B27:05	QRAAYLKKM	0.9998	0.708	0.2732	90.83	0.3969	22.76	1/982	1/7748
SNV	Breast	SYNE2_E5482K_5	HLA-C07:02	AAYLKKMLL	0.8575	0.9487	1.46	448.63	0.3814	22.76	1/982	1/7748
SNV	Breast	TBC1D15_L463V_6	HLA-A02:01	DLLSPVLYV	0.9717	0.5965	0.672	114.94	0.4125	24.77	1/982	1/7748
SNV	Breast	TBC1D15_L463V_5	HLA-A02:01	LLSPVLYVM	0.9833	0.6866	0.1104	100.1	0.3917	24.77	1/982	1/7748
SNV	Breast	TBC1D15_L463V_1	HLA-A02:01	VLYVMENEV	0.9892	0.5115	0.6436	33.96	0.2641	24.77	1/982	1/7748
SNV	Breast	TBC1D15_L463V_5	HLA-C02:02	LLSPVLYVM	0.6535	0.9736	0.6315	310.68	0.3505	24.77	1/982	1/7748
SNV	Breast	TNKS1BP1_D180E_1	HLA-B27:05	ERLWGSRLTF	1	0.8023	0.199	8.42	0.18	240.25	1/982	1/7748
SNV	Breast	TNRC6C_D1019H_3	HLA-A02:01	FLHKDGGLV	0.9411	0.5569	0.157	346.72	0.5961	47.29	1/982	1/7748
SNV	Breast	TUBB3_E325Q_1	HLA-C02:02	QVDEQMLAI	0.6732	0.9777	0.9925	470.26	0.4536	3	1/982	1/7748
SNV	Breast	UNC119B_I91M_1	HLA-C07:02	MYSIDFTRF	0.7839	0.9351	0.4255	97.9	0.1921	29.4	1/982	1/7748
SNV	Breast	USP34_S2255L_7	HLA-B27:05	YKFDVSLEL	0.981	0.9377	1.1566	69.97	0.3691	34.19	1/982	1/7748
SNV	Breast	USP34_S2255L_10	HLA-B27:05	GREYKFDVSL	0.9982	0.8805	1.0581	2.88	0.0903	34.19	1/982	1/7748
SNV	Breast	USP34_S2255L_7	HLA-C07:02	YKFDVSLEL	0.8798	0.9362	0.1256	13.44	0.0606	34.19	1/982	1/7748
SNV	Breast	USP34_S2255L_7	HLA-C02:02	YKFDVSLEL	0.7566	0.9812	1.3409	106.39	0.1666	34.19	1/982	1/7748
SNV	Breast	VCAN_P1204A_2	HLA-C07:02	VASDITTAF	0.9156	0.9286	0.5513	370.19	0.3531	139.29	1/982	1/7748
SNV	Breast	VCAN_P1204A_2	HLA-C02:02	VASDITTAF	0.7389	0.9622	0.002	7.74	0.0113	139.29	1/982	1/7748
SNV	Breast	WASF1_V78L_4	HLA-A02:01	RLSLSVTQL	0.9589	0.6338	0.3735	462.68	0.6583	4.61	1/982	1/7748
SNV	Breast	WDFY3_M1890I_4	HLA-A02:01	SMWISPDFL	0.9157	0.6942	0.1909	92.55	0.3816	19.66	1/982	1/7748
SNV	Breast	XRCC4_R275Q_4	HLA-B27:05	RRQQMQRNL	0.9996	0.6661	0.3465	124.15	0.4316	12.14	1/982	1/7748
SNV	Breast	XRCC4_R275Q_4	HLA-C07:02	RRQQMQRNL	0.9207	0.9539	0.3508	132.09	0.2236	12.14	1/982	1/7748
SNV	Breast	ZFC3H1_D936G_1	HLA-B27:05	GRFGPNKM	0.9999	0.9252	0.8524	73.57	0.3745	16.67	1/982	1/7748
SNV	Breast	ZFC3H1_D936G_1	HLA-B27:05	GRFGPNKMM	0.9998	0.914	0.2616	1.23	0.0168	16.67	1/982	1/7748
SNV	Breast	ZFC3H1_D936G_1	HLA-B27:05	GRFGPNKMMR	0.9999	0.8749	0.1113	2.24	0.072	16.67	1/982	1/7748
SNV	Breast	ZFC3H1_D936G_1	HLA-B27:05	GRFGPNKMMRL	1	0.8915	0.0061	1.61	0.0433	16.67	1/982	1/7748
SNV	Breast	ZFC3H1_D936G_1	HLA-C07:02	GRFGPNKMM	0.7873	0.9812	0.1285	68.89	0.1606	16.67	1/982	1/7748
SNV	Breast	ZNF585B_L733F_9	HLA-C02:02	KAFSNRSNF	0.7594	0.9594	0.0916	335.37	0.3671	4.48	1/982	1/7748
SNV	Breast	ZNF597_T424M_9	HLA-B27:05	KRTHIKNTM	0.9997	0.8847	0.1914	29.14	0.2802	9.5	3/982	3/7748
SNV	Breast	ZNF597_T424M_9	HLA-B27:05	KRTHIKNTM	0.9997	0.8847	0.1914	29.14	0.2802	9.5	3/982	3/7748
SNV	Breast	ZNF597_T424M_9	HLA-B27:05	KRTHIKNTM	0.9997	0.8847	0.1914	29.14	0.2802	9.5	3/982	3/7748
SNV	Breast	ZNF597_T424M_9	HLA-C07:02	KRTHIKNTM	0.9356	0.9271	0.1019	180.4	0.2578	9.5	3/982	3/7748
SNV	Breast	ZNF597_T424M_9	HLA-C07:02	KRTHIKNTM	0.9356	0.9271	0.1019	180.4	0.2578	9.5	3/982	3/7748
SNV	Breast	ZNF597_T424M_9	HLA-C07:02	KRTHIKNTM	0.9356	0.9271	0.1019	180.4	0.2578	9.5	3/982	3/7748
SNV	Breast	ZNF821_E357Q_4	HLA-B27:05	RRLQKMDMM	0.9998	0.6314	0.252	6.89	0.1649	7.08	1/982	1/7748
SNV	Breast	ZNF821_E357Q_4	HLA-B27:05	RRLQKMDMML	0.9999	0.6712	0.1303	11.63	0.2072	7.08	1/982	1/7748
SNV	Breast	ZNF821_E357Q_4	HLA-C07:02	RRLQKMDMM	0.9244	0.7803	0.2351	74.24	0.1667	7.08	1/982	1/7748
SNV	Breast	ABL2_L1069V_9	HLA-A11:01	GTAGTKVAVRK	0.9992	0.5266	0.4969	109.86	0.3268	10.37	1/982	1/7748
SNV	Breast	CTNND2_C964Y_10	HLA-B35:01	MSDDTVTAVY	0.9209	0.8573	0.2889	161.3	0.3564	2.31	1/982	1/7748
SNV	Breast	ERLIN2_N182Y_8	HLA-B35:01	IPEAIRRYY	0.9953	0.8183	0.1506	4.51	0.0845	50.97	1/982	1/7748
SNV	Breast	FAM200B_T301A_8	HLA-A26:01	ITSDGTAAM	0.634	0.6568	0.0359	193.33	0.1665	9.78	1/982	1/7748
SNV	Breast	FAM200B_T301A_8	HLA-B35:01	ITSDGTAAM	0.8308	0.6677	0.205	58.46	0.258	9.78	1/982	1/7748
SNV	Breast	HEATR3_A629P_2	HLA-B35:01	SPLKEFQPVF	0.9839	0.9239	0.4404	348.86	0.4436	20.94	1/982	1/7748
SNV	Breast	NUP188_D899V_7	HLA-A26:01	DAAAIRVAF	0.9969	0.7089	0.0853	140.4	0.1439	22.63	1/982	1/7748
SNV	Breast	NUP188_D899V_7	HLA-B35:01	DAAAIRVAF	0.9944	0.9115	0.0594	1.91	0.0349	22.63	1/982	1/7748
SNV	Breast	PADI2_D565Y_1	HLA-B35:01	YIIDLPALF	0.991	0.7006	0.0879	13.92	0.1542	4.23	1/982	1/7748
SNV	Breast	PSEN2_I259L_6	HLA-B35:01	VILGALSVY	0.9498	0.8623	0.4335	459.79	0.4785	23.59	1/982	1/7748
SNV	Breast	SALL4_D167Y_9	HLA-B35:01	TALPPTPQY	0.9969	0.8959	0.0357	1.45	0.0215	5.7	1/982	1/7748
SNV	Breast	SALL4_D167Y_6	HLA-B35:01	PPTPQYISY	0.8991	0.536	0.1684	17.1	0.1666	5.7	1/982	1/7748
SNV	Breast	SALL4_D167Y_10	HLA-B35:01	ETALPPTPQY	0.95	0.6302	1.6584	55.57	0.2534	5.7	1/982	1/7748
SNV	Breast	SALL4_D167Y_7	HLA-B35:01	LPPTPQYISY	0.9748	0.6605	0.182	6.73	0.1042	5.7	1/982	1/7748
SNV	Breast	SMPDL3B_L70V_3	HLA-B35:01	WAVINSSIY	0.9956	0.8438	0.0393	13.41	0.152	18.79	1/982	1/7748
SNV	Breast	SMPDL3B_L70V_5	HLA-B35:01	SPWAVINSSIY	0.9934	0.8056	0.3155	412.33	0.4647	18.79	1/982	1/7748
SNV	Breast	SULF1_S764Y_8	HLA-B35:01	APFWNLGYF	0.9799	0.9243	0.0853	115.85	0.3225	41.73	1/982	1/7748
SNV	Breast	TRRAP_S213P_2	HLA-B35:01	HPIIPRGSL	0.9895	0.9127	0.2574	118.08	0.3244	25.58	1/982	1/7748
SNV	Breast	UBA6_K991N_6	HLA-B35:01	VVQGVNMLY	0.9364	0.8906	0.1574	91.57	0.2986	13.73	1/982	1/7748
SNV	Breast	ZFYVE26_S1291Y_1	HLA-B35:01	YPRDSSLPAL	0.9709	0.5094	0.314	40.02	0.2267	5.78	1/982	1/7748
SNV	Breast	ZNF41_I763F_9	HLA-C04:01	AFTDRSNLF	0.8001	0.7139	0.3824	131.93	0.0809	18.96	1/982	1/7748
SNV	Breast	AFF4_R258W_1	HLA-B07:02	WPMDGQESM	0.9782	0.5149	0.0899	7.71	0.0946	160.51	1/982	1/7748
SNV	Breast	EHD1_H307Y_7	HLA-C07:02	ARLAKVYAY	0.8751	0.9453	0.0638	14.6	0.0643	46.03	1/982	1/7748
SNV	Breast	EHD1_H307Y_2	HLA-C07:02	VYAYIISSL	0.5334	0.8715	0.7472	20.23	0.0773	46.03	1/982	1/7748
SNV	Breast	EHD1_H307Y_7	HLA-C07:01	ARLAKVYAY	0.997	0.6846	0.0569	53.09	0.0675	46.03	1/982	1/7748
SNV	Breast	EMB_S324C_9	HLA-B07:02	VPRHRKNECL	0.9924	0.5432	0.1735	398.91	0.3821	9.8	1/982	1/7748
SNV	Breast	KMT2C_K4499R_6	HLA-C07:02	MFFKDRTML	0.5989	0.9376	0.3713	44.72	0.1234	64.19	1/982	1/7748
SNV	Breast	SCFD2_I293F_2	HLA-C07:02	KFISALPQL	0.6033	0.9451	0.2181	88.54	0.1824	29.59	1/982	1/7748
SNV	Breast	STON2_D551V_8	HLA-B08:01	AVQDRLMVL	0.8957	0.5892	0.0655	16.02	0.0561	34.36	1/982	1/7748
SNV	Breast	STON2_D551V_8	HLA-C07:02	AVQDRLMVL	0.8239	0.9779	1.3525	436.13	0.3773	34.36	1/982	1/7748
SNV	Breast	ZEB1_R952Q_7	HLA-B08:01	HLIEHMQL	0.9565	0.7947	0.6891	369.51	0.2945	19.77	1/982	1/7748
SNV	Breast	AK9_Q122K_3	HLA-C03:04	LSKDAMTTL	0.9994	0.9392	0.0645	22.55	0.1481	3.49	1/982	1/7748
SNV	Breast	AKAP9_Q1130E_4	HLA-C03:04	HVDEVREYM	0.9979	0.9898	0.1349	155.61	0.3269	22.11	1/982	1/7748
SNV	Breast	ALMS1_L1027Q_7	HLA-C03:04	YATEKAQKV	0.995	0.9725	0.0351	142.94	0.3153	14.23	1/982	1/7748
SNV	Breast	ANLN_E657D_5	HLA-B07:02	VPRADSGDSL	0.9987	0.7084	0.0906	2.11	0.035	48.46	1/982	1/7748
SNV	Breast	ARMC8_L418V_9	HLA-A02:01	SLSRSVQQV	0.9802	0.5224	0.2478	70.78	0.3471	13.15	1/982	1/7748
SNV	Breast	BIRC6_V1009F_5	HLA-A02:01	GISGFDLLV	0.9747	0.7258	0.292	44.93	0.2914	33.13	1/982	1/7748
SNV	Breast	BTG3_A111V_8	HLA-C07:02	RYGEKNNVF	0.5239	0.9639	0.1184	45.69	0.1247	126.07	1/982	1/7748
SNV	Breast	C16orf62_L636F_2	HLA-C07:02	YFINGFIKM	0.6695	0.8598	0.1256	6.71	0.0316	13.11	1/982	1/7748
SNV	Breast	EHHADH_V675A_8	HLA-C03:04	STVGLPTAL	0.9992	0.9797	0.0241	4.98	0.0496	1.07	1/982	1/7748
SNV	Breast	ELL3_S325N_3	HLA-C03:04	TANQRFIEL	0.9998	0.989	0.0866	6.91	0.0626	12.94	1/982	1/7748
SNV	Breast	IKBKAP_Q1059K_10	HLA-A03:01	RTLAGKLVEK	0.9994	0.6279	0.0745	3.61	0.0356	25.47	1/982	1/7748
SNV	Breast	KBTBD3_T466I_2	HLA-C03:04	IIDAFNPSL	0.9981	0.9897	0.0866	93.71	0.2677	1.87	1/982	1/7748
SNV	Breast	MUC16_M8093L_9	HLA-C03:04	SPMVITSTL	0.9952	0.9756	1.4321	125.55	0.2981	2.32	1/982	1/7748
SNV	Breast	MYCT1_S112Y_1	HLA-C07:02	YRSSYTHGL	0.8681	0.8416	0.0047	3.34	0.0103	4.74	1/982	1/7748
SNV	Breast	PAPD5_Q579L_10	HLA-B07:02	GPVSSSSATL	0.9957	0.5306	0.0633	18.6	0.1513	13.65	1/982	1/7748
SNV	Breast	PDZD8_L755F_5	HLA-A02:01	YLSKFRLEA	0.9909	0.5341	0.0914	241.29	0.5373	17.28	1/982	1/7748
SNV	Breast	PLCB1_L117F_4	HLA-C03:04	ISHFNLVAF	0.9969	0.9966	0.1511	259.42	0.397	1.09	1/982	1/7748
SNV	Breast	PLCB1_N118Y_1	HLA-A02:01	YLVAFQEEV	0.9985	0.8525	0.0169	1.51	0.0227	1.09	1/982	1/7748
SNV	Breast	TMED10_A80S_5	HLA-C03:04	ITDSSGHIL	0.9963	0.9705	0.0734	210.97	0.3686	169.32	1/982	1/7748
SNV	Breast	TNPO1_P887S_8	HLA-C07:02	FSDQFPLSL	0.8485	0.9416	0.2575	294.05	0.3191	20.88	1/982	1/7748
SNV	Breast	TNPO1_P887S_8	HLA-C03:04	FSDQFPLSL	0.9994	0.9803	0.0118	8.54	0.0725	20.88	1/982	1/7748
SNV	Breast	TP53_L194R_8	HLA-A02:01	GLAPPQHRI	0.982	0.7542	0.6863	19.25	0.2142	161.13	3/982	8/7748
SNV	Breast	TYW5_D165N_3	HLA-A02:01	VMNNLLIQV	0.9975	0.5753	0.132	3.39	0.0732	3.83	1/982	2/7748
SNV	Breast	TYW5_D165N_7	HLA-C07:02	THYDVMNNL	0.5524	0.9304	0.2626	51.94	0.1362	3.83	1/982	1/7748
SNV	Breast	TYW5_D165N_6	HLA-C07:02	HYDVMNNLL	0.9219	0.8438	0.0791	188.28	0.2628	3.83	1/982	1/7748
SNV	Breast	ZNF200_D236H_3	HLA-C03:04	YVHISIIAL	0.9953	0.9788	0.0253	3.69	0.0373	5.07	1/982	1/7748
SNV	Breast	ZNF283_N413K_4	HLA-C03:04	KAFKCGSSL	0.9978	0.9776	0.0035	34.26	0.1738	7.62	1/982	1/7748
SNV	Breast	AEBP1_R661H_6	HLA-C03:03	LVQDTHIHL	0.9994	0.9811	0.0861	29.15	0.1641	183.21	1/982	1/7748
SNV	Breast	AXL_A273V_11	HLA-A02:01	VLSDDGMGIQV	0.9965	0.5571	0.5972	158.93	0.468	20.04	1/982	1/7748
SNV	Breast	CAMKMT_A257V_8	HLA-B15:01	LLQPRGKVM	0.9777	0.9711	0.8814	430.18	0.4928	8.39	1/982	2/7748
SNV	Breast	CAMKMT_A257V_7	HLA-B15:01	LQPRGKVMVF	0.9996	0.8212	0.8295	284.75	0.4227	8.39	1/982	2/7748
SNV	Breast	CLASP1_D360N_3	HLA-C07:02	EYNNFFQHL	0.7155	0.9041	0.4095	127.57	0.2198	42.4	1/982	1/7748
SNV	Breast	CSTF2T_R316H_5	HLA-B07:02	APIPHGPV	0.9994	0.5721	0.5259	97.32	0.2616	55.94	1/982	1/7748
SNV	Breast	CSTF2T_R316H_5	HLA-B07:02	APIPHGPVT	0.9946	0.5656	0.1461	43.48	0.1963	55.94	1/982	1/7748
SNV	Breast	FAT1_H1817P_7	HLA-B15:01	IVEPSVPTY	0.9708	0.9302	0.3633	26.02	0.1603	32.15	1/982	1/7748
SNV	Breast	FAT1_H1817P_8	HLA-B15:01	HIVEPSVPTY	0.9998	0.9566	0.352	12.22	0.1088	32.15	1/982	1/7748
SNV	Breast	KIAA1549_P586L_7	HLA-A02:01	SLAVRDLSV	0.968	0.5263	0.434	71.42	0.3482	21.61	1/982	1/7748
SNV	Breast	KIAA1549_P586L_1	HLA-C03:03	LSVFTPYSL	0.9992	0.9909	0.185	329.92	0.4353	21.61	1/982	1/7748
SNV	Breast	NDUFAF7_F435I_6	HLA-C03:03	SVVAGISEL	0.9994	0.9929	0.0173	4.08	0.0402	16.17	1/982	1/7748
SNV	Breast	NUP160_S571T_8	HLA-A02:01	YLSFLIPTSL	0.9869	0.8163	0.2524	277.88	0.5602	49.88	1/982	1/7748
SNV	Breast	NUP160_S571T_7	HLA-C03:03	LSFLIPTSL	0.9995	0.9945	0.0578	6.96	0.0629	49.88	1/982	1/7748
SNV	Breast	OR14K1_R14S_1	HLA-C07:02	SFTENWVLL	0.5239	0.9767	0.4666	487.31	0.3936	1.34	1/982	1/7748
SNV	Breast	PI4KB_D794N_3	HLA-C03:03	MVNGSMRSI	0.9961	0.9874	0.5824	371.46	0.4545	103.8	1/982	1/7748
SNV	Breast	PLXNA1_R1330W_7	HLA-C07:02	YRTYAMWVL	0.9526	0.9704	0.484	52.71	0.1375	21.24	1/982	1/7748
SNV	Breast	PRMT6_P314S_1	HLA-C03:03	SATHWKQAL	0.9987	0.9901	0.0578	214.91	0.3712	50.53	1/982	1/7748
SNV	Breast	TP53_C176F_9	HLA-B15:01	HMTEVVRRF	0.9944	0.8762	0.2634	26.91	0.1628	118.45	3/982	5/7748
SNV	Breast	WDR75_I520T_6	HLA-C03:03	VSFEETVTI	0.9982	0.9952	0.0861	11.87	0.0935	47.1	1/982	1/7748
SNV	Breast	ZNF233_D35N_3	HLA-B15:01	YQNVMLENF	0.9995	0.8853	0.1375	267.76	0.4123	4.36	1/982	1/7748
SNV	Breast	ZNF518B_M1052V_10	HLA-A02:01	RLYEDQEEWV	0.9957	0.7518	0.5616	9.71	0.1563	26.82	1/982	1/7748
SNV	Breast	ZNF521_C964F_2	HLA-C07:02	IFGERFPSL	0.9224	0.9379	0.2234	168.02	0.2495	6.12	1/982	1/7748
SNV	Breast	ADCY9_G700V_2	HLA-B07:02	KVRWAGVSL	0.9989	0.7455	0.0568	4.97	0.0736	15.51	1/982	1/7748
SNV	Breast	ADCY9_G700V_7	HLA-B57:01	EILQEKVRW	0.9575	0.9779	0.5209	234.07	0.3886	15.51	1/982	1/7748
SNV	Breast	MAPKBP1_A146T_7	HLA-B57:01	VAFSPSTKY	0.9917	0.9524	0.2453	16.56	0.1404	9.16	1/982	1/7748
SNV	Breast	ACACB_R1543H_6	HLA-C07:01	HRFFIHAII	0.9978	0.5054	0.1363	249.71	0.1241	3.3	1/982	1/7748
SNV	Breast	ASXL3_P348L_4	HLA-B15:17	KTELWKEKF	0.8967	0.9276	0.4579	6.01	0.3161	1.34	1/982	1/7748
SNV	Breast	ENAH_N98D_7	HLA-B15:17	GSKEDADVF	0.9677	0.733	0.8841	159.84	1.2111	79.34	1/982	1/7748
SNV	Breast	LDHC_S197T_5	HLA-B15:17	HGDSTVPLW	0.9221	0.9651	0.7384	146.65	1.1798	1.35	1/982	1/7748
SNV	Breast	MRPL20_P110S_6	HLA-B15:17	LAIYESKTF	0.9928	0.8952	0.268	4.19	0.2445	221.55	1/982	1/7748
SNV	Breast	NDUFS2_L240R_2	HLA-C07:01	GRMDDIYQF	0.9983	0.6167	0.044	12.47	0.0251	117.65	1/982	1/7748
SNV	Breast	NSUN3_H300Q_5	HLA-B15:17	RTCSQDFTF	0.9907	0.8878	0.015	2.86	0.1766	4.24	1/982	1/7748
SNV	Breast	OSBPL1A_E912D_4	HLA-B15:17	KSEDDWKTRW	0.9812	0.9144	0.7105	82.77	0.99	41.58	1/982	1/7748
SNV	Breast	PUS10_L476V_9	HLA-C15:05	YVDEHHFRV	0.9975	0.9117	0.0468	1.76	0.0048	11.36	1/982	1/7748
SNV	Breast	RPS6KA4_V514M_9	HLA-B15:17	ASQILRSLM	0.9935	0.8374	1.0199	111.2	1.0824	22.32	1/982	1/7748
SNV	Breast	RPS6KA4_V514M_4	HLA-B15:17	RSLMSAVSF	0.9945	0.9128	0.0532	1.46	0.0457	22.32	1/982	1/7748
SNV	Breast	RPS6KA4_V514M_4	HLA-B15:17	RSLMSAVSFM	0.9885	0.913	1.4311	190.77	1.2765	22.32	1/982	1/7748
SNV	Breast	TMEM5_K173N_3	HLA-B15:17	KANIFYATQW	0.9982	0.9392	0.5319	62.1	0.9107	19.51	1/982	1/7748
SNV	Breast	ZNF214_P469L_8	HLA-B15:17	RVHTGEKLY	0.9875	0.9504	0.2074	2.4	0.1356	12.66	1/982	1/7748
SNV	Breast	ADCY3_R885Q_6	HLA-B15:17	RVYEMQRW	0.9984	0.9	1.4133	7.61	0.3609	28.47	1/982	1/7748
SNV	Breast	AGRN_E1660D_7	HLA-B15:17	FARDLGDKM	0.8382	0.9097	0.6298	378	1.5827	33.67	1/982	1/7748
SNV	Breast	AGRN_E1660D_3	HLA-C05:01	LGDKMALEV	0.9999	0.9061	0.0726	198.23	0.2877	33.67	1/982	1/7748
SNV	Breast	ANAPC5_R662C_6	HLA-C05:01	ILDKGCAMF	0.9985	0.9327	0.051	15.7	0.1119	27.11	1/982	1/7748
SNV	Breast	ANAPC5_R662C_6	HLA-C05:01	ILDKGCAMFL	0.9999	0.9253	0.0665	42.8	0.1609	27.11	1/982	1/7748
SNV	Breast	ANKRD17_P1886S_3	HLA-A24:02	AYSPPQFAHAL	0.9997	0.5649	0.4435	365.47	0.642	115.55	1/982	1/7748
SNV	Breast	ARHGEF16_D248G_6	HLA-B15:17	GTQKVGATI	0.9372	0.8673	0.7751	15.72	0.5201	11.64	1/982	1/7748
SNV	Breast	ARHGEF16_D248G_1	HLA-B15:17	GATIVVKSY	0.983	0.8389	0.6814	14.02	0.4921	11.64	1/982	1/7748
SNV	Breast	CDH12_T582I_9	HLA-B15:17	SSYPVQSSI	0.9963	0.7941	0.1335	1.93	0.0868	1.36	1/982	1/7748
SNV	Breast	CDH12_T582I_4	HLA-B15:17	QSSINTMTI	0.9609	0.8693	0.3999	26.58	0.6503	1.36	1/982	1/7748
SNV	Breast	CDS1_R67T_4	HLA-C05:01	SSDTTPEIL	0.9999	0.8813	0.0147	14.22	0.1073	31.2	1/982	1/7748
SNV	Breast	COL12A1_M523L_1	HLA-B15:17	LTYVREKIF	0.9847	0.8215	0.3029	2.94	0.1803	44.65	1/982	1/7748
SNV	Breast	COL12A1_M523L_8	HLA-B15:17	STNTGKALTY	0.9917	0.7318	0.4941	4.29	0.2497	44.65	1/982	1/7748
SNV	Breast	LACTB2_R14P_4	HLA-B15:17	LSNPVVRVL	0.9966	0.7397	0.2339	2.55	0.151	14.16	1/982	1/7748
SNV	Breast	LACTB2_R14P_5	HLA-C05:01	RLSNPVVRV	0.9985	0.9632	1.763	154.06	0.2586	14.16	1/982	1/7748
SNV	Breast	OSR2_S254F_8	HLA-B15:17	KTLHMQEF	0.9986	0.9531	1.5467	21.22	0.5959	4.73	1/982	1/7748
SNV	Breast	PDXDC1_L336F_9	HLA-B15:17	TSNKPTDKF	0.9502	0.8819	0.198	5.98	0.3148	101.57	1/982	1/7748
SNV	Breast	PDXDC1_L336F_10	HLA-B15:17	LTSNKPTDKF	0.9887	0.8714	1.1501	33.06	0.7035	101.57	1/982	1/7748
SNV	Breast	PKD2_D624N_5	HLA-B15:17	GTQVNDFSTF	0.9848	0.9273	1.2898	26.63	0.6508	9.12	1/982	1/7748
SNV	Breast	PSMD7_V50I_5	HLA-B15:17	KVLDISNSF	0.9966	0.7951	0.0283	1.29	0.03	98.91	1/982	1/7748
SNV	Breast	PSMD7_V50I_1	HLA-B15:17	ISNSFAVPF	0.994	0.8241	0.0283	4.92	0.2769	98.91	1/982	1/7748
SNV	Breast	PSMD7_V50I_4	HLA-C05:01	VLDISNSF	1	0.8682	0.0968	211.44	0.2951	98.91	1/982	1/7748
SNV	Breast	TAPT1_V352M_9	HLA-B15:17	MVIASEIAM	0.9795	0.9195	0.6342	56.27	0.8773	2.65	1/982	1/7748
SNV	Breast	TAPT1_V352M_7	HLA-B15:17	IASEIAMDI	0.9106	0.7149	0.8841	287.76	1.4505	2.65	1/982	1/7748
SNV	Breast	TAPT1_V352M_3	HLA-B15:17	IAMDIVKHAF	0.9988	0.8345	0.541	32.09	0.6957	2.65	1/982	1/7748
SNV	Breast	TAPT1_V352M_2	HLA-C05:01	AMDIVKHAF	0.9996	0.9679	0.1064	8.81	0.0806	2.65	1/982	1/7748
SNV	Breast	TSR3_E213K_1	HLA-B15:17	KVLQAEQEF	0.9777	0.9844	0.1603	2.02	0.0961	78.01	1/982	1/7748
SNV	Breast	ZNF282_V141M_3	HLA-B15:17	TAMEFGNHM	0.9699	0.8933	0.367	23.6	0.6217	41.77	1/982	1/7748
SNV	Breast	ZNF282_V141M_4	HLA-B15:17	KTAMEFGNHM	0.9946	0.7495	1.0035	7.14	0.3487	41.77	1/982	1/7748
SNV	Breast	ZNF282_V141M_9	HLA-C05:01	LADCEKTAM	0.9999	0.9897	0.047	357.08	0.3608	41.77	1/982	1/7748
SNV	Breast	ZNF420_N429K_4	HLA-B15:17	KAFKRGSLL	0.9763	0.9028	0.152	2.06	0.0996	16.03	1/982	1/7748
SNV	Breast	ZNF675_K319Q_1	HLA-B15:17	QAFTQSSTL	0.8322	0.9218	0.2156	37.65	0.7417	4.4	1/982	1/7748
SNV	Breast	ZZEF1_D2300E_5	HLA-B15:17	KTVKEYQLV	0.8989	0.9282	0.2988	15.91	0.5232	17.82	1/982	1/7748
SNV	Breast	FMOD_R274Q_8	HLA-B08:01	APKLLYVQL	0.9519	0.8175	0.1046	139.6	0.2018	80.18	1/982	1/7748
SNV	Breast	HERC2_R1059H_8	HLA-B08:01	DLLLRFQHL	0.9986	0.9457	0.0318	7.86	0.033	13.4	1/982	1/7748
SNV	Breast	MIB1_P308L_7	HLA-C07:01	NRWTFNLAV	0.9583	0.5348	0.0592	329.33	0.1448	37.66	1/982	1/7748
SNV	Breast	AIM1_M1266I_7	HLA-C05:01	FTSVGSIKV	0.9981	0.9379	0.494	123.54	0.2381	31.9	1/982	1/7748
SNV	Breast	CCDC138_D555V_7	HLA-C05:01	LLSNVIVSL	0.996	0.8358	0.5179	304.74	0.3408	3.67	1/982	1/7748
SNV	Breast	COQ10A_S147F_5	HLA-C07:01	ERYTFAVSM	0.9954	0.6901	0.0786	25.45	0.0439	17.35	1/982	1/7748
SNV	Breast	FAT1_T3342K_8	HLA-C05:01	FSQDTYTKV	0.9994	0.8847	0.1133	54.42	0.1755	20.3	1/982	1/7748
SNV	Breast	JAK3_R741Q_1	HLA-B44:02	QQQLPAPKW	0.7669	0.6903	0.2419	121.02	0.2796	13.63	1/982	1/7748
SNV	Breast	MAOA_I254V_9	HLA-C05:01	HVDQSSDNV	0.9996	0.9466	0.1501	66.62	0.1896	96.16	1/982	1/7748
SNV	Breast	MAOA_I254V_5	HLA-C05:01	SSDNVIIETL	1	0.9241	0.0711	249.81	0.3157	96.16	1/982	1/7748
SNV	Breast	MAOB_A72D_4	HLA-C07:01	LRLDKELGL	0.9903	0.7447	0.082	45.06	0.0617	209.52	1/982	1/7748
SNV	Breast	PLA1A_L145F_8	HLA-A02:01	KLSLEISFFL	0.9913	0.6939	0.2592	42.02	0.2848	14.26	1/982	1/7748
SNV	Breast	RABL2A_T77M_8	HLA-A02:01	ILVDFWDMA	0.9941	0.6461	0.2146	236.98	0.5344	6.68	1/982	1/7748
SNV	Breast	SEC24C_S1077F_7	HLA-A02:01	SLSGGAFYV	0.9942	0.7049	0.0055	1.34	0.0149	42.06	1/982	1/7748
SNV	Breast	SEC24C_S1077F_8	HLA-A02:01	KSLSGGAFYV	0.9733	0.5534	0.4654	61.74	0.3295	42.06	1/982	1/7748
SNV	Breast	SEC24C_S1077F_7	HLA-C05:01	SLSGGAFYV	0.978	0.9775	1.345	299.1	0.3384	42.06	1/982	1/7748
SNV	Breast	TRIO_V1991A_2	HLA-C05:01	YAVEGYMAL	0.9558	0.924	0.1799	29.44	0.1411	34.67	1/982	1/7748
SNV	Breast	WEE1_G322E_4	HLA-A02:01	RLDECIYAI	0.9969	0.5264	0.047	3.57	0.0757	21.54	1/982	2/7748
SNV	Breast	WEE1_G322E_4	HLA-C05:01	RLDECIYAI	0.9998	0.8979	0.0419	2.57	0.0345	21.54	1/982	1/7748
SNV	Breast	ZRANB3_D144H_7	HLA-B08:01	DAKTLIHAL	0.9818	0.5024	0.0801	4.44	0.0186	3.04	1/982	1/7748
SNV	Breast	AHCTF1_N397T_8	HLA-C02:02	SVFTWQVTI	0.6216	0.9647	0.4878	448.65	0.4401	48.23	1/982	1/7748
SNV	Breast	CALHM2_A255V_8	HLA-B27:05	RRFFGFVVL	0.9999	0.9264	0.0855	1.26	0.0191	32.16	1/982	1/7748
SNV	Breast	CALHM2_A255V_9	HLA-B27:05	VRRFFGFVVL	0.9997	0.8044	0.8286	282.91	0.5271	32.16	1/982	1/7748
SNV	Breast	CALHM2_A255V_8	HLA-B27:05	RRFFGFVVLN	0.9999	0.9228	0.5276	281.93	0.5266	32.16	1/982	1/7748
SNV	Breast	CALHM2_A255V_8	HLA-B27:05	RRFFGFVVLNK	0.9999	0.8509	0.0855	14.48	0.2236	32.16	1/982	1/7748
SNV	Breast	INPP1_D54N_3	HLA-B51:01	LANVLVQEV	0.998	0.9096	0.0974	487.82	0.4346	25.46	1/982	1/7748
SNV	Breast	SLC36A1_Y116F_10	HLA-B27:05	RRLNKSFVDF	1	0.7221	0.0729	13.54	0.2186	8.66	1/982	1/7748
SNV	Breast	SLC36A1_Y116F_4	HLA-C02:02	FVDFGDTVM	0.7916	0.9924	0.5039	28.99	0.0652	8.66	1/982	1/7748
SNV	Breast	SLC36A1_Y116F_4	HLA-C02:02	FVDFGDTVMY	0.8985	0.9845	0.7014	219.22	0.281	8.66	1/982	1/7748
SNV	Breast	TNRC6A_V1784I_8	HLA-B27:05	GRITNWLIL	0.9997	0.9071	0.4551	1.77	0.0503	42.5	1/982	1/7748
SNV	Breast	TNRC6A_V1784I_8	HLA-B27:05	GRITNWLILK	0.9999	0.8819	0.2085	7.12	0.1672	42.5	1/982	1/7748
SNV	Breast	TOR1A_F307L_10	HLA-B27:05	SRVAEEMTFL	0.9999	0.8719	0.1303	129.67	0.4364	52.48	1/982	1/7748
SNV	Breast	TOR1A_F307L_9	HLA-C02:02	RVAEEMTFL	0.8965	0.9379	0.5134	12.15	0.0251	52.48	1/982	1/7748
SNV	Breast	CCDC24_H116Y_9	HLA-B15:01	VQYSPRVLY	0.9999	0.766	0.0255	1.46	0.006	8.67	1/982	1/7748
SNV	Breast	CCDC24_H116Y_9	HLA-B15:01	VQYSPRVLYF	0.9997	0.6936	0.2303	16	0.1248	8.67	1/982	1/7748
SNV	Breast	HCFC1_P1494L_9	HLA-C03:04	TVTQSTPVL	0.9946	0.9782	0.4609	74.55	0.2439	41.88	1/982	1/7748
SNV	Breast	HCFC1_P1494L_9	HLA-C16:01	TVTQSTPVL	0.731	0.9659	0.9501	69.41	0.3506	41.88	1/982	1/7748
SNV	Breast	TSHZ3_T36M_8	HLA-A02:01	GLDPEEHMA	0.929	0.6924	0.9635	172.42	0.4819	14	1/982	1/7748
SNV	Breast	TSHZ3_T36M_2	HLA-A02:01	HMADGEPSA	0.9371	0.5617	0.3887	139.32	0.4455	14	1/982	1/7748
SNV	Breast	TSHZ3_T36M_2	HLA-B15:01	HMADGEPSAKY	1	0.9175	0.2325	113.92	0.2985	14	1/982	1/7748
SNV	Breast	CDH23_E859Q_3	HLA-A02:01	LMQKIVVSV	0.9976	0.5576	0.0495	15.44	0.1952	4.32	1/982	1/7748
SNV	Breast	CDK11B_D71H_7	HLA-B35:03	SPYRREHSM	0.9148	0.7243	0.1459	89.9	0.0987	29.88	1/982	1/7748
SNV	Breast	COL6A2_V594I_7	HLA-A02:01	GLTECDIMTYV	0.9982	0.609	1.6636	181.68	0.4909	930.95	1/982	1/7748
SNV	Breast	ERBB3_V104L_8	HLA-B35:03	LPLPNLRLV	0.8866	0.8184	0.1015	479.81	0.1741	42.48	1/982	1/7748
SNV	Breast	FLNA_A2491S_4	HLA-B35:03	TPMSPGSYL	0.9902	0.9072	0.0311	6.92	0.0283	416.88	1/982	1/7748
SNV	Breast	FOXA1_S401Y_4	HLA-B35:03	HPFYINNLM	0.993	0.6863	0.0201	2.85	0.0128	54.42	1/982	1/7748
SNV	Breast	FOXA1_S401Y_8	HLA-C01:02	YSFNHPFYI	0.7018	0.8766	0.2801	361.16	0.0358	54.42	1/982	1/7748
SNV	Breast	GRIN2D_V848I_10	HLA-A02:01	KLDIDNMAGI	0.9861	0.5635	0.9377	36.49	0.2711	2.6	1/982	1/7748
SNV	Breast	HADHA_I376M_6	HLA-A02:01	LMGAGMAQV	0.9915	0.8093	0.0914	29.45	0.2502	223.75	1/982	1/7748
SNV	Breast	HADHA_I376M_7	HLA-A02:01	GLMGAGMAQV	0.9983	0.8431	0.2146	4.36	0.0936	223.75	1/982	1/7748
SNV	Breast	HID1_M500V_9	HLA-B35:03	SPYLKSLSV	0.8018	0.5937	0.1171	380.55	0.1633	32.59	1/982	1/7748
SNV	Breast	HNRNPK_T13S_4	HLA-B35:03	FPNSETNGEF	0.9816	0.8796	0.0331	59.28	0.0829	388.34	1/982	1/7748
SNV	Breast	MYLK_S1570L_6	HLA-A02:01	YMRQILEGV	0.9891	0.789	0.0464	42.85	0.2868	29.26	1/982	1/7748
SNV	Breast	MYLK_S1570L_3	HLA-A02:01	QILEGVEYI	0.9856	0.5427	0.5779	13.12	0.1809	29.26	1/982	1/7748
SNV	Breast	RRN3_V126L_2	HLA-A02:01	VLEEYLAFL	0.9942	0.691	0.163	3.77	0.0783	39.59	1/982	1/7748
SNV	Breast	STARD9_A4517V_9	HLA-A02:01	NLFSCQATV	0.9882	0.6027	0.0897	177.46	0.4869	2.22	1/982	1/7748
SNV	Breast	TDRD10_P312T_7	HLA-B35:03	IPPLTQTFM	0.9442	0.7093	0.1271	295.64	0.1515	1.56	1/982	1/7748
SNV	Breast	GLYCTK_R282H_3	HLA-B08:01	LPHSVKTVL	0.9811	0.6916	0.0686	147.5	0.2066	2.02	1/982	1/7748
SNV	Breast	GLYCTK_R282H_7	HLA-C07:01	LRAALPHSV	0.991	0.7953	0.1215	80.89	0.0792	2.02	1/982	1/7748
SNV	Breast	MAP4K1_R362Q_7	HLA-C07:01	ARLQPPQDL	0.9934	0.8639	0.1053	235.76	0.122	5.96	1/982	1/7748
SNV	Breast	PDZD7_R502H_7	HLA-B08:01	LAKTYPHL	0.9991	0.6529	1.0157	292.95	0.2697	4.39	1/982	1/7748
SNV	Breast	SNX25_A177V_6	HLA-A32:01	RAYTYVPSY	0.9678	0.8923	0.0304	4.5	0.0237	15.62	1/982	1/7748
SNV	Breast	ATG2B_A1246S_1	HLA-C16:01	SLDYRPLYL	0.9619	0.9264	1.1786	175.91	0.5487	2.67	1/982	1/7748
SNV	Breast	ATG2B_A1246S_1	HLA-C02:02	SLDYRPLYL	0.8662	0.8899	1.7382	273.42	0.3227	2.67	1/982	1/7748
SNV	Breast	ATN1_H961Y_7	HLA-B44:03	SELEPLYGV	0.952	0.9593	0.2037	21.35	0.1616	164.62	1/982	1/7748
SNV	Breast	FNIP1_G223V_4	HLA-B44:03	SEQVPLRLI	0.9943	0.8298	0.2291	38.71	0.2036	6.5	1/982	1/7748
SNV	Breast	FNIP1_G223V_7	HLA-C16:01	RAFSEQVPL	0.9576	0.967	0.0101	4.58	0.0415	6.5	1/982	1/7748
SNV	Breast	FNIP1_G223V_5	HLA-C16:01	FSEQVPLRL	0.9446	0.9763	0.2915	305.25	0.6985	6.5	1/982	1/7748
SNV	Breast	FNIP1_G223V_5	HLA-C02:02	FSEQVPLRL	0.6798	0.9698	0.4878	114.1	0.1757	6.5	1/982	1/7748
SNV	Breast	PREX1_R495H_9	HLA-B44:03	NEQVMYRFHY	0.9994	0.8003	0.428	388.37	0.3891	21.19	1/982	1/7748
SNV	Breast	RNF144A_V251M_9	HLA-C16:01	VIWHRTQVM	0.9402	0.9767	0.257	72.92	0.3606	22.58	1/982	1/7748
SNV	Breast	ENO3_P146L_3	HLA-A02:01	ILLVPAFNV	0.9834	0.6228	0.2054	10.87	0.1653	1.8	1/982	1/7748
SNV	Breast	GNPAT_L383W_4	HLA-A02:01	NMVWSPWTL	0.8547	0.6119	0.1794	392.04	0.6218	141.22	1/982	1/7748
SNV	Breast	GNPAT_L383W_11	HLA-B44:02	MELLQIENMVW	0.9996	0.5327	0.1134	330.6	0.3648	141.22	1/982	1/7748
SNV	Breast	NPR3_A262V_1	HLA-C03:04	VSSDTIRSI	0.9981	0.9791	0.1825	323.82	0.4323	50.76	1/982	1/7748
SNV	Breast	TFE3_D508V_9	HLA-A02:01	LLDLHFPSV	0.9991	0.8422	0.0638	3.04	0.0667	48.56	1/982	1/7748
SNV	Breast	TFE3_D508V_10	HLA-A02:01	ALLDLHFPSV	0.9995	0.8136	0.0844	2.56	0.0565	48.56	1/982	1/7748
SNV	Breast	TTC31_F320L_2	HLA-A02:01	GLYHEAVVL	0.9853	0.5835	0.4765	10.78	0.1647	14.92	1/982	1/7748
SNV	Breast	ZNF415_H148Y_6	HLA-A02:01	FLPHPYEL	0.9942	0.8115	1.128	20.87	0.221	16.96	1/982	1/7748
SNV	Breast	ZNF415_H148Y_7	HLA-C07:04	SFLPHPYEL	0.8511	0.9562	0.1068	69.56	0.0075	16.96	1/982	1/7748
SNV	Breast	KRAS_G12V_8	HLA-A02:11	KLVVVGAVGV	0.984	0.6604	0.5072	338.97	1.2947	52.99	1/982	1/7748
SNV	Breast	LARP6_A113T_6	HLA-A02:11	NLEKDTFLL	0.8245	0.6771	0.9736	77.6	0.8656	3.61	1/982	1/7748
SNV	Breast	LARP6_A113T_8	HLA-B44:03	DENLEKDTF	0.9926	0.8222	0.2419	135.49	0.3064	3.61	1/982	1/7748
SNV	Breast	LARP6_A113T_9	HLA-B44:03	SDENLEKDTF	0.9512	0.8352	1.0271	123.7	0.2993	3.61	1/982	1/7748
SNV	Breast	MAP2K4_S257F_5	HLA-A02:11	QLVDFIAKT	0.9708	0.5914	0.1885	7.18	0.3455	25.22	1/982	1/7748
SNV	Breast	PIK3CA_E545A_5	HLA-B44:03	SEITAQEKDF	0.9983	0.8438	0.0655	2.75	0.0552	12.5	2/982	4/7748
SNV	Breast	EPS15_G644V_7	HLA-C05:01	KIDPFGVDPF	0.9998	0.8879	0.1829	470.43	0.3957	39.1	1/982	1/7748
SNV	Breast	FOXK1_P230L_2	HLA-C05:01	ILEPDLRSM	0.9999	0.9804	0.0968	143.62	0.2506	5.34	1/982	1/7748
SNV	Breast	PLCB2_P400L_4	HLA-A32:01	KTSLYPIIL	0.9794	0.8954	0.1999	234.48	0.2139	7.75	1/982	1/7748
SNV	Breast	PLCB2_P400L_2	HLA-A32:01	SLYPIILSF	0.9878	0.8729	0.0015	1.33	0.0031	7.75	1/982	1/7748
SNV	Breast	PLCB2_P400L_3	HLA-A32:01	TSLYPIILSF	0.9691	0.8812	1.21	385.72	0.2588	7.75	1/982	1/7748
SNV	Breast	PLCB2_P400L_4	HLA-A32:01	KTSLYPIILSF	0.9976	0.8928	1.3271	179.05	0.1915	7.75	1/982	1/7748
SNV	Breast	PLCB2_P400L_4	HLA-C15:02	KTSLYPIIL	0.9983	0.8893	0.0896	7.83	0.0689	7.75	1/982	1/7748
SNV	Breast	PUS7L_H524Y_5	HLA-C05:01	FSLPYSMRI	0.8231	0.8985	1.3005	59.41	0.1816	7.48	1/982	1/7748
SNV	Breast	PUS7L_H524Y_5	HLA-C15:02	FSLPYSMRI	0.9993	0.8529	0.0515	3.56	0.0226	7.48	1/982	1/7748
SNV	Breast	ZNF511_V237I_8	HLA-B18:01	SELFLKPIL	0.9093	0.9354	0.1985	430.8	0.251	10.36	1/982	1/7748
SNV	Breast	DMTN_I263F_3	HLA-B07:02	LPFRRKTRSL	0.9944	0.6135	0.2331	97.63	0.2619	18.3	1/982	1/7748
SNV	Breast	KPNA7_L419F_9	HLA-A32:01	VLEPLVNLF	0.9246	0.9754	0.7588	293.56	0.2336	2.05	1/982	1/7748
SNV	Breast	MED15_T494M_2	HLA-A32:01	VMARTPQNF	0.9334	0.8655	0.3093	96.68	0.1417	24.08	1/982	1/7748
SNV	Breast	MED15_T494M_10	HLA-B07:02	SPQPSQSPVM	0.9839	0.609	0.1096	4.28	0.0682	24.08	1/982	1/7748
SNV	Breast	NEMF_P263L_2	HLA-A32:01	KLVEDILTY	0.907	0.9224	0.0612	7.64	0.0328	23.4	1/982	1/7748
SNV	Breast	ELOVL5_L70F_5	HLA-A02:01	VVYNFGLTL	0.9125	0.6483	1.3659	100.15	0.3917	164	1/982	1/7748
SNV	Breast	ELOVL5_L70F_5	HLA-A32:01	VVYNFGLTL	0.8715	0.9745	0.0304	3.07	0.013	164	1/982	1/7748
SNV	Breast	ELOVL5_L70F_5	HLA-C03:04	VVYNFGLTL	0.9978	0.9928	0.089	2.6	0.0274	164	1/982	1/7748
SNV	Breast	GNAS_I285V_3	HLA-A32:01	RTVSVILFL	0.9907	0.8585	0.0051	53.77	0.1077	214.27	1/982	1/7748
SNV	Breast	JAKMIP1_G269R_8	HLA-B40:01	RELPPGIRDM	0.9873	0.5855	0.2522	2.98	0.1335	5.76	1/982	1/7748
SNV	Breast	JAKMIP1_G269R_8	HLA-B40:01	RELPPGIRDMV	0.9979	0.7359	0.3595	82.98	0.4388	5.76	1/982	1/7748
SNV	Breast	MAP3K10_A308S_8	HLA-B35:03	VPYREIDSL	0.9705	0.747	0.0979	9.35	0.0331	10.42	1/982	1/7748
SNV	Breast	NF1_Q1447H_1	HLA-A32:01	HSIANHVLF	0.9824	0.9656	0.4928	296.57	0.2345	16.58	1/982	1/7748
SNV	Breast	NF1_Q1447H_1	HLA-C03:04	HSIANHVLF	0.9991	0.992	0.3596	92.14	0.266	16.58	1/982	1/7748
SNV	Breast	SCAF4_I575V_7	HLA-A32:01	KVNQKSVKI	0.9954	0.8466	0.561	88.6	0.1365	31.47	1/982	1/7748
SNV	Breast	SCAF4_I575V_3	HLA-A32:01	KSVKIAWAL	0.9835	0.9421	0.0261	42.49	0.096	31.47	1/982	1/7748
SNV	Breast	ARHGAP26_L50P_6	HLA-A02:01	SLISAPKNL	0.8915	0.7924	0.9285	191.16	0.4996	7.46	1/982	1/7748
SNV	Breast	ARHGAP26_L50P_6	HLA-C12:03	SLISAPKNL	0.9733	0.9827	0.9886	378.31	0.9635	7.46	1/982	1/7748
SNV	Breast	CARD16_T86M_5	HLA-A02:01	YLAEMLGL	0.9945	0.6322	1.3233	107.34	0.4008	25.37	1/982	1/7748
SNV	Breast	CARD16_T86M_5	HLA-A02:01	YLAEMLGLSA	0.9981	0.5555	0.7085	86.28	0.3725	25.37	1/982	1/7748
SNV	Breast	CARD16_T86M_5	HLA-A02:01	YLAEMLGLSAA	0.9992	0.5292	1.1233	168.67	0.4782	25.37	1/982	1/7748
SNV	Breast	DOCK7_M1015V_5	HLA-C04:01	FFELVVKSM	0.9941	0.9046	0.0633	210.41	0.1035	16.43	1/982	1/7748
SNV	Breast	DOCK7_M1015V_1	HLA-C12:03	VVKSMVHHL	0.9806	0.9626	0.2434	101.41	0.5259	16.43	1/982	1/7748
SNV	Breast	KDM4A_L499F_9	HLA-B35:01	NPASVGGRF	0.9868	0.6337	0.1404	4.31	0.0816	57.45	1/982	1/7748
SNV	Breast	KDM4A_L499F_7	HLA-C12:03	ASVGGRFVF	0.9623	0.9695	0.4894	36.59	0.314	57.45	1/982	1/7748
SNV	Breast	PDCD6IP_S108F_6	HLA-A02:01	SLFGGFVKL	0.9937	0.8547	0.0325	1.19	0.0115	87.9	1/982	1/7748
SNV	Breast	PDCD6IP_S108F_6	HLA-A02:01	SLFGGFVKLA	0.9863	0.595	0.4625	17.34	0.2053	87.9	1/982	1/7748
SNV	Breast	PDCD6IP_S108F_6	HLA-A02:01	SLFGGFVKLAL	0.9933	0.5196	0.9635	51.28	0.3056	87.9	1/982	1/7748
SNV	Breast	PDCD6IP_S108F_6	HLA-C12:03	SLFGGFVKL	0.9781	0.9948	0.1394	33.48	0.2983	87.9	1/982	1/7748
SNV	Breast	PDCD6IP_S108F_1	HLA-C12:03	FVKLALASL	0.9941	0.9891	0.3124	38.03	0.3207	87.9	1/982	1/7748
SNV	Breast	SRGAP2_S206F_1	HLA-B35:03	FPDSTANVRI	0.9754	0.9686	0.092	245.8	0.1421	9.82	1/982	1/7748
SNV	Breast	SYNE2_M3961V_6	HLA-B35:03	LPQTGVKPL	0.9673	0.9307	0.0483	127.67	0.1123	26.35	1/982	1/7748
SNV	Breast	TP53_L111Q_7	HLA-C12:03	GSYGFRQGF	0.7859	0.9848	0.6194	17.29	0.1909	79.87	1/982	2/7748
SNV	Breast	ZNF565_R498C_5	HLA-C12:03	MAFICSSQL	0.9941	0.9531	0.0071	118.98	0.5686	5.04	1/982	1/7748
SNV	Breast	EEFSEC_F273L_1	HLA-C07:02	LHMPITSAM	0.7961	0.9656	0.1481	72.1	0.1643	26.56	1/982	1/7748
SNV	Breast	PEF1_L240V_3	HLA-A02:01	MQVDRFIQV	0.9977	0.5821	0.0989	12.95	0.1798	171.06	1/982	1/7748
SNV	Breast	PEF1_L240V_4	HLA-A02:01	AMQVDRFIQV	0.9915	0.6459	0.6341	145.5	0.4529	171.06	1/982	1/7748
SNV	Breast	SERINC2_G163S_4	HLA-C07:02	FYFSVVGSF	0.5075	0.9426	0.024	18.83	0.0746	134.84	1/982	1/7748
SNV	Breast	TICRR_P1851L_9	HLA-A02:01	ALQALTQSL	0.9637	0.5902	0.3779	43.53	0.2883	14.54	1/982	1/7748
SNV	Breast	TOMM40L_T239R_7	HLA-B47:01	VEFEANRRL	0.8221	0.549	0.065	49.49	0.0442	38.28	1/982	1/7748
SNV	Breast	TOMM40L_T239R_2	HLA-C07:02	NRRLQDTTF	0.7884	0.937	0.3945	456.47	0.384	38.28	1/982	1/7748
SNV	Breast	TOMM40L_T239R_1	HLA-C07:02	RRLQDTTFSF	0.9938	0.957	0.1449	234.55	0.2886	38.28	1/982	1/7748
SNV	Breast	ABCB7_Q464H_8	HLA-C02:02	KVMASPLHI	0.7864	0.9626	0.4452	90.84	0.1481	23.17	1/982	1/7748
SNV	Breast	ADAMTS17_G711E_6	HLA-C02:02	FSHARETAL	0.823	0.9631	0.0346	148.31	0.2176	7.74	1/982	1/7748
SNV	Breast	ARHGEF11_E934D_3	HLA-A02:01	RLDGYQKRL	0.8984	0.595	1.0169	390.18	0.6207	59.77	1/982	1/7748
SNV	Breast	ARHGEF11_E934D_4	HLA-B27:05	HRLDGYQKR	0.9993	0.7743	0.1474	5.71	0.1517	59.77	1/982	1/7748
SNV	Breast	ARHGEF11_E934D_4	HLA-B27:05	HRLDGYQKRL	0.9998	0.8929	0.1003	13.22	0.2167	59.77	1/982	1/7748
SNV	Breast	ARHGEF11_E934D_3	HLA-C05:01	RLDGYQKRL	0.9999	0.9647	0.1085	9.19	0.0837	59.77	1/982	1/7748
SNV	Breast	ARHGEF11_G935C_5	HLA-B27:05	HRLECYQKR	0.999	0.921	0.2085	356.26	0.5571	59.77	1/982	1/7748
SNV	Breast	ASAH2_T543A_3	HLA-C02:02	FTAMSGRRL	0.749	0.9789	0.4226	160.06	0.23	1.17	1/982	1/7748
SNV	Breast	ASMTL_R79Q_8	HLA-A02:01	RLYQKDLQA	0.9859	0.5261	0.5156	139.87	0.4461	17.74	1/982	1/7748
SNV	Breast	ATRNL1_P102L_5	HLA-A02:01	KLTELSGYL	0.9933	0.6984	0.3	58.72	0.3231	1	1/982	1/7748
SNV	Breast	ATRNL1_P102L_8	HLA-B27:05	GRFKLTEL	1	0.864	0.5683	200.52	0.4849	1	1/982	1/7748
SNV	Breast	ATRNL1_P102L_8	HLA-B27:05	GRFKLTELSGY	1	0.7576	0.0043	3.35	0.1071	1	1/982	1/7748
SNV	Breast	BIRC6_T1033A_1	HLA-A02:01	ALTPRFSATV	0.977	0.5114	1.1549	493.01	0.6723	62.22	1/982	1/7748
SNV	Breast	BIRC6_T1033A_5	HLA-B27:05	TRFEALTPR	0.9994	0.7767	0.1055	11.75	0.2079	62.22	1/982	1/7748
SNV	Breast	BIRC6_T1033A_5	HLA-B27:05	TRFEALTPRF	1	0.7308	0.051	2.53	0.0798	62.22	1/982	1/7748
SNV	Breast	C14orf119_S15Y_1	HLA-A02:01	YLLPSVPHNT	0.8747	0.8595	0.6574	272.71	0.5572	51.24	1/982	1/7748
SNV	Breast	CHI3L1_D47N_1	HLA-B27:05	NRFLCTHIIY	0.9999	0.8156	0.4655	495.77	0.6002	20.01	1/982	1/7748
SNV	Breast	CHI3L1_D47N_6	HLA-C05:01	FPDALNRFL	0.9947	0.8978	0.1741	74.3	0.1972	20.01	1/982	1/7748
SNV	Breast	CXorf21_G153S_6	HLA-C05:01	SSFEYSPLL	0.9842	0.9509	0.6538	295.58	0.3369	9.02	1/982	1/7748
SNV	Breast	CXorf21_G153S_6	HLA-C02:02	SSFEYSPLL	0.7773	0.9773	0.0981	99.89	0.1585	9.02	1/982	1/7748
SNV	Breast	GPRASP2_Y649F_9	HLA-A02:01	SLIETLLNF	0.8736	0.7113	0.9163	300.99	0.5732	6.95	1/982	1/7748
SNV	Breast	GTF3C1_S1475I_3	HLA-B27:05	KRILVNRRR	0.9989	0.8334	0.2616	30.32	0.2837	63.85	1/982	1/7748
SNV	Breast	HDAC6_R282S_7	HLA-B27:05	HRYEQGSFW	0.9935	0.9124	0.3465	2.73	0.086	14.35	1/982	1/7748
SNV	Breast	LRRC37A3_E1424Q_1	HLA-C05:01	QADSAGTAF	0.9994	0.9562	0.0861	9.74	0.0878	6.39	1/982	1/7748
SNV	Breast	NAT8L_S214F_4	HLA-B27:05	LRMFVDSRF	0.9997	0.8549	0.3465	4.32	0.1309	5.46	1/982	1/7748
SNV	Breast	NDUFAB1_E77D_3	HLA-A02:01	TLDGIQDRV	0.981	0.6947	0.5313	10.36	0.1614	155.16	1/982	1/7748
SNV	Breast	NDUFAB1_E77D_3	HLA-C05:01	TLDGIQDRV	0.9997	0.9873	0.1064	7.28	0.0735	155.16	1/982	1/7748
SNV	Breast	NYNRIN_P145A_5	HLA-B27:05	LRWGAAPLL	0.9998	0.9494	0.0455	1.46	0.0328	4.48	1/982	1/7748
SNV	Breast	NYNRIN_P145A_7	HLA-B27:05	GRLRWGAAPL	0.9999	0.9306	0.4551	100.13	0.4077	4.48	1/982	1/7748
SNV	Breast	NYNRIN_P145A_7	HLA-B27:05	GRLRWGAAPLL	1	0.8994	0.1732	8.4	0.1798	4.48	1/982	1/7748
SNV	Breast	P4HA3_G241E_7	HLA-C02:02	FAYFRAENV	0.897	0.9904	0.2844	384.14	0.3966	3.16	1/982	1/7748
SNV	Breast	PIFO_F51Y_1	HLA-C05:01	YSDGYGLAY	0.9863	0.9579	0.2356	9.76	0.088	14.9	1/982	1/7748
SNV	Breast	PIFO_F51Y_2	HLA-C02:02	YYSDGYGLAY	0.6472	0.9071	1.9431	413.7	0.4168	14.9	1/982	1/7748
SNV	Breast	PIK3R3_A368V_5	HLA-B27:05	NRVQVEDLL	0.9968	0.7031	0.3812	161.79	0.461	54.47	1/982	1/7748
SNV	Breast	PIK3R3_A368V_5	HLA-B27:05	NRVQVEDLLY	0.9998	0.681	0.1549	33.58	0.2926	54.47	1/982	1/7748
SNV	Breast	PIK3R3_A368V_10	HLA-C05:01	FVEDINRVQV	0.9999	0.978	0.2409	389.35	0.3718	54.47	1/982	1/7748
SNV	Breast	PLEKHA6_S142C_3	HLA-B44:02	AECPEEQEAW	0.9988	0.5207	0.0051	4.88	0.0798	57.7	1/982	1/7748
SNV	Breast	PUM2_P103L_1	HLA-C05:01	LADKLDSRF	0.9996	0.9142	0.1324	26.6	0.1364	187.53	1/982	1/7748
SNV	Breast	SIX1_G259S_1	HLA-A02:01	SLQTHQHQL	0.9465	0.7311	0.3574	236.4	0.534	25.46	1/982	1/7748
SNV	Breast	TBX20_P378A_8	HLA-C02:02	STASIATAI	0.7986	0.9377	0.17	93.17	0.1498	4.45	1/982	1/7748
SNV	Breast	TOM1L1_V198F_3	HLA-A02:01	TLFPEQIGKL	0.9752	0.5883	0.7489	23.76	0.232	69.6	1/982	1/7748
SNV	Breast	ZBTB49_T748S_1	HLA-A02:01	SLWGLAMKT	0.8869	0.6863	0.4216	97.68	0.3885	10.71	1/982	1/7748
SNV	Breast	ZBTB49_T748S_1	HLA-A02:01	SLWGLAMKTL	0.945	0.6059	0.6314	127.89	0.4308	10.71	1/982	1/7748
SNV	Breast	ZNF41_S304R_2	HLA-B27:05	KRNKVFPQK	0.9995	0.809	0.1191	12.32	0.2115	6.99	1/982	1/7748
SNV	Breast	CHST8_D317N_4	HLA-A02:01	YLLNVHRPV	0.9936	0.614	0.069	69.41	0.3446	18.1	1/982	1/7748
SNV	Breast	PIK3CA_D350G_8	HLA-C12:03	YVNVNIRGI	0.9083	0.9477	1.0953	58.35	0.3951	21.78	1/982	1/7748
SNV	Breast	TMTC2_R726H_7	HLA-A02:01	FLLEEAHL	0.9915	0.8129	1.9188	51.17	0.3054	5.41	1/982	1/7748
SNV	Breast	TMTC2_R726H_7	HLA-A02:01	FLLEEAHLI	0.9979	0.7966	0.0061	1.1	0.0074	5.41	1/982	1/7748
SNV	Breast	TMTC2_R726H_1	HLA-A02:01	HLIEAAEMA	0.9915	0.6043	0.9071	107.99	0.4019	5.41	1/982	1/7748
SNV	Breast	TMTC2_R726H_7	HLA-A02:01	FLLEEAHLIEA	0.9998	0.7012	0.7194	33.83	0.2637	5.41	1/982	1/7748
SNV	Breast	TMTC2_R726H_2	HLA-B39:01	AHLIEAAEM	0.999	0.982	0.1436	273.01	0.2514	5.41	1/982	1/7748
SNV	Breast	TMTC2_R726H_7	HLA-C17:01	FLLEEAHLI	0.5845	0.9724	0.1081	19.95	0.0658	5.41	1/982	1/7748
SNV	Breast	TOMM40_L307M_4	HLA-C17:01	QLDMPKANL	0.792	0.8779	0.6421	266.39	0.3527	41.04	1/982	1/7748
SNV	Breast	TOMM40_L307M_9	HLA-C12:03	VSFGYQLDM	0.8694	0.9833	0.1621	70.91	0.4391	41.04	1/982	1/7748
SNV	Breast	VCL_N231S_3	HLA-B39:01	NRSFTVEKM	0.9958	0.8322	0.1608	111.21	0.1824	62.31	1/982	1/7748
SNV	Breast	AHCY_P427L_10	HLA-A02:01	GMSCDGPFKL	0.912	0.5666	0.6693	64.12	0.3344	159.1	1/982	1/7748
SNV	Breast	CCDC78_P148L_4	HLA-B08:01	QVQLKNTM	0.9616	0.6863	0.2567	257.83	0.2561	1.93	1/982	1/7748
SNV	Breast	CD53_T51R_1	HLA-A02:01	RLGNVFVIV	0.9916	0.5804	0.2314	34.37	0.2653	40.28	1/982	1/7748
SNV	Breast	CD53_T51R_2	HLA-C07:01	LRLGNVFVI	0.9974	0.7362	0.1251	190.5	0.1141	40.28	1/982	1/7748
SNV	Breast	ETV5_P256S_3	HLA-C03:04	AASPPPQGF	0.998	0.9809	0.0691	62.78	0.2258	14.09	1/982	1/7748
SNV	Breast	ZNF76_V508L_2	HLA-A02:01	VLAEDSSVASL	0.9977	0.5096	0.6539	280.91	0.562	9.73	1/982	1/7748
SNV	Breast	ZNF76_V508L_9	HLA-C03:04	TIITSGAVL	0.9965	0.9903	0.3653	80.29	0.2517	9.73	1/982	1/7748
SNV	Breast	CWC25_V63I_2	HLA-B08:01	AIKKKEEKL	0.9578	0.5931	0.0985	298.29	0.2716	16.91	1/982	1/7748
SNV	Breast	HIPK1_R1189Q_4	HLA-B15:01	GSSQGSTIY	0.9463	0.6842	0.4168	62.27	0.2416	62	1/982	1/7748
SNV	Breast	HIPK1_R1189Q_2	HLA-B15:01	SQGSTIYTGY	0.9984	0.7593	0.1599	38.05	0.1906	62	1/982	1/7748
SNV	Breast	SHANK1_R1997Q_2	HLA-B15:01	RQAPSPSLL	0.9985	0.8508	0.2325	46.22	0.2094	1.34	1/982	1/7748
SNV	Breast	SHANK1_R1997Q_3	HLA-C07:01	LRQAPSPSL	0.9979	0.7711	0.0876	50.25	0.0655	1.34	1/982	1/7748
SNV	Breast	SOD2_D199E_9	HLA-B15:01	LQYKNVRPEY	0.9999	0.8146	0.1963	8.49	0.0821	95.4	1/982	1/7748
SNV	Breast	UBN1_P654S_6	HLA-C03:04	LANPPSVNL	0.9999	0.9824	0.041	1.54	0.0099	49.41	1/982	1/7748
SNV	Breast	ZNF429_K220R_6	HLA-B15:01	ALTNHRRIY	0.8341	0.8903	0.5524	26.7	0.1622	11.19	1/982	1/7748
SNV	Breast	APPL2_M111V_7	HLA-B15:01	KQLADTVVL	0.9913	0.7092	0.3871	379.71	0.4716	49.07	1/982	1/7748
SNV	Breast	EFNB2_P261L_1	HLA-B15:01	LQHTTTLSL	0.9989	0.7484	0.0164	370.98	0.4677	68.41	1/982	1/7748
SNV	Breast	EFNB2_P261L_3	HLA-C03:03	HSLQHTTTL	0.9997	0.9802	0.005	2.39	0.0247	68.41	1/982	1/7748
SNV	Breast	KCNQ3_T655M_6	HLA-B15:01	LQVQVMEY	0.9997	0.761	0.6879	209.7	0.3775	3.77	1/982	1/7748
SNV	Breast	KCNQ3_T655M_7	HLA-B15:01	RLQVQVMEY	0.9996	0.805	0.1084	9.05	0.0866	3.77	1/982	1/7748
SNV	Breast	KCNQ3_T655M_6	HLA-B15:01	LQVQVMEYY	0.9996	0.6123	0.0685	19.84	0.1405	3.77	1/982	1/7748
SNV	Breast	KCNQ3_T655M_7	HLA-B15:01	RLQVQVMEYY	0.9993	0.6326	0.6823	348.14	0.4569	3.77	1/982	1/7748
SNV	Breast	KCNQ3_T655M_9	HLA-B18:01	MERLQVQVM	0.9663	0.7895	0.0824	13.9	0.071	3.77	1/982	1/7748
SNV	Breast	PCYT1A_I209S_2	HLA-B15:01	RSVRDYDVY	0.9641	0.7342	0.5825	389.35	0.4759	39.24	1/982	1/7748
SNV	Breast	ZNF75A_D12N_3	HLA-B15:01	LLNPTQKALY	0.9999	0.5973	0.4325	187.84	0.3631	15.66	1/982	1/7748
SNV	Breast	ZNF75A_D12N_3	HLA-C03:03	LLNPTQKAL	0.9932	0.9427	0.5427	121.62	0.2948	15.66	1/982	1/7748
SNV	Breast	CXCR3_A183T_2	HLA-C03:04	FTLPDFIFL	0.9892	0.9909	0.0912	20.08	0.1385	3.08	1/982	1/7748
SNV	Breast	SEMA4D_S273F_9	HLA-A32:01	RTLQKKWTF	0.9938	0.9193	0.0092	2.39	0.0095	10.06	1/982	1/7748
SNV	Breast	SLC12A2_L616F_9	HLA-C03:04	FSATLSSAF	0.9974	0.9941	0.044	39.94	0.1848	161.71	1/982	1/7748
SNV	Breast	WDFY4_A1507P_7	HLA-B40:01	AEAAHQPQL	0.9992	0.6942	0.0092	1.31	0.0383	2.7	1/982	1/7748
SNV	Breast	ABCB8_E579K_6	HLA-B18:01	LEASDKEVY	0.9883	0.969	0.0425	27.41	0.0946	8.34	1/982	1/7748
SNV	Breast	ASNS_R392S_3	HLA-B18:01	SESLLRELY	0.9967	0.8856	0.0201	5.05	0.0364	91.2	1/982	1/7748
SNV	Breast	BTD_E64K_4	HLA-C07:02	AVYKHPSIL	0.9155	0.9495	1.0865	251.2	0.2967	36.17	1/982	1/7748
SNV	Breast	BTD_E64K_2	HLA-C07:02	YKHPSILSL	0.8527	0.8434	0.0099	12.56	0.058	36.17	1/982	1/7748
SNV	Breast	BTD_E64K_3	HLA-C07:02	VYKHPSILSL	0.8952	0.8934	0.5283	480.42	0.3915	36.17	1/982	1/7748
SNV	Breast	CDS2_F194L_6	HLA-C07:02	HYRLQLYMF	0.6286	0.8787	1.1101	362.71	0.3501	12.83	1/982	1/7748
SNV	Breast	CHD7_S311F_1	HLA-C07:02	FRYPYSNL	0.9785	0.9399	0.2626	44.58	0.1231	12.45	1/982	1/7748
SNV	Breast	CHD7_S311F_1	HLA-C07:01	FRYPYSNL	0.9998	0.6923	0.4086	186.62	0.1133	12.45	1/982	1/7748
SNV	Breast	EPHA3_D316V_6	HLA-C07:02	FRADKVPPSM	0.9995	0.945	0.0077	47.33	0.1278	2.72	1/982	1/7748
SNV	Breast	EPHA3_D316V_6	HLA-C07:01	FRADKVPPSM	0.9996	0.5626	0.0313	37.13	0.0547	2.72	1/982	1/7748
SNV	Breast	EPHB2_S889G_6	HLA-C07:02	IRNPNGLKAM	0.9825	0.8634	0.2811	163.2	0.2463	2.47	1/982	1/7748
SNV	Breast	EPHB2_S889G_6	HLA-C07:01	IRNPNGLKAM	0.9978	0.5636	0.221	265.13	0.1279	2.47	1/982	1/7748
SNV	Breast	F8_S1709R_8	HLA-B18:01	DENQSPRRF	0.9979	0.9645	0.0935	8.22	0.0553	4.27	1/982	1/7748
SNV	Breast	GABRG3_D222H_7	HLA-C07:02	WRLYQFHFM	0.9829	0.9651	0.4496	273.22	0.3082	1.54	1/982	1/7748
SNV	Breast	LRCH3_T231I_3	HLA-A03:01	KIITIPVCYR	0.9809	0.551	0.2619	231.2	0.3819	12.99	1/982	1/7748
SNV	Breast	NID1_I130V_4	HLA-B07:02	SPSVTQRAA	0.9933	0.5562	0.1814	239.55	0.3371	88.76	1/982	1/7748
SNV	Breast	NID1_I130V_9	HLA-C07:02	YREDLSPSV	0.7469	0.9381	0.3636	124.3	0.217	88.76	1/982	1/7748
SNV	Breast	NID1_I130V_9	HLA-C07:01	YREDLSPSV	0.9474	0.7714	0.2969	107.57	0.0899	88.76	1/982	1/7748
SNV	Breast	NOL6_S718F_9	HLA-C07:02	FYETLRERF	0.9655	0.9553	0.1973	234.4	0.2886	25.89	1/982	1/7748
SNV	Breast	NOL6_S718F_3	HLA-C07:02	ERFSLLPRL	0.8438	0.8291	0.2626	162.76	0.2461	25.89	1/982	1/7748
SNV	Breast	ORMDL1_L58V_4	HLA-C07:02	IHNVGMYVF	0.7159	0.9563	0.8174	493.55	0.3955	71.36	1/982	1/7748
SNV	Breast	PLCD4_E462K_6	HLA-B18:01	SELALKSQF	0.9969	0.9297	0.0211	6.74	0.046	3.64	1/982	1/7748
SNV	Breast	PRUNE2_G840V_9	HLA-B18:01	NEWAMAKSV	0.9186	0.9216	0.177	58.84	0.1255	22.02	1/982	1/7748
SNV	Breast	PRUNE2_G840V_9	HLA-B18:01	NEWAMAKSVF	0.9887	0.9463	0.1584	37.91	0.1079	22.02	1/982	1/7748
SNV	Breast	RECQL5_P643S_7	HLA-B18:01	NEYDIPSAS	0.8803	0.9247	0.2159	177.35	0.1917	12.29	1/982	1/7748
SNV	Breast	RUNX2_P373R_1	HLA-C07:02	RRQFPSISSL	0.9923	0.9396	0.1973	190.33	0.2641	11.92	1/982	1/7748
SNV	Breast	RUNX2_P373R_1	HLA-C07:01	RRQFPSISSL	0.9984	0.6255	0.1086	441.8	0.1659	11.92	1/982	1/7748
SNV	Breast	SPATA5L1_A559V_7	HLA-C07:02	ARASTPVIL	0.8535	0.9213	0.1399	29.96	0.0978	6.04	1/982	1/7748
SNV	Breast	SPATA5L1_A559V_7	HLA-C07:01	ARASTPVIL	0.9953	0.5396	0.073	48.41	0.0642	6.04	1/982	1/7748
SNV	Breast	SSFA2_N206K_5	HLA-C07:02	SRFFKSSSF	0.9125	0.852	0.0066	3.87	0.0136	62.07	1/982	1/7748
SNV	Breast	SSFA2_S207P_5	HLA-C07:02	RFFNPSSF	0.9843	0.9235	0.9604	459.94	0.3851	62.07	1/982	1/7748
SNV	Breast	SSFA2_S207P_6	HLA-C07:02	SRFFNPSSF	0.8617	0.9493	0.0021	2.47	0.0076	62.07	1/982	1/7748
SNV	Breast	SSFA2_S207P_6	HLA-C07:01	SRFFNPSSF	0.9988	0.7096	0.0014	4.8	0.0093	62.07	1/982	1/7748
SNV	Breast	TBC1D8B_D760E_5	HLA-C07:02	IRYEEIHSM	0.9669	0.9027	0.0018	1.88	0.0053	3.03	1/982	1/7748
SNV	Breast	TBC1D8B_D760E_5	HLA-C07:01	IRYEEIHSM	0.9994	0.5927	0.0014	2.32	0.005	3.03	1/982	1/7748
SNV	Breast	VPS13A_E289Q_9	HLA-B18:01	IELHNIAIQF	0.9883	0.931	0.149	400.53	0.2459	12.54	1/982	1/7748
SNV	Breast	VPS13A_E289Q_2	HLA-C07:02	IQFNKPQYF	0.9391	0.922	0.0104	26.31	0.0908	12.54	1/982	1/7748
SNV	Breast	VPS13A_E289Q_2	HLA-C07:01	IQFNKPQYF	0.9142	0.5942	0.1809	482.21	0.172	12.54	1/982	1/7748
SNV	Breast	VSIG4_L103Q_1	HLA-B18:01	QEMDDRSHY	0.9979	0.9409	0.0193	4.42	0.0331	21.2	1/982	1/7748
SNV	Breast	VSIG4_L103Q_2	HLA-B18:01	TQEMDDRSHY	0.7582	0.8972	1.3045	496	0.2612	21.2	1/982	1/7748
SNV	Breast	ZNF808_Q438H_5	HLA-C07:02	KVFSHKSTL	0.9309	0.9038	0.8716	380.5	0.3571	8.4	1/982	1/7748
SNV	Breast	ADAR_I1111L_9	HLA-B07:02	HPKVGRVSL	0.9998	0.7297	0.0056	1.08	0.004	643.5	1/982	1/7748
SNV	Breast	ADAR_I1111L_9	HLA-B07:02	HPKVGRVSLY	0.9435	0.71	0.8007	111.33	0.2724	643.5	1/982	1/7748
SNV	Breast	INPP5B_K650M_9	HLA-C05:01	VVNDELYRM	0.9982	0.918	1.0919	274.64	0.3277	6.4	1/982	1/7748
SNV	Breast	TTLL5_S345G_6	HLA-B07:02	VPHRSGCFEL	0.9977	0.6869	0.1792	83.28	0.2491	18.45	1/982	1/7748
SNV	Breast	HIST1H2AE_E65Q_8	HLA-A02:01	YLTAEILQL	0.9969	0.5091	0.0442	1.5	0.0219	3.78	1/982	1/7748
SNV	Breast	KIAA1109_K4553N_3	HLA-A02:01	DLNWDIFQV	0.9233	0.7884	0.65	311.11	0.5785	23.72	1/982	1/7748
SNV	Breast	KIAA1109_K4553N_1	HLA-C04:01	NWDIFQVMI	0.9921	0.7291	0.0744	74.21	0.0659	23.72	1/982	1/7748
SNV	Breast	PNPT1_S383L_6	HLA-A32:01	KTLHGLALF	0.9974	0.9716	0.0006	3.68	0.0166	33.55	1/982	1/7748
SNV	Breast	RELN_G1597E_8	HLA-C04:01	ALDDVLIEM	0.9998	0.7227	0.0134	24.73	0.0397	1.17	1/982	1/7748
SNV	Breast	RELN_G1597E_8	HLA-C01:02	ALDDVLIEM	0.9984	0.9365	0.1248	438.45	0.0445	1.17	1/982	1/7748
SNV	Breast	UPRT_A218T_2	HLA-A32:01	RTKVYYAKF	0.9856	0.8522	0.0757	238.27	0.2153	14.83	1/982	1/7748
SNV	Breast	FBXO7_D348Y_3	HLA-B08:01	LLYVRSVL	0.9998	0.7244	0.3305	101.46	0.1696	53.24	1/982	1/7748
SNV	Breast	FBXO7_D348Y_5	HLA-C07:01	FRLLYVRSV	0.8977	0.5177	0.1757	147.84	0.1046	53.24	1/982	1/7748
SNV	Breast	LILRB2_P557S_4	HLA-B44:03	SEASQDVTY	0.9981	0.7989	0.0135	1.89	0.0352	3.86	1/982	1/7748
SNV	Breast	NGF_R80W_1	HLA-C07:01	WRLRSPRVL	0.9929	0.7686	0.2138	87.99	0.0821	2.87	1/982	1/7748
SNV	Breast	SLC26A3_R752H_3	HLA-A02:01	GLHNRVYEV	0.9923	0.7193	0.2276	1.87	0.0413	5.01	1/982	1/7748
SNV	Breast	ABI3BP_T432I_9	HLA-C16:01	RTLEQPRAI	0.7658	0.9851	0.3132	13.83	0.1291	19.75	1/982	1/7748
SNV	Breast	ABI3BP_T432I_1	HLA-C16:01	ILAPSETPF	0.856	0.9893	0.678	406.07	0.7794	19.75	1/982	1/7748
SNV	Breast	KDR_T384M_7	HLA-C16:01	KAGHVLMIM	0.8386	0.9845	0.1668	135.91	0.4885	23.59	1/982	1/7748
SNV	Breast	PHF12_V808E_2	HLA-B44:03	AENMCYRTL	0.9948	0.9088	0.2205	49.9	0.2272	13.79	1/982	1/7748
SNV	Breast	PHF12_V808E_2	HLA-B44:03	AENMCYRTLY	0.9996	0.8525	0.2037	8.48	0.1143	13.79	1/982	1/7748
SNV	Breast	PIK3C2A_H1433Y_9	HLA-B44:03	KEVSVFTYY	0.9979	0.8669	0.0214	1.3	0.0107	30.47	1/982	1/7748
SNV	Breast	PIK3C2A_H1433Y_9	HLA-B18:01	KEVSVFTYY	0.9841	0.8829	0.0243	7.49	0.0506	30.47	1/982	1/7748
SNV	Breast	UGP2_D463Y_6	HLA-C16:01	LTVSGYVTF	0.8611	0.9936	0.1253	59.51	0.3193	75.78	1/982	1/7748
SNV	Breast	AMPH_D383V_10	HLA-B07:02	SPMSQTLPWVL	0.9988	0.5956	0.2906	188.29	0.3159	17.86	1/982	1/7748
SNV	Breast	CEP290_Q780E_2	HLA-B44:03	SENEYLIHL	0.9966	0.9329	0.0872	2.21	0.0432	14.2	1/982	1/7748
SNV	Breast	CEP290_Q780E_2	HLA-B44:03	SENEYLIHLL	0.9975	0.9354	0.1903	13.28	0.1377	14.2	1/982	1/7748
SNV	Breast	ADCY7_R846H_7	HLA-C05:01	TMENVNHLL	0.9999	0.8668	0.0665	16.05	0.113	1.6	1/982	1/7748
SNV	Breast	ADCYAP1R1_G439R_2	HLA-C07:02	SRVNGGTQL	0.9278	0.8486	0.0969	12.36	0.0573	5.05	1/982	1/7748
SNV	Breast	BNC2_E201K_1	HLA-A02:01	KVLHILHGL	0.9629	0.5007	0.1021	169.61	0.4791	6	1/982	1/7748
SNV	Breast	PRKAA2_E217D_4	HLA-C05:01	FDDDHVPTL	0.9999	0.8867	0.0649	16.41	0.114	5.47	1/982	1/7748
SNV	Breast	ALG13_L201P_7	HLA-B35:01	LPLTPTPY	0.9947	0.9361	0.4705	147.44	0.3472	16.87	1/982	1/7748
SNV	Breast	ALG13_L201P_9	HLA-B35:01	FPLPLTPTPY	0.9983	0.849	0.038	1.52	0.0235	16.87	1/982	1/7748
SNV	Breast	ALG13_L201P_7	HLA-B35:01	LPLTPTPYKM	0.9735	0.9689	0.4273	131.32	0.3353	16.87	1/982	1/7748
SNV	Breast	ARID1A_G463V_2	HLA-B35:01	YVQQGQTPY	0.9628	0.6774	0.0644	3.73	0.0728	108.58	1/982	1/7748
SNV	Breast	MIB1_D968G_1	HLA-C07:02	GRLKNMIFL	0.9514	0.9159	0.2181	60.74	0.1502	68.41	1/982	1/7748
SNV	Breast	PRKAR1A_I149F_1	HLA-C04:01	FFDAMFSVSF	0.9998	0.7853	0.1289	42.38	0.0525	212.89	1/982	1/7748
SNV	Breast	SPSB3_W35R_10	HLA-A11:01	AVALAGSTNR	0.9954	0.5475	0.494	241.98	0.4382	2.11	1/982	1/7748
SNV	Breast	UBE2O_G457E_3	HLA-B35:01	EAEEQLPPF	0.9009	0.7968	0.32	39.89	0.2264	29.27	1/982	1/7748
SNV	Breast	NEK5_P61L_9	HLA-A02:01	ILLEKMKHL	0.9741	0.5412	0.4373	6.44	0.1226	3.07	1/982	1/7748
SNV	Breast	ZNF496_R72L_11	HLA-A02:01	RLWDLCGGWLL	0.9977	0.7627	0.8095	12.95	0.1797	22.9	1/982	1/7748
SNV	Breast	ABCC5_E1363Q_5	HLA-C08:02	AMDTQTDLL	0.9994	0.9739	0.0451	148.69	0.0795	53.05	1/982	1/7748
SNV	Breast	ANGEL2_R283I_4	HLA-C08:02	LLDIDNVGL	0.9994	0.9457	0.0475	61.95	0.0535	18.29	1/982	1/7748
SNV	Breast	ANGEL2_R283I_2	HLA-C08:02	DIDNVGLVL	0.9997	0.9786	0.1045	155.82	0.0834	18.29	1/982	1/7748
SNV	Breast	CASP8AP2_H849Y_1	HLA-B08:01	YLRPIPEAI	0.897	0.5968	0.0508	90.87	0.1616	9.71	1/982	1/7748
SNV	Breast	F5_S1367F_1	HLA-C08:02	FLDLSQTNL	0.9999	0.9821	0.0111	3.67	0.0081	1.33	1/982	1/7748
SNV	Breast	NUP155_A851T_1	HLA-C08:02	TVDGISLHL	0.9999	0.986	0.004	6.84	0.0153	21.13	1/982	1/7748
SNV	Breast	SH3RF1_E345K_5	HLA-B14:02	ARISKLSGL	0.9722	0.5295	0.1215	269.16	0.0643	57.64	1/982	1/7748
SNV	Breast	TEX10_E466Q_7	HLA-B14:02	IRKFVTQTL	0.9947	0.8305	0.0179	97.92	0.0323	12.22	1/982	1/7748
SNV	Breast	TEX10_E466Q_7	HLA-C07:01	IRKFVTQTL	0.9939	0.7125	0.0168	26.82	0.0452	12.22	1/982	1/7748
SNV	Breast	XRRA1_D309H_6	HLA-C08:02	MLEDSHEQL	0.9999	0.9473	0.0269	119.21	0.0694	4.06	1/982	1/7748
SNV	Breast	APP_E564Q_7	HLA-A02:01	IQDEVDQLL	0.8405	0.545	0.9689	219.69	0.5221	545.89	1/982	1/7748
SNV	Breast	APP_E564Q_7	HLA-C08:02	IQDEVDQLL	0.9995	0.9751	0.0341	64.84	0.0547	545.89	1/982	1/7748
SNV	Breast	ARAP3_Q609H_1	HLA-C07:02	HYPDHSQLL	0.8892	0.9263	0.0447	12.73	0.0585	5.83	1/982	1/7748
SNV	Breast	BCKDK_A34S_1	HLA-C08:02	STDTHHVEM	0.9999	0.9423	0.0046	12.78	0.0228	27.54	1/982	1/7748
SNV	Breast	C5AR1_F64L_9	HLA-A02:01	ALVVWVTAL	0.8975	0.5589	0.1535	200.85	0.5076	31.25	1/982	1/7748
SNV	Breast	CBLB_H257Y_3	HLA-C07:02	VTYPGYMAF	0.9413	0.9755	0.8621	10.57	0.0514	17.78	1/982	1/7748
SNV	Breast	DIP2A_V1072M_1	HLA-B14:01	MRPPHPQNL	0.9987	0.9402	0.0425	68.46	0.0235	20.02	1/982	1/7748
SNV	Breast	DIP2A_V1072M_1	HLA-C07:02	MRPPHPQNL	0.9303	0.8631	0.0021	2.39	0.0073	20.02	1/982	1/7748
SNV	Breast	DNMT1_P773L_8	HLA-C08:02	IPDDSSKLL	0.9991	0.9566	0.0619	402.09	0.1246	65.68	1/982	1/7748
SNV	Breast	DYNC2H1_R3489Q_6	HLA-A02:01	SLDQEQDAYL	0.9513	0.6541	0.7911	52.95	0.3098	3.98	1/982	1/7748
SNV	Breast	FAM160A2_N755K_5	HLA-A02:01	NMLQKSVYV	0.991	0.7394	0.1243	20.49	0.2194	10.23	1/982	1/7748
SNV	Breast	FAM65A_Q300H_4	HLA-A02:01	ALPHVVAV	0.9943	0.8871	1.2981	468.51	0.6611	12.39	1/982	1/7748
SNV	Breast	FAM65A_Q300H_8	HLA-A02:01	DLFAALPHV	0.9604	0.7026	0.2276	23.81	0.2321	12.39	1/982	1/7748
SNV	Breast	FAM65A_Q300H_5	HLA-A02:01	AALPHVVAV	0.9775	0.8546	0.4794	70.24	0.3461	12.39	1/982	1/7748
SNV	Breast	IVNS1ABP_R175W_3	HLA-B07:02	LPWLKLEVM	0.9973	0.5344	0.1145	128.99	0.2842	100.98	1/982	1/7748
SNV	Breast	KAT6A_S1752I_2	HLA-A02:01	FILAKLQQL	0.9942	0.7227	0.1676	10.36	0.1615	71.68	1/982	1/7748
SNV	Breast	KAT6A_S1752I_9	HLA-C08:02	YSQPSATFI	0.9679	0.9768	0.1701	469.25	0.1364	71.68	1/982	1/7748
SNV	Breast	KCNG3_L302F_9	HLA-C07:02	MRIFWVIKF	0.9119	0.9016	0.0379	35.34	0.108	1.07	1/982	1/7748
SNV	Breast	LIMK2_G209V_7	HLA-A02:01	RILEINVTPV	0.9966	0.7495	0.534	185.41	0.4943	180.94	1/982	1/7748
SNV	Breast	MARCH6_L280V_9	HLA-A02:01	LTWERMLGV	0.9523	0.801	0.2276	328.1	0.5872	57.07	1/982	1/7748
SNV	Breast	MARCH6_L280V_2	HLA-A02:01	GVDGSLVFL	0.917	0.621	0.6625	111.57	0.4074	57.07	1/982	1/7748
SNV	Breast	MARCH6_L280V_2	HLA-C08:02	GVDGSLVFL	0.9997	0.9353	0.0564	126.37	0.0715	57.07	1/982	1/7748
SNV	Breast	METTL3_M393V_9	HLA-A02:01	ILGKFAVVV	0.9922	0.7645	0.2375	30.14	0.2525	22.19	1/982	1/7748
SNV	Breast	MYCBP2_L3118V_5	HLA-C07:02	SKSPVPLTL	0.8654	0.9586	0.106	132.42	0.2238	61.03	1/982	1/7748
SNV	Breast	PRSS12_L698P_4	HLA-C07:02	YHTPVPEEF	0.8838	0.9707	0.0496	36.77	0.1106	4.9	1/982	1/7748
SNV	Breast	RCC2_F485L_6	HLA-A02:01	TLDGILSEQV	0.9883	0.6344	0.7225	94.15	0.3838	336.48	1/982	1/7748
SNV	Breast	RHBDF2_S230Y_1	HLA-B14:01	YHLPRRKRM	0.8567	0.6738	0.1338	254.95	0.0628	33.33	1/982	1/7748
SNV	Breast	RHBDF2_S230Y_1	HLA-C07:02	YHLPRRKRM	0.6127	0.9577	0.3186	53.65	0.1391	33.33	1/982	1/7748
SNV	Breast	SEC24A_G682V_6	HLA-A02:01	ALDCSVQQV	0.9974	0.5184	0.3157	18.25	0.2096	68.57	1/982	1/7748
SNV	Breast	TRAPPC8_P479R_4	HLA-B07:02	APRRYPAHYM	0.9986	0.6889	0.1703	5.12	0.0745	36.69	1/982	1/7748
SNV	Breast	TRAPPC8_P479R_2	HLA-C07:02	RRYPAHYM	0.9974	0.9342	0.3874	37.64	0.1121	36.69	1/982	1/7748
SNV	Breast	TTC17_E518K_9	HLA-B07:02	YPRVPVGGKL	0.9984	0.5378	0.0848	1.62	0.0242	37.67	1/982	1/7748
SNV	Breast	UNC5C_S535I_5	HLA-B14:01	TAFGIFNSL	0.9779	0.8291	0.2051	378.43	0.075	1.2	1/982	1/7748
SNV	Breast	WLS_L160P_5	HLA-B07:02	VPRKPKCTF	0.9987	0.6173	0.0271	2	0.0326	25.32	1/982	1/7748
SNV	Breast	ZNF462_P867A_8	HLA-C07:02	THYQRMHAY	0.7629	0.888	0.1675	19.35	0.0756	15.65	1/982	1/7748
SNV	Breast	ZNF462_P867A_5	HLA-C07:02	QRMHAYIKF	0.9918	0.9362	0.052	26.1	0.0904	15.65	1/982	1/7748
SNV	Breast	ZNF462_P867A_3	HLA-C07:02	MHAYIKFSF	0.8679	0.8883	1.1367	317.69	0.3305	15.65	1/982	1/7748
SNV	Breast	ZNF462_P867A_1	HLA-C07:02	AYIKFSFRY	0.5713	0.6628	1.1101	99.84	0.1941	15.65	1/982	1/7748
SNV	Breast	DDR2_R332Q_5	HLA-B35:02	NPSAQFVTV	0.9532	0.8397	0.0331	38.79	0.0597	42.14	1/982	1/7748
SNV	Breast	DDR2_R332Q_10	HLA-C05:01	VLDDVNPSAQF	1	0.986	0.0897	72.55	0.1956	42.14	1/982	1/7748
SNV	Breast	LPAR5_A41V_10	HLA-A02:01	VLAAGLPLNV	0.9966	0.627	0.4121	10.35	0.1614	7.84	1/982	1/7748
SNV	Breast	SDK1_R1969Q_6	HLA-A02:01	SLDKLQQGV	0.9858	0.6342	0.3713	11.29	0.1683	2.95	1/982	1/7748
SNV	Breast	SDK1_R1969Q_6	HLA-C05:01	SLDKLQQGV	0.9998	0.974	0.0819	61.04	0.1835	2.95	1/982	1/7748
SNV	Breast	C10orf88_L393I_1	HLA-C05:01	IMDYIDQRI	0.9999	0.9534	0.1651	3.04	0.0402	7.18	1/982	1/7748
SNV	Breast	MYH14_D774Y_3	HLA-A02:01	ELYPNLYRV	0.9804	0.6046	0.1304	2.72	0.0589	30.07	1/982	1/7748
SNV	Breast	MYH14_D774Y_9	HLA-B15:01	KMIQALELY	0.9997	0.8563	0.0278	3.6	0.0353	30.07	1/982	1/7748
SNV	Breast	MYH14_D774Y_6	HLA-C03:04	QALELYPNL	0.9997	0.9756	0.6211	395.45	0.4647	30.07	1/982	1/7748
SNV	Breast	ACSL4_I669M_6	HLA-A31:01	RFEIPMKVR	0.9159	0.7619	1.1083	255.25	0.3273	41.97	1/982	1/7748
SNV	Breast	ACSL4_I669M_7	HLA-B27:05	ERFEIPMKV	0.9996	0.8887	0.1113	4.05	0.1262	41.97	1/982	1/7748
SNV	Breast	ACSL4_I669M_7	HLA-B27:05	ERFEIPMKVR	0.9981	0.7524	0.5485	30.47	0.2841	41.97	1/982	1/7748
SNV	Breast	ACSL4_I669M_7	HLA-B27:05	ERFEIPMKVRL	0.9999	0.8332	0.1824	237.51	0.5043	41.97	1/982	1/7748
SNV	Breast	CCDC88C_D873N_4	HLA-A31:01	RALNKELAR	0.9839	0.53	0.1139	14.72	0.0612	22.22	1/982	1/7748
SNV	Breast	CNNM4_F394L_9	HLA-B27:05	IRSDAILDL	0.9967	0.9046	0.368	3.82	0.1204	62.99	1/982	1/7748
SNV	Breast	CNNM4_F394L_10	HLA-B27:05	MIRSDAILDL	0.9731	0.7785	1.7029	327.72	0.5463	62.99	1/982	1/7748
SNV	Breast	FAM20B_R129Q_5	HLA-B27:05	KRYSQDHVV	0.9986	0.6084	0.1824	45.02	0.3222	83.69	1/982	1/7748
SNV	Breast	LRCH3_S226L_6	HLA-B27:05	IRLDFLCNK	0.9991	0.8171	0.4199	43.44	0.3184	19.17	1/982	1/7748
SNV	Breast	PGR_E723K_1	HLA-B27:05	KRQLLSVVK	0.9993	0.7062	0.252	132.52	0.4388	118.47	1/982	1/7748
SNV	Breast	PGR_E723K_1	HLA-B27:05	KRQLLSVVKW	0.9996	0.5467	0.5683	443.5	0.5857	118.47	1/982	1/7748
SNV	Breast	PRDM5_R509W_3	HLA-A31:01	HIWSHTGER	0.9865	0.7527	0.1628	211.74	0.3005	2.04	1/982	1/7748
SNV	Breast	PTPRN2_N793Y_9	HLA-B27:05	SRVLLKAEY	0.9996	0.9237	0.0902	2.26	0.0726	3.24	1/982	1/7748
SNV	Breast	TRIM33_C975R_2	HLA-B27:05	YRHELSIEF	0.9997	0.938	0.0171	1.34	0.026	32.84	1/982	1/7748
SNV	Breast	TRIM33_C975R_4	HLA-C14:02	YLYRHELSI	0.6204	0.9438	0.3629	158.83	0.6235	32.84	1/982	1/7748
SNV	Breast	TRIM33_C975R_3	HLA-C14:02	LYRHELSIEF	0.9426	0.9693	1.2212	483.18	1.0644	32.84	1/982	1/7748
SNV	Breast	TYW1B_A54V_5	HLA-C14:02	VLAEVVTSL	0.9927	0.9868	0.2054	28.29	0.2579	7.76	1/982	1/7748
SNV	Breast	TYW1B_A54V_5	HLA-C01:02	VLAEVVTSL	0.9916	0.9791	0.0757	177.34	0.0144	7.76	1/982	1/7748
SNV	Breast	WDR66_D971H_7	HLA-B27:05	LRSQGIHTM	0.9997	0.8711	0.1549	8.8	0.1838	2	1/982	1/7748
SNV	Breast	ZFYVE9_I572M_1	HLA-A31:01	MSVPFGGAR	0.9432	0.7752	0.2148	103.87	0.2155	26.66	1/982	1/7748
SNV	Breast	ZFYVE9_I572M_9	HLA-C14:02	KVVASLPSM	0.5871	0.9791	1.6354	434.53	1.0131	26.66	1/982	1/7748
SNV	Breast	ANK3_P3037R_8	HLA-A24:02	SYVGLCPRL	0.9957	0.5975	0.0469	12.78	0.2365	5.95	1/982	1/7748
SNV	Breast	FRG1_D74N_6	HLA-C14:02	YIHALNNGL	0.5224	0.9347	0.6298	115.88	0.5402	28.44	1/982	1/7748
SNV	Breast	FRG1_D74N_3	HLA-C14:02	ALNNGLFTL	0.8671	0.9526	0.8856	172.42	0.6471	28.44	1/982	1/7748
SNV	Breast	HECW2_R20Q_8	HLA-C07:01	RRRNPQMQY	0.9837	0.6939	0.2138	139.9	0.1025	6.9	1/982	1/7748
SNV	Breast	HECW2_R20Q_7	HLA-C07:01	RRNPQMQYTL	0.9994	0.7966	0.1285	439.85	0.1656	6.9	1/982	1/7748
SNV	Breast	ITPR2_Q122L_7	HLA-C14:02	KYSNVILL	0.975	0.9154	0.7394	199.29	0.6889	62.85	1/982	1/7748
SNV	Breast	LGR4_L237F_5	HLA-C14:02	NYNNFGEF	0.9782	0.9251	0.8205	424.52	1.0019	35.24	1/982	1/7748
SNV	Breast	MICALL1_R64P_6	HLA-C14:02	VFENNPLAF	0.897	0.9002	0.0566	2.35	0.03	38.31	1/982	1/7748
SNV	Breast	MS4A7_N214I_4	HLA-C14:02	YSNIPGSSF	0.9798	0.9541	0.2691	12.84	0.1654	19.1	1/982	1/7748
SNV	Breast	MS4A7_N214I_5	HLA-C14:02	LYSNIPGSSF	0.9778	0.9397	0.1311	32.41	0.2804	19.1	1/982	1/7748
SNV	Breast	NT5E_R545Q_8	HLA-A24:02	IYPAVEGQI	0.9906	0.6579	0.2319	4.04	0.1233	11.17	1/982	1/7748
SNV	Breast	ORC2_G550R_2	HLA-C07:01	KRTDGVEYL	0.9944	0.5542	0.0096	32.38	0.0499	34.43	1/982	1/7748
SNV	Breast	ORC2_G550R_2	HLA-C14:02	KRTDGVEYL	0.6665	0.9279	1.5514	249.88	0.7826	34.43	1/982	1/7748
SNV	Breast	PC_S576A_7	HLA-C07:01	FRDAHQALL	0.9959	0.8633	0.0149	7.37	0.0133	14.99	1/982	1/7748
SNV	Breast	PC_S576A_8	HLA-C14:02	TFRDAHQAL	0.5253	0.9854	0.0585	2.07	0.023	14.99	1/982	1/7748
SNV	Breast	PC_S576A_7	HLA-C14:02	FRDAHQALL	0.9791	0.9793	0.3839	37.29	0.3037	14.99	1/982	1/7748
SNV	Breast	PC_S576A_8	HLA-C14:02	TFRDAHQALL	0.9538	0.9852	0.8205	259.77	0.7996	14.99	1/982	1/7748
SNV	Breast	PI15_T129I_3	HLA-C07:01	VRIGRYRSI	0.993	0.5419	0.1809	50.49	0.0657	279.77	1/982	1/7748
SNV	Breast	PLIN4_L1035H_6	HLA-C14:02	ATHTGHSTF	0.5563	0.9257	0.2474	95.66	0.4916	4.35	1/982	1/7748
SNV	Breast	PPP6C_T301M_9	HLA-C07:01	RVIPPRTTM	0.9764	0.8028	0.6154	403.83	0.1596	79.91	1/982	1/7748
SNV	Breast	PPP6C_T301M_9	HLA-C14:02	RVIPPRTTM	0.8662	0.9798	0.1396	3.92	0.0604	79.91	1/982	1/7748
SNV	Breast	SDCBP2_Y44H_3	HLA-C14:02	VLHPNLAEL	0.9545	0.9599	0.0665	23.98	0.235	4.4	1/982	1/7748
SNV	Breast	SERPINE1_P250A_9	HLA-C14:02	HYYDILELAY	0.7324	0.9504	0.3034	14.84	0.1777	45.27	1/982	1/7748
SNV	Breast	SERPINE1_P250A_2	HLA-C14:02	LAYHGDTLSM	0.9888	0.9382	1.4963	197.8	0.6867	45.27	1/982	1/7748
SNV	Breast	SERPINE1_P250A_1	HLA-C14:02	AYHGDTLSMF	0.9486	0.9453	0.1508	36.35	0.2994	45.27	1/982	1/7748
SNV	Breast	SH3BP4_R243H_5	HLA-C07:01	FRSKHSYSL	0.9943	0.5207	0.0021	4.33	0.0087	8.8	1/982	1/7748
SNV	Breast	SSC5D_P1271H_6	HLA-C14:02	FTTMQHTTM	0.9885	0.9698	1.3206	285.14	0.8379	3.5	1/982	1/7748
SNV	Breast	TCEB1_S67L_6	HLA-C07:01	FREIPLHVL	0.9824	0.6983	0.1215	39.69	0.0571	82.61	1/982	1/7748
SNV	Breast	TCEB1_S67L_6	HLA-C14:02	FREIPLHVL	0.6947	0.9757	0.8393	95.5	0.4912	82.61	1/982	1/7748
SNV	Breast	UBE2R2_E112K_1	HLA-C07:01	KRWNPTQNV	0.9728	0.8166	0.1144	169.23	0.1096	213.74	1/982	1/7748
SNV	Breast	UNC45A_Y731C_7	HLA-B51:01	FPGERICEV	0.9638	0.5588	0.0435	57.99	0.1879	17.83	1/982	1/7748
SNV	Breast	USP34_T1582I_3	HLA-C14:02	RLIEVFLVL	0.9539	0.9774	0.4035	255.85	0.7929	54.79	1/982	1/7748
SNV	Breast	WDR62_L560V_5	HLA-C14:02	SRDRVIHVL	0.7735	0.8614	0.7318	43.82	0.331	12.25	1/982	1/7748
SNV	Breast	AAK1_E830Q_7	HLA-C03:03	KADVAVQSL	0.9995	0.9884	0.0597	17.85	0.1287	6.26	1/982	1/7748
SNV	Breast	ABT1_H155Y_9	HLA-B15:01	YLHRFTWSY	0.9962	0.877	0.0182	319.28	0.4422	15.53	1/982	1/7748
SNV	Breast	ADCY9_I470M_3	HLA-B15:01	GMMKAIEQF	0.9989	0.9588	0.0278	4.55	0.047	13.41	1/982	1/7748
SNV	Breast	ARFIP2_E125K_6	HLA-C03:03	RTVDLKLEL	0.9993	0.993	0.1442	33.47	0.1724	26.11	1/982	1/7748
SNV	Breast	BIRC6_S2045F_9	HLA-B15:01	LLHASNGHF	0.9972	0.7238	0.0075	14.93	0.1207	35.32	1/982	1/7748
SNV	Breast	CAPN10_K84N_5	HLA-C03:03	AALQNSRHL	0.9994	0.9905	0.1138	154.68	0.3261	5.24	1/982	1/7748
SNV	Breast	CDC73_S345Y_9	HLA-B15:01	AQPVPRPVY	0.9997	0.9457	0.2361	5.86	0.0572	42.87	1/982	1/7748
SNV	Breast	CDC73_S345Y_10	HLA-B15:01	AAQPVPRPVY	0.9992	0.9396	0.6244	27.25	0.1637	42.87	1/982	1/7748
SNV	Breast	CKMT1A_D368H_8	HLA-C03:03	AATGGVFHI	0.9894	0.9945	0.1417	498.77	0.5025	2.6	1/982	1/7748
SNV	Breast	CNOT1_E898K_8	HLA-B15:01	MLRNLFEKY	0.9995	0.9715	0.0481	12.31	0.1092	43.02	1/982	1/7748
SNV	Breast	DCHS1_H2634Y_5	HLA-B51:01	DPGPYGLV	0.9877	0.7433	0.4795	392.82	0.4021	11.39	1/982	1/7748
SNV	Breast	DCHS1_L1969V_10	HLA-B51:01	FPTSPLRLRV	0.8775	0.5245	0.4392	214.46	0.3164	11.39	1/982	1/7748
SNV	Breast	DCHS1_L1969V_2	HLA-B15:01	RVPRPGPSF	0.9863	0.9165	0.5175	136.35	0.3213	11.39	1/982	1/7748
SNV	Breast	DCHS1_L1969V_2	HLA-C03:03	RVPRPGPSF	0.7052	0.9902	0.7803	491.97	0.5	11.39	1/982	1/7748
SNV	Breast	DCP1A_D520N_6	HLA-B15:01	HLIKNNSSF	0.9994	0.809	0.0094	2.46	0.0208	20.35	1/982	1/7748
SNV	Breast	DENND5A_L415F_9	HLA-B15:01	FVQEVSEIF	0.998	0.9223	0.2215	288.77	0.4251	65.16	1/982	1/7748
SNV	Breast	DENND5A_L415F_9	HLA-C03:03	FVQEVSEIF	0.9986	0.9925	0.1264	238.03	0.3852	65.16	1/982	1/7748
SNV	Breast	DIAPH2_P613S_2	HLA-C03:03	VSPPPGISL	0.9997	0.9884	0.0329	10.49	0.0857	8.32	1/982	2/7748
SNV	Breast	FMOD_Q34H_5	HLA-B15:01	YLRSHQSTY	0.9998	0.8908	0.003	1.62	0.0076	29.54	1/982	1/7748
SNV	Breast	FMOD_Q34H_1	HLA-B15:01	HQSTYYDPY	0.9985	0.8167	0.0933	339.52	0.4526	29.54	1/982	1/7748
SNV	Breast	FMOD_Q34H_5	HLA-B15:01	YLRSHQSTYY	0.9999	0.8714	0.2722	42	0.1992	29.54	1/982	1/7748
SNV	Breast	GNPAT_R163Q_7	HLA-B15:01	VLLPSHQSY	0.9995	0.8208	0.0381	1.95	0.0113	56.56	1/982	1/7748
SNV	Breast	GNPAT_R163Q_8	HLA-B15:01	VVLLPSHQSY	0.9991	0.8351	0.5175	54.01	0.2262	56.56	1/982	1/7748
SNV	Breast	KIAA1109_D2198N_3	HLA-C03:03	SANGAEFEF	0.996	0.994	0.4039	173.82	0.3421	22.08	1/982	1/7748
SNV	Breast	LDLR_C197Y_10	HLA-B15:01	YVFQGDSSPY	0.9997	0.9282	0.2215	6.86	0.0651	38.44	1/982	1/7748
SNV	Breast	LRBA_L654V_6	HLA-B15:01	KEMLSVRAF	0.9555	0.9158	0.4353	423.11	0.49	61.98	1/982	1/7748
SNV	Breast	MADD_D1326N_1	HLA-C03:03	NAFLDAVML	0.9986	0.9922	0.342	154.62	0.3261	21.82	1/982	1/7748
SNV	Breast	MAP9_E434K_9	HLA-A03:01	AAVYQEWLKK	0.9228	0.5274	0.5687	82.09	0.2633	5.12	1/982	1/7748
SNV	Breast	MMAA_E161K_8	HLA-B15:01	AGKSTFIKY	0.9899	0.7043	0.4261	204.32	0.3741	6.42	1/982	1/7748
SNV	Breast	MTF1_S687L_9	HLA-C03:03	SSAPVPGSL	0.9997	0.987	0.0295	6.73	0.0614	15.34	1/982	1/7748
SNV	Breast	MYH9_E498K_7	HLA-B15:01	YQREGIKWNF	0.9999	0.9409	0.6244	5.52	0.055	377.66	1/982	1/7748
SNV	Breast	NAGK_R291T_7	HLA-B51:01	LALTQGTEI	0.9897	0.8691	0.1451	43.07	0.166	16.73	1/982	1/7748
SNV	Breast	NAGK_R291T_7	HLA-C03:03	LALTQGTEI	0.9835	0.9896	0.1474	41.73	0.188	16.73	1/982	1/7748
SNV	Breast	NBPF12_E125Q_4	HLA-C03:03	SLNQHLQAL	0.9761	0.9916	0.2749	225.42	0.3777	6.91	2/982	3/7748
SNV	Breast	NIPA1_Q80H_5	HLA-B15:01	MAVGHIGNF	0.9941	0.8064	0.1005	193.71	0.3672	8.89	1/982	1/7748
SNV	Breast	NIPA1_Q80H_5	HLA-C03:03	MAVGHIGNF	0.9981	0.9746	0.0559	129.72	0.302	8.89	1/982	1/7748
SNV	Breast	OSBPL11_D652N_3	HLA-C03:03	YVNLTKLAV	0.922	0.9868	0.749	232.11	0.3817	18.25	1/982	1/7748
SNV	Breast	PASK_S956F_9	HLA-B15:01	ASLPGSTHF	0.9962	0.9564	0.0902	16.68	0.1278	3.87	1/982	1/7748
SNV	Breast	PASK_S956F_9	HLA-C03:03	ASLPGSTHF	0.9972	0.9964	0.084	157.44	0.3285	3.87	1/982	1/7748
SNV	Breast	PASK_S956F_4	HLA-C03:03	STHFTAAEL	0.9961	0.9888	0.0675	340.43	0.4404	3.87	1/982	1/7748
SNV	Breast	PLEKHA7_S624L_6	HLA-C03:03	HAVKNLSHV	0.9832	0.9816	0.0794	388.1	0.4616	15.17	1/982	1/7748
SNV	Breast	PLEKHG1_P549L_9	HLA-B15:01	ALFPSRRSL	0.9701	0.9256	0.9225	370.46	0.4674	7.86	1/982	1/7748
SNV	Breast	PLEKHG1_P549L_9	HLA-C03:03	ALFPSRRSL	0.8974	0.9918	0.4631	51.57	0.205	7.86	1/982	1/7748
SNV	Breast	RAPGEF5_H206Y_9	HLA-B15:01	KILGMHRRY	0.954	0.7883	0.8992	197.39	0.3696	13.05	1/982	1/7748
SNV	Breast	SEC61A1_S386F_1	HLA-C03:03	FAKDVAKQL	0.9999	0.9828	0.0126	7.43	0.0657	209.87	1/982	1/7748
SNV	Breast	SENP7_F1003L_2	HLA-B15:01	SLFKDPIVNF	0.9997	0.9109	0.423	30.5	0.1719	12.18	1/982	1/7748
SNV	Breast	SENP7_F1003L_9	HLA-C03:03	YLLQYVESL	0.9577	0.9929	0.6385	116.76	0.2906	12.18	1/982	1/7748
SNV	Breast	SLC5A3_L55V_7	HLA-B51:01	VAIGASVFV	0.9902	0.6617	0.2442	115.67	0.2439	13.86	1/982	1/7748
SNV	Breast	SLC5A3_L55V_8	HLA-B15:01	WVAIGASVF	0.9925	0.891	0.1845	188.07	0.3633	13.86	1/982	1/7748
SNV	Breast	SLC5A3_L55V_7	HLA-C03:03	VAIGASVFV	0.9895	0.9915	0.2585	60.36	0.2216	13.86	1/982	1/7748
SNV	Breast	SOX13_I7M_7	HLA-C03:03	SPMSAQLAL	0.9958	0.9755	1.3346	143.59	0.3159	25.13	1/982	1/7748
SNV	Breast	SPEN_D168N_8	HLA-B15:01	RTRHYDQNY	0.9948	0.879	0.4261	65.17	0.2465	33.5	1/982	1/7748
SNV	Breast	THADA_L911V_2	HLA-B15:01	SVLQAAAAF	0.9794	0.9834	0.0225	13.42	0.1144	8.52	1/982	1/7748
SNV	Breast	THADA_L911V_2	HLA-C03:03	SVLQAAAAF	0.9425	0.9957	0.4456	150.62	0.3225	8.52	1/982	1/7748
SNV	Breast	TSHZ2_H898Y_9	HLA-B15:01	GLSMTTISY	0.9993	0.8171	0.0933	16.47	0.1268	2.09	1/982	1/7748
SNV	Breast	TTC30B_V251M_6	HLA-B15:01	HQTALMEAF	0.9993	0.9212	0.0695	94.45	0.2812	12.84	1/982	1/7748
SNV	Breast	ZBTB43_R387T_3	HLA-B15:01	SQTDRHMSM	0.9969	0.8917	0.2485	23.41	0.1527	10.27	1/982	1/7748
SNV	Breast	ZBTB43_R387T_3	HLA-C03:03	SQTDRHMSM	0.9857	0.9851	1.0648	460.89	0.4894	10.27	1/982	1/7748
SNV	Breast	ZFHX4_D3048H_8	HLA-B15:01	SQLDREKHY	0.9971	0.7922	0.1041	5.71	0.0562	1.63	1/982	1/7748
SNV	Breast	ZNF337_R271Q_2	HLA-B15:01	GQGYTSKSY	0.9992	0.7691	0.3957	4.13	0.0417	2.85	1/982	1/7748
SNV	Breast	ZNF532_L857V_9	HLA-C03:03	VVYSDVAAV	0.9633	0.9899	0.6468	26.64	0.1587	11.74	1/982	1/7748
SNV	Breast	CHRNA10_R46K_1	HLA-B07:02	KPVADTDQTL	0.947	0.5192	0.1859	68.73	0.2328	2.93	1/982	1/7748
SNV	Breast	CLEC17A_R99S_4	HLA-B07:02	APPSPPRAA	0.9977	0.7054	0.1414	265.75	0.3463	3.19	1/982	1/7748
SNV	Breast	PPM1F_D342N_3	HLA-B35:01	EANAASRAL	0.9126	0.8165	0.9495	158.11	0.3544	15.79	1/982	1/7748
SNV	Breast	SEC23B_D566H_5	HLA-C07:02	YNKEHPTSF	0.7271	0.968	0.052	277.32	0.3104	84.78	1/982	1/7748
SNV	Breast	SGK223_R50K_6	HLA-B07:02	GPPQPKAGSL	0.9979	0.58	0.0974	33.66	0.183	38.25	1/982	1/7748
SNV	Breast	SGK223_R50K_7	HLA-B07:02	AGPPQPKAGSL	0.9994	0.6585	1.0619	297.26	0.3562	38.25	1/982	1/7748
SNV	Breast	DCPS_I62F_7	HLA-C07:02	SARDKIFFL	0.7444	0.8954	1.8578	331.71	0.3369	13.63	1/982	1/7748
SNV	Breast	TMPRSS6_S326F_8	HLA-C07:02	YYDPFVLF	0.9993	0.8317	0.2455	92.58	0.1867	4.44	1/982	1/7748
SNV	Breast	TMPRSS6_S326F_9	HLA-C07:02	SYYDPFVLF	0.7906	0.9123	0.0044	1.77	0.0048	4.44	1/982	1/7748
SNV	Breast	TMPRSS6_S326F_8	HLA-C07:02	YYDPFVLFV	0.8134	0.861	0.2402	40.92	0.1176	4.44	1/982	1/7748
SNV	Breast	TMPRSS6_S326F_8	HLA-C05:01	YYDPFVLFV	0.9967	0.8196	0.1711	18.04	0.1184	4.44	1/982	1/7748
SNV	Breast	WDR13_T152M_7	HLA-B07:02	RAMAGDMSL	0.9747	0.5635	0.1588	57.99	0.2184	27.23	1/982	1/7748
SNV	Breast	WDR13_T152M_7	HLA-C05:01	RAMAGDMSL	0.9614	0.96	1.0097	244.55	0.313	27.23	1/982	1/7748
SNV	Breast	CDH1_G278R_5	HLA-B08:01	GALPRTSVM	0.9852	0.6019	0.2626	147.52	0.2066	21.14	1/982	1/7748
SNV	Breast	CDH1_G278R_5	HLA-C12:02	GALPRTSVM	0.998	0.9853	0.1889	52.13	0.1134	21.14	1/982	1/7748
SNV	Breast	EPHA2_V338M_9	HLA-C12:02	SAPHYLTAM	0.9954	0.9626	0.0236	163.9	0.2437	7.22	1/982	1/7748
SNV	Breast	ITGAM_M177T_6	HLA-C12:02	FVSTVTEQL	0.9974	0.9699	0.0426	60.06	0.1229	18.54	1/982	1/7748
SNV	Breast	SLC30A1_A303P_7	HLA-A02:01	IINSTHPSV	0.99	0.7648	0.6371	475.85	0.6645	65.58	1/982	1/7748
SNV	Breast	SLC30A1_A303P_7	HLA-B15:01	IINSTHPSVY	0.9998	0.9332	0.4444	325.78	0.4456	65.58	1/982	1/7748
SNV	Breast	ATP2A1_R529Q_3	HLA-C05:01	YVQVGTTRV	0.9824	0.9153	0.874	95.82	0.2175	3.47	1/982	1/7748
SNV	Breast	CDC73_H316L_7	HLA-A68:02	DTMGTYLGM	0.9753	0.7363	0.1995	65.13	0.1814	47.16	1/982	1/7748
SNV	Breast	CDC73_H316L_9	HLA-C05:01	KIDTMGTYL	0.9998	0.9758	0.0147	1.71	0.0188	47.16	1/982	1/7748
SNV	Breast	COL7A1_E492K_8	HLA-A68:02	YTLLEGHKV	0.9331	0.8055	0.1251	132.88	0.2586	21.07	1/982	1/7748
SNV	Breast	NR3C2_R18Q_9	HLA-B44:02	PEGLDMERQW	0.9782	0.7385	0.8206	248.53	0.3406	9.29	1/982	1/7748
SNV	Breast	ZCCHC2_A757V_8	HLA-C05:01	MLVPSPVVI	0.7682	0.9762	0.4	280.25	0.3302	10.09	1/982	1/7748
SNV	Breast	KHK_V188L_8	HLA-B15:01	QLFGYGDLVF	0.9994	0.8911	0.5766	250.1	0.4007	9.78	1/982	1/7748
SNV	Breast	PIK3CA_D520V_6	HLA-C06:02	NRLARVNEL	0.5055	0.9908	0.0771	15.65	0.0342	18.09	1/982	1/7748
SNV	Breast	ROBO4_G425V_2	HLA-A68:01	TVAGAGEPSR	0.9957	0.7516	0.2888	12.91	0.1385	12.58	1/982	1/7748
SNV	Breast	ACTB_I75L_7	HLA-B35:08	YPIEHGLVT	0.9611	0.8296	0.1191	59.09	0.1408	5242.48	1/982	1/7748
SNV	Breast	BRINP1_M577I_1	HLA-B35:08	IPFGEFGY	0.9935	0.8932	0.8968	307.95	0.2717	2.76	1/982	1/7748
SNV	Breast	CDC37L1_F279I_9	HLA-A32:01	RLYSQSQSI	0.9938	0.877	0.0612	5.68	0.0276	20.83	1/982	1/7748
SNV	Breast	CDC37L1_F279I_9	HLA-C12:03	RLYSQSQSI	0.8496	0.9455	1.9056	74.34	0.4501	20.83	1/982	1/7748
SNV	Breast	FMOD_V347L_9	HLA-C12:03	VVNFSKLQL	0.9653	0.9197	0.9714	157.15	0.651	319.76	1/982	1/7748
SNV	Breast	FMOD_V347L_6	HLA-C12:03	FSKLQLLRL	0.9833	0.948	0.2609	366.14	0.9512	319.76	1/982	1/7748
SNV	Breast	PTPRA_T106M_8	HLA-A32:01	ITISPNGMW	0.8791	0.902	0.3222	226.31	0.2108	84.57	1/982	1/7748
SNV	Breast	PTPRA_T106M_2	HLA-A32:01	GMWLPDNQF	0.8057	0.9853	0.5926	100.03	0.1437	84.57	1/982	1/7748
SNV	Breast	PTPRA_T106M_7	HLA-C12:03	TISPNGMWL	0.8209	0.963	1.2511	366.93	0.952	84.57	1/982	1/7748
SNV	Breast	ADARB2_H420N_1	HLA-A02:01	NLSDQGLVV	0.9641	0.504	0.4654	265.88	0.5531	1.05	1/982	1/7748
SNV	Breast	CCDC120_R84W_9	HLA-B44:02	GERPQLVRW	0.9992	0.7494	0.0135	1.94	0.0347	12.82	1/982	1/7748
SNV	Breast	CKAP5_M722I_9	HLA-C05:01	WTAEQVVSI	0.9946	0.9317	0.9465	415.9	0.3801	143.26	1/982	1/7748
SNV	Breast	CKAP5_M722I_9	HLA-C03:04	WTAEQVVSI	0.9966	0.9877	0.501	114.24	0.2883	143.26	1/982	1/7748
SNV	Breast	CLEC5A_A124V_8	HLA-A02:01	FLQDITDV	0.9943	0.7007	1.2279	429.4	0.6419	8.47	1/982	1/7748
SNV	Breast	CLEC5A_A124V_4	HLA-C05:01	ITDVEKYFI	0.9998	0.9167	0.101	20.17	0.1237	8.47	1/982	1/7748
SNV	Breast	ERAP2_H708R_7	HLA-C05:01	YLESFYRMM	0.9988	0.9095	0.6601	381.72	0.3693	7.75	1/982	1/7748
SNV	Breast	GRIK2_I434N_8	HLA-A02:01	SLSNRSLNV	0.9571	0.7249	0.5471	117.97	0.417	3.75	1/982	1/7748
SNV	Breast	GRIK2_I434N_4	HLA-C03:04	RSLNVTTIL	0.9938	0.9949	0.7094	151.15	0.323	3.75	1/982	1/7748
SNV	Breast	MAGEL2_A1086T_2	HLA-C03:04	HTYIIINKL	0.985	0.9528	0.5072	203.89	0.364	3.91	1/982	1/7748
SNV	Breast	NOTCH1_S2523L_8	HLA-B07:02	SPDQWSSL	0.9632	0.5511	1.0224	292.8	0.3548	65.18	1/982	1/7748
SNV	Breast	RANBP2_P1055L_9	HLA-C03:04	SSPQVVTQL	0.9962	0.9769	0.0576	467.73	0.4918	56.96	1/982	1/7748
SNV	Breast	SLC29A4_A116V_5	HLA-A02:01	YILVVLAAV	0.9628	0.6479	0.069	463.13	0.6586	14.63	1/982	1/7748
SNV	Breast	ALX4_V258M_5	HLA-B44:03	TEARMQVW	0.9996	0.9889	0.1742	390.04	0.3894	1.72	1/982	1/7748
SNV	Breast	ALX4_V258M_5	HLA-B44:03	TEARMQVWF	0.985	0.9668	0.0529	18.06	0.153	1.72	1/982	1/7748
SNV	Breast	RASGRP4_P508T_1	HLA-B07:02	TPRQGRGSF	0.9989	0.5521	0.023	1.33	0.0145	3.55	1/982	1/7748
SNV	Breast	SLC12A9_L619F_5	HLA-A03:01	RISGFGGMK	0.9987	0.7416	0.066	2.78	0.0235	27.63	1/982	1/7748
SNV	Breast	SLC12A9_L619F_6	HLA-C07:02	LRISGFGGM	0.7931	0.9692	0.2181	287.21	0.3156	27.63	1/982	1/7748
SNV	Breast	TMEM185A_H165N_8	HLA-C07:02	LRLDKIINW	0.8205	0.9419	0.7933	141.44	0.2309	6.96	1/982	1/7748
SNV	Breast	ZNF280C_H255N_8	HLA-C04:01	LLDPLKYNM	0.9998	0.8122	0.0673	163.39	0.0886	2.82	1/982	1/7748
SNV	Breast	AP4M1_R249Q_8	HLA-C15:02	RGYGPGIQV	0.999	0.9179	0.4059	8.36	0.0739	21.84	1/982	1/7748
SNV	Breast	AP4M1_R249Q_8	HLA-C03:04	RGYGPGIQV	0.7601	0.9762	1.2944	237.06	0.3846	21.84	1/982	1/7748
SNV	Breast	CA13_G146E_4	HLA-C15:02	AVLEVFLQI	0.9984	0.9774	0.362	35	0.2158	3.64	1/982	1/7748
SNV	Breast	FLAD1_R345H_7	HLA-B51:01	LAYLTAHL	0.9995	0.7221	0.4966	163.79	0.2821	78.74	1/982	1/7748
SNV	Breast	FLAD1_R345H_3	HLA-C03:04	TAHLPQGSL	0.9991	0.9943	0.1739	129.1	0.3014	78.74	1/982	1/7748
SNV	Breast	GNB5_G379R_6	HLA-C15:02	RVSPDRTAF	0.7837	0.7884	1.2334	188.98	0.5088	4.09	1/982	1/7748
SNV	Breast	GNB5_G379R_6	HLA-C03:04	RVSPDRTAF	0.8452	0.9735	0.6005	81.27	0.2529	4.09	1/982	1/7748
SNV	Breast	LIMS2_S4R_6	HLA-C15:02	MSDALANAV	0.9978	0.8933	0.0956	63.69	0.3119	10.16	3/982	3/7748
SNV	Breast	LIMS2_S4R_6	HLA-C15:02	MSDALANAV	0.9978	0.8933	0.0956	63.69	0.3119	10.16	3/982	3/7748
SNV	Breast	LIMS2_S4R_6	HLA-C15:02	MSDALANAV	0.9978	0.8933	0.0956	63.69	0.3119	10.16	3/982	3/7748
SNV	Breast	MAPK15_H542Q_7	HLA-B51:01	LPLLEGQHV	0.9955	0.5418	0.0361	5.91	0.0423	18.42	3/982	3/7748
SNV	Breast	MAPK15_H542Q_7	HLA-B51:01	LPLLEGQHV	0.9955	0.5418	0.0361	5.91	0.0423	18.42	3/982	3/7748
SNV	Breast	MAPK15_H542Q_7	HLA-B51:01	LPLLEGQHV	0.9955	0.5418	0.0361	5.91	0.0423	18.42	3/982	3/7748
SNV	Breast	CMBL_I93V_5	HLA-B44:03	GDWSVFPEW	0.8065	0.9954	0.1515	51.27	0.2297	56.86	1/982	1/7748
SNV	Breast	FUNDC2_A57V_7	HLA-B44:03	FESLDLVEF	0.9897	0.9663	0.062	376.28	0.3866	21.86	1/982	1/7748
SNV	Breast	FUNDC2_A57V_1	HLA-B44:03	VEFAKKQPW	0.9987	0.9822	0.0059	2.82	0.0566	21.86	1/982	1/7748
SNV	Breast	FUNDC2_A57V_1	HLA-B44:03	VEFAKKQPWW	0.9934	0.993	0.0674	90.5	0.276	21.86	1/982	1/7748
SNV	Breast	ITGA10_R444L_5	HLA-C07:02	LRGGLRLFL	0.9015	0.9578	0.2234	444.19	0.38	5.08	1/982	1/7748
SNV	Breast	PIK3CA_E545K_5	HLA-B44:03	SEITKQEKDF	0.9989	0.8114	0.0872	10.32	0.1253	13.29	6/982	18/7748
SNV	Breast	WDR44_R596W_4	HLA-B07:02	APFWQRPF	0.9952	0.5844	0.8046	209.98	0.3255	15.91	1/982	1/7748
SNV	Breast	WWC1_E1038K_5	HLA-C07:02	LREDKRFRL	0.8243	0.9659	0.2455	87.33	0.181	36.46	1/982	1/7748
SNV	Breast	WWC1_E1038K_1	HLA-C07:02	KRFRLLLRM	0.9834	0.8987	0.0926	88.31	0.1821	36.46	1/982	1/7748
SNV	Breast	ZNF582_E80K_11	HLA-A11:01	VVSGGLCPVLK	0.9987	0.6409	0.6181	206.94	0.4135	3.55	1/982	1/7748
SNV	Breast	APBA2_K312E_3	HLA-C05:01	RLEWPHEQV	0.9995	0.9962	0.4678	454.76	0.3914	9.6	1/982	1/7748
SNV	Breast	ATAD3B_F233L_3	HLA-A02:01	TLLGEGFRA	0.9823	0.6685	0.6069	24.68	0.2352	12.78	1/982	1/7748
SNV	Breast	EHMT1_G1235A_6	HLA-A02:01	RLIEAAEQL	0.9979	0.7816	0.2524	1.84	0.0403	12.37	1/982	1/7748
SNV	Breast	EHMT1_G1235A_6	HLA-C05:01	RLIEAAEQL	0.994	0.981	0.5179	224.29	0.3021	12.37	1/982	1/7748
SNV	Breast	GFPT2_G570D_6	HLA-A02:01	YMHSEDILA	0.9906	0.6494	0.1409	99.12	0.3904	25.9	1/982	1/7748
SNV	Breast	HSPB11_A127S_7	HLA-A02:01	SAFDHFSSV	0.9685	0.6824	0.0602	196.72	0.5042	43.86	1/982	1/7748
SNV	Breast	HSPB11_A127S_7	HLA-C05:01	SAFDHFSSV	0.9883	0.945	0.1355	427.98	0.3837	43.86	1/982	1/7748
SNV	Breast	IQCE_T169M_9	HLA-C05:01	KSDVDLMRM	0.9999	0.8418	0.1233	38.4	0.1543	9.52	1/982	1/7748
SNV	Breast	LAMA1_G2995A_6	HLA-A02:01	TLIVDANAV	0.9628	0.6906	0.6895	93.53	0.3829	6.15	1/982	1/7748
SNV	Breast	RANBP2_R2103T_4	HLA-C05:01	GSDTAWMWL	0.9994	0.9945	0.3344	230.92	0.3057	18.63	1/982	1/7748
SNV	Breast	FAM210A_V163I_9	HLA-C03:04	AALKGVNVI	0.9847	0.9857	0.2055	35.11	0.1754	16.21	1/982	1/7748
SNV	Breast	FBF1_S660L_9	HLA-B45:01	EELSARYLL	0.9652	0.8471	0.1451	83.94	0.1875	5.81	1/982	1/7748
SNV	Breast	GTSE1_P87R_4	HLA-B45:01	SESRFAWSP	0.9933	0.8903	0.0124	308.37	0.3071	10.72	1/982	1/7748
SNV	Breast	LPCAT1_V451L_6	HLA-C03:04	KTALGLAEL	0.9935	0.9926	0.222	279.98	0.4088	77.4	1/982	1/7748
SNV	Breast	MROH1_D1287G_2	HLA-C03:04	MGLEGGWEL	0.9989	0.9817	0.489	74.56	0.2439	22.82	1/982	1/7748
SNV	Breast	SLC6A6_I282F_6	HLA-C06:02	YLYPDFTRL	0.998	0.9911	0.6886	88.2	0.0926	6.78	1/982	1/7748
SNV	Breast	SLC6A6_I282F_6	HLA-C03:04	YLYPDFTRL	0.9823	0.9739	0.4733	2.42	0.0253	6.78	1/982	1/7748
SNV	Breast	TP53_R248Q_9	HLA-A11:01	SSCMGGMNQR	0.9329	0.5209	1.0263	379.16	0.5104	107.45	1/982	9/7748
SNV	Breast	ACTR3B_T164M_9	HLA-B15:01	RQVGERTLM	0.9968	0.9571	0.1963	9.74	0.0925	13.35	1/982	1/7748
SNV	Breast	ENOX1_R201Q_8	HLA-C03:03	YLSGYRMQL	0.9503	0.9737	0.5329	40.87	0.1865	1.95	1/982	1/7748
SNV	Breast	GREB1L_V350I_6	HLA-B35:03	VPVPTIRPL	0.9676	0.8677	0.0181	10.21	0.0349	3.54	1/982	1/7748
SNV	Breast	GREB1L_V350I_6	HLA-C03:03	VPVPTIRPL	0.9608	0.9829	0.7165	335.94	0.4383	3.54	1/982	1/7748
SNV	Breast	MYO10_E1824Q_3	HLA-B35:03	APQENLQVL	0.9741	0.8691	0.1036	24.17	0.0573	13.3	1/982	1/7748
SNV	Breast	MYO10_E1824Q_5	HLA-B35:03	HPAPQENLQVL	0.9957	0.7427	0.077	469.65	0.1731	13.3	1/982	1/7748
SNV	Breast	CNP_R245K_4	HLA-C16:01	FGKKPPGVL	0.8538	0.9887	0.7424	146.89	0.5053	34.78	1/982	1/7748
SNV	Breast	FADS2_H139Y_9	HLA-A29:02	VFFLLLLAY	0.9941	0.6189	0.0406	39.32	0.2543	41.18	1/982	1/7748
SNV	Breast	PIK3CA_Q546R_3	HLA-B44:03	TEREKDFLW	0.9988	0.9764	0.0365	4.49	0.0824	3.67	1/982	2/7748
SNV	Breast	PIK3CA_Q546R_6	HLA-B44:03	SEITEREKDF	0.9984	0.8363	0.1021	5.57	0.0927	3.67	1/982	2/7748
SNV	Breast	SFMBT1_S431R_2	HLA-C07:02	VRVESMDIF	0.7836	0.9576	0.2519	221.22	0.2818	4.57	1/982	1/7748
SNV	Breast	ST7_L38R_5	HLA-C16:01	LVYIRRVPL	0.8655	0.9535	1.4814	249.76	0.64	12.48	1/982	1/7748
SNV	Breast	ARID3B_A21T_5	HLA-B35:01	QPHLTPLQM	0.9493	0.8848	0.0594	11.42	0.1393	3.01	1/982	1/7748
SNV	Breast	ATP13A2_T567S_1	HLA-B35:01	SPVGDPMDL	0.8694	0.7155	0.3468	71.61	0.2763	53.88	1/982	1/7748
SNV	Breast	BMP1_A344T_7	HLA-B35:01	YPNGYSTHM	0.9988	0.8758	0.0421	1.15	0.0093	23.23	1/982	1/7748
SNV	Breast	C15orf39_R153M_1	HLA-B35:01	MPLDVDWTL	0.9912	0.9772	0.0357	1.81	0.0325	45.75	1/982	1/7748
SNV	Breast	CABIN1_C219Y_2	HLA-C04:01	KYDMSIHDV	0.9106	0.5496	0.0439	69.71	0.0639	55.89	1/982	1/7748
SNV	Breast	CRAT_L103F_5	HLA-B18:01	SEWWFKTAY	0.9972	0.9704	0.0022	1.41	0.004	36.03	1/982	1/7748
SNV	Breast	GLB1L_G597E_4	HLA-B35:01	FPREALNKI	0.9273	0.748	0.3224	356	0.4462	6.01	1/982	1/7748
SNV	Breast	GPD1_T183I_6	HLA-B18:01	KELMQIPNF	0.9703	0.9207	0.2004	58.4	0.1252	3.93	1/982	1/7748
SNV	Breast	HUWE1_L4080F_9	HLA-B35:01	EMFNPMYAF	0.9629	0.8869	0.451	100.23	0.3076	109.96	1/982	1/7748
SNV	Breast	HUWE1_L4080F_10	HLA-B18:01	REMFNPMYAF	0.9324	0.9275	0.3558	190.96	0.1959	109.96	1/982	1/7748
SNV	Breast	LAMA1_C1556S_2	HLA-C05:01	SSDDECVGV	0.9997	0.7991	0.0587	213.36	0.2961	1.26	1/982	1/7748
SNV	Breast	PLCB3_A682S_5	HLA-C05:01	TLDVSMQL	1	0.9492	0.0311	85.44	0.2082	55.41	1/982	1/7748
SNV	Breast	PLCB3_A682S_6	HLA-C05:01	QTLDVSMQL	0.9921	0.9433	1.0821	492.61	0.402	55.41	1/982	1/7748
SNV	Breast	PRKDC_M1743K_5	HLA-C05:01	YVDCKKKFL	0.9991	0.9182	0.04	94.9	0.2167	158.56	1/982	1/7748
SNV	Breast	RNF213_D4984G_6	HLA-A03:01	LVYRHGWNY	0.717	0.5294	0.7064	153.21	0.3285	19.93	1/982	1/7748
SNV	Breast	TCTN2_P69L_9	HLA-B18:01	DEAGILPIL	0.978	0.9584	0.1114	6.38	0.0437	11.64	1/982	1/7748
SNV	Breast	ZSWIM5_R265H_8	HLA-C05:01	KPDQVKLHL	0.9988	0.9022	0.2311	312.02	0.3438	1.07	1/982	1/7748
SNV	Breast	ANK3_P2673L_9	HLA-C16:01	KAPSLPSSL	0.9793	0.9809	0.0668	7.33	0.0734	2.29	1/982	1/7748
SNV	Breast	ARHGAP12_E20D_4	HLA-B44:03	IEVDYDYEY	0.9879	0.7339	0.0391	2.66	0.0534	55.81	1/982	1/7748
SNV	Breast	ASTN2_E366K_4	HLA-B08:01	TPIKIGQL	0.9809	0.5285	1.5042	252.65	0.2539	8.59	1/982	1/7748
SNV	Breast	ASTN2_E366K_8	HLA-C07:01	FRANTPIKI	0.998	0.7966	0.0876	9.55	0.0177	8.59	1/982	1/7748
SNV	Breast	ATXN2_N442K_3	HLA-C16:01	RAKQLAEEI	0.7988	0.9577	0.8003	345.71	0.7338	9.75	1/982	1/7748
SNV	Breast	ATXN2_Q443P_4	HLA-C16:01	RANPLAEEI	0.9494	0.9828	0.307	16.08	0.1478	9.75	1/982	1/7748
SNV	Breast	DIS3L_P61A_1	HLA-B44:03	ADWKVVQDY	0.7862	0.7501	0.276	55.15	0.2365	22.02	1/982	1/7748
SNV	Breast	HELZ_S1488L_5	HLA-B44:03	DENPLGLPI	0.951	0.9	0.3081	352.05	0.3814	26.02	1/982	1/7748
SNV	Breast	HELZ_S1488L_7	HLA-C16:01	FIDENPLGL	0.97	0.9792	0.2191	27.39	0.1998	26.02	1/982	1/7748
SNV	Breast	HELZ_S1488L_1	HLA-C16:01	LGLPIGEAL	0.7314	0.992	0.7526	62.58	0.3295	26.02	1/982	1/7748
SNV	Breast	HPSE_M381K_5	HLA-B44:03	IEVVKRQVF	0.9428	0.5137	0.1055	105.5	0.2875	1.37	1/982	1/7748
SNV	Breast	IL4R_G602A_2	HLA-B08:01	AAYKAFSSL	0.9863	0.5591	0.184	172.84	0.2203	38.79	1/982	1/7748
SNV	Breast	IL4R_G602A_2	HLA-C16:01	AAYKAFSSL	0.995	0.9829	0.0055	1.65	0.0075	38.79	1/982	1/7748
SNV	Breast	KMT2C_T1171S_8	HLA-B44:03	KELDPPKSY	0.9995	0.9729	0.0262	1.11	0.004	42.95	1/982	1/7748
SNV	Breast	KMT2C_T1171S_8	HLA-B44:03	KELDPPKSYT	0.7967	0.9714	0.6482	94.76	0.2795	42.95	1/982	1/7748
SNV	Breast	KRT4_R420H_1	HLA-B44:03	HEYQELMSV	0.9016	0.9736	0.1675	184.66	0.3307	1.51	1/982	1/7748
SNV	Breast	KRT4_R420H_8	HLA-B44:03	EELARMLHEY	0.9995	0.9668	0.0734	6.25	0.0977	1.51	1/982	1/7748
SNV	Breast	LRRK2_G2385R_1	HLA-C16:01	RLIDCVHFL	0.9902	0.9862	0.4056	235.84	0.6233	3.46	1/982	1/7748
SNV	Breast	MYCN_F401I_9	HLA-C07:01	RRNDLRSSI	0.9977	0.5149	0.1086	33.17	0.0507	2.35	1/982	1/7748
SNV	Breast	ROR1_T69M_1	HLA-C16:01	MSLGQTAEL	0.9847	0.9782	0.0328	9.63	0.0967	1.43	1/982	1/7748
SNV	Breast	SGCE_Q243H_7	HLA-B44:03	REVENPHNQL	0.9057	0.9223	0.1984	90.74	0.2762	11.26	1/982	1/7748
SNV	Breast	SLC35E1_F246L_3	HLA-C16:01	SALLVSSDL	0.7146	0.9831	0.915	480.32	0.8309	74.94	1/982	1/7748
SNV	Breast	ST5_V902L_2	HLA-B08:01	FLADKLSTL	0.9803	0.8489	0.0115	8.37	0.0346	12.41	1/982	1/7748
SNV	Breast	ST5_V902L_2	HLA-C16:01	FLADKLSTL	0.9912	0.9841	0.1909	10.02	0.0993	12.41	1/982	1/7748
SNV	Breast	TSSC1_P102S_6	HLA-C16:01	AVWRMSKEL	0.9164	0.988	1.863	430.53	0.796	11.1	1/982	1/7748
SNV	Breast	ZNF658_E186Q_8	HLA-B44:03	HEKAHAEQKSY	0.9996	0.9504	0.126	289.93	0.3661	2.3	1/982	1/7748
SNV	Breast	ANTXR1_T377M_8	HLA-B08:01	LPKKKWPM	0.9992	0.5663	0.1208	210.82	0.2375	51.75	1/982	1/7748
SNV	Breast	ANTXR1_T377M_8	HLA-B08:01	LPKKKWPMV	0.9929	0.665	0.0583	121.27	0.1866	51.75	1/982	1/7748
SNV	Breast	C10orf128_K97T_1	HLA-C07:01	TRDAQVIEL	0.9972	0.7825	0.1285	38.1	0.0557	3.32	3/982	3/7748
SNV	Breast	C10orf128_K97T_1	HLA-C07:01	TRDAQVIEL	0.9972	0.7825	0.1285	38.1	0.0557	3.32	3/982	3/7748
SNV	Breast	C10orf128_K97T_1	HLA-C07:01	TRDAQVIEL	0.9972	0.7825	0.1285	38.1	0.0557	3.32	3/982	3/7748
SNV	Breast	DISP1_E553K_8	HLA-C07:01	YRVVFHFKF	0.9991	0.5555	0.076	326.13	0.144	23.23	1/982	1/7748
SNV	Breast	EVC2_L736F_2	HLA-B08:01	DFRTLTLSL	0.8607	0.6795	0.2081	157.58	0.2123	1.25	1/982	1/7748
SNV	Breast	EVC2_L736F_1	HLA-C07:01	FRTLTLSLF	0.9988	0.7166	0.0876	229.09	0.1209	1.25	1/982	1/7748
SNV	Breast	PARS2_R44H_7	HLA-C07:01	RRLLLSHVF	0.9988	0.5392	0.044	261.82	0.1269	11.31	1/982	1/7748
SNV	Breast	SRCAP_Q3158E_4	HLA-C07:01	GRLEPPSPL	0.9947	0.829	0.0676	294.07	0.1359	49.58	1/982	1/7748
SNV	Breast	UTRN_T1646S_1	HLA-B08:01	SLMNHQNQL	0.9015	0.6835	0.0655	46.37	0.1118	38.98	1/982	1/7748
SNV	Breast	DFNB59_D60Y_1	HLA-C03:03	YILLGDREI	0.8247	0.9596	1.2734	449.73	0.4855	1.61	1/982	2/7748
SNV	Breast	DGUOK_D163E_4	HLA-A02:01	SLSEIEWHI	0.9955	0.6874	0.0288	1.51	0.0228	95.18	1/982	1/7748
SNV	Breast	DGUOK_D163E_5	HLA-A02:01	GSLSEIEWHI	0.8571	0.6688	1.611	308.08	0.5769	95.18	1/982	1/7748
SNV	Breast	DYRK2_L438F_1	HLA-C03:03	FGMPSQKLL	0.9995	0.9908	0.2194	18.69	0.1325	2.86	1/982	1/7748
SNV	Breast	FAM219A_I141T_6	HLA-B39:01	NQDLNTQLL	0.8507	0.9553	0.1198	37.21	0.1075	12.37	1/982	1/7748
SNV	Breast	KIF7_A1051T_8	HLA-A02:01	QLDEAIETL	0.9879	0.6389	0.4074	2.14	0.0485	7.44	1/982	1/7748
SNV	Breast	KIF7_A1051T_9	HLA-A02:01	FQLDEAIETL	0.9904	0.717	0.5089	2	0.045	7.44	1/982	1/7748
SNV	Breast	KIF7_A1051T_9	HLA-B39:01	FQLDEAIETL	0.9828	0.9861	0.2522	400.84	0.2876	7.44	1/982	1/7748
SNV	Breast	NDST1_I508F_1	HLA-A02:01	FINGGELFL	0.9897	0.5071	0.2542	5.21	0.1072	14.96	1/982	1/7748
SNV	Breast	NDST1_I508F_2	HLA-C07:02	KFINGGELF	0.6913	0.9604	0.1399	68.48	0.1601	14.96	1/982	1/7748
SNV	Breast	NDST1_I508F_1	HLA-C03:03	FINGGELFL	0.9976	0.9896	0.1315	74.86	0.2443	14.96	1/982	1/7748
SNV	Breast	PLXNA2_I1242V_9	HLA-A02:01	LTLPAIVSV	0.984	0.5381	0.2276	84.04	0.3692	1.95	1/982	1/7748
SNV	Breast	PLXNA2_I1242V_11	HLA-A02:01	SLLTLPAIVSV	0.997	0.7041	0.7489	32.42	0.2596	1.95	1/982	1/7748
SNV	Breast	PLXNA2_I1242V_9	HLA-C03:03	LTLPAIVSV	0.9806	0.9888	0.3064	108.78	0.2832	1.95	1/982	1/7748
SNV	Breast	PLXNA2_I1242V_3	HLA-C03:03	VSVAAGGSL	0.998	0.9938	0.1264	66.79	0.2323	1.95	1/982	1/7748
SNV	Breast	PLXNA2_I1242V_2	HLA-C03:03	SVAAGGSLL	0.9941	0.9959	0.1038	32.3	0.1703	1.95	1/982	1/7748
SNV	Breast	PLXNA2_I1242V_1	HLA-C03:03	VAAGGSLLL	0.9996	0.9893	0.0153	2.58	0.0272	1.95	1/982	1/7748
SNV	Breast	PTPRG_C26G_4	HLA-C03:03	YVVGFPAL	0.9999	0.9932	1.4873	362.39	0.4505	1.02	1/982	1/7748
SNV	Breast	RBPMS2_Y176F_3	HLA-C03:03	FTFPTATAA	0.9692	0.9945	0.3257	74.66	0.244	10.55	1/982	1/7748
SNV	Breast	TONSL_E105Q_8	HLA-C03:03	HSLRNHTQL	0.9941	0.9948	0.2959	458.79	0.4887	3.06	1/982	1/7748
SNV	Breast	ATP1A1_C518Y_5	HLA-C05:01	ILDRYSSIL	0.9998	0.8463	0.04	3.32	0.0426	367.67	1/982	1/7748
SNV	Breast	ATP1A1_C518Y_5	HLA-C05:01	ILDRYSSILL	0.9999	0.8664	0.3942	120.84	0.2363	367.67	1/982	1/7748
SNV	Breast	CETP_A311V_9	HLA-A02:01	SLMGDEFKV	0.9983	0.814	0.0225	1.17	0.0108	1.47	1/982	1/7748
SNV	Breast	CETP_A311V_9	HLA-A02:01	SLMGDEFKVV	0.9954	0.8266	0.3516	7.74	0.1376	1.47	1/982	1/7748
SNV	Breast	CETP_A311V_11	HLA-A02:01	MLSLMGDEFKV	0.9869	0.6646	0.9689	443.62	0.6491	1.47	1/982	1/7748
SNV	Breast	CETP_A311V_9	HLA-A02:01	SLMGDEFKVVL	0.9947	0.6975	0.7719	145.02	0.4523	1.47	1/982	1/7748
SNV	Breast	CETP_A311V_7	HLA-C05:01	MGDEFKVVL	1	0.9405	0.038	5.02	0.057	1.47	1/982	1/7748
SNV	Breast	CETP_A311V_7	HLA-C03:03	MGDEFKVVL	0.999	0.9922	0.2013	96.98	0.2713	1.47	1/982	1/7748
SNV	Breast	CSAD_D206H_7	HLA-A02:01	FLGLGTHSV	0.9942	0.7699	0.0126	1.45	0.019	19.46	1/982	1/7748
SNV	Breast	CSAD_D206H_5	HLA-A02:01	GLGTHSVRV	0.9739	0.7019	0.496	33.81	0.2636	19.46	1/982	1/7748
SNV	Breast	CSAD_D206H_7	HLA-C05:01	FLGLGTHSV	0.9924	0.9949	0.5945	71.31	0.1944	19.46	1/982	1/7748
SNV	Breast	HNRNPUL1_G766A_4	HLA-B15:01	NQGAYSQGY	0.9864	0.6849	0.3036	94.41	0.2812	163.01	1/982	1/7748
SNV	Breast	HNRNPUL1_G766A_9	HLA-B15:01	SQPPYNQGAY	0.9997	0.835	0.2722	13.43	0.1144	163.01	1/982	1/7748
SNV	Breast	LMBRD1_S229N_7	HLA-B15:01	LIKGTRNAAY	0.9999	0.8269	0.3871	307.82	0.436	49.05	1/982	1/7748
SNV	Breast	STIM1_R424W_8	HLA-B44:02	SEVTAALW	0.9997	0.5134	0.1214	4.34	0.0704	67.31	1/982	2/7748
SNV	Breast	TIPARP_S148I_9	HLA-C03:03	HSFPSETLI	0.9897	0.9942	0.1417	74.82	0.2443	11.02	1/982	1/7748
SNV	Breast	ZBTB18_D320Y_8	HLA-A02:01	HLAPLREYSV	0.9944	0.5722	0.8226	407.96	0.6306	78.14	1/982	1/7748
SNV	Breast	ZBTB18_D320Y_8	HLA-B15:01	HLAPLREY	0.9998	0.9027	1.4232	231.19	0.3903	78.14	1/982	1/7748
SNV	Breast	ZC2HC1C_A201T_6	HLA-B15:01	TQAEKTVANF	0.9999	0.9081	0.3957	20.69	0.1436	3.73	1/982	1/7748
SNV	Breast	ARHGAP35_P1334L_2	HLA-A02:01	VLYNMQIDLV	0.9966	0.5422	0.4173	435.45	0.645	164.68	1/982	1/7748
SNV	Breast	ARHGAP35_P1334L_10	HLA-C05:01	FSELPDPLVL	1	0.949	0.1381	271.46	0.3262	164.68	1/982	1/7748
SNV	Breast	NAA10_A94D_6	HLA-A02:01	KLMDQDSRA	0.9918	0.6292	0.4173	78.95	0.3611	23.53	1/982	1/7748
SNV	Breast	NAA10_A94D_5	HLA-C05:01	LMDQDSRAM	0.9999	0.9715	0.0291	20.17	0.1237	23.53	1/982	1/7748
SNV	Breast	PRPF39_V496A_3	HLA-C03:04	YAAKLARHL	0.9997	0.9783	0.0055	3.1	0.0325	37.68	1/982	1/7748
SNV	Breast	PRPF3_I257T_1	HLA-A02:01	TLDEQGRTV	0.9665	0.7608	0.6406	45.63	0.2929	58.32	1/982	1/7748
SNV	Breast	PRPF3_I257T_1	HLA-C05:01	TLDEQGRTV	0.9999	0.9887	0.0071	4.06	0.0481	58.32	1/982	1/7748
SNV	Breast	PRPF3_I257T_8	HLA-C03:04	QTKPTPLTL	0.997	0.9887	0.1027	71	0.2387	58.32	1/982	1/7748
SNV	Breast	SATB2_I628F_1	HLA-A02:01	FLQSFIHDV	0.9979	0.5941	0.0036	1.87	0.0414	1.38	1/982	1/7748
SNV	Breast	SATB2_I628F_6	HLA-B44:02	LEALGFLQSF	0.9952	0.7332	0.1419	381.46	0.377	1.38	1/982	1/7748
SNV	Breast	SMCR8_S492R_1	HLA-A02:01	RLTVPLSPQV	0.9581	0.5315	1.413	222.83	0.5244	37.96	1/982	1/7748
SNV	Breast	TTL_E324G_6	HLA-A02:01	FMVDEGLKV	0.999	0.5941	0.0109	1.35	0.0155	6.84	1/982	1/7748
SNV	Breast	TTL_E324G_1	HLA-A02:01	GLKVWLIEV	0.9763	0.6779	0.3887	249.59	0.5428	6.84	1/982	1/7748
SNV	Breast	TTL_E324G_5	HLA-C05:01	MVDEGLKV	1	0.9531	0.0587	89.94	0.2123	6.84	1/982	1/7748
SNV	Breast	TTL_E324G_6	HLA-C05:01	FMVDEGLKV	0.997	0.963	0.1683	46.09	0.1654	6.84	1/982	1/7748
SNV	Breast	TTL_E324G_5	HLA-C05:01	MVDEGLKVWL	0.9998	0.9028	0.0545	145.04	0.2517	6.84	1/982	1/7748
SNV	Breast	TTL_E324G_6	HLA-C03:04	FMVDEGLKV	0.6341	0.9928	0.2016	244.93	0.3891	6.84	1/982	1/7748
SNV	Breast	ADAMTS12_P1212S_8	HLA-C07:01	SRESWWPSF	0.9832	0.75	0.082	228.83	0.1209	4.93	1/982	1/7748
SNV	Breast	BRINP1_R534H_1	HLA-C17:01	HMDFIHMVI	0.7411	0.7191	0.1505	16.96	0.0576	2.36	1/982	1/7748
SNV	Breast	PSMD5_M311I_6	HLA-C17:01	SQDPTIIGV	0.9914	0.8193	0.3585	84.45	0.1912	41.35	1/982	1/7748
SNV	Breast	TRAM1L1_R108I_2	HLA-A30:01	KIMQFTKAK	0.9949	0.8478	0.0164	87.06	0.0416	4.63	1/982	1/7748
SNV	Breast	TRAM1L1_R108I_8	HLA-C17:01	VLDKINKIM	0.5448	0.6387	0.0485	60.53	0.1547	4.63	1/982	1/7748
SNV	Breast	AGGF1_R255Q_8	HLA-C07:01	GRYQFHSQV	0.9688	0.715	0.0786	146.56	0.1043	31.59	1/982	1/7748
SNV	Breast	GTF2IRD2_N821T_1	HLA-C07:01	TYIPKIAEL	0.7583	0.7378	0.3812	58.91	0.0709	4.14	1/982	1/7748
SNV	Breast	GTF2IRD2_N821T_1	HLA-C06:02	TYIPKIAEL	0.9092	0.9953	0.0526	64.36	0.0764	4.14	1/982	1/7748
SNV	Breast	APEX2_L150F_3	HLA-B58:02	KTFTLINVY	0.9884	0.5493	0.1295	360.13	0.0447	43.93	1/982	1/7748
SNV	Breast	BTN3A2_E61D_4	HLA-B58:02	MSADTMELKW	0.9997	0.9192	0.0231	432.02	0.0487	25.3	1/982	1/7748
SNV	Breast	C1orf186_L19V_8	HLA-B15:03	LVIAVVSVF	0.9644	0.6433	0.0752	216.51	0.7384	36.31	1/982	1/7748
SNV	Breast	CYP4F11_R149W_1	HLA-B15:03	WMLTPAFHF	0.6368	0.8457	0.0563	289.06	0.8082	1.24	1/982	1/7748
SNV	Breast	DOCK5_M120I_6	HLA-B15:03	RQLQQITY	0.7724	0.7704	0.7288	2.58	0.0387	3.99	1/982	1/7748
SNV	Breast	DOCK5_M120I_7	HLA-B15:03	FRQLQQITY	0.691	0.7912	0.2499	8.92	0.1547	3.99	1/982	1/7748
SNV	Breast	DOCK5_M120I_6	HLA-B15:03	RQLQQITYSL	0.8698	0.7181	1.0501	469.06	0.9308	3.99	1/982	1/7748
SNV	Breast	EYA3_L203V_4	HLA-B15:03	YTIVGQNQY	0.8042	0.8633	0.4666	75.44	0.4923	24.16	1/982	1/7748
SNV	Breast	FAM127B_R21H_1	HLA-B15:03	HRWRNPIPF	0.5679	0.8468	0.4439	14.49	0.2105	237.93	1/982	1/7748
SNV	Breast	GOLGA5_K268N_8	HLA-B58:02	KARARVENW	0.9962	0.9686	0.0771	33.8	0.0098	51.35	1/982	1/7748
SNV	Breast	HEG1_V648F_9	HLA-B15:03	INMPNTSVF	0.988	0.7543	0.0473	4.42	0.0842	12.89	1/982	1/7748
SNV	Breast	KLF7_A295G_7	HLA-C06:02	SRSDHLGLHM	0.9587	0.9879	0.0735	433.97	0.1932	9.19	1/982	1/7748
SNV	Breast	KLF7_A295G_8	HLA-C02:10	FSRSDHLGL	0.7957	0.9795	0.272	475.71	0.4569	9.19	1/982	1/7748
SNV	Breast	KMT2C_C134Y_7	HLA-B15:03	KISEQLYAF	0.9902	0.7633	0.091	247.02	0.7702	6.49	1/982	1/7748
SNV	Breast	KMT2C_C134Y_8	HLA-B15:03	AKISEQLYAF	0.9673	0.7896	1.1904	29.18	0.322	6.49	1/982	1/7748
SNV	Breast	KMT2C_C134Y_7	HLA-C02:10	KISEQLYAF	0.619	0.9703	0.2175	229.14	0.2882	6.49	1/982	1/7748
SNV	Breast	LMO4_H149Y_5	HLA-C02:10	LINGYLNSL	0.6885	0.9628	0.4226	409.71	0.414	153.11	1/982	1/7748
SNV	Breast	NOTCH3_D1905H_4	HLA-B15:03	RMAHGSTAL	0.8801	0.8118	0.2323	40.4	0.3824	152.12	1/982	1/7748
SNV	Breast	NOTCH3_D1905H_4	HLA-C02:10	RMAHGSTAL	0.9605	0.9774	0.774	210.13	0.2741	152.12	1/982	1/7748
SNV	Breast	NOTCH3_D1905H_3	HLA-C02:10	MAHGSTALI	0.9143	0.984	0.0551	351.4	0.3773	152.12	1/982	1/7748
SNV	Breast	PLEKHG2_L969I_6	HLA-B15:03	LQVPAITTF	0.9338	0.9697	0.0003	1.09	0.0026	7.82	1/982	1/7748
SNV	Breast	PLEKHG2_L969I_7	HLA-B15:03	HLQVPAITTF	0.9782	0.9564	0.5036	1.95	0.0259	7.82	1/982	1/7748
SNV	Breast	PLEKHG2_L969I_6	HLA-C02:10	LQVPAITTF	0.6929	0.9895	0.244	84.72	0.1435	7.82	1/982	1/7748
SNV	Breast	PM20D2_E193G_6	HLA-B15:03	AHPSQGNAAY	0.8642	0.7603	1.3442	154.21	0.6522	21.47	1/982	1/7748
SNV	Breast	SLC39A6_E683Q_5	HLA-B15:03	GHYAQNVSM	0.785	0.7877	1.3008	31.15	0.3342	82.48	1/982	1/7748
SNV	Breast	SLC39A6_E683Q_2	HLA-B15:03	AQNVSMWIF	0.7388	0.7442	0.031	29.69	0.3252	82.48	1/982	1/7748
SNV	Breast	SQSTM1_K165R_1	HLA-A03:01	RLAFPSPFGH	0.9574	0.7895	1.1584	160.5	0.3345	89.93	1/982	1/7748
SNV	Breast	SQSTM1_K165R_2	HLA-B15:03	TRLAFPSPF	0.6652	0.8726	0.4482	48.31	0.4147	89.93	1/982	1/7748
SNV	Breast	USP6NL_Y685H_1	HLA-C02:10	HSRPSPLVL	0.9827	0.983	0.1806	122.9	0.1875	8.64	1/982	1/7748
SNV	Breast	ADNP_M347I_7	HLA-C03:03	YSVGQSIRL	0.9999	0.9808	0.0696	7.09	0.0637	95.56	1/982	1/7748
SNV	Breast	ATP11A_L703R_2	HLA-C07:02	KRFRRNTQL	0.9721	0.9467	0.0447	16.7	0.0702	9.8	1/982	1/7748
SNV	Breast	C6orf223_S173P_8	HLA-C07:02	LRLPRREPL	0.8876	0.9808	0.1256	249.46	0.2959	7.69	1/982	1/7748
SNV	Breast	C6orf223_S173P_4	HLA-C07:02	RREPLLRGL	0.8241	0.9626	0.1575	140.4	0.2301	7.69	1/982	1/7748
SNV	Breast	C6orf62_E51K_4	HLA-A02:01	ALFKVSEVI	0.9822	0.5021	0.4323	268.68	0.5548	296.97	1/982	1/7748
SNV	Breast	C6orf62_E51K_1	HLA-B15:01	KVSEVIPVM	0.9972	0.9817	0.404	394.89	0.4783	296.97	1/982	1/7748
SNV	Breast	C6orf62_E51K_1	HLA-C03:03	KVSEVIPVM	0.9977	0.9957	0.1138	9.89	0.0817	296.97	1/982	1/7748
SNV	Breast	CC2D1A_E588K_6	HLA-C07:02	IRQQHKMCL	0.8849	0.8432	0.2181	138.29	0.2285	35.3	1/982	1/7748
SNV	Breast	CHEK1_E432K_4	HLA-A02:01	NLLKMDDKILV	0.9318	0.5207	1.1395	439.9	0.6472	8.75	1/982	2/7748
SNV	Breast	DNAH11_E3595K_1	HLA-A02:01	KLQAQTTLL	0.9496	0.765	0.2414	92.3	0.3812	1.21	1/982	1/7748
SNV	Breast	EPC1_N82S_1	HLA-B15:01	SIAYYESIY	0.9951	0.8528	0.7204	360.43	0.4628	6.08	1/982	1/7748
SNV	Breast	EPC2_S494F_6	HLA-B15:01	QTIDFFSNF	0.9949	0.9631	0.2165	103.36	0.2895	22.4	1/982	1/7748
SNV	Breast	EPC2_S494F_7	HLA-B15:01	SQTIDFFSNF	0.9995	0.8714	1.3202	139.9	0.3247	22.4	1/982	1/7748
SNV	Breast	GOLGB1_S361F_9	HLA-B15:01	GQAQAELEF	0.9995	0.9123	0.1419	5.66	0.0559	151.45	1/982	1/7748
SNV	Breast	GOLGB1_S361F_7	HLA-B15:01	AQAELEFRY	0.9998	0.8302	0.1883	4.15	0.042	151.45	1/982	1/7748
SNV	Breast	GPR85_R269I_1	HLA-C07:02	IRLLVLDEF	0.9045	0.9287	0.2351	291.29	0.3177	1.41	1/982	1/7748
SNV	Breast	HOOK1_D421H_7	HLA-A02:01	RLIEQRHTL	0.9936	0.8009	0.2542	3.92	0.0805	11.35	1/982	1/7748
SNV	Breast	HOOK1_D421H_7	HLA-B15:01	RLIEQRHTL	0.9926	0.9309	0.4261	126.74	0.3118	11.35	1/982	1/7748
SNV	Breast	HOOK1_D421H_7	HLA-C07:02	RLIEQRHTL	0.9346	0.9695	0.2865	118.73	0.2121	11.35	1/982	1/7748
SNV	Breast	HOOK1_D421H_7	HLA-C03:03	RLIEQRHTL	0.9881	0.9895	0.6241	32.84	0.1713	11.35	1/982	1/7748
SNV	Breast	IL17RA_E130Q_4	HLA-C07:02	VRFQFLSKL	0.8588	0.9019	0.0059	7.59	0.0359	12.61	1/982	1/7748
SNV	Breast	KMT2E_R1493Q_2	HLA-B15:01	QQEPQRNFY	0.9917	0.9314	0.4726	170.64	0.3506	31.24	1/982	1/7748
SNV	Breast	LARS_M311I_5	HLA-C07:02	VRPDIKYIGF	0.9974	0.792	0.1528	465.1	0.3867	76.64	1/982	1/7748
SNV	Breast	LZTS1_E379Q_4	HLA-A02:01	ALEQTQWEV	0.9844	0.7532	0.5258	26.41	0.2409	6.3	1/982	1/7748
SNV	Breast	MAML1_S864P_5	HLA-C03:03	FTAAPSFHM	0.9986	0.9903	0.0616	32.99	0.1716	25.92	1/982	1/7748
SNV	Breast	NBEA_A953V_5	HLA-B15:01	VTYEVHKEY	0.9949	0.9532	0.352	5.14	0.0524	2.4	1/982	1/7748
SNV	Breast	NTAN1_G45D_7	HLA-B15:01	QQVGPQDLLY	0.9996	0.7916	0.3175	24.79	0.1568	24.69	1/982	1/7748
SNV	Breast	PRDM15_I1345F_2	HLA-C07:02	SFQQVVVTL	0.6094	0.9567	0.0826	60.4	0.1498	3.22	1/982	1/7748
SNV	Breast	PRDM15_I1345F_6	HLA-C03:03	SAVQSFQQV	0.9849	0.9694	0.0736	105.23	0.2798	3.22	1/982	1/7748
SNV	Breast	RLF_S755L_5	HLA-C07:02	ARFGLVNEL	0.8672	0.9574	0.0099	5.07	0.0191	23.91	1/982	1/7748
SNV	Breast	RLF_S755L_6	HLA-C03:03	YARFGLVNEL	0.9988	0.9883	0.9225	385.97	0.4607	23.91	1/982	1/7748
SNV	Breast	ROPN1L_L208V_5	HLA-B15:01	GMIGVSDFF	0.9921	0.8866	0.2065	66.87	0.2493	1.68	1/982	1/7748
SNV	Breast	SCML1_E135K_7	HLA-B15:01	ETFSYPKSY	0.7534	0.886	0.9166	479.26	0.5122	1.75	1/982	1/7748
SNV	Breast	SCML1_E135K_3	HLA-C03:03	YPKSYSPTL	0.9932	0.9719	0.8966	181.01	0.3477	1.75	1/982	1/7748
SNV	Breast	SCML1_E135K_1	HLA-C03:03	KSYSPTLPV	0.9754	0.9805	0.3118	197.15	0.3594	1.75	1/982	1/7748
SNV	Breast	SENP5_S451R_2	HLA-C07:02	QRILSSELL	0.9719	0.9311	0.418	439.44	0.3784	33.77	1/982	1/7748
SNV	Breast	SLC16A6_E416K_1	HLA-B15:01	KKMSSAAGVY	0.9259	0.9485	0.5524	285.67	0.4233	7.6	1/982	1/7748
SNV	Breast	SLC35F5_E88K_5	HLA-B15:01	VASSKLTSY	0.999	0.9198	0.0781	16.53	0.1271	48.5	1/982	1/7748
SNV	Breast	SLC35F5_E88K_3	HLA-B15:01	SSKLTSYVF	0.9954	0.9124	0.423	419.34	0.4885	48.5	1/982	1/7748
SNV	Breast	SUFU_E437K_7	HLA-B15:01	LQILLTKEF	0.9995	0.9442	0.0979	106.26	0.2921	12.6	1/982	1/7748
SNV	Breast	TP53_L194R_8	HLA-A02:01	GLAPPQHRI	0.982	0.7542	0.6863	19.25	0.2142	131.2	3/982	8/7748
SNV	Breast	ZGRF1_L1623V_10	HLA-A02:01	KLNKDQATAV	0.9432	0.7898	0.947	485.62	0.669	1.83	1/982	1/7748
SNV	Breast	ZGRF1_L1623V_3	HLA-C03:03	TAVIQIAQM	0.9993	0.9882	0.099	155.88	0.3272	1.83	1/982	1/7748
SNV	Breast	ZKSCAN7_L678F_9	HLA-B15:01	KVFSYSSSF	0.9978	0.7544	0.005	3.43	0.0333	3.36	1/982	1/7748
SNV	Breast	ZKSCAN7_L678F_9	HLA-C07:02	KVFSYSSSF	0.954	0.7526	1.9695	302.37	0.3232	3.36	1/982	1/7748
SNV	Breast	ZKSCAN7_L678F_9	HLA-C03:03	KVFSYSSSF	0.8616	0.9752	0.5547	84.71	0.2572	3.36	1/982	1/7748
SNV	Breast	ZKSCAN7_L678F_7	HLA-C03:03	FSYSSSFMV	0.9226	0.9885	0.3896	429.44	0.478	3.36	1/982	1/7748
SNV	Breast	ZMYM4_S1199L_1	HLA-B15:01	LVSGMTLKY	0.9968	0.7384	0.169	115.44	0.2997	38.1	1/982	1/7748
SNV	Breast	ZNF341_P160S_3	HLA-B07:02	GPSPVQSSL	0.9995	0.5143	0.0222	1.25	0.011	3.44	1/982	1/7748
SNV	Breast	ZNF341_P160S_1	HLA-B07:02	SPVQSSLNM	0.9953	0.5397	0.136	4.09	0.066	3.44	1/982	1/7748
SNV	Breast	ZNF341_P160S_8	HLA-B07:02	QPMPQGPSPV	0.9879	0.582	0.1179	113.77	0.2741	3.44	1/982	1/7748
SNV	Breast	ZNF341_P160S_4	HLA-B07:02	QGPSPVQSSL	0.8731	0.5172	1.6699	10.59	0.1204	3.44	1/982	1/7748
SNV	Breast	ZNF341_P160S_3	HLA-B07:02	GPSPVQSSLNM	0.9995	0.5433	0.2299	414.8	0.3855	3.44	1/982	1/7748
SNV	Breast	ZNF552_E152K_8	HLA-B07:02	KPYRGSVKEAL	1	0.5108	0.1772	14.12	0.1373	51.63	1/982	1/7748
SNV	Breast	ZNF552_E152K_6	HLA-C07:02	YRGSVKEAL	0.8526	0.9168	0.0969	37.31	0.1116	51.63	1/982	1/7748
SNV	Breast	CDA_D141Y_9	HLA-B35:01	LPSSFGPEY	0.9982	0.7965	0.0015	1.1	0.0064	5.29	1/982	1/7748
SNV	Breast	CDA_D141Y_10	HLA-B35:01	LLPSSFGPEY	0.9055	0.8333	1.5368	10.58	0.1331	5.29	1/982	1/7748
SNV	Breast	COPS6_M230T_8	HLA-B15:03	AQHSAIKTL	0.8379	0.6112	0.0527	2.61	0.0392	140.55	1/982	1/7748
SNV	Breast	DNAH1_L1005S_1	HLA-B35:01	SPITNYDKL	0.9423	0.7761	0.5556	393.07	0.4587	2.05	1/982	1/7748
SNV	Breast	DNAH1_L1005S_5	HLA-B15:03	RIFSSPITNY	0.9455	0.625	0.7097	142.68	0.6316	2.05	1/982	1/7748
SNV	Breast	MAPK8IP3_D336Y_9	HLA-B35:01	VSIGMGSSY	0.9659	0.8201	0.0984	131.75	0.3357	11.13	1/982	1/7748
SNV	Breast	MAPK8IP3_D336Y_9	HLA-B15:03	VSIGMGSSY	0.9501	0.6064	0.1489	15.48	0.2208	11.13	1/982	1/7748
SNV	Breast	RBM23_S425A_1	HLA-B15:03	AQCFQLSSLF	0.9439	0.6897	0.5914	50.18	0.4213	25.42	1/982	1/7748
SNV	Breast	SAMD9_T744S_7	HLA-B35:01	HPGCGGSTL	0.9467	0.9413	0.218	220.32	0.3884	40.85	1/982	1/7748
SNV	Breast	STK25_G100S_6	HLA-B15:03	MEYLGSGSAL	0.946	0.6308	0.7544	419.96	0.9003	38.71	1/982	1/7748
SNV	Breast	UNC13B_P488A_5	HLA-B35:01	TATTATYCY	0.9829	0.8559	0.1404	32.24	0.2094	31.04	1/982	1/7748
SNV	Breast	ADAMTSL4_S130Y_8	HLA-B07:02	GPLRGPAYHL	0.9987	0.6428	0.1914	21.13	0.1582	1.05	1/982	1/7748
SNV	Breast	ADAMTSL4_S130Y_11	HLA-B27:05	GRGGPLRGPAY	0.9998	0.6672	0.1191	220.75	0.4955	1.05	1/982	1/7748
SNV	Breast	PDIA3_S165G_3	HLA-C07:02	SFGEAHSEF	0.862	0.9886	0.172	150.69	0.2378	532.29	1/982	1/7748
SNV	Breast	PRPF6_L318M_3	HLA-B27:05	ARMEEVTGK	0.9985	0.7835	0.0855	2.38	0.076	81.74	1/982	1/7748
SNV	Breast	PRPF6_L318M_3	HLA-B27:05	ARMEEVTGKL	0.9998	0.7194	0.0346	3.95	0.1239	81.74	1/982	1/7748
SNV	Breast	SMCR8_I512L_2	HLA-A02:01	TLSEDSIEV	0.9973	0.7181	0.1881	1.91	0.0423	3.58	1/982	1/7748
SNV	Breast	SMCR8_I512L_3	HLA-A02:01	RTLSEDSIEV	0.991	0.6856	1.5467	44.15	0.2897	3.58	1/982	1/7748
SNV	Breast	TAF1_R1225Q_1	HLA-B27:05	QRIQEQLRR	0.9995	0.5368	0.2829	29.5	0.2813	4.49	1/982	1/7748
SNV	Breast	TAF1_R1225Q_1	HLA-B27:05	QRIQEQLRRL	1	0.6965	0.1824	102.94	0.4107	4.49	1/982	1/7748
SNV	Breast	ACCS_L396F_6	HLA-C02:10	YVSEEFRAL	0.9192	0.9498	0.0551	25.63	0.058	4.42	1/982	1/7748
SNV	Breast	ALDH1L1_L66F_10	HLA-B15:03	SRWRAKGQAF	0.9396	0.7201	1.9076	48.39	0.415	1.19	1/982	1/7748
SNV	Breast	ALDH1L1_L66F_3	HLA-B15:03	QAFPDVVAKY	0.986	0.8954	0.8738	185.68	0.7014	1.19	1/982	1/7748
SNV	Breast	ALDH1L1_L66F_4	HLA-B15:03	GQAFPDVVAKY	0.95	0.8464	1.0144	450.38	0.9196	1.19	1/982	1/7748
SNV	Breast	ALDH1L1_L66F_3	HLA-B58:01	QAFPDVVAKY	0.9299	0.9725	0.4259	153.76	0.4537	1.19	1/982	1/7748
SNV	Breast	APP_N42H_8	HLA-B15:03	AMFCGRLHM	0.8565	0.8574	0.1229	210.49	0.7317	1375.16	1/982	1/7748
SNV	Breast	BMPR2_A235V_4	HLA-B15:03	FSFVNRQNF	0.985	0.8229	0.0614	183.32	0.6982	29.39	1/982	1/7748
SNV	Breast	BMPR2_A235V_4	HLA-B58:01	FSFVNRQNF	0.9782	0.7188	0.0998	94.35	0.3851	29.39	1/982	1/7748
SNV	Breast	BNIP3L_L134F_3	HLA-B58:01	EAFKKSADW	0.9415	0.8848	0.1721	121.84	0.4204	54.39	1/982	1/7748
SNV	Breast	C19orf43_D148N_6	HLA-B58:01	LTSKGNAW	0.9929	0.9523	0.3246	146.29	0.4466	311.16	1/982	1/7748
SNV	Breast	C19orf43_D148N_7	HLA-B58:01	VLTSKGNAW	0.859	0.9498	0.4018	286.85	0.5521	311.16	1/982	1/7748
SNV	Breast	CDH19_V458L_9	HLA-C02:10	QISSIPLYL	0.7451	0.9713	0.4148	184.42	0.2529	18.48	1/982	1/7748
SNV	Breast	CDH19_V458L_7	HLA-C02:10	SSIPLYLQV	0.6194	0.9428	0.1806	253.55	0.3063	18.48	1/982	1/7748
SNV	Breast	CENPF_R2196K_4	HLA-B15:03	EMAKSLKVF	0.5524	0.5429	0.341	139.5	0.6256	56.78	1/982	1/7748
SNV	Breast	CFH_D772N_4	HLA-B15:03	KEFNHNSNIRY	0.9392	0.5143	0.8679	154.73	0.6531	6.32	1/982	1/7748
SNV	Breast	CRTC2_R145T_5	HLA-B58:01	SSWRTTMAW	0.999	0.988	0.0009	1.76	0.0251	112.32	1/982	1/7748
SNV	Breast	CRTC2_R145T_6	HLA-B58:01	ESSWRTTMAW	0.9937	0.9658	0.2773	461.24	0.6439	112.32	1/982	1/7748
SNV	Breast	DAPK1_P832R_1	HLA-B15:03	RTSIHVVVF	0.9826	0.6837	0.1381	32.29	0.3408	27.98	1/982	1/7748
SNV	Breast	DAPK1_P832R_1	HLA-B58:01	RTSIHVVVF	0.9964	0.7613	0.0334	5.32	0.093	27.98	1/982	1/7748
SNV	Breast	DAPK1_P832R_6	HLA-C02:10	FAANDRTSI	0.9824	0.9815	0.2597	102.21	0.1614	27.98	1/982	1/7748
SNV	Breast	DAPK1_P832R_1	HLA-C02:10	RTSIHVVVF	0.6851	0.9491	0.0981	80.88	0.1405	27.98	1/982	1/7748
SNV	Breast	DPH7_W354C_7	HLA-B15:03	LQRAPSCSF	0.9343	0.7794	0.0105	1.55	0.014	9.27	1/982	1/7748
SNV	Breast	DPH7_W354C_8	HLA-B15:03	SLQRAPSCSF	0.8995	0.8633	1.352	34.8	0.3547	9.27	1/982	1/7748
SNV	Breast	ENTPD6_R281Q_2	HLA-B15:03	LQMFNRTY	0.9332	0.8767	0.7097	13.21	0.1961	79.77	1/982	1/7748
SNV	Breast	ERCC5_D142H_8	HLA-B15:03	TQVRRENHLY	0.8584	0.6064	0.8219	321.45	0.8344	10.41	1/982	1/7748
SNV	Breast	LCP1_M611L_7	HLA-B15:03	VEVNPKLVM	0.5395	0.7786	0.8679	13.68	0.2016	159.2	1/982	1/7748
SNV	Breast	LRIF1_D567H_6	HLA-B15:03	LHLKSHAEF	0.6336	0.7017	0.9019	162.63	0.6664	20.24	1/982	1/7748
SNV	Breast	LRIF1_D567H_3	HLA-B58:01	KSHAEFKKIF	0.9943	0.8283	1.5503	469.19	0.6477	20.24	1/982	1/7748
SNV	Breast	SEC14L5_P15S_6	HLA-B58:01	RVYKYSFEL	0.9858	0.9695	0.9086	468.2	0.6472	2.24	1/982	1/7748
SNV	Breast	SEC14L5_P15S_6	HLA-C02:10	RVYKYSFEL	0.9589	0.9796	0.6029	28.63	0.0644	2.24	1/982	1/7748
SNV	Breast	SEC14L5_P15S_2	HLA-C02:10	YSFELVMAA	0.6771	0.9687	0.9815	235.85	0.2929	2.24	1/982	1/7748
SNV	Breast	SLC2A3_K356R_1	HLA-B15:03	RDNYNGMSF	0.5805	0.8831	0.6066	9.65	0.1609	9.15	1/982	1/7748
SNV	Breast	SLC2A3_K356R_2	HLA-B15:03	LRDNYNGMSF	0.9843	0.9068	1.931	122.07	0.5922	9.15	1/982	1/7748
SNV	Breast	TACC2_N2889I_3	HLA-B58:01	RAIAEIAQV	0.919	0.9861	0.7161	129.96	0.4296	9.04	1/982	1/7748
SNV	Breast	TACC2_N2889I_3	HLA-C02:10	RAIAEIAQV	0.9761	0.9895	0.1334	153.15	0.2228	9.04	1/982	1/7748
SNV	Breast	TGFB3_V204I_1	HLA-B58:01	ITDTVREW	0.999	0.8629	0.2908	36.72	0.2627	10.71	1/982	1/7748
SNV	Breast	TPCN2_H431Y_7	HLA-B15:03	AQFLFGYY	0.8927	0.6761	0.784	67.88	0.4739	10.59	1/982	1/7748
SNV	Breast	TPCN2_H431Y_7	HLA-B15:03	AQFLFGYYY	0.5585	0.6385	0.0316	3.46	0.0623	10.59	1/982	1/7748
SNV	Breast	TPCN2_H431Y_7	HLA-B15:03	AQFLFGYYYF	0.8566	0.5383	0.628	285.02	0.8048	10.59	1/982	1/7748
SNV	Breast	TPCN2_H431Y_9	HLA-B58:01	QSAQFLFGY	0.922	0.904	0.2416	345.92	0.5845	10.59	1/982	1/7748
SNV	Breast	TRAM1_L53H_3	HLA-B58:01	VTHQYNVTL	0.9683	0.7605	0.146	368.22	0.5954	321.3	1/982	1/7748
SNV	Breast	TRAM1_L53H_3	HLA-C02:10	VTHQYNVTL	0.6824	0.9518	0.0346	211.04	0.2748	321.3	1/982	1/7748
SNV	Breast	VPS8_Y402C_2	HLA-B58:01	YCDLINFTW	0.9753	0.8249	0.1285	54.32	0.3126	8.89	1/982	1/7748
SNV	Breast	ZFP37_E33Q_8	HLA-B15:03	KEAGRPLQM	0.6706	0.6022	0.5811	6.31	0.1222	2.34	1/982	1/7748
SNV	Breast	ZWINT_D258G_4	HLA-B15:03	MGRGPGVSF	0.9859	0.9567	0.2586	9.03	0.1557	66.12	1/982	1/7748
SNV	Breast	ZWINT_D258G_5	HLA-B15:03	TMGRGPGVSF	0.97	0.9555	0.8884	56.05	0.4406	66.12	1/982	1/7748
SNV	Breast	ACSL4_T278S_3	HLA-A31:01	MYSSGSTGR	0.9649	0.5296	0.3247	352.27	0.3734	13.61	1/982	1/7748
SNV	Breast	ANPEP_V23M_3	HLA-C03:04	AAMCTIIAL	0.9994	0.9862	0.022	13.39	0.1008	472.34	1/982	1/7748
SNV	Breast	HECTD1_L1566V_7	HLA-A31:01	ATNNMNVSR	0.9826	0.5077	0.0794	3.78	0.0153	40.5	1/982	1/7748
SNV	Breast	KLHL20_G371R_3	HLA-B15:01	AVRGHDGSSY	0.9998	0.8544	0.1529	8.53	0.0824	12.95	1/982	1/7748
SNV	Breast	KLHL20_G371R_1	HLA-C03:04	RGHDGSSYL	0.9504	0.9903	0.5399	441.5	0.4825	12.95	1/982	1/7748
SNV	Breast	MKS1_M365V_3	HLA-B15:01	LAVDKVAHF	0.9992	0.8685	0.071	47.43	0.2122	23.36	1/982	1/7748
SNV	Breast	MKS1_M365V_4	HLA-B15:01	SLAVDKVAHF	0.9997	0.8785	0.5596	354.53	0.46	23.36	1/982	1/7748
SNV	Breast	MKS1_M365V_3	HLA-C03:04	LAVDKVAHF	0.999	0.9641	0.0165	21.7	0.145	23.36	1/982	1/7748
SNV	Breast	PARP4_A1021S_5	HLA-B15:01	SQCGSGVFEY	0.9998	0.9598	0.2193	100.56	0.287	48.59	1/982	1/7748
SNV	Breast	PARP4_N720Y_1	HLA-C03:04	YLPPKAKVL	0.9486	0.9797	0.2095	149.02	0.321	48.59	1/982	1/7748
SNV	Breast	PARP4_N720Y_1	HLA-C01:02	YLPPKAKVL	0.6427	0.9579	0.0045	110.89	0.0093	48.59	1/982	1/7748
SNV	Breast	PDE1A_T452I_6	HLA-B15:01	ASKAEISSY	0.9998	0.9206	0.1375	3.05	0.0281	1.05	1/982	1/7748
SNV	Breast	PPT2_F238L_9	HLA-C03:04	VITPWQSSL	0.9991	0.9786	0.3088	206.86	0.366	11.34	1/982	2/7748
SNV	Breast	PTPRD_H1606P_3	HLA-A02:01	FIPDALLEAV	0.9965	0.6072	0.3222	205.24	0.5111	1.06	1/982	1/7748
SNV	Breast	PTPRD_H1606P_5	HLA-C03:04	YIFIPDALL	0.9966	0.984	0.2846	29.35	0.1645	1.06	1/982	1/7748
SNV	Breast	SLFN5_R376P_4	HLA-B15:01	QQKPYFPVF	0.9995	0.8219	0.0278	5.85	0.0571	6.91	1/982	1/7748
SNV	Breast	TAF2_I581M_9	HLA-C03:04	GSFNHTLQM	0.9972	0.9771	0.0752	86.17	0.259	25.23	1/982	1/7748
SNV	Breast	TARBP1_S981T_3	HLA-B15:01	SLTNTQLIF	0.9675	0.8769	0.3141	277.88	0.4186	21.74	1/982	1/7748
SNV	Breast	TARBP1_S981T_5	HLA-C03:04	ISSLTNTQL	0.9994	0.9943	0.1565	312.07	0.4263	21.74	1/982	1/7748
SNV	Breast	TRIM21_A142T_10	HLA-B40:01	QEYQEKLQVTL	0.9997	0.5328	0.136	5.84	0.1881	20.82	1/982	1/7748
SNV	Breast	TRIM21_A142T_8	HLA-C03:04	YQEKLQVTL	0.9974	0.9931	0.7675	446.59	0.4843	20.82	1/982	1/7748
SNV	Breast	AGGF1_V498I_2	HLA-A02:02	YILEHGDEV	0.9868	0.5228	0.1032	1.9	0.052	27.72	1/982	1/7748
SNV	Breast	KAT6B_E729K_5	HLA-B57:01	FGKYKIQTW	0.9972	0.9731	0.1993	44.73	0.2233	6.36	1/982	1/7748
SNV	Breast	PARP14_P48S_1	HLA-C06:02	SRSPSRFLVF	0.9791	0.9945	0.312	428.98	0.1921	100.16	1/982	1/7748
SNV	Breast	PIK3CA_E545K_3	HLA-B57:01	ITKQEKDFLW	1	0.9568	0.0602	3.56	0.0443	8.78	4/982	14/7748
SNV	Breast	RNF135_S310F_3	HLA-B57:01	LSFGKHYW	0.9998	0.9501	0.3063	6.35	0.0767	33.76	1/982	1/7748
SNV	Breast	RNF135_S310F_4	HLA-B57:01	ALSFGKHYW	0.9781	0.9706	0.1909	30.88	0.1948	33.76	1/982	1/7748
SNV	Breast	RNF135_S310F_5	HLA-B57:01	QALSFGKHYW	0.9999	0.9282	0.0432	5.79	0.0711	33.76	1/982	1/7748
SNV	Breast	RNF135_S310F_5	HLA-B53:01	QALSFGKHYW	0.9524	0.6282	0.2945	476.83	0.3213	33.76	1/982	1/7748
SNV	Breast	ABCF3_L535M_11	HLA-B40:01	GENGAGKSTMM	0.9992	0.7022	0.235	322.51	0.5913	45.22	1/982	1/7748
SNV	Breast	CERS2_P292S_2	HLA-C03:04	YSLELYPAF	0.9972	0.9884	0.1696	26.41	0.1582	342.44	1/982	1/7748
SNV	Breast	CERS2_P292S_2	HLA-C03:03	YSLELYPAF	0.9972	0.9884	0.1061	26.41	0.1582	342.44	1/982	1/7748
SNV	Breast	CHD8_D2134A_5	HLA-C03:04	FPNEAGEQM	0.9971	0.9878	0.3364	255.12	0.3947	55.98	1/982	1/7748
SNV	Breast	CHD8_D2134A_5	HLA-C03:03	FPNEAGEQM	0.9971	0.9878	0.3655	255.12	0.3947	55.98	1/982	1/7748
SNV	Breast	UTP20_S1131L_6	HLA-C03:04	MTATVLHIL	0.9994	0.9832	0.2189	173.01	0.3415	14.31	1/982	1/7748
SNV	Breast	UTP20_S1131L_6	HLA-C03:03	MTATVLHIL	0.9994	0.9832	0.1526	173.01	0.3415	14.31	1/982	1/7748
SNV	Breast	HGFAC_C521Y_1	HLA-A24:02	YLPEPGSTF	0.9753	0.5699	0.2527	3.34	0.1078	6.76	1/982	1/7748
SNV	Breast	HGFAC_C521Y_2	HLA-A24:02	IYLPEPGSTF	0.9993	0.5527	0.0466	1.09	0.0052	6.76	1/982	1/7748
SNV	Breast	HGS_R535H_8	HLA-C06:02	QRQLAIQHL	0.52	0.9855	0.0716	149.28	0.116	41.52	1/982	1/7748
SNV	Breast	MKI67_E341G_5	HLA-B51:01	FPLYGPAKM	0.9342	0.8878	0.16	36.63	0.153	31.07	1/982	1/7748
SNV	Breast	MKI67_E341G_5	HLA-B53:01	FPLYGPAKM	0.9938	0.5608	0.0362	3.55	0.0289	31.07	1/982	1/7748
SNV	Breast	GRIK4_V9L_2	HLA-A02:02	LLPAWLVMV	0.994	0.9041	0.0587	15.98	0.3374	2.63	1/982	1/7748
SNV	Breast	GRIK4_V9L_6	HLA-B53:01	APLLLLPAW	0.9729	0.8054	0.0391	40.89	0.1146	2.63	1/982	1/7748
SNV	Breast	NASP_A561V_7	HLA-B44:03	SENYVQVVEEF	0.9996	0.9357	0.1353	169.39	0.3239	44.48	1/982	1/7748
SNV	Breast	TBL1XR1_G285V_1	HLA-B57:01	VVDKTTIIW	0.9962	0.7682	0.0825	8.28	0.0957	108.61	1/982	1/7748
SNV	Breast	TBL1XR1_G285V_2	HLA-B57:01	AVVDKTTIIW	0.9999	0.8404	0.1172	56.54	0.2414	108.61	1/982	1/7748
SNV	Breast	DCAF5_H914L_9	HLA-C03:04	ATDSSRAVL	0.9987	0.9775	0.1535	365.15	0.4518	36.24	1/982	1/7748
SNV	Breast	DCAF5_H914L_4	HLA-C03:04	RAVLGHSGL	0.983	0.9958	0.4683	22.33	0.1473	36.24	1/982	1/7748
SNV	Breast	DCAF5_H914L_9	HLA-C05:01	ATDSSRAVL	0.9999	0.9799	0.022	5.52	0.0615	36.24	1/982	1/7748
SNV	Breast	EP400_H1216Y_7	HLA-C05:01	LIDSPLYNTF	1	0.8982	0.0919	387.56	0.3712	12.66	1/982	1/7748
SNV	Breast	IRF9_D53Y_9	HLA-B15:01	AGKQDFREY	0.9962	0.8553	0.7945	489.67	0.5162	5.44	1/982	1/7748
SNV	Breast	IRF9_D53Y_3	HLA-B15:01	REYQDAAFF	0.8632	0.8575	0.501	142.44	0.327	5.44	1/982	1/7748
SNV	Breast	LSM11_C183R_6	HLA-B15:01	GLRGVRTGF	0.9873	0.9371	0.259	50.25	0.2184	3	1/982	1/7748
SNV	Breast	PCED1B_F373I_1	HLA-C03:04	IMVGPQLPM	0.9921	0.9874	0.2574	209.62	0.3678	5.5	1/982	1/7748
SNV	Breast	PIK3CA_P539R_8	HLA-C03:04	KAISTRDRL	0.9888	0.9918	0.7675	254.41	0.3943	10.77	1/982	1/7748
SNV	Breast	RNF41_P32S_4	HLA-B15:01	VQASHCEHAF	0.9995	0.8857	0.1491	87.61	0.2743	47.88	1/982	1/7748
SNV	Breast	UBE2E3_P175L_2	HLA-A02:01	NLADPLVGSI	0.9392	0.5798	0.9333	45.8	0.2932	13.82	1/982	1/7748
SNV	Breast	UBE2E3_P175L_1	HLA-C03:04	LADPLVGSI	0.992	0.9876	0.0794	121.89	0.2951	13.82	1/982	1/7748
SNV	Breast	UBE2E3_P175L_1	HLA-C05:01	LADPLVGSI	0.9998	0.9748	0.0098	3.38	0.0431	13.82	1/982	1/7748
SNV	Breast	CES1_A159S_4	HLA-A02:01	ALASHENVV	0.9821	0.768	0.6755	292.63	0.5686	6.93	1/982	1/7748
SNV	Breast	CES1_A159S_2	HLA-C03:04	ASHENVVVV	0.9919	0.9955	0.1008	72.73	0.2413	6.93	1/982	1/7748
SNV	Breast	EPS8_V74F_1	HLA-A02:01	FLDRKDAMI	0.9689	0.5172	0.5649	4.43	0.095	15.58	1/982	1/7748
SNV	Breast	EPS8_V74F_1	HLA-A02:01	FLDRKDAMITV	0.9975	0.6656	0.8915	7.31	0.1329	15.58	1/982	1/7748
SNV	Breast	EPS8_V74F_2	HLA-C07:02	FFLDRKDAM	0.6262	0.969	0.3008	27.08	0.0924	15.58	1/982	1/7748
SNV	Breast	EPS8_V74F_10	HLA-C07:02	YRVEHLTTFF	0.9995	0.9002	0.028	28.72	0.0955	15.58	1/982	1/7748
SNV	Breast	KMT2C_D4425Y_1	HLA-A02:01	YLWVHLNCA	0.9849	0.5372	0.1409	499.85	0.6754	31.42	1/982	2/7748
SNV	Breast	TNNI3_K117R_1	HLA-C03:04	RVTKNITEI	0.8243	0.9883	0.7675	424.19	0.476	4.9	1/982	1/7748
SNV	Breast	ZFC3H1_N1836I_2	HLA-A02:01	SIYEFHNRV	0.9939	0.6524	0.354	3.64	0.0767	12	1/982	1/7748
SNV	Breast	CDH23_E2435K_3	HLA-B08:01	DAKSGNFAL	0.9046	0.6078	0.2052	135.89	0.1993	1.55	1/982	1/7748
SNV	Breast	CPQ_L14F_9	HLA-C16:01	FAFFGGVHF	0.9856	0.989	0.0008	7.59	0.0761	75.61	1/982	1/7748
SNV	Breast	CPQ_L14F_8	HLA-C16:01	AFFGGVHFL	0.7684	0.9931	1.4525	109.73	0.4444	75.61	1/982	1/7748
SNV	Breast	EGFR_A1201V_3	HLA-C16:01	RVVPQSSEF	0.9613	0.9772	0.0756	5.08	0.0483	34.87	1/982	1/7748
SNV	Breast	NAV2_S2033F_9	HLA-B44:03	EEMKWKEDF	0.9981	0.9532	0.0529	3.34	0.068	21.75	1/982	1/7748
SNV	Breast	NAV2_S2033F_4	HLA-B44:03	KEDFRPHLF	0.9981	0.9461	0.1881	4.14	0.0784	21.75	1/982	1/7748
SNV	Breast	PNMA2_K202N_5	HLA-B44:03	TEAENKRW	0.9998	0.9633	0.3351	170.32	0.3244	6.83	1/982	1/7748
SNV	Breast	PNMA2_K202N_5	HLA-B44:03	TEAENKRWL	0.9525	0.8518	0.3544	98.77	0.2825	6.83	1/982	1/7748
SNV	Breast	PPP1R16B_V462M_8	HLA-C16:01	MAYGNPGM	0.9886	0.9814	1.2719	354.17	0.7407	7.22	1/982	1/7748
SNV	Breast	RPS6KA2_E159K_3	HLA-B44:03	TEKDVKFYL	0.9829	0.941	0.1565	49.83	0.227	22.65	1/982	1/7748
SNV	Breast	TP53BP1_G1851R_5	HLA-B08:01	LLPARYSL	0.9996	0.7325	0.7402	170.13	0.2189	18.24	1/982	1/7748
SNV	Breast	TP53BP1_G1851R_6	HLA-B08:01	YLLPARYSL	0.995	0.7968	0.0631	38.18	0.0983	18.24	1/982	1/7748
SNV	Breast	TP53BP1_G1851R_6	HLA-C16:01	YLLPARYSL	0.9828	0.9902	0.7761	4.96	0.0467	18.24	1/982	1/7748
SNV	Breast	UBR5_S2140F_1	HLA-C16:01	FAHDLAAQL	0.9926	0.995	0.0008	3.97	0.0354	41.56	1/982	1/7748
SNV	Breast	ARVCF_D641N_7	HLA-C05:01	EMDRNFNTL	0.9999	0.9313	0.1109	130.7	0.2427	16.97	1/982	1/7748
SNV	Breast	ATP2A3_C995S_1	HLA-A02:01	SLYPGLLRT	0.9248	0.7338	0.354	3.71	0.0775	12.03	1/982	1/7748
SNV	Breast	ATP2A3_C995S_1	HLA-A02:01	SLYPGLLRTV	0.9928	0.7739	0.1588	1.9	0.042	12.03	1/982	1/7748
SNV	Breast	CHD4_I296M_7	HLA-C02:02	KVAPLKMKL	0.8702	0.9703	0.2039	35.81	0.0797	107.79	1/982	1/7748
SNV	Breast	DDX59_D495H_6	HLA-A02:01	GLLEGHYEV	0.9991	0.7687	0.0449	1.07	0.0049	19.96	1/982	1/7748
SNV	Breast	DDX59_D495H_6	HLA-A02:01	GLLEGHYEVV	0.9971	0.6787	0.6029	2.98	0.0651	19.96	1/982	1/7748
SNV	Breast	DDX59_D495H_6	HLA-A02:01	GLLEGHYEVVV	0.9969	0.664	0.947	14.4	0.1891	19.96	1/982	1/7748
SNV	Breast	DSP_T2733K_3	HLA-A02:01	YLKGGLVDPEV	0.9916	0.6585	1.5215	192.08	0.5004	478.14	1/982	1/7748
SNV	Breast	JMJD1C_D1605Y_9	HLA-C05:01	SVDSKIIVY	0.9901	0.6922	0.294	127.16	0.2405	30.48	1/982	1/7748
SNV	Breast	KLF11_P305S_4	HLA-A02:01	FLKSPPQLSV	0.9748	0.5751	0.5156	9.28	0.1527	20.27	1/982	1/7748
SNV	Breast	LTN1_L896R_4	HLA-C02:02	STFRHLSAL	0.9541	0.9469	0.0041	118.6	0.1818	9.27	1/982	1/7748
SNV	Breast	METTL4_H216Y_7	HLA-A02:01	SLNEMEYQTL	0.987	0.6998	1.2483	145.08	0.4524	3.7	1/982	1/7748
SNV	Breast	MET_Q812L_8	HLA-C05:01	SLQQLNLLL	0.9804	0.8109	0.4	381.7	0.3693	5.35	1/982	1/7748
SNV	Breast	MOK_F239I_7	HLA-C02:02	RAMNFDIPF	0.8611	0.9634	0.3093	444.11	0.4372	2.18	1/982	1/7748
SNV	Breast	PDE5A_I358T_6	HLA-C02:02	KIAATTISF	0.6231	0.95	0.1898	81.23	0.1408	4.94	1/982	1/7748
SNV	Breast	PDE5A_I358T_5	HLA-C02:02	IAATTISFM	0.8019	0.9666	0.0329	159.47	0.2294	4.94	1/982	1/7748
SNV	Breast	RAI14_N533H_7	HLA-C05:01	VTEEEIHVL	1	0.94	0.0334	9.23	0.084	30	1/982	1/7748
SNV	Breast	RGL1_E75Q_3	HLA-A02:01	TLQKLVENL	0.9743	0.6141	0.9197	187.3	0.4961	8.77	1/982	1/7748
SNV	Breast	SLC9A8_C358S_3	HLA-A02:01	FLSETCVFA	0.9966	0.6047	0.0238	25.18	0.2369	7.65	1/982	1/7748
SNV	Breast	TAF9B_G215A_3	HLA-A02:01	MIAPKNILI	0.9682	0.6285	0.5471	113.75	0.4108	48.32	1/982	1/7748
SNV	Breast	TAF9B_G215A_3	HLA-C05:01	MIAPKNILI	0.9896	0.9747	0.367	46.31	0.1657	48.32	1/982	1/7748
SNV	Breast	TAF9B_G215A_3	HLA-C02:02	MIAPKNILI	0.8733	0.9864	0.4148	150.94	0.2205	48.32	1/982	1/7748
SNV	Breast	WBSCR22_A91S_5	HLA-C05:01	MLDESVDREI	0.9998	0.9429	0.0649	310.58	0.3432	37.4	1/982	1/7748
SNV	Breast	ZFP36L1_D12N_5	HLA-C02:02	ATIFNLSEV	0.9261	0.9713	0.673	474.89	0.4564	838.69	1/982	1/7748
SNV	Breast	ZNF678_Q304H_5	HLA-C02:02	KAFTHFASL	0.9709	0.9765	0.0015	75.35	0.1358	5.17	1/982	1/7748
SNV	Breast	EDARADD_E192G_6	HLA-B14:02	HRADVGKVL	0.9925	0.7554	0.0794	56.78	0.0217	4.54	1/982	1/7748
SNV	Breast	EDARADD_E192G_6	HLA-C07:02	HRADVGKVL	0.9094	0.9506	0.122	11.64	0.0551	4.54	1/982	1/7748
SNV	Breast	EDARADD_E192G_7	HLA-C07:02	YHRADVGKVL	0.8743	0.9399	1.8958	228.31	0.2855	4.54	1/982	1/7748
SNV	Breast	GJA5_G94A_4	HLA-A24:02	VYMAHAMHTV	0.9915	0.6899	0.265	57.95	0.3819	32.89	1/982	1/7748
SNV	Breast	GJA5_G94A_1	HLA-C07:02	AHAMHTVRM	0.5946	0.9789	0.7252	395.88	0.363	32.89	1/982	1/7748
SNV	Breast	HAUS8_R7P_10	HLA-A03:01	ADSSGPGAGK	0.5136	0.5794	1.5656	231.05	0.3818	10.54	1/982	1/7748
SNV	Breast	PEAR1_N22K_9	HLA-A03:01	GLRLAGTLK	0.9944	0.8552	0.1321	14.76	0.1181	6.6	1/982	1/7748
SNV	Breast	PEAR1_N22K_10	HLA-A03:01	VGLRLAGTLK	0.9497	0.8326	1.8708	311.02	0.4261	6.6	1/982	1/7748
SNV	Breast	BMX_S638L_6	HLA-B35:01	RPHLALDTIY	0.9655	0.632	0.4562	200.64	0.3788	2.44	1/982	1/7748
SNV	Breast	BMX_S638L_9	HLA-C07:02	RLYRPHLAL	0.9519	0.9624	1.0599	250.86	0.2965	2.44	1/982	1/7748
SNV	Breast	BMX_S638L_10	HLA-C07:02	HRLYRPHLAL	0.9979	0.9502	0.4417	212.47	0.277	2.44	1/982	1/7748
SNV	Breast	BMX_S638L_2	HLA-C04:01	ALDTIYQIM	0.9997	0.8263	0.0765	369.05	0.1325	2.44	1/982	1/7748
SNV	Breast	CD3E_D187G_9	HLA-B35:01	RPPPVPNPGY	0.9322	0.8108	0.27	342.78	0.4414	8.14	1/982	1/7748
SNV	Breast	CSNK1E_R274H_6	HLA-C07:02	LRQLFHNLF	0.9279	0.9351	0.1019	125.55	0.2181	65.87	1/982	1/7748
SNV	Breast	FAM161B_D568V_1	HLA-B07:02	VPHKSLEEV	0.9924	0.6115	0.1096	435.51	0.3898	5.17	1/982	1/7748
SNV	Breast	RC3H2_V465L_9	HLA-B35:01	FPLLNKVGL	0.992	0.5127	0.1684	36.07	0.2184	31.28	1/982	1/7748
SNV	Breast	TACC2_H2651Y_9	HLA-B35:01	DALLSRLAY	0.9928	0.6142	0.0634	4.81	0.0884	6.44	1/982	1/7748
SNV	Breast	TACC2_H2651Y_1	HLA-B35:01	YPVSLCGAL	0.9917	0.655	0.0435	212.31	0.3846	6.44	1/982	1/7748
SNV	Breast	TACC2_H2651Y_1	HLA-B35:01	YPVSLCGALDY	0.9984	0.6031	0.2421	45.3	0.2366	6.44	1/982	1/7748
SNV	Breast	TACC2_H2651Y_5	HLA-C07:02	SRLAYPVSL	0.9938	0.9759	0.012	3.02	0.0093	6.44	1/982	1/7748
SNV	Breast	TTC4_R191T_6	HLA-A02:01	KLLEMTAKA	0.9934	0.5322	0.1371	8.21	0.1426	3.68	1/982	1/7748
SNV	Breast	UNC5D_P663T_4	HLA-A02:01	LLDTFACHV	0.995	0.6979	0.0645	294.39	0.5696	1.84	1/982	1/7748
SNV	Breast	WDFY4_S1021L_5	HLA-A02:01	ALAPLFVEF	0.9531	0.5628	1.2794	224	0.5253	1.42	1/982	2/7748
SNV	Breast	WDFY4_S1021L_10	HLA-B07:02	QPQRAALAPL	0.9972	0.5803	0.0338	14.11	0.1372	1.42	1/982	1/7748
SNV	Breast	WDFY4_S1021L_8	HLA-C07:02	QRAALAPLF	0.9052	0.964	0.1631	58.88	0.1475	1.42	1/982	1/7748
SNV	Breast	HIPK1_L145V_9	HLA-A02:01	QIIEEHPPV	0.9913	0.6747	0.4044	157.37	0.4663	34.5	1/982	1/7748
SNV	Breast	HIPK1_L145V_8	HLA-C02:02	IIEEHPPVM	0.8819	0.9511	0.3666	266.41	0.3171	34.5	1/982	1/7748
SNV	Breast	SWAP70_S136L_3	HLA-A02:01	IVLEEIEYL	0.9904	0.535	0.4576	3.54	0.0753	49.87	1/982	1/7748
SNV	Breast	SWAP70_S136L_2	HLA-A02:01	VLEEIEYLL	0.9971	0.7502	0.3986	2.39	0.0535	49.87	1/982	1/7748
SNV	Breast	SWAP70_S136L_3	HLA-A02:01	IVLEEIEYLL	0.9904	0.5077	1.0862	486.55	0.6694	49.87	1/982	1/7748
SNV	Breast	KCTD10_K171T_6	HLA-C07:02	NRSNNTYSY	0.7965	0.8165	0.1784	95.26	0.1895	31.56	1/982	1/7748
SNV	Breast	SF3B1_K700E_8	HLA-A02:01	GLVDEQQEV	0.9975	0.5095	0.4121	1.78	0.0385	230.37	4/982	4/7748
SNV	Breast	SUPT5H_E134K_6	HLA-C07:02	WRDQRKEEL	0.8548	0.9723	0.4095	146.08	0.2344	57.63	1/982	1/7748
SNV	Breast	SMAD9_A17T_2	HLA-B57:01	PTVKRLLGW	0.9933	0.962	0.1424	31.54	0.1964	1.01	1/982	1/7748
SNV	Breast	VPS54_N597D_4	HLA-C07:02	KLADNIQEL	0.8569	0.9831	0.7356	146.95	0.235	30.78	1/982	1/7748
SNV	Breast	BGN_R170H_6	HLA-A30:01	RIHDNHIRK	0.9975	0.8363	0.0043	7	0.007	1121.46	1/982	1/7748
SNV	Breast	HCAR2_G41R_1	HLA-C17:01	RLLGNGLAL	0.7592	0.9474	0.4286	94.65	0.2063	1.8	1/982	1/7748
SNV	Breast	HCAR2_G41R_2	HLA-C07:02	FRLLGNGLAL	0.9981	0.9232	0.2011	217.56	0.2798	1.8	1/982	1/7748
SNV	Breast	B4GALT6_K255N_4	HLA-C04:01	KLDNYMYIL	0.9995	0.6912	0.2684	452.33	0.1473	1.98	1/982	1/7748
SNV	Breast	B4GALT6_K255N_7	HLA-C03:04	FAAKLDNYM	0.999	0.9898	0.041	7.87	0.0683	1.98	1/982	1/7748
SNV	Breast	EFHC2_D409A_1	HLA-A74:01	ALKPTPHRR	0.9822	0.6951	0.2305	404.62	0.0555	2.3	1/982	1/7748
SNV	Breast	MTX2_C189W_9	HLA-B58:01	QVLEDVDQW	0.9856	0.9649	0.091	2.83	0.052	56.27	1/982	1/7748
SNV	Breast	MTX2_C189W_9	HLA-B53:01	QVLEDVDQW	0.7986	0.7009	0.1626	54.06	0.1301	56.27	1/982	1/7748
SNV	Breast	NRXN2_A778V_6	HLA-C03:04	TSRESVDTL	0.9955	0.988	0.4733	369.91	0.4539	1.49	1/982	1/7748
SNV	Breast	NRXN2_A778V_2	HLA-C03:04	SVDTLRLEL	0.9996	0.9814	0.1027	139.04	0.3115	1.49	1/982	1/7748
SNV	Breast	TP53_R248W_9	HLA-B58:01	SSCMGGMNW	0.9962	0.9486	0.0334	5.59	0.0962	253.67	2/982	3/7748
SNV	Breast	TP53_R248W_10	HLA-B58:01	NSSCMGGMNW	0.995	0.9087	0.1786	145.56	0.4459	253.67	2/982	3/7748
SNV	Breast	C19orf54_E96K_3	HLA-C07:02	GRKDVKRLL	0.7775	0.9336	0.2011	370.37	0.3531	19.61	1/982	1/7748
SNV	Breast	HERC2_A3754V_5	HLA-B07:02	VPRLVASL	0.9998	0.7357	0.2299	3.49	0.0586	10.52	1/982	1/7748
SNV	Breast	HERC2_A3754V_5	HLA-B07:02	VPRLVASLA	0.9978	0.6117	0.164	316.04	0.3616	10.52	1/982	1/7748
SNV	Breast	SPEG_P2952S_4	HLA-B07:02	SPRSEGTTL	0.9998	0.5284	0.0035	1.05	0.0024	7.3	1/982	1/7748
SNV	Breast	SPEG_P2952S_6	HLA-B07:02	RSSPRSEGTTL	0.9983	0.5471	1.0619	1.88	0.0301	7.3	1/982	1/7748
SNV	Breast	ZNF384_T443A_5	HLA-C07:02	SRAYASETY	0.7923	0.9201	0.172	238.4	0.2905	18.78	1/982	1/7748
SNV	Breast	ZNF384_T443A_3	HLA-C07:02	AYASETYLM	0.5584	0.9712	0.2294	81.53	0.1744	18.78	1/982	1/7748
SNV	Breast	DCAF5_S670F_9	HLA-C16:01	KAYKWLRYF	0.8003	0.9363	0.1031	9.07	0.0928	40.77	1/982	1/7748
SNV	Breast	GHITM_R147K_5	HLA-C16:01	IAISKTPVL	0.9964	0.9846	0.03	1.78	0.0086	200.06	1/982	1/7748
SNV	Breast	GHITM_R147K_4	HLA-C16:01	AISKTPVLM	0.9792	0.988	0.257	429.1	0.7951	200.06	1/982	1/7748
SNV	Breast	MAN1A1_M374I_3	HLA-C16:01	KVINIRTVL	0.9853	0.9774	0.6563	3.2	0.0256	13.4	1/982	1/7748
SNV	Breast	MDK_L14P_6	HLA-C16:01	LTLLAPLAL	0.8853	0.9899	0.1765	25.6	0.1934	173.71	1/982	1/7748
SNV	Breast	RECK_R587T_2	HLA-C16:01	KTKSHGTSF	0.6564	0.9742	0.0668	21.57	0.1773	4.23	1/982	1/7748
SNV	Breast	SHPRH_E1298Q_6	HLA-C16:01	AISETQRSM	0.9689	0.9891	0.5074	258.21	0.6497	1.02	1/982	1/7748
SNV	Breast	TLN1_E1438K_1	HLA-C16:01	KAAAQAAYL	0.911	0.9747	0.0756	3.92	0.0349	81.75	1/982	1/7748
SNV	Breast	TSC22D1_Q104E_1	HLA-B08:01	EMKKKSGF	0.9964	0.7245	0.4834	255.51	0.2551	78.83	1/982	1/7748
SNV	Breast	VANGL1_V515F_8	HLA-B08:01	DPKSHKFFL	0.947	0.6273	0.2028	37.22	0.0965	18.27	1/982	1/7748
SNV	Breast	VANGL1_V515F_6	HLA-C16:01	KSHKFFLRL	0.9619	0.988	0.1001	59.28	0.3185	18.27	1/982	1/7748
SNV	Breast	ITGB3_N365S_7	HLA-C15:02	LSMDSSSVL	0.9991	0.7561	0.1646	18.27	0.1371	2.21	1/982	1/7748
SNV	Breast	NOTCH2_V1666F_8	HLA-C15:02	LSYPLVSFV	0.9993	0.8491	0.068	26.03	0.1747	52.42	1/982	1/7748
SNV	Breast	PHF20_Q750L_7	HLA-A02:01	QLLGDVLRV	0.9974	0.5544	0.217	1.59	0.0313	30.85	1/982	1/7748
SNV	Breast	SEH1L_R176H_3	HLA-C15:02	SSHAHSPMI	0.999	0.8734	0.1477	65.41	0.3168	19.47	1/982	1/7748
SNV	Breast	SEH1L_R176H_1	HLA-C15:02	HAHSPMIAV	0.9996	0.9403	0.0441	6.7	0.0577	19.47	1/982	1/7748
SNV	Breast	CARF_H237R_2	HLA-C07:02	FRKQQTQSV	0.7592	0.919	0.1925	149.14	0.2366	3.32	1/982	1/7748
SNV	Breast	CYB5R1_Q299L_9	HLA-C05:01	NLDKLGYSL	0.9999	0.9291	0.043	5.13	0.058	57.92	1/982	1/7748
SNV	Breast	DPP4_G741E_7	HLA-C05:01	YTDEDHEI	1	0.8933	0.0278	39.44	0.156	7.06	1/982	1/7748
SNV	Breast	DPP4_G741E_7	HLA-C05:01	YTDEDHEIA	0.9995	0.8817	0.2409	147.66	0.2537	7.06	1/982	1/7748
SNV	Breast	PLIN2_D88H_1	HLA-C07:02	HRIEERLPI	0.913	0.951	0.1834	233.66	0.2882	63.48	1/982	1/7748
SNV	Breast	RBM41_Q245H_3	HLA-B07:02	AAHGKGPSL	0.9916	0.6235	0.1056	28.81	0.1749	15.01	1/982	1/7748
SNV	Breast	TMEM67_A279V_7	HLA-C07:02	FIFENTVGL	0.6105	0.9191	1.0224	45.75	0.1248	2.88	1/982	1/7748
SNV	Breast	TMEM67_A279V_7	HLA-C05:01	FIFENTVGL	0.9658	0.9675	0.2238	17.46	0.1169	2.88	1/982	1/7748
SNV	Breast	ATAD2_I827M_4	HLA-A02:01	TLDMPVLFGV	0.9937	0.8499	0.3101	55.29	0.3153	9.72	1/982	1/7748
SNV	Breast	ATAD2_I827M_5	HLA-C03:04	YTLDMPVLF	0.9908	0.9904	0.1825	16.7	0.1228	9.72	1/982	1/7748
SNV	Breast	CYP4Z1_E59A_2	HLA-C03:04	KAFYPVKEF	0.988	0.9889	0.6144	21.3	0.1434	508.72	1/982	1/7748
SNV	Breast	AP3B1_T119S_8	HLA-B15:03	LALLSISSF	0.9924	0.6905	0.0614	275.18	0.7962	46.77	1/982	1/7748
SNV	Breast	AP3B1_T119S_8	HLA-C12:03	LALLSISSF	0.8778	0.9786	0.222	31.53	0.2865	46.77	1/982	1/7748
SNV	Breast	AP3B1_T119S_4	HLA-C12:03	SISSFQRAL	0.9983	0.9263	0.4894	101.99	0.5274	46.77	1/982	1/7748
SNV	Breast	ATP11C_R803I_8	HLA-B15:03	LQKAQIVIM	0.8544	0.8204	0.0935	5.56	0.1093	4.2	1/982	1/7748
SNV	Breast	FAT1_F2671L_9	HLA-A02:05	GLENEFFTL	0.9826	0.5245	1.5851	499.92	0.5091	4.82	1/982	1/7748
SNV	Breast	NAPA_P233L_8	HLA-B15:03	QKYEELFLAF	0.9578	0.8143	1.0144	93.65	0.5363	70.09	1/982	1/7748
SNV	Breast	RGS12_D54E_4	HLA-B39:10	SPAEFVGL	0.7741	0.885	0.5626	28.26	0.1602	14.99	1/982	1/7748
SNV	Breast	RGS12_D54E_8	HLA-B15:03	VMRGSPAEF	0.9368	0.7985	0.0661	3.31	0.0596	14.99	1/982	1/7748
SNV	Breast	RGS12_D54E_8	HLA-C12:03	VMRGSPAEF	0.9946	0.9774	0.4612	84.03	0.4787	14.99	1/982	1/7748
SNV	Breast	SMOC2_F356L_7	HLA-C12:03	RVVHWYLKL	0.5662	0.9894	1.031	415.91	0.9992	26.19	1/982	1/7748
SNV	Breast	ZNF473_Q805R_1	HLA-B15:03	RRIHTGEKPY	0.8528	0.7659	1.9636	183.2	0.698	10.56	1/982	1/7748
SNV	Breast	ABCB8_V161M_7	HLA-A02:01	ALGAALMNV	0.99	0.8016	0.172	2.32	0.0524	5.24	1/982	1/7748
SNV	Breast	ABCB8_V161M_3	HLA-A02:01	ALMNVQIPL	0.9941	0.6175	0.1243	4.29	0.0923	5.24	1/982	1/7748
SNV	Breast	RALBP1_E426D_4	HLA-B57:01	LSKDERLW	0.9998	0.9743	0.3936	149.85	0.3236	89.54	1/982	1/7748
SNV	Breast	ZXDC_F757L_2	HLA-B57:01	HLHASQNSW	0.9893	0.9837	0.2823	27.11	0.1847	16.31	1/982	1/7748
SNV	Breast	DNM1_E660Q_4	HLA-B15:01	RQVQTIRNL	0.9931	0.8718	0.6189	33.22	0.1787	3.15	1/982	1/7748
SNV	Breast	GLCE_G389A_8	HLA-B08:01	RLIAKGKAF	0.6719	0.6413	0.4094	388.04	0.2997	15.34	1/982	1/7748
SNV	Breast	GLCE_G389A_8	HLA-B15:01	RLIAKGKAF	0.9965	0.7978	0.0695	2.32	0.0186	15.34	1/982	1/7748
SNV	Breast	GLCE_G389A_2	HLA-C03:03	KAFLDNITI	0.9876	0.9863	0.215	19.26	0.135	15.34	1/982	1/7748
SNV	Breast	IQGAP3_D1116G_6	HLA-B15:01	VQRRLGIAL	0.9933	0.6823	0.2303	86.87	0.2735	76.24	1/982	1/7748
SNV	Breast	KIAA0430_G133R_9	HLA-A31:01	GTSSLIHPR	0.991	0.5453	0.0106	13.53	0.0575	25.52	1/982	1/7748
SNV	Breast	KIAA0430_G133R_1	HLA-A31:01	RALLDSQSTR	0.9619	0.5975	0.6161	275.9	0.3384	25.52	1/982	1/7748
SNV	Breast	KIAA0430_G133R_7	HLA-C03:03	SSLIHPRAL	0.9993	0.9764	0.0944	42.26	0.1889	25.52	1/982	1/7748
SNV	Breast	KIAA0922_G178A_5	HLA-B15:01	TSSYAVLSY	0.9886	0.8676	0.4444	333.4	0.4495	16.9	1/982	1/7748
SNV	Breast	PIK3C2B_H774P_2	HLA-C03:03	FPQPDSVIL	0.9973	0.9924	0.5685	119.22	0.2928	18.76	1/982	1/7748
SNV	Breast	TECR_A27T_9	HLA-A02:01	FLDKVEPHT	0.9683	0.7624	0.4094	62.72	0.3315	52	1/982	2/7748
SNV	Breast	TECR_A27T_9	HLA-A02:01	FLDKVEPHTTI	0.9939	0.5864	0.783	88.73	0.3761	52	1/982	2/7748
SNV	Breast	USP32_I1293T_4	HLA-C07:01	GRWTKSQKI	0.9823	0.6503	0.1809	459.57	0.1687	11.23	1/982	1/7748
SNV	Breast	UTP14A_E506K_4	HLA-C07:01	QRPKRVQTL	0.9947	0.601	0.0975	103.06	0.0883	29.58	1/982	2/7748
SNV	Breast	ABCA5_P1572L_9	HLA-C16:01	SSILAYKIL	0.8698	0.9748	1.153	425.53	0.7927	7.39	1/982	1/7748
SNV	Breast	ABCA5_P1572L_2	HLA-C16:01	ILKEDVQSL	0.8848	0.9839	0.7424	108.02	0.4412	7.39	1/982	1/7748
SNV	Breast	ABCA5_P1572L_2	HLA-C03:04	ILKEDVQSL	0.9838	0.9895	0.3364	463.24	0.4903	7.39	1/982	1/7748
SNV	Breast	AFF1_I214M_9	HLA-C03:04	SPVPPLSPM	0.9964	0.9861	0.4014	337.35	0.4389	25	1/982	1/7748
SNV	Breast	GPX2_E81D_2	HLA-B44:03	EDILNSLKY	0.8877	0.8651	0.3121	315.45	0.3728	5.49	1/982	1/7748
SNV	Breast	GPX2_E81D_3	HLA-B44:03	NEDILNSLKY	0.999	0.8632	0.1218	9.79	0.1224	5.49	1/982	1/7748
SNV	Breast	KLF4_K409Q_5	HLA-C16:01	KTYTQSSHL	0.9891	0.9789	0.0731	23.77	0.1865	51.07	1/982	1/7748
SNV	Breast	PIK3CA_Q546P_3	HLA-B44:03	TEPEKDFLW	0.9989	0.99	0.218	28.61	0.1776	8.72	1/982	2/7748
SNV	Breast	PIK3CA_Q546P_6	HLA-B44:03	SEITEPEKDF	0.9947	0.9065	0.0851	3.23	0.0654	8.72	1/982	2/7748
SNV	Breast	PLK4_R371Q_8	HLA-B44:03	AEERPHSQY	0.999	0.9497	0.083	2.95	0.059	2.02	1/982	1/7748
SNV	Breast	PLK4_R371Q_7	HLA-B44:03	EERPHSQYL	0.9452	0.9077	0.2009	154.81	0.3169	2.02	1/982	1/7748
SNV	Breast	PLK4_R371Q_8	HLA-B44:03	AEERPHSQYL	0.9841	0.9333	0.3448	491.88	0.4109	2.02	1/982	1/7748
SNV	Breast	XXYLT1_F242L_7	HLA-B44:03	RELFEELDSF	0.9956	0.9743	0.0935	70.85	0.2578	9.29	1/982	1/7748
SNV	Breast	C17orf75_S158F_8	HLA-A03:01	VVCFLGGFEK	0.9908	0.5599	0.406	105.73	0.2862	70.55	1/982	1/7748
SNV	Breast	MMAA_I389M_10	HLA-B57:01	RTHPTVREQM	0.9981	0.8479	0.865	201.17	0.3665	12.26	1/982	1/7748
SNV	Breast	NOL12_E29K_4	HLA-B27:05	KRRKYLTGF	0.9988	0.6218	0.1914	6.27	0.1583	3.44	1/982	1/7748
SNV	Breast	NOL12_E29K_3	HLA-B27:05	RRKYLTGFHK	0.9995	0.6683	0.2193	65.88	0.3627	3.44	1/982	1/7748
SNV	Breast	OLFM2_R213H_6	HLA-B57:01	RAMGSHFGSW	0.9998	0.9902	0.0194	3.6	0.0449	9.45	1/982	1/7748
SNV	Breast	TBC1D31_R475T_6	HLA-B27:05	SRKLLTVLQR	0.9995	0.8065	0.4199	89.59	0.3955	11.4	1/982	1/7748
SNV	Breast	TBC1D31_R475T_7	HLA-B57:01	KSRKLLTVL	0.9818	0.9625	0.3063	72.28	0.2596	11.4	1/982	1/7748
SNV	Breast	ZBTB11_I689M_4	HLA-B57:01	KTFMYKHGL	0.9848	0.8574	0.8017	131.11	0.3041	25.93	1/982	1/7748
SNV	Breast	ZBTB11_I689M_2	HLA-C02:02	FMYKHGLKL	0.6035	0.9811	0.0251	11.56	0.0219	25.93	1/982	1/7748
SNV	Breast	ZNF286B_T488A_2	HLA-B57:01	RAHTGEKPF	0.9535	0.9857	0.5757	456.27	0.4776	1.28	1/982	1/7748
SNV	Breast	ZNF366_S713Y_5	HLA-B27:05	RRGPYFSDY	0.9979	0.7542	0.1474	8.49	0.1808	2.33	1/982	1/7748
SNV	Breast	ZNF366_S713Y_6	HLA-B27:05	TRRGPYFSDY	0.9993	0.635	0.7686	307.28	0.5379	2.33	1/982	1/7748
SNV	Breast	ZNF366_S713Y_5	HLA-B27:05	RRGPYFSDYLY	0.9999	0.7803	0.1389	34.16	0.2941	2.33	1/982	1/7748
SNV	Breast	ZNF366_S713Y_8	HLA-B57:01	QSTRRGPYF	0.914	0.9373	0.7624	235.84	0.3897	2.33	1/982	1/7748
SNV	Breast	ZNF562_N35D_3	HLA-B57:01	RSDSYQDSVTF	0.9996	0.9744	0.452	257.81	0.4024	12.51	1/982	1/7748
SNV	Breast	ATP2A2_T591A_8	HLA-C07:02	IKYETNLAF	0.7712	0.9626	0.2126	191.29	0.2647	47.01	1/982	1/7748
SNV	Breast	EMC1_V22I_2	HLA-A03:01	AIYEDQVGK	0.9974	0.6053	0.1724	3.25	0.0309	27.51	1/982	1/7748
SNV	Breast	EMC1_V22I_3	HLA-A03:01	AAIYEDQVGK	0.7376	0.6129	0.7009	34.31	0.1756	27.51	1/982	1/7748
SNV	Breast	EMC1_V22I_8	HLA-B15:01	LLIPAAAIY	0.9989	0.919	0.062	2.65	0.023	27.51	1/982	1/7748
SNV	Breast	EMC1_V22I_9	HLA-B15:01	TLLIPAAAIY	0.9938	0.93	0.6657	115.62	0.2999	27.51	1/982	1/7748
SNV	Breast	EMC1_V22I_1	HLA-C07:02	IYEDQVGKF	0.9144	0.9443	0.0638	219.57	0.2809	27.51	1/982	1/7748
SNV	Breast	EMILIN2_E961K_5	HLA-B15:01	TLTPKRDAY	0.9624	0.7582	0.4494	55.24	0.2287	1.54	1/982	1/7748
SNV	Breast	FN3K_P235L_5	HLA-B15:01	IIYDLASFY	0.9984	0.9006	0.1565	30.83	0.1726	56.13	1/982	1/7748
SNV	Breast	MIA3_I387V_9	HLA-A02:01	ILTTWGDTV	0.9687	0.5708	0.2542	348.81	0.5971	62.52	1/982	1/7748
SNV	Breast	NT5DC2_H29Y_9	HLA-B15:01	LLEKTTASY	0.9964	0.8586	0.1466	16.24	0.1258	12.91	1/982	1/7748
SNV	Breast	NT5DC2_H29Y_10	HLA-B15:01	TLLEKTTASY	0.9996	0.8647	0.348	138.78	0.3236	12.91	1/982	1/7748
SNV	Breast	RHBDL3_A256V_9	HLA-C07:02	TRIGLVYVV	0.883	0.9403	0.3064	251.49	0.2968	5.39	1/982	1/7748
SNV	Breast	TBC1D2_I828V_7	HLA-C07:02	FRYALAVF	0.9978	0.9626	1.073	493.1	0.3954	19.54	1/982	1/7748
SNV	Breast	TBC1D2_I828V_6	HLA-C07:02	RYALAVFKY	0.6356	0.9538	1.4939	239.64	0.2912	19.54	1/982	1/7748
SNV	Breast	SHROOM2_T755I_4	HLA-C07:01	RRFIAEQKL	0.9979	0.825	0.0177	137.17	0.1018	5.85	1/982	1/7748
SNV	Breast	ARHGEF9_A273V_4	HLA-A68:01	VAAVLAVMR	0.9793	0.7991	0.203	24.06	0.1938	22.41	1/982	1/7748
SNV	Breast	ARHGEF9_A273V_5	HLA-A68:01	YVAAVLAVMR	0.995	0.8268	0.1063	12.65	0.1367	22.41	1/982	1/7748
SNV	Breast	ARHGEF9_A273V_5	HLA-C02:10	YVAAVLAVM	0.8835	0.9857	0.1214	18.93	0.0432	22.41	1/982	1/7748
SNV	Breast	CKS1B_L37R_8	HLA-B15:03	KLVPKTHRM	0.6322	0.7213	0.6455	255.34	0.7782	85.43	1/982	1/7748
SNV	Breast	COL12A1_A14T_7	HLA-B15:03	ALAALGTAL	0.5919	0.8746	0.4166	406.83	0.8924	20.73	1/982	1/7748
SNV	Breast	COL12A1_A14T_7	HLA-C17:01	ALAALGTAL	0.5125	0.9881	0.3495	244.83	0.3384	20.73	1/982	1/7748
SNV	Breast	COL12A1_A14T_6	HLA-C17:01	LAALGTALL	0.7013	0.9882	0.1368	264.21	0.3513	20.73	1/982	1/7748
SNV	Breast	COL12A1_A14T_5	HLA-C17:01	AALGTALLL	0.8374	0.9852	0.0485	208.96	0.3115	20.73	1/982	1/7748
SNV	Breast	COL12A1_A14T_5	HLA-C02:10	AALGTALLL	0.7913	0.9786	0.0884	443.47	0.4368	20.73	1/982	1/7748
SNV	Breast	CXorf40B_I89F_5	HLA-C17:01	GLVDFGETL	0.5314	0.8636	0.1615	234.94	0.3314	22.56	1/982	1/7748
SNV	Breast	MDN1_A4126D_4	HLA-B15:03	KQRDLSDLF	0.7284	0.5475	0.0199	1.26	0.0074	6.06	1/982	1/7748
SNV	Breast	NOMO1_E584Q_2	HLA-B15:03	VQFRQTGY	0.9099	0.6277	0.8615	25.22	0.2959	18.51	1/982	1/7748
SNV	Breast	NOMO1_E584Q_2	HLA-B15:03	VQFRQTGYM	0.7275	0.7028	0.0426	10.09	0.1645	18.51	1/982	1/7748
SNV	Breast	PDGFRA_T361S_7	HLA-C17:01	TLIENLSEI	0.58	0.9235	0.2281	61.21	0.1557	7.82	1/982	1/7748
SNV	Breast	PDGFRA_T361S_7	HLA-C02:10	TLIENLSEI	0.6062	0.978	1.1159	275.92	0.3247	7.82	1/982	1/7748
SNV	Breast	PTBP2_H198Q_3	HLA-B15:03	VLQQIFSKF	0.804	0.5453	0.1229	167.78	0.6747	2.02	1/982	1/7748
SNV	Breast	PTBP2_H198Q_7	HLA-C17:01	VTLDVLQQI	0.674	0.9693	0.1923	102.53	0.2154	2.02	1/982	1/7748
SNV	Breast	PTBP2_H198Q_7	HLA-C02:10	VTLDVLQQI	0.5162	0.9786	0.296	234.48	0.292	2.02	1/982	1/7748
SNV	Breast	VPS51_R574Q_4	HLA-B15:03	TARQLLTHY	0.9401	0.5213	0.3927	245.62	0.7688	48.78	1/982	1/7748
SNV	Breast	ZSWIM3_R329K_8	HLA-C02:10	SANPSFKKL	0.6647	0.9864	0.069	457.63	0.4458	6.05	1/982	1/7748
SNV	Breast	LTA4H_E108K_1	HLA-C15:02	KTSPKSSAL	0.9991	0.8649	0.0441	5.68	0.0484	32.84	1/982	1/7748
SNV	Breast	NKRF_N521I_9	HLA-C15:02	KTQPTVINI	0.9993	0.8588	0.0204	2.82	0.0131	7.75	1/982	1/7748
SNV	Breast	NKRF_N521I_9	HLA-C15:02	KTQPTVINIL	0.9978	0.8299	0.5941	306.07	0.6248	7.75	1/982	1/7748
SNV	Breast	PAQR4_S239F_8	HLA-C04:01	RFDYWGNF	0.9988	0.773	0.8075	309.92	0.1216	84.79	1/982	1/7748
SNV	Breast	PIK3CA_E542K_8	HLA-C15:02	STRDPLSKI	0.996	0.6932	0.1871	19.94	0.1456	5	3/982	4/7748
SNV	Breast	S1PR4_P238S_3	HLA-A31:01	KASRPAARR	0.9849	0.7385	0.3524	32.5	0.1119	1.79	1/982	1/7748
SNV	Breast	WDR62_R200G_5	HLA-C15:02	KVSCGVIAL	0.9988	0.8891	0.2496	91.98	0.3789	5.14	1/982	1/7748
SNV	Breast	ZNF608_G796V_4	HLA-C15:02	TIMVEPITV	0.9984	0.9369	0.6275	204.18	0.5261	1.18	1/982	1/7748
SNV	Breast	PIH1D1_L103V_2	HLA-C03:03	SVGEPHAEL	0.9993	0.9965	0.0861	26.85	0.1592	68.53	1/982	1/7748
SNV	Breast	PIH1D1_L103V_2	HLA-C02:02	SVGEPHAEL	0.954	0.9763	0.2844	313.19	0.3522	68.53	1/982	1/7748
SNV	Breast	SACS_P871L_3	HLA-C03:03	HSLLPSAVL	0.9997	0.9976	0.1442	16.64	0.1224	1.44	1/982	1/7748
SNV	Breast	SIM2_T253M_7	HLA-B27:05	SRVTEVMGY	0.9995	0.9236	0.0455	1.2	0.0149	1.13	1/982	1/7748
SNV	Breast	WDFY3_V2433I_7	HLA-B27:05	ARYRRAISY	0.9995	0.8938	0.0902	1.48	0.0347	6.87	1/982	1/7748
SNV	Breast	FAT1_V2360L_9	HLA-A30:01	QSRQHTIFL	0.9604	0.687	0.08	328.65	0.1243	12.3	1/982	1/7748
SNV	Breast	FAT1_V2360L_9	HLA-C15:02	QSRQHTIFL	0.9892	0.7631	0.3683	336.77	0.6562	12.3	1/982	1/7748
SNV	Breast	MICAL3_A1629V_4	HLA-A30:01	ASGVPRPRK	0.98	0.8992	0.5789	355.57	0.1349	4.21	1/982	1/7748
SNV	Breast	TSC1_L129H_3	HLA-C15:02	VVHTTGVLV	0.9961	0.7796	0.362	96.84	0.3883	6.1	1/982	1/7748
SNV	Breast	TSC1_L129H_1	HLA-C15:02	HTTGVLVLI	0.999	0.9476	0.2236	46.9	0.2635	6.1	1/982	1/7748
SNV	Breast	ABCA7_G1955V_1	HLA-A24:02	VMDPSARRF	0.9737	0.7008	0.5855	70.99	0.4047	6.96	1/982	1/7748
SNV	Breast	ABCA7_G1955V_2	HLA-A03:01	TVMDPSARR	0.886	0.5954	0.4936	168.81	0.341	6.96	1/982	1/7748
SNV	Breast	ABCA7_G1955V_1	HLA-B15:01	VMDPSARRF	0.9369	0.9604	0.6929	151.9	0.3354	6.96	1/982	1/7748
SNV	Breast	ABCA7_G1955V_8	HLA-C03:03	FLDEPTTVM	0.9982	0.997	0.0631	2.89	0.0306	6.96	1/982	1/7748
SNV	Breast	ALG11_I202M_9	HLA-C03:03	GSYVHYPTM	0.9942	0.9551	0.4094	254.38	0.3943	3.99	1/982	1/7748
SNV	Breast	EPHA2_A209T_7	HLA-B15:01	ELLQGLTHF	0.9663	0.9271	0.257	181.61	0.3587	20.2	1/982	1/7748
SNV	Breast	RAD54L_S452L_9	HLA-C03:03	VSSLSSITL	0.9995	0.9923	0.1417	104.07	0.2786	16.31	1/982	1/7748
SNV	Breast	RAD54L_S452L_8	HLA-C03:03	SSLSSITLL	0.9992	0.9918	0.0944	189.79	0.3541	16.31	1/982	1/7748
SNV	Breast	SEMA5A_F228C_8	HLA-B15:01	SSYDIGNCTY	0.9975	0.7153	0.2253	6.13	0.0588	31.04	1/982	1/7748
SNV	Breast	VPS13A_M2316I_2	HLA-B15:01	YIIKNKSKY	0.9972	0.6077	0.1529	16.12	0.1253	7.49	1/982	1/7748
SNV	Breast	ZEB2_V402L_2	HLA-B15:01	KLLMATHGF	0.9514	0.8319	0.0821	130.81	0.3159	11.95	1/982	1/7748
SNV	Breast	BTN3A1_D47H_1	HLA-B35:01	HADLPCHLF	0.9733	0.9304	0.1884	224.24	0.3902	19.24	1/982	1/7748
SNV	Breast	CPQ_R62T_1	HLA-C12:03	TSYERLAL	0.9998	0.9713	0.7194	281.89	0.857	22.05	1/982	1/7748
SNV	Breast	CPQ_R62T_7	HLA-C12:03	YGKAQNTSY	0.589	0.9439	0.3746	59.33	0.3981	22.05	1/982	1/7748
SNV	Breast	CPQ_R62T_1	HLA-C12:03	TSYERLALL	0.9984	0.9667	0.0376	4.86	0.0579	22.05	1/982	1/7748
SNV	Breast	CTLA4_L196V_3	HLA-B35:01	SPVTTGVY	0.9718	0.8142	0.5905	181.67	0.3686	9.26	1/982	1/7748
SNV	Breast	CTLA4_L196V_1	HLA-C12:03	VTTGVYVKM	0.7838	0.9839	0.4612	271.42	0.844	9.26	1/982	1/7748
SNV	Breast	DDR2_S123I_2	HLA-C12:03	YIRDGTRWI	0.8554	0.966	1.2511	99.45	0.5207	10.9	1/982	1/7748
SNV	Breast	DECR1_R91P_4	HLA-C12:03	IASPKMDVL	0.9931	0.9751	0.105	14.33	0.1683	113.01	1/982	1/7748
SNV	Breast	DIP2C_A739V_3	HLA-A25:01	AVVTGTSYY	0.9149	0.8347	0.1806	269.22	0.0472	6.85	1/982	1/7748
SNV	Breast	DIP2C_A739V_4	HLA-B35:01	CAVVTGTSY	0.9907	0.9492	0.0253	152.64	0.3507	6.85	1/982	1/7748
SNV	Breast	DIP2C_A739V_3	HLA-B35:01	AVVTGTSYY	0.9319	0.9446	0.5189	121.55	0.3274	6.85	1/982	1/7748
SNV	Breast	DOCK8_A1670G_4	HLA-A25:01	HAAGLVAEY	0.974	0.9461	0.0084	11.87	0.0084	11.5	1/982	1/7748
SNV	Breast	DOCK8_A1670G_4	HLA-B35:01	HAAGLVAEY	0.9974	0.9462	0.0081	1.1	0.0068	11.5	1/982	1/7748
SNV	Breast	DOCK8_A1670G_4	HLA-C12:03	HAAGLVAEY	0.503	0.9909	0.0156	5.49	0.0659	11.5	1/982	1/7748
SNV	Breast	ERMAP_K95E_5	HLA-B35:01	MPEYEGRTV	0.9372	0.9384	0.8455	175.83	0.3652	6.39	1/982	1/7748
SNV	Breast	ERMAP_K95E_5	HLA-B35:01	MPEYEGRTVL	0.9911	0.931	0.7955	26.53	0.1948	6.39	1/982	1/7748
SNV	Breast	ETFB_E243K_3	HLA-C12:03	TTKDLVAKL	0.9647	0.9625	0.1621	61.03	0.404	52.15	1/982	1/7748
SNV	Breast	FANK1_R250T_8	HLA-C12:03	SGWTPLMTV	0.6475	0.9835	0.8505	434.69	1.0173	3.4	1/982	1/7748
SNV	Breast	GOLGA4_E449K_3	HLA-C12:03	TSKEERISL	0.9977	0.9758	0.4101	132.26	0.5969	15.44	1/982	1/7748
SNV	Breast	HIVEP1_A644T_7	HLA-C12:03	HVGTVHTQL	0.7765	0.9372	0.7258	209.58	0.7507	7.85	1/982	1/7748
SNV	Breast	HSD17B4_P358A_2	HLA-B35:01	DAKDLKFIY	0.9621	0.6585	0.1941	17.92	0.1694	16.65	1/982	1/7748
SNV	Breast	IL7R_K120T_2	HLA-C12:03	KTIDLTTIV	0.974	0.9801	0.1836	13.91	0.1638	38.73	1/982	1/7748
SNV	Breast	JAK2_R115I_9	HLA-C12:03	STRHNVLYI	0.5617	0.9291	0.5604	274.52	0.8479	10.21	1/982	1/7748
SNV	Breast	MPHOSPH8_A564E_2	HLA-B18:01	DEIPSNVL	0.9985	0.9263	0.1025	362.74	0.2391	16.09	1/982	1/7748
SNV	Breast	MUC16_S6608L_4	HLA-A25:01	ESYLSVPAY	0.9795	0.5511	0.0614	37.38	0.0147	1.34	1/982	1/7748
SNV	Breast	MUC16_S6608L_4	HLA-B35:01	ESYLSVPAY	0.9647	0.7218	0.132	7.14	0.1077	1.34	1/982	1/7748
SNV	Breast	NDUFA2_T75R_7	HLA-C12:03	YAFGQERNV	0.9406	0.9934	0.143	13.96	0.1643	149.9	1/982	1/7748
SNV	Breast	NDUFA2_T75R_5	HLA-C12:03	FGQERNVPL	0.9987	0.9675	0.4986	401.23	0.9857	149.9	1/982	1/7748
SNV	Breast	NOTCH2_R1604S_8	HLA-C12:03	SAAMKKQSM	0.9819	0.9587	0.2075	25.28	0.2448	25.09	1/982	1/7748
SNV	Breast	PAM_R80P_2	HLA-B35:01	MPIPVDEEA	0.9432	0.9749	0.1966	18.27	0.1705	30.07	1/982	1/7748
SNV	Breast	PAM_R80P_2	HLA-B35:01	MPIPVDEEAF	0.9981	0.9745	0.1281	1.6	0.0256	30.07	1/982	1/7748
SNV	Breast	PRDM10_P45L_1	HLA-B35:01	LPQQVVYTA	0.8484	0.7703	0.1966	378.77	0.454	3.47	1/982	1/7748
SNV	Breast	SBF2_S228F_9	HLA-B18:01	TENKVLFHF	0.9978	0.7465	0.0123	4.44	0.0332	3.89	1/982	1/7748
SNV	Breast	STXBP1_A136T_6	HLA-B18:01	TEINITFLPY	0.9902	0.8469	0.1211	111.26	0.1607	10.39	1/982	1/7748
SNV	Breast	STXBP1_A136T_8	HLA-C12:03	TLTEINITF	0.8261	0.9838	0.825	329.99	0.912	10.39	1/982	1/7748
SNV	Breast	SWSAP1_L75F_8	HLA-B35:01	YPPSTREF	0.9885	0.8692	1.0649	262.18	0.4076	12.05	1/982	1/7748
SNV	Breast	SWSAP1_L75F_8	HLA-B35:01	YPPSTREFF	0.992	0.8738	0.1666	27.94	0.1982	12.05	1/982	1/7748
SNV	Breast	SWSAP1_L75F_5	HLA-C12:03	STREFFRLL	0.8712	0.9872	0.3089	64.02	0.4151	12.05	1/982	1/7748
SNV	Breast	SWSAP1_L75F_10	HLA-C12:03	FQYPPSTREF	0.9999	0.9899	0.4515	94.57	0.5072	12.05	1/982	1/7748
SNV	Breast	SYNE1_N4215Y_11	HLA-B35:01	SPEHKEINHLY	0.9972	0.7586	0.7785	155.72	0.3528	2.52	1/982	1/7748
SNV	Breast	SYNE1_N4215Y_3	HLA-C12:03	HLYDQWLDL	0.95	0.9903	0.8505	419.37	1.0026	2.52	1/982	1/7748
SNV	Breast	TNPO3_S89L_7	HLA-C12:03	HASLRDLLL	0.8116	0.971	0.4036	218.68	0.7668	38.37	1/982	1/7748
SNV	Breast	TPGS2_H137D_1	HLA-C04:01	DFDSRSVIF	0.9965	0.6887	0.0901	20.44	0.0366	26.73	1/982	1/7748
SNV	Breast	TRIM21_R64Q_1	HLA-B35:01	QPNRQLANM	0.901	0.9151	0.7084	217.63	0.3871	41.08	1/982	1/7748
SNV	Breast	TRIP13_I343M_1	HLA-C12:03	MIYPRQQL	0.9997	0.9837	1.8644	293.73	0.871	18.03	1/982	1/7748
SNV	Breast	TRIP13_I343M_2	HLA-C12:03	QMIYPRQQL	0.9933	0.9894	1.6467	458.1	1.0389	18.03	1/982	1/7748
SNV	Breast	TRIP13_I343M_1	HLA-C12:03	MIYPRQQLL	0.9962	0.9837	0.1244	3.35	0.0321	18.03	1/982	1/7748
SNV	Breast	USP32_P628L_9	HLA-C12:03	VNMGNVPSL	0.9467	0.9898	1.0691	111.65	0.5516	14.42	1/982	1/7748
SNV	Breast	UTRN_D2790N_4	HLA-C12:03	SVDNRLKQL	0.7184	0.9396	0.7544	325.53	0.9068	16.84	1/982	1/7748
SNV	Breast	VSTM4_E284K_6	HLA-B35:01	LPKIAKENLTY	0.9978	0.7208	0.5189	29.2	0.2014	3.57	1/982	1/7748
SNV	Breast	VSTM4_E284K_3	HLA-C12:03	IAKENLTYA	0.9306	0.9834	0.934	278.5	0.8528	3.57	1/982	1/7748
SNV	Breast	ZNF776_H359Y_5	HLA-C12:03	KSFNYKCNL	0.6806	0.9899	0.786	312.79	0.8925	9.87	1/982	1/7748
SNV	Breast	ABHD6_K84N_5	HLA-C03:03	FSAHNDMWL	0.9951	0.9938	0.2919	450.67	0.4858	3.06	1/982	1/7748
SNV	Breast	ABHD6_K84N_5	HLA-C03:04	FSAHNDMWL	0.9951	0.9938	0.408	450.67	0.4858	3.06	1/982	1/7748
SNV	Breast	CPAMD8_T1514A_3	HLA-B15:01	LQAAAIPSL	0.9971	0.7855	0.1275	119.15	0.3037	2.01	1/982	1/7748
SNV	Breast	CPAMD8_T1514A_3	HLA-C03:03	LQAAAIPSL	0.9852	0.9834	1.1736	98.16	0.2726	2.01	1/982	1/7748
SNV	Breast	CPAMD8_T1514A_3	HLA-C03:04	LQAAAIPSL	0.9852	0.9834	1.2944	98.16	0.2726	2.01	1/982	1/7748
SNV	Breast	GDPGP1_S213L_3	HLA-C03:03	LALVNHLHL	0.9995	0.9928	0.0559	75.02	0.2445	1.3	1/982	1/7748
SNV	Breast	GDPGP1_S213L_3	HLA-C03:04	LALVNHLHL	0.9995	0.9928	0.0478	75.02	0.2445	1.3	1/982	1/7748
SNV	Breast	LIX1L_A165E_4	HLA-C03:03	RSAEKIALM	0.9976	0.994	0.1417	51.51	0.2049	10.25	1/982	1/7748
SNV	Breast	LIX1L_A165E_4	HLA-C03:04	RSAEKIALM	0.9976	0.994	0.1441	51.51	0.2049	10.25	1/982	1/7748
SNV	Breast	MEIS2_P416S_6	HLA-C03:03	QMTPHSTQL	0.9775	0.9849	0.1915	366.07	0.4522	1.22	1/982	1/7748
SNV	Breast	MEIS2_P416S_6	HLA-C03:04	QMTPHSTQL	0.9775	0.9849	0.2189	366.07	0.4522	1.22	1/982	1/7748
SNV	Breast	NEU3_L114R_3	HLA-B15:01	ATRPGHRTM	0.9432	0.7295	0.9734	174.1	0.3532	1.75	1/982	1/7748
SNV	Breast	NEU3_L114R_3	HLA-C03:03	ATRPGHRTM	0.8215	0.918	0.4094	259.47	0.397	1.75	1/982	1/7748
SNV	Breast	NEU3_L114R_3	HLA-C03:04	ATRPGHRTM	0.8215	0.918	0.3251	259.47	0.397	1.75	1/982	1/7748
SNV	Breast	OGT_T186M_5	HLA-B15:01	KAIEMQPNF	0.9907	0.9717	0.7262	355.21	0.4603	11.41	1/982	1/7748
SNV	Breast	OGT_T186M_5	HLA-C03:03	KAIEMQPNF	0.9917	0.9949	0.7094	43.5	0.191	11.41	1/982	1/7748
SNV	Breast	OGT_T186M_5	HLA-C03:04	KAIEMQPNF	0.9917	0.9949	0.7448	43.5	0.191	11.41	1/982	1/7748
SNV	Breast	PRKCQ_R616Q_3	HLA-C03:03	FVQEPEKRL	0.9984	0.9922	0.1264	374.24	0.4557	1.2	1/982	1/7748
SNV	Breast	PRKCQ_R616Q_3	HLA-C03:04	FVQEPEKRL	0.9984	0.9922	0.1144	374.24	0.4557	1.2	1/982	1/7748
SNV	Breast	ALPK1_H1198D_7	HLA-A02:05	LTDPQIDSV	0.9298	0.6241	0.84	443.5	0.4841	4.36	1/982	1/7748
SNV	Breast	ALPK1_H1198D_8	HLA-A02:05	YLTDPQIDSV	0.9977	0.6907	0.2631	11.02	0.0784	4.36	1/982	1/7748
SNV	Breast	ANAPC1_G1207E_4	HLA-A02:05	TSIELLLGV	0.9881	0.5657	0.2731	137.12	0.2904	1.87	1/982	1/7748
SNV	Breast	ANAPC1_G1207E_8	HLA-B38:01	GHEMTSIEL	0.9976	0.923	0.1442	221.16	0.1151	1.87	1/982	1/7748
SNV	Breast	ANAPC1_G1207E_7	HLA-B38:01	HEMTSIELL	0.861	0.921	0.1588	161.38	0.0929	1.87	1/982	1/7748
SNV	Breast	ANAPC1_G1207E_4	HLA-C12:03	TSIELLLGV	0.9746	0.988	0.7194	466.09	1.0461	1.87	1/982	1/7748
SNV	Breast	DCAF17_S465R_5	HLA-A02:05	TLLKRIPLV	0.9925	0.5427	0.2435	270.42	0.391	4.38	1/982	1/7748
SNV	Breast	DCAF17_S465R_2	HLA-C07:02	KRIPLVESW	0.7951	0.9699	0.4319	211.88	0.2767	4.38	1/982	1/7748
SNV	Breast	DLG1_D396Y_8	HLA-C12:03	TALKNTSYF	0.8979	0.9598	0.143	32.03	0.2896	9.88	1/982	1/7748
SNV	Breast	EDEM3_M458L_6	HLA-B38:01	SHEDRLDSF	0.964	0.8869	0.0764	115.71	0.077	33.81	1/982	1/7748
SNV	Breast	IGSF8_D73E_7	HLA-C07:02	YRPEAPETAL	0.9857	0.9573	0.1399	117.39	0.2109	65.94	1/982	1/7748
SNV	Breast	KPNB1_V666L_7	HLA-C07:02	NYAEYQLCL	0.5187	0.9411	0.3508	263.63	0.303	55.35	1/982	1/7748
SNV	Breast	LRIG3_I204M_2	HLA-C12:03	RMSAIPPKM	0.9004	0.9632	0.6408	88.61	0.4911	11.46	1/982	1/7748
SNV	Breast	LRIG3_I204M_1	HLA-C12:03	MSAIPPKMF	0.772	0.962	0.222	57.77	0.3934	11.46	1/982	1/7748
SNV	Breast	RIF1_A582T_7	HLA-C12:03	ILNGTPTLF	0.8677	0.9763	0.7544	113.79	0.5567	5.86	1/982	1/7748
SNV	Breast	TRIM38_V276F_6	HLA-C12:03	HTMCNFSKL	0.9204	0.9616	0.1878	309.82	0.8893	6.6	1/982	1/7748
SNV	Breast	ZNF526_A129T_7	HLA-A02:05	LLAHQDTHL	0.9818	0.5384	0.076	75.96	0.2245	6.74	1/982	1/7748
SNV	Breast	EBF4_A557T_6	HLA-C07:02	QRSAFTPVL	0.9929	0.9527	0.1528	65.75	0.1568	15.16	1/982	1/7748
SNV	Breast	PXMP4_S181L_8	HLA-C07:02	HRSTLQPLL	0.9109	0.9691	0.0926	81.42	0.1743	21.76	1/982	1/7748
SNV	Breast	RAB33A_G137R_2	HLA-C07:02	NRHAVPPLV	0.7944	0.8708	0.2626	455.13	0.3836	3.91	1/982	1/7748
SNV	Breast	TMEM38B_S106L_2	HLA-C07:02	YLYLPVQLL	0.6286	0.993	1.2769	95.27	0.1895	2.76	1/982	1/7748
SNV	Breast	ACSM5_V421I_3	HLA-A31:01	VAIRIRPTR	0.957	0.5582	0.2179	66.31	0.1696	4.95	1/982	1/7748
SNV	Breast	ADH1C_A71D_4	HLA-B40:01	HEADGIVESV	0.9887	0.857	0.1755	4.59	0.174	25.45	1/982	1/7748
SNV	Breast	C10orf107_T130P_8	HLA-C15:05	STFIEPPPI	0.9953	0.9241	0.4286	267.73	0.4174	3.42	1/982	1/7748
SNV	Breast	C10orf107_T130P_8	HLA-C15:05	STFIEPPPIL	0.9975	0.9353	0.9331	275.89	0.424	3.42	1/982	1/7748
SNV	Breast	C10orf107_T130P_7	HLA-C03:04	TFIEPPPIL	0.9372	0.9872	0.7675	429.98	0.4782	3.42	1/982	1/7748
SNV	Breast	DENND3_A260T_4	HLA-C15:05	FVMTPTSFL	0.9955	0.9586	0.4422	6.18	0.0309	9.2	1/982	1/7748
SNV	Breast	DENND3_A260T_3	HLA-C15:05	VMTPTSFLM	0.9598	0.9145	1.6593	390.3	0.501	9.2	1/982	1/7748
SNV	Breast	DENND3_A260T_4	HLA-C03:04	FVMTPTSFL	0.9986	0.9935	0.0374	3.5	0.0358	9.2	1/982	1/7748
SNV	Breast	ITGA2_T1095M_9	HLA-C15:05	STFQTVQLM	0.9949	0.8877	0.1628	117.89	0.284	10.74	1/982	1/7748
SNV	Breast	ITGA2_T1095M_9	HLA-C03:04	STFQTVQLM	0.9835	0.9875	0.1825	252.02	0.393	10.74	1/982	1/7748
SNV	Breast	ITGB1_M149L_3	HLA-C15:05	YLLDLSYSM	0.8308	0.9089	1.2799	59.88	0.2012	294.42	1/982	1/7748
SNV	Breast	ITGB1_M149L_9	HLA-C03:04	YPIDLYYLL	0.9944	0.9433	1.0902	130.4	0.3027	294.42	1/982	1/7748
SNV	Breast	ITGB1_M149L_3	HLA-C03:04	YLLDLSYSM	0.9696	0.9878	0.6144	14.54	0.109	294.42	1/982	1/7748
SNV	Breast	NDC1_F142L_8	HLA-C15:05	ITQGQYSLL	0.9962	0.831	0.1935	331.12	0.4645	45.22	1/982	1/7748
SNV	Breast	NDC1_F142L_9	HLA-C03:04	VITQGQYSL	0.985	0.97	1.0357	495.75	0.5014	45.22	1/982	1/7748
SNV	Breast	NFATC2_T152I_8	HLA-C15:05	VAASPRFIL	0.9975	0.8967	0.2941	34.67	0.14	9.62	1/982	1/7748
SNV	Breast	NFATC2_T152I_8	HLA-C03:04	VAASPRFIL	0.9986	0.9837	0.2016	7.58	0.0666	9.62	1/982	1/7748
SNV	Breast	RAB25_A88T_5	HLA-C03:04	GAVGTLLVF	0.9977	0.9844	0.4831	402.06	0.4673	154.53	1/982	1/7748
SNV	Breast	SMYD2_C350W_7	HLA-A29:01	YQAMGVWLY	0.9983	0.5325	0.0283	2.14	0.0279	29.85	1/982	1/7748
SNV	Breast	TIGD2_L500M_3	HLA-C03:04	MLMSDKLVL	0.9916	0.9857	0.894	90.91	0.2646	8.48	1/982	1/7748
SNV	Breast	ZNF350_T385K_5	HLA-C03:04	KAFSKKQKL	0.978	0.9565	0.0912	261.03	0.3978	9.05	1/982	1/7748
SNV	Breast	EXOSC10_K363N_8	HLA-A02:01	LTDPAIVNV	0.9857	0.7456	0.65	101.11	0.3929	25.47	1/982	1/7748
SNV	Breast	EXOSC10_K363N_9	HLA-A02:01	SLTDPAIVNV	0.9967	0.7556	0.4984	2.93	0.0639	25.47	1/982	1/7748
SNV	Breast	GPI_T250A_6	HLA-A02:01	ALSTNATKV	0.9656	0.664	0.2955	325.1	0.5857	32.38	1/982	1/7748
SNV	Breast	KIF4A_I912L_5	HLA-C07:02	HFAELETEL	0.8174	0.9844	0.2402	239.57	0.2911	33.76	1/982	1/7748
SNV	Breast	KIF4A_I912L_5	HLA-C04:01	HFAELETEL	0.9387	0.9439	0.1324	352.31	0.1291	33.76	1/982	1/7748
SNV	Breast	SCN2A_I1912F_5	HLA-B35:01	SAIIFQRAY	0.9951	0.8073	0.0436	8.26	0.1162	1.23	1/982	1/7748
SNV	Breast	SLC35F5_G407E_7	HLA-A02:01	IINGLIETV	0.9958	0.6695	0.5409	6.43	0.1225	12.57	1/982	1/7748
SNV	Breast	SLC35F5_G407E_8	HLA-A02:01	IIINGLIETV	0.9955	0.6164	0.5409	32.26	0.2591	12.57	1/982	1/7748
SNV	Breast	SLC35F5_G407E_4	HLA-A02:01	GLIETVLSEFL	0.9988	0.6373	1.3178	260.36	0.5497	12.57	1/982	1/7748
SNV	Breast	SLC35F5_L368V_8	HLA-C07:02	MFFGFVGVF	0.6994	0.9818	0.1973	233.42	0.2881	12.57	1/982	1/7748
SNV	Breast	SLC47A1_L262V_3	HLA-C07:02	LRVAIPSML	0.9343	0.9671	0.1399	37.21	0.1114	1.02	1/982	1/7748
SNV	Breast	TFAP2C_M218I_3	HLA-B35:01	AVINPTEVF	0.9765	0.9838	0.3889	311.01	0.4291	48.11	1/982	1/7748
SNV	Breast	TP53_V216M_9	HLA-C07:02	DRNTFRHSM	0.8004	0.8228	0.5694	266.43	0.3045	31.51	2/982	3/7748
SNV	Breast	TP53_V216M_5	HLA-C07:02	FRHSMVVPY	0.8633	0.8957	0.0032	54.15	0.1399	31.51	2/982	3/7748
SNV	Breast	AFG3L2_D698G_4	HLA-A02:01	RLIGDEVRI	0.995	0.6365	0.5313	4.95	0.1034	26.37	1/982	1/7748
SNV	Breast	AFG3L2_D698G_4	HLA-A02:01	RLIGDEVRIL	0.9903	0.6386	0.912	235.99	0.5337	26.37	1/982	1/7748
SNV	Breast	CCT6B_V333L_2	HLA-A02:01	ALNSFEDLTV	0.9969	0.8052	0.4143	102.91	0.3952	2.96	1/982	1/7748
SNV	Breast	CCT6B_V333L_9	HLA-C03:03	SLACGGMAL	0.9501	0.9897	0.5074	487.35	0.4985	2.96	1/982	1/7748
SNV	Breast	CCT6B_V333L_3	HLA-C03:03	MALNSFEDL	0.9988	0.9934	0.15	292.96	0.4161	2.96	1/982	1/7748
SNV	Breast	CD22_P754A_1	HLA-B15:01	AMMEDGISY	0.9997	0.8797	0.0182	1.25	0.0036	1.75	1/982	1/7748
SNV	Breast	CD22_P754A_2	HLA-B15:01	NAMMEDGISY	0.997	0.7882	0.5955	12.43	0.1098	1.75	1/982	1/7748
SNV	Breast	CHMP6_E132G_7	HLA-A02:01	ILDETQGAV	0.9863	0.7353	0.3693	7.9	0.1394	49.59	1/982	1/7748
SNV	Breast	COL15A1_G383W_4	HLA-B07:02	VPTWGPTL	0.9979	0.574	0.3242	104.4	0.2673	86.07	1/982	1/7748
SNV	Breast	COL15A1_G383W_4	HLA-B07:02	VPTWGPTLSM	0.996	0.5271	0.1545	6.09	0.08	86.07	1/982	1/7748
SNV	Breast	COL15A1_G383W_5	HLA-C03:03	SVPTWGPTL	0.9713	0.9718	0.1156	69.63	0.2367	86.07	1/982	1/7748
SNV	Breast	DNM1_D652N_6	HLA-A02:01	FMHSMNPQL	0.9937	0.5382	0.026	4	0.0836	8.43	1/982	1/7748
SNV	Breast	DNM1_D652N_6	HLA-C03:03	FMHSMNPQL	0.9876	0.9931	0.0295	60.63	0.2221	8.43	1/982	1/7748
SNV	Breast	GEMIN5_I820V_3	HLA-C03:03	VTVNNKVIL	0.998	0.9857	0.3594	416.99	0.4732	11.33	1/982	1/7748
SNV	Breast	GEMIN5_I820V_2	HLA-C03:03	TVNNKVILL	0.9989	0.982	0.4154	314.05	0.4274	11.33	1/982	1/7748
SNV	Breast	ICA1L_D404H_8	HLA-A02:01	FLPSQLFHL	0.9951	0.7034	0.0031	1.61	0.032	2.96	1/982	1/7748
SNV	Breast	ICA1L_D404H_4	HLA-A02:01	QLFHLGFHV	0.9962	0.7398	0.0123	6.8	0.1268	2.96	1/982	1/7748
SNV	Breast	KLHL18_I385F_6	HLA-A02:01	VLDGQFYV	0.9984	0.6188	1.9916	44.76	0.291	4.84	1/982	1/7748
SNV	Breast	KLHL18_I385F_7	HLA-A02:01	VVLDGQFYV	0.994	0.5078	0.0314	1.44	0.0185	4.84	1/982	1/7748
SNV	Breast	KLHL18_I385F_8	HLA-B15:01	TVVLDGQFY	0.8019	0.6682	0.7153	403.36	0.4819	4.84	1/982	1/7748
SNV	Breast	PTPN22_E719Q_2	HLA-B15:01	IQTYSTSY	0.9991	0.6761	1.3961	149.86	0.3337	1.34	1/982	1/7748
SNV	Breast	PTPN22_E719Q_7	HLA-B15:01	MQAQSIQTY	0.9998	0.6466	0.0004	1.15	0.0023	1.34	1/982	1/7748
SNV	Breast	PTPN22_E719Q_3	HLA-B15:01	SIQTYSTSY	0.9982	0.7244	0.1206	11.25	0.1039	1.34	1/982	1/7748
SNV	Breast	PTPN22_E719Q_8	HLA-B15:01	CMQAQSIQTY	0.9995	0.5719	0.1336	16.9	0.1287	1.34	1/982	1/7748
SNV	Breast	RPS6KB1_L219V_4	HLA-C07:04	YRDVKPENI	0.763	0.7059	0.0094	436	0.0189	24.02	1/982	1/7748
SNV	Breast	SLC39A6_G198A_5	HLA-C03:03	TVSEATHFL	0.9976	0.9852	0.1945	163.21	0.3335	896.26	1/982	1/7748
SNV	Breast	TEAD3_S223P_4	HLA-C03:03	IASPRLRLL	0.9996	0.9777	0.0348	29.12	0.164	34.97	1/982	1/7748
SNV	Breast	TSHZ2_L682V_2	HLA-B07:02	AVANHAPAL	0.9894	0.5271	0.1449	299.48	0.3568	3.78	1/982	1/7748
SNV	Breast	TSHZ2_L682V_9	HLA-C03:03	SALSNGCAV	0.9568	0.9576	0.099	216.28	0.3721	3.78	1/982	1/7748
SNV	Breast	TSHZ2_L682V_2	HLA-C03:03	AVANHAPAL	0.9985	0.99	0.0944	5.2	0.0514	3.78	1/982	1/7748
SNV	Breast	UACA_D282Y_7	HLA-A02:01	NLTHMQYEV	0.9863	0.6401	0.2221	238.89	0.5357	23.86	1/982	1/7748
SNV	Breast	UACA_D282Y_10	HLA-B15:01	QQRNLTHMQY	0.9998	0.9189	0.2855	18.19	0.1341	23.86	1/982	1/7748
SNV	Breast	USP5_K575N_8	HLA-B15:01	YLVIQIKNF	0.9635	0.86	0.4261	398.38	0.4798	109.45	1/982	1/7748
SNV	Breast	ZNF25_A328P_5	HLA-B15:01	YQKSPLTVH	0.9993	0.8306	0.2825	34.85	0.1829	8.12	1/982	1/7748
SNV	Breast	APEX2_D288N_7	HLA-B14:01	DRTLVINTF	0.9958	0.5285	0.3005	103.86	0.0336	26.95	1/982	1/7748
SNV	Breast	MAPK1_E81K_9	HLA-A30:01	KILLRFRHK	0.9879	0.7326	0.0418	486.71	0.173	18.6	1/982	1/7748
SNV	Breast	SLC12A2_F487L_6	HLA-B13:02	REEETLFSV	0.9941	0.5508	0.0571	83.32	0.0435	77.41	1/982	1/7748
SNV	Breast	ACOT4_G74E_3	HLA-C03:04	FAELEPMGL	0.9973	0.9958	0.1825	108.91	0.2834	14.13	1/982	1/7748
SNV	Breast	ADCY3_W1010S_1	HLA-B15:01	SQHLADLADF	0.9996	0.7461	0.4	215.34	0.381	14.3	1/982	1/7748
SNV	Breast	ADH1B_G216A_2	HLA-C03:04	AAAARIIAV	0.9943	0.9931	0.1241	6.99	0.0631	4.75	1/982	1/7748
SNV	Breast	ANK2_S2751F_10	HLA-B15:01	HLAEDRHAVF	0.9998	0.7648	0.5766	76.84	0.2622	3.04	1/982	1/7748
SNV	Breast	ANK2_S2751F_9	HLA-C03:04	LAEDRHAVF	0.9986	0.9771	0.1919	266.93	0.401	3.04	1/982	1/7748
SNV	Breast	AP4E1_H1015D_5	HLA-A02:01	MMDTDSAQL	0.9792	0.5837	0.3157	12.95	0.1798	4.36	1/982	1/7748
SNV	Breast	AP4E1_H1015D_6	HLA-A02:01	HMMDTDSAQL	0.991	0.5064	0.3379	327.38	0.5868	4.36	1/982	1/7748
SNV	Breast	ARHGAP33_S37L_3	HLA-B15:01	RLLAPRGPF	0.9904	0.8264	0.1419	174.33	0.3534	1.4	1/982	1/7748
SNV	Breast	ARHGEF12_L1047V_8	HLA-A02:01	TLLLEDIVV	0.976	0.7633	0.8958	63.75	0.3336	14.04	1/982	1/7748
SNV	Breast	ARHGEF12_L1047V_7	HLA-A02:01	LLLEDIVVL	0.9922	0.6468	0.1881	1.48	0.0199	14.04	1/982	1/7748
SNV	Breast	ARHGEF12_L1047V_6	HLA-A02:01	LLEDIVVLL	0.9949	0.7137	0.2691	2.14	0.0486	14.04	1/982	1/7748
SNV	Breast	ARHGEF12_L1047V_8	HLA-A02:01	TLLLEDIVVL	0.9747	0.6245	0.7719	27.55	0.2445	14.04	1/982	1/7748
SNV	Breast	ARHGEF12_L1047V_7	HLA-A02:01	LLLEDIVVLL	0.9974	0.5951	0.365	13.76	0.1851	14.04	1/982	1/7748
SNV	Breast	ARHGEF12_L1047V_7	HLA-C03:04	LLLEDIVVL	0.9788	0.9906	0.852	220.81	0.3749	14.04	1/982	1/7748
SNV	Breast	ARID1B_R2134T_5	HLA-A02:01	ALAATAIAV	0.9953	0.7376	0.0989	4.9	0.1028	16.69	1/982	1/7748
SNV	Breast	ATG16L2_R25W_3	HLA-A02:01	RLWDRTQKAL	0.9627	0.5728	1.1498	159.08	0.4681	1.61	1/982	1/7748
SNV	Breast	ATP5C1_L121I_1	HLA-C03:04	ITAAGKEVM	0.9977	0.9767	0.2574	436.89	0.4808	200.44	1/982	1/7748
SNV	Breast	B4GALT4_S250C_6	HLA-B15:01	KVNGFCNNY	0.9947	0.8362	0.2913	273.21	0.4157	9.67	1/982	1/7748
SNV	Breast	BBS12_D168N_1	HLA-A02:01	NLIEELHGL	0.9918	0.5647	0.1218	1.42	0.0179	2.62	1/982	1/7748
SNV	Breast	BBS12_D168N_9	HLA-A02:01	FLQVPSDTNL	0.8914	0.7385	0.7602	137.17	0.4428	2.62	1/982	1/7748
SNV	Breast	BMPR2_R933K_1	HLA-C07:02	KRAQRPNSL	0.9761	0.8628	0.1108	9.66	0.047	30.54	1/982	1/7748
SNV	Breast	C6orf226_S16L_2	HLA-A02:01	ALASVTLAQL	0.9881	0.6366	0.365	244.03	0.5392	38.09	1/982	1/7748
SNV	Breast	C6orf226_S16L_6	HLA-B07:02	APASALASV	0.9968	0.6117	0.0251	2.19	0.0365	38.09	1/982	1/7748
SNV	Breast	C6orf226_S16L_11	HLA-B07:02	SPQCSAPASAL	0.9997	0.5154	0.1126	9.48	0.1095	38.09	1/982	1/7748
SNV	Breast	C6orf226_S16L_6	HLA-B07:02	APASALASVTL	0.9999	0.6083	0.1301	17.37	0.1478	38.09	1/982	1/7748
SNV	Breast	C6orf226_S16L_4	HLA-C03:04	ASALASVTL	0.9996	0.9953	0.2016	26.97	0.1594	38.09	1/982	1/7748
SNV	Breast	C6orf226_S16L_1	HLA-C03:04	LASVTLAQL	0.9995	0.9903	0.0592	64.53	0.2287	38.09	1/982	1/7748
SNV	Breast	CARD8_E279Q_2	HLA-B15:01	LQHPARVEPF	0.9999	0.9307	0.4325	123.03	0.3079	8.34	1/982	1/7748
SNV	Breast	CCNA2_E13K_6	HLA-B07:02	GPATRKAGSAL	1	0.5305	0.1032	2.65	0.0459	9.98	1/982	1/7748
SNV	Breast	CCNA2_E13K_3	HLA-C07:02	TRKAGSALL	0.802	0.9328	0.2519	254.3	0.2981	9.98	1/982	1/7748
SNV	Breast	CCNA2_E13K_1	HLA-C03:04	KAGSALLAL	0.9852	0.9821	0.0592	60.24	0.2214	9.98	1/982	1/7748
SNV	Breast	CD180_L464F_1	HLA-A02:01	FLAGLPVL	0.997	0.761	1.6035	84.37	0.3697	10.74	1/982	1/7748
SNV	Breast	CD180_L464F_9	HLA-A02:01	FLDTSNQHF	0.9862	0.5396	0.7275	282.5	0.5629	10.74	1/982	1/7748
SNV	Breast	CD180_L464F_9	HLA-A02:01	FLDTSNQHFL	0.995	0.6183	0.367	10.24	0.1605	10.74	1/982	1/7748
SNV	Breast	CD180_L464F_1	HLA-A02:01	FLAGLPVLRHL	0.9966	0.6809	1.7836	118.61	0.4179	10.74	1/982	1/7748
SNV	Breast	CD180_L464F_2	HLA-C07:02	HFLAGLPVL	0.5536	0.9913	0.3508	128.9	0.2209	10.74	1/982	1/7748
SNV	Breast	CDC40_S11F_9	HLA-B15:01	AAIAALAAF	0.9979	0.8757	0.0171	7.88	0.0759	14.64	1/982	1/7748
SNV	Breast	CDC40_S11F_8	HLA-B15:01	AIAALAAFY	0.9962	0.8895	0.1864	146.52	0.3307	14.64	1/982	1/7748
SNV	Breast	CDC40_S11F_9	HLA-B15:01	AAIAALAAFY	0.9992	0.9125	0.5683	456.37	0.5031	14.64	1/982	1/7748
SNV	Breast	CDC40_S11F_9	HLA-C03:04	AAIAALAAF	0.9972	0.9876	0.0691	7.57	0.0665	14.64	1/982	1/7748
SNV	Breast	CDCA8_E226Q_6	HLA-C03:04	LADSKQIFL	0.9976	0.9452	0.0734	297.37	0.4185	12.62	1/982	1/7748
SNV	Breast	CHD9_E715Q_6	HLA-A02:01	MIDTEQFFV	0.9961	0.5362	0.1304	22.5	0.2274	4.52	1/982	1/7748
SNV	Breast	CHD9_E715Q_7	HLA-A02:01	VMIDTEQFFV	0.9991	0.5519	0.0914	19.99	0.2174	4.52	1/982	1/7748
SNV	Breast	CHD9_E715Q_8	HLA-B15:01	GVMIDTEQF	0.9901	0.9792	0.5336	452.61	0.5016	4.52	1/982	1/7748
SNV	Breast	CHD9_E715Q_7	HLA-B15:01	VMIDTEQFF	0.9979	0.9806	0.0636	7.82	0.0751	4.52	1/982	1/7748
SNV	Breast	CLK3_E424K_6	HLA-C07:02	LRFLHKNQL	0.8951	0.9625	0.0379	13.37	0.0604	4.44	1/982	1/7748
SNV	Breast	CLPTM1L_D500N_4	HLA-C07:02	FRDNVVFL	0.9985	0.8436	0.4666	271.93	0.3075	83.19	1/982	1/7748
SNV	Breast	CLPTM1L_D500N_4	HLA-C07:02	FRDNVVFLV	0.9525	0.9306	0.2011	244.38	0.2935	83.19	1/982	1/7748
SNV	Breast	CPD_E1343K_8	HLA-B15:01	RLRQHHDKY	0.9964	0.7309	0.1353	4.25	0.0432	35.22	1/982	1/7748
SNV	Breast	CPD_E1343K_1	HLA-C07:02	KYEDEIRMM	0.9612	0.9656	0.172	163.06	0.2463	35.22	1/982	1/7748
SNV	Breast	CR2_D810H_7	HLA-B15:01	SAYSHNHIVY	0.9995	0.7431	0.2754	32.21	0.176	14.45	1/982	1/7748
SNV	Breast	CR2_D810H_6	HLA-C07:02	AYSHNHIVY	0.5469	0.8298	0.1136	470.71	0.3885	14.45	1/982	1/7748
SNV	Breast	CR2_D810H_5	HLA-C07:02	YSHNHIVYV	0.8851	0.7814	1.9497	322.92	0.3329	14.45	1/982	1/7748
SNV	Breast	CR2_D810H_7	HLA-C03:04	SAYSHNHIV	0.9841	0.9881	0.0191	10.52	0.0859	14.45	1/982	1/7748
SNV	Breast	CR2_D810H_5	HLA-C03:04	YSHNHIVYV	0.993	0.9798	0.0262	17.32	0.1262	14.45	1/982	1/7748
SNV	Breast	CXCL6_S15L_7	HLA-C07:02	ARVPGPLGSL	0.9977	0.9619	0.072	238.58	0.2906	1.04	1/982	1/7748
SNV	Breast	CXCL6_S15L_9	HLA-C03:04	RAARVPGPL	0.9841	0.9899	0.5345	131.87	0.3043	1.04	1/982	1/7748
SNV	Breast	CXCL6_S15L_6	HLA-C03:04	RVPGPLGSL	0.9821	0.9911	0.1971	146.27	0.3185	1.04	1/982	1/7748
SNV	Breast	CYP4B1_I485M_4	HLA-A02:01	RLPMKMPQL	0.9585	0.624	0.7688	378.4	0.614	39.27	1/982	1/7748
SNV	Breast	CYP4B1_I485M_9	HLA-C03:04	SLDPSRLPM	0.9966	0.9721	0.1535	380.37	0.4584	39.27	1/982	1/7748
SNV	Breast	DARS_E136Q_2	HLA-B15:01	VQLHVQKIY	0.9988	0.5531	0.1275	11.61	0.1058	49.72	1/982	1/7748
SNV	Breast	DCLK1_E388Q_9	HLA-B15:01	FQIPATITQRY	1	0.9533	0.3275	99.83	0.2863	12.44	1/982	1/7748
SNV	Breast	DCLK1_E388Q_1	HLA-C07:02	QRYKVGRTI	0.9634	0.9149	0.2351	31.89	0.1014	12.44	1/982	1/7748
SNV	Breast	DNAH5_A3812V_5	HLA-B15:01	QINSVREEY	0.9997	0.8632	0.3175	64.37	0.2452	8.6	1/982	1/7748
SNV	Breast	DNAH5_A3812V_6	HLA-B15:01	VQINSVREEY	1	0.8083	0.1781	4.78	0.0497	8.6	1/982	1/7748
SNV	Breast	DOCK4_R1698T_4	HLA-C03:04	SSATASPLL	0.9986	0.9871	0.3596	386.09	0.4608	2.64	1/982	1/7748
SNV	Breast	DOPEY2_E88Q_7	HLA-C03:04	KALETYQII	0.9869	0.9861	0.4783	328.14	0.4345	33.38	1/982	1/7748
SNV	Breast	EHD2_H372Y_9	HLA-B15:01	MAHDFTKFY	0.9971	0.9208	0.0756	35.35	0.1841	76.35	1/982	1/7748
SNV	Breast	EHD2_H372Y_9	HLA-C07:02	MAHDFTKFY	0.7771	0.9466	1.2043	493.3	0.3954	76.35	1/982	1/7748
SNV	Breast	EIF2AK4_E460Q_3	HLA-C07:02	VFQQTRVRF	0.6272	0.9605	0.2865	296.39	0.3203	12.65	1/982	1/7748
SNV	Breast	F8_S128F_3	HLA-B15:01	KAFEGAEY	0.9994	0.9763	1.0529	319.84	0.4425	4.53	1/982	1/7748
SNV	Breast	FZD7_E132K_7	HLA-B07:02	RARQGCKAL	0.9986	0.5121	0.0568	79.07	0.2447	26.8	1/982	1/7748
SNV	Breast	GALNT14_D293H_2	HLA-C07:02	FHYLGKYDM	0.6118	0.749	0.5784	230.9	0.2868	4.12	1/982	1/7748
SNV	Breast	GANAB_F604L_2	HLA-B15:01	ALFAGSQRF	0.9991	0.931	0.0695	1.78	0.0091	439.26	1/982	1/7748
SNV	Breast	GANAB_F604L_9	HLA-B07:02	RPFVLARAL	0.9991	0.5109	0.0043	1.35	0.0152	439.26	1/982	1/7748
SNV	Breast	GANAB_F604L_2	HLA-C07:02	ALFAGSQRF	0.6922	0.9747	1.5602	468.05	0.3877	439.26	1/982	1/7748
SNV	Breast	GARS_E590K_6	HLA-C07:02	MYTVFKHTF	0.5449	0.8813	0.1528	31.16	0.0999	96.68	1/982	1/7748
SNV	Breast	GBF1_E1051K_6	HLA-A02:01	AMIEVKDFV	0.9985	0.5006	0.0602	3	0.0657	69.87	1/982	1/7748
SNV	Breast	GFRA2_S383C_9	HLA-B07:02	APRVEKTPCL	0.9988	0.5829	0.1032	6.04	0.0797	1.64	1/982	1/7748
SNV	Breast	GLOD5_D39H_3	HLA-A02:01	RLHHIVMTV	0.9957	0.719	0.0225	3.87	0.0796	3.54	1/982	1/7748
SNV	Breast	GLOD5_D39H_5	HLA-C07:02	IRRLHHIVM	0.9539	0.8266	0.1575	61.99	0.1519	3.54	1/982	1/7748
SNV	Breast	HDAC10_L585V_2	HLA-B07:02	GVQGPHAAL	0.994	0.7674	0.3031	175.66	0.3098	2.76	1/982	1/7748
SNV	Breast	HDAC10_L585V_9	HLA-C03:04	VALGPGHGV	0.9613	0.9927	0.2614	123.68	0.2966	2.76	1/982	1/7748
SNV	Breast	HDAC10_L585V_2	HLA-C03:04	GVQGPHAAL	0.9969	0.9822	0.3596	192.29	0.3559	2.76	1/982	1/7748
SNV	Breast	HEATR5A_S1600T_10	HLA-A02:01	ALLDVPWPRT	0.9787	0.7073	1.0335	244.06	0.5392	7.2	1/982	1/7748
SNV	Breast	HEATR5A_S1600T_6	HLA-B07:02	VPWPRTKI	0.999	0.5782	0.2998	370.26	0.3755	7.2	1/982	1/7748
SNV	Breast	HERC1_M3191I_9	HLA-A02:01	VLLARTMVI	0.9687	0.6301	0.434	362.96	0.6048	8.06	1/982	1/7748
SNV	Breast	HERC1_M3191I_6	HLA-C07:02	ARTMVIRAL	0.8869	0.9419	0.1925	28.43	0.095	8.06	1/982	1/7748
SNV	Breast	HERC1_M3191I_3	HLA-C03:04	MVIRALSLL	0.9974	0.9865	0.4955	450.25	0.4857	8.06	1/982	1/7748
SNV	Breast	HHAT_L309V_8	HLA-A02:01	VLFGVPAV	0.9952	0.7514	1.3845	94.18	0.3838	12.82	1/982	1/7748
SNV	Breast	HHAT_L309V_9	HLA-A02:01	LVLFGVPAV	0.9708	0.6186	0.1777	34.42	0.2654	12.82	1/982	1/7748
SNV	Breast	HHAT_L309V_8	HLA-A02:01	VLFGVPAVL	0.9746	0.7904	0.2609	7.48	0.1348	12.82	1/982	1/7748
SNV	Breast	HHAT_L309V_10	HLA-A02:01	YLVLFGVPAV	0.9939	0.7119	0.1055	15.81	0.1974	12.82	1/982	1/7748
SNV	Breast	HHAT_L309V_8	HLA-A02:01	VLFGVPAVLM	0.9822	0.7804	0.7225	371.41	0.6099	12.82	1/982	1/7748
SNV	Breast	HHAT_L309V_8	HLA-C03:04	VLFGVPAVL	0.9542	0.9946	0.1739	15.23	0.1136	12.82	1/982	1/7748
SNV	Breast	HID1_S62L_5	HLA-C07:02	VREELPSNL	0.8804	0.9652	0.2234	141.05	0.2306	81.73	1/982	1/7748
SNV	Breast	HIVEP1_E1290Q_2	HLA-B15:01	IQHSSTESSF	0.9998	0.5287	0.0933	8.89	0.0853	9.31	1/982	1/7748
SNV	Breast	ING1_E226Q_8	HLA-C03:04	RALIRSQQL	0.9645	0.9707	0.3025	116.46	0.2903	18.69	1/982	1/7748
SNV	Breast	INO80_S1008C_7	HLA-A02:01	LLTELPCFL	0.9878	0.6343	0.1273	117.43	0.4162	12.09	1/982	1/7748
SNV	Breast	IQCD_E396Q_8	HLA-C07:02	KRMEAEQQM	0.9819	0.958	0.0249	41.66	0.1187	1.57	1/982	1/7748
SNV	Breast	IRF8_S55Y_1	HLA-B15:01	YIFKAWAVF	0.996	0.9265	0.0171	236.58	0.3933	50.33	1/982	1/7748
SNV	Breast	ITGA6_D234N_5	HLA-A02:01	NIFENGPYEV	0.9782	0.5994	0.797	17.71	0.2071	42.23	1/982	1/7748
SNV	Breast	ITIH6_S489C_6	HLA-A02:01	GLVGACPWAV	0.99	0.8908	0.1304	30.64	0.254	4.09	1/982	1/7748
SNV	Breast	ITM2A_R228G_4	HLA-C07:02	FRLGRRDLL	0.9133	0.9087	0.0926	10.59	0.0515	93.42	1/982	1/7748
SNV	Breast	ITM2A_R228G_1	HLA-C07:02	GRRDLLLGF	0.8758	0.9096	0.1325	47.57	0.1283	93.42	1/982	1/7748
SNV	Breast	KANK1_D1259N_8	HLA-A02:01	GLLACGANV	0.9883	0.7924	0.3157	130.39	0.4341	9.87	1/982	1/7748
SNV	Breast	KAT6A_S1253F_9	HLA-B15:01	ASSEVPAAF	0.9951	0.8581	0.0636	12.61	0.1107	16.67	1/982	1/7748
SNV	Breast	KAT6A_S1253F_9	HLA-C03:04	ASSEVPAAF	0.997	0.9759	0.0691	45.73	0.1947	16.67	1/982	1/7748
SNV	Breast	KIAA0391_S357F_1	HLA-B15:01	FIQLSPEEY	0.9966	0.8957	0.2325	441.23	0.4971	1.49	1/982	1/7748
SNV	Breast	KIAA1671_S993F_8	HLA-B15:01	ALRKPQLFHY	0.9999	0.6967	0.4444	56.94	0.2319	11.53	1/982	1/7748
SNV	Breast	KIAA1671_S993F_7	HLA-C07:02	LRKPQLFHY	0.9618	0.7894	0.0226	325.36	0.334	11.53	1/982	1/7748
SNV	Breast	KIT_S464L_4	HLA-B15:01	TLNLSGPPF	0.9869	0.7532	0.1781	161.61	0.3435	4.97	1/982	1/7748
SNV	Breast	KLK11_E202Q_2	HLA-B15:01	IQHQKCENAY	0.9999	0.6084	0.2233	15.14	0.1215	43.03	1/982	1/7748
SNV	Breast	LAMA4_L1399V_8	HLA-B15:01	TEKVHTSVY	0.9879	0.9277	0.3566	273.8	0.4161	18.42	1/982	1/7748
SNV	Breast	LAMA5_P2467L_8	HLA-A02:01	SLDGARTLL	0.8543	0.5016	0.5649	96.41	0.3868	31.61	1/982	1/7748
SNV	Breast	LAMA5_P2467L_1	HLA-B15:01	LLLQRMQTF	0.9787	0.9539	0.1275	291.82	0.4269	31.61	1/982	1/7748
SNV	Breast	LAMA5_P2467L_9	HLA-C03:04	ASLDGARTL	0.9995	0.9878	0.0561	7	0.0631	31.61	1/982	1/7748
SNV	Breast	LRRC47_G302R_2	HLA-C07:02	VRDAGRLLL	0.9334	0.9567	0.0756	15.93	0.0681	40.22	1/982	1/7748
SNV	Breast	LSM1_R33K_1	HLA-C03:04	KSIDQFANL	0.9994	0.9808	0.1144	55.62	0.213	40.66	1/982	1/7748
SNV	Breast	LTA4H_E224Q_2	HLA-B15:01	SQKEQVEKSAY	1	0.8245	0.2634	17.45	0.1311	37.37	1/982	1/7748
SNV	Breast	MAP1A_D774H_8	HLA-C07:02	RFHTSTYHL	0.6316	0.8814	0.2671	71.13	0.1632	5.82	1/982	1/7748
SNV	Breast	MAP4K4_D215N_1	HLA-A02:01	NLWSCGITA	0.968	0.5856	0.2775	342.95	0.5943	26.37	1/982	1/7748
SNV	Breast	MAP4K4_D215N_8	HLA-C03:04	ATYDYRSNL	0.9955	0.9903	0.585	33.43	0.1723	26.37	1/982	1/7748
SNV	Breast	MAPK8IP3_P1221L_8	HLA-B15:01	RAASSFILY	0.9971	0.9199	0.0902	8.96	0.0859	6.38	1/982	1/7748
SNV	Breast	MARK4_E51K_1	HLA-B15:01	KEQPHVGNY	0.9658	0.7884	0.3693	77.45	0.2629	33.97	1/982	1/7748
SNV	Breast	MASTL_D559Y_1	HLA-C07:02	YRASKNISM	0.9906	0.9105	0.0055	2.12	0.0063	5.57	1/982	1/7748
SNV	Breast	MBTPS2_V146L_2	HLA-A02:01	VLVPGINLPV	0.9918	0.7996	0.2355	39.13	0.2779	9.13	1/982	1/7748
SNV	Breast	MLH3_M1121I_1	HLA-C07:02	IRQDNRDTV	0.674	0.9295	0.5694	386.56	0.3595	3.31	1/982	1/7748
SNV	Breast	MSH6_E993K_8	HLA-B15:01	TTRNLPEKY	0.9876	0.9064	0.9166	216.68	0.3818	20.13	1/982	1/7748
SNV	Breast	MYO9A_Q995E_8	HLA-A02:01	NLNPDNYEV	0.995	0.6435	0.2808	2.37	0.0532	3.09	1/982	1/7748
SNV	Breast	MYO9A_Q995E_2	HLA-B15:01	YEVGKTMVF	0.9667	0.6222	0.348	140.97	0.3257	3.09	1/982	1/7748
SNV	Breast	NAB2_G303A_7	HLA-C07:02	KYSIIYARF	0.5226	0.8129	1.2628	150.76	0.2378	34.64	1/982	1/7748
SNV	Breast	NCAPD3_S894L_9	HLA-C03:04	SADADHSPL	0.9989	0.9884	0.0912	79.99	0.2513	9.58	1/982	1/7748
SNV	Breast	NCAPH_E721K_4	HLA-C03:04	LANKKNLKL	0.9967	0.9895	0.0767	101.16	0.2757	5.34	1/982	1/7748
SNV	Breast	NCOA5_E195K_6	HLA-C07:02	RRFDAKRPV	0.7862	0.94	0.1528	192.12	0.2652	78.67	1/982	1/7748
SNV	Breast	NFATC2_P117A_1	HLA-C03:04	ASHELIQAV	0.9931	0.9983	0.0954	414.72	0.4724	17.13	1/982	1/7748
SNV	Breast	NINL_E1122K_7	HLA-B15:01	AQRKEIKVL	0.9969	0.8609	0.6244	55.51	0.2292	4.06	1/982	1/7748
SNV	Breast	NSMAF_E745Q_2	HLA-B15:01	AQMPGTKRH	0.9907	0.9402	0.7049	233.43	0.3915	14.32	1/982	1/7748
SNV	Breast	NSMAF_E745Q_2	HLA-B15:01	AQMPGTKRHHF	0.9999	0.9312	0.2485	42.53	0.2004	14.32	1/982	1/7748
SNV	Breast	PAICS_E174Q_8	HLA-C03:04	HATQAIFQI	0.954	0.9749	0.3766	386.15	0.4608	37.45	1/982	1/7748
SNV	Breast	PCSK5_E829K_8	HLA-C07:02	YYFDHSSKNGY	0.9945	0.6246	0.2402	380.18	0.357	2.33	1/982	1/7748
SNV	Breast	PDE4B_R375T_7	HLA-C03:04	YAIFQETDL	0.9996	0.9932	0.1008	12.81	0.0979	16.99	1/982	1/7748
SNV	Breast	PDE4DIP_S1660L_9	HLA-C03:04	AVLSSKPSL	0.9965	0.9867	0.7094	271.77	0.4039	6.87	1/982	1/7748
SNV	Breast	PICALM_D538N_3	HLA-C03:04	VSNDLDSSL	0.9992	0.984	0.2437	80.32	0.2517	85.09	1/982	1/7748
SNV	Breast	PIH1D1_G104V_3	HLA-A02:01	SLVEPHAEL	0.9871	0.7186	0.4984	4.12	0.0883	51.26	1/982	1/7748
SNV	Breast	PIH1D1_G104V_3	HLA-C03:04	SLVEPHAEL	0.9938	0.9953	0.131	16.09	0.1191	51.26	1/982	1/7748
SNV	Breast	PIK3CA_E453K_3	HLA-A02:01	GLKDLLNPI	0.9672	0.5423	0.5138	157.89	0.4669	9.55	5/982	6/7748
SNV	Breast	PIK3CA_E81K_1	HLA-C07:02	KFFDETRRL	0.7303	0.9447	0.2626	13.38	0.0604	9.55	2/982	3/7748
SNV	Breast	PJA1_E452Q_5	HLA-A02:01	SLQEQQASL	0.9601	0.7932	0.488	12.39	0.1758	38.15	1/982	1/7748
SNV	Breast	PLXNA1_S465L_9	HLA-C07:02	IRKILVDLL	0.8214	0.9028	0.3186	353.63	0.3463	16.81	1/982	1/7748
SNV	Breast	PPP2R5C_R188K_1	HLA-A02:01	KIYGKFLGL	0.9872	0.7711	0.3185	18.22	0.2095	25.37	1/982	1/7748
SNV	Breast	PPP2R5C_R188K_4	HLA-B15:01	TLHKIYGKF	0.8838	0.8186	0.1721	367	0.4658	25.37	1/982	1/7748
SNV	Breast	PRR14_R22Q_7	HLA-C07:02	CRQPLTQAL	0.8104	0.9244	0.0447	225.45	0.284	33.22	1/982	1/7748
SNV	Breast	PRR36_S308F_9	HLA-B15:01	SSSPLATPF	0.9972	0.8855	0.0334	295.53	0.429	27.37	1/982	1/7748
SNV	Breast	PRR36_S308F_3	HLA-B07:02	TPFPSGTKA	0.9938	0.6098	0.1286	233.04	0.3347	27.37	1/982	1/7748
SNV	Breast	PRR36_S308F_9	HLA-C03:04	SSSPLATPF	0.9978	0.9856	0.0912	322.76	0.4318	27.37	1/982	1/7748
SNV	Breast	PTPN12_S275F_1	HLA-B15:01	FAVQTKEQY	0.996	0.8061	0.1735	76.15	0.2614	31.09	1/982	1/7748
SNV	Breast	PTPN12_S275F_7	HLA-C07:02	MRTQRHFAV	0.9323	0.9569	0.34	128.43	0.2205	31.09	1/982	1/7748
SNV	Breast	RAB3GAP2_S1067F_4	HLA-C07:02	KRFFAATYL	0.9277	0.946	0.0133	5.69	0.0256	15.6	1/982	1/7748
SNV	Breast	RAB3GAP2_S1067F_3	HLA-C07:02	RFFAATYLM	0.7564	0.9549	0.5283	15.06	0.0656	15.6	1/982	1/7748
SNV	Breast	RAB3IP_L460F_9	HLA-B15:01	QMFWEVMQF	0.9965	0.9255	0.0211	393.08	0.4775	5.66	1/982	1/7748
SNV	Breast	RASSF10_S208L_9	HLA-C03:04	SSTSSSTAL	0.9983	0.9914	0.1027	91.42	0.2652	7.05	1/982	1/7748
SNV	Breast	RBM15B_S712L_3	HLA-A02:01	NLLEYAQTL	0.9888	0.6329	0.2625	2.54	0.0561	34.13	1/982	1/7748
SNV	Breast	RMND5A_E52K_1	HLA-A02:01	KLSGTLSLV	0.9958	0.6659	0.026	11.87	0.1723	32.79	1/982	1/7748
SNV	Breast	RMND5A_S248L_9	HLA-A02:01	YLRQGIENL	0.9524	0.5355	0.4681	7.63	0.1365	32.79	1/982	1/7748
SNV	Breast	RMND5A_S248L_7	HLA-B15:01	RQGIENLPY	0.9993	0.8057	0.0968	20.38	0.1425	32.79	1/982	1/7748
SNV	Breast	RMND5A_S248L_9	HLA-C03:04	YLRQGIENL	0.9493	0.9938	0.7512	236.73	0.3844	32.79	1/982	1/7748
SNV	Breast	RNF123_S240C_3	HLA-B15:01	SLCFKESVAF	0.9986	0.9602	0.9808	195.37	0.3683	8.95	1/982	1/7748
SNV	Breast	RNF123_S240C_9	HLA-C07:02	AYFPAISLCF	0.9331	0.9174	0.3121	326.96	0.3347	8.95	1/982	1/7748
SNV	Breast	RNF167_E306Q_5	HLA-B07:02	HPASQRTPL	0.9997	0.5097	0.0006	1.22	0.0099	118.45	1/982	1/7748
SNV	Breast	RNF213_P2560A_3	HLA-B15:01	SIALRQLVY	0.9978	0.7445	0.352	100.21	0.2867	28.94	1/982	1/7748
SNV	Breast	ROR2_S224L_7	HLA-B15:01	HLSDQCLQF	0.9965	0.7347	0.1113	401.3	0.481	22.8	1/982	1/7748
SNV	Breast	RRM1_E188Q_4	HLA-C03:04	AAIQTYNLL	0.9996	0.9829	0.0624	8.17	0.0699	42.72	1/982	1/7748
SNV	Breast	SEC23A_D691N_5	HLA-B07:02	APVDNAQEI	0.9554	0.5355	0.1914	40.48	0.1926	16.36	1/982	1/7748
SNV	Breast	SEC24D_E961K_4	HLA-B15:01	LLPKVGNPY	0.9984	0.786	0.1113	16.68	0.1278	36.36	1/982	1/7748
SNV	Breast	SEC24D_E961K_5	HLA-B15:01	TLLPKVGNPY	0.9992	0.7279	0.3175	436.93	0.4955	36.36	1/982	1/7748
SNV	Breast	SEL1L3_E906Q_9	HLA-A02:01	VLAAETGIQV	0.994	0.5721	0.5374	33.07	0.2615	34.88	1/982	1/7748
SNV	Breast	SEL1L3_E906Q_8	HLA-C03:04	LAAETGIQV	0.9592	0.9913	0.0691	10.06	0.0828	34.88	1/982	1/7748
SNV	Breast	SENP6_Q515E_3	HLA-C07:02	VYEKLSIQL	0.9346	0.9235	0.1356	451.03	0.3822	15.5	1/982	1/7748
SNV	Breast	SFR1_E239K_6	HLA-C07:02	HYNRSKEEF	0.6296	0.8527	0.172	248.68	0.2955	10.22	1/982	1/7748
SNV	Breast	SLC39A14_S31L_2	HLA-A02:01	ALSLGAPAI	0.9271	0.502	0.2931	148.62	0.4565	16.93	1/982	1/7748
SNV	Breast	SLC39A14_S31L_9	HLA-C03:04	RTTPEAHAL	0.9977	0.9923	0.1919	26.88	0.1592	16.93	1/982	1/7748
SNV	Breast	SLTM_H866Y_10	HLA-B15:01	IIHDRPDITY	0.9998	0.7913	0.501	16.59	0.1274	24.26	1/982	1/7748
SNV	Breast	SLTM_H866Y_1	HLA-B07:02	YPRHPREAG	0.9928	0.5338	0.1449	470.62	0.3966	24.26	1/982	1/7748
SNV	Breast	SMARCA2_P127L_8	HLA-A02:01	YMSPHPSLL	0.9952	0.6396	0.0245	2.09	0.0474	74.57	1/982	1/7748
SNV	Breast	SMARCA2_P127L_2	HLA-A02:01	SLLGAPEHV	0.996	0.8584	0.1273	1.55	0.0281	74.57	1/982	1/7748
SNV	Breast	SMARCA2_P127L_8	HLA-B15:01	YMSPHPSLL	0.9904	0.9322	0.139	489.08	0.516	74.57	1/982	1/7748
SNV	Breast	SMARCA2_P127L_9	HLA-C07:02	GYMSPHPSL	0.6174	0.9736	0.206	10.67	0.0518	74.57	1/982	1/7748
SNV	Breast	SMARCA2_P127L_8	HLA-C07:02	YMSPHPSLL	0.91	0.9705	0.0168	14.84	0.065	74.57	1/982	1/7748
SNV	Breast	SMARCA2_P127L_8	HLA-C03:04	YMSPHPSLL	0.999	0.9884	0.0077	3.81	0.0382	74.57	1/982	1/7748
SNV	Breast	SPDEF_D97H_1	HLA-C03:04	HSQAPAGSL	0.9987	0.9909	0.1885	433.67	0.4796	624.39	1/982	1/7748
SNV	Breast	SPG7_G518V_11	HLA-A02:01	RLAELTPGFSV	0.9995	0.7097	0.6755	47.5	0.2968	15.1	1/982	1/7748
SNV	Breast	SPG7_G518V_3	HLA-C03:04	FSVADIANI	0.9982	0.971	0.4136	264.51	0.3996	15.1	1/982	1/7748
SNV	Breast	SPTBN2_S1463L_2	HLA-B15:01	TLRAVEEKF	0.9959	0.9598	0.2783	59.08	0.2359	5.87	1/982	1/7748
SNV	Breast	SRRT_F152L_2	HLA-A02:01	TLKEFLLSL	0.9738	0.6079	0.2758	12.29	0.1751	82.7	1/982	1/7748
SNV	Breast	STAT6_S58L_3	HLA-A02:01	LLLDTVQHL	0.9986	0.5818	0.0484	1.49	0.02	51.01	1/982	1/7748
SNV	Breast	STAT6_S58L_3	HLA-C03:04	LLLDTVQHL	0.9917	0.9884	0.2437	490.59	0.4996	51.01	1/982	1/7748
SNV	Breast	STUB1_E174K_6	HLA-C03:04	IAAERKREL	0.9991	0.9814	0.0912	44.75	0.1931	108.56	1/982	1/7748
SNV	Breast	SUPT16H_G99A_2	HLA-C03:04	NAAPAITLL	0.9998	0.927	0.0179	2.52	0.0264	52.15	1/982	1/7748
SNV	Breast	SVEP1_E3143K_6	HLA-C03:04	HTYESKVKL	0.9984	0.9794	0.1511	8.72	0.0738	4.58	1/982	1/7748
SNV	Breast	SYNE1_E7755Q_7	HLA-A02:01	ILNERVQLL	0.9958	0.5663	0.4938	2.07	0.0468	3.7	1/982	2/7748
SNV	Breast	SYNE1_E7755Q_7	HLA-C07:02	ILNERVQLL	0.8308	0.8829	0.4417	345.46	0.3429	3.7	1/982	1/7748
SNV	Breast	SZT2_Q1213E_10	HLA-B07:02	APRDLIFRTEF	0.9999	0.6321	0.5687	6.08	0.08	8.15	1/982	1/7748
SNV	Breast	TDG_E339Q_2	HLA-B15:01	YQAAYGGAY	0.9993	0.7827	0.0036	1.48	0.0062	11.12	1/982	1/7748
SNV	Breast	TECPR2_S174F_7	HLA-A02:01	VLEEPSFIV	0.9861	0.792	0.4466	18.26	0.2097	10.18	1/982	1/7748
SNV	Breast	TECPR2_S449L_2	HLA-A02:01	SLEDFDQEL	0.9541	0.7975	0.7275	13.43	0.183	10.18	1/982	1/7748
SNV	Breast	TECPR2_S449L_2	HLA-A02:01	SLEDFDQELVV	0.9565	0.823	0.9551	79.39	0.3618	10.18	1/982	1/7748
SNV	Breast	TECPR2_S449L_9	HLA-B15:01	SQRFNAISL	0.999	0.8114	0.2253	113.21	0.2979	10.18	1/982	1/7748
SNV	Breast	TMEM242_S13F_9	HLA-B15:01	GAATGQPAF	0.9733	0.7917	0.4557	453.13	0.5018	15.16	1/982	1/7748
SNV	Breast	TMEM242_S13F_9	HLA-C03:04	GAATGQPAF	0.9814	0.9746	0.5152	156.86	0.328	15.16	1/982	1/7748
SNV	Breast	TNFRSF1A_P277A_4	HLA-B07:02	SPTAGFTPTL	0.9965	0.5171	0.0595	2.84	0.0499	120.99	1/982	1/7748
SNV	Breast	TRAPPC2B_M81I_7	HLA-B15:01	FVTAGHIRF	0.9038	0.8934	0.348	334.85	0.4503	14.5	1/982	1/7748
SNV	Breast	TRAPPC2B_M81I_7	HLA-C03:04	FVTAGHIRF	0.9734	0.9833	0.6581	132.49	0.3049	14.5	1/982	1/7748
SNV	Breast	TRIM24_L1001V_6	HLA-C07:02	YFEELVKNL	0.9329	0.9416	0.2455	114.79	0.2084	11.97	1/982	1/7748
SNV	Breast	TRMT61A_S184L_6	HLA-A02:01	FLDIPLPWEA	0.9974	0.764	0.6095	8.88	0.1492	18.42	1/982	1/7748
SNV	Breast	TTYH2_E113K_1	HLA-C03:04	KTNDGAYQL	0.9981	0.9923	0.2326	42.68	0.1896	4.48	1/982	1/7748
SNV	Breast	UBE3B_I89M_2	HLA-B15:01	RMKEDNERF	0.9964	0.9283	0.1735	2.71	0.0236	13.06	1/982	1/7748
SNV	Breast	UBR2_E1013D_3	HLA-C03:04	VADTEGTIM	0.9966	0.9892	0.0954	245.68	0.3895	23.63	1/982	1/7748
SNV	Breast	UBR4_L3053V_8	HLA-C03:04	SALNEVHVV	0.992	0.986	0.348	129.26	0.3015	16.69	1/982	1/7748
SNV	Breast	UCHL3_F122L_2	HLA-A02:01	KLLEESVSM	0.9943	0.8376	0.3414	2.06	0.0467	12.47	1/982	1/7748
SNV	Breast	UCHL3_F122L_2	HLA-B15:01	KLLEESVSM	0.9971	0.9804	0.352	133.56	0.3186	12.47	1/982	1/7748
SNV	Breast	UCHL3_F122L_2	HLA-C03:04	KLLEESVSM	0.9081	0.9945	0.9324	320.76	0.4308	12.47	1/982	1/7748
SNV	Breast	USP12_D86H_8	HLA-A02:01	SLLTCLAHL	0.9785	0.7484	0.0464	474.43	0.6639	14.41	1/982	1/7748
SNV	Breast	USP45_R701K_1	HLA-C07:02	KHVDFPLML	0.977	0.9191	0.0862	35.75	0.1088	3.11	1/982	1/7748
SNV	Breast	USP47_M27I_5	HLA-C07:02	IFDEIKKKF	0.9722	0.8675	0.1325	104.08	0.1981	18.37	1/982	1/7748
SNV	Breast	VIM_E136Q_7	HLA-A02:01	ILLAELQQL	0.9964	0.7836	0.2414	2.46	0.0548	595.27	1/982	1/7748
SNV	Breast	VNN2_S342F_3	HLA-B15:01	FIFRDGFNF	0.9913	0.8919	0.1451	179.41	0.3572	5.8	1/982	1/7748
SNV	Breast	VNN2_S342F_1	HLA-C07:02	FRDGFNFTEL	0.9955	0.9761	0.1108	370.31	0.3531	5.8	1/982	1/7748
SNV	Breast	VPS13A_P1902S_2	HLA-C03:04	ISMAKSYVL	0.9998	0.9844	0.4136	17.97	0.1292	2.73	1/982	1/7748
SNV	Breast	VWA2_S84N_5	HLA-A02:01	GLDINPERV	0.9939	0.7254	0.8186	26.63	0.2416	21.42	1/982	1/7748
SNV	Breast	VWA5A_H605Y_1	HLA-C07:02	YRDVPRPIL	0.983	0.8936	0.0466	9.64	0.0469	6.54	1/982	2/7748
SNV	Breast	VWA5A_H605Y_1	HLA-C07:02	YRDVPRPILL	0.998	0.8759	0.3576	8.56	0.0402	6.54	1/982	2/7748
SNV	Breast	WDR27_S491L_2	HLA-A02:01	ALAPHVTMF	0.8771	0.7496	1.2099	434.79	0.6446	1.82	1/982	1/7748
SNV	Breast	WDR27_S491L_2	HLA-B15:01	ALAPHVTMF	0.9994	0.9252	0.0248	2.04	0.0131	1.82	1/982	1/7748
SNV	Breast	WDR27_S491L_3	HLA-B15:01	YALAPHVTMF	0.9988	0.9167	1.8116	437.36	0.4956	1.82	1/982	1/7748
SNV	Breast	WDR27_S491L_9	HLA-B07:02	KVRSSGYAL	0.998	0.611	0.0717	3.79	0.0624	1.82	1/982	1/7748
SNV	Breast	WDR27_S491L_3	HLA-C07:02	YALAPHVTM	0.9959	0.9811	0.5427	99.95	0.1942	1.82	1/982	1/7748
SNV	Breast	WDR27_S491L_2	HLA-C07:02	ALAPHVTMF	0.845	0.9874	0.3945	93.39	0.1876	1.82	1/982	1/7748
SNV	Breast	WDR27_S491L_3	HLA-C03:04	YALAPHVTM	0.9998	0.9939	0.0032	1.15	0.0031	1.82	1/982	1/7748
SNV	Breast	WDR27_S491L_2	HLA-C03:04	ALAPHVTMF	0.9356	0.9916	0.5296	168.12	0.3375	1.82	1/982	1/7748
SNV	Breast	WDR27_S491L_3	HLA-C03:04	YALAPHVTMF	0.9998	0.9909	0.5222	149.72	0.3217	1.82	1/982	1/7748
SNV	Breast	WDR3_Q561E_7	HLA-C03:04	VSYSPNEKL	0.9994	0.9907	0.0752	103.71	0.2783	12.97	1/982	1/7748
SNV	Breast	ZBED1_S57F_1	HLA-B15:01	FGNTSNLSY	0.9643	0.8395	0.2386	317.81	0.4414	44.34	1/982	1/7748
SNV	Breast	ZBED1_S57F_4	HLA-C03:04	IAYFGNTSNL	0.9997	0.9918	0.5296	100.36	0.2749	44.34	1/982	1/7748
SNV	Breast	ZFHX4_E933K_5	HLA-A02:01	SLPEKEWRA	0.8557	0.7935	0.8011	40.98	0.2824	1.77	1/982	1/7748
SNV	Breast	ZFP14_E309K_6	HLA-B15:01	RLHTAKKLY	0.9969	0.7507	0.1781	6.15	0.0589	5.6	1/982	1/7748
SNV	Breast	ZFP36_P185S_1	HLA-B15:01	SVLRQSISF	0.9944	0.9117	0.1599	92.37	0.2792	212.28	1/982	1/7748
SNV	Breast	ZFP36_P185S_6	HLA-B07:02	APGHPSVL	0.9998	0.6236	0.2851	72.85	0.2377	212.28	1/982	2/7748
SNV	Breast	ZFP36_P185S_8	HLA-C03:04	LAAPGHPSV	0.9989	0.9868	0.0127	2.87	0.0304	212.28	1/982	1/7748
SNV	Breast	ZFP36_P185S_7	HLA-C03:04	AAPGHPSVL	0.9995	0.9903	0.022	24.1	0.1527	212.28	1/982	1/7748
SNV	Breast	ZFP36_P185S_8	HLA-C03:04	LAAPGHPSVL	0.9998	0.9891	0.0734	95.46	0.2697	212.28	1/982	1/7748
SNV	Breast	ZFP62_R714T_7	HLA-C03:04	KAFFSSTTL	0.999	0.989	0.0018	1.88	0.0148	12.58	1/982	1/7748
SNV	Breast	ZNF112_S716F_9	HLA-B15:01	LQSHQSVHF	0.9998	0.8837	0.0024	6.07	0.0585	3.18	1/982	1/7748
SNV	Breast	ZNF112_S716F_4	HLA-B15:01	SVHFGERPY	0.9956	0.9234	0.2165	51.39	0.2209	3.18	1/982	1/7748
SNV	Breast	ZNF112_S716F_10	HLA-B15:01	YLQSHQSVHF	0.9999	0.9144	0.3036	451.8	0.5012	3.18	1/982	1/7748
SNV	Breast	ZNF14_H609Y_9	HLA-B15:01	SVRIHERSY	0.9947	0.8127	0.2754	24.07	0.1547	15.09	1/982	1/7748
SNV	Breast	ZNF14_H609Y_3	HLA-B15:01	RSYTGEKPY	0.9944	0.9513	0.2303	18.68	0.1361	15.09	1/982	1/7748
SNV	Breast	ZNF197_V117I_3	HLA-A02:01	ALIEELQKDL	0.9726	0.5597	1.2279	25.98	0.2395	5.19	1/982	1/7748
SNV	Breast	ZNF227_R764K_1	HLA-B15:01	KVHTGEKPY	0.9977	0.8938	0.1599	36.29	0.1864	5.92	1/982	1/7748
SNV	Breast	ZNF318_T1932I_3	HLA-C07:02	SRISRYRSL	0.9186	0.9756	0.0435	5.07	0.0191	9.52	1/982	1/7748
SNV	Breast	ZNF407_E82V_6	HLA-A02:01	KLDEAVPL	0.9957	0.7453	1.6035	240.3	0.5367	4.72	1/982	1/7748
SNV	Breast	ZNF777_Q173H_4	HLA-C03:04	SAVHKEQPL	0.9991	0.9908	0.0576	452.75	0.4866	30.93	1/982	1/7748
SNV	Breast	ZNF790_M104I_1	HLA-C07:02	IRICKNHSL	0.8762	0.8175	0.07	22.73	0.0825	3.99	1/982	1/7748
SNV	Breast	ZNF91_S559L_7	HLA-C07:02	KAFKQFLTL	0.9925	0.9633	0.1481	248.39	0.2954	9.91	1/982	1/7748
SNV	Breast	ZNF91_S559L_7	HLA-C03:04	KAFKQFLTL	0.9963	0.9898	0.0059	3.11	0.0326	9.91	1/982	1/7748
SNV	Breast	ARHGDIA_R180H_8	HLA-B15:01	GSYSIKSHF	0.9935	0.9215	0.151	50.67	0.2193	119.74	1/982	1/7748
SNV	Breast	ARHGDIA_R180H_8	HLA-C16:01	GSYSIKSHF	0.8937	0.9821	0.2636	354.79	0.7412	119.74	1/982	1/7748
SNV	Breast	CKAP2L_E174K_4	HLA-B44:03	VENKSLDNF	0.9891	0.9086	0.0966	13.18	0.1374	5.05	1/982	1/7748
SNV	Breast	CORO2A_C79F_3	HLA-C16:01	KVFGHRGNVL	0.9893	0.9861	0.8925	243.17	0.6322	32.19	1/982	1/7748
SNV	Breast	GIPC2_E288K_7	HLA-C03:04	FAVALDKTL	0.9997	0.9894	0.0362	5.07	0.0504	1.44	1/982	1/7748
SNV	Breast	GIPC2_E288K_7	HLA-C16:01	FAVALDKTL	0.934	0.9783	0.1326	150.73	0.5115	1.44	1/982	1/7748
SNV	Breast	MAP3K14_R408T_6	HLA-B15:01	QLRLGTGSF	0.9989	0.9611	0.0721	6.91	0.0656	6.62	1/982	1/7748
SNV	Breast	MAP3K14_R408T_7	HLA-B15:01	HQLRLGTGSF	0.9994	0.9304	0.2325	25.07	0.1576	6.62	1/982	1/7748
SNV	Breast	MAP3K5_L511F_9	HLA-B15:01	KLKTPAWYF	0.9874	0.9474	0.2094	40.66	0.1964	24.34	1/982	1/7748
SNV	Breast	NUP210_S1264L_9	HLA-C03:04	VVKAVDPTL	0.9937	0.9872	0.4783	224.53	0.3772	18.69	1/982	1/7748
SNV	Breast	NUP210_S1264L_6	HLA-C03:04	AVDPTLGQL	0.9986	0.9899	0.0592	161.12	0.3317	18.69	1/982	1/7748
SNV	Breast	NUP210_S1264L_9	HLA-C16:01	VVKAVDPTL	0.7703	0.9577	0.7526	50.8	0.2912	18.69	1/982	1/7748
SNV	Breast	NUP210_S1264L_6	HLA-C16:01	AVDPTLGQL	0.9884	0.9861	0.2496	143.67	0.5	18.69	1/982	1/7748
SNV	Breast	NUP210_S1264L_7	HLA-C16:01	KAVDPTLGQL	0.9971	0.9719	0.1253	323.39	0.7149	18.69	1/982	1/7748
SNV	Breast	PCDHGA12_K113N_5	HLA-B15:01	LMEDNVKIY	0.9802	0.7729	0.4402	74.18	0.259	1.52	1/982	1/7748
SNV	Breast	PCDHGA12_K113N_6	HLA-B15:01	ILMEDNVKIY	0.9999	0.8065	0.501	73.05	0.2575	1.52	1/982	1/7748
SNV	Breast	PCDHGA12_K113N_4	HLA-B44:03	MEDNVKIY	0.9996	0.8368	0.6639	342.85	0.3793	1.52	1/982	1/7748
SNV	Breast	RPGR_S944R_6	HLA-B44:03	SETTPRKDM	0.9738	0.8724	0.3942	461.43	0.4037	2.57	1/982	1/7748
SNV	Breast	ZC3H18_K901R_5	HLA-C16:01	KSSSRVTSV	0.9867	0.9757	0.106	34.64	0.2363	7.66	1/982	1/7748
SNV	Breast	ARL6IP6_A193V_11	HLA-A02:01	GMFPPTPLSPV	0.9964	0.5595	0.6436	101.2	0.3931	4.5	1/982	1/7748
SNV	Breast	BRD4_T296P_6	HLA-C05:01	KADTTPPTTI	1	0.876	0.04	268.58	0.3248	8.83	1/982	1/7748
SNV	Breast	JADE2_E173G_5	HLA-A02:01	RVLEGLETL	0.9835	0.8141	0.3359	9.62	0.1555	6.97	1/982	1/7748
SNV	Breast	JADE2_E173G_5	HLA-C05:01	RVLEGLETL	0.9873	0.9916	0.9465	299.2	0.3385	6.97	1/982	1/7748
SNV	Breast	NRXN1_G381D_3	HLA-C05:01	HSDIGHAMV	0.9999	0.9428	0.0587	4.51	0.0518	5.72	1/982	1/7748
SNV	Breast	PIK3CD_C7Y_11	HLA-B35:08	MPPGVDYPMEF	0.9981	0.9688	0.2785	112.03	0.1861	2.91	1/982	1/7748
SNV	Breast	SORL1_C1302Y_9	HLA-B35:08	MVCDGIIQY	0.9937	0.7165	0.0559	295.23	0.2679	2.02	1/982	1/7748
SNV	Breast	ZNF527_H268Y_8	HLA-C05:01	FTQHQTTYF	0.9765	0.8204	0.4109	271.4	0.3262	1.48	1/982	1/7748
SNV	Breast	ASXL1_D1128Y_1	HLA-C02:02	YSMSESPQV	0.7848	0.9539	0.2484	197.48	0.264	57.74	1/982	1/7748
SNV	Breast	ASXL1_G1198V_8	HLA-B50:01	IEATQAPVA	0.6908	0.8249	0.043	4.53	0.0334	57.74	1/982	1/7748
SNV	Breast	KIAA0895_G496D_6	HLA-A02:05	FLQDHDRYM	0.9598	0.7409	0.2562	12.66	0.0854	3.9	1/982	1/7748
SNV	Breast	BICD1_E621Q_4	HLA-C07:01	IRKQPMNIY	0.9425	0.5305	0.1809	346.47	0.1487	2.28	1/982	1/7748
SNV	Breast	CORO2A_R82K_1	HLA-B58:01	KGNVLDVKW	0.9984	0.9419	0.146	4.01	0.0715	6.92	1/982	1/7748
SNV	Breast	EPHB1_A736D_3	HLA-A02:01	YLDEMNYV	0.9985	0.5274	1.128	4.29	0.0923	5.77	1/982	1/7748
SNV	Breast	IGLV4-60_R66Q_4	HLA-C12:03	KAPQYLMKL	0.6667	0.9619	0.1782	49.61	0.3669	63.72	1/982	1/7748
SNV	Breast	KIF21B_A523T_6	HLA-B58:01	GASPATPAF	0.9206	0.9595	0.201	12.09	0.1547	1.38	1/982	1/7748
SNV	Breast	KIF21B_A523T_6	HLA-C12:03	GASPATPAF	0.9529	0.9774	0.0671	8.5	0.1064	1.38	1/982	1/7748
SNV	Breast	NLRC5_P356S_1	HLA-C12:03	SAEAAMVHM	0.6429	0.9713	0.3841	426.52	1.0095	3.59	1/982	1/7748
SNV	Breast	NT5DC1_D237N_6	HLA-A02:01	YILGNNFTDL	0.9708	0.6047	1.1336	362.73	0.6046	12.13	1/982	1/7748
SNV	Breast	PAQR3_V71I_6	HLA-B58:01	LSNETINIW	0.9993	0.7066	0.026	1.26	0.0096	2.84	1/982	1/7748
SNV	Breast	PAQR3_V71I_7	HLA-B58:01	ILSNETINIW	0.9903	0.6017	0.3821	5.7	0.0974	2.84	1/982	1/7748
SNV	Breast	POGZ_L1309P_9	HLA-A02:01	VLVWLGEVPGV	0.9916	0.732	1.7756	129.12	0.4324	21.32	1/982	2/7748
SNV	Breast	TBC1D8_E1075Q_5	HLA-B58:01	QAFPQAAERDW	0.9995	0.9823	0.2392	36.91	0.2634	11.82	1/982	1/7748
SNV	Breast	TBC1D8_E1075Q_1	HLA-C12:03	QAAERDWTV	0.9066	0.9879	0.786	426.99	1.01	11.82	1/982	1/7748
SNV	Breast	WDFY3_L1275F_6	HLA-A02:01	FLEEVFPSS	0.9924	0.713	0.8135	357.96	0.6017	12.3	1/982	1/7748
SNV	Breast	WDFY3_L1275F_1	HLA-B35:03	FPSSNVTTI	0.9964	0.947	0.0039	1.58	0.0047	12.3	1/982	1/7748
SNV	Breast	ACSS3_T313I_3	HLA-B35:01	RPIGGYAVM	0.9956	0.9064	0.108	2.36	0.0456	2.54	1/982	1/7748
SNV	Breast	ACSS3_T313I_3	HLA-C03:03	RPIGGYAVM	0.9931	0.9906	1.3247	43.01	0.1902	2.54	1/982	1/7748
SNV	Breast	CEPT1_M246L_10	HLA-A02:01	SMIPVLNIQL	0.9751	0.6058	0.4654	47.75	0.2973	5.77	1/982	1/7748
SNV	Breast	DPYSL2_C179Y_1	HLA-A02:01	YQIYEVLSV	0.9963	0.6897	0.1482	10.75	0.1645	54.54	1/982	1/7748
SNV	Breast	DPYSL2_C179Y_5	HLA-A02:01	QLTDYQIYEV	0.998	0.6394	0.6693	47.07	0.2959	54.54	1/982	1/7748
SNV	Breast	DPYSL2_C179Y_4	HLA-C05:01	LTDYQIYEV	0.9999	0.9916	0.1445	8.52	0.0791	54.54	1/982	1/7748
SNV	Breast	SFPQ_N384S_6	HLA-B35:01	SPYVSSELL	0.9516	0.7535	0.2647	283.21	0.4173	61.02	1/982	1/7748
SNV	Breast	STAG1_A704P_6	HLA-C03:03	TSFHNPHDL	0.9981	0.9913	0.0559	414.08	0.4721	9.91	1/982	1/7748
SNV	Breast	MTERF1_L225F_9	HLA-A24:02	FLQAAGLSF	0.9611	0.5491	0.3977	331.07	0.6246	8.44	1/982	1/7748
SNV	Breast	MTERF1_L225F_10	HLA-A24:02	EFLQAAGLSF	0.9897	0.7888	0.2755	259.08	0.5854	8.44	1/982	1/7748
SNV	Breast	MTERF1_L225F_8	HLA-B15:01	LQAAGLSF	0.9995	0.8944	0.9504	55.59	0.2293	8.44	1/982	1/7748
SNV	Breast	MTERF1_L225F_9	HLA-B15:01	FLQAAGLSF	0.999	0.9558	0.0035	5.93	0.0576	8.44	1/982	1/7748
SNV	Breast	MTERF1_L225F_9	HLA-C03:04	FLQAAGLSF	0.9806	0.9939	0.2805	168.75	0.338	8.44	1/982	1/7748
SNV	Breast	MTERF1_L225F_9	HLA-C05:01	FLQAAGLSF	0.8766	0.9709	0.5301	122.62	0.2375	8.44	1/982	1/7748
SNV	Breast	NUP153_L336V_5	HLA-C03:04	VSSPVNSPL	0.9997	0.9814	0.0165	24.59	0.1539	43.52	1/982	1/7748
SNV	Breast	PHKA1_T1031S_3	HLA-B15:01	SMSPSSGSF	0.9984	0.9224	0.0024	2.9	0.0259	11.15	1/982	1/7748
SNV	Breast	PINK1_M175T_7	HLA-C03:04	AVYEATTPTL	0.9992	0.9893	0.4733	145.19	0.3175	13.69	1/982	1/7748
SNV	Breast	SRF_E209D_4	HLA-C03:04	ITSDTGKAL	0.9968	0.9833	0.0691	17.31	0.1261	41.41	1/982	1/7748
SNV	Breast	SRF_E209D_3	HLA-C05:01	TSDTGKALI	0.9999	0.9417	0.0278	41.54	0.1591	41.41	1/982	1/7748
SNV	Breast	C11orf16_A84S_2	HLA-A31:01	ASNTWVLAR	0.9786	0.6859	0.0293	7.67	0.0345	4.87	1/982	1/7748
SNV	Breast	C11orf16_A84S_2	HLA-A31:01	ASNTWVLARR	0.9787	0.6326	0.1795	284.75	0.3429	4.87	1/982	1/7748
SNV	Breast	CDKN2AIP_S280L_9	HLA-B35:03	SALEGSSAL	0.9655	0.8684	0.1669	94.33	0.1007	25.9	1/982	1/7748
SNV	Breast	CHRM1_P329R_10	HLA-A31:01	RSSPNTVKRR	0.9769	0.7612	0.6609	309.32	0.3548	20.89	1/982	1/7748
SNV	Breast	FAM3C_F39L_7	HLA-A31:01	ASLGNLLAR	0.9801	0.7777	0.0559	23.22	0.0933	36.39	1/982	1/7748
SNV	Breast	FAM3C_F39L_3	HLA-B08:01	NLLARSAL	0.9997	0.8409	0.1027	6.45	0.028	36.39	1/982	1/7748
SNV	Breast	KHDRBS3_D288E_6	HLA-C04:01	SYDSYENSY	0.8294	0.5988	0.1424	70.94	0.0645	15.77	1/982	1/7748
SNV	Breast	PLEKHM2_V68A_4	HLA-A31:01	WVLAVHFTR	0.9537	0.5011	0.0816	336.79	0.3669	62.87	1/982	1/7748
SNV	Breast	TAOK2_R636H_4	HLA-C07:01	RRQHQYFEL	0.9991	0.6479	0.0096	320.68	0.1427	26.17	1/982	1/7748
SNV	Breast	ACSL3_S670N_8	HLA-B18:01	SEAAISANL	0.8691	0.9238	0.2361	356.65	0.2379	77.75	1/982	1/7748
SNV	Breast	CAGE1_S216F_9	HLA-C16:01	LAKSIAKEF	0.5131	0.9883	0.1095	320.48	0.7123	1.11	1/982	1/7748
SNV	Breast	CAGE1_S216F_7	HLA-C16:01	KSIAKEFAL	0.9976	0.9897	0.0934	6.81	0.0681	1.11	1/982	1/7748
SNV	Breast	CAGE1_S216F_9	HLA-C12:03	LAKSIAKEF	0.8617	0.9852	0.1451	66.61	0.4244	1.11	1/982	1/7748
SNV	Breast	CAGE1_S216F_7	HLA-C12:03	KSIAKEFAL	0.9984	0.9865	0.4559	110.69	0.5493	1.11	1/982	1/7748
SNV	Breast	MYO1B_F208C_8	HLA-B18:01	GERNFHVCY	0.9157	0.7461	0.1668	60.03	0.1265	70.07	1/982	1/7748
SNV	Breast	NRDE2_R1150W_6	HLA-B18:01	TEKELWVRL	0.9703	0.8496	0.2926	114.7	0.1632	4.11	1/982	1/7748
SNV	Breast	PRPF3_S681T_9	HLA-A02:01	ALSESVLET	0.9936	0.7294	0.7056	177.88	0.4873	48.9	1/982	1/7748
SNV	Breast	RPS6KA3_V527I_7	HLA-A25:01	FTITKTIEY	0.9734	0.8217	0.0357	28.96	0.0129	46.05	1/982	1/7748
SNV	Breast	RPS6KA3_V527I_7	HLA-C16:01	FTITKTIEY	0.5767	0.9633	0.0198	18.1	0.1599	46.05	1/982	1/7748
SNV	Breast	RPS6KA3_V527I_9	HLA-C12:03	VLFTITKTI	0.8953	0.9777	1.0691	216.03	0.7622	46.05	1/982	1/7748
SNV	Breast	RPS6KA3_V527I_7	HLA-C12:03	FTITKTIEY	0.7761	0.9827	0.0319	2.82	0.0257	46.05	1/982	1/7748
SNV	Breast	SEMA4F_N124S_2	HLA-C16:01	HSFVQILAI	0.8905	0.9414	0.2141	27.17	0.1991	15.01	1/982	1/7748
SNV	Breast	SEMA4F_N124S_2	HLA-C12:03	HSFVQILAI	0.8597	0.941	0.0836	10.56	0.1292	15.01	1/982	1/7748
SNV	Breast	TOPBP1_E28K_4	HLA-C16:01	KALKSIKEF	0.9464	0.9681	0.0934	20.91	0.1743	70.25	1/982	1/7748
SNV	Breast	TOPBP1_E28K_4	HLA-C12:03	KALKSIKEF	0.737	0.9772	0.2004	75.33	0.4532	70.25	1/982	1/7748
SNV	Breast	TP53_P151H_3	HLA-C16:01	STHPPGTRV	0.6863	0.9824	0.2496	139.69	0.4942	127.48	1/982	2/7748
SNV	Breast	TP53_P151H_3	HLA-C12:03	STHPPGTRV	0.9034	0.9761	0.143	21.1	0.2177	127.48	1/982	1/7748
SNV	Breast	USP54_L1412S_6	HLA-C16:01	YSAENSRRI	0.6069	0.9703	0.8789	126.3	0.4734	28	1/982	1/7748
SNV	Breast	USP54_L1412S_6	HLA-C12:03	YSAENSRRI	0.8545	0.9478	0.4036	24.62	0.2408	28	1/982	1/7748
SNV	Breast	VPS4B_E293A_2	HLA-C12:03	FAKRIYIPL	0.993	0.9747	0.0201	297.3	0.8752	80.59	1/982	1/7748
SNV	Breast	WDR81_V821M_5	HLA-A02:01	SLQPMLDTL	0.9387	0.6951	0.2899	14.68	0.1908	21.84	1/982	1/7748
SNV	Breast	WDR81_V821M_5	HLA-C16:01	SLQPMLDTL	0.6548	0.9649	1.0662	405.53	0.779	21.84	1/982	1/7748
SNV	Breast	CDON_T56S_6	HLA-C03:04	SAQPVSTRI	0.9962	0.9806	0.1374	54.27	0.2104	2.33	1/982	1/7748
SNV	Breast	CLK3_E179K_4	HLA-B15:01	REHKGRLRY	0.7011	0.8709	0.3598	126.26	0.3113	3.61	1/982	1/7748
SNV	Breast	OSBPL8_V148I_6	HLA-C03:04	ITDPSIIVM	0.9986	0.9846	0.0519	8.84	0.0746	13.42	1/982	1/7748
SNV	Breast	RPN1_V131M_6	HLA-A02:01	KISVIMETV	0.9892	0.7503	0.3051	219.68	0.5221	99.42	1/982	1/7748
SNV	Breast	RPN1_V131M_3	HLA-A02:01	VIMETVYTHV	0.9976	0.5066	0.3222	459.75	0.6569	99.42	1/982	1/7748
SNV	Breast	SAMD9_V768L_7	HLA-B08:01	VLKNKTLDF	0.9637	0.5905	0.2323	168.5	0.2181	4.01	1/982	1/7748
SNV	Breast	SAMD9_V768L_7	HLA-B15:01	VLKNKTLDF	0.996	0.8524	0.2754	32.63	0.1771	4.01	1/982	1/7748
SNV	Breast	ADAMTS6_D351N_5	HLA-C03:04	IAHHNNAVL	0.9981	0.9883	0.009	3.01	0.0317	1.89	1/982	1/7748
SNV	Breast	CD86_Q138E_3	HLA-C03:04	FSEPEIVPI	0.9493	0.9901	0.1511	402.47	0.4675	19.84	1/982	1/7748
SNV	Breast	FAM171A1_A244V_9	HLA-C07:02	LRHNAYVAV	0.8369	0.9175	0.2943	350.73	0.3451	16.97	1/982	1/7748
SNV	Breast	HCFC2_R107H_8	HLA-A24:02	LYELQASHW	0.995	0.6444	0.3252	276.49	0.5944	13.95	1/982	1/7748
SNV	Breast	RFX2_A600D_4	HLA-C07:02	KQHDGSPSF	0.9758	0.9441	0.028	346.62	0.3434	8.11	1/982	1/7748
SNV	Breast	RGS11_T293M_8	HLA-B07:02	APTVAAPM	0.9991	0.7248	0.548	199.25	0.3209	2.79	1/982	1/7748
SNV	Breast	RGS11_T293M_8	HLA-B07:02	APTVAAPMKL	0.9891	0.6015	0.1965	38.36	0.1898	2.79	1/982	1/7748
SNV	Breast	RGS11_T293M_5	HLA-C03:04	VAAPMKLRV	0.9608	0.9807	0.547	205.25	0.3649	2.79	1/982	1/7748
SNV	Breast	TMCC1_V612G_6	HLA-C03:04	VANCVGPLM	0.9984	0.9882	0.1669	245.62	0.3895	21.01	1/982	1/7748
SNV	Breast	TTC17_A631T_5	HLA-A24:02	LYWRTVGNSTF	0.998	0.6419	0.2421	32.26	0.3192	38.13	1/982	1/7748
SNV	Breast	TTC17_A631T_3	HLA-C07:02	WRTVGNSTF	0.7931	0.9709	0.2402	88.51	0.1823	38.13	1/982	1/7748
SNV	Breast	ATAD2_R730K_4	HLA-B44:03	AEFKTNKTL	0.9934	0.9417	0.0966	2.56	0.0513	15.43	1/982	1/7748
SNV	Breast	ATP2A1_R325W_1	HLA-B08:01	WMAKKNAI	0.9991	0.6964	0.2028	373.23	0.2956	1.11	1/982	1/7748
SNV	Breast	BRPF3_E590Q_1	HLA-C16:01	QLMPFNVLL	0.9186	0.9782	1.1405	87.62	0.398	25.99	1/982	1/7748
SNV	Breast	C16orf91_E100K_5	HLA-B44:03	REESKADQW	0.997	0.8892	0.0786	4.65	0.0841	62.11	1/982	1/7748
SNV	Breast	CLPX_R200T_8	HLA-C16:01	AVYNHYKTI	0.8115	0.9714	1.346	26.19	0.1956	30.26	1/982	1/7748
SNV	Breast	FIGN_T400I_5	HLA-C07:01	SRALIPPSY	0.997	0.7107	0.076	20	0.0379	1.04	1/982	1/7748
SNV	Breast	FOCAD_L673V_3	HLA-C16:01	FSVVPSLTV	0.9285	0.9793	0.1579	114.58	0.4533	17.3	1/982	1/7748
SNV	Breast	GRID1_G906V_1	HLA-C16:01	VGLAPTQTL	0.9235	0.9776	0.5473	13.76	0.1284	1.78	1/982	1/7748
SNV	Breast	HIST1H1E_A61V_3	HLA-B08:01	LAVLKKAL	0.9996	0.8148	0.2102	38.85	0.0996	7.15	1/982	1/7748
SNV	Breast	ITGA7_S975R_7	HLA-B44:03	GERQEPRMSW	0.9927	0.9522	0.0897	1.66	0.0291	53.22	1/982	1/7748
SNV	Breast	KDM4B_P623T_8	HLA-C07:01	GRPPTRSTL	0.963	0.7308	0.1598	342.49	0.1478	25.64	1/982	1/7748
SNV	Breast	NEBL_A195E_1	HLA-B44:03	EEYKKGQGI	0.9769	0.6309	0.2582	44.85	0.2173	30.71	1/982	1/7748
SNV	Breast	NLRC4_R181Q_6	HLA-C16:01	STLLQQIAM	0.8576	0.9865	0.3441	61.56	0.3262	2.6	1/982	1/7748
SNV	Breast	PDE4D_S299Y_9	HLA-B44:03	LETLQTRHY	0.9987	0.8774	0.07	7.46	0.1071	2.62	1/982	1/7748
SNV	Breast	PEX1_V429I_6	HLA-B44:03	IEMHAIVRI	0.9757	0.8363	0.1881	56.87	0.2393	12.44	1/982	1/7748
SNV	Breast	PEX1_V429I_3	HLA-C16:01	HAIVRITPV	0.9866	0.9833	0.2191	111.9	0.4484	12.44	1/982	1/7748
SNV	Breast	PEX1_V429I_1	HLA-C16:01	IVRITPVEV	0.505	0.9851	1.4525	191.46	0.569	12.44	1/982	1/7748
SNV	Breast	SH2B1_D519N_4	HLA-B44:03	GEGNQPLSGY	0.9624	0.9369	0.3761	6.61	0.1003	25.16	1/982	1/7748
SNV	Breast	SUSD2_G556R_2	HLA-C07:01	ARDRVSIML	0.9919	0.5179	0.2011	404.49	0.1597	27.61	1/982	1/7748
SNV	Breast	SUSD2_G556R_4	HLA-C16:01	VAARDRVSI	0.8286	0.965	1.0913	105.8	0.4369	27.61	1/982	1/7748
SNV	Breast	SUSD2_G556R_3	HLA-C16:01	AARDRVSIM	0.6664	0.9611	0.1001	12.34	0.1178	27.61	1/982	1/7748
SNV	Breast	SVIL_S228L_5	HLA-B44:03	AESSLTFSF	0.9995	0.9434	0.003	1.35	0.0129	31.57	1/982	1/7748
SNV	Breast	TK1_C66Y_1	HLA-C16:01	YTHDRNTM	0.9544	0.9589	0.1431	113.9	0.4521	50.4	1/982	1/7748
SNV	Breast	TP53_K132N_7	HLA-C16:01	YSPALNNMF	0.6867	0.969	0.2915	427.61	0.7941	45.5	1/982	1/7748
SNV	Breast	XRRA1_T195I_2	HLA-C16:01	LIGNGLTSL	0.8586	0.9784	1.1141	352.46	0.7393	2.61	1/982	1/7748
SNV	Breast	ST5_R817H_1	HLA-B14:02	HRRGISAAL	0.9932	0.8164	0.0098	35.19	0.0151	8.82	1/982	1/7748
SNV	Breast	TCTN1_N134K_4	HLA-C12:03	FTAKPPQRV	0.9565	0.9863	0.2183	46.99	0.3575	11.73	1/982	1/7748
SNV	Breast	TCTN1_N134K_3	HLA-C12:03	TAKPPQRVF	0.9632	0.9746	0.1896	21.43	0.22	11.73	1/982	1/7748
SNV	Breast	TCTN1_N134K_4	HLA-C12:03	FTAKPPQRVF	0.9994	0.9685	0.4194	200.99	0.7348	11.73	1/982	1/7748
SNV	Breast	VPS4B_R252H_7	HLA-B18:01	NESEAAHRI	0.9642	0.8504	0.1898	492.11	0.2607	29.3	1/982	1/7748
SNV	Breast	VPS4B_R252H_3	HLA-C12:03	AAHRIKTEF	0.8292	0.9926	0.1244	32.39	0.2918	29.3	1/982	1/7748
SNV	Breast	ZFHX3_I1138N_7	HLA-B18:01	DEDLGQNF	0.9962	0.9612	0.2804	496.04	0.2613	2.11	1/982	1/7748
SNV	Breast	ZFHX3_I1138N_9	HLA-B18:01	EEDEDLGQNF	0.757	0.7401	0.1524	313	0.229	2.11	1/982	1/7748
SNV	Breast	EEA1_E726K_1	HLA-B44:03	KELEGQIKKL	0.9946	0.8745	0.1742	90.02	0.2756	17.29	1/982	1/7748
SNV	Breast	EEF2_E230K_8	HLA-C16:01	FTLKQFAKM	0.8717	0.9655	0.1095	305.13	0.6984	1741.59	1/982	1/7748
SNV	Breast	EEF2_E230K_3	HLA-C16:01	FAKMYVAKF	0.676	0.9735	0.0639	186.54	0.5628	1741.59	1/982	1/7748
SNV	Breast	FAM114A2_E495K_1	HLA-A02:01	KLQGQKPLL	0.9759	0.6062	0.5905	381.08	0.6155	10.03	1/982	1/7748
SNV	Breast	FSD1L_I58F_2	HLA-C16:01	FFDTLHHTL	0.9995	0.9842	0.4427	158.8	0.524	1.3	1/982	1/7748
SNV	Breast	GNE_I676V_7	HLA-A02:01	VLASHYVHI	0.9952	0.5427	0.0449	6.98	0.129	15.02	1/982	1/7748
SNV	Breast	LURAP1L_T158P_8	HLA-A02:01	SLLESQSPSL	0.9859	0.8014	0.5871	20.69	0.2202	56.91	2/982	2/7748
SNV	Breast	PTPRD_T342M_9	HLA-C16:01	STATSITLM	0.9305	0.9742	0.1909	103.33	0.432	6.97	1/982	1/7748
SNV	Breast	PUS10_G502R_7	HLA-C16:01	RTKPNIRSL	0.9886	0.9632	0.1394	3.21	0.0258	4.11	1/982	1/7748
SNV	Breast	SAMD9_R174H_8	HLA-B44:03	DEFSNPYHY	0.9989	0.9074	0.0321	1.68	0.0298	23.99	1/982	1/7748
SNV	Breast	SAMD9_R174H_9	HLA-B44:03	FDEFSNPYHY	0.9625	0.9171	1.728	42.21	0.2116	23.99	1/982	1/7748
SNV	Breast	SAMD9_R174H_6	HLA-C16:01	FSNPYHYKL	0.9683	0.9738	0.0187	3.83	0.0341	23.99	1/982	1/7748
SNV	Breast	SART3_S79F_4	HLA-B44:03	AESFPGEY	0.9988	0.9307	0.4605	77.19	0.2642	20.59	1/982	1/7748
SNV	Breast	SART3_S79F_4	HLA-B44:03	AESFPGEYEW	0.9993	0.9942	0.0059	1.15	0.0054	20.59	1/982	1/7748
SNV	Breast	SPTLC1_C255F_3	HLA-A02:01	TIFPLPELV	0.9505	0.7723	0.4195	10.27	0.1608	66.24	1/982	1/7748
SNV	Breast	SPTLC1_C255F_4	HLA-C16:01	GTIFPLPEL	0.9679	0.9853	1.0535	178.43	0.5521	66.24	1/982	1/7748
SNV	Breast	SPTLC1_C255F_1	HLA-C16:01	FPLPELVKL	0.8195	0.9902	0.9782	389	0.7672	66.24	1/982	1/7748
SNV	Breast	TBCE_E245K_3	HLA-C16:01	ISKRPTDVL	0.7868	0.9215	0.5381	215.16	0.5971	34.09	1/982	1/7748
SNV	Breast	WIPI1_D218N_5	HLA-C16:01	FSVPNGQKL	0.9372	0.9112	0.0377	5.81	0.0575	60.26	1/982	1/7748
SNV	Breast	SCAP_L1166F_10	HLA-B35:01	FAHRGDVTSF	0.9919	0.9253	0.277	134.38	0.3377	62.74	1/982	1/7748
SNV	Breast	SERPINA5_K350I_6	HLA-B13:02	SEMVHIAVV	0.9983	0.7319	0.0113	70.48	0.0365	23.95	1/982	1/7748
SNV	Breast	LRRN1_R390H_2	HLA-B38:01	IHFMEPLSM	0.9971	0.8947	0.0159	11.59	0.0143	68.51	1/982	1/7748
SNV	Breast	LRRN1_R390H_2	HLA-B38:01	IHFMEPLSMF	0.9952	0.8995	0.6171	304.59	0.1392	68.51	1/982	1/7748
SNV	Breast	NEDD9_E167K_4	HLA-C12:03	YVYKYPSRY	0.7108	0.9461	0.4673	2.13	0.0119	11.23	1/982	1/7748
SNV	Breast	NOX1_V496G_6	HLA-C12:03	KATDIGTGL	0.9732	0.9674	0.1334	6.27	0.0774	1.06	1/982	1/7748
SNV	Breast	SCRIB_H1248P_2	HLA-B56:01	LPWGPEATEA	0.993	0.8813	0.1061	185.16	0.1097	29.14	1/982	1/7748
SNV	Breast	SH3PXD2A_I694V_9	HLA-C12:03	SSASFSSSV	0.9908	0.9787	0.222	79.1	0.4646	5.41	1/982	1/7748
SNV	Breast	SH3PXD2A_I694V_7	HLA-C12:03	ASFSSSVTI	0.9908	0.9666	0.1004	14.18	0.1667	5.41	1/982	1/7748
SNV	Breast	TMEM80_L87P_4	HLA-C12:03	STVPSSVPL	0.9894	0.9796	0.0461	21.32	0.2192	8.62	1/982	1/7748
SNV	Breast	CD300A_I61T_6	HLA-A02:01	FLCDKTVET	0.9792	0.7943	0.2395	18.62	0.2113	3.36	1/982	1/7748
SNV	Breast	EFCAB13_Q10L_3	HLA-A02:01	CLAEENIDL	0.9427	0.7364	0.783	393.55	0.6226	1.86	1/982	1/7748
SNV	Breast	EFCAB13_Q10L_2	HLA-C05:01	LAEENIDLL	0.9996	0.9102	0.0726	30.81	0.1432	1.86	1/982	1/7748
SNV	Breast	GSK3A_S237F_9	HLA-C07:02	FRSLAYIHF	0.9707	0.7881	0.021	31.91	0.1014	22.17	1/982	1/7748
SNV	Breast	NLRP1_T546I_5	HLA-C05:01	LTSKITTTL	0.9996	0.8968	0.4512	340.97	0.355	3.78	1/982	1/7748
SNV	Breast	PPHLN1_I341L_9	HLA-A02:01	ALRQNLHEL	0.9116	0.6021	0.702	393.09	0.6224	6.81	1/982	1/7748
SNV	Breast	PPHLN1_I341L_3	HLA-B18:01	HELESAGQTW	0.8885	0.8769	0.0774	174.2	0.1907	6.81	1/982	1/7748
SNV	Breast	SNX25_D192N_8	HLA-A02:01	KLINSNSNV	0.9898	0.514	0.2931	10.64	0.1636	8.11	1/982	1/7748
SNV	Breast	ABCA7_V23I_7	HLA-C07:01	YRRRQPIQL	0.9958	0.5382	0.0278	6.17	0.0114	9.6	1/982	1/7748
SNV	Breast	ABCA7_V23I_6	HLA-C07:01	RRRQPIQLL	0.9975	0.6185	0.0456	21.19	0.0393	9.6	1/982	1/7748
SNV	Breast	ABCA7_V23I_5	HLA-C07:01	RRQPIQLLV	0.9858	0.6256	0.0498	25.31	0.0437	9.6	1/982	1/7748
SNV	Breast	ABCA7_V23I_7	HLA-C07:01	YRRRQPIQLL	0.995	0.5357	0.3039	291.23	0.1352	9.6	1/982	1/7748
SNV	Breast	BAIAP3_P595S_4	HLA-C07:01	QRLSGLVVL	0.9995	0.818	0.0786	55.01	0.0687	2.19	1/982	1/7748
SNV	Breast	CLDN15_D148H_6	HLA-C07:01	TRDFFHPLY	0.9959	0.6871	0.25	100.72	0.0874	7.42	1/982	1/7748
SNV	Breast	CUL7_Q622L_9	HLA-C03:04	SQSPNTPLL	0.9925	0.9581	0.5222	314	0.4273	18.87	1/982	1/7748
SNV	Breast	DDX55_R415T_6	HLA-C03:04	MALADTAVF	0.9988	0.9885	0.1825	9.01	0.0757	6.78	1/982	1/7748
SNV	Breast	DPY19L3_A168T_8	HLA-C03:04	YTLFGLQTI	0.9859	0.9961	0.2437	52.32	0.2065	7.45	1/982	1/7748
SNV	Breast	LAMA1_T233M_8	HLA-C07:01	LRLQRIRML	0.9942	0.601	0.1348	23.13	0.0415	1.26	1/982	1/7748
SNV	Breast	LAMA1_T233M_1	HLA-C03:04	MLNADLMTL	0.9804	0.9905	0.4309	53.12	0.2081	1.26	1/982	1/7748
SNV	Breast	MSH3_H729Q_8	HLA-C03:04	VIDEIRMQL	0.9995	0.9871	0.0519	18.49	0.1316	8.7	1/982	1/7748
SNV	Breast	PKHD1_N3940Y_3	HLA-C03:04	KVYQCPHQL	0.9912	0.9754	0.0284	146	0.3182	2.94	1/982	1/7748
SNV	Breast	RPS6KA3_F303L_2	HLA-A31:01	LLKRNPANR	0.9481	0.5554	0.2968	257.53	0.3286	25.61	1/982	1/7748
SNV	Breast	SEC23B_G305A_2	HLA-C03:04	VADELKIPI	0.9939	0.9891	0.1061	435.18	0.4802	39.59	1/982	1/7748
SNV	Breast	TENM3_S1695N_4	HLA-C07:01	LRNNYQIGY	0.9932	0.6024	0.2138	106.57	0.0896	1.07	1/982	1/7748
SNV	Breast	ABCC3_G738V_9	HLA-C05:01	LADLEMLPV	0.9999	0.9882	0.0803	199.6	0.2884	1.81	1/982	1/7748
SNV	Breast	APOB_A3075T_6	HLA-C05:01	FLNNYTLFL	0.9933	0.9792	0.5234	2.27	0.0302	2.27	1/982	1/7748
SNV	Breast	APOB_D1070H_1	HLA-C05:01	HVDLGTIL	1	0.9008	0.0665	297.89	0.3379	2.27	1/982	1/7748
SNV	Breast	AUTS2_G762V_2	HLA-C05:01	FVGLGNPSV	0.9966	0.9913	1.0097	443.18	0.3881	4.27	1/982	1/7748
SNV	Breast	BLZF1_T282S_4	HLA-B13:02	REQSYSPSV	0.9894	0.8472	0.0654	111.26	0.0556	28.59	1/982	1/7748
SNV	Breast	CEP192_S1893P_2	HLA-C05:01	LPDSYMVTV	0.9974	0.9739	0.3016	319.58	0.3468	4.37	1/982	1/7748
SNV	Breast	EEF2K_K132Q_9	HLA-C05:01	WLDDEVLIQM	0.9999	0.965	0.0334	36.29	0.1509	10.31	1/982	1/7748
SNV	Breast	GIPC1_G309D_7	HLA-C05:01	ALDERLDDF	0.9965	0.8508	0.101	70.32	0.1934	61.56	1/982	1/7748
SNV	Breast	KIF3A_R516I_7	HLA-C05:01	RAEQLRIEL	0.9999	0.982	0.2409	198.94	0.2881	4.83	1/982	1/7748
SNV	Breast	LAPTM4B_A161V_5	HLA-C05:01	FMDDVNMCI	0.9989	0.9762	0.017	1.2	0.0071	147.43	1/982	1/7748
SNV	Breast	LAPTM4B_A161V_5	HLA-C05:01	FMDDVNMCIAI	0.9999	0.9759	0.1469	60.51	0.1829	147.43	1/982	1/7748
SNV	Breast	LPIN1_A113V_6	HLA-C05:01	ILSEGVSRM	0.9994	0.9711	0.4176	39.32	0.1558	2.82	1/982	1/7748
SNV	Breast	MRPL18_L59F_10	HLA-C06:02	NRNPRNLELF	0.9351	0.9949	0.6264	263.19	0.1474	64.12	1/982	1/7748
SNV	Breast	MSH2_G410S_6	HLA-C06:02	YRLYQSINQL	0.9197	0.9932	0.6026	40.58	0.0602	21.31	1/982	1/7748
SNV	Breast	PRKCH_K591E_3	HLA-C05:01	MTENPTMRL	0.9999	0.9319	0.1355	5.92	0.0648	5.99	1/982	1/7748
SNV	Breast	PRKCH_K591E_4	HLA-C05:01	FMTENPTMRL	0.9998	0.9004	1.2036	153.21	0.258	5.99	1/982	1/7748
SNV	Breast	SDCBP2_A36G_1	HLA-A03:01	GISPPPVLY	0.9553	0.6157	0.7879	44.76	0.1987	1.76	1/982	1/7748
SNV	Breast	SELP_C292Y_3	HLA-C05:01	FSYEEGFAL	0.9955	0.9488	0.3059	14.94	0.1096	25.95	1/982	1/7748
SNV	Breast	TEP1_E2458V_2	HLA-C05:01	LVNPSRTLI	0.991	0.9407	0.8991	408.28	0.3778	7.2	1/982	1/7748
SNV	Breast	TRIM2_G571V_2	HLA-A03:01	IVSGKLMGPK	0.9953	0.6275	0.2587	80.77	0.2618	2.77	1/982	1/7748
SNV	Breast	UEVLD_E342Q_7	HLA-B44:02	AQTSGKQVW	0.6606	0.6515	0.2488	275.25	0.3493	16.84	1/982	1/7748
SNV	Breast	ABCA9_N1371S_1	HLA-A69:01	SALWPNLTV	0.7737	0.7957	0.1219	242.37	0.1724	3.94	1/982	1/7748
SNV	Breast	ABCA9_N1371S_1	HLA-C03:03	SALWPNLTV	0.9682	0.9915	0.0778	84.16	0.2566	3.94	1/982	1/7748
SNV	Breast	ACSM3_S193F_9	HLA-A11:01	ASKCENLHFK	0.9955	0.5527	0.2221	386.91	0.5141	3.75	1/982	1/7748
SNV	Breast	BCL9L_P1097R_4	HLA-C03:03	YAMRSSTPL	0.9997	0.9761	0.0008	1.78	0.0134	13.75	1/982	1/7748
SNV	Breast	BCL9L_P1097R_4	HLA-C12:02	YAMRSSTPL	0.9991	0.9657	0.0269	46.31	0.1055	13.75	1/982	1/7748
SNV	Breast	CREB3L2_I125M_9	HLA-C03:03	STDFPSTSM	0.9971	0.9952	0.1945	261.89	0.3983	22.87	1/982	1/7748
SNV	Breast	FBXO5_T355P_2	HLA-C03:03	SPYSRHNEF	0.8985	0.9925	1.8626	416.11	0.4729	9.73	1/982	1/7748
SNV	Breast	FRMD4A_V133F_5	HLA-A69:01	ELIDFDSEV	0.9928	0.7883	0.0535	13.24	0.0365	2.55	1/982	1/7748
SNV	Breast	RET_P117T_8	HLA-C03:03	SVRNRGFTL	0.8401	0.9667	1.5235	475.9	0.4946	11.76	1/982	1/7748
SNV	Breast	RET_P117T_8	HLA-C12:02	SVRNRGFTL	0.7834	0.9589	1.744	293.54	0.3596	11.76	1/982	1/7748
SNV	Breast	SPPL3_R34M_7	HLA-A69:01	IVYGSFMSL	0.8598	0.6963	0.1529	88.59	0.1057	10.72	1/982	1/7748
SNV	Breast	SPPL3_R34M_7	HLA-C03:03	IVYGSFMSL	0.9974	0.9824	0.0319	2.93	0.0309	10.72	1/982	1/7748
SNV	Breast	SPPL3_R34M_7	HLA-C12:02	IVYGSFMSL	0.9916	0.9818	0.0875	13.74	0.0398	10.72	1/982	1/7748
SNV	Breast	CACHD1_M543I_1	HLA-C03:03	IVQDTSFIL	0.9983	0.9867	0.2868	87.65	0.2608	7.62	1/982	1/7748
SNV	Breast	CACHD1_M543I_1	HLA-C03:04	IVQDTSFIL	0.9983	0.9867	0.3653	87.65	0.2608	7.62	1/982	1/7748
SNV	Breast	ERBB2_V777L_2	HLA-A11:01	GLGSPYVSR	0.8953	0.7403	0.8921	397.44	0.5191	157.3	1/982	2/7748
SNV	Breast	IMPG1_P646L_6	HLA-C03:03	FAKSVLYNL	0.9989	0.9937	0.0631	215.5	0.3716	1.11	1/982	1/7748
SNV	Breast	IMPG1_P646L_6	HLA-C03:04	FAKSVLYNL	0.9989	0.9937	0.1027	215.5	0.3716	1.11	1/982	1/7748
SNV	Breast	SCAP_A316V_1	HLA-C03:03	VLAAVVTVL	0.9919	0.9869	0.5427	80.47	0.2519	73.46	1/982	1/7748
SNV	Breast	SCAP_A316V_1	HLA-C03:04	VLAAVVTVL	0.9919	0.9869	0.5621	80.47	0.2519	73.46	1/982	1/7748
SNV	Breast	TP53_G187S_1	HLA-A68:02	SLAPPQHLI	0.72	0.5491	0.3757	125.65	0.2511	50.76	1/982	1/7748
SNV	Breast	ANKRD6_V7A_6	HLA-C03:04	AAAALSERL	0.9996	0.9856	0.4733	225.73	0.3779	4.88	1/982	1/7748
SNV	Breast	DCAF11_D89Y_9	HLA-A31:01	RAWDGRLGYR	0.9974	0.5183	0.2285	4.43	0.0202	64.36	1/982	1/7748
SNV	Breast	ERN1_G703D_4	HLA-C03:04	NAHDKIKAM	0.9979	0.9703	0.0321	273.99	0.4053	16.13	1/982	1/7748
SNV	Breast	NF2_E215D_5	HLA-A02:01	AQDLDMYGV	0.9522	0.7529	0.6693	490.9	0.6714	13.73	1/982	1/7748
SNV	Breast	PATZ1_G295V_9	HLA-B40:01	REAGILPCV	0.9864	0.79	0.1154	10.18	0.2448	102.45	1/982	1/7748
SNV	Breast	PATZ1_G295V_9	HLA-B40:01	REAGILPCVL	0.9899	0.6247	0.0963	1.96	0.0831	102.45	1/982	1/7748
SNV	Breast	RANBP17_V188I_5	HLA-A02:01	SLKDILVLA	0.9827	0.5566	0.2524	7.97	0.1401	4.04	1/982	1/7748
SNV	Breast	RANBP17_V188I_6	HLA-C03:04	TSLKDILVL	0.9995	0.9849	0.5222	281.03	0.4094	4.04	1/982	1/7748
SNV	Breast	RCAN2_D134Y_1	HLA-A02:01	YLLYAVAKL	0.9716	0.6249	0.058	3.53	0.0751	16.54	1/982	1/7748
SNV	Breast	DENND4B_R316P_5	HLA-B39:01	VRSRPAIAV	0.8785	0.8875	0.1757	456.77	0.2999	10.62	1/982	1/7748
SNV	Breast	DENND4B_R316P_7	HLA-C12:03	RAVRSRPAI	0.5907	0.9647	0.9444	112.86	0.5545	10.62	1/982	1/7748
SNV	Breast	DENND4B_R316P_4	HLA-C12:03	RSRPAIAVL	0.9885	0.9767	0.159	4.82	0.057	10.62	1/982	1/7748
SNV	Breast	PTGS2_R228H_5	HLA-C12:03	LARQHKLRL	0.6054	0.9865	0.2999	96.45	0.5125	4.4	1/982	1/7748
SNV	Breast	ZNF366_Q640L_7	HLA-A02:01	GLAPQSLQL	0.9914	0.5453	0.3735	3.02	0.0662	6.52	1/982	1/7748
SNV	Breast	MAGI2_D107N_5	HLA-C05:01	IVDKNLRHYL	0.9998	0.9135	0.1775	131.26	0.2431	7.5	1/982	2/7748
SNV	Breast	NFKB2_S277F_5	HLA-C05:01	FGDFFPTDV	0.9995	0.9941	0.0919	89.52	0.212	43.97	1/982	1/7748
SNV	Breast	WIZ_E28K_9	HLA-A03:01	RLPGPAPRK	0.9984	0.7782	0.1865	2.99	0.0259	28.28	1/982	1/7748
SNV	Breast	CYFIP2_D805Y_7	HLA-A02:01	AMYKSLYQA	0.9821	0.5085	0.0449	9.1	0.1511	5.28	1/982	1/7748
SNV	Breast	CYFIP2_D805Y_3	HLA-B15:03	SLYQAISRF	0.878	0.7787	0.0876	2.41	0.0355	5.28	1/982	1/7748
SNV	Breast	KIAA1033_Q396E_7	HLA-A02:01	FLQQKAESL	0.9857	0.7447	0.363	8.31	0.1436	11.89	1/982	1/7748
SNV	Breast	NFASC_S693A_6	HLA-A02:01	AVLRLAPYV	0.9726	0.5358	0.4511	276.05	0.5592	9.72	1/982	1/7748
SNV	Breast	POLE_D529Y_10	HLA-B15:03	QEQEFNKLTY	0.8802	0.6652	1.1487	464.59	0.9281	5.81	1/982	1/7748
SNV	Breast	STXBP2_K82T_7	HLA-A02:01	LLSPTETSV	0.9954	0.6607	0.1218	8.01	0.1405	7.86	1/982	1/7748
SNV	Breast	STXBP2_K82T_8	HLA-A02:01	YLLSPTETSV	0.997	0.7329	0.1588	6.47	0.123	7.86	1/982	1/7748
SNV	Breast	TNNT3_R74H_1	HLA-B15:03	HQNKDLMEL	0.9082	0.7594	0.19	7.51	0.1391	1.15	1/982	1/7748
SNV	Breast	YES1_V254L_5	HLA-A02:01	KLTTLCPTV	0.9907	0.7508	0.0914	124.75	0.4266	17.38	1/982	1/7748
SNV	Breast	ALOX12_E103D_7	HLA-B27:05	YRWVQGDDI	0.9908	0.5206	0.729	101.12	0.4088	1.26	1/982	1/7748
SNV	Breast	ALOX12_E103D_7	HLA-B27:05	YRWVQGDDIL	0.9992	0.5842	0.9802	167.23	0.4647	1.26	1/982	1/7748
SNV	Breast	AUTS2_D779Y_7	HLA-A02:01	SMFGHKYGPSV	0.9665	0.6216	1.1832	260.11	0.5495	15.04	1/982	1/7748
SNV	Breast	CTCF_H284N_8	HLA-B27:05	RRSNLDRNM	0.9991	0.9016	0.3465	72.17	0.3724	21.96	1/982	1/7748
SNV	Breast	IGDCC3_E766K_9	HLA-A02:01	GLMEGKTTKA	0.9661	0.5094	0.8511	110.11	0.4052	5.87	1/982	1/7748
SNV	Breast	LASP1_D217A_9	HLA-A02:01	AVYDYSAAA	0.9551	0.5019	0.2808	27.08	0.2431	56.18	1/982	1/7748
SNV	Breast	P3H3_R204W_7	HLA-B27:05	RRMSGVWPQSF	1	0.5646	0.0009	2.2	0.0711	10.82	1/982	1/7748
SNV	Breast	RAD54L_M442T_4	HLA-B08:01	EGKTSVSSL	0.9338	0.5284	0.552	92.72	0.1631	2.25	1/982	1/7748
SNV	Breast	RASGRP2_V498I_6	HLA-B27:05	GRMGFIHNF	0.9999	0.9135	0.0297	1.03	0.0022	1.73	1/982	1/7748
SNV	Breast	RASGRP2_V498I_6	HLA-B27:05	GRMGFIHNFQ	0.9996	0.8291	0.7392	3.84	0.1211	1.73	1/982	1/7748
SNV	Breast	RASGRP2_V498I_6	HLA-C07:01	GRMGFIHNF	0.9993	0.6879	0.0096	6.19	0.0114	1.73	1/982	1/7748
SNV	Breast	SEC24C_D705N_3	HLA-A02:01	YVNVATLSV	0.9871	0.6537	0.2625	313.32	0.5797	10.06	1/982	1/7748
SNV	Breast	SEC24C_D705N_9	HLA-A02:01	FLFPNQYVNV	0.999	0.7058	0.1909	2.73	0.0592	10.06	1/982	1/7748
SNV	Breast	SEC24C_D705N_3	HLA-C02:02	YVNVATLSV	0.9157	0.9702	0.4452	22.22	0.0517	10.06	1/982	1/7748
SNV	Breast	STAU1_N347T_1	HLA-A02:01	TMLEILGFKV	0.9977	0.6098	0.2524	274.22	0.5581	37.25	1/982	1/7748
SNV	Breast	STAU1_N347T_7	HLA-B27:05	KRNAAETML	0.9978	0.897	0.4429	7.29	0.1689	37.25	1/982	1/7748
SNV	Breast	STAU1_N347T_7	HLA-C07:01	KRNAAETML	0.9956	0.7716	0.1215	246.31	0.1236	37.25	1/982	1/7748
SNV	Breast	TBCD_G696S_3	HLA-B27:05	FRSDTVIDGW	0.9965	0.6803	0.6893	121.96	0.4296	7.93	1/982	1/7748
SNV	Breast	CDK7_D220H_9	HLA-A02:01	FLPGDSDLHQL	0.9962	0.6078	0.6242	25.96	0.2395	38.7	1/982	1/7748
SNV	Breast	MRPL32_S11L_1	HLA-B51:01	LPWSAARGV	0.994	0.7976	0.0751	8.13	0.0582	24.81	1/982	1/7748
SNV	Breast	MS4A6A_L220V_6	HLA-B51:01	FPGSVVFL	0.9915	0.5404	0.0907	74.67	0.2068	26.89	1/982	1/7748
SNV	Breast	PHTF2_H604Y_8	HLA-C07:01	ARKSEVPYF	0.9941	0.6995	0.0296	144.22	0.1037	12.2	1/982	1/7748
SNV	Breast	PIK3IP1_G185E_4	HLA-B51:01	IAIEAGII	0.9973	0.611	0.1814	40.77	0.1616	55.94	1/982	1/7748
SNV	Breast	PIK3IP1_G185E_4	HLA-B51:01	IAIEAGIIL	0.9022	0.5069	0.0704	129.62	0.2549	55.94	1/982	1/7748
SNV	Breast	AP3B1_H616Y_10	HLA-B44:03	LESPFKDRDY	0.9947	0.7232	0.1714	279.09	0.3631	21.77	1/982	1/7748
SNV	Breast	CAND1_S558L_1	HLA-C04:01	LFDATPYI	0.9999	0.6776	0.0765	79.26	0.068	19.5	1/982	1/7748
SNV	Breast	CAND1_S558L_2	HLA-C04:01	SLFDATPYI	0.902	0.7265	1.1844	437.31	0.1449	19.5	1/982	1/7748
SNV	Breast	CEP72_D107G_7	HLA-B44:03	TELVDVGFRL	0.9876	0.842	0.2537	89.41	0.2751	1.79	1/982	1/7748
SNV	Breast	DSC2_T539I_3	HLA-B44:03	AEIIKNGIY	0.9991	0.5847	0.0734	2.69	0.054	12.06	1/982	1/7748
SNV	Breast	DSC2_T539I_5	HLA-B44:03	REAEIIKNGI	0.9816	0.7143	0.3942	258.2	0.357	12.06	1/982	1/7748
SNV	Breast	DSC2_T539I_5	HLA-B44:03	REAEIIKNGIY	0.9999	0.6321	0.1353	2.66	0.0533	12.06	1/982	1/7748
SNV	Breast	GINM1_V72M_7	HLA-C04:01	TYESGQMYV	0.9651	0.7635	0.1935	81.25	0.0688	45.97	1/982	1/7748
SNV	Breast	GRID1_R176H_6	HLA-B44:03	SEYDIHGL	0.998	0.7593	0.4348	187.46	0.3319	1.39	1/982	1/7748
SNV	Breast	GRID1_R176H_6	HLA-B44:03	SEYDIHGLQSF	1	0.9248	0.0275	2.57	0.0516	1.39	1/982	1/7748
SNV	Breast	GRID1_R176H_5	HLA-C04:01	EYDIHGLQSF	0.9999	0.6802	0.1424	326.7	0.1241	1.39	1/982	1/7748
SNV	Breast	ITGA6_F954Y_11	HLA-B44:03	TEKQIDDNRKY	0.9997	0.8298	0.1021	3.52	0.0711	62.35	1/982	1/7748
SNV	Breast	LONRF2_G680W_9	HLA-B44:03	KEQILSHFW	0.9995	0.9263	0.0059	1.3	0.0103	3.76	1/982	1/7748
SNV	Breast	LONRF2_G680W_10	HLA-B44:03	MKEQILSHFW	0.933	0.9731	1.4005	113.18	0.2927	3.76	1/982	1/7748
SNV	Breast	LONRF2_G680W_9	HLA-B44:02	KEQILSHFWV	0.8714	0.5888	1.4518	357.78	0.3715	3.76	1/982	1/7748
SNV	Breast	MEN1_S160F_5	HLA-C04:01	KLDSFGVAF	0.9994	0.8626	0.0506	46.17	0.0542	16.12	1/982	1/7748
SNV	Breast	OLFML3_L241V_9	HLA-B44:03	GEMENTLQV	0.9153	0.9764	0.2387	14.05	0.1405	161.53	1/982	1/7748
SNV	Breast	OLFML3_L241V_7	HLA-B44:03	MENTLQVIKF	0.9997	0.7602	0.0541	22.93	0.1652	161.53	1/982	1/7748
SNV	Breast	P2RY1_I216F_9	HLA-B44:03	DEYLRSYFF	0.9807	0.9151	0.1494	30.21	0.1822	1.73	1/982	1/7748
SNV	Breast	PES1_A404T_8	HLA-A11:01	WVFDSVNTR	0.7617	0.5878	0.3424	164.06	0.3804	21.94	1/982	1/7748
SNV	Breast	PES1_A404T_7	HLA-C04:01	VFDSVNTRL	0.9998	0.7519	0.0011	1.28	0.0018	21.94	1/982	2/7748
SNV	Breast	PES1_A404T_8	HLA-C04:01	WVFDSVNTRL	0.9944	0.7888	1.2819	32.59	0.0465	21.94	1/982	2/7748
SNV	Breast	PES1_A404T_7	HLA-C04:01	VFDSVNTRLL	0.9991	0.735	0.035	8.04	0.0186	21.94	1/982	2/7748
SNV	Breast	PES1_A404T_7	HLA-C04:01	VFDSVNTRLLL	0.9999	0.7346	0.3415	159.38	0.0877	21.94	1/982	2/7748
SNV	Breast	PIK3CA_C420R_4	HLA-B44:03	EEHRPLAW	0.9998	0.9264	0.131	197.13	0.3358	8.14	2/982	2/7748
SNV	Breast	PIK3CA_C420R_5	HLA-B44:03	KEEHRPLAW	0.9928	0.957	0.0604	4.58	0.0834	8.14	2/982	2/7748
SNV	Breast	PIK3CA_C420R_6	HLA-B44:03	AKEEHRPLAW	0.7691	0.9618	0.9303	34.41	0.1932	8.14	2/982	2/7748
SNV	Breast	PIK3CA_C420R_6	HLA-B44:02	AKEEHRPLAW	0.7539	0.5347	0.8605	5.21	0.0828	8.14	2/982	4/7748
SNV	Breast	PKN2_R898W_7	HLA-C07:01	LRRNPEWRL	0.9417	0.7617	0.1841	430.74	0.1641	16.94	1/982	1/7748
SNV	Breast	PRKD2_D759E_2	HLA-B44:03	NEQIQNAAF	0.9962	0.8766	0.1218	6.63	0.1005	13.27	1/982	1/7748
SNV	Breast	PSEN2_A252V_8	HLA-A24:02	KYLPEWSVW	0.9965	0.8365	0.0589	1.4	0.019	8.73	1/982	1/7748
SNV	Breast	PSEN2_A252V_8	HLA-A24:02	KYLPEWSVWV	0.9711	0.9016	0.4018	387.29	0.6522	8.73	1/982	1/7748
SNV	Breast	SCFD1_L225I_8	HLA-B44:03	AEMVAVKI	0.9996	0.9753	0.6639	413.51	0.394	15.6	1/982	1/7748
SNV	Breast	SLK_N454Y_4	HLA-B44:03	KENYIMITL	0.9811	0.9454	0.1945	29.55	0.1803	32.22	1/982	1/7748
SNV	Breast	TMEM167B_H56Q_4	HLA-C07:01	TRLQAAVAI	0.9977	0.7197	0.1285	173.85	0.1106	25.07	1/982	1/7748
SNV	Breast	UBE4A_I1051N_7	HLA-B44:03	TELKEKNQRW	0.9986	0.9666	0.0135	2.13	0.0411	17.06	1/982	1/7748
SNV	Breast	ZBTB24_S559Y_10	HLA-B44:03	QEIQLLVTDY	0.9982	0.9197	0.0488	4.88	0.0864	5.02	1/982	1/7748
SNV	Breast	ABCB7_A186V_9	HLA-C08:02	LSDAPNTVV	0.9995	0.9902	0.0116	34.29	0.0412	15.88	1/982	1/7748
SNV	Breast	CLDN5_C54R_10	HLA-A68:01	TTWKGLWMSR	0.993	0.7616	0.1679	62.18	0.3166	1.15	1/982	1/7748
SNV	Breast	CRY2_I68M_9	HLA-C08:02	FAASSSVGM	0.7466	0.9879	0.3855	411.34	0.1261	4.33	1/982	1/7748
SNV	Breast	PDXDC1_F166L_6	HLA-C08:02	FVVDGLNVL	0.9935	0.9847	0.1849	69.68	0.0566	26.04	1/982	1/7748
SNV	Breast	MX1_M479V_6	HLA-C15:02	HTVTDVVRL	0.9993	0.8098	0.3236	76.65	0.3457	9.86	1/982	1/7748
SNV	Breast	MX1_M479V_4	HLA-C15:02	VTDVVRLAF	0.8889	0.8317	0.3553	53.38	0.2831	9.86	1/982	1/7748
SNV	Breast	PASK_E1138K_5	HLA-C15:02	IVIAKDFTI	0.9992	0.86	0.9026	41.09	0.2428	1.78	1/982	1/7748
SNV	Breast	PASK_E1138K_3	HLA-C15:02	IAKDFTIKL	0.9973	0.8862	0.031	8.14	0.0718	1.78	1/982	1/7748
SNV	Breast	SPEN_D3442V_8	HLA-C15:02	VSVSMKPVL	0.9984	0.8541	0.4851	454.59	0.7469	23.39	1/982	1/7748
SNV	Breast	SPEN_D3442V_6	HLA-C15:02	VSMKPVLPV	0.9997	0.8837	0.0189	12.97	0.1029	23.39	1/982	1/7748
SNV	Breast	STAM2_M332I_1	HLA-C15:02	IIDEKLEEI	0.9956	0.9365	0.0779	64.23	0.3134	15.62	1/982	1/7748
SNV	Breast	ZNF568_M486I_6	HLA-B57:01	KAFIQISNL	0.9881	0.9314	0.6925	143.85	0.3176	3.15	1/982	1/7748
SNV	Breast	ZNF568_M486I_6	HLA-C15:02	KAFIQISNL	0.999	0.9267	0.0535	22.21	0.157	3.15	1/982	1/7748
SNV	Breast	EXOC3_M193V_8	HLA-A02:01	ELAKQLWVV	0.9542	0.7756	0.4195	247.39	0.5414	14.59	1/982	1/7748
SNV	Breast	MAP2K4_S184L_2	HLA-A02:01	TLFDKFYKYV	0.9973	0.5208	0.3076	6.8	0.1268	17.86	1/982	2/7748
SNV	Breast	MAP2K4_S184L_2	HLA-C07:02	TLFDKFYKY	0.8131	0.9051	1.5602	129.89	0.2218	17.86	1/982	1/7748
SNV	Breast	PODXL_T502P_8	HLA-A02:01	RLTEELQPV	0.9988	0.7268	0.0844	2.99	0.0655	24.84	1/982	1/7748
SNV	Breast	SGSM1_A996S_6	HLA-A02:01	ILDDESLAF	0.9049	0.6123	0.8011	221.54	0.5235	1.8	1/982	1/7748
SNV	Breast	SUSD2_G597A_8	HLA-B39:01	THTHGLLATL	0.9993	0.9772	0.1186	265.11	0.2489	13.56	1/982	1/7748
SNV	Breast	FRY_P323T_4	HLA-A02:01	ILVTVAAAV	0.9806	0.8279	0.1021	54.78	0.3141	7.4	1/982	1/7748
SNV	Breast	GTF2H3_W229R_8	HLA-A02:01	SLLQYLLRV	0.9897	0.6601	0.0338	1.84	0.0404	14.09	1/982	1/7748
SNV	Breast	PERP_G154S_8	HLA-B15:01	YIYNWAYSF	0.9882	0.875	0.0774	216.72	0.3818	184.19	1/982	1/7748
SNV	Breast	PERP_G154S_8	HLA-C03:03	YIYNWAYSF	0.9873	0.9892	1.2628	190.93	0.355	184.19	1/982	1/7748
SNV	Breast	PERP_G154S_2	HLA-C03:03	YSFGWAATI	0.9985	0.9911	0.0057	5.21	0.0515	184.19	1/982	1/7748
SNV	Breast	PERP_G154S_2	HLA-C02:02	YSFGWAATI	0.7957	0.993	0.0123	22.78	0.0528	184.19	1/982	1/7748
SNV	Breast	SF3B1_K700E_8	HLA-A02:01	GLVDEQQEV	0.9975	0.5095	0.4121	1.78	0.0385	96.18	4/982	4/7748
SNV	Breast	SLC8B1_S537N_1	HLA-A02:01	NLVFSLVSV	0.9734	0.5391	0.132	26.19	0.2402	10.49	1/982	1/7748
SNV	Breast	WNK3_G260E_6	HLA-B15:01	RQILKELQF	0.9993	0.8344	0.071	8.05	0.0778	1.49	1/982	1/7748
SNV	Breast	WWP2_T483M_2	HLA-B15:01	GMKQGSPGAY	0.9998	0.8887	0.2004	5.22	0.053	15.96	1/982	1/7748
SNV	Breast	AMER1_G470D_7	HLA-B35:01	APNSDEDYY	0.9607	0.7717	0.2339	4.96	0.0902	1.68	1/982	1/7748
SNV	Breast	AMER1_G470D_8	HLA-B35:01	SAPNSDEDYY	0.9013	0.7159	1.1939	478.71	0.4835	1.68	1/982	1/7748
SNV	Breast	AMER1_G470D_1	HLA-C04:01	DYYDSTTPGF	0.9787	0.6938	1.4945	199.04	0.1009	1.68	1/982	1/7748
SNV	Breast	DCLRE1C_S362P_2	HLA-B35:01	SPQSTEPKY	0.9829	0.6117	0.0511	2.64	0.0515	4.75	1/982	1/7748
SNV	Breast	KIF13A_M200L_9	HLA-C04:01	SFEDIESLL	0.9959	0.7654	0.0129	7.54	0.0176	11.6	1/982	1/7748
SNV	Breast	KIF27_R1144W_2	HLA-C04:01	EWDNMVREL	0.9984	0.7838	0.0423	29.4	0.0439	2.16	1/982	1/7748
SNV	Breast	MYH14_V596A_6	HLA-B35:01	QADFSALHY	0.9515	0.9028	0.1903	23.16	0.1858	25.37	1/982	1/7748
SNV	Breast	SMCHD1_V837F_5	HLA-B35:01	LPFRFGVPF	0.9971	0.9151	0.0081	5.84	0.097	8.38	1/982	1/7748
SNV	Breast	STAU2_N127K_7	HLA-B35:01	FPNYRAKY	0.9967	0.84	0.7955	99.76	0.3072	30.9	1/982	1/7748
SNV	Breast	STAU2_N127K_9	HLA-B35:01	KPFPNYRAKY	0.9628	0.6721	0.3634	46.05	0.238	30.9	1/982	1/7748
SNV	Breast	TTLL5_A575T_8	HLA-B35:01	YPVITQPTEM	0.998	0.8763	0.2064	5.22	0.0923	8.96	1/982	1/7748
SNV	Breast	NUP155_E774D_7	HLA-B44:03	HEAQLSDKI	0.9565	0.847	0.218	120.72	0.2975	10.57	1/982	1/7748
SNV	Breast	PIK3CA_E545K_5	HLA-B44:03	SEITKQEKDF	0.9989	0.8114	0.0872	10.32	0.1253	8.12	6/982	18/7748
SNV	Breast	SEPT11_R137C_7	HLA-B44:03	EELKIKCSLF	0.9979	0.9267	0.1353	57.57	0.2405	23.07	1/982	1/7748
SNV	Breast	WIPF1_P309L_9	HLA-C03:03	SASSQAPPL	0.9981	0.9909	0.0338	59.27	0.2197	14.21	1/982	1/7748
SNV	Breast	NUAK2_G237V_2	HLA-B35:01	AVFGLSNLY	0.9747	0.9075	0.298	55.8	0.2538	3.55	1/982	1/7748
SNV	Breast	ANO5_S372L_3	HLA-C12:03	LALKFSHLF	0.9209	0.989	0.1674	129.87	0.592	1.4	1/982	1/7748
SNV	Breast	CROCC_E791Q_7	HLA-B18:01	EEQERLQEL	0.9915	0.8864	0.197	276.03	0.2204	7.46	1/982	1/7748
SNV	Breast	CSF3R_L595V_3	HLA-C12:03	ASVYHIHLM	0.9597	0.9666	0.1878	67.22	0.4266	7.25	1/982	1/7748
SNV	Breast	CYP20A1_S134F_1	HLA-A02:01	FLKSNFALL	0.9804	0.6365	0.1445	44.27	0.2899	12.61	1/982	1/7748
SNV	Breast	CYP20A1_S134F_10	HLA-A02:01	KLYENGVTDFL	0.9988	0.5887	1.1607	48.5	0.2988	12.61	1/982	1/7748
SNV	Breast	CYP20A1_S134F_8	HLA-B18:01	YENGVTDF	0.9972	0.8379	0.2209	63.23	0.129	12.61	1/982	1/7748
SNV	Breast	CYP20A1_S134F_8	HLA-B18:01	YENGVTDFL	0.8379	0.8252	0.3316	132.95	0.1752	12.61	1/982	1/7748
SNV	Breast	CYP20A1_S134F_1	HLA-C12:03	FLKSNFALL	0.9906	0.9918	0.339	257.5	0.826	12.61	1/982	1/7748
SNV	Breast	DPP4_G260A_7	HLA-B07:02	VPYPKAAAV	0.9995	0.5179	0.024	1.72	0.0265	8.93	1/982	1/7748
SNV	Breast	DPP4_G260A_3	HLA-C12:03	KAAAVNPTV	0.9596	0.989	0.1004	24.31	0.2389	8.93	1/982	1/7748
SNV	Breast	DPP4_G260A_1	HLA-C12:03	AAVNPTVKF	0.8656	0.9774	0.0818	14.34	0.1684	8.93	1/982	1/7748
SNV	Breast	DUS3L_V394F_10	HLA-B18:01	VEVDFVDINF	0.8963	0.9261	0.0877	159.59	0.1857	13.37	1/982	1/7748
SNV	Breast	EPAS1_S55F_7	HLA-C07:02	SHLDKAFIM	0.8866	0.8636	0.2234	113.98	0.2077	116.2	1/982	1/7748
SNV	Breast	EPAS1_S55F_3	HLA-C12:03	KAFIMRLAI	0.7933	0.9868	0.3746	32.57	0.2929	116.2	1/982	1/7748
SNV	Breast	EPAS1_S55F_1	HLA-C12:03	FIMRLAISF	0.9853	0.9902	0.58	188.13	0.7096	116.2	1/982	1/7748
SNV	Breast	FANCE_V105I_5	HLA-C12:03	LLMAIRPSL	0.9978	0.9772	1.8644	174.34	0.6839	5.98	1/982	1/7748
SNV	Breast	GUCY1A2_L493F_9	HLA-B18:01	EEKKKTVDF	0.9313	0.7496	0.1296	216.29	0.2036	3.15	1/982	1/7748
SNV	Breast	GUCY1A2_L493F_5	HLA-C12:03	KTVDFLYSI	0.8947	0.9344	0.2116	32.86	0.2946	3.15	1/982	1/7748
SNV	Breast	KIF15_E1368K_4	HLA-A02:01	RLAKETEKL	0.9598	0.7726	0.5524	90.45	0.3786	7.73	1/982	1/7748
SNV	Breast	MAP3K13_T892M_9	HLA-A02:01	KLDDLLSQM	0.9949	0.7886	0.2414	3.08	0.0678	11.41	1/982	1/7748
SNV	Breast	MAP3K13_T892M_9	HLA-C12:03	KLDDLLSQM	0.9469	0.9824	0.6452	382.86	0.968	11.41	1/982	1/7748
SNV	Breast	MCTP2_D54E_8	HLA-A02:01	RLSLSVPEL	0.9891	0.7985	0.2808	21.23	0.2224	1.08	1/982	1/7748
SNV	Breast	MCTP2_D54E_6	HLA-A02:01	SLSVPELLEA	0.963	0.6389	1.0905	210.24	0.515	1.08	1/982	1/7748
SNV	Breast	NEK5_D366Y_9	HLA-B18:01	YDYYYAQLY	0.6021	0.8788	0.3795	70.85	0.1345	2.28	1/982	1/7748
SNV	Breast	NEK5_D366Y_7	HLA-C07:02	YYYAQLYML	0.5226	0.913	0.4417	6.22	0.0289	2.28	1/982	1/7748
SNV	Breast	PACS2_S271L_9	HLA-C12:03	KVSDEVLDL	0.8983	0.9782	0.5471	310.97	0.8905	17.35	1/982	1/7748
SNV	Breast	PARK2_V324F_11	HLA-A24:02	RYQQYGAEECF	0.9982	0.6922	0.4199	46.2	0.3577	3.19	1/982	1/7748
SNV	Breast	SPIN2B_Q231E_2	HLA-B18:01	HEVEAKPSV	0.9392	0.9509	0.0941	163.3	0.187	3.53	1/982	1/7748
SNV	Breast	SPIN2B_Q231E_2	HLA-B18:01	HEVEAKPSVY	0.9804	0.9654	0.0309	9.22	0.0606	3.53	1/982	1/7748
SNV	Breast	SPIN2B_Q231E_2	HLA-B18:01	HEVEAKPSVYF	0.9685	0.975	0.154	417.88	0.2488	3.53	1/982	1/7748
SNV	Breast	TOPBP1_H1261Y_1	HLA-B18:01	YEELKKQY	0.9982	0.8301	0.4467	209.13	0.2013	21.99	1/982	1/7748
SNV	Breast	TTC5_S435L_9	HLA-C12:03	SQAVATVAL	0.9955	0.9692	1.4264	136.09	0.6054	3.07	1/982	1/7748
SNV	Breast	WWC3_S434L_9	HLA-A24:02	PFSEPPGPLGF	0.9998	0.6685	0.4121	379.32	0.6486	53.39	1/982	1/7748
SNV	Breast	WWC3_S434L_7	HLA-B18:01	SEPPGPLGF	0.8889	0.9593	0.154	200.72	0.1988	53.39	1/982	1/7748
SNV	Breast	ABCA8_D1120N_2	HLA-C07:02	SNIPFIFTF	0.9093	0.9183	0.3874	272.65	0.3079	1.97	1/982	1/7748
SNV	Breast	ARSB_R327Q_8	HLA-A02:05	SLWEGGVQGV	0.9991	0.6889	0.2402	75.71	0.2242	4.26	1/982	1/7748
SNV	Breast	ARSB_R327Q_8	HLA-A02:01	SLWEGGVQGV	0.9989	0.7371	0.3914	1.51	0.0236	4.26	1/982	1/7748
SNV	Breast	AVPI1_S27L_2	HLA-A02:05	ALANIFQDA	0.9882	0.7089	0.5012	330.43	0.4272	8.95	1/982	1/7748
SNV	Breast	AVPI1_S27L_2	HLA-A02:01	ALANIFQDA	0.9879	0.6436	0.5905	339.39	0.5926	8.95	1/982	1/7748
SNV	Breast	BPTF_I1964M_11	HLA-B07:02	GPYGIRSEYCM	0.9986	0.5807	0.6119	42.11	0.1946	9.24	1/982	1/7748
SNV	Breast	CHD7_Y72C_6	HLA-C07:02	THFDHCNQY	0.7104	0.9108	0.0435	277.21	0.3104	3.83	1/982	2/7748
SNV	Breast	CHD8_S425I_5	HLA-A02:01	VLSAIEVAA	0.9852	0.6252	0.4794	265.09	0.5526	13.58	1/982	1/7748
SNV	Breast	CMYA5_P1231S_7	HLA-A02:01	KMEPQPSNV	0.983	0.5158	0.7085	363.16	0.6049	1.43	1/982	1/7748
SNV	Breast	COL22A1_P1489L_8	HLA-A02:05	YLLAQMPLA	0.9852	0.8509	0.1824	99.83	0.2499	1.03	1/982	1/7748
SNV	Breast	COL22A1_P1489L_8	HLA-A02:01	YLLAQMPLA	0.9935	0.6187	0.0449	2.47	0.055	1.03	1/982	1/7748
SNV	Breast	DZANK1_M200I_1	HLA-C07:02	IRIQRETDF	0.8377	0.9414	0.1834	52.28	0.1368	1.83	1/982	1/7748
SNV	Breast	EP300_S2008F_1	HLA-C07:02	FGMPRPAMM	0.9288	0.9878	0.4255	33.82	0.1052	22.69	1/982	1/7748
SNV	Breast	ERAL1_S185F_1	HLA-A02:05	FLLEDPWKS	0.9656	0.7945	0.6766	39.66	0.169	168.9	1/982	1/7748
SNV	Breast	ERAL1_S185F_1	HLA-A02:05	FLLEDPWKSM	0.9853	0.8637	0.9277	55.43	0.1956	168.9	1/982	1/7748
SNV	Breast	ERAL1_S185F_1	HLA-A02:01	FLLEDPWKS	0.9823	0.6735	0.4373	4.68	0.0994	168.9	1/982	1/7748
SNV	Breast	ERAL1_S185F_1	HLA-A02:01	FLLEDPWKSM	0.9911	0.7062	0.672	3.66	0.0769	168.9	1/982	1/7748
SNV	Breast	ERAL1_S185F_8	HLA-C07:02	KRHHLELFL	0.9351	0.9739	0.0343	225.26	0.2839	168.9	1/982	1/7748
SNV	Breast	ERBB2_A1160V_8	HLA-B40:02	REGPLPAV	1	0.6375	0.3364	65.82	0.3545	321.74	1/982	1/7748
SNV	Breast	ERBB2_A1160V_2	HLA-B07:02	AVRPAGATL	0.9992	0.8591	0.0361	1.61	0.0238	321.74	1/982	1/7748
SNV	Breast	ERBB2_A1160V_10	HLA-B07:02	SPREGPLPAV	0.9994	0.6004	0.0933	2.22	0.037	321.74	1/982	1/7748
SNV	Breast	ERBB2_A1160V_4	HLA-B07:02	LPAVRPAGATL	0.9999	0.7507	0.1218	1.84	0.0293	321.74	1/982	1/7748
SNV	Breast	LRG1_R113Q_8	HLA-A02:05	SLSPEFLQPV	0.9992	0.7048	0.086	364.7	0.4463	16.57	1/982	1/7748
SNV	Breast	LRG1_R113Q_3	HLA-A02:05	FLQPVPQLRV	0.9974	0.9639	0.3441	206.19	0.3502	16.57	1/982	1/7748
SNV	Breast	LRG1_R113Q_3	HLA-A02:01	FLQPVPQL	0.9962	0.8771	1.3046	51.82	0.307	16.57	1/982	1/7748
SNV	Breast	LRG1_R113Q_8	HLA-A02:01	SLSPEFLQPV	0.9986	0.7948	0.2355	41.19	0.2829	16.57	1/982	1/7748
SNV	Breast	LRG1_R113Q_3	HLA-A02:01	FLQPVPQLRV	0.9972	0.8778	0.4269	7.03	0.1296	16.57	1/982	1/7748
SNV	Breast	MAP3K5_E426K_6	HLA-C07:02	KAFESKPTL	0.9812	0.9671	0.3576	443.27	0.3797	10.3	1/982	1/7748
SNV	Breast	MED13_S2154L_2	HLA-A02:01	RLCLPIHFV	0.9862	0.8328	0.0931	294.16	0.5695	16.64	1/982	1/7748
SNV	Breast	MED13_S2154L_3	HLA-C07:02	RRLCLPIHF	0.9579	0.9842	0.052	108.59	0.2025	16.64	1/982	1/7748
SNV	Breast	MYO5B_E1610D_7	HLA-A02:05	QLIKIADGV	0.9925	0.5359	0.0915	157.6	0.3097	32.11	1/982	1/7748
SNV	Breast	NALCN_E422K_4	HLA-A02:05	YLAKVAFTV	0.9989	0.7332	0.0037	2.83	0.0199	1.33	1/982	1/7748
SNV	Breast	NALCN_E422K_4	HLA-A02:01	YLAKVAFTV	0.9986	0.7163	0.0001	1.25	0.0128	1.33	1/982	1/7748
SNV	Breast	NALCN_E422K_4	HLA-A02:01	YLAKVAFTVL	0.9917	0.6717	0.6069	356.88	0.6011	1.33	1/982	1/7748
SNV	Breast	NFYC_D57N_8	HLA-A02:01	KIMKLDENV	0.9713	0.6486	0.6216	269.81	0.5554	7.96	1/982	1/7748
SNV	Breast	NFYC_D57N_5	HLA-A02:01	KLDENVKMI	0.9877	0.756	0.6436	4.16	0.0897	7.96	1/982	1/7748
SNV	Breast	NINL_Q1182H_4	HLA-A02:05	MLTHSLEEV	0.9979	0.9108	0.027	60.43	0.2032	1.56	1/982	1/7748
SNV	Breast	NINL_Q1182H_4	HLA-A02:01	MLTHSLEEV	0.9964	0.7906	0.0638	12.75	0.1784	1.56	1/982	1/7748
SNV	Breast	PHYHIP_K60N_8	HLA-C07:02	KHRDVPTNL	0.6092	0.9004	0.2626	255.28	0.2986	1.85	1/982	1/7748
SNV	Breast	PKP4_G431E_7	HLA-C07:02	YRSPNHETV	0.8476	0.9738	0.0969	10.58	0.0515	11.48	1/982	1/7748
SNV	Breast	PRR14_E565Q_3	HLA-A02:05	RLQELDALL	0.9879	0.612	0.4935	17.42	0.1095	10.62	1/982	1/7748
SNV	Breast	PRR14_E565Q_3	HLA-A02:01	RLQELDALL	0.9935	0.6267	0.365	4.61	0.0982	10.62	1/982	1/7748
SNV	Breast	PRR14_E565Q_3	HLA-A02:01	RLQELDALLL	0.9954	0.6275	0.8398	237.71	0.5349	10.62	1/982	1/7748
SNV	Breast	RANGAP1_Q17E_10	HLA-A02:01	KLAETLAKTEV	0.9981	0.8934	0.8915	109.76	0.4046	32.97	1/982	1/7748
SNV	Breast	RNF20_H431Y_3	HLA-A02:01	SLYKKLRTEV	0.9146	0.6197	1.1939	107.21	0.4006	15.21	1/982	1/7748
SNV	Breast	SLC12A9_G557V_9	HLA-A02:05	RLANQLKKV	0.993	0.6061	0.761	318.85	0.4203	4.86	1/982	1/7748
SNV	Breast	SLC12A9_G557V_9	HLA-A02:01	RLANQLKKV	0.9897	0.6515	0.5114	79.99	0.3628	4.86	1/982	1/7748
SNV	Breast	SPTLC2_E455Q_6	HLA-C07:02	RRRLKQMGF	0.7904	0.9219	0.4666	137.12	0.2276	54	1/982	1/7748
SNV	Breast	TMEM59L_D315N_6	HLA-A02:05	FMMEPNWPL	0.9964	0.5849	0.0013	2.01	0.0105	4.13	1/982	1/7748
SNV	Breast	TMEM59L_D315N_6	HLA-C07:02	FMMEPNWPL	0.7772	0.9604	0.77	347.42	0.3437	4.13	1/982	1/7748
SNV	Breast	TRIP11_E1099K_6	HLA-C07:02	YAMERKKVF	0.8575	0.9402	0.484	131.8	0.2233	6.56	1/982	1/7748
SNV	Breast	VPS13B_E3620K_4	HLA-C07:02	SVFKRGPIF	0.6414	0.755	1.2769	231.95	0.2873	5.29	1/982	1/7748
SNV	Breast	XAB2_T517R_5	HLA-C07:02	LRIARPQIV	0.7838	0.9425	0.3785	189.55	0.2636	21.06	1/982	1/7748
SNV	Breast	XAB2_T517R_2	HLA-C07:02	ARPQIVINY	0.7826	0.9619	0.0447	23.8	0.0851	21.06	1/982	1/7748
SNV	Breast	ZNF554_S127Y_7	HLA-A02:05	FQPVASYHL	0.9763	0.6847	0.5012	87.32	0.2374	1.59	1/982	1/7748
SNV	Breast	ZNF554_S127Y_1	HLA-C07:02	YHLEQREAL	0.8227	0.962	0.1528	157.53	0.2425	1.59	1/982	1/7748
SNV	Breast	SKIDA1_G503R_7	HLA-C03:03	AAFEDARRL	0.9988	0.9889	0.1386	7.63	0.0669	2.65	1/982	1/7748
SNV	Breast	SLC16A2_R227H_6	HLA-C07:02	HYFQRHLGL	0.7161	0.9388	0.021	2.46	0.0075	22.62	1/982	1/7748
SNV	Breast	SYNE1_R8110H_6	HLA-C07:02	HFIGQHEEF	0.7938	0.9683	0.0676	41.45	0.1184	1.54	1/982	1/7748
SNV	Breast	TUFM_V271I_3	HLA-C03:03	YSIPGRGTV	0.9885	0.9198	0.0126	3.65	0.037	218.78	1/982	1/7748
SNV	Breast	TUFM_V271I_3	HLA-C03:03	YSIPGRGTVV	0.9781	0.9133	0.3014	216.57	0.3722	218.78	1/982	1/7748
SNV	Breast	ZNF808_N206S_2	HLA-C03:03	SSNYGNNPL	0.9953	0.988	0.4456	317.16	0.4289	2.08	1/982	1/7748
SNV	Breast	TLR4_R804W_8	HLA-B44:03	WEDSVLGW	0.9984	0.9646	0.6441	496.36	0.4119	5.88	1/982	1/7748
SNV	Breast	TLR4_R804W_10	HLA-B44:03	LEWEDSVLGW	0.9992	0.9541	0.0452	5.72	0.0939	5.88	1/982	1/7748
SNV	Breast	ZBTB22_E223K_7	HLA-C16:01	FSSSSQKAF	0.791	0.9619	0.0454	84.72	0.3912	31.29	1/982	1/7748
SNV	Breast	EMILIN2_P901L_2	HLA-C03:04	ALVPSLVSF	0.9264	0.9888	0.489	313.43	0.427	5.99	1/982	1/7748
SNV	Breast	KPNA5_V441A_2	HLA-C03:04	IAQVALNGL	0.9976	0.9716	0.2527	294.81	0.4171	7.06	1/982	1/7748
SNV	Breast	POLE_R573W_9	HLA-B58:02	AAFDFLLQW	0.9983	0.9919	0.0004	22.99	0.0088	5.31	1/982	1/7748
SNV	Breast	SELP_L24F_9	HLA-C03:04	VVFGISQLF	0.9942	0.9859	0.3766	347.89	0.4439	3.69	1/982	1/7748
SNV	Breast	SP140_R824H_6	HLA-C03:04	FVQDMHLIF	0.9979	0.9815	0.1565	145.02	0.3173	1.58	1/982	1/7748
SNV	Breast	CDC27_E511K_5	HLA-B15:01	RAYFKLSEY	0.9996	0.8887	0.1491	13.94	0.1166	55.36	1/982	1/7748
SNV	Breast	IGLV8-61_V36M_2	HLA-A02:01	SMSPGGTVTL	0.9057	0.5969	0.4323	349.74	0.5975	3.97	1/982	1/7748
SNV	Breast	NOTCH2_S2153A_1	HLA-A02:01	ALESPHTYV	0.9739	0.7135	0.6314	129.2	0.4326	99.09	1/982	1/7748
SNV	Breast	PHEX_F678I_3	HLA-B15:01	ITITNNQLF	0.9734	0.8146	0.3211	249.88	0.4005	7.26	1/982	1/7748
SNV	Breast	DENND5B_P343A_7	HLA-A02:01	FLDAPVAYL	0.9974	0.85	0.0703	1.05	0.004	8.02	1/982	1/7748
SNV	Breast	DENND5B_P343A_7	HLA-A02:01	FLDAPVAYLM	0.9936	0.8553	0.5034	10.41	0.1619	8.02	1/982	1/7748
SNV	Breast	DENND5B_P343A_8	HLA-C07:02	HFLDAPVAY	0.6066	0.991	0.0862	12.45	0.0576	8.02	1/982	1/7748
SNV	Breast	DENND5B_P343A_7	HLA-C07:02	FLDAPVAYL	0.8171	0.9896	0.6388	277.96	0.3108	8.02	1/982	1/7748
SNV	Breast	DENND5B_P343A_7	HLA-C05:01	FLDAPVAY	0.9995	0.9948	0.494	380.91	0.369	8.02	1/982	1/7748
SNV	Breast	DENND5B_P343A_7	HLA-C05:01	FLDAPVAYL	0.9999	0.9897	0.0022	1.03	0.0013	8.02	1/982	1/7748
SNV	Breast	DENND5B_P343A_8	HLA-C05:01	HFLDAPVAYL	0.9991	0.9931	1.644	18.57	0.1198	8.02	1/982	1/7748
SNV	Breast	DENND5B_P343A_7	HLA-C05:01	FLDAPVAYLM	0.9999	0.9941	0.088	4.7	0.0538	8.02	1/982	1/7748
SNV	Breast	DNAH6_E742K_7	HLA-A02:01	FLDEIQKRI	0.996	0.5964	0.3693	1.58	0.0307	1.36	1/982	1/7748
SNV	Breast	DNAH6_E742K_7	HLA-C05:01	FLDEIQKRI	0.9999	0.9785	0.0234	1.3	0.01	1.36	1/982	1/7748
SNV	Breast	KIAA1161_T388M_2	HLA-A02:01	VMLWVHPFV	0.9921	0.6607	0.0177	409.95	0.6316	26.86	1/982	1/7748
SNV	Breast	KIAA1161_T388M_9	HLA-C07:02	LRDAGFRVM	0.9413	0.9805	0.0862	45.41	0.1244	26.86	1/982	1/7748
SNV	Breast	LMO4_P124L_2	HLA-C05:01	VLGDRFHYI	0.9776	0.7923	0.7431	474.76	0.3968	28.01	1/982	1/7748
SNV	Breast	PCDHB9_R536H_4	HLA-C05:01	ASDHGSPAL	0.9999	0.9704	0.0022	2.28	0.0303	4.73	1/982	1/7748
SNV	Breast	PTBP3_H432R_9	HLA-A31:01	VLRATLSKR	0.9452	0.5912	0.0599	31.87	0.1103	74.01	1/982	1/7748
SNV	Breast	PTBP3_H432R_10	HLA-A31:01	KVLRATLSKR	0.9904	0.5709	0.0929	120.2	0.2355	74.01	1/982	1/7748
SNV	Breast	RBPJ_L373P_4	HLA-C05:01	MLEPTGQNF	0.9962	0.9519	0.1324	23.79	0.1313	32.1	1/982	1/7748
SNV	Breast	SLC25A53_R150H_2	HLA-C07:02	AHFPSTFSI	0.7372	0.9776	0.3259	118.58	0.212	2.09	1/982	1/7748
SNV	Breast	SLC25A53_R150H_1	HLA-C07:02	HFPSTFSIL	0.6021	0.9616	0.3874	457.51	0.3843	2.09	1/982	1/7748
SNV	Breast	THOP1_G368R_1	HLA-A02:01	RLLGIYQEL	0.9968	0.7107	0.2333	3.2	0.0705	19.17	1/982	1/7748
SNV	Breast	CBFB_N104S_7	HLA-C15:02	KAPMILSGV	0.9955	0.92	0.5496	420.08	0.7247	26.42	1/982	1/7748
SNV	Breast	COL14A1_D650N_3	HLA-C15:02	SANEGLHKL	0.9991	0.8854	0.0241	7.09	0.0614	98.83	1/982	1/7748
SNV	Breast	MLXIPL_P813S_6	HLA-B08:01	LPALRSTV	0.9994	0.7277	0.5345	348.32	0.2882	8.76	1/982	1/7748
SNV	Breast	MLXIPL_P813S_6	HLA-B08:01	LPALRSTVL	0.9989	0.7933	0.0193	4.27	0.018	8.76	1/982	1/7748
SNV	Breast	MLXIPL_P813S_6	HLA-B51:01	LPALRSTV	0.9986	0.6296	0.418	42.62	0.1651	8.76	1/982	1/7748
SNV	Breast	MLXIPL_P813S_3	HLA-C07:01	LRSTVLNSL	0.9968	0.7025	0.0375	73.27	0.0766	8.76	1/982	1/7748
SNV	Breast	PLA2G6_C332F_7	HLA-C07:01	MRNRFDFAI	0.9942	0.5481	0.1663	148.67	0.1048	8.33	1/982	1/7748
SNV	Breast	PLA2G6_C332F_5	HLA-C07:01	NRFDFAIVL	0.999	0.5713	0.0278	4.12	0.0084	8.33	1/982	1/7748
SNV	Breast	PLA2G6_C332F_5	HLA-C07:01	NRFDFAIVLL	0.9994	0.5221	0.0851	191.62	0.1143	8.33	1/982	1/7748
SNV	Breast	PLA2G6_C332F_4	HLA-C15:02	RFDFAIVLL	0.8292	0.9162	0.7759	463.26	0.7522	8.33	1/982	1/7748
SNV	Breast	SDK2_S1055F_6	HLA-B08:01	EPDARFMEV	0.9428	0.518	0.3955	355.34	0.2903	7.9	1/982	1/7748
SNV	Breast	SDK2_S1055F_3	HLA-C07:01	ARFMEVPDL	0.9955	0.7298	0.0925	292.39	0.1355	7.9	1/982	1/7748
SNV	Breast	XPO5_L116V_2	HLA-C15:02	AVSRIVVEM	0.9984	0.8897	0.3809	78.02	0.3489	23.27	1/982	1/7748
SNV	Breast	CDK20_P225L_7	HLA-A02:01	ILGTPNLQV	0.9896	0.7205	0.365	12.77	0.1785	3.97	1/982	1/7748
SNV	Breast	CDK20_P225L_5	HLA-B57:01	GTPNLQVW	0.9987	0.992	0.9439	119.56	0.2954	3.97	1/982	1/7748
SNV	Breast	CDK20_P225L_6	HLA-B57:01	LGTPNLQVW	0.999	0.996	0.103	38.27	0.2113	3.97	1/982	1/7748
SNV	Breast	CDK20_P225L_8	HLA-B57:01	RILGTPNLQVW	0.9999	0.9903	0.0503	418.61	0.4663	3.97	1/982	1/7748
SNV	Breast	CDK20_P225L_9	HLA-C07:02	LRILGTPNL	0.8628	0.943	0.1925	18.61	0.0742	3.97	1/982	1/7748
SNV	Breast	CFAP43_P1091L_2	HLA-A02:01	KLWHKAKEL	0.9742	0.8496	0.6314	257.8	0.5481	1.79	1/982	1/7748
SNV	Breast	CFAP43_P1091L_8	HLA-B57:01	TAHKHIKLW	0.9995	0.9696	0.0211	1.96	0.0242	1.79	1/982	1/7748
SNV	Breast	CFAP43_P1091L_9	HLA-B57:01	ITAHKHIKLW	0.9999	0.9109	0.0892	5.51	0.0686	1.79	1/982	1/7748
SNV	Breast	DOCK6_V1938I_6	HLA-A02:01	VLQGSIGPTV	0.9847	0.506	0.3398	88.48	0.3758	7.7	1/982	1/7748
SNV	Breast	MEGF8_R385W_8	HLA-B57:01	QVIPAGGW	0.994	0.9891	1.4631	308.61	0.4261	10.46	1/982	1/7748
SNV	Breast	PCLO_D3179H_8	HLA-A02:01	SLTAETIHSV	0.9949	0.596	0.2146	4.26	0.0917	2.26	1/982	1/7748
SNV	Breast	TBC1D8_S1091L_8	HLA-A02:01	SLEHILALL	0.9741	0.6078	0.2775	102.74	0.395	29.74	1/982	1/7748
SNV	Breast	TBC1D8_S1091L_1	HLA-A02:01	LLLTEQSLV	0.9933	0.5022	0.1526	103.14	0.3955	29.74	1/982	1/7748
SNV	Breast	TBC1D8_S1091L_9	HLA-C07:02	VSLEHILAL	0.9826	0.9759	0.7595	359.95	0.3489	29.74	1/982	1/7748
SNV	Breast	ZNF765_H187R_1	HLA-B57:01	RISNDYGNNF	0.9857	0.7786	1.2865	68.31	0.2555	3.9	1/982	1/7748
SNV	Breast	ASTE1_H265N_8	HLA-A32:01	GLLNWLSNF	0.9202	0.9553	0.3287	191.35	0.1966	6.86	1/982	1/7748
SNV	Breast	ATP13A2_A787V_5	HLA-C16:01	RGQPVSLEF	0.8667	0.9869	0.5566	23.06	0.1836	19.47	1/982	1/7748
SNV	Breast	BTG1_D107N_8	HLA-B44:03	SELTLWVNPY	0.9982	0.9675	0.131	157.74	0.3183	84.95	1/982	1/7748
SNV	Breast	CCT2_D66H_5	HLA-C16:01	MVTNHGATI	0.6003	0.927	0.7019	114.84	0.4538	69.31	1/982	1/7748
SNV	Breast	CCT2_D66H_4	HLA-C16:01	VTNHGATIL	0.7847	0.9578	0.21	53.67	0.2988	69.31	1/982	1/7748
SNV	Breast	CCT3_T512M_9	HLA-C16:01	QTYKTAVEM	0.9837	0.9675	0.1509	19.06	0.1651	317.39	1/982	1/7748
SNV	Breast	CCT3_T512M_6	HLA-C16:01	KTAVEMAVL	0.9715	0.941	0.8003	83.07	0.3872	317.39	1/982	1/7748
SNV	Breast	CCT3_T512M_5	HLA-C16:01	TAVEMAVLL	0.9707	0.9612	0.2036	91.8	0.4076	317.39	1/982	1/7748
SNV	Breast	CDC25B_R352Q_7	HLA-B08:01	VQNKRRQSV	0.9783	0.5236	0.0776	62.63	0.1335	144.38	1/982	1/7748
SNV	Breast	CUL3_E429K_7	HLA-B44:03	QEKDVFKRY	0.9997	0.9468	0.0187	1.2	0.0071	11.61	1/982	1/7748
SNV	Breast	CUL3_E429K_8	HLA-B44:03	MQEKDVFKRY	0.985	0.8795	0.9046	5.58	0.0928	11.61	1/982	1/7748
SNV	Breast	CUL3_E429K_7	HLA-B44:03	QEKDVFKRYY	0.9997	0.8968	0.0655	1.95	0.0367	11.61	1/982	1/7748
SNV	Breast	DMXL2_G2282V_3	HLA-B44:03	TEVNQFTGM	0.9905	0.9791	0.232	69.49	0.2564	6.73	1/982	1/7748
SNV	Breast	DMXL2_G2282V_3	HLA-B44:03	TEVNQFTGMAY	0.9993	0.9844	0.07	102.27	0.2851	6.73	1/982	1/7748
SNV	Breast	DMXL2_G2282V_6	HLA-C16:01	YSQTEVNQF	0.8452	0.9533	0.0515	132.92	0.4839	6.73	1/982	1/7748
SNV	Breast	DOCK5_A1797V_5	HLA-C16:01	LTPKVTRTL	0.8864	0.9749	0.1668	90.66	0.405	2.72	1/982	1/7748
SNV	Breast	DOT1L_G246S_2	HLA-C16:01	FSPEVDHQL	0.9615	0.9428	0.1765	322.97	0.7145	6.5	1/982	1/7748
SNV	Breast	ERBB4_P172R_6	HLA-C07:01	VRNPWRSNL	0.9962	0.7222	0.0334	7.6	0.0136	1.07	1/982	1/7748
SNV	Breast	ERGIC1_K202M_7	HLA-B44:03	YEDKSGMQRY	0.9968	0.5521	0.126	6.23	0.0976	84.15	1/982	1/7748
SNV	Breast	FAM107B_H124Y_1	HLA-C16:01	YASIPRPSI	0.9571	0.9729	0.1509	6.49	0.0649	51.17	1/982	1/7748
SNV	Breast	FN3KRP_L59S_6	HLA-B44:03	GEMASSTAI	0.9711	0.9863	0.3081	19.65	0.1573	26.7	1/982	1/7748
SNV	Breast	HERC6_P533S_7	HLA-B44:03	QESSLNSLI	0.962	0.9346	0.1633	132.77	0.3048	86.21	1/982	1/7748
SNV	Breast	HERC6_P533S_5	HLA-C16:01	SSLNSLIQM	0.9074	0.9807	0.1765	50.44	0.2902	86.21	1/982	1/7748
SNV	Breast	IL1RN_R117K_4	HLA-B44:03	SENKKQDKRF	0.9912	0.8282	0.1534	29.79	0.181	9.15	1/982	1/7748
SNV	Breast	IPO8_E546K_8	HLA-A32:01	HVRPIMQKL	0.9526	0.8762	1.0768	370.25	0.2547	12.36	1/982	1/7748
SNV	Breast	IPO8_E546K_8	HLA-C16:01	HVRPIMQKL	0.7543	0.9772	0.4056	15.11	0.1401	12.36	1/982	1/7748
SNV	Breast	IRF9_P41T_7	HLA-A32:01	KTMFRITW	0.9973	0.9617	1.6928	396.6	0.2617	13.53	1/982	1/7748
SNV	Breast	ITSN1_I85M_6	HLA-B08:01	IAMKLMKL	0.9943	0.5651	1.527	145.12	0.2052	14.36	1/982	1/7748
SNV	Breast	ITSN1_I85M_7	HLA-C16:01	SIAMKLMKL	0.8677	0.9794	1.863	247.07	0.6368	14.36	1/982	1/7748
SNV	Breast	LRWD1_R498W_9	HLA-B44:03	SEGSEASGW	0.9973	0.9705	0.0229	1.58	0.0259	5.87	1/982	1/7748
SNV	Breast	LRWD1_R498W_1	HLA-C07:01	WRVDGLAFV	0.9172	0.6443	0.3812	191.77	0.1143	5.87	1/982	1/7748
SNV	Breast	MAP3K10_G346R_1	HLA-C07:01	RRPDFGSIL	0.9878	0.5806	0.0786	66.02	0.0739	1.55	1/982	1/7748
SNV	Breast	MARK3_D671E_4	HLA-C16:01	SSMEPGDMM	0.7107	0.9713	0.3205	46.47	0.2787	27.19	1/982	1/7748
SNV	Breast	MTOR_R1612P_7	HLA-A32:01	KLVPERPEI	0.9684	0.9737	0.6386	316.78	0.2403	17.44	1/982	1/7748
SNV	Breast	MTOR_R1612P_1	HLA-B44:03	PEIIRQIWW	0.9383	0.9728	0.89	475.13	0.407	17.44	1/982	1/7748
SNV	Breast	NUP210_Q1566P_6	HLA-A32:01	HLHPIPTSF	0.9877	0.9876	0.0348	2.2	0.0086	20.12	1/982	1/7748
SNV	Breast	NUP210_Q1566P_6	HLA-B08:01	HLHPIPTSF	0.553	0.7154	0.159	295.68	0.2707	20.12	1/982	1/7748
SNV	Breast	NUP210_Q1566P_6	HLA-C07:01	HLHPIPTSF	0.8551	0.8501	0.3445	150.93	0.1054	20.12	1/982	1/7748
SNV	Breast	NUP210_Q1566P_6	HLA-C16:01	HLHPIPTSF	0.9536	0.9883	0.0198	4	0.0357	20.12	1/982	1/7748
SNV	Breast	PPA1_V187M_3	HLA-A32:01	ATMDWFRRY	0.9319	0.9336	0.1175	16.73	0.0536	202.87	1/982	1/7748
SNV	Breast	PPP1R12B_R643Q_1	HLA-C07:01	QRSTQGVTL	0.9981	0.6344	0.0949	82.1	0.0796	2.7	1/982	2/7748
SNV	Breast	PTGFRN_D724H_6	HLA-A32:01	ALDPDHMAF	0.8818	0.983	0.9394	119.53	0.1568	61.67	1/982	1/7748
SNV	Breast	PTGFRN_D724H_6	HLA-C16:01	ALDPDHMAF	0.9432	0.9902	0.372	40.31	0.2589	61.67	1/982	1/7748
SNV	Breast	PTGFRN_D724H_7	HLA-C16:01	AALDPDHMAF	0.9966	0.9901	0.1364	235.67	0.623	61.67	1/982	1/7748
SNV	Breast	RBM15_Q899R_2	HLA-C07:01	KRAAGVISL	0.9989	0.6997	0.0118	18.88	0.0364	12.98	1/982	1/7748
SNV	Breast	RBM15_Q899R_1	HLA-C16:01	RAAGVISL	0.9988	0.9846	0.6563	15.23	0.141	12.98	1/982	1/7748
SNV	Breast	SEMA3C_A207V_8	HLA-C16:01	RSLTKRNVV	0.8279	0.9736	1.5738	334.43	0.7244	47.71	1/982	1/7748
SNV	Breast	SNX7_E284K_8	HLA-B44:03	EEREYFDKM	0.994	0.9339	0.2205	376.61	0.3867	53.02	1/982	1/7748
SNV	Breast	SNX7_E284K_6	HLA-B44:03	REYFDKMKEY	0.9997	0.9051	0.07	1.79	0.0328	53.02	1/982	1/7748
SNV	Breast	STEAP2_L386S_2	HLA-C16:01	ASNWREFSF	0.8737	0.9886	0.372	254.13	0.645	2.89	1/982	1/7748
SNV	Breast	TLR7_L601V_8	HLA-B08:01	NLKVLQKVM	0.987	0.6674	0.1881	287.32	0.2676	1.49	1/982	1/7748
SNV	Breast	TRAPPC4_K108M_3	HLA-B44:03	NEMLMLASM	0.9944	0.9455	0.1945	208.94	0.3404	31.95	1/982	1/7748
SNV	Breast	TRIP11_D1918N_4	HLA-C07:01	RRTNVNPFL	0.9947	0.6152	0.0592	86.74	0.0815	38.5	1/982	1/7748
SNV	Breast	VCAN_M2799T_1	HLA-B44:03	TEGSNPPYY	0.9877	0.9324	0.1001	11.89	0.1323	5.27	1/982	1/7748
SNV	Breast	KLHL4_G483R_2	HLA-C07:02	GRRDGLKTL	0.7626	0.9617	0.1925	95.29	0.1895	3.5	1/982	1/7748
SNV	Breast	MAP2K4_D186G_4	HLA-B35:01	TSFGKFYKY	0.9902	0.7962	0.291	243.33	0.3985	14.57	1/982	1/7748
SNV	Breast	PLCG1_R1252H_1	HLA-C07:02	HYQQPFEDF	0.5191	0.9785	0.0638	165.83	0.2481	37.85	1/982	1/7748
SNV	Breast	SNAPC1_E27K_4	HLA-C07:02	VRFKDFTEL	0.9238	0.9805	0.0158	8.72	0.0412	9.77	1/982	1/7748
SNV	Breast	AGMAT_R238W_9	HLA-C05:01	TLDPYRYNW	0.968	0.9145	1.4953	438.19	0.3867	3.46	1/982	1/7748
SNV	Breast	ARHGAP24_M655I_3	HLA-B44:03	QEITKQKIEY	0.9996	0.9148	0.0425	3.16	0.0637	3.68	1/982	1/7748
SNV	Breast	CABIN1_A443T_7	HLA-B44:03	YEVQSETKL	0.9637	0.9427	0.1802	135.81	0.3066	21.7	1/982	1/7748
SNV	Breast	HACE1_Q774H_8	HLA-A02:01	FIPPSLIHL	0.9905	0.579	0.1021	13.05	0.1805	3.78	1/982	1/7748
SNV	Breast	HACE1_Q774H_1	HLA-A02:01	HLFDEYELEL	0.9977	0.5655	0.4738	3.81	0.0788	3.78	1/982	1/7748
SNV	Breast	HACE1_Q774H_1	HLA-A02:01	HLFDEYELELL	0.9995	0.542	0.8398	240.99	0.5371	3.78	1/982	1/7748
SNV	Breast	HACE1_Q774H_8	HLA-C04:01	FIPPSLIHL	0.6525	0.7175	0.1424	485.57	0.1527	3.78	1/982	1/7748
SNV	Breast	HACE1_Q774H_1	HLA-C04:01	HLFDEYELEL	0.9985	0.8037	0.7091	181.09	0.0946	3.78	1/982	1/7748
SNV	Breast	HACE1_Q774H_8	HLA-C05:01	FIPPSLIHL	0.6512	0.9681	0.0711	28.1	0.1389	3.78	1/982	1/7748
SNV	Breast	HACE1_Q774H_1	HLA-C05:01	HLFDEYELEL	0.9996	0.94	0.4723	120.83	0.2363	3.78	1/982	1/7748
SNV	Breast	HPS6_D351Y_5	HLA-A02:01	VLSTYRVHL	0.9611	0.7367	0.1881	180.33	0.4896	30.33	1/982	1/7748
SNV	Breast	HPS6_D351Y_9	HLA-B44:03	LERKVLSTY	0.9933	0.904	0.0563	26.26	0.1722	30.33	1/982	1/7748
SNV	Breast	MAP2K4_V290F_4	HLA-C05:01	RSDFWSLGI	0.9998	0.9229	0.2409	36.11	0.1506	33.41	1/982	1/7748
SNV	Breast	SLC1A3_G308V_7	HLA-B44:03	VEMEDMVVI	0.9375	0.9412	0.2736	103.54	0.2861	6.33	1/982	1/7748
SNV	Breast	USP38_I275M_2	HLA-A02:01	MMDWLSWPL	0.9847	0.6654	0.0245	335.45	0.5907	19.86	1/982	1/7748
SNV	Breast	USP38_I275M_3	HLA-A02:01	RMMDWLSWPL	0.995	0.6876	0.0238	220.57	0.5228	19.86	1/982	1/7748
SNV	Breast	ZBTB39_G161S_5	HLA-B44:03	GELRSGGDY	0.9944	0.9633	0.2938	267.89	0.3599	7.2	1/982	1/7748
SNV	Breast	C3AR1_H81Y_2	HLA-A24:02	AYLALQGQW	0.9949	0.8441	0.1311	11.97	0.2311	9.27	1/982	1/7748
SNV	Breast	C3AR1_H81Y_9	HLA-B35:01	LSLPFSLAY	0.9913	0.8195	0.037	53.06	0.2493	9.27	1/982	1/7748
SNV	Breast	CPXM1_L497F_9	HLA-B35:01	IPFVLSANF	0.9965	0.8888	0.0275	4.68	0.0867	56.74	1/982	1/7748
SNV	Breast	HARS_D316N_5	HLA-B35:01	FGIDNKISF	0.9983	0.8426	0.0416	46.02	0.2379	25.23	1/982	1/7748
SNV	Breast	HARS_G355S_8	HLA-B40:01	GEEPLGVSSV	0.9804	0.6909	0.2201	22.83	0.3142	25.23	1/982	1/7748
SNV	Breast	PDE8A_E495V_6	HLA-B35:01	RAMENVEY	0.9834	0.9154	1.759	424	0.4682	6.67	1/982	1/7748
SNV	Breast	TMEM87B_F395L_4	HLA-C06:02	YRHLKNTL	0.9503	0.9954	0.2984	243.66	0.143	31.41	1/982	1/7748
SNV	Breast	TMEM87B_F395L_4	HLA-C06:02	YRHLKNTLIF	0.9403	0.9923	1.1429	169.95	0.1227	31.41	1/982	1/7748
SNV	Breast	PPM1L_D230A_8	HLA-B35:01	NAIPLSHAH	0.979	0.6222	0.295	135.44	0.3385	1.87	1/982	1/7748
SNV	Breast	PPM1L_D230A_6	HLA-B35:01	IPLSHAHKPY	0.9858	0.6779	0.182	38.32	0.2232	1.87	1/982	1/7748
SNV	Breast	PPM1L_D230A_3	HLA-C07:02	SHAHKPYQL	0.7143	0.9378	0.172	200.03	0.2699	1.87	1/982	1/7748
SNV	Breast	C5_S1316F_9	HLA-B15:01	RLSMDIDVF	0.9926	0.8378	0.3244	36.17	0.1861	2.21	1/982	1/7748
SNV	Breast	C5_S1316F_8	HLA-B15:01	LSMDIDVFY	0.9878	0.7649	0.3756	347.2	0.4564	2.21	1/982	1/7748
SNV	Breast	C5_S1316F_9	HLA-B15:01	RLSMDIDVFY	0.9983	0.775	0.5336	100.85	0.2873	2.21	1/982	1/7748
SNV	Breast	CAMKMT_S72L_10	HLA-C07:02	RRFESFNLFL	0.9929	0.9723	0.0573	190.48	0.2642	2.33	1/982	1/7748
SNV	Breast	CAMKMT_S72L_9	HLA-C04:01	RFESFNLFL	0.9684	0.8159	0.1251	16.4	0.033	2.33	1/982	1/7748
SNV	Breast	CASQ2_D200H_4	HLA-A03:01	ATFHKGVAKK	0.9978	0.5122	0.0809	2.25	0.018	2.14	1/982	1/7748
SNV	Breast	CNTRL_D1839H_7	HLA-A02:01	KLQQELHQL	0.9938	0.7062	0.2458	6.74	0.1261	9.37	1/982	1/7748
SNV	Breast	GTF3C1_F410L_3	HLA-C07:02	QRLKVVKGF	0.8804	0.896	0.1884	292.73	0.3184	16.94	1/982	1/7748
SNV	Breast	HIF1A_P805A_9	HLA-C04:01	SYDCEVNAAI	0.9987	0.8278	0.1496	251.37	0.1118	30.8	1/982	1/7748
SNV	Breast	HIST2H2BF_V99M_1	HLA-C07:02	MRLLLPGEL	0.8721	0.9667	0.1449	63.62	0.154	1.26	1/982	1/7748
SNV	Breast	IBTK_S1148F_9	HLA-B15:01	KSHLGKTVF	0.9982	0.7552	0.2281	115.26	0.2996	18.45	1/982	1/7748
SNV	Breast	IGSF3_S685W_3	HLA-C07:02	SKWKRTLTL	0.8518	0.935	0.1184	122.92	0.2158	20.5	1/982	1/7748
SNV	Breast	KCNMA1_H529Y_2	HLA-C07:02	YYNKAHLL	0.9591	0.8637	0.3259	475.13	0.3899	3.38	1/982	1/7748
SNV	Breast	KCNMA1_H529Y_3	HLA-C07:02	QYYNKAHLL	0.588	0.9427	0.0756	3.95	0.014	3.38	1/982	1/7748
SNV	Breast	KIF13A_L1180F_4	HLA-A02:01	FLDFNADDL	0.9668	0.5959	0.568	65.23	0.3366	13.82	1/982	1/7748
SNV	Breast	LATS1_E957Q_8	HLA-A02:01	FLAQTPLQT	0.9734	0.8166	0.3941	68.64	0.3431	9.98	1/982	1/7748
SNV	Breast	LATS1_E957Q_6	HLA-B15:01	AQTPLQTQM	0.9988	0.9362	0.1914	42.04	0.1993	9.98	1/982	1/7748
SNV	Breast	LMBRD1_L54V_9	HLA-A02:01	STITAIFSV	0.9627	0.5104	0.0804	41.64	0.284	45.73	1/982	1/7748
SNV	Breast	LMBRD1_L54V_5	HLA-A02:01	AIFSVAIAL	0.8792	0.5392	0.354	60.47	0.3268	45.73	1/982	1/7748
SNV	Breast	METTL2A_E71Q_2	HLA-B15:01	YQINAHKY	0.9998	0.7753	0.5596	19.81	0.1404	7.05	1/982	1/7748
SNV	Breast	METTL2A_E71Q_2	HLA-B15:01	YQINAHKYW	0.945	0.6349	1.144	414.25	0.4864	7.05	1/982	1/7748
SNV	Breast	MFAP1_S81F_1	HLA-C07:02	FSDPRLRRL	0.8293	0.9411	0.3785	480.11	0.3914	35.72	1/982	1/7748
SNV	Breast	MFAP1_S81F_1	HLA-C04:01	FSDPRLRRL	0.9999	0.8932	0.0096	264.99	0.1143	35.72	1/982	1/7748
SNV	Breast	MYLK_D952N_6	HLA-B07:02	SPQQVNFRSVL	0.9998	0.514	0.2404	9.31	0.1077	7.8	1/982	1/7748
SNV	Breast	MYLK_D952N_9	HLA-B15:01	KVHSPQQVNF	0.9996	0.8335	0.5363	320.16	0.4426	7.8	1/982	1/7748
SNV	Breast	NUFIP1_M225I_9	HLA-C07:02	WRNMHAPGI	0.7844	0.9603	0.9331	423.15	0.3728	4.71	1/982	1/7748
SNV	Breast	OXR1_I817M_2	HLA-A02:01	FMKGDMDSL	0.9781	0.521	0.2333	63.54	0.3332	8.73	1/982	1/7748
SNV	Breast	SLC5A3_V49L_10	HLA-A02:01	FLAGRSMTWL	0.9871	0.6155	0.2625	342.75	0.5942	3.57	1/982	1/7748
SNV	Breast	SMC5_E799K_6	HLA-B15:01	QLRLTKQHF	0.9976	0.7423	0.2545	58.96	0.2357	12.28	1/982	1/7748
SNV	Breast	SRCIN1_R745K_3	HLA-B15:01	IQKDVSHNH	0.9988	0.8604	0.6244	377.42	0.4706	1.63	1/982	1/7748
SNV	Breast	SUMO2_D26N_3	HLA-B15:01	GQNGSVVQF	0.9998	0.858	0.1024	2.02	0.0126	88.9	1/982	1/7748
SNV	Breast	SYNJ1_R739I_6	HLA-B15:01	SQVKEINEDF	0.9986	0.8593	0.5136	33.54	0.1795	3.83	1/982	1/7748
SNV	Breast	TBC1D8B_H221Y_8	HLA-A02:01	VILTESIYV	0.9955	0.5048	0.3346	30.28	0.2529	1.78	1/982	1/7748
SNV	Breast	UGP2_L393M_7	HLA-B07:02	VPRSRFMPV	0.9988	0.5797	0.0165	11.03	0.1244	33.47	1/982	1/7748
SNV	Breast	ZBTB43_L51V_3	HLA-B15:01	AVVAASSPY	0.9953	0.8446	0.0525	9.54	0.0905	5.01	1/982	1/7748
SNV	Breast	ZBTB43_L51V_2	HLA-B15:01	VVAASSPYF	0.9765	0.8805	0.1781	28.27	0.1664	5.01	1/982	1/7748
SNV	Breast	ZKSCAN2_E772D_6	HLA-B15:01	MTHHKDNPY	0.9931	0.8187	0.0896	476.04	0.511	2.03	1/982	1/7748
SNV	Breast	GULP1_F111L_7	HLA-C07:02	KTDKRILTF	0.9832	0.9668	0.3336	317.61	0.3305	2.41	1/982	1/7748
SNV	Breast	GULP1_F111L_7	HLA-C05:01	KTDKRILTF	0.9997	0.9169	0.1324	4.48	0.0515	2.41	1/982	1/7748
SNV	Breast	EIF5A2_P151H_9	HLA-B18:01	EEYAVAIKH	0.9948	0.816	0.1235	24.32	0.0896	1.34	1/982	1/7748
SNV	Breast	ERCC5_N842I_7	HLA-C07:01	QYVDFHIQL	0.7966	0.7441	0.5258	412.43	0.1611	8.54	1/982	1/7748
SNV	Breast	IQSEC2_S412L_9	HLA-C07:01	AYFEGKPAL	0.5212	0.6858	0.3565	143.14	0.1034	4.75	1/982	1/7748
SNV	Breast	MUC5B_S3492F_8	HLA-B18:01	TEPSTVTF	0.9871	0.9557	0.6946	379.33	0.2422	1.78	1/982	1/7748
SNV	Breast	SRGAP1_G586R_3	HLA-C07:01	FRRLENPLF	0.9866	0.5342	0.0925	94.73	0.085	1.03	1/982	1/7748
SNV	Breast	ARFGEF2_E676K_3	HLA-C15:02	SVKDIAQFL	0.9983	0.6759	0.2449	49.76	0.2725	168.05	1/982	1/7748
SNV	Breast	BTN3A1_S69T_2	HLA-C15:02	VTSSLRQVV	0.9995	0.67	0.1913	174.83	0.4932	3.66	1/982	1/7748
SNV	Breast	BTN3A2_S69T_2	HLA-C15:02	VTSSLRQVV	0.9995	0.67	0.1913	174.83	0.4932	1.28	1/982	1/7748
SNV	Breast	CPM_K309E_7	HLA-C15:02	SLIEYIEQV	0.9893	0.8727	0.4851	169.13	0.4873	4.7	1/982	1/7748
SNV	Breast	CPM_K309E_3	HLA-C15:02	YIEQVHLGV	0.9928	0.8236	0.8217	183.89	0.5027	4.7	1/982	1/7748
SNV	Breast	HIVEP2_G635V_7	HLA-B35:01	SPGDRVVY	0.9584	0.5624	0.6815	372.79	0.452	5.59	1/982	1/7748
SNV	Breast	SEMA4F_A656S_2	HLA-C15:02	RSHTVGAGL	0.9963	0.9489	0.0779	18.95	0.1407	6.37	1/982	1/7748
SNV	Breast	ACER2_S236L_7	HLA-C07:02	AYFDAALEI	0.5717	0.9549	0.0926	6.4	0.03	3.33	1/982	1/7748
SNV	Breast	ALDH5A1_I132M_9	HLA-C07:02	LRKWYNLMM	0.8963	0.9405	0.0899	307.83	0.3259	10.92	1/982	1/7748
SNV	Breast	ANAPC1_L1406P_4	HLA-A31:01	FLLPRTLAR	0.9738	0.9497	0.1035	165.25	0.2733	4.71	1/982	1/7748
SNV	Breast	ANAPC1_L1406P_2	HLA-B07:02	LPRTLARCL	0.9987	0.5242	0.0316	16.29	0.1445	4.71	1/982	1/7748
SNV	Breast	CUL7_L1671P_6	HLA-B07:02	GPNPPPTFHTL	0.9999	0.5927	0.0958	27.62	0.1726	26.99	1/982	1/7748
SNV	Breast	FGFRL1_R148H_1	HLA-A31:01	HFTQPSKMRR	0.9575	0.7055	1.045	229.83	0.3123	9.14	1/982	1/7748
SNV	Breast	FGFRL1_R148H_3	HLA-B07:02	RPHFTQPSKM	0.9978	0.5935	0.1069	7.52	0.0934	9.14	1/982	1/7748
SNV	Breast	FUT10_C15R_2	HLA-C07:02	LRVTATVFL	0.9457	0.8842	0.1481	72.79	0.1651	4.72	1/982	1/7748
SNV	Breast	KCNH3_V79I_1	HLA-C07:02	IRQQIRKAL	0.9209	0.8327	0.1834	43.76	0.1219	2.07	1/982	1/7748
SNV	Breast	KIF22_H114R_9	HLA-A31:01	GSVQPILRR	0.9555	0.7558	0.4701	98.1	0.2076	19.46	1/982	1/7748
SNV	Breast	LAMA4_Q1071R_5	HLA-C07:02	GKFGRVTRF	0.769	0.951	0.3636	299.78	0.3219	7.54	1/982	1/7748
SNV	Breast	MCU_R93W_7	HLA-A31:01	SVRLPSWRER	0.9797	0.6134	0.6206	78.85	0.1847	7.45	1/982	1/7748
SNV	Breast	MTOR_Q1241R_5	HLA-C07:02	LRSGRGDAL	0.7697	0.9628	0.3064	247.83	0.2951	13.61	1/982	1/7748
SNV	Breast	NBEA_T639I_5	HLA-C07:02	RRVGIVLQL	0.9754	0.956	0.0133	5.65	0.0253	4.83	1/982	1/7748
SNV	Breast	NLGN3_L634M_9	HLA-C07:02	HLVPHLYNM	0.6297	0.9426	0.648	264.4	0.3034	1.85	1/982	1/7748
SNV	Breast	NR1D1_R204H_7	HLA-A31:01	MSRDAVHFGR	0.9753	0.5768	0.1005	47.64	0.1436	35.98	1/982	1/7748
SNV	Breast	NR1D1_R204H_3	HLA-A31:01	AVHFGRIPKR	0.9866	0.6826	0.426	37.95	0.1242	35.98	1/982	1/7748
SNV	Breast	PDE4DIP_R1852Q_6	HLA-A31:01	HLGEIQNLR	0.9114	0.6152	0.4599	370.82	0.3807	2.95	1/982	1/7748
SNV	Breast	PIAS4_R241H_5	HLA-C07:02	KRPCHPINL	0.8935	0.9734	0.106	74.47	0.167	11.45	1/982	1/7748
SNV	Breast	PTPRF_R891W_3	HLA-A31:01	IFWLAAKNR	0.9646	0.6785	0.6081	174.06	0.279	141.75	1/982	1/7748
SNV	Breast	QRICH2_R1229Q_8	HLA-A31:01	HQVSTLVQR	0.9356	0.5645	0.457	201.9	0.2952	3.31	1/982	1/7748
SNV	Breast	QRICH2_R1229Q_1	HLA-C07:02	QRYEQLQDM	0.9736	0.9715	0.072	78.27	0.1711	3.31	1/982	1/7748
SNV	Breast	RAB7A_L73V_3	HLA-A31:01	QSVGVAFYR	0.9813	0.5145	0.1219	13.18	0.0565	143.37	1/982	1/7748
SNV	Breast	RAB7A_L73V_5	HLA-C07:02	RFQSVGVAF	0.5528	0.9676	0.0638	68.15	0.1597	143.37	1/982	1/7748
SNV	Breast	RPS5_T126A_7	HLA-B07:02	GPREDSARI	0.9982	0.5759	0.368	26.61	0.1706	430.41	1/982	1/7748
SNV	Breast	RPS5_T126A_1	HLA-C07:02	ARIGRAGTV	0.7842	0.9166	0.3785	475.5	0.39	430.41	1/982	1/7748
SNV	Breast	RTTN_A1871S_5	HLA-A31:01	MSLLSVSRR	0.9654	0.5411	0.141	105.04	0.217	5.33	1/982	1/7748
SNV	Breast	SAMD15_F455Y_2	HLA-C07:02	KYRKEYYAL	0.6653	0.9477	1.5305	161.86	0.2455	1.69	1/982	1/7748
SNV	Breast	SLC2A9_A513T_8	HLA-C07:02	TYAEISQTF	0.8007	0.969	0.0099	4.55	0.0169	5.39	1/982	1/7748
SNV	Breast	SVIL_V875M_9	HLA-C07:02	KLIPFSPAM	0.7892	0.9617	0.972	152.82	0.2393	40.44	1/982	1/7748
SNV	Breast	UTRN_D2284N_7	HLA-C07:02	QRHPQLNYV	0.9548	0.9405	0.122	243.66	0.2931	34.57	1/982	1/7748
SNV	Breast	VPS52_S340N_8	HLA-A31:01	FSKPSLRNR	0.9591	0.505	0.3935	52.91	0.1524	24	1/982	1/7748
SNV	Breast	ZNF282_N616D_3	HLA-A31:01	KQDLLKHQR	0.9666	0.5697	0.6609	390.35	0.3881	18.62	1/982	1/7748
SNV	Breast	ACVR2A_L147V_9	HLA-A02:01	ILLYSLVPV	0.9859	0.5927	0.0389	108.45	0.4026	2.62	1/982	1/7748
SNV	Breast	ACVR2A_L147V_8	HLA-A02:01	LLYSLVPVM	0.972	0.6777	0.4121	182.04	0.4912	2.62	1/982	1/7748
SNV	Breast	ACVR2A_L147V_5	HLA-A02:01	SLVPVMLIA	0.9696	0.5406	0.3346	166.5	0.4759	2.62	1/982	1/7748
SNV	Breast	METRNL_A224T_1	HLA-B08:01	TIHLRVSRL	0.9988	0.6002	0.0843	7.58	0.0321	24.35	1/982	1/7748
SNV	Breast	METRNL_A224T_6	HLA-C07:02	ERQDSTIHL	0.8198	0.8752	0.2943	355.44	0.3471	24.35	1/982	1/7748
SNV	Breast	MYCL_A303V_1	HLA-A02:01	VLRDQVPTL	0.944	0.7329	0.3101	8.57	0.1462	1.31	1/982	1/7748
SNV	Breast	MYCL_A303V_8	HLA-B08:01	DLRSRFLVL	0.999	0.5137	0.0032	1.54	0.0037	1.31	1/982	3/7748
SNV	Breast	MYCL_A303V_1	HLA-B08:01	VLRDQVPTL	0.6972	0.6549	0.0776	33.78	0.0895	1.31	1/982	3/7748
SNV	Breast	WDR83OS_P34L_7	HLA-A02:01	ALDDPTLDYM	0.9856	0.5002	0.6165	62.66	0.3314	155.26	1/982	1/7748
SNV	Breast	AASDH_K114I_1	HLA-B15:01	IQINKFKSF	0.9994	0.7298	0.071	2.8	0.0246	11.49	1/982	1/7748
SNV	Breast	ABCD4_G296R_7	HLA-B15:01	AIPIFSRVY	0.9969	0.839	0.911	148.31	0.3323	13.41	1/982	1/7748
SNV	Breast	ABCD4_G296R_8	HLA-B15:01	IAIPIFSRVY	0.9997	0.8282	1.3653	315.83	0.4403	13.41	1/982	1/7748
SNV	Breast	ABCD4_G296R_8	HLA-C03:03	IAIPIFSRV	0.9965	0.9923	0.1883	16.23	0.1199	13.41	1/982	1/7748
SNV	Breast	ACAD9_A350T_4	HLA-A02:01	ALMTQKAYV	0.9952	0.5532	0.1409	8.49	0.1454	31.63	1/982	1/7748
SNV	Breast	ACIN1_P712L_8	HLA-B08:01	QARRLSQL	0.998	0.507	0.3714	57.23	0.1265	48.03	1/982	1/7748
SNV	Breast	ACO1_L239F_3	HLA-B15:01	MVFPQVIGY	0.9938	0.7016	0.0665	5.69	0.0561	26.72	1/982	1/7748
SNV	Breast	ACO1_L239F_4	HLA-B15:01	SMVFPQVIGY	0.9971	0.7835	0.3443	101.91	0.2882	26.72	1/982	1/7748
SNV	Breast	ACO1_L239F_5	HLA-C03:03	ISMVFPQVI	0.9846	0.983	0.4631	207.27	0.3662	26.72	1/982	1/7748
SNV	Breast	ACOT9_P93S_8	HLA-C07:01	SYIEVLLSL	0.6071	0.7801	0.414	249.02	0.124	13.58	1/982	1/7748
SNV	Breast	ADAM15_G712S_6	HLA-B15:01	VLVMLSASY	0.9981	0.9367	0.0896	31.6	0.1745	95.22	1/982	1/7748
SNV	Breast	ADAMTSL1_T1399M_2	HLA-B15:01	LMSPLGTQL	0.9939	0.8599	0.1255	446.32	0.4991	2.18	1/982	1/7748
SNV	Breast	ADAMTSL1_T1399M_2	HLA-C03:03	LMSPLGTQL	0.9983	0.9799	0.0861	28.5	0.1628	2.18	1/982	1/7748
SNV	Breast	AHCYL2_A272T_3	HLA-A02:01	ALTESGFPV	0.9956	0.6312	0.058	4.87	0.1023	13.57	1/982	1/7748
SNV	Breast	AIM1_E498A_2	HLA-C03:03	SANHKGCVL	0.9979	0.9877	0.1085	236.53	0.3843	33.48	1/982	1/7748
SNV	Breast	ALDH3A2_A196V_9	HLA-A02:01	AVGKIVMEV	0.983	0.6549	0.5138	60.53	0.327	35.92	1/982	1/7748
SNV	Breast	ALDH3A2_A196V_1	HLA-C03:03	VAAKHLTPV	0.9718	0.9866	0.0284	53.03	0.208	35.92	1/982	1/7748
SNV	Breast	ALG5_T30I_5	HLA-C03:03	VAFTIATKM	0.9989	0.9791	0.0425	6.25	0.0584	66.04	1/982	1/7748
SNV	Breast	ALG5_T30I_2	HLA-C03:03	TIATKMPAL	0.9989	0.9854	1.1106	281.08	0.4094	66.04	1/982	1/7748
SNV	Breast	ANKH_A98V_9	HLA-A02:01	MVVAGAIAV	0.972	0.693	0.2775	127.51	0.4303	23.6	1/982	2/7748
SNV	Breast	ANKH_A98V_8	HLA-A02:01	VVAGAIAVV	0.981	0.5779	0.4918	156.49	0.4653	23.6	1/982	2/7748
SNV	Breast	ANKH_A98V_1	HLA-B15:01	VVFHTLIAY	0.9966	0.8111	0.0559	92.87	0.2797	23.6	1/982	2/7748
SNV	Breast	ANKH_A98V_9	HLA-C03:03	MVVAGAIAV	0.957	0.9947	0.1586	43.28	0.1907	23.6	1/982	2/7748
SNV	Breast	ANKH_A98V_8	HLA-C03:03	VVAGAIAVV	0.9375	0.9907	0.7165	125.13	0.2978	23.6	1/982	2/7748
SNV	Breast	APC_G2145R_3	HLA-B08:01	SLRSPFHL	0.9851	0.5267	1.9385	233.8	0.2464	9.04	1/982	1/7748
SNV	Breast	APC_P2508L_3	HLA-A02:01	KLLPNLSPTI	0.9947	0.6162	0.3779	27.16	0.2433	9.04	1/982	1/7748
SNV	Breast	APOL1_V206I_3	HLA-A02:01	SLILLEPGM	0.7703	0.6457	0.912	485	0.6687	111.52	1/982	1/7748
SNV	Breast	APOL1_V206I_1	HLA-A02:01	ILLEPGMEL	0.9933	0.8115	0.4121	1.39	0.0167	111.52	1/982	1/7748
SNV	Breast	APOL1_V206I_2	HLA-A02:01	LILLEPGMEL	0.9482	0.5787	1.9395	52.03	0.3075	111.52	1/982	1/7748
SNV	Breast	APOL1_V206I_3	HLA-A02:01	SLILLEPGMEL	0.9857	0.6817	1.6549	50.02	0.3024	111.52	1/982	1/7748
SNV	Breast	APOL1_V206I_1	HLA-A02:01	ILLEPGMELGI	0.9905	0.733	0.783	313.75	0.5799	111.52	1/982	1/7748
SNV	Breast	APOL1_V206I_8	HLA-C03:03	FTEGGSLIL	0.9895	0.9975	0.1654	100.52	0.275	111.52	1/982	1/7748
SNV	Breast	APOL1_V206I_1	HLA-C03:03	ILLEPGMEL	0.9882	0.9948	0.1339	6.67	0.061	111.52	1/982	1/7748
SNV	Breast	ARID3B_R328Q_2	HLA-B15:01	RQPSYSSSLF	0.9998	0.7971	0.3304	115.5	0.2998	2.41	1/982	1/7748
SNV	Breast	ARID3B_R328Q_6	HLA-C07:01	RREGRQPSY	0.9508	0.6273	0.1878	314.22	0.1411	2.41	1/982	1/7748
SNV	Breast	ARMC2_R720S_7	HLA-B15:01	VQNNVHSF	0.9998	0.6832	1.0331	78.99	0.2648	2.56	1/982	1/7748
SNV	Breast	ARMC2_R720S_8	HLA-B15:01	IVQNNVHSF	0.9989	0.6061	0.1311	10.46	0.0993	2.56	1/982	1/7748
SNV	Breast	ARMC2_R720S_7	HLA-B15:01	VQNNVHSFM	0.9987	0.7239	0.3661	31.26	0.1736	2.56	1/982	1/7748
SNV	Breast	ARMC2_R720S_8	HLA-C03:03	IVQNNVHSF	0.9952	0.9633	0.2318	104.62	0.2792	2.56	1/982	1/7748
SNV	Breast	ARMC2_R720S_4	HLA-C03:03	NVHSFMMAL	0.9788	0.9796	0.1339	290.97	0.415	2.56	1/982	1/7748
SNV	Breast	ASXL1_A1016V_9	HLA-A02:01	HLTEDSSEV	0.975	0.5209	0.5055	46.33	0.2944	21.25	1/982	1/7748
SNV	Breast	ATN1_L1089P_4	HLA-B15:01	GSHPTRIPY	0.9987	0.7957	0.1113	40.64	0.1963	153.87	1/982	1/7748
SNV	Breast	ATN1_Q403R_7	HLA-C03:03	SPFPASRAL	0.987	0.9809	0.4094	33.53	0.1725	153.87	1/982	1/7748
SNV	Breast	ATP7B_L1373F_9	HLA-B15:01	SVVLSSLQF	0.9772	0.7358	0.1821	283.07	0.4217	3.72	1/982	1/7748
SNV	Breast	ATP7B_V734F_1	HLA-B15:01	FLATSIAY	0.9995	0.9462	1.6399	429.98	0.4927	3.72	1/982	1/7748
SNV	Breast	ATP7B_V734F_9	HLA-C03:03	SANMDVLIF	0.9952	0.988	0.815	436.98	0.4808	3.72	1/982	1/7748
SNV	Breast	ATP8A2_S858F_7	HLA-C03:03	YAIAQFFYL	0.9995	0.9774	0.0158	6.3	0.0587	1.04	1/982	1/7748
SNV	Breast	AUTS2_P1064L_7	HLA-B15:01	GERFPYLSF	0.9407	0.8827	0.6715	413.3	0.486	28.33	1/982	1/7748
SNV	Breast	BAP1_G431S_1	HLA-C03:03	SSADGQLSV	0.9832	0.9784	0.1228	78.7	0.2496	54.4	1/982	1/7748
SNV	Breast	BMP3_G268E_7	HLA-C07:01	HRNFPTETV	0.9725	0.8443	0.1476	75.52	0.0774	1.86	1/982	1/7748
SNV	Breast	BRCA2_S879F_6	HLA-C03:03	TVNPDFEEL	0.9996	0.992	0.118	46.01	0.1951	1.41	1/982	1/7748
SNV	Breast	C16orf54_L201F_3	HLA-C03:03	WGFQPRVTL	0.9975	0.9924	0.4271	18.29	0.1307	3.4	1/982	1/7748
SNV	Breast	C16orf62_C20Y_1	HLA-C07:01	YRLEAVPLEF	0.9997	0.69	0.0334	48.36	0.0642	20.27	1/982	1/7748
SNV	Breast	C16orf62_C20Y_4	HLA-C03:03	FASYRLEAV	0.991	0.9911	0.1883	278.5	0.4079	20.27	1/982	1/7748
SNV	Breast	C2orf49_R99K_4	HLA-C07:01	LRKKPLIVF	0.9926	0.7273	0.0949	164.94	0.1087	12.09	1/982	1/7748
SNV	Breast	C3orf58_L395F_7	HLA-B08:01	IAKDGRFEAL	0.9657	0.5936	0.4751	90.97	0.1617	12.22	1/982	1/7748
SNV	Breast	CACNA1C_G1426E_5	HLA-C03:03	YAVIEMQVF	0.9994	0.9883	0.2056	142.9	0.3153	4.59	1/982	1/7748
SNV	Breast	CASP9_A226V_8	HLA-C03:03	LAQQDHGVL	0.9981	0.9865	0.2525	165.79	0.3356	12.05	1/982	1/7748
SNV	Breast	CATSPERB_P541L_3	HLA-B08:01	LALQHTSL	0.9888	0.9475	0.5719	189.44	0.2282	1.39	1/982	1/7748
SNV	Breast	CATSPERB_P541L_4	HLA-B08:01	ALALQHTSL	0.9318	0.958	0.1708	134	0.1977	1.39	1/982	1/7748
SNV	Breast	CATSPERB_P541L_9	HLA-C03:03	MGFETALAL	0.9991	0.992	0.0597	2.96	0.0312	1.39	1/982	1/7748
SNV	Breast	CBLB_P973L_2	HLA-A02:01	FLPPVSPRL	0.9953	0.8898	0.0948	1.34	0.0149	8.87	1/982	1/7748
SNV	Breast	CBLB_P973L_2	HLA-C03:03	FLPPVSPRL	0.9893	0.9939	0.3118	26.94	0.1594	8.87	1/982	1/7748
SNV	Breast	CCRL2_G113D_3	HLA-C03:03	FVDLYSETF	0.9982	0.9878	0.1756	263.81	0.3993	6.99	1/982	2/7748
SNV	Breast	CDC42BPB_A91T_7	HLA-C03:03	GAFGEVTVV	0.9894	0.9975	0.3118	66.57	0.2319	62.79	1/982	1/7748
SNV	Breast	CDCA2_S818R_5	HLA-B08:01	KPMERSSV	0.9983	0.5094	0.7289	53.77	0.122	2.66	1/982	1/7748
SNV	Breast	CDCA2_S818R_5	HLA-B08:01	KPMERSSVV	0.9976	0.5839	0.0843	21.46	0.0666	2.66	1/982	1/7748
SNV	Breast	CDCA7_L132F_5	HLA-A02:01	MLAKFMSEL	0.9958	0.5958	0.0484	11.21	0.1678	7.98	1/982	1/7748
SNV	Breast	CDCA7_L132F_10	HLA-B15:01	KQNKAMLAKF	0.9998	0.8203	0.3175	44.74	0.2059	7.98	1/982	1/7748
SNV	Breast	CEBPZOS_R68K_7	HLA-C03:03	SGMYGIKEL	0.9987	0.9887	1.383	294.77	0.4171	31.48	1/982	1/7748
SNV	Breast	CHD9_A2648T_4	HLA-C03:03	AAATSATSV	0.9912	0.9902	0.15	37.93	0.181	7.59	1/982	1/7748
SNV	Breast	CHD9_P140S_8	HLA-B15:01	ISNQNGSSF	0.9972	0.9369	0.1275	15.85	0.1242	7.59	1/982	1/7748
SNV	Breast	CHD9_P140S_8	HLA-C03:03	ISNQNGSSF	0.9865	0.9927	0.3361	114.81	0.2888	7.59	1/982	1/7748
SNV	Breast	CLASP1_D907N_3	HLA-C03:03	FANPHSKRV	0.9837	0.9872	0.0631	55	0.2118	17.52	1/982	1/7748
SNV	Breast	CLEC16A_D828N_8	HLA-C07:01	QRIAALLNL	0.9997	0.6525	0.0786	28.18	0.0464	7.85	1/982	1/7748
SNV	Breast	COL12A1_K2650N_9	HLA-A02:01	TLFYGSFHNV	0.9967	0.6025	0.1395	59.7	0.3252	137.54	1/982	1/7748
SNV	Breast	COL14A1_T826I_8	HLA-C03:03	SVSAPGKIL	0.9923	0.9911	0.245	395.8	0.4648	50.23	1/982	1/7748
SNV	Breast	CPEB2_P373S_1	HLA-B08:01	SPKGYAFL	0.9944	0.5615	1.7009	195.65	0.231	20.11	1/982	1/7748
SNV	Breast	CPEB2_P373S_1	HLA-B08:01	SPKGYAFLL	0.8528	0.5752	0.1158	246.26	0.2512	20.11	1/982	1/7748
SNV	Breast	CPEB2_P373S_5	HLA-B15:01	KSYFSPKGY	0.9957	0.8448	0.4848	104.38	0.2904	20.11	1/982	1/7748
SNV	Breast	CPEB2_P373S_3	HLA-C07:01	YFSPKGYAF	0.8962	0.528	0.414	95.22	0.0852	20.11	1/982	1/7748
SNV	Breast	CPNE1_M416I_7	HLA-C03:03	TASQYFILL	0.9993	0.9752	0.1108	117.69	0.2914	103.3	1/982	1/7748
SNV	Breast	CPS1_G581D_9	HLA-B15:01	ALKAADTIDY	0.9998	0.9337	0.42	15.46	0.1227	1.12	1/982	1/7748
SNV	Breast	CRACR2A_R258K_8	HLA-B15:01	FLLKDTEKF	0.969	0.9553	0.1255	211.61	0.3787	6.06	1/982	1/7748
SNV	Breast	CRYBG3_S2822N_4	HLA-B08:01	TAFNRWKTI	0.9916	0.6086	0.1787	143.77	0.2043	4.67	1/982	1/7748
SNV	Breast	CSTF2T_M292I_9	HLA-C03:03	GAMQPQLGI	0.9223	0.9783	1.3435	466.37	0.4914	39.61	1/982	1/7748
SNV	Breast	CTR9_A747T_3	HLA-C03:03	HVTPSDTVL	0.9943	0.9819	0.2056	12.3	0.0956	40.5	1/982	1/7748
SNV	Breast	CUL5_A509T_9	HLA-B15:01	KVSEDLNQTF	0.9998	0.8182	0.4402	200.31	0.3715	16.22	1/982	1/7748
SNV	Breast	CYSLTR1_V238M_1	HLA-B15:01	MTAAFLVSF	0.9971	0.9475	0.022	484.4	0.5142	2.64	1/982	1/7748
SNV	Breast	CYSLTR1_V238M_9	HLA-C03:03	KAIGMIMVM	0.9987	0.9861	0.0616	3.15	0.0329	2.64	1/982	1/7748
SNV	Breast	DBR1_H226Y_1	HLA-A02:01	YLHVKFAAL	0.9822	0.693	0.1151	44.41	0.2903	21.88	1/982	1/7748
SNV	Breast	DBR1_H226Y_1	HLA-B08:01	YLHVKFAAL	0.9994	0.5786	0.0004	2.2	0.0068	21.88	1/982	1/7748
SNV	Breast	DCTN1_V840M_2	HLA-A02:01	AMLQEVAAA	0.9872	0.7162	0.2524	32.56	0.26	53.63	1/982	1/7748
SNV	Breast	DCTN1_V840M_1	HLA-A02:01	MLQEVAAAA	0.9936	0.6674	0.2414	69.08	0.344	53.63	1/982	1/7748
SNV	Breast	DDIAS_T632I_3	HLA-A02:01	KLIYPLETL	0.9845	0.8452	0.3346	8.23	0.1428	5.36	1/982	1/7748
SNV	Breast	DDX17_P723L_9	HLA-A02:01	YQYPPPPPL	0.9917	0.7753	0.3016	7.2	0.1316	139.49	1/982	1/7748
SNV	Breast	DDX17_P723L_9	HLA-B15:01	YQYPPPPPL	0.9976	0.9838	0.1255	40.16	0.1953	139.49	1/982	1/7748
SNV	Breast	DDX17_P723L_9	HLA-C07:01	YQYPPPPPL	0.9539	0.9031	0.0025	101.48	0.0877	139.49	1/982	1/7748
SNV	Breast	DDX17_P723L_9	HLA-C03:03	YQYPPPPPL	0.9966	0.9959	0.0861	1.99	0.0167	139.49	1/982	1/7748
SNV	Breast	DDX27_A505T_5	HLA-C07:01	QRLETLRRF	0.9992	0.6569	0.1053	129.47	0.0995	29.05	1/982	1/7748
SNV	Breast	DDX27_S212F_1	HLA-B15:01	FQYDENLSF	0.9997	0.9327	0.0024	1.66	0.008	29.05	1/982	1/7748
SNV	Breast	DDX27_S212F_1	HLA-C07:01	FQYDENLSF	0.9271	0.7065	0.0498	389.44	0.157	29.05	1/982	1/7748
SNV	Breast	DDX27_S212F_1	HLA-C03:03	FQYDENLSF	0.9913	0.9883	0.1553	18.31	0.1308	29.05	1/982	1/7748
SNV	Breast	DHRS4L2_T130I_5	HLA-A02:01	LMDVIEEV	0.9975	0.6501	1.579	69.58	0.3449	25.49	1/982	1/7748
SNV	Breast	DHRS4L2_T130I_6	HLA-A02:01	SLMDVIEEV	0.9992	0.8487	0.007	1.02	0.0016	25.49	1/982	1/7748
SNV	Breast	DHX15_P674L_3	HLA-B08:01	NLLRRSTDF	0.9286	0.7777	0.3465	192.71	0.2297	55.87	1/982	1/7748
SNV	Breast	DHX15_P674L_10	HLA-C07:01	SRIMDRFNLL	0.9998	0.7183	0.1515	285.15	0.1335	55.87	1/982	1/7748
SNV	Breast	DHX15_P674L_9	HLA-C03:03	RIMDRFNLL	0.9862	0.9916	0.5329	43.39	0.1908	55.87	1/982	1/7748
SNV	Breast	DIAPH1_P253L_7	HLA-A02:01	AMDPAVLNM	0.9851	0.787	0.5034	11.73	0.1714	70.71	1/982	1/7748
SNV	Breast	DIAPH1_P253L_9	HLA-C07:01	VRAMDPAVL	0.9862	0.7925	0.221	213.57	0.1183	70.71	1/982	1/7748
SNV	Breast	DIAPH1_P253L_8	HLA-C03:03	RAMDPAVL	0.9996	0.9935	0.8294	57.87	0.2172	70.71	1/982	1/7748
SNV	Breast	DIAPH1_P253L_7	HLA-C03:03	AMDPAVLNM	0.994	0.9933	0.2269	98.75	0.2732	70.71	1/982	1/7748
SNV	Breast	DIAPH1_P253L_8	HLA-C03:03	RAMDPAVLNM	0.9991	0.9934	0.1786	137.56	0.3101	70.71	1/982	1/7748
SNV	Breast	DIAPH1_S171F_1	HLA-A02:01	FLNNNPVSWV	0.9966	0.6005	0.3449	6.15	0.1193	70.71	1/982	1/7748
SNV	Breast	DISP1_L1027F_1	HLA-A02:01	FVLLGWELNV	0.9884	0.624	0.3974	292.48	0.5685	7.74	1/982	1/7748
SNV	Breast	DISP1_L1027F_7	HLA-C03:03	FVTVGSFVL	0.9912	0.9918	0.1786	44.37	0.1925	7.74	1/982	1/7748
SNV	Breast	DNAH5_D1694N_7	HLA-A02:01	LLPHLLNQL	0.9831	0.6416	0.2736	415.32	0.6345	2.29	1/982	1/7748
SNV	Breast	DNAJC13_A1201T_10	HLA-A02:01	FLGEFDTPETI	0.9982	0.8307	0.783	28.22	0.2466	19.26	1/982	1/7748
SNV	Breast	DNAJC13_G2093S_7	HLA-C03:03	ASLETISPL	0.9997	0.9948	0.0411	31.53	0.1688	19.26	1/982	1/7748
SNV	Breast	DNAJC1_P290L_3	HLA-C03:03	YTLLETTYI	0.9341	0.978	1.0226	415.15	0.4725	118.47	1/982	1/7748
SNV	Breast	DNASE2_G241S_3	HLA-C03:03	YSSWLAAAL	0.9996	0.9918	0.0031	22.42	0.1477	90.24	1/982	1/7748
SNV	Breast	DOPEY1_T2025I_1	HLA-B15:01	IANITPSVY	0.9986	0.8747	0.1944	11.47	0.105	4.81	1/982	1/7748
SNV	Breast	DPAGT1_L225F_9	HLA-C07:01	CRDDHVFSF	0.9954	0.5799	0.0096	54.82	0.0686	27.23	1/982	1/7748
SNV	Breast	DSEL_S342F_10	HLA-B15:01	FQRTVGIADF	0.9997	0.8721	0.348	84.68	0.2712	3.12	1/982	1/7748
SNV	Breast	DSTYK_E299K_1	HLA-C07:01	KRSPLYRQL	0.9988	0.705	0.0054	97.62	0.0861	10.26	1/982	1/7748
SNV	Breast	DTD1_D92G_8	HLA-B15:01	VLKGNKPGF	0.9809	0.7759	0.2672	199.15	0.3708	20.02	1/982	1/7748
SNV	Breast	DYNC1H1_R2643H_3	HLA-C07:01	YRHTPNGVV	0.9082	0.6249	0.1915	190.94	0.1141	100.79	1/982	1/7748
SNV	Breast	DYNC1H1_R2643H_3	HLA-C07:01	YRHTPNGVVL	0.9986	0.7516	0.1809	41.08	0.0584	100.79	1/982	1/7748
SNV	Breast	EDAR_S366F_9	HLA-B15:01	RMLSSTYNF	0.9843	0.8723	0.045	21.13	0.1452	1.62	1/982	1/7748
SNV	Breast	EHBP1_A22V_7	HLA-B15:01	SKFQFVVSY	0.7628	0.8848	0.3756	125.18	0.3102	12.82	1/982	1/7748
SNV	Breast	EIF3L_L168F_1	HLA-C03:03	FNADGPAPL	0.9987	0.9893	0.0964	175.48	0.3434	149.34	1/982	1/7748
SNV	Breast	EIF4E3_I84R_8	HLA-B15:01	YTVQTVQRF	0.9826	0.7071	0.42	26.32	0.1612	13.98	1/982	1/7748
SNV	Breast	EIF4E3_I84R_8	HLA-C03:03	YTVQTVQRF	0.9989	0.9233	0.422	448.07	0.4849	13.98	1/982	1/7748
SNV	Breast	ENTPD7_S541N_7	HLA-C07:01	VRQAHGNWF	0.954	0.6353	0.112	366.07	0.1527	24	1/982	1/7748
SNV	Breast	EP300_A450V_3	HLA-C03:03	QSVPNLSTV	0.9884	0.9853	0.1586	244.06	0.3886	44.06	1/982	1/7748
SNV	Breast	ERBB2_N427K_5	HLA-C03:03	SVFQKLQVI	0.9697	0.9716	0.3655	191.87	0.3556	87.4	1/982	1/7748
SNV	Breast	ERV3-1_C437Y_11	HLA-B15:01	RQLPAKWSGAY	0.9999	0.8797	0.1529	139.71	0.3245	20.93	1/982	1/7748
SNV	Breast	FAM35A_L243F_1	HLA-C03:03	FSIITSSQV	0.9876	0.9315	0.185	303.25	0.4217	30.23	1/982	1/7748
SNV	Breast	FAM45A_P119L_9	HLA-B08:01	RMYLKHGSL	0.9946	0.7271	0.0549	25.44	0.074	8.08	1/982	1/7748
SNV	Breast	FAM45A_P119L_2	HLA-B15:01	SLVKMMESY	0.9993	0.9124	0.139	9.99	0.0949	8.08	1/982	1/7748
SNV	Breast	FAT1_H3931Y_7	HLA-A02:01	LVLDQVYTA	0.9806	0.5038	0.1038	96.08	0.3864	22.98	1/982	1/7748
SNV	Breast	FAT4_S3670F_1	HLA-B15:01	FQPRSTDGTF	0.9989	0.7215	0.6381	126.19	0.3112	3	1/982	1/7748
SNV	Breast	FBXO33_V306M_2	HLA-B08:01	FMNLHSLAL	0.9879	0.8756	0.0014	129.53	0.1939	12.83	1/982	1/7748
SNV	Breast	FBXO33_V306M_2	HLA-C03:03	FMNLHSLAL	0.9969	0.9928	0.099	36.62	0.1784	12.83	1/982	1/7748
SNV	Breast	FCHO1_E771K_8	HLA-B15:01	TLTQVSVKY	0.9924	0.809	0.3115	30.16	0.171	1.61	1/982	1/7748
SNV	Breast	FCHO1_E771K_6	HLA-B15:01	TQVSVKYGY	0.9984	0.7886	0.1336	8.37	0.0811	1.61	1/982	1/7748
SNV	Breast	FKBP4_R189H_9	HLA-B15:01	KLFDQRELHF	0.9999	0.9437	0.2855	52.79	0.2237	243.99	1/982	1/7748
SNV	Breast	FLNB_T1019I_8	HLA-B15:01	GLYAVDVIY	0.9959	0.7295	0.2634	18.53	0.1355	146.97	1/982	1/7748
SNV	Breast	FLRT3_S141F_8	HLA-A02:01	HLDDNSVFA	0.9816	0.707	0.5443	18.88	0.2125	2.56	1/982	1/7748
SNV	Breast	FLRT3_S141F_8	HLA-A02:01	HLDDNSVFAV	0.9984	0.71	0.3414	4.34	0.0933	2.56	1/982	1/7748
SNV	Breast	FNTB_L192F_10	HLA-B15:01	SLKQPDGSFF	0.9998	0.9537	0.251	40.12	0.1952	13.68	1/982	1/7748
SNV	Breast	FPGS_C510Y_9	HLA-B15:01	LAPHPPHTY	0.9922	0.9178	0.2045	262.54	0.4089	63.31	1/982	1/7748
SNV	Breast	FPGS_C510Y_10	HLA-B15:01	LLAPHPPHTY	1	0.8783	0.1541	5.57	0.0553	63.31	1/982	1/7748
SNV	Breast	FPGS_C510Y_3	HLA-B15:01	HTYSASSLVF	0.9994	0.8074	0.42	327.87	0.4467	63.31	1/982	1/7748
SNV	Breast	FRAS1_P1544L_3	HLA-C03:03	RPLPAAPHL	0.9172	0.9928	1.5139	391.5	0.463	1.19	1/982	1/7748
SNV	Breast	FREM2_A421V_3	HLA-B15:01	GAVSDPFAF	0.9232	0.8488	0.505	495.87	0.5186	1.32	1/982	1/7748
SNV	Breast	FREM2_A421V_2	HLA-C03:03	AVSDPFAFM	0.9932	0.9771	0.0964	186.23	0.3516	1.32	1/982	1/7748
SNV	Breast	FZD2_V290M_4	HLA-C03:03	YTMMSVAYI	0.8566	0.9812	0.8225	182.15	0.3485	11.73	1/982	1/7748
SNV	Breast	G3BP1_P464L_9	HLA-B08:01	FGVGRGLAL	0.9955	0.8017	0.0367	68.74	0.1408	53.23	1/982	1/7748
SNV	Breast	G3BP1_P464L_9	HLA-C03:03	FGVGRGLAL	0.9996	0.9872	0.0778	3.02	0.0317	53.23	1/982	1/7748
SNV	Breast	GATA3_H281R_8	HLA-C07:01	WRRDGTGRY	0.7893	0.5059	0.378	376.42	0.1547	515.57	1/982	1/7748
SNV	Breast	GATA3_H281R_7	HLA-C07:01	RRDGTGRYL	0.9544	0.5794	0.0876	45.92	0.0623	515.57	1/982	1/7748
SNV	Breast	GCNT2_K156R_6	HLA-A02:01	FLASKRESV	0.9861	0.7119	0.1204	6.13	0.119	6.59	1/982	1/7748
SNV	Breast	GCNT2_K156R_6	HLA-B08:01	FLASKRESV	0.9978	0.7367	0.036	54.4	0.1228	6.59	1/982	1/7748
SNV	Breast	GCNT2_K156R_4	HLA-B15:01	ASKRESVVY	0.9995	0.9001	0.4	20.13	0.1416	6.59	1/982	1/7748
SNV	Breast	GEM_A125T_7	HLA-C03:03	MVDGESTTI	0.9929	0.9846	0.215	59.36	0.2198	36.26	1/982	1/7748
SNV	Breast	GLTSCR1L_T767I_6	HLA-B08:01	QLLKRIQAM	0.9981	0.7987	0.0032	3	0.0094	17.82	1/982	1/7748
SNV	Breast	GLTSCR1L_T767I_1	HLA-B15:01	IQAMLNKY	0.9994	0.6624	0.5867	258.66	0.4064	17.82	1/982	1/7748
SNV	Breast	GLTSCR1L_T767I_2	HLA-B15:01	RIQAMLNKY	0.9986	0.7541	0.1735	34.52	0.182	17.82	1/982	1/7748
SNV	Breast	GPBAR1_V188M_9	HLA-C03:03	AAAFLSVRM	0.9991	0.9928	0.6035	134.99	0.3075	1.1	1/982	1/7748
SNV	Breast	GPBAR1_V188M_8	HLA-C03:03	AAFLSVRML	0.9982	0.9916	0.2318	51.81	0.2055	1.1	1/982	1/7748
SNV	Breast	GPBAR1_V188M_1	HLA-C03:03	MLATAHRQL	0.9731	0.9895	0.9471	404.6	0.4684	1.1	1/982	1/7748
SNV	Breast	GPC4_S355Y_1	HLA-A02:01	YISESAFSA	0.9905	0.5866	0.0876	76.3	0.3567	65.87	1/982	1/7748
SNV	Breast	GPC4_S355Y_3	HLA-C07:01	SRYISESAF	0.9967	0.762	0.0191	64.66	0.0733	65.87	1/982	1/7748
SNV	Breast	GRID1_D662N_3	HLA-B15:01	RMNNPIRTF	0.9989	0.9845	0.0584	1.45	0.0058	3.31	1/982	1/7748
SNV	Breast	GRID1_D662N_4	HLA-C07:01	SRMNNPIRTF	0.9997	0.829	0.0592	55.63	0.0691	3.31	1/982	1/7748
SNV	Breast	GRID1_D662N_3	HLA-C03:03	RMNNPIRTF	0.6862	0.9957	1.6404	341.92	0.4411	3.31	1/982	1/7748
SNV	Breast	GSDMC_S48L_2	HLA-A02:01	SLFWEQSDYV	0.9948	0.8059	0.1492	8.34	0.1439	2.12	1/982	1/7748
SNV	Breast	GSDMC_S48L_2	HLA-B15:01	SLFWEQSDY	0.9947	0.9658	0.2825	186.82	0.3624	2.12	1/982	1/7748
SNV	Breast	GSTO1_A214V_10	HLA-A02:01	AMKEDPTVSV	0.9482	0.5484	0.8283	223.53	0.5249	223.85	1/982	1/7748
SNV	Breast	HAUS2_T180I_9	HLA-A02:01	KMDILVTEI	0.9914	0.5397	0.347	33.33	0.2623	14.35	1/982	1/7748
SNV	Breast	HAUS2_T180I_6	HLA-A02:01	ILVTEIEEL	0.988	0.6755	0.4765	3.4	0.0733	14.35	1/982	1/7748
SNV	Breast	HEATR6_S805N_7	HLA-A02:01	ILPEAFNNL	0.9906	0.5341	0.534	6.23	0.1202	15.22	1/982	1/7748
SNV	Breast	HEG1_A366T_2	HLA-C03:03	ITTTSSSVL	0.9969	0.9818	0.2868	444.91	0.4837	45.43	1/982	1/7748
SNV	Breast	HIVEP1_V2510I_2	HLA-C03:03	QIHPPGLAL	0.9989	0.9942	0.031	5.3	0.0521	9.07	1/982	1/7748
SNV	Breast	HJURP_A358T_5	HLA-A02:01	KLEKTFLEV	0.9973	0.8697	0.3574	121.33	0.4218	7.42	1/982	1/7748
SNV	Breast	HM13_G270R_9	HLA-A02:01	GLGDVVIPRI	0.9864	0.6096	0.6755	60.39	0.3267	61.46	1/982	1/7748
SNV	Breast	HNMT_A166V_7	HLA-A02:01	SLLGTNVKM	0.9591	0.7886	0.5089	22.65	0.2279	58.52	1/982	1/7748
SNV	Breast	HNMT_A166V_7	HLA-A02:01	SLLGTNVKML	0.9444	0.7117	1.0719	217.5	0.5205	58.52	1/982	1/7748
SNV	Breast	HRASLS5_P128L_2	HLA-B08:01	KLRPRPGDL	0.918	0.5114	0.1233	241.32	0.2492	6.38	1/982	1/7748
SNV	Breast	HTRA1_R269H_5	HLA-A02:01	LLLGHSSEL	0.9871	0.6513	0.1825	18.77	0.212	760.95	1/982	1/7748
SNV	Breast	HTRA1_R269H_5	HLA-C03:03	LLLGHSSEL	0.9794	0.9919	0.4154	333.8	0.4372	760.95	1/982	1/7748
SNV	Breast	IGF1R_S1313F_6	HLA-C03:03	SASSSFLPL	0.9995	0.9935	0.0031	18.63	0.1323	52.25	1/982	1/7748
SNV	Breast	IKZF1_A314T_2	HLA-B15:01	QTINNAINY	0.9911	0.9656	0.7468	149.07	0.333	4.62	1/982	1/7748
SNV	Breast	IKZF1_A314T_1	HLA-C03:03	TINNAINYL	0.9893	0.977	0.5754	362.03	0.4504	4.62	1/982	1/7748
SNV	Breast	IL4R_P754S_4	HLA-C03:03	RSSSPTTPL	0.9883	0.9874	0.0717	72.37	0.2408	22.21	1/982	1/7748
SNV	Breast	IPO4_R899G_4	HLA-A02:01	FVSGLLPVL	0.9933	0.7673	0.1204	87.43	0.3742	4.65	1/982	1/7748
SNV	Breast	IPO4_R899G_1	HLA-A02:01	GLLPVLLST	0.9798	0.7497	0.3398	18.26	0.2097	4.65	1/982	1/7748
SNV	Breast	IPO4_R899G_1	HLA-A02:01	GLLPVLLSTA	0.99	0.6817	0.4173	247.48	0.5414	4.65	1/982	1/7748
SNV	Breast	IPO4_R899G_4	HLA-C03:03	FVSGLLPVL	0.9995	0.9983	0.024	16.57	0.122	4.65	1/982	1/7748
SNV	Breast	IRAK2_E384K_4	HLA-A02:01	YLPKDFIRV	0.9948	0.6232	0.0464	1.37	0.016	4.71	1/982	1/7748
SNV	Breast	ISM1_E376K_5	HLA-B08:01	MLSLKSTTL	0.998	0.929	0.0024	4.88	0.0201	11.64	1/982	1/7748
SNV	Breast	ISM1_E376K_5	HLA-C03:03	MLSLKSTTL	0.9621	0.9933	0.797	385.68	0.4606	11.64	1/982	1/7748
SNV	Breast	ITGA8_M317I_6	HLA-B15:01	FTGEQIASY	0.9834	0.9394	0.1735	23.85	0.154	3.16	1/982	1/7748
SNV	Breast	ITGA8_M317I_3	HLA-B15:01	EQIASYFGY	0.9937	0.7218	0.3175	183.33	0.36	3.16	1/982	1/7748
SNV	Breast	ITGA8_M317I_1	HLA-C03:03	IASYFGYTV	0.9873	0.9877	0.6092	113.64	0.2878	3.16	1/982	1/7748
SNV	Breast	ITGB4_T383I_3	HLA-C07:01	LRIEVTSKM	0.9982	0.7407	0.0211	13	0.0264	114.81	1/982	1/7748
SNV	Breast	ITPKB_V501M_2	HLA-A02:01	GMQPGNSRV	0.843	0.6249	0.5616	318.19	0.5822	20.19	1/982	1/7748
SNV	Breast	KAT6A_R329W_7	HLA-B15:01	KAAQIKWRY	0.9834	0.8727	1.0606	235.36	0.3926	21.57	1/982	1/7748
SNV	Breast	KATNAL2_S366F_9	HLA-B15:01	VMSQRGTAF	0.9968	0.5875	0.0015	2.14	0.015	2.13	1/982	1/7748
SNV	Breast	KATNAL2_S366F_10	HLA-B15:01	SVMSQRGTAF	0.9995	0.6023	0.1821	30.65	0.1722	2.13	1/982	1/7748
SNV	Breast	KCND1_D377N_3	HLA-C03:03	YGNMVPSTI	0.9963	0.9872	0.9225	49.32	0.2003	2.41	1/982	1/7748
SNV	Breast	KIAA0196_A46T_6	HLA-B15:01	RLKDRTDQQKY	1	0.8045	0.495	394.4	0.4781	53.21	1/982	1/7748
SNV	Breast	KIAA0196_G617E_6	HLA-B15:01	SQYYSEELVSY	1	0.8143	0.2193	34.83	0.1829	53.21	1/982	1/7748
SNV	Breast	KIAA1217_A407V_1	HLA-C03:03	VSSHGGHPL	0.9972	0.9782	0.0153	159.87	0.3306	57.26	1/982	1/7748
SNV	Breast	KIF1B_G891R_4	HLA-B15:01	KLVRSSPIF	0.9897	0.9209	0.2421	45.19	0.207	10.49	1/982	1/7748
SNV	Breast	KIF21A_T394I_7	HLA-A02:01	ALRSEIIRL	0.9179	0.5797	0.7911	119.91	0.4198	5.27	1/982	1/7748
SNV	Breast	KIFC1_R356W_5	HLA-C03:03	RSDEWRGTL	0.9811	0.9938	0.2369	489.86	0.4993	18.71	1/982	1/7748
SNV	Breast	KLF5_P271L_2	HLA-B15:01	VLQTAVKQF	0.9936	0.6066	0.2215	63.65	0.244	48.29	1/982	1/7748
SNV	Breast	LANCL2_C350Y_8	HLA-B15:01	YLKEAMEY	0.9999	0.9702	0.8555	74.75	0.2597	22.46	1/982	1/7748
SNV	Breast	LPCAT2_V172I_3	HLA-B15:01	AQIPLIGRL	0.9971	0.8444	0.6381	102.2	0.2885	15.12	1/982	1/7748
SNV	Breast	LPGAT1_D298N_3	HLA-A01:01	TDNLTTWLY	0.9816	0.5008	0.193	49.9	0.3265	22.17	1/982	1/7748
SNV	Breast	LPGAT1_D298N_4	HLA-A01:01	ETDNLTTWLYQ	0.9922	0.5111	1.7328	8.51	0.1744	22.17	1/982	1/7748
SNV	Breast	LRCH1_A488T_8	HLA-C03:03	YPMGSAETL	0.9987	0.9842	0.3655	20.25	0.1392	11.3	1/982	1/7748
SNV	Breast	LRRC41_A382V_3	HLA-C03:03	SSVPQPKPL	0.9997	0.9647	0.0319	71.63	0.2397	38.71	1/982	1/7748
SNV	Breast	MAGED1_G590R_7	HLA-B08:01	EALRKMRL	0.9989	0.6747	0.3675	53.55	0.1217	161.28	1/982	1/7748
SNV	Breast	MAN1A1_A523T_8	HLA-B15:01	FMKLGPETF	0.9991	0.9469	0.0037	3.29	0.0315	102.24	1/982	1/7748
SNV	Breast	MAN1A1_A523T_6	HLA-B15:01	KLGPETFRF	0.9841	0.9302	0.5637	119.84	0.3045	102.24	1/982	1/7748
SNV	Breast	MAN1B1_A126T_7	HLA-A02:01	KMRPEITGL	0.9253	0.6018	0.4853	261.69	0.5505	48.32	1/982	1/7748
SNV	Breast	MAN1B1_A126T_7	HLA-B15:01	KMRPEITGL	0.9947	0.8852	0.3141	114.73	0.2991	48.32	1/982	1/7748
SNV	Breast	MAP3K3_A148V_2	HLA-B15:01	SVGDINTIY	0.9598	0.7108	0.2303	9.84	0.0935	20.56	1/982	1/7748
SNV	Breast	MAP3K3_A148V_4	HLA-B15:01	SQSVGDINTIY	0.9999	0.7416	0.3141	85.8	0.2724	20.56	1/982	1/7748
SNV	Breast	MAP3K3_A148V_9	HLA-C07:01	VRIKASQSV	0.9632	0.644	0.1515	258.16	0.1258	20.56	1/982	1/7748
SNV	Breast	MAPK1IP1L_P173S_9	HLA-B15:01	NMPYPSPGSY	0.9981	0.9434	0.5559	44	0.2041	37.22	1/982	1/7748
SNV	Breast	MAPKBP1_R318Q_7	HLA-A02:01	FLSTLPQPHAL	0.9933	0.8173	1.1118	28.56	0.2476	7.58	1/982	2/7748
SNV	Breast	MAPKBP1_R318Q_5	HLA-C03:03	STLPQPHAL	0.9997	0.9963	0.011	3.3	0.0342	7.58	1/982	1/7748
SNV	Breast	MBD5_S920N_3	HLA-A02:01	LLNSLPISL	0.9933	0.506	0.3119	3.16	0.0696	3.54	1/982	1/7748
SNV	Breast	MBD5_S920N_4	HLA-A02:01	SLLNSLPISL	0.9917	0.6417	0.3185	22.07	0.2257	3.54	1/982	1/7748
SNV	Breast	MBD5_S920N_3	HLA-C03:03	LLNSLPISL	0.9885	0.9876	0.6309	107.98	0.2825	3.54	1/982	1/7748
SNV	Breast	MBNL3_A244V_4	HLA-B08:01	RLKVAHHQM	0.9446	0.544	0.1755	239.9	0.2487	2.94	1/982	1/7748
SNV	Breast	MBNL3_A244V_4	HLA-B15:01	RLKVAHHQM	0.983	0.6937	0.3381	107.28	0.293	2.94	1/982	1/7748
SNV	Breast	MDH1B_V456I_7	HLA-B08:01	LIQEKLIAL	0.9955	0.7474	0.0109	10.86	0.0416	2.17	1/982	1/7748
SNV	Breast	MDH1B_V456I_7	HLA-C03:03	LIQEKLIAL	0.9996	0.9869	0.2706	307.13	0.4237	2.17	1/982	1/7748
SNV	Breast	MDH1B_V456I_1	HLA-C03:03	IALGDKIHF	0.996	0.9682	0.3655	280.42	0.409	2.17	1/982	1/7748
SNV	Breast	MED21_R110Q_4	HLA-C03:03	VVYQGDMLL	0.996	0.9763	0.245	4.92	0.0491	35.06	1/982	1/7748
SNV	Breast	MED4_T178I_6	HLA-C07:01	RRPYPIDLEM	0.9985	0.7796	0.2061	246.08	0.1236	48.39	1/982	1/7748
SNV	Breast	MED4_T178I_5	HLA-C03:03	RPYPIDLEM	0.9167	0.9874	0.9391	13.13	0.0993	48.39	1/982	1/7748
SNV	Breast	MKI67_E217K_5	HLA-C07:01	SRYGKLKSV	0.9309	0.7087	0.0498	19.18	0.0368	14.15	1/982	1/7748
SNV	Breast	MST1R_R1248L_2	HLA-A02:01	ALLPVKWMA	0.9832	0.6078	0.324	15.58	0.1961	12.33	1/982	1/7748
SNV	Breast	MST1R_R1248L_2	HLA-A02:01	ALLPVKWMAL	0.9754	0.6452	0.8694	354.59	0.5997	12.33	1/982	1/7748
SNV	Breast	MST1R_R1248L_1	HLA-B08:01	LLPVKWMAL	0.9883	0.874	0.0465	274.97	0.2629	12.33	1/982	1/7748
SNV	Breast	MST1R_R1248L_9	HLA-C03:03	SVQQHRHAL	0.9973	0.9599	0.1623	311.91	0.4262	12.33	1/982	1/7748
SNV	Breast	MST1R_V207M_9	HLA-C03:03	VASSLDAAM	0.9934	0.9706	0.0559	25.26	0.1555	12.33	1/982	1/7748
SNV	Breast	MTBP_V494I_9	HLA-A02:01	KLAKQPETI	0.9807	0.7898	0.5524	55.49	0.3158	1.32	1/982	1/7748
SNV	Breast	MTBP_V494I_9	HLA-A02:01	KLAKQPETISV	0.9909	0.7779	1.0905	26.07	0.2398	1.32	1/982	1/7748
SNV	Breast	MTO1_P258L_9	HLA-C03:03	FSILNKHIL	0.9995	0.9814	0.0804	18.91	0.1335	4.98	1/982	1/7748
SNV	Breast	NAA10_S74L_8	HLA-B08:01	VPHGHITL	0.9901	0.8206	0.4241	37.46	0.0969	21.1	1/982	1/7748
SNV	Breast	NAA10_S74L_8	HLA-B08:01	VPHGHITLL	0.7509	0.8251	0.0686	52.49	0.1204	21.1	1/982	1/7748
SNV	Breast	NAA10_S74L_8	HLA-C03:03	VPHGHITLL	0.9604	0.9782	0.2525	121.11	0.2944	21.1	1/982	1/7748
SNV	Breast	NEDD1_G364E_5	HLA-A02:01	AMGKETVAV	0.9882	0.659	0.212	12.16	0.1743	20.08	1/982	1/7748
SNV	Breast	NEK10_T739I_4	HLA-A02:01	SLAIKIVEA	0.9951	0.734	0.5258	12.74	0.1783	10.85	1/982	1/7748
SNV	Breast	NEK10_T739I_4	HLA-A02:01	SLAIKIVEAV	0.9911	0.7671	0.5286	195.6	0.5033	10.85	1/982	1/7748
SNV	Breast	NEK10_T739I_2	HLA-B15:01	AIKIVEAVY	0.9997	0.9082	0.1821	10.88	0.1019	10.85	1/982	1/7748
SNV	Breast	NEK10_T739I_3	HLA-C03:03	LAIKIVEAV	0.9973	0.9942	0.0929	83.19	0.2554	10.85	1/982	1/7748
SNV	Breast	NEK2_V155I_4	HLA-B15:01	KQNIKLGDF	0.9924	0.6893	0.2913	409.34	0.4844	11.34	1/982	1/7748
SNV	Breast	NEK8_P665L_7	HLA-A02:01	QLDETHLYTV	0.9981	0.6138	0.5579	26.55	0.2414	6.72	1/982	1/7748
SNV	Breast	NEK8_P665L_8	HLA-B15:01	VQLDETHLY	0.9994	0.8423	0.0537	3.27	0.0311	6.72	1/982	1/7748
SNV	Breast	NFAT5_S1414L_2	HLA-C03:03	SLPQPQATL	0.9569	0.9947	0.3538	381.25	0.4587	6.38	1/982	1/7748
SNV	Breast	NKIRAS2_S14F_9	HLA-B15:01	KVVVCGQAF	0.9926	0.699	0.0428	490.02	0.5164	22.88	1/982	1/7748
SNV	Breast	NKIRAS2_S14F_3	HLA-C03:03	QAFVGKTSI	0.9906	0.9874	0.1586	41.31	0.1873	22.88	1/982	1/7748
SNV	Breast	NKRF_S192F_9	HLA-B15:01	NLSNPEMTF	0.9758	0.903	0.2215	264.17	0.41	13.19	1/982	1/7748
SNV	Breast	NLRC5_P1696S_8	HLA-B15:01	HLRVLHLSF	0.9983	0.9408	0.1375	242.88	0.3967	6.8	1/982	1/7748
SNV	Breast	NTM_G19E_8	HLA-C03:03	ISWAIFTEL	0.9993	0.9862	0.084	95.35	0.2695	8.77	1/982	1/7748
SNV	Breast	NTM_G19E_5	HLA-C03:03	AIFTELAAL	0.9943	0.9911	0.3473	174.05	0.3423	8.77	1/982	1/7748
SNV	Breast	NUP160_S260N_3	HLA-B15:01	KQNSVMQRL	0.9978	0.8962	0.7412	122.47	0.3073	20.9	1/982	1/7748
SNV	Breast	NUP205_A365V_3	HLA-B15:01	AIVDNVFLF	0.9905	0.8966	0.2065	77.24	0.2627	26.64	1/982	1/7748
SNV	Breast	NUP205_A365V_4	HLA-C03:03	LAIVDNVFL	0.9983	0.9872	0.2269	91.4	0.2651	26.64	1/982	1/7748
SNV	Breast	NUP85_S75F_9	HLA-B15:01	ILRKLFNEF	0.9984	0.8565	0.0595	24.61	0.1563	24.16	1/982	1/7748
SNV	Breast	NUP85_T276I_9	HLA-A02:01	YLQDSTFAI	0.9983	0.5234	0.0029	1.15	0.0104	24.16	1/982	1/7748
SNV	Breast	NUP85_T276I_2	HLA-A02:01	AISPHLESL	0.9784	0.6645	0.3811	387.71	0.6193	24.16	1/982	1/7748
SNV	Breast	NUP85_T276I_9	HLA-C03:03	YLQDSTFAI	0.8717	0.9842	0.6092	88.93	0.2623	24.16	1/982	1/7748
SNV	Breast	NUP85_T276I_5	HLA-C03:03	STFAISPHL	0.9989	0.9926	0.083	18.68	0.1325	24.16	1/982	1/7748
SNV	Breast	NUP85_T276I_2	HLA-C03:03	AISPHLESL	0.9997	0.9835	0.0597	122.71	0.2958	24.16	1/982	1/7748
SNV	Breast	NUP85_T276I_3	HLA-C03:03	FAISPHLESL	0.9999	0.9904	0.0271	33.5	0.1725	24.16	1/982	1/7748
SNV	Breast	OVGP1_G330S_2	HLA-B15:01	VSYDNAISF	0.9982	0.9232	0.0549	7.22	0.0684	1.13	1/982	1/7748
SNV	Breast	OVGP1_G330S_2	HLA-C03:03	VSYDNAISF	0.9982	0.9884	0.0425	2.13	0.0191	1.13	1/982	1/7748
SNV	Breast	PARP1_P369L_9	HLA-C03:03	TSASVAATL	0.9995	0.9849	0.0395	15.96	0.1182	93.52	1/982	1/7748
SNV	Breast	PCDHA11_P153S_8	HLA-B15:01	KQSDSRFSL	0.9953	0.8276	0.3661	285.7	0.4233	1.13	1/982	1/7748
SNV	Breast	PDP1_G281S_6	HLA-C03:03	VAHVDSVDL	0.9975	0.9728	0.1623	288.84	0.4138	29.54	1/982	1/7748
SNV	Breast	PER2_P233S_4	HLA-A02:01	FLASHDVGV	0.9989	0.576	0.0169	1.2	0.0115	28.9	1/982	1/7748
SNV	Breast	PGS1_V99M_2	HLA-B15:01	RMLSSPAEF	0.9969	0.9379	0.0071	3.76	0.0373	15.26	1/982	1/7748
SNV	Breast	PGS1_V99M_1	HLA-B15:01	MLSSPAEFF	0.9939	0.9152	0.0506	241.46	0.3959	15.26	1/982	1/7748
SNV	Breast	PHLDB1_T435I_7	HLA-A01:01	FSDGLAIRT	0.7735	0.6205	0.4023	352.38	0.5705	12.69	1/982	1/7748
SNV	Breast	PHLDB1_T435I_9	HLA-C03:03	RTFSDGLAI	0.963	0.9945	0.2194	15.83	0.1174	12.69	1/982	1/7748
SNV	Breast	PHLPP2_V65I_8	HLA-C03:03	SSSDLHLIL	0.9995	0.9761	0.1442	51.32	0.2045	5.8	1/982	1/7748
SNV	Breast	PKP2_R158K_1	HLA-B15:01	KAHYTHSDY	0.9965	0.8427	0.3211	225.01	0.3867	11.68	1/982	1/7748
SNV	Breast	PNPT1_A79T_7	HLA-B15:01	VQSGDTTVM	0.9965	0.7873	0.1565	15.85	0.1242	21.12	1/982	1/7748
SNV	Breast	POLA2_D358N_4	HLA-C03:03	ITYNPLLDL	0.9978	0.9879	0.4392	132.33	0.3047	16.46	1/982	1/7748
SNV	Breast	PPP2R5A_L234F_8	HLA-B15:01	KQINNIFFRF	0.9996	0.8666	0.495	492.61	0.5173	93.05	1/982	1/7748
SNV	Breast	PPP2R5D_A591T_6	HLA-B08:01	EAHKRTEEF	0.9847	0.5827	0.27	137.61	0.2005	54.77	1/982	1/7748
SNV	Breast	PRDM10_P465S_2	HLA-C03:03	LSQETQSSL	0.9997	0.9882	0.1085	109.59	0.284	5.08	1/982	1/7748
SNV	Breast	PRDM2_G767R_8	HLA-C03:03	KAAWTDARL	0.9819	0.9902	0.5966	228.15	0.3794	21.23	1/982	1/7748
SNV	Breast	PRKACA_A219V_9	HLA-A02:01	ILSKGYNKV	0.9519	0.5958	0.2023	36.55	0.2712	43.81	1/982	1/7748
SNV	Breast	PRKCD_F166L_4	HLA-B15:01	ATFLGQPTF	0.9645	0.986	0.1845	20.99	0.1447	86.67	1/982	1/7748
SNV	Breast	PRKCD_F166L_4	HLA-C03:03	ATFLGQPTF	0.9769	0.9944	0.5966	35.64	0.1765	86.67	1/982	1/7748
SNV	Breast	PRKD1_A481V_9	HLA-A02:01	SLEPVKTSV	0.9421	0.8179	0.6314	78.29	0.36	3.23	1/982	1/7748
SNV	Breast	PRKD1_A481V_7	HLA-B08:01	EPVKTSVL	0.9961	0.609	1.2913	378.89	0.2972	3.23	1/982	1/7748
SNV	Breast	PRKD3_V762M_7	HLA-A02:01	SLDMWSMGV	0.9873	0.8262	0.1395	11.47	0.1696	12.4	1/982	1/7748
SNV	Breast	PRKG1_P274L_2	HLA-A02:01	SLSEDPVFL	0.9915	0.8216	0.1243	1.42	0.0179	6.79	1/982	1/7748
SNV	Breast	PRUNE2_A2175V_9	HLA-A02:01	VLPPIGYQV	0.9955	0.794	0.1084	2.1	0.0477	1.72	1/982	1/7748
SNV	Breast	PSMC5_P133S_7	HLA-B08:01	LPNKVDSL	0.9923	0.5421	1.8589	322.64	0.28	111.28	1/982	1/7748
SNV	Breast	PUS10_R293K_5	HLA-B15:01	FVAGKYNKY	0.9812	0.8959	0.1353	13.34	0.114	4.78	1/982	1/7748
SNV	Breast	PYROXD2_P428S_1	HLA-C03:03	SSHRPVIEL	0.9995	0.9891	0.0452	69.1	0.2359	9.38	1/982	1/7748
SNV	Breast	RABEP2_A88V_1	HLA-B15:01	VILKDSISSY	0.9997	0.8062	0.404	5.34	0.0538	20.51	1/982	1/7748
SNV	Breast	RBM48_K318E_8	HLA-A02:01	PLLPDISEV	0.9177	0.6787	0.8325	37.99	0.275	7.82	1/982	1/7748
SNV	Breast	RELA_A192D_7	HLA-C07:01	NRAPNTDEL	0.9871	0.5194	0.1643	196.74	0.1153	72.09	1/982	1/7748
SNV	Breast	REPS2_P297L_6	HLA-B15:01	SLQPDLSSF	0.999	0.9139	0.0584	4.53	0.0467	13.31	1/982	1/7748
SNV	Breast	REPS2_P297L_7	HLA-B15:01	RSLQPDLSSF	0.9987	0.9521	0.4168	56.53	0.2312	13.31	1/982	1/7748
SNV	Breast	RPGRIP1L_L247F_9	HLA-B15:01	KENEIELSF	0.8643	0.9579	0.4444	155.1	0.3381	3.25	1/982	1/7748
SNV	Breast	S100A2_T14I_7	HLA-B15:01	ALAVLVITF	0.9858	0.9147	0.0695	331.98	0.4488	359.02	1/982	1/7748
SNV	Breast	S100A2_T14I_4	HLA-B15:01	VLVITFHKY	0.9259	0.7978	0.2303	276.65	0.4178	359.02	1/982	1/7748
SNV	Breast	SAA2-SAA4_R156H_5	HLA-B15:01	KLISHSRVY	0.9995	0.7772	0.0781	1.72	0.0086	9.49	1/982	1/7748
SNV	Breast	SAMD9_V1070L_1	HLA-B15:01	LLLESIHRF	0.9842	0.7348	0.2233	29.48	0.1694	12.72	1/982	1/7748
SNV	Breast	SARNP_E7K_7	HLA-B08:01	TVKLHKLKL	0.9853	0.5265	0.04	12.53	0.0476	2.35	1/982	1/7748
SNV	Breast	SCAI_V111I_8	HLA-B08:01	FQQQHRQIL	0.9902	0.5428	0.048	272.19	0.2618	2.26	1/982	1/7748
SNV	Breast	SCAI_V111I_3	HLA-B15:01	RQILDNRY	0.9995	0.9154	1.0029	58.24	0.2344	2.26	1/982	1/7748
SNV	Breast	SDR42E1_S359F_9	HLA-B15:01	KAHGHGRSF	0.9922	0.9498	0.1781	22.14	0.1486	1.84	1/982	1/7748
SNV	Breast	SDR42E1_S359F_9	HLA-C03:03	KAHGHGRSF	0.8221	0.9923	0.1366	70.79	0.2384	1.84	1/982	1/7748
SNV	Breast	SEMA7A_S576L_2	HLA-A02:01	YLWRHKENV	0.9806	0.8198	0.1465	2.95	0.0644	8.95	1/982	1/7748
SNV	Breast	SERINC3_A204T_7	HLA-B08:01	NPRLWYTAL	0.9728	0.6344	0.026	23.11	0.0695	130.75	1/982	1/7748
SNV	Breast	SERPINE1_A262V_3	HLA-C03:03	IAVPYEKEV	0.9915	0.9825	0.1417	391.47	0.463	108.29	1/982	1/7748
SNV	Breast	SERPINE1_A262V_1	HLA-C03:03	VPYEKEVPL	0.9934	0.9908	0.8805	159.99	0.3307	108.29	1/982	1/7748
SNV	Breast	SETX_S1545N_3	HLA-B15:01	SLNGTKCKY	0.9873	0.7714	0.2215	90.5	0.2773	24	1/982	1/7748
SNV	Breast	SKIV2L_N753Y_1	HLA-A02:01	YLLRVDALRV	0.9933	0.763	0.5258	147.25	0.4549	24.5	1/982	1/7748
SNV	Breast	SKIV2L_P66L_2	HLA-A02:01	SLAWLPLHGV	0.9895	0.872	0.097	185.89	0.4948	24.5	1/982	1/7748
SNV	Breast	SLAMF7_V37M_7	HLA-B15:01	GSVGGAMTF	0.99	0.807	0.1883	21.12	0.1451	8.86	1/982	1/7748
SNV	Breast	SLAMF7_V37M_7	HLA-C03:03	GSVGGAMTF	0.9939	0.9579	0.384	224.15	0.3769	8.86	1/982	1/7748
SNV	Breast	SLC11A1_A317S_7	HLA-B15:01	YQKTNQSAF	0.9998	0.8766	0.0071	1.72	0.0085	5.32	1/982	1/7748
SNV	Breast	SLC15A2_E674K_5	HLA-B15:01	VQWAKFILF	0.9958	0.916	0.0801	280.38	0.4201	2.92	1/982	1/7748
SNV	Breast	SLC35C1_C239Y_9	HLA-B15:01	TFYNNVNAY	0.9752	0.9109	0.6244	260.62	0.4077	19.02	1/982	1/7748
SNV	Breast	SLC35C1_C239Y_11	HLA-B15:01	RLTFYNNVNAY	0.9986	0.9413	1.6074	341.36	0.4535	19.02	1/982	1/7748
SNV	Breast	SLC38A3_G478D_5	HLA-C03:03	FAMLDFLLM	0.9977	0.9867	0.0616	13.29	0.1	1.5	1/982	1/7748
SNV	Breast	SLC39A3_L46F_9	HLA-C07:01	HRSKKILSF	0.999	0.6106	0.0077	5.35	0.0099	10.38	1/982	1/7748
SNV	Breast	SMG8_S513L_3	HLA-B15:01	YQLNLPHNY	0.9994	0.5866	0.0381	3.03	0.0277	17.55	1/982	1/7748
SNV	Breast	SOX5_H63Y_9	HLA-B15:01	HVSFPNKPY	0.978	0.8266	0.2485	103.31	0.2895	1.16	1/982	1/7748
SNV	Breast	SP1_S421L_7	HLA-B15:01	LQAAPLLGQTF	1	0.8295	0.423	117.78	0.3022	64.6	1/982	1/7748
SNV	Breast	SP1_S421L_9	HLA-C03:03	QALQAAPLL	0.9994	0.9953	0.2056	118.6	0.2922	64.6	1/982	1/7748
SNV	Breast	SP2_P417S_8	HLA-B08:01	RPLPKIASA	0.9943	0.7426	0.1881	138.76	0.2013	37.39	1/982	1/7748
SNV	Breast	SP2_P417S_2	HLA-C03:03	ASAGSIISL	0.9997	0.9899	0.0284	7.5	0.0661	37.39	1/982	1/7748
SNV	Breast	SPEN_S1222F_1	HLA-B08:01	FPPSKKKRM	0.8889	0.5568	0.2367	213.14	0.2384	24.8	1/982	1/7748
SNV	Breast	SPEN_S2187F_8	HLA-A02:01	KLAEASAFA	0.9943	0.7146	0.1084	15.15	0.1936	24.8	1/982	1/7748
SNV	Breast	SPEN_S2187F_6	HLA-B15:01	AEASAFAAY	0.9453	0.9342	0.0917	21.18	0.1453	24.8	1/982	1/7748
SNV	Breast	SPEN_S2187F_8	HLA-B15:01	KLAEASAFAAY	1	0.9609	0.2672	332.67	0.4491	24.8	1/982	1/7748
SNV	Breast	SPG21_R199K_5	HLA-B08:01	ELASKLTL	0.9997	0.7914	0.3244	37.6	0.0972	82.05	1/982	1/7748
SNV	Breast	SPOP_R221H_5	HLA-B15:01	ILAAHSPVF	0.9986	0.8948	0.0201	4.55	0.047	36.33	1/982	1/7748
SNV	Breast	SPOP_R221H_5	HLA-C03:03	ILAAHSPVF	0.9181	0.9879	0.797	154.11	0.3256	36.33	1/982	1/7748
SNV	Breast	SSH1_S265N_3	HLA-A02:01	MMNQDLENV	0.9974	0.5883	0.2206	6.46	0.1228	10.59	1/982	1/7748
SNV	Breast	SSH1_S265N_4	HLA-A02:01	IMMNQDLENV	0.9981	0.548	0.2851	57.42	0.3202	10.59	1/982	1/7748
SNV	Breast	SYT11_G293R_1	HLA-B15:01	RELQVSLSY	0.9482	0.9323	0.169	55.65	0.2295	11.4	1/982	1/7748
SNV	Breast	SYT11_G293R_3	HLA-C07:01	SRRELQVSL	0.9982	0.7277	0.0313	41.57	0.0588	11.4	1/982	1/7748
SNV	Breast	TACC1_A362T_7	HLA-B08:01	DGISKSTGL	0.9053	0.5756	0.6324	167.94	0.2178	24.28	1/982	1/7748
SNV	Breast	TAF4B_P253L_7	HLA-B15:01	VQINLSLTM	0.9989	0.6568	0.0685	12.73	0.1112	3.37	1/982	1/7748
SNV	Breast	TAF4B_P253L_9	HLA-C03:03	AAVQINLSL	0.9996	0.986	0.0081	2.56	0.027	3.37	1/982	1/7748
SNV	Breast	TAF6L_V340M_2	HLA-A02:01	AMLDDYSV	0.945	0.5823	1.9594	441.86	0.6482	11.9	1/982	1/7748
SNV	Breast	TAF6L_V340M_1	HLA-A02:01	MLDDYSVSNA	0.9925	0.5576	0.8694	384.98	0.6178	11.9	1/982	1/7748
SNV	Breast	TBC1D1_R1107K_5	HLA-C03:03	VANGKIQSL	0.9999	0.989	0.0329	2.63	0.0278	29.59	1/982	1/7748
SNV	Breast	TBXAS1_S192N_8	HLA-A02:01	YTTDVVANV	0.9938	0.6718	0.1492	8.74	0.1478	7.56	1/982	1/7748
SNV	Breast	TBXAS1_S192N_8	HLA-C03:03	YTTDVVANV	0.9656	0.9925	0.422	437.82	0.4811	7.56	1/982	1/7748
SNV	Breast	TET2_P656S_4	HLA-B15:01	FQKSSHQVHF	0.9999	0.6806	0.1491	36.47	0.1869	5	1/982	1/7748
SNV	Breast	TGS1_V760M_7	HLA-A02:01	FLKADVMFL	0.988	0.6663	0.054	2.18	0.0496	21.34	1/982	1/7748
SNV	Breast	THRAP3_G290D_6	HLA-B15:01	STLPSDAGY	0.7818	0.7474	0.4595	159.06	0.3414	147.36	1/982	1/7748
SNV	Breast	TNFRSF1B_H215Y_8	HLA-A02:01	SMAPGAVYL	0.9884	0.6883	0.0764	1.58	0.0307	37.06	1/982	1/7748
SNV	Breast	TNFRSF1B_H215Y_8	HLA-B15:01	SMAPGAVY	0.9998	0.896	0.6426	6.53	0.062	37.06	1/982	1/7748
SNV	Breast	TNFRSF1B_H215Y_9	HLA-B15:01	RSMAPGAVY	0.9992	0.8945	0.0595	1.86	0.0098	37.06	1/982	1/7748
SNV	Breast	TNFRSF1B_H215Y_8	HLA-B15:01	SMAPGAVYL	0.9891	0.9166	0.2963	358.27	0.4617	37.06	1/982	1/7748
SNV	Breast	TNFRSF1B_H215Y_10	HLA-B15:01	TRSMAPGAVY	0.8978	0.8666	1.7237	66.62	0.2489	37.06	1/982	1/7748
SNV	Breast	TNFRSF1B_H215Y_8	HLA-C03:03	SMAPGAVYL	0.9952	0.9896	0.118	7.38	0.0655	37.06	1/982	1/7748
SNV	Breast	TRAF1_H180Y_9	HLA-B15:01	SQEELALQY	0.9972	0.8519	0.1963	23.09	0.1516	5.6	1/982	1/7748
SNV	Breast	TRAK1_P605L_7	HLA-A02:01	GILDPRLGV	0.9853	0.8463	0.6281	46.31	0.2943	24.85	1/982	1/7748
SNV	Breast	TRAK1_P605L_6	HLA-A02:01	ILDPRLGVV	0.988	0.8811	0.4392	20.98	0.2214	24.85	1/982	1/7748
SNV	Breast	TRAK1_P605L_2	HLA-B15:01	RLGVVTKGF	0.9526	0.9572	0.505	435.1	0.4947	24.85	1/982	1/7748
SNV	Breast	TRAM1L1_L318F_9	HLA-C03:03	YVTWNLITF	0.9896	0.974	0.1945	152.08	0.3238	13.02	1/982	1/7748
SNV	Breast	TRAPPC10_R946K_4	HLA-C03:03	VPFKTTHSL	0.9915	0.9831	0.5685	39.25	0.1835	5.88	1/982	1/7748
SNV	Breast	TRERF1_G230E_7	HLA-B15:01	GQHPTQEHLY	1	0.6342	0.2545	6.17	0.059	11.27	1/982	1/7748
SNV	Breast	TRERF1_G230E_7	HLA-B15:01	GQHPTQEHLYY	1	0.6057	0.4778	293.1	0.4276	11.27	1/982	1/7748
SNV	Breast	TRIO_P2100A_2	HLA-B15:01	KAVQRIMKY	0.9815	0.8827	0.2448	14.9	0.1205	20.87	1/982	1/7748
SNV	Breast	TRPM4_C310Y_1	HLA-A02:01	YLAETLEDT	0.9819	0.7611	0.496	81.43	0.3651	38.25	1/982	1/7748
SNV	Breast	TRPM4_C310Y_1	HLA-A02:01	YLAETLEDTL	0.9936	0.7269	0.7134	5.62	0.1128	38.25	1/982	1/7748
SNV	Breast	TRPM4_C310Y_10	HLA-B15:01	VAGSGGAADY	0.9761	0.8885	0.6984	436.81	0.4954	38.25	1/982	1/7748
SNV	Breast	TRPM4_C310Y_4	HLA-C03:03	AADYLAETL	0.9992	0.9871	0.1474	164.97	0.3349	38.25	1/982	1/7748
SNV	Breast	TTC30B_A195T_6	HLA-B15:01	LSYNLTLAY	0.9993	0.9185	0.0979	38.07	0.1906	16.35	1/982	1/7748
SNV	Breast	TVP23C_S273F_8	HLA-B08:01	GPKFHLAF	0.9964	0.9028	1.2486	460.64	0.3226	1.03	1/982	1/7748
SNV	Breast	UBR4_D1167N_7	HLA-B15:01	ATLQLINTY	0.9691	0.9173	0.2165	8.35	0.0809	20.11	1/982	1/7748
SNV	Breast	UBR4_D1167N_4	HLA-B15:01	QLINTYASF	0.9987	0.8176	0.0278	7	0.0664	20.11	1/982	1/7748
SNV	Breast	UBR4_D1167N_5	HLA-B15:01	LQLINTYASF	0.9994	0.841	0.2783	208.02	0.3765	20.11	1/982	1/7748
SNV	Breast	UBR4_L1926F_6	HLA-C03:03	ITVLQFSAL	0.9991	0.9821	0.1688	414.51	0.4723	20.11	1/982	1/7748
SNV	Breast	UNC5C_R800W_1	HLA-B15:01	WQVEGEGQIF	0.9998	0.8942	0.3566	156.82	0.3396	6.1	1/982	1/7748
SNV	Breast	UQCRC2_D322N_5	HLA-B15:01	QQPFNVSAF	0.9989	0.8008	0.1311	62.44	0.2419	123.46	1/982	1/7748
SNV	Breast	UQCRC2_D322N_1	HLA-B15:01	NVSAFNASY	0.987	0.8627	0.0902	38.93	0.1926	123.46	1/982	1/7748
SNV	Breast	UQCRC2_D322N_6	HLA-B15:01	TQQPFNVSAF	0.9997	0.7633	0.1541	21.07	0.1449	123.46	1/982	1/7748
SNV	Breast	USP43_R737Q_9	HLA-A02:01	SLSDHWLLQL	0.989	0.6478	0.2146	35.5	0.2684	2.97	1/982	1/7748
SNV	Breast	VPS13C_A242V_5	HLA-B15:01	ILNEVDKIIY	0.999	0.7127	0.6189	252.44	0.4023	11.28	1/982	1/7748
SNV	Breast	VWA8_P373S_3	HLA-A02:01	LLSKEIVKV	0.9983	0.5543	0.0703	2.25	0.0511	11.77	1/982	1/7748
SNV	Breast	VWA8_P373S_4	HLA-A02:01	SLLSKEIVKV	0.9983	0.6654	0.3197	6.35	0.1216	11.77	1/982	1/7748
SNV	Breast	WDHD1_E778K_3	HLA-B08:01	ERKFRCVEL	0.9861	0.552	0.2402	390.55	0.3005	5.48	1/982	1/7748
SNV	Breast	WDR62_S893N_7	HLA-B08:01	TPMKPENL	0.9794	0.5062	0.9792	227.3	0.244	3.31	1/982	1/7748
SNV	Breast	WDR6_S776L_9	HLA-C03:03	TAVCNHISL	0.9998	0.9814	0.0439	29.52	0.1649	101.73	1/982	1/7748
SNV	Breast	WISP2_L184F_1	HLA-A02:01	FVSSLPPGV	0.9906	0.7017	0.0645	4.96	0.1037	12.81	1/982	1/7748
SNV	Breast	WISP2_L184F_9	HLA-B15:01	AQGPQFSGF	0.9988	0.9369	0.0549	7.08	0.0672	12.81	1/982	1/7748
SNV	Breast	ZCCHC14_S649F_7	HLA-C03:03	SSVPADFAI	0.9849	0.975	0.4456	179.47	0.3465	23.97	1/982	1/7748
SNV	Breast	ZFP64_D214N_5	HLA-C03:03	YAAANSSSL	0.9998	0.9765	0.0008	1.16	0.0033	11.14	1/982	1/7748
SNV	Breast	ZMYM6_S337L_9	HLA-B08:01	IPQYHLAML	0.8479	0.6133	0.1575	405.6	0.3056	5.78	1/982	1/7748
SNV	Breast	ZMYM6_S337L_3	HLA-B15:01	AMLNGTIY	0.9972	0.867	1.136	215.13	0.3809	5.78	1/982	1/7748
SNV	Breast	ZMYM6_S337L_4	HLA-B15:01	LAMLNGTIY	0.9951	0.6986	0.1177	95.19	0.2819	5.78	1/982	1/7748
SNV	Breast	ZMYM6_S337L_2	HLA-B15:01	MLNGTIYSF	0.9967	0.7916	0.0061	5.9	0.0574	5.78	1/982	1/7748
SNV	Breast	ZMYM6_S337L_5	HLA-B15:01	HLAMLNGTIY	0.9993	0.5611	0.251	184.89	0.3611	5.78	1/982	1/7748
SNV	Breast	ZMYM6_S337L_3	HLA-B15:01	AMLNGTIYSF	0.9986	0.9011	0.1024	45.37	0.2074	5.78	1/982	1/7748
SNV	Breast	ZNF143_V53I_1	HLA-B15:01	ITLADGSTAY	0.9995	0.8321	0.5175	4.4	0.0452	11.69	1/982	1/7748
SNV	Breast	ZNF143_V53I_2	HLA-B15:01	AITLADGSTAY	0.9995	0.8262	0.5909	58.81	0.2354	11.69	1/982	1/7748
SNV	Breast	ZNF333_A243T_6	HLA-A02:01	NLASVTDQL	0.896	0.5525	0.347	71.97	0.3492	2.77	1/982	1/7748
SNV	Breast	ZNF418_P397L_8	HLA-B15:01	RVHTRERLY	0.9887	0.7294	0.4289	66.78	0.2492	3.47	1/982	1/7748
SNV	Breast	ZNF418_P397L_9	HLA-C07:01	HRVHTRERL	0.9908	0.5121	0.0907	378.19	0.155	3.47	1/982	1/7748
SNV	Breast	ZNF451_P572L_3	HLA-A02:01	TLLSSSTTL	0.9024	0.578	0.3811	80.95	0.3643	8.64	1/982	1/7748
SNV	Breast	ZNF451_P572L_3	HLA-C03:03	TLLSSSTTL	0.8981	0.987	0.8619	168.09	0.3375	8.64	1/982	1/7748
SNV	Breast	ZNF470_P480S_8	HLA-B15:01	RVHTGEKSY	0.9986	0.9317	0.151	3.74	0.037	1.73	1/982	1/7748
SNV	Breast	ZNF470_P480S_10	HLA-B15:01	HQRVHTGEKSY	0.9999	0.7117	0.3871	235.77	0.3928	1.73	1/982	1/7748
SNV	Breast	ZNF551_K130N_7	HLA-B15:01	TTSPVQNSY	0.995	0.8061	0.3175	11.38	0.1046	6.04	1/982	1/7748
SNV	Breast	ZNF551_K130N_9	HLA-B15:01	HQTTSPVQNSY	0.9999	0.7282	0.5175	110.29	0.2955	6.04	1/982	1/7748
SNV	Breast	ZNF551_K130N_1	HLA-C03:03	NSYLGSTSM	0.999	0.9873	0.0861	10.23	0.084	6.04	1/982	1/7748
SNV	Breast	ZNF599_R407C_6	HLA-C03:03	KAFTHCSTF	0.8629	0.9897	0.1061	265.59	0.4002	3.4	1/982	1/7748
SNV	Breast	SULF2_R394Q_7	HLA-A02:01	KLLDTEQPV	0.9976	0.8766	0.0816	3.14	0.0692	312.75	1/982	1/7748
SNV	Breast	TLR4_S126L_7	HLA-C03:04	GAFSGLLSL	0.9995	0.9901	0.0158	3.05	0.032	8.78	1/982	1/7748
SNV	Breast	TNC_K1714Q_7	HLA-C03:04	TAMGSPQEV	0.9974	0.9694	0.0984	17.47	0.1269	37.58	1/982	1/7748
SNV	Breast	ZNF184_G666E_7	HLA-A30:01	HQRIHTEEK	0.9917	0.8682	0.6787	480.27	0.1715	19.03	1/982	1/7748
SNV	Breast	BRWD3_R497W_6	HLA-C04:01	IWDLDWGTKI	0.9996	0.6458	0.2173	252	0.1119	1.12	1/982	1/7748
SNV	Breast	CNKSR1_L59V_1	HLA-C03:04	VILGGVEQL	0.9988	0.9563	0.1787	226.79	0.3786	8.92	1/982	1/7748
SNV	Breast	HOXC6_P22L_5	HLA-B40:01	QDVLLNVAL	0.6148	0.5142	0.3595	222.12	0.5478	3	1/982	1/7748
SNV	Breast	KANK4_V633M_7	HLA-C03:04	SSSSPPMEI	0.9938	0.9825	0.0734	412.29	0.4714	1.52	1/982	1/7748
SNV	Breast	MROH1_A272T_8	HLA-C03:04	KLLPGILTL	0.9374	0.9969	0.1919	21.46	0.144	5.69	1/982	1/7748
SNV	Breast	ORC3_E75K_7	HLA-C04:01	LFDNLIKF	0.9999	0.6753	0.0594	44.78	0.0536	9.8	1/982	1/7748
SNV	Breast	ORC3_E75K_7	HLA-C04:01	LFDNLIKFL	0.9994	0.7016	0.0069	3.2	0.0084	9.8	1/982	1/7748
SNV	Breast	ORC3_E75K_8	HLA-C03:04	NLFDNLIKF	0.8355	0.9832	0.3901	448.68	0.4851	9.8	1/982	1/7748
SNV	Breast	TFAP4_P227S_1	HLA-C03:04	SAPTHHPTV	0.8972	0.9627	0.0866	470.1	0.4926	1.24	1/982	1/7748
SNV	Breast	TOX4_V617M_9	HLA-C03:04	VASRNSNTM	0.9981	0.9928	0.0734	30.67	0.1672	21.22	1/982	1/7748
SNV	Breast	UBP1_S476L_3	HLA-C03:04	IALEVARKL	0.9993	0.9855	0.0734	8.27	0.0705	18.15	1/982	1/7748
SNV	Breast	UTRN_E1022K_4	HLA-C03:04	RAFKADSTV	0.842	0.9872	0.2661	27.08	0.1597	23.6	1/982	1/7748
SNV	Breast	ZDHHC11_M380I_9	HLA-C03:04	RVHPDGGSI	0.8776	0.9888	0.384	163.68	0.3339	1.21	1/982	1/7748
SNV	Breast	ZFAND1_H42Y_4	HLA-B40:01	RESYGCPEV	0.9884	0.6377	0.1814	161.19	0.5104	11.82	1/982	1/7748
SNV	Breast	ZNF518A_Q346E_8	HLA-C03:04	RSIEKNTEV	0.955	0.9964	0.0984	162.05	0.3325	2.74	1/982	1/7748
SNV	Breast	AFG3L2_G775S_6	HLA-B57:03	TSLPESLKDW	0.9926	0.9595	0.2037	7.28	0.0713	46.94	1/982	1/7748
SNV	Breast	GYS1_A697V_9	HLA-C12:03	RAPEWPRRV	0.576	0.9942	0.6194	146.08	0.6278	62.7	1/982	1/7748
SNV	Breast	IGHV3-30_V30M_2	HLA-C12:03	GMVQPGRSL	0.9738	0.9832	1.1558	321.09	0.9017	1.67	1/982	1/7748
SNV	Breast	ITSN2_S236L_8	HLA-B57:03	NSPKTGTLEW	0.9661	0.9756	0.325	159.31	0.3895	13.97	1/982	1/7748
SNV	Breast	MTUS2_R589C_1	HLA-A02:01	CLLNTSPKV	0.9913	0.5536	0.2069	464.09	0.659	2.54	1/982	1/7748
SNV	Breast	RANBP17_Q974P_4	HLA-A02:01	FMQPNPDVL	0.9868	0.5814	0.4415	11.21	0.1678	5.71	1/982	1/7748
SNV	Breast	RANBP17_Q974P_4	HLA-C12:03	FMQPNPDVL	0.9985	0.9777	0.2075	56.4	0.3893	5.71	1/982	1/7748
SNV	Breast	SLC12A2_V329I_5	HLA-C12:03	MMATIVTTI	0.9967	0.9778	0.4559	26.15	0.2499	277.24	1/982	1/7748
SNV	Breast	SMG8_D306A_4	HLA-A02:01	ALEAQIYRI	0.975	0.5547	0.6029	41.96	0.2847	25.34	1/982	1/7748
SNV	Breast	WBSCR22_S209L_7	HLA-C12:03	CLFSGPLTF	0.8532	0.9891	0.1929	212.67	0.7562	44	1/982	1/7748
SNV	Breast	BPIFB2_T334P_6	HLA-C03:04	HTNNAPLRL	0.9957	0.9544	0.5296	203.33	0.3636	6.53	1/982	1/7748
SNV	Breast	DOCK2_V407M_3	HLA-B08:01	TVMARKLGF	0.9051	0.7481	0.3749	287.6	0.2677	8.35	1/982	1/7748
SNV	Breast	DOCK2_V407M_9	HLA-C03:04	HLVDRTTVM	0.9871	0.9887	0.1374	17.57	0.1274	8.35	1/982	1/7748
SNV	Breast	NDN_R142H_6	HLA-B08:01	RSILRHTSL	0.9948	0.6594	0.0456	10.07	0.0391	9.95	1/982	1/7748
SNV	Breast	NDN_R142H_6	HLA-C03:04	RSILRHTSL	0.996	0.9928	0.4733	128.44	0.3006	9.95	1/982	1/7748
SNV	Breast	ABCA2_E2212K_4	HLA-A02:01	FLDKPTTGM	0.9823	0.7184	0.2478	2.52	0.0558	29.3	1/982	1/7748
SNV	Breast	ABCA2_E2212K_4	HLA-C02:02	FLDKPTTGM	0.9803	0.9949	0.3033	13.23	0.027	29.3	1/982	1/7748
SNV	Breast	ADNP_D1082N_3	HLA-C02:02	MTNGVAEPM	0.7506	0.9338	0.0624	224.62	0.285	85.36	1/982	1/7748
SNV	Breast	AFF3_F53L_3	HLA-A02:01	SLLSEPYKT	0.9094	0.7797	0.6827	229.4	0.5292	47.41	1/982	1/7748
SNV	Breast	ANK3_D4235H_3	HLA-C07:02	CRHSITSYL	0.7994	0.8119	0.0676	378.23	0.3562	11.82	1/982	1/7748
SNV	Breast	ANK3_E2632Q_3	HLA-B07:02	SPQKVLLTEL	0.9818	0.5612	0.0882	8.58	0.0998	11.82	1/982	1/7748
SNV	Breast	ARHGAP32_S736C_10	HLA-B07:02	RPRSSSDALC	0.9927	0.5704	0.3591	50.73	0.207	17.14	1/982	1/7748
SNV	Breast	ARMC7_E71K_7	HLA-A02:01	SLSEENKTL	0.837	0.7094	0.7411	149.58	0.4576	15.7	1/982	1/7748
SNV	Breast	ARMC7_E71K_7	HLA-A02:01	SLSEENKTLV	0.9232	0.681	0.8694	449.32	0.6519	15.7	1/982	1/7748
SNV	Breast	ARMCX2_E565Q_6	HLA-C07:02	SYVESQILI	0.5513	0.8794	0.512	319.11	0.3312	105.13	1/982	1/7748
SNV	Breast	C1QTNF2_L319Q_7	HLA-A02:01	SLFTGFQIYA	0.988	0.6225	0.2542	51.2	0.3054	3.31	1/982	1/7748
SNV	Breast	CDCA4_S59L_2	HLA-A02:01	RLVLIANTV	0.9757	0.6462	0.3867	285.1	0.5644	25.97	1/982	1/7748
SNV	Breast	CLSTN1_D716N_1	HLA-A02:01	NLDTCEVTV	0.9722	0.8499	0.613	237.6	0.5348	193.9	1/982	1/7748
SNV	Breast	CSTF3_P614S_5	HLA-B07:02	FPVPSAAVV	0.9816	0.515	0.0844	54.43	0.213	17.7	1/982	1/7748
SNV	Breast	CTDSPL_E98K_6	HLA-A24:02	KYLLPKVTV	0.9868	0.7302	0.1545	28.05	0.3042	80.55	1/982	1/7748
SNV	Breast	CTDSPL_E98K_6	HLA-A24:02	KYLLPKVTVL	0.9948	0.6461	0.2815	38	0.3367	80.55	1/982	1/7748
SNV	Breast	CTDSPL_E98K_5	HLA-A02:01	YLLPKVTVL	0.9924	0.8791	0.0703	1.18	0.011	80.55	1/982	1/7748
SNV	Breast	CTDSPL_E98K_5	HLA-C07:02	YLLPKVTVL	0.7705	0.9884	0.2011	14.34	0.0635	80.55	1/982	1/7748
SNV	Breast	CTDSPL_E98K_5	HLA-C02:02	YLLPKVTVL	0.812	0.9942	0.3409	10.16	0.0178	80.55	1/982	1/7748
SNV	Breast	DROSHA_E1351Q_5	HLA-C07:02	KYRQQLKEM	0.8207	0.9334	0.3874	446.19	0.3806	34.79	1/982	1/7748
SNV	Breast	DYRK1A_R16W_2	HLA-C07:02	VWLAPSFSF	0.7415	0.9804	0.8293	488.12	0.3939	31.01	1/982	2/7748
SNV	Breast	FRMD4A_D78Y_1	HLA-C07:02	YRRVLEHDF	0.7736	0.9278	0.1631	202.12	0.2711	7.23	1/982	1/7748
SNV	Breast	GLB1_A446P_2	HLA-B07:02	VPVDGIPQGVL	0.9967	0.5186	0.2906	437.93	0.3903	70.51	1/982	1/7748
SNV	Breast	GLB1_A446P_5	HLA-C02:02	RAYVPVDGI	0.6993	0.9496	0.9376	462.68	0.4489	70.51	1/982	1/7748
SNV	Breast	HMCN1_S2114F_9	HLA-A02:01	IMGEEQNVFV	0.9961	0.6826	0.6574	429.09	0.6417	10.43	1/982	1/7748
SNV	Breast	HNRNPA2B1_E42Q_4	HLA-A24:02	NYYQQWGKL	0.99	0.6907	0.0951	18.32	0.2668	285.46	1/982	1/7748
SNV	Breast	IDE_Q718E_8	HLA-A02:01	RLKAFIPEL	0.9881	0.7132	0.2669	6.01	0.1176	19.36	1/982	1/7748
SNV	Breast	IDE_Q718E_4	HLA-C02:02	FIPELLSRL	0.712	0.9643	0.6219	105.54	0.1655	19.36	1/982	1/7748
SNV	Breast	ITK_S499F_2	HLA-C07:02	VFDFGMTRF	0.9871	0.9721	0.3336	288.54	0.3163	1.1	1/982	1/7748
SNV	Breast	ITK_S499F_3	HLA-C02:02	KVFDFGMTRF	0.9966	0.9678	0.2844	49.17	0.1033	1.1	1/982	1/7748
SNV	Breast	KIF22_S445N_4	HLA-A02:01	RLLNLDRLL	0.9634	0.5291	0.992	191.63	0.5	41.04	1/982	1/7748
SNV	Breast	KIF22_S445N_8	HLA-C07:02	AMLERLLNL	0.6993	0.9599	0.648	206.66	0.2738	41.04	1/982	1/7748
SNV	Breast	LAG3_S360L_7	HLA-B07:02	TPKSFGLPGSL	1	0.5571	0.1388	41.46	0.1938	1.65	1/982	1/7748
SNV	Breast	LAG3_S360L_5	HLA-C02:02	KSFGLPGSL	0.8308	0.9914	0.0815	108.82	0.1695	1.65	1/982	1/7748
SNV	Breast	MAP2_L324V_10	HLA-B07:02	SPFQGGSFTV	0.9902	0.5046	0.1524	13.98	0.1367	3.08	1/982	1/7748
SNV	Breast	MGA_L2403V_7	HLA-C07:02	KAPPIPVKL	0.9082	0.9332	0.2865	107.52	0.2014	9.36	1/982	1/7748
SNV	Breast	MGA_L2403V_7	HLA-C02:02	KAPPIPVKL	0.7341	0.9844	0.0597	47.92	0.1011	9.36	1/982	1/7748
SNV	Breast	MMP28_E104D_7	HLA-A24:02	SYAAWADRI	0.9891	0.6383	0.1133	4.73	0.1398	6.45	1/982	1/7748
SNV	Breast	MTOR_E2388Q_8	HLA-A02:01	RMLTNAMQV	0.992	0.5894	0.132	22.9	0.2289	22.69	1/982	1/7748
SNV	Breast	NOP58_Q23E_8	HLA-A02:01	VLNEKKLEEV	0.9844	0.8475	1.0546	165.24	0.4746	51.76	1/982	1/7748
SNV	Breast	OXCT1_Q517H_7	HLA-A02:01	KLMPMQHIA	0.9897	0.5177	0.1339	140.53	0.4469	25	1/982	1/7748
SNV	Breast	PRUNE2_R2223K_1	HLA-C07:02	KRIPRIENV	0.8831	0.9676	0.1285	26.37	0.0909	2.95	1/982	1/7748
SNV	Breast	PTPRF_H1904N_7	HLA-A02:01	YLGSFDNYA	0.9913	0.6006	0.1465	15.44	0.1953	319.54	1/982	1/7748
SNV	Breast	RANBP6_C568Y_5	HLA-A02:01	KTIEYISHI	0.9807	0.5812	0.0931	35.37	0.2681	20.8	1/982	1/7748
SNV	Breast	RANBP6_C568Y_1	HLA-A02:01	YISHIGLAV	0.9947	0.5443	0.0484	26.6	0.2415	20.8	1/982	1/7748
SNV	Breast	RANBP6_C568Y_5	HLA-C02:02	KTIEYISHI	0.7593	0.9806	0.0764	26.24	0.0591	20.8	1/982	1/7748
SNV	Breast	RANBP6_C568Y_1	HLA-C02:02	YISHIGLAV	0.7278	0.9302	0.2175	153.3	0.223	20.8	1/982	1/7748
SNV	Breast	RIPK1_A270S_6	HLA-A02:01	KLCWESNPEA	0.9363	0.8523	1.0606	181.1	0.4903	46.65	1/982	1/7748
SNV	Breast	RLF_C1871Y_5	HLA-A02:01	ALTDYGELA	0.9696	0.515	0.5313	189.06	0.4977	19.23	1/982	1/7748
SNV	Breast	RLF_C1871Y_5	HLA-A02:01	ALTDYGELAL	0.9815	0.6113	0.8135	123.54	0.4249	19.23	1/982	1/7748
SNV	Breast	RRP7A_H109Y_3	HLA-C07:02	FFYPKPVPGF	0.9935	0.9485	0.2943	55.84	0.1427	31.54	1/982	1/7748
SNV	Breast	SLC13A3_D581N_1	HLA-A02:01	NMYSVNVTA	0.9665	0.6525	0.2542	101.66	0.3936	1.37	1/982	1/7748
SNV	Breast	SLC13A3_D581N_7	HLA-C07:02	TFPDWANMY	0.5709	0.9963	0.2671	293.15	0.3186	1.37	1/982	1/7748
SNV	Breast	SPEG_F1413L_2	HLA-A02:01	TLNHVEAQV	0.9954	0.5632	0.324	19.23	0.2141	2.07	1/982	1/7748
SNV	Breast	SRL_S107Y_2	HLA-C07:02	KYTMINYLL	0.5594	0.8158	1.3975	217.76	0.2799	1.32	1/982	1/7748
SNV	Breast	TAF1_R804Q_7	HLA-C02:02	RANTHIQDF	0.6622	0.9816	0.2175	246.96	0.3006	19.57	1/982	1/7748
SNV	Breast	TAF1_R804Q_3	HLA-C02:02	HIQDFLQVF	0.6726	0.977	0.1016	305.22	0.3466	19.57	1/982	1/7748
SNV	Breast	TAP1_S534Y_2	HLA-C07:02	GYSEKIFEY	0.7651	0.966	0.1184	35.12	0.1076	76.44	1/982	1/7748
SNV	Breast	TSHZ2_M953I_3	HLA-A02:01	FQIKDMTRL	0.9661	0.6168	0.3449	277.91	0.5602	11.72	1/982	1/7748
SNV	Breast	TSHZ2_M953I_3	HLA-C02:02	FQIKDMTRL	0.8349	0.9882	1.4241	84	0.143	11.72	1/982	1/7748
SNV	Breast	TTC26_R445T_8	HLA-A02:01	YIMNKKPTL	0.9653	0.5752	0.4094	18.41	0.2104	10.46	1/982	1/7748
SNV	Breast	TTC26_R445T_8	HLA-C07:02	YIMNKKPTL	0.8137	0.8783	0.9604	85.35	0.1788	10.46	1/982	1/7748
SNV	Breast	TTC26_R445T_8	HLA-C02:02	YIMNKKPTL	0.8175	0.9732	0.6029	101.35	0.1603	10.46	1/982	1/7748
SNV	Breast	XPO1_F1011L_9	HLA-A02:01	SLNQDIPAL	0.9699	0.7659	0.2206	1.91	0.0426	47.95	1/982	1/7748
SNV	Breast	XPO1_F1011L_10	HLA-A02:01	FSLNQDIPAL	0.9085	0.627	1.1233	8.37	0.1442	47.95	1/982	1/7748
SNV	Breast	XPO1_F1011L_9	HLA-C02:02	SLNQDIPAL	0.5644	0.9649	0.9376	150.43	0.2199	47.95	1/982	1/7748
SNV	Breast	ZNF638_L174F_1	HLA-C07:02	FRDIRMRKM	0.8588	0.9258	0.1019	12.59	0.0581	31.91	1/982	1/7748
SNV	Breast	ZNHIT6_D366Y_5	HLA-C07:02	KRVPYDKTI	0.9179	0.7642	0.2351	341.51	0.3412	19.07	1/982	1/7748
SNV	Breast	ZWINT_E18K_8	HLA-A02:01	AALEVLAKV	0.9754	0.7429	0.2955	217.88	0.5208	25.45	1/982	1/7748
SNV	Breast	ZWINT_E18K_1	HLA-A02:01	KVAGILEPV	0.9951	0.5989	0.1409	5.91	0.1164	25.45	1/982	1/7748
SNV	Breast	HECW2_I1478V_9	HLA-A24:03	GYHDNHIVVRW	0.9998	0.5652	0.4206	12.95	0.3912	3.82	1/982	1/7748
SNV	Breast	RPUSD4_V232M_9	HLA-C07:01	YRMDDGKMM	0.9974	0.506	0.073	3.92	0.0081	17.22	1/982	1/7748
SNV	Breast	ZNF420_K398R_1	HLA-C17:01	RMFSHGSQL	0.7763	0.9251	0.0602	53.39	0.1433	12	1/982	1/7748
SNV	Breast	ZNF420_K398R_1	HLA-C01:02	RMFSHGSQL	0.6513	0.9456	0.053	369.14	0.0366	12	1/982	1/7748
SNV	Breast	ZNF606_E719D_5	HLA-C17:01	KAFNDSSSL	0.8083	0.612	0.0731	389.68	0.4231	11.13	1/982	1/7748
SNV	Breast	FAM63A_K178M_1	HLA-B35:01	MPQEKSEGL	0.9783	0.8568	0.318	117.12	0.3236	61.49	1/982	1/7748
SNV	Breast	FOLH1_E425V_1	HLA-A24:02	VFGLLGSTEW	0.9868	0.8436	0.7592	243.78	0.5769	4.6	1/982	1/7748
SNV	Breast	FOLH1_E425V_8	HLA-B35:01	FASWDAEVF	0.9949	0.9677	0.034	16.08	0.1629	4.6	1/982	1/7748
SNV	Breast	FOLH1_E425V_8	HLA-C03:03	FASWDAEVF	0.9993	0.9947	0.129	439.58	0.4818	4.6	1/982	1/7748
SNV	Breast	PID1_A214T_8	HLA-B35:01	EAKKLAHTM	0.8279	0.7879	0.3155	164.84	0.3586	1.19	1/982	1/7748
SNV	Breast	PID1_A214T_4	HLA-B35:01	LAHTMMEAF	0.993	0.9051	0.031	309.21	0.4284	1.19	1/982	1/7748
SNV	Breast	PORCN_E441V_1	HLA-A24:02	VLSWASHWVTF	0.9969	0.5777	1.294	113.79	0.4708	8.32	1/982	1/7748
SNV	Breast	PORCN_E441V_8	HLA-C03:03	YTVHKWSVL	0.9994	0.9592	0.0452	204.36	0.3643	8.32	1/982	1/7748
SNV	Breast	RPS4X_N224H_7	HLA-B35:01	FATRLSHIF	0.9916	0.8314	0.0357	64.87	0.2674	2244.58	1/982	1/7748
SNV	Breast	RPS4X_N224H_7	HLA-C03:03	FATRLSHIF	0.9995	0.9896	0.185	364.85	0.4516	2244.58	1/982	1/7748
SNV	Breast	TTC9C_T151S_6	HLA-A24:02	RYLQLSQSEL	0.9846	0.6541	0.3285	453.83	0.6801	40.53	1/982	1/7748
SNV	Breast	HAS3_D129G_5	HLA-B14:02	NRQEGAYML	0.9975	0.931	0.0914	58.47	0.022	8.39	1/982	1/7748
SNV	Breast	IDI1_P222H_6	HLA-C05:01	TLNPDHNEI	0.9967	0.9257	0.2823	85.05	0.2078	59.94	1/982	1/7748
SNV	Breast	TLR7_G672D_4	HLA-C05:01	VFDDMPPNL	0.9998	0.8865	0.0568	6.33	0.068	3.75	1/982	1/7748
SNV	Breast	TLR7_G672D_5	HLA-C05:01	GVFDDMPPNL	0.9989	0.9262	0.5234	481.17	0.3985	3.75	1/982	1/7748
SNV	Breast	TLR7_G672D_4	HLA-C08:02	VFDDMPPNL	0.9996	0.9044	0.0644	146.17	0.0787	3.75	1/982	1/7748
SNV	Breast	FILIP1L_T941M_1	HLA-B14:02	MPKQRITIL	0.9982	0.6993	0.0575	294.36	0.0668	16.78	1/982	1/7748
SNV	Breast	FILIP1L_T941M_1	HLA-B35:01	MPKQRITIL	0.9612	0.9039	0.5334	123.47	0.329	16.78	1/982	1/7748
SNV	Breast	HECW2_A1533S_8	HLA-B14:02	EKWGKITSL	0.9951	0.6211	0.0691	38.3	0.0165	5.1	1/982	1/7748
SNV	Breast	MMP16_F405L_8	HLA-B35:01	NSDGNFVLF	0.7124	0.9366	0.4055	435.28	0.4715	3.35	1/982	1/7748
SNV	Breast	MMP16_F405L_3	HLA-B35:01	FVLFKGNKY	0.8573	0.6735	0.2156	241.77	0.3979	3.35	1/982	1/7748
SNV	Breast	MMP16_F405L_8	HLA-C04:01	NSDGNFVLF	0.9997	0.7859	0.0663	366.42	0.132	3.35	1/982	1/7748
SNV	Breast	MMP16_F405L_8	HLA-C08:02	NSDGNFVLF	0.9994	0.9383	0.0459	150.04	0.0799	3.35	1/982	1/7748
SNV	Breast	MYH11_A461D_5	HLA-C04:01	ILDIDGFEI	0.9997	0.5441	0.147	492.62	0.1539	4.03	1/982	1/7748
SNV	Breast	MYH11_A461D_5	HLA-C08:02	ILDIDGFEI	0.9987	0.9277	0.0655	25.83	0.0358	4.03	1/982	1/7748
SNV	Breast	SLC9A7_D572N_7	HLA-B35:01	DPPPNNNSF	0.9601	0.6914	0.3468	201.98	0.3794	12.96	1/982	1/7748
SNV	Breast	TRAPPC10_E1018K_4	HLA-C08:02	WTEKPPPSL	0.9999	0.9703	0.0902	351.75	0.1196	5.64	1/982	1/7748
SNV	Breast	CARD11_T14M_9	HLA-B18:01	PEMDDYMEM	0.5441	0.904	0.7724	381.49	0.2426	7.99	1/982	1/7748
SNV	Breast	CARD11_T14M_8	HLA-C05:01	EMDDYMEML	0.9998	0.9057	0.0841	18.57	0.1198	7.99	1/982	1/7748
SNV	Breast	EHD2_A509T_3	HLA-A02:01	ALTSHLIEA	0.9966	0.8217	0.2851	15.37	0.1949	60.04	1/982	1/7748
SNV	Breast	EHD2_A509T_6	HLA-B18:01	EEFALTSHL	0.9939	0.9491	0.0466	12.02	0.0672	60.04	1/982	1/7748
SNV	Breast	ERCC4_R589W_7	HLA-B18:01	AELTFVWQL	0.7384	0.9134	0.2617	349.88	0.2366	2.64	1/982	1/7748
SNV	Breast	POLR3C_G114S_7	HLA-B18:01	EELLLNSKL	0.9847	0.7296	0.1345	66.07	0.1311	44.26	1/982	1/7748
SNV	Breast	TACR2_R62Q_1	HLA-B27:05	QRMRTVTNY	0.9997	0.7109	0.1641	2.13	0.0682	1.75	1/982	1/7748
SNV	Breast	TACR2_R62Q_1	HLA-B27:05	QRMRTVTNYF	1	0.6353	0.0616	8.06	0.1761	1.75	1/982	1/7748
SNV	Breast	TOX_Q442R_2	HLA-B27:05	MRQPLGNQL	0.9993	0.8307	0.1732	2.81	0.0882	5.48	1/982	1/7748
SNV	Breast	TUBGCP2_D604E_3	HLA-C05:01	HAEPTELAL	0.9999	0.963	0.0665	13.47	0.1048	19.83	1/982	1/7748
SNV	Breast	LRCH1_A488T_9	HLA-A24:02	LYPMGSAETL	0.9894	0.5799	0.2527	34.04	0.325	4.81	1/982	1/7748
SNV	Breast	TMEM120B_R266Q_5	HLA-A24:02	SWMWQGLTF	0.9937	0.5448	0.0035	1.52	0.0276	8.49	1/982	1/7748
SNV	Breast	TMEM120B_R266Q_3	HLA-A24:02	MWQGLTFLL	0.9591	0.5855	0.0348	18.7	0.2686	8.49	1/982	1/7748
SNV	Breast	TMEM120B_R266Q_6	HLA-A24:02	QSWMWQGLTF	0.96	0.5566	1.5349	44.98	0.3548	8.49	1/982	1/7748
SNV	Breast	TMEM120B_R266Q_5	HLA-A24:02	SWMWQGLTFL	0.9585	0.6172	0.2249	308.85	0.6124	8.49	1/982	1/7748
SNV	Breast	C11orf84_E174K_6	HLA-B14:01	ARMPAKIVV	0.9964	0.9389	0.1598	376.72	0.0748	24.24	1/982	1/7748
SNV	Breast	C11orf84_E174K_6	HLA-B14:01	ARMPAKIVVL	0.9921	0.875	0.2514	171.37	0.0498	24.24	1/982	1/7748
SNV	Breast	C11orf84_E174K_6	HLA-C07:01	ARMPAKIVV	0.9931	0.8716	0.0705	35.81	0.0534	24.24	1/982	1/7748
SNV	Breast	C11orf84_E174K_6	HLA-C07:01	ARMPAKIVVL	0.9997	0.7987	0.0569	179.07	0.1117	24.24	1/982	1/7748
SNV	Breast	ELMO1_A263V_6	HLA-C07:01	RRQEMVNIL	0.9974	0.7137	0.048	36.46	0.0541	5.31	1/982	1/7748
SNV	Breast	HLCS_E279K_6	HLA-C08:02	KADQSKVKL	0.9999	0.9723	0.0111	42.81	0.0454	25.15	1/982	1/7748
SNV	Breast	MET_R412G_1	HLA-C07:01	GRDEYRTEF	0.986	0.7667	0.0621	35.86	0.0535	17.7	1/982	1/7748
SNV	Breast	MRPL20_F113L_8	HLA-A03:01	AIYEPKTLK	0.9993	0.5142	0.0506	1.22	0.0033	83.29	1/982	1/7748
SNV	Breast	APLNR_T215I_6	HLA-C02:02	FVVPFIIML	0.7787	0.9647	0.17	131.32	0.198	25.76	1/982	1/7748
SNV	Breast	ADAMTSL3_A1126V_9	HLA-B13:02	SQLIYQLVV	0.849	0.8065	0.0745	329.92	0.1161	3.7	1/982	1/7748
SNV	Breast	AP2A2_E341K_3	HLA-C07:02	HRKTNLRYL	0.7887	0.7902	0.1528	73.08	0.1654	27.88	1/982	1/7748
SNV	Breast	ATP10D_R665L_8	HLA-C07:02	SRLPLFSLM	0.9825	0.9499	0.0073	7.84	0.037	8.74	1/982	1/7748
SNV	Breast	ESPL1_E76Q_8	HLA-C07:02	RHLGSLLQL	0.9393	0.9571	0.0862	494.75	0.3959	5.17	1/982	1/7748
SNV	Breast	FIGNL1_S466Y_5	HLA-C07:02	FFSIYASSL	0.5535	0.897	0.7124	326.7	0.3346	11.72	1/982	1/7748
SNV	Breast	GOLPH3_L257V_9	HLA-B13:02	LENAFAPLV	0.9949	0.6495	0.1115	61.21	0.0309	188.04	1/982	1/7748
SNV	Breast	HOOK2_S141L_9	HLA-C07:02	QRIMTLEEL	0.9642	0.9727	0.1925	275.81	0.3096	22.34	1/982	1/7748
SNV	Breast	HOOK2_S141L_9	HLA-C06:02	QRIMTLEEL	0.5809	0.9806	0.106	406.22	0.1867	22.34	1/982	1/7748
SNV	Breast	IGKV5-2_H6D_9	HLA-B13:02	SQVDLLSFL	0.8638	0.5809	0.0571	313.68	0.1116	12.62	1/982	1/7748
SNV	Breast	NHSL2_A647V_1	HLA-B07:02	VPLTSPTAQM	0.9945	0.6364	0.1588	22.62	0.1619	2.04	1/982	1/7748
SNV	Breast	OR2B6_L32F_2	HLA-C07:02	FFISYTVTI	0.5409	0.8113	0.7124	124.17	0.2169	12.2	1/982	1/7748
SNV	Breast	PBRM1_E970Q_2	HLA-B13:02	AQANLQPHI	0.9522	0.8521	0.1166	71.29	0.037	23.88	1/982	1/7748
SNV	Breast	PCDHA12_S584L_4	HLA-B07:02	VPRLVGAGHVV	0.9997	0.7491	0.2422	69.25	0.2334	3.75	1/982	1/7748
SNV	Breast	SPATA6_S213L_9	HLA-C07:02	NYEQPTISL	0.9098	0.9383	0.1449	131.8	0.2233	9.84	1/982	1/7748
SNV	Breast	SVEP1_R3428P_7	HLA-B13:02	VENAIAPGV	0.9632	0.7948	0.1737	96.16	0.0499	5.51	1/982	1/7748
SNV	Breast	TRRAP_V3571M_3	HLA-C07:02	FTMPRVVAV	0.9621	0.9832	1.2493	136.32	0.227	11.52	1/982	1/7748
SNV	Breast	TRRAP_V3571M_3	HLA-C06:02	FTMPRVVAV	0.9993	0.997	0.057	166	0.1215	11.52	1/982	1/7748
SNV	Breast	AXIN1_I149T_8	HLA-B57:01	RAIYRKYTL	0.9917	0.8996	1.9085	170.32	0.3423	17.82	1/982	1/7748
SNV	Breast	AXIN1_I149T_8	HLA-C03:04	RAIYRKYTL	0.9822	0.985	1.0155	44.61	0.1929	17.82	1/982	1/7748
SNV	Breast	AXIN1_I149T_2	HLA-C03:04	YTLDNNGIV	0.7514	0.9857	0.5296	337	0.4388	17.82	1/982	1/7748
SNV	Breast	EDC3_I222V_6	HLA-B15:01	AVFEEVDTY	0.9906	0.963	0.1565	3.07	0.0284	35.75	1/982	1/7748
SNV	Breast	EDC3_I222V_7	HLA-B15:01	AAVFEEVDTY	0.9856	0.9682	1.1119	60.52	0.2385	35.75	1/982	1/7748
SNV	Breast	HSPA12A_A377V_6	HLA-B57:01	KIKRPVAW	0.9992	0.9671	0.6741	379.99	0.4535	5.07	1/982	1/7748
SNV	Breast	IGKV2-24_V50I_2	HLA-B15:01	LIHSDGNTY	0.999	0.6288	0.071	3.5	0.0341	4.25	1/982	1/7748
SNV	Breast	IGKV2-24_V50I_3	HLA-B15:01	SLIHSDGNTY	0.9994	0.5963	0.1541	4.75	0.0494	4.25	1/982	1/7748
SNV	Breast	KIAA2026_I1890N_3	HLA-B15:01	TQNMINGTRF	0.9998	0.7524	0.5559	35.53	0.1846	20.11	1/982	1/7748
SNV	Breast	LXN_A84T_2	HLA-B57:01	TTPEVNFTF	0.9266	0.9829	0.2763	138.64	0.3123	43	1/982	1/7748
SNV	Breast	MSI1_S229R_6	HLA-B15:01	ATTYARRSY	0.791	0.8716	1.6191	274.88	0.4167	27.68	1/982	1/7748
SNV	Breast	MSI1_S229R_3	HLA-C03:04	YARRSYTGL	0.9783	0.9734	0.4733	43.17	0.1905	27.68	1/982	1/7748
SNV	Breast	NCOA3_P412A_4	HLA-B15:01	LQMASSRAY	0.9999	0.8254	0.002	1.66	0.008	32.76	1/982	1/7748
SNV	Breast	NCOA3_P412A_5	HLA-B15:01	GLQMASSRAY	0.9995	0.8361	0.5825	7.72	0.074	32.76	1/982	1/7748
SNV	Breast	NCOA3_P412A_2	HLA-C03:04	MASSRAYGL	0.9995	0.9844	0.1696	111.46	0.2858	32.76	1/982	1/7748
SNV	Breast	NDUFV1_A151T_5	HLA-B15:01	RAMGTRAAY	0.9994	0.9553	0.0441	2.81	0.0246	84.62	1/982	1/7748
SNV	Breast	NDUFV1_A151T_5	HLA-B57:01	RAMGTRAAY	0.99	0.9927	0.4587	23.24	0.172	84.62	1/982	1/7748
SNV	Breast	NET1_T99M_9	HLA-B15:01	RVRPLARVM	0.9935	0.8812	0.7365	110.51	0.2957	248.11	1/982	1/7748
SNV	Breast	NET1_T99M_9	HLA-B57:01	RVRPLARVM	0.9476	0.9687	1.6408	126.12	0.2992	248.11	1/982	1/7748
SNV	Breast	NET1_T99M_7	HLA-C03:04	RPLARVMSL	0.9521	0.9706	1.8745	165.7	0.3355	248.11	1/982	1/7748
SNV	Breast	PXDNL_F513Y_10	HLA-B15:01	TVKPKALAVY	0.9999	0.7166	0.5092	50.75	0.2195	3.46	1/982	1/7748
SNV	Breast	PXDNL_F513Y_6	HLA-B57:01	KALAVYTQL	0.99	0.9553	0.3005	82.82	0.2693	3.46	1/982	1/7748
SNV	Breast	PXDNL_F513Y_6	HLA-C03:04	KALAVYTQL	0.9952	0.9704	0.0816	14.98	0.112	3.46	1/982	1/7748
SNV	Breast	SPG11_S343L_3	HLA-A02:01	QLLSLNETI	0.9734	0.5434	0.5779	189.54	0.4981	13.11	1/982	1/7748
SNV	Breast	TCF20_S701F_3	HLA-B15:01	SKFPGSLRY	0.569	0.8738	0.5637	55.85	0.2298	57.54	1/982	1/7748
SNV	Breast	TCF20_S701F_9	HLA-B57:01	TSRTEPSKF	0.9911	0.9802	0.4233	61.04	0.2473	57.54	1/982	1/7748
SNV	Breast	WDHD1_K1108Q_2	HLA-B15:01	SQKQKPLDF	0.9992	0.7136	0.2065	9.88	0.0938	20.11	1/982	1/7748
SNV	Breast	ZFP62_A541T_2	HLA-B57:01	KTFRNNSGL	0.9648	0.8732	0.9243	162.91	0.3358	25.17	1/982	1/7748
SNV	Breast	C4A_Q848H_5	HLA-C07:02	RRFEHLEL	0.9995	0.9763	0.0606	103.23	0.1973	89.19	1/982	1/7748
SNV	Breast	C4A_Q848H_6	HLA-C07:02	VRRFEHLEL	0.8506	0.9695	0.2402	172.53	0.2525	89.19	1/982	1/7748
SNV	Breast	CNTLN_E1278Q_7	HLA-C02:02	LANEKVQEF	0.9779	0.9688	0.0301	34.89	0.0779	2.24	1/982	1/7748
SNV	Breast	CNTLN_E1278Q_3	HLA-C02:02	KVQEFTTFV	0.7975	0.9667	0.8431	234.15	0.2918	2.24	1/982	1/7748
SNV	Breast	MROH6_D355N_6	HLA-C02:02	MVAHANHHL	0.7379	0.9279	0.0424	147.2	0.2164	2.09	1/982	1/7748
SNV	Breast	P2RY10_L4F_9	HLA-C07:02	NFDKYTETF	0.9806	0.8868	0.0548	198.94	0.2693	4.59	1/982	1/7748
SNV	Breast	RORC_E283K_3	HLA-C07:02	YRKTCQLRL	0.8176	0.9326	0.0826	88.35	0.1822	25.76	1/982	1/7748
SNV	Breast	ZNF257_L446I_9	HLA-C02:02	KAFNRSSYI	0.9754	0.9118	0.4064	184.98	0.2534	4.04	1/982	1/7748
SNV	Breast	ABCA13_R1373H_4	HLA-A02:01	RMLHILDTL	0.9847	0.5084	0.0653	57.55	0.3205	4.41	1/982	1/7748
SNV	Breast	ABCC1_G1362D_3	HLA-C05:01	KIDLHDLRF	0.9997	0.85	0.1775	7.8	0.076	7.64	1/982	1/7748
SNV	Breast	ABTB2_R1015C_5	HLA-A02:01	TLAECVHSV	0.9991	0.7172	0.0085	1.54	0.0276	5.27	1/982	1/7748
SNV	Breast	ACO2_A103S_7	HLA-C05:01	AMQDATSQM	0.9908	0.9849	0.2311	248.01	0.3148	26.57	1/982	1/7748
SNV	Breast	AHRR_V75A_4	HLA-A02:01	RLSASYLRV	0.9912	0.6451	0.1409	169.89	0.4794	1.88	1/982	1/7748
SNV	Breast	ALOX15B_E50D_3	HLA-C05:01	GADEDFQVTL	1	0.9604	0.061	52.26	0.173	2.01	1/982	1/7748
SNV	Breast	APBB2_S492L_2	HLA-A02:01	HLQPIVSIRV	0.9896	0.8166	0.6466	264.6	0.5523	11.22	1/982	1/7748
SNV	Breast	ARHGAP4_A255V_9	HLA-A02:01	LLSLASVNV	0.9857	0.6421	0.3185	70.29	0.3462	4.84	1/982	1/7748
SNV	Breast	ARHGAP4_A255V_7	HLA-A02:01	SLASVNVAV	0.9956	0.736	0.054	1.74	0.0369	4.84	1/982	1/7748
SNV	Breast	ARHGAP4_A255V_10	HLA-A02:01	YLLSLASVNV	0.9963	0.5657	0.1554	42.03	0.2849	4.84	1/982	1/7748
SNV	Breast	ARHGEF40_R1405W_5	HLA-A02:01	ALGEWTLSA	0.9943	0.7511	0.1434	10.22	0.1604	10.36	1/982	1/7748
SNV	Breast	ATP1A1_V817A_5	HLA-C05:01	GTDMAPAISL	1	0.8908	0.1355	415.03	0.3798	345.59	1/982	1/7748
SNV	Breast	ATP9B_P665S_8	HLA-C05:01	GADVAMSSI	0.9999	0.9576	0.101	25.47	0.1344	1.53	1/982	1/7748
SNV	Breast	B4GALNT4_D324G_6	HLA-C05:01	RPDPRGTFF	0.9848	0.9544	0.3505	15.33	0.1108	21.2	1/982	1/7748
SNV	Breast	B4GALNT4_D324G_6	HLA-C05:01	RPDPRGTFFL	0.9985	0.9668	0.8526	316.79	0.3457	21.2	1/982	1/7748
SNV	Breast	BCAP31_A211V_8	HLA-C05:01	KAENQVLVM	0.9999	0.9204	0.1573	256.66	0.3191	316.64	1/982	1/7748
SNV	Breast	BCORL1_W1468L_1	HLA-C05:01	LTDILNILL	0.9999	0.9265	0.0684	2.07	0.0259	3.29	1/982	1/7748
SNV	Breast	BHLHE41_P185T_8	HLA-A02:01	QLLTQQVTL	0.9474	0.7133	0.7568	50.67	0.3041	4.24	1/982	1/7748
SNV	Breast	BTBD3_R404G_6	HLA-C05:01	FAVDKGVFI	0.9822	0.8226	0.1043	35.55	0.1498	38.68	1/982	1/7748
SNV	Breast	CDT1_P182Q_8	HLA-A02:01	ALAQPGLQGL	0.9636	0.7493	0.702	146.84	0.4544	16.37	1/982	1/7748
SNV	Breast	CEP72_T425M_9	HLA-A02:01	ALQAALLEM	0.9792	0.5136	0.6863	186.02	0.4949	1.33	1/982	1/7748
SNV	Breast	CNOT3_I571V_8	HLA-A02:01	HLTERDIVL	0.9453	0.554	1.5705	159.84	0.469	18.15	1/982	1/7748
SNV	Breast	CORO1B_R70H_1	HLA-A02:01	HIDKAYPTV	0.9797	0.6245	0.6165	162.78	0.4721	56.33	1/982	1/7748
SNV	Breast	CORO1B_R70H_1	HLA-C05:01	HIDKAYPTV	1	0.9768	0.0209	4.88	0.0556	56.33	1/982	1/7748
SNV	Breast	CSNK2A1_N262S_6	HLA-C05:01	YIDKYSIEL	1	0.8652	0.001	1.07	0.0026	42.93	1/982	1/7748
SNV	Breast	CYB561D2_V210A_5	HLA-B15:18	IMNQASNAY	0.7622	0.7295	0.0678	151.11	0.083	17.43	1/982	1/7748
SNV	Breast	CYB5R1_Y47N_8	HLA-A02:01	LLDPNEKNL	0.9606	0.5033	1.0335	200.52	0.5073	56.07	1/982	1/7748
SNV	Breast	CYB5R1_Y47N_9	HLA-A02:01	TLLDPNEKNL	0.9472	0.5646	1.1549	491.22	0.6715	56.07	1/982	1/7748
SNV	Breast	CYB5R1_Y47N_8	HLA-C05:01	LLDPNEKNL	0.9999	0.9196	0.0158	3.18	0.0414	56.07	1/982	1/7748
SNV	Breast	CYB5R1_Y47N_8	HLA-C05:01	LLDPNEKNLL	1	0.9036	0.047	29.84	0.1417	56.07	1/982	1/7748
SNV	Breast	CYFIP1_A10V_6	HLA-A02:01	TLEDVLSNV	0.9915	0.7498	0.3779	4.19	0.0903	43.23	1/982	1/7748
SNV	Breast	CYFIP1_A10V_6	HLA-C05:01	TLEDVLSNV	0.9998	0.9579	0.2153	147.48	0.2536	43.23	1/982	1/7748
SNV	Breast	CYLD_V197A_2	HLA-C05:01	FAALDKLEL	0.9996	0.9214	0.3299	280.02	0.3301	6.2	1/982	1/7748
SNV	Breast	DENND4A_T491A_6	HLA-C05:01	CVDVDANTI	0.9997	0.9512	0.1271	247.21	0.3144	4.84	1/982	1/7748
SNV	Breast	DHCR24_R246W_8	HLA-A02:01	KLRFEPVWGL	0.8714	0.8293	1.1395	5.56	0.112	138.71	1/982	1/7748
SNV	Breast	DICER1_A695V_8	HLA-A02:01	RLAERVVVL	0.9977	0.6662	0.3222	2.36	0.053	9.33	1/982	1/7748
SNV	Breast	DICER1_A695V_8	HLA-A02:01	RLAERVVVLI	0.9967	0.5528	0.7489	188.94	0.4976	9.33	1/982	1/7748
SNV	Breast	DICER1_A695V_8	HLA-C05:01	RLAERVVVL	0.9992	0.956	0.8678	54.89	0.1761	9.33	1/982	1/7748
SNV	Breast	DNAJC13_I1888M_3	HLA-A02:01	KLMGPKVRI	0.9869	0.8421	0.5034	11.28	0.1683	11.14	1/982	1/7748
SNV	Breast	DYNC1H1_L1702F_6	HLA-A02:01	KINEWFTLV	0.9968	0.6537	0.026	6.85	0.1275	61.39	1/982	1/7748
SNV	Breast	DYNC1H1_L1702F_6	HLA-C05:01	KINEWFTLV	0.9964	0.9388	1.2899	386.61	0.3709	61.39	1/982	1/7748
SNV	Breast	DYSF_I793T_5	HLA-A02:01	SLPDTVIWM	0.8954	0.5633	0.2955	18.76	0.212	2.62	1/982	1/7748
SNV	Breast	DYSF_I793T_5	HLA-A02:01	SLPDTVIWML	0.969	0.5853	0.3222	34.89	0.2667	2.62	1/982	1/7748
SNV	Breast	DYSF_I793T_5	HLA-C05:01	SLPDTVIWM	0.7281	0.9229	0.3299	127.39	0.2406	2.62	1/982	1/7748
SNV	Breast	DYSF_I793T_4	HLA-C05:01	LPDTVIWML	0.9851	0.9547	0.325	425.57	0.383	2.62	1/982	1/7748
SNV	Breast	EHBP1L1_T1132M_9	HLA-C05:01	VPDKLIVMM	0.9977	0.9261	0.2409	192.91	0.2845	10.4	1/982	1/7748
SNV	Breast	EHD1_T226M_7	HLA-C05:01	KADQIEMQQL	1	0.9833	0.0803	441.76	0.3877	20.97	1/982	1/7748
SNV	Breast	EP300_I1952V_5	HLA-B15:18	FQRPVQHQM	0.8944	0.7129	0.0035	185.12	0.0921	11.72	1/982	1/7748
SNV	Breast	EPC1_Q309H_2	HLA-B15:18	SHFKHQEAM	0.8539	0.8212	0.0219	16.61	0.0193	7.36	1/982	1/7748
SNV	Breast	EXOC1_R124Q_3	HLA-C05:01	YLQKKIDFV	0.9807	0.9294	1.1473	271.74	0.3263	11.37	1/982	1/7748
SNV	Breast	FAF2_R115M_6	HLA-C05:01	ILDIFMFAL	0.9993	0.9308	0.1355	72.1	0.1952	25.12	1/982	1/7748
SNV	Breast	FAM110B_R28H_8	HLA-C05:01	FTSAVPLHI	0.9984	0.9338	0.1904	16.83	0.1152	6.64	1/982	1/7748
SNV	Breast	FAM120A_Y610H_5	HLA-B15:18	RQYVHGVLF	0.6735	0.6179	0.0047	244.11	0.1104	79.91	1/982	1/7748
SNV	Breast	FMO4_K56E_4	HLA-A02:01	RVYESLVTNV	0.9961	0.7406	0.5218	120.41	0.4205	4.75	1/982	1/7748
SNV	Breast	GAA_A495T_1	HLA-A02:01	TLAWWEDMV	0.9738	0.667	0.2256	337.57	0.5918	138.54	1/982	1/7748
SNV	Breast	GAA_A495T_6	HLA-C05:01	FTNPTTLAW	0.7	0.9693	1.7258	82.67	0.2055	138.54	1/982	1/7748
SNV	Breast	GAA_A495T_9	HLA-C05:01	FPDFTNPTTL	0.9994	0.9327	0.2627	422.01	0.3819	138.54	1/982	1/7748
SNV	Breast	GANAB_A751V_6	HLA-A02:01	YLLGDVLLV	0.9985	0.821	0.0015	1.11	0.0083	200.47	1/982	1/7748
SNV	Breast	GANAB_A751V_6	HLA-C05:01	YLLGDVLLV	0.9528	0.9913	1.322	52.93	0.1738	200.47	1/982	1/7748
SNV	Breast	GBA2_M578V_3	HLA-A02:01	YLVSGVMAPV	0.9976	0.6758	0.0669	9.74	0.1566	15.29	1/982	1/7748
SNV	Breast	GFOD2_P296A_1	HLA-C05:01	AQDVPLLYL	0.9998	0.9589	0.0897	9.81	0.0884	12.96	1/982	1/7748
SNV	Breast	GPR153_E367D_3	HLA-A02:01	ALDGGLPQL	0.9946	0.6216	0.2256	1.31	0.0143	6.19	1/982	1/7748
SNV	Breast	GPR153_E367D_4	HLA-A02:01	SALDGGLPQL	0.8252	0.5167	0.8325	18.58	0.2111	6.19	1/982	1/7748
SNV	Breast	GPR153_E367D_3	HLA-C05:01	ALDGGLPQL	1	0.9887	0.0014	1.42	0.0125	6.19	1/982	1/7748
SNV	Breast	GPR153_E367D_4	HLA-C05:01	SALDGGLPQL	0.9998	0.983	0.2104	100.97	0.2217	6.19	1/982	1/7748
SNV	Breast	GPR161_V274A_7	HLA-A02:01	ALITILAVL	0.9483	0.5913	0.2395	41.19	0.2829	5.58	1/982	1/7748
SNV	Breast	GSPT2_I427T_2	HLA-C05:01	STDGPIRL	1	0.8761	0.0311	174.24	0.2728	7.38	1/982	1/7748
SNV	Breast	GSPT2_I427T_3	HLA-C05:01	RSTDGPIRL	0.9995	0.9628	0.5495	54.09	0.1751	7.38	1/982	1/7748
SNV	Breast	HEATR1_Q1033R_1	HLA-A02:01	RLLPMAEQL	0.9923	0.8267	0.3779	4.47	0.0956	19.8	1/982	1/7748
SNV	Breast	HEATR1_V200A_7	HLA-A02:01	SLVTKSAKV	0.9515	0.6532	0.2829	198.25	0.5055	19.8	1/982	1/7748
SNV	Breast	IFI16_N397S_2	HLA-C05:01	NSDPKSMKL	1	0.8505	0.0064	2.59	0.0348	70.93	1/982	1/7748
SNV	Breast	IFI16_N397S_3	HLA-C05:01	RNSDPKSMKL	0.9991	0.9169	1.9676	356.68	0.3607	70.93	1/982	1/7748
SNV	Breast	IL4R_V817M_2	HLA-A02:01	SMGPTYMRV	0.972	0.6582	0.1909	16.86	0.2029	26.94	1/982	1/7748
SNV	Breast	IL4R_V817M_4	HLA-C05:01	FVSMGPTYM	0.9612	0.9087	0.4	19.9	0.1231	26.94	1/982	1/7748
SNV	Breast	INTS2_I1121V_6	HLA-A02:01	PLYEDVMSL	0.7979	0.6095	0.7638	7.06	0.13	6.06	1/982	1/7748
SNV	Breast	ITPR2_M1235T_6	HLA-A02:01	KMNEVTNLA	0.9953	0.5103	0.2489	84.65	0.3701	19.49	1/982	1/7748
SNV	Breast	ITPR2_M1235T_2	HLA-C05:01	VTNLAHTFL	0.998	0.9552	0.8526	231.31	0.306	19.49	1/982	1/7748
SNV	Breast	JDP2_R41H_5	HLA-C05:01	YADIHNLGA	0.9998	0.9234	0.1939	50.11	0.1705	6.5	1/982	1/7748
SNV	Breast	JDP2_R41H_5	HLA-C05:01	YADIHNLGAM	0.9999	0.9143	0.088	39.95	0.1567	6.5	1/982	1/7748
SNV	Breast	JMJD6_F252I_9	HLA-A02:01	QLPTWPPEI	0.9536	0.7202	0.49	232.99	0.5317	12.53	1/982	1/7748
SNV	Breast	KBTBD3_I555M_8	HLA-C05:01	GIEDKIYML	0.9998	0.9709	0.2311	193.94	0.2851	4.04	1/982	1/7748
SNV	Breast	KIAA1033_E986G_6	HLA-B15:18	TRNSAGGTEY	0.8342	0.7556	0.1866	257.56	0.1141	12.66	1/982	1/7748
SNV	Breast	KIF23_M198V_9	HLA-C05:01	QVDPEFADV	0.9995	0.9766	0.1043	52.63	0.1734	9.36	1/982	1/7748
SNV	Breast	KIF23_M198V_4	HLA-C05:01	FADVITVQEF	1	0.9323	0.0803	145.35	0.2519	9.36	1/982	1/7748
SNV	Breast	KIF2A_C225Y_8	HLA-C05:01	PIDEHRIYV	0.9999	0.8582	0.1416	186.08	0.2804	8.99	1/982	1/7748
SNV	Breast	KMT2E_V537I_9	HLA-A02:01	KLSPLRLSI	0.9935	0.5863	0.2669	67.4	0.3408	14.91	1/982	1/7748
SNV	Breast	KPNA2_R366H_1	HLA-C05:01	HQDQIQQVV	0.9997	0.9682	0.1864	128.67	0.2415	326.86	1/982	1/7748
SNV	Breast	LRRC15_C453R_8	HLA-C05:01	GTDTVPVRF	0.9998	0.9297	0.1939	3.99	0.0477	20.76	1/982	1/7748
SNV	Breast	LYST_A3542T_2	HLA-C05:01	YTDNILRL	1	0.8671	0.022	5.37	0.0601	1.75	1/982	1/7748
SNV	Breast	MAP3K12_M224T_6	HLA-A02:01	GIAGGTNYL	0.8947	0.514	0.8485	85.69	0.3717	1.23	1/982	1/7748
SNV	Breast	MAPKBP1_I1029T_5	HLA-C05:01	SVDGTSSDL	0.9994	0.9668	0.043	28.96	0.1403	3.46	1/982	1/7748
SNV	Breast	MBP_N218S_6	HLA-C05:01	RTQDESPVV	0.9996	0.9681	0.702	329.89	0.3508	3.74	1/982	1/7748
SNV	Breast	MBTPS2_A507V_5	HLA-A02:01	VLLAVNVTL	0.9686	0.5059	0.163	3.24	0.071	3.42	1/982	1/7748
SNV	Breast	MBTPS2_A507V_6	HLA-A02:01	SVLLAVNVTL	0.9175	0.5196	1.0606	348.22	0.5968	3.42	1/982	1/7748
SNV	Breast	MBTPS2_A507V_11	HLA-A02:01	ILLGGSVLLAV	0.9982	0.5735	0.5716	98.75	0.3899	3.42	1/982	1/7748
SNV	Breast	MIA3_A1634T_1	HLA-A02:01	TMLQEEPVIV	0.9807	0.5373	0.613	375.99	0.6126	31.16	1/982	1/7748
SNV	Breast	MRPL55_T19A_3	HLA-A03:01	KAAGPALRR	0.944	0.6655	0.489	70.45	0.2493	114.97	1/982	1/7748
SNV	Breast	MRPS2_R110H_1	HLA-C05:01	HLDHDIIDL	0.9997	0.8943	0.047	5.52	0.0614	59.4	1/982	1/7748
SNV	Breast	MYO5B_G1330S_9	HLA-A02:01	YLNEDGELSL	0.9952	0.667	0.6165	2.51	0.0557	37.28	1/982	2/7748
SNV	Breast	MYO5B_G1330S_9	HLA-C05:01	YLNEDGELSL	0.9999	0.9234	0.1381	24.14	0.132	37.28	1/982	1/7748
SNV	Breast	NAV1_R463H_7	HLA-C05:01	RTDSEKHSL	1	0.8698	0.0299	6.51	0.0694	5.06	1/982	1/7748
SNV	Breast	NEIL1_P105L_4	HLA-C05:01	YTALPGPRL	0.9879	0.9828	0.6823	12.87	0.1026	7.32	1/982	1/7748
SNV	Breast	NEK9_Y277H_7	HLA-C05:01	EVDSSQHSL	1	0.9468	0.1064	67.22	0.1903	7.94	1/982	1/7748
SNV	Breast	NID1_P1000S_7	HLA-C05:01	WTDITESSI	0.9999	0.9052	0.1469	19.66	0.1225	36.84	1/982	1/7748
SNV	Breast	NLRC5_Q1169P_4	HLA-A02:01	SLLPLSQTGL	0.9102	0.7829	0.5218	296.89	0.5709	3.1	1/982	1/7748
SNV	Breast	NMT1_E244D_4	HLA-A02:01	KMVDINFLCV	0.9986	0.7902	0.2355	58.68	0.323	17.9	1/982	1/7748
SNV	Breast	NMT1_E244D_3	HLA-C05:01	MVDINFLCV	0.9995	0.9927	0.1501	68.61	0.1917	17.9	1/982	1/7748
SNV	Breast	PAQR3_T196M_3	HLA-A02:01	YLMQQWQRL	0.9939	0.8553	0.079	3.24	0.071	1.96	1/982	1/7748
SNV	Breast	PDZD4_A83V_8	HLA-C05:01	ITFEHIMVL	0.932	0.9815	0.2781	53.08	0.1739	4.48	1/982	1/7748
SNV	Breast	PIEZO1_A1575V_7	HLA-C05:01	YTSQAEVTL	0.9995	0.9333	0.2047	26.1	0.1356	29.33	1/982	1/7748
SNV	Breast	PLEKHA4_M486V_4	HLA-A02:01	QLWVVEDTL	0.8885	0.6495	0.6596	474.88	0.6641	5.4	1/982	1/7748
SNV	Breast	PLEKHA4_M486V_1	HLA-C05:01	VVEDTLAGL	0.9996	0.9673	0.1501	70.85	0.1939	5.4	1/982	1/7748
SNV	Breast	PLEKHA6_R754M_6	HLA-A02:01	SLVPTMQEV	0.995	0.5772	0.1339	1.81	0.0396	26.01	1/982	1/7748
SNV	Breast	PLXNB2_A1653T_6	HLA-B15:18	HAVPPTVKY	0.9728	0.7712	0.0293	104.87	0.0679	115.33	1/982	1/7748
SNV	Breast	PLXNB2_A1653T_7	HLA-B15:18	GHAVPPTVKY	0.9607	0.7234	0.8768	390.47	0.1384	115.33	1/982	1/7748
SNV	Breast	PPIE_A14V_6	HLA-A02:01	YVGGLVEEV	0.9957	0.5832	0.362	6.89	0.1279	12.18	1/982	1/7748
SNV	Breast	PPP2R1A_R183W_4	HLA-A03:01	MVRWAAASK	0.9845	0.7267	0.113	22.53	0.1435	116.68	1/982	7/7748
SNV	Breast	PRDM10_I804T_8	HLA-A03:01	GAELPPSTRK	0.758	0.5358	1.4105	311.53	0.4264	4.16	1/982	1/7748
SNV	Breast	PRDX5_G94V_7	HLA-A02:01	VLFGVPVAF	0.8129	0.7395	0.8842	94.32	0.384	506	1/982	1/7748
SNV	Breast	PRDX5_G94V_1	HLA-A03:01	VAFTPGCSK	0.9714	0.6936	0.1749	226.51	0.3792	506	1/982	1/7748
SNV	Breast	PRKG1_H494R_4	HLA-A03:01	ILDRRGYAK	0.9861	0.5007	0.5357	32.28	0.1707	4.02	1/982	1/7748
SNV	Breast	PSMC3_S50N_5	HLA-A02:01	RLLDNEIKI	0.9975	0.5271	0.2432	2.1	0.0477	150.46	1/982	1/7748
SNV	Breast	PSMC3_S50N_5	HLA-C05:01	RLLDNEIKI	0.9341	0.8827	1.3005	378.35	0.3681	150.46	1/982	1/7748
SNV	Breast	PSMC3_S50N_4	HLA-C05:01	LLDNEIKIM	0.9999	0.9104	0.051	14.79	0.1092	150.46	1/982	1/7748
SNV	Breast	PSME4_L529I_8	HLA-A02:01	VLQERNDITEV	0.9846	0.8311	1.0664	111.82	0.4078	43.26	1/982	1/7748
SNV	Breast	PTK2B_S606I_2	HLA-A02:01	AIDVWMFAV	0.9811	0.5185	0.1134	464.22	0.6591	8.99	1/982	1/7748
SNV	Breast	PTPRU_A656T_1	HLA-A03:01	TLARGLVHY	0.9262	0.5006	0.6409	207.49	0.3678	12.38	1/982	1/7748
SNV	Breast	RCAN1_L124F_1	HLA-A02:01	FQLHKTEFL	0.9788	0.8265	0.1038	264.54	0.5523	11.29	1/982	1/7748
SNV	Breast	RCN1_A62T_7	HLA-A02:01	FQYDHETFL	0.9944	0.585	0.0751	2.34	0.0528	76.39	1/982	1/7748
SNV	Breast	RCN1_A62T_7	HLA-C05:01	FQYDHETFL	0.9967	0.9801	0.5549	60.26	0.1826	76.39	1/982	1/7748
SNV	Breast	RIC8A_R379H_4	HLA-A02:01	KLVHLMTHL	0.9853	0.696	0.043	28.87	0.2485	44.97	1/982	1/7748
SNV	Breast	SACS_A1791T_8	HLA-C05:01	GPDDDPATL	0.9974	0.9726	0.1711	358.68	0.3614	3.25	1/982	1/7748
SNV	Breast	SEC24C_R444S_9	HLA-B15:18	MQFIEGGRSF	0.9943	0.8852	0.0219	84.97	0.0613	12.73	1/982	1/7748
SNV	Breast	SLC12A2_I913M_7	HLA-B15:18	FHDAFDMQY	0.7978	0.7912	0.1326	26.13	0.0295	123.4	1/982	1/7748
SNV	Breast	SLC1A3_T208M_1	HLA-A02:01	MLVGAVINNV	0.9979	0.6514	0.217	143.94	0.451	7.38	1/982	1/7748
SNV	Breast	SLC2A10_A61T_7	HLA-A02:01	LLGALLTSL	0.956	0.7341	0.1909	213.33	0.5174	14.47	1/982	1/7748
SNV	Breast	SLC38A1_R195H_5	HLA-A02:01	YVDGHVLVV	0.9957	0.592	0.1895	2.25	0.051	29.61	1/982	1/7748
SNV	Breast	SLC38A1_R195H_5	HLA-C05:01	YVDGHVLV	1	0.9624	0.0649	8.49	0.079	29.61	1/982	1/7748
SNV	Breast	SLC38A1_R195H_5	HLA-C05:01	YVDGHVLVV	0.9999	0.9793	0.0015	1.12	0.0042	29.61	1/982	1/7748
SNV	Breast	SLC38A1_R195H_5	HLA-C05:01	YVDGHVLVVI	0.9999	0.9619	0.0841	20.59	0.1246	29.61	1/982	1/7748
SNV	Breast	SLMAP_A187V_7	HLA-A02:01	MLEQKLVTL	0.9867	0.5487	0.4938	45.74	0.2931	4.77	1/982	1/7748
SNV	Breast	SLMAP_A187V_7	HLA-C05:01	MLEQKLVTL	0.9999	0.9417	0.0943	36.76	0.1517	4.77	1/982	1/7748
SNV	Breast	SUSD2_D452E_5	HLA-A02:01	SAFGEPHFV	0.9323	0.8228	0.2146	162.7	0.472	1.29	1/982	1/7748
SNV	Breast	SUSD2_D452E_3	HLA-C05:01	FGEPHFVTF	0.9994	0.9923	0.0943	84.75	0.2075	1.29	1/982	1/7748
SNV	Breast	TAOK2_P224L_7	HLA-C05:01	LAERKPLLF	0.9995	0.8441	0.346	476.05	0.3972	12.09	1/982	1/7748
SNV	Breast	TBC1D22B_M467V_4	HLA-A02:01	GLLVLLQNL	0.9307	0.6321	0.5871	121.85	0.4225	14.74	1/982	2/7748
SNV	Breast	TBC1D22B_M467V_1	HLA-A02:01	VLLQNLPTI	0.9868	0.5149	0.1676	2.58	0.0567	14.74	1/982	2/7748
SNV	Breast	TECPR1_D986G_6	HLA-B15:18	LHVGTGQPF	0.8045	0.6705	0.025	31.53	0.0335	7.52	1/982	1/7748
SNV	Breast	TMEM59_S182Y_3	HLA-B15:18	FQYKPEIQY	0.752	0.702	0.0019	39.52	0.0382	70.68	1/982	1/7748
SNV	Breast	TMOD1_Y242H_7	HLA-C05:01	SNDPVAHAL	1	0.9257	0.0158	34.72	0.1487	3.24	1/982	1/7748
SNV	Breast	TMOD1_Y242H_8	HLA-C05:01	RSNDPVAHAL	0.9999	0.973	0.1154	19.49	0.1221	3.24	1/982	1/7748
SNV	Breast	TMTC4_G430R_8	HLA-A02:01	VLLTFGFRA	0.9848	0.6734	0.2016	88.74	0.3762	6.98	1/982	1/7748
SNV	Breast	TNPO3_S216N_5	HLA-A02:01	GVLDNNFMA	0.9421	0.5029	0.7316	475.04	0.6642	32.38	1/982	1/7748
SNV	Breast	TRNAU1AP_R169W_8	HLA-A02:01	GLGSKPVWL	0.9153	0.8015	0.7638	397.95	0.6251	17.59	1/982	1/7748
SNV	Breast	TRPV2_R316Q_4	HLA-A02:01	ILQQEFSGL	0.9606	0.7272	0.5649	473.63	0.6635	2.93	1/982	1/7748
SNV	Breast	TRPV2_R316Q_7	HLA-B15:18	FRHILQQEF	0.8394	0.8528	0.0064	52.88	0.0463	2.93	1/982	1/7748
SNV	Breast	TSSC1_L160P_8	HLA-A02:01	SLADNHIPL	0.9944	0.57	0.1339	3.69	0.0773	12.4	1/982	1/7748
SNV	Breast	TSSC1_L160P_8	HLA-C05:01	SLADNHIPL	0.9868	0.8614	0.6946	370.49	0.3655	12.4	1/982	1/7748
SNV	Breast	TSSC1_L160P_7	HLA-C05:01	LADNHIPLW	0.9973	0.9562	0.367	236.12	0.3086	12.4	1/982	1/7748
SNV	Breast	TUBD1_R124W_7	HLA-A02:01	SIMNIIWKEV	0.9872	0.7668	1.0764	165.67	0.4751	11.14	1/982	1/7748
SNV	Breast	UBR3_L634P_5	HLA-B15:18	FHLPPHRYY	0.7665	0.791	0.1815	9.62	0.0106	9.96	1/982	1/7748
SNV	Breast	VPS13D_V3729I_7	HLA-A02:01	GLHGLVIQA	0.9723	0.7647	0.3076	19.21	0.214	4.56	1/982	1/7748
SNV	Breast	WNK1_A1977V_2	HLA-C05:01	VVSPPFMDL	0.9874	0.8396	0.3629	210.21	0.2944	15.5	1/982	2/7748
SNV	Breast	WWC3_R964H_8	HLA-A02:01	SLAELMAHT	0.9764	0.6573	0.2636	51.93	0.3073	15.38	1/982	1/7748
SNV	Breast	XPO4_A230V_5	HLA-C05:01	YLALVNQVL	0.9763	0.9835	0.702	46.06	0.1653	4.96	1/982	1/7748
SNV	Breast	ZNF451_F942L_9	HLA-C05:01	YLNRIGCFL	0.9632	0.9179	0.9846	494.59	0.4027	4.71	1/982	1/7748
SNV	Breast	ZNFX1_E1006G_4	HLA-A02:01	VIVGEAAEV	0.9689	0.5697	0.7411	169.3	0.4788	17.89	1/982	1/7748
SNV	Breast	ARMCX5_D313H_4	HLA-B18:01	KEFHKLVAL	0.9166	0.8141	0.0717	283.33	0.2222	6.56	1/982	1/7748
SNV	Breast	CAMK1_E145K_7	HLA-C07:01	HRDLKPKNL	0.9886	0.7742	0.2622	75.74	0.0775	2.8	1/982	1/7748
SNV	Breast	ENOPH1_I151M_2	HLA-A02:01	YMYSSGSVEA	0.9924	0.5221	0.6069	35.8	0.2692	78.1	1/982	1/7748
SNV	Breast	ENOPH1_I151M_9	HLA-B18:01	REAGMKVYM	0.9462	0.9615	0.4789	293.86	0.2247	78.1	1/982	1/7748
SNV	Breast	ING1_S251R_4	HLA-C05:01	QVDRHVELF	0.9998	0.9804	0.0781	47.03	0.1666	8.25	1/982	1/7748
SNV	Breast	PIK3CA_E1037K_7	HLA-B18:01	TEQEALKY	0.9992	0.8796	0.0525	64.14	0.1297	12.52	1/982	1/7748
SNV	Breast	PIK3CA_E1037K_7	HLA-B18:01	TEQEALKYF	0.9989	0.7903	0.0481	5.79	0.0398	12.52	1/982	1/7748
SNV	Breast	PRCP_A464V_1	HLA-A02:01	VLDPMSVLL	0.9923	0.5445	0.2609	1.37	0.0163	19.32	1/982	1/7748
SNV	Breast	PRCP_A464V_1	HLA-C05:01	VLDPMSVL	1	0.9624	0.0291	11.82	0.0985	19.32	1/982	1/7748
SNV	Breast	PRCP_A464V_1	HLA-C05:01	VLDPMSVLL	0.9999	0.946	0.0006	1.04	0.0016	19.32	1/982	1/7748
SNV	Breast	PRCP_A464V_1	HLA-C05:01	VLDPMSVLLA	0.9997	0.9712	1.4835	250.18	0.3159	19.32	1/982	1/7748
SNV	Breast	PRMT3_C424Y_4	HLA-C05:01	HIDYHTTSI	0.9999	0.8208	0.04	3.26	0.0421	7.08	1/982	1/7748
SNV	Breast	GAB1_R410Q_9	HLA-B15:01	SQDCYDIPQAF	0.9996	0.8217	1.2276	33.87	0.1804	30.31	1/982	1/7748
SNV	Breast	GLCCI1_I302V_2	HLA-A02:01	GVSPELEKV	0.9683	0.5217	0.6827	444.34	0.6494	25.38	1/982	1/7748
SNV	Breast	GLCCI1_I302V_5	HLA-C05:01	NVEGVSPEL	0.9999	0.8463	0.1741	489.1	0.4008	25.38	1/982	1/7748
SNV	Breast	PCDHGB6_R244K_3	HLA-C05:01	FSKDEYRISL	0.9994	0.8271	0.7161	163.63	0.2656	1.08	1/982	1/7748
SNV	Breast	UGGT2_W1141C_7	HLA-C03:03	KANPGACIL	0.9942	0.9917	0.0654	14.98	0.1119	16.35	1/982	1/7748
SNV	Breast	BEND3_V152L_2	HLA-A02:01	NLYELFEKA	0.9963	0.5408	0.288	12.25	0.1749	1.71	1/982	1/7748
SNV	Breast	C18orf21_S117I_2	HLA-A32:01	KIRSFVSTL	0.9708	0.8586	0.0329	33.76	0.084	8.57	1/982	1/7748
SNV	Breast	C18orf21_S117I_6	HLA-C07:02	KHHGKIRSF	0.6751	0.9234	0.0414	80.21	0.1731	8.57	1/982	1/7748
SNV	Breast	COA6_R101K_6	HLA-C07:02	KYFDKKRDY	0.5425	0.8243	0.2294	47.55	0.1283	13.51	1/982	1/7748
SNV	Breast	COA6_R101K_5	HLA-C07:02	YFDKKRDYL	0.7935	0.7694	0.2811	66.18	0.1573	13.51	1/982	1/7748
SNV	Breast	COG3_P60L_2	HLA-A02:01	LLIEDLCSL	0.9911	0.5151	0.0416	3.92	0.0807	13.58	1/982	1/7748
SNV	Breast	COG3_P60L_8	HLA-B51:01	LPVPAELL	0.9986	0.7017	0.05	77.34	0.2098	13.58	1/982	1/7748
SNV	Breast	COG3_P60L_8	HLA-B51:01	LPVPAELLI	0.9959	0.5911	0.0046	1.89	0.0084	13.58	1/982	1/7748
SNV	Breast	DNMT3A_K217T_2	HLA-A32:01	KTAKVIAGM	0.9789	0.799	0.1209	48.72	0.102	4.93	1/982	1/7748
SNV	Breast	DNMT3A_K217T_5	HLA-B51:01	EAEKTAKVI	0.733	0.5048	0.4795	365.39	0.3917	4.93	1/982	1/7748
SNV	Breast	NUP98_S1541L_9	HLA-A32:01	RALNYTHLL	0.9919	0.8767	0.0329	96.9	0.1418	24.53	1/982	1/7748
SNV	Breast	NUP98_S1541L_9	HLA-C07:02	RALNYTHLL	0.9918	0.9101	0.85	282.25	0.313	24.53	1/982	1/7748
SNV	Breast	PCDHB15_G5R_5	HLA-C07:02	RFPEQRQVL	0.8863	0.9809	0.2671	69.34	0.1611	1.85	3/982	3/7748
SNV	Breast	PCDHB15_G5R_5	HLA-C07:02	RFPEQRQVL	0.8863	0.9809	0.2671	69.34	0.1611	1.85	3/982	3/7748
SNV	Breast	PCDHB15_G5R_5	HLA-C07:02	RFPEQRQVL	0.8863	0.9809	0.2671	69.34	0.1611	1.85	3/982	3/7748
SNV	Breast	TNRC18_E1397Q_9	HLA-A02:01	LLSEIAELQL	0.998	0.6708	0.6957	206.92	0.5124	24.13	1/982	1/7748
SNV	Breast	ZNF394_R505H_2	HLA-C07:02	KHFNQSATL	0.8033	0.9509	0.122	267.84	0.3053	11.94	1/982	1/7748
SNV	Breast	HFE_P207L_7	HLA-A02:01	VLDQQVLPL	0.9907	0.7774	0.2758	25.33	0.2374	9.18	1/982	1/7748
SNV	Breast	HFE_P207L_7	HLA-A02:01	VLDQQVLPLV	0.9938	0.7057	0.4466	482.51	0.6676	9.18	1/982	1/7748
SNV	Breast	HFE_P207L_4	HLA-B13:02	QQVLPLVKV	0.8457	0.9136	0.0848	271.6	0.0991	9.18	1/982	1/7748
SNV	Breast	VWDE_D1005Y_7	HLA-B13:02	QQFDTMYLV	0.9187	0.7279	0.0338	17.36	0.0098	1.08	1/982	1/7748
SNV	Breast	GRIK1_A749T_6	HLA-C16:01	LTTDYTLLM	0.7828	0.9648	0.1909	313.49	0.7061	1.77	1/982	1/7748
SNV	Breast	LRP5_D748Y_3	HLA-A02:01	RLYGQFRQV	0.9965	0.6116	0.1381	4.75	0.1006	36.61	1/982	1/7748
SNV	Breast	MEOX2_G265E_7	HLA-C16:01	LVNVKKETL	0.7513	0.9833	0.8925	141.12	0.4963	35.03	1/982	1/7748
SNV	Breast	MMAB_S126L_7	HLA-A02:01	TLQDVGLAL	0.9789	0.7037	0.4301	10.17	0.16	8.1	1/982	1/7748
SNV	Breast	MMAB_S126L_7	HLA-C16:01	TLQDVGLAL	0.8424	0.9831	0.4985	100.32	0.4259	8.1	1/982	1/7748
SNV	Breast	NCOA6_L125I_8	HLA-A02:01	QLRDLGIISV	0.9258	0.6626	0.6406	423.79	0.639	13.12	1/982	1/7748
SNV	Breast	NOC4L_L149F_7	HLA-A02:01	YLFPREFFKL	0.9958	0.6257	0.2976	8.96	0.1499	14.48	1/982	1/7748
SNV	Breast	PLIN1_V255E_8	HLA-A02:01	AMWIPGVEPL	0.9661	0.5265	0.8791	161.84	0.4711	764.29	1/982	1/7748
SNV	Breast	PLIN1_V255E_2	HLA-B44:02	VEPLSSLAQW	0.996	0.5556	0.1185	13.82	0.1285	764.29	1/982	1/7748
SNV	Breast	RCOR2_V55L_9	HLA-C16:01	RVGTNYQAL	0.8094	0.9846	1.0535	39.97	0.2577	1.13	1/982	1/7748
SNV	Breast	ENOX1_E265G_6	HLA-C04:01	HYSEHGAAL	0.7605	0.8067	0.0651	405.19	0.1393	1.66	1/982	1/7748
SNV	Breast	GATA3_K119M_10	HLA-B35:01	SPWNLSPFSM	0.9877	0.855	0.3846	466.85	0.4804	117.22	1/982	1/7748
SNV	Breast	ITGA8_R748H_7	HLA-B27:05	LRFAVPHLEK	0.9999	0.9362	0.1641	20.14	0.2483	3.37	1/982	1/7748
SNV	Breast	ITGA8_R748H_3	HLA-B35:01	VPHLEKTNM	0.952	0.898	0.318	181.78	0.3686	3.37	1/982	1/7748
SNV	Breast	RAPGEF6_E23K_3	HLA-B35:01	TPKDLNTIY	0.9908	0.8667	0.0421	2.1	0.0395	2.46	1/982	1/7748
SNV	Breast	RAPGEF6_E23K_3	HLA-B35:01	TPKDLNTIYSY	0.9934	0.7682	0.3565	141.27	0.3428	2.46	1/982	1/7748
SNV	Breast	ARMCX2_M157V_10	HLA-A02:01	ALGAAEAPAV	0.9709	0.775	0.8958	220.87	0.523	30.82	1/982	1/7748
SNV	Breast	CCP110_R812S_1	HLA-B39:06	SRLMQTDKL	0.9942	0.7122	0.9776	335.62	0.3111	13.04	1/982	1/7748
SNV	Breast	CCP110_R812S_6	HLA-C12:03	KGFLTSRLM	0.6579	0.9834	1.7745	336.62	0.9195	13.04	1/982	1/7748
SNV	Breast	CLIP1_M728T_5	HLA-A02:01	HLVETEDTL	0.9199	0.7735	0.8511	125.74	0.4279	36.27	1/982	1/7748
SNV	Breast	CLIP1_M728T_6	HLA-B39:06	QHLVETEDTL	0.9777	0.7806	0.3321	93.88	0.1886	36.27	1/982	1/7748
SNV	Breast	CPT1A_A94V_6	HLA-C12:03	RTLETVNCM	0.6256	0.9735	0.6408	136.47	0.6063	34.31	1/982	1/7748
SNV	Breast	HECW2_A881T_8	HLA-B35:03	RPEENTNTI	0.643	0.9304	0.3626	76.13	0.0917	10.78	1/982	1/7748
SNV	Breast	NAV2_N688S_2	HLA-C12:03	YSHPNTATV	0.9994	0.969	0.0003	1.68	0.0073	4.29	1/982	1/7748
SNV	Breast	SLAMF7_V242A_3	HLA-A24:02	LFALGLFLW	0.9842	0.7427	0.2082	71.52	0.4058	1.33	1/982	1/7748
SNV	Breast	SLAMF7_V242A_4	HLA-A02:01	SLFALGLFL	0.9592	0.7281	0.0623	6.45	0.1228	1.33	1/982	1/7748
SNV	Breast	SLAMF7_V242A_4	HLA-C12:03	SLFALGLFL	0.6689	0.9975	1.2511	492.2	1.0685	1.33	1/982	1/7748
SNV	Breast	SYNE1_T441M_8	HLA-B39:06	VHEETANMI	0.9511	0.9119	0.4794	48.91	0.143	1.76	1/982	1/7748
SNV	Breast	SYNE1_T441M_9	HLA-C12:03	QVHEETANM	0.9294	0.9803	0.4559	159.81	0.6563	1.76	1/982	1/7748
SNV	Breast	SYNE1_T441M_4	HLA-C12:03	TANMIQRKL	0.8124	0.9901	0.4612	142.49	0.6199	1.76	1/982	1/7748
SNV	Breast	TMCO6_S443R_2	HLA-B39:06	QRLELLHLL	0.9993	0.7301	0.0979	9.37	0.0614	7.73	1/982	1/7748
SNV	Breast	ZNF341_T298M_8	HLA-C12:03	ATFDSPAM	0.9898	0.9726	1.2835	416.52	0.9998	3.25	1/982	1/7748
SNV	Breast	ZNF341_T298M_9	HLA-C12:03	VATFDSPAM	0.7531	0.9536	0.2999	306.64	0.8858	3.25	1/982	1/7748
SNV	Breast	ZNF341_T298M_8	HLA-C12:03	ATFDSPAML	0.9702	0.9619	0.0711	3.79	0.0383	3.25	1/982	1/7748
SNV	Breast	ADCK1_S483C_1	HLA-A24:02	CFSEAFNLW	0.9948	0.6537	0.1211	26.53	0.2986	1.66	1/982	1/7748
SNV	Breast	ADCK1_S483C_2	HLA-A24:02	ICFSEAFNLW	0.9794	0.5291	1.9389	14.37	0.2462	1.66	1/982	1/7748
SNV	Breast	ADCY7_I603M_8	HLA-A24:02	DFACASLMF	0.9671	0.5276	0.7796	371.13	0.6447	2.05	1/982	1/7748
SNV	Breast	AKAP9_S2609L_7	HLA-A02:01	ALTLRILEL	0.9745	0.5326	0.861	355.23	0.6	14.25	1/982	1/7748
SNV	Breast	AKAP9_S2609L_3	HLA-A02:01	RILELESQV	0.9947	0.7795	0.3601	107.76	0.4015	14.25	1/982	1/7748
SNV	Breast	AP3S1_G156E_4	HLA-A02:01	GLAEAPARA	0.9925	0.8481	0.7225	12.12	0.174	20.99	1/982	1/7748
SNV	Breast	AP3S1_G156E_4	HLA-A02:01	GLAEAPARAV	0.9932	0.9028	0.9551	14.69	0.1909	20.99	1/982	1/7748
SNV	Breast	ASPM_S2361F_9	HLA-C07:02	RYQALKQAF	0.6584	0.9338	0.0926	48.85	0.1307	18.66	1/982	1/7748
SNV	Breast	ASPM_S2361F_10	HLA-C07:02	MRYQALKQAF	0.9951	0.9401	0.0343	144.69	0.2334	18.66	1/982	1/7748
SNV	Breast	ATAD5_L1829V_10	HLA-A02:01	FLHYFEGIHV	0.9958	0.6521	0.1989	63.44	0.333	2.63	1/982	1/7748
SNV	Breast	BRWD3_D591H_10	HLA-A02:01	HLMPPPFLVHV	0.9995	0.6939	0.5779	10.93	0.1658	2.69	1/982	1/7748
SNV	Breast	CD151_F215L_2	HLA-A02:01	TLIQEHLRV	0.9941	0.6542	0.4654	13.35	0.1825	144.38	1/982	1/7748
SNV	Breast	COL10A1_R24Q_6	HLA-C07:02	VFYAEQYQM	0.7103	0.9708	0.7933	44.37	0.1228	114.23	1/982	1/7748
SNV	Breast	DENND5B_E1132Q_7	HLA-A02:01	GLVAALQQV	0.9919	0.8045	0.1243	2.36	0.053	4.91	1/982	1/7748
SNV	Breast	DTWD1_S249F_1	HLA-C07:02	FTIEAIYYF	0.9682	0.9479	1.8406	168.59	0.2498	4.2	1/982	1/7748
SNV	Breast	FARSA_D130H_7	HLA-C07:02	RVFRVVHSM	0.9915	0.9296	1.1367	291.42	0.3178	18.7	1/982	1/7748
SNV	Breast	FOXA1_I176M_9	HLA-C07:02	HAKPPYSYM	0.8745	0.9484	0.8045	496.13	0.3963	34.81	1/982	1/7748
SNV	Breast	HCN3_E604K_4	HLA-A02:01	VLWKPLVHA	0.9841	0.6529	0.1777	9.46	0.1542	1.01	1/982	2/7748
SNV	Breast	LUZP1_D710N_8	HLA-A02:01	SLFENDKNA	0.8558	0.8095	1.0068	464.2	0.6591	13.21	1/982	1/7748
SNV	Breast	MAST4_S209L_8	HLA-A02:01	ALGQSAPLL	0.9697	0.6391	0.5089	180.53	0.4898	13.18	1/982	1/7748
SNV	Breast	MAST4_S209L_4	HLA-C01:02	SAPLLTASL	0.8801	0.9689	0.0031	345.47	0.0342	13.18	1/982	1/7748
SNV	Breast	MBOAT2_L436V_3	HLA-A02:01	VLVSIKPSL	0.9379	0.722	0.288	41.41	0.2834	5.55	1/982	1/7748
SNV	Breast	MBTPS2_S474C_1	HLA-A02:01	CFLDATLTSV	0.9784	0.8417	1.0606	362.02	0.6042	6.33	1/982	1/7748
SNV	Breast	MRVI1_L643V_9	HLA-A02:01	VMMQYVENV	0.9975	0.6069	0.0296	1.67	0.0342	8.15	1/982	1/7748
SNV	Breast	MYO6_A585P_6	HLA-C07:02	RHFAGPVCY	0.7658	0.9588	0.2126	292.75	0.3184	23.36	1/982	1/7748
SNV	Breast	NBEAL1_R1154T_3	HLA-A02:01	RLTEIIFKI	0.9982	0.5582	0.0279	1.75	0.0371	4.13	1/982	1/7748
SNV	Breast	NBEAL1_R1154T_7	HLA-C07:02	KYSDRLTEI	0.7928	0.8413	0.3508	100.8	0.195	4.13	1/982	1/7748
SNV	Breast	OFD1_R654G_6	HLA-C07:02	FRSYHGRVI	0.7791	0.7909	0.512	55.26	0.1418	11.54	1/982	1/7748
SNV	Breast	PABPN1_E142K_8	HLA-A02:01	KLKELQNKV	0.9894	0.7307	0.6596	213.19	0.5173	20.27	1/982	1/7748
SNV	Breast	PEG3_S1313Y_1	HLA-C07:02	YSYTHTSFL	0.969	0.955	1.51	44.22	0.1226	4	1/982	1/7748
SNV	Breast	PEG3_S1313Y_1	HLA-C01:02	YSYTHTSFL	0.6375	0.962	0.053	94.44	0.009	4	1/982	1/7748
SNV	Breast	PHC2_V204L_9	HLA-B07:02	TPTATVATL	0.9966	0.5021	0.0109	2.2	0.0366	26.84	1/982	1/7748
SNV	Breast	PRKD2_N409I_5	HLA-C07:02	VHYSIKDTL	0.5275	0.8742	0.6388	260.68	0.3013	11.44	1/982	1/7748
SNV	Breast	RAD50_D368H_3	HLA-C07:02	ARHSLIQSL	0.9299	0.9528	0.0059	9.61	0.0467	16.37	1/982	1/7748
SNV	Breast	RALGAPB_E27K_7	HLA-A02:01	VLHSYPKSV	0.9541	0.7989	0.3101	97.31	0.388	13.01	1/982	1/7748
SNV	Breast	RHOT1_E39Q_7	HLA-B07:02	VPPRAEQITI	0.7856	0.5924	0.5114	126.72	0.2828	22.16	1/982	1/7748
SNV	Breast	RNF157_S461F_1	HLA-C07:02	FQRPSVQHL	0.8903	0.9702	0.0466	441.46	0.379	12.53	1/982	1/7748
SNV	Breast	SCN8A_M1328I_7	HLA-A02:01	GAIPSIINV	0.9301	0.5039	0.9749	127.94	0.4309	1.54	1/982	1/7748
SNV	Breast	SCN8A_M1328I_10	HLA-A02:01	ALVGAIPSII	0.9837	0.5207	0.7225	67.31	0.3406	1.54	1/982	1/7748
SNV	Breast	SDAD1_F335L_2	HLA-C07:02	NLYPFLQRF	0.8165	0.9304	1.073	66.84	0.1581	14.23	1/982	1/7748
SNV	Breast	TBC1D10A_R53H_1	HLA-C07:02	HRIDKFGFI	0.9732	0.8817	0.1356	36.03	0.1093	3.76	1/982	1/7748
SNV	Breast	TPCN1_E126K_4	HLA-A02:01	SLCKAPAVPAL	0.9201	0.5093	1.023	375.9	0.6125	17.36	1/982	1/7748
SNV	Breast	ULBP3_Q100H_7	HLA-A02:01	MLREVGHRL	0.8732	0.5638	0.5524	164.14	0.4735	1.13	1/982	1/7748
SNV	Breast	UPP1_C258W_7	HLA-A02:01	SVFAAMWSA	0.8926	0.6006	0.1588	228.74	0.5287	2.33	1/982	1/7748
SNV	Breast	ACER3_D19Y_10	HLA-A24:02	YWGPTTSTLYW	0.9972	0.6492	0.4816	43.55	0.3513	6.91	1/982	1/7748
SNV	Breast	ALDH3B2_N288K_5	HLA-C03:03	YAFSKSSQV	0.9986	0.9768	0.0031	2.43	0.0254	5.49	1/982	1/7748
SNV	Breast	BTN3A3_S244T_1	HLA-B35:02	TAQPWIAAL	0.9664	0.991	0.2154	381.7	0.1652	21.61	1/982	1/7748
SNV	Breast	BTN3A3_S244T_1	HLA-C03:03	TAQPWIAAL	0.9998	0.9965	0.0064	2.14	0.0191	21.61	1/982	1/7748
SNV	Breast	COL6A2_D1012N_7	HLA-B15:01	AQPGFFNRF	0.9981	0.9703	0.3304	27.26	0.1637	117.54	1/982	1/7748
SNV	Breast	DAAM2_L1011M_3	HLA-B15:01	KVMAAGSSL	0.9903	0.9508	0.257	189.43	0.3642	6.63	1/982	1/7748
SNV	Breast	DAAM2_L1011M_3	HLA-C03:03	KVMAAGSSL	0.9893	0.9904	0.1654	4.42	0.044	6.63	1/982	1/7748
SNV	Breast	DNAJC10_P418L_7	HLA-A02:01	NLYVFQLSL	0.8632	0.6629	0.6574	87.63	0.3745	8.77	1/982	1/7748
SNV	Breast	DNAJC10_P418L_5	HLA-A02:01	YVFQLSLAV	0.9616	0.5369	0.0442	38.53	0.2764	8.77	1/982	1/7748
SNV	Breast	DNAJC10_P418L_5	HLA-C03:03	YVFQLSLAV	0.9231	0.9886	0.0907	23.12	0.1502	8.77	1/982	1/7748
SNV	Breast	DSE_S80Y_3	HLA-A02:01	MLYSPLEYL	0.9973	0.6254	0.0464	1.76	0.0375	4.49	1/982	1/7748
SNV	Breast	DSE_S80Y_4	HLA-A02:01	TMLYSPLEYL	0.9706	0.5434	0.8054	220.33	0.5226	4.49	1/982	1/7748
SNV	Breast	DSE_S80Y_3	HLA-B15:01	MLYSPLEY	0.9998	0.91	1.3124	171.81	0.3515	4.49	1/982	1/7748
SNV	Breast	DSE_S80Y_4	HLA-B15:01	TMLYSPLEY	0.992	0.8933	0.1151	49.4	0.2166	4.49	1/982	1/7748
SNV	Breast	DSE_S80Y_3	HLA-C03:03	MLYSPLEYL	0.9834	0.9929	0.7232	125.53	0.2981	4.49	1/982	1/7748
SNV	Breast	EDAR_P349L_8	HLA-B15:01	GLSPTELLF	0.989	0.8411	0.1845	201.54	0.3723	1.46	1/982	1/7748
SNV	Breast	GPR84_A329P_2	HLA-B35:02	FPLSYIPFL	0.996	0.8317	0.0214	9.18	0.032	2.53	1/982	1/7748
SNV	Breast	HMCN1_C5117F_1	HLA-C03:03	FSHSCHNAM	0.9979	0.9872	0.0035	253.38	0.3937	1.37	1/982	1/7748
SNV	Breast	HMCN1_V94L_7	HLA-B35:02	DPEIGPLTI	0.7129	0.9697	0.1285	236.24	0.1382	1.37	1/982	1/7748
SNV	Breast	LMNB1_E262D_5	HLA-B15:01	RLYKDELEQTY	0.9999	0.9526	0.3244	223.73	0.386	68.33	1/982	1/7748
SNV	Breast	MARK2_V106L_2	HLA-A02:01	KLLNHPNIV	0.9947	0.7495	0.4015	8.86	0.1489	26.6	1/982	1/7748
SNV	Breast	MARK2_V106L_2	HLA-A02:01	KLLNHPNIVKL	0.9987	0.7165	0.702	279.75	0.5613	26.6	1/982	1/7748
SNV	Breast	MSS51_T382I_4	HLA-B15:01	KIPILITVY	0.9983	0.7166	0.4629	76.27	0.2615	2.27	1/982	1/7748
SNV	Breast	OBSCN_P7055Q_4	HLA-B15:01	AVAQCPPGSF	0.9995	0.9701	0.4906	450.86	0.5009	1.7	1/982	1/7748
SNV	Breast	PRRG1_H125P_6	HLA-B35:02	IPFPQPLNI	0.99	0.9503	0.0139	8.16	0.0304	4.97	1/982	1/7748
SNV	Breast	PRRG1_H125P_6	HLA-C03:03	IPFPQPLNI	0.9187	0.9892	0.7165	105.23	0.2798	4.97	1/982	1/7748
SNV	Breast	SERTAD3_A166V_1	HLA-B35:02	VPPEPPHNL	0.7677	0.9494	0.0375	71.23	0.0884	24.65	1/982	1/7748
SNV	Breast	SPIRE1_I638V_8	HLA-B35:02	KPYSTLPVF	0.7865	0.95	0.2056	243.83	0.1401	3.51	1/982	1/7748
SNV	Breast	SPIRE1_I638V_6	HLA-C03:03	YSTLPVFSL	0.9997	0.9954	0.0559	27.93	0.1615	3.51	1/982	1/7748
SNV	Breast	SPPL3_G31D_3	HLA-C04:01	VYDSFRSL	0.9999	0.6721	0.0273	190.17	0.0981	30.37	1/982	1/7748
SNV	Breast	SPPL3_G31D_3	HLA-C04:01	VYDSFRSLNM	0.9996	0.647	0.0744	101.69	0.0744	30.37	1/982	1/7748
SNV	Breast	SPPL3_G31D_4	HLA-C03:03	IVYDSFRSL	0.9986	0.9811	0.0301	2.23	0.021	30.37	1/982	1/7748
SNV	Breast	UBE3C_P694L_2	HLA-A02:01	VLFEERVKI	0.9891	0.5216	0.3137	4.02	0.0844	21.34	1/982	1/7748
SNV	Breast	UBE3C_P694L_1	HLA-C04:01	LFEERVKIF	0.9058	0.5433	0.0954	284.61	0.1176	21.34	1/982	1/7748
SNV	Breast	ZFP28_Q656E_5	HLA-C03:03	KAFTEKAHL	0.9972	0.9877	0.0794	121.49	0.2947	4.88	1/982	1/7748
SNV	Breast	ZNF778_L172F_2	HLA-A24:02	VFGQCGKAF	0.972	0.6538	0.2319	150.95	0.5103	3.66	1/982	1/7748
SNV	Breast	ZNF778_L172F_9	HLA-B15:01	KIGEQFSVF	0.999	0.966	0.1451	18.04	0.1335	3.66	1/982	1/7748
SNV	Breast	ZNF778_L172F_3	HLA-B15:01	SVFGQCGKAF	0.9994	0.9168	0.3336	81.83	0.268	3.66	1/982	1/7748
SNV	Breast	LUM_R235H_3	HLA-C03:03	YLHLSHNEL	0.9751	0.996	0.2825	41.56	0.1877	295.82	1/982	1/7748
SNV	Breast	POGK_R519P_3	HLA-B57:01	SVPAQYSNW	0.9707	0.8685	0.387	23.15	0.1716	16.32	1/982	1/7748
SNV	Breast	POGK_R519P_4	HLA-B57:01	DSVPAQYSNW	0.998	0.8187	0.5138	186.62	0.3556	16.32	1/982	1/7748
SNV	Breast	TOB1_S100Y_10	HLA-B15:01	SVWIDPFEVY	0.9989	0.9436	1.12	20.61	0.1433	87.26	1/982	1/7748
SNV	Breast	ATF7IP_G1236S_6	HLA-B15:01	TQFVSSSKY	0.9998	0.7755	0.0154	2.3	0.0183	13.81	1/982	1/7748
SNV	Breast	ATF7IP_G1236S_6	HLA-B15:01	TQFVSSSKYY	0.9995	0.7522	0.251	36.32	0.1865	13.81	1/982	1/7748
SNV	Breast	GIT1_Q112H_5	HLA-B15:01	RAKYHMLAF	0.9885	0.9107	0.107	42.55	0.2004	21.25	1/982	1/7748
SNV	Breast	LAMA2_A708V_7	HLA-B15:01	SVNLESVVSY	0.9994	0.8823	0.5909	72.13	0.2564	12.04	1/982	1/7748
SNV	Breast	RAF1_I122V_3	HLA-A02:01	SLVGEELQV	0.9961	0.7974	0.3157	3.09	0.068	23.53	1/982	1/7748
SNV	Breast	RAF1_I122V_5	HLA-C03:03	AASLVGEEL	0.9993	0.995	0.099	75.58	0.2453	23.53	1/982	1/7748
SNV	Breast	AFF1_R625M_9	HLA-B27:05	SRTSLQGEM	0.9993	0.8381	0.2829	466.95	0.5924	18.72	1/982	1/7748
SNV	Breast	C1orf61_S24R_2	HLA-B27:05	SRFSPGAGGF	1	0.6506	0.0171	1.28	0.0208	1.03	1/982	1/7748
SNV	Breast	C1orf61_S24R_2	HLA-B27:05	SRFSPGAGGFC	0.9999	0.5626	0.4901	221.08	0.4957	1.03	1/982	1/7748
SNV	Breast	CCT2_L416F_1	HLA-C03:04	FMAHAVTQL	0.999	0.9941	0.0195	9.74	0.0806	222.54	1/982	1/7748
SNV	Breast	CCT2_L416F_1	HLA-C01:02	FMAHAVTQL	0.9913	0.9661	0.0684	343.32	0.034	222.54	1/982	1/7748
SNV	Breast	COLEC12_T359M_8	HLA-C03:04	YTAHHLRML	0.9988	0.9464	0.0536	137.75	0.3102	3.07	1/982	1/7748
SNV	Breast	DIRC2_Q152E_8	HLA-B27:05	RRLIHGGEM	0.9998	0.7842	0.199	17.03	0.2357	27.03	1/982	1/7748
SNV	Breast	DIRC2_Q152E_8	HLA-B27:05	RRLIHGGEML	0.9999	0.8823	0.1055	13.32	0.2174	27.03	1/982	1/7748
SNV	Breast	GPRASP2_H737Y_6	HLA-B27:05	ARTKFYVLK	0.9993	0.9324	0.1824	10	0.1951	5.33	1/982	1/7748
SNV	Breast	GPRASP2_H737Y_6	HLA-B27:05	ARTKFYVLKM	0.9999	0.9006	0.0855	155.01	0.4562	5.33	1/982	1/7748
SNV	Breast	MAGT1_S108R_2	HLA-B27:05	SRAFTNRIF	0.9982	0.8365	0.5577	31.22	0.2862	154.19	1/982	1/7748
SNV	Breast	MAGT1_S108R_5	HLA-B27:05	WRYSRAFTNR	0.9999	0.8296	0.5683	369.34	0.5618	154.19	1/982	1/7748
SNV	Breast	MAGT1_S108R_2	HLA-B27:05	SRAFTNRIFF	1	0.8216	0.501	7.26	0.1686	154.19	1/982	1/7748
SNV	Breast	MAGT1_S108R_1	HLA-C03:04	RAFTNRIFF	0.8376	0.9908	0.5709	40.39	0.1856	154.19	1/982	1/7748
SNV	Breast	NCOR2_A694T_4	HLA-B40:01	SEETAFPPV	0.9659	0.5533	0.1464	129.65	0.4863	53.68	1/982	1/7748
SNV	Breast	NCOR2_A694T_3	HLA-B40:01	EETAFPPVV	0.9791	0.6358	0.1508	104.74	0.4636	53.68	1/982	1/7748
SNV	Breast	NCOR2_A694T_7	HLA-C03:04	AAASEETAF	0.9904	0.9924	0.276	298.25	0.419	53.68	1/982	1/7748
SNV	Breast	RPN1_D546H_1	HLA-B27:05	HRVSEMQKL	0.9999	0.9181	0.1389	4.72	0.1376	639.15	1/982	1/7748
SNV	Breast	SIDT2_S605R_9	HLA-B27:05	KRHPDINAR	0.9986	0.8602	0.199	13.68	0.2194	16.62	1/982	1/7748
SNV	Breast	SIDT2_S605R_9	HLA-B27:05	KRHPDINARAY	1	0.9224	0.0297	77.32	0.3798	16.62	1/982	1/7748
SNV	Breast	SIDT2_S605R_1	HLA-C03:04	RAYSAYACL	0.9723	0.977	0.3596	29.14	0.1641	16.62	1/982	1/7748
SNV	Breast	STAT5B_V498L_7	HLA-B27:05	GRVPFALPDK	0.9997	0.6457	0.2829	34.8	0.2957	24.87	1/982	1/7748
SNV	Breast	CLPTM1L_D480N_5	HLA-A32:01	TFIDNVFAF	0.9317	0.9101	0.4808	455.7	0.2759	37.61	1/982	1/7748
SNV	Breast	CLPTM1L_D480N_1	HLA-A32:01	NVFAFIITM	0.756	0.8883	0.1118	180.71	0.1923	37.61	1/982	1/7748
SNV	Breast	CLPTM1L_D480N_5	HLA-C07:02	TFIDNVFAF	0.8793	0.901	0.0343	5.36	0.0209	37.61	1/982	1/7748
SNV	Breast	CTNNA1_S558L_9	HLA-C07:02	ARVIHVVTL	0.9848	0.8151	0.0181	7.4	0.0351	123.47	1/982	1/7748
SNV	Breast	CYP2S1_T306M_9	HLA-A02:01	YLLFAGTMM	0.9253	0.6505	0.4121	185.25	0.4942	2.69	1/982	1/7748
SNV	Breast	CYP2S1_T306M_8	HLA-A02:01	LLFAGTMMV	0.9943	0.6869	0.007	1.72	0.0363	2.69	1/982	1/7748
SNV	Breast	CYP2S1_T306M_9	HLA-A02:01	YLLFAGTMMV	0.9965	0.7019	0.1535	5.72	0.114	2.69	1/982	1/7748
SNV	Breast	CYP2S1_T306M_2	HLA-A32:01	MMVSTTVGY	0.5576	0.9412	0.2135	432.37	0.2705	2.69	1/982	1/7748
SNV	Breast	DAB2IP_R515Q_8	HLA-C07:02	GRPDISEQL	0.874	0.9525	0.1575	106.01	0.1999	11.49	1/982	1/7748
SNV	Breast	DAPK1_L1392M_8	HLA-C07:02	RRDAADFML	0.8955	0.9631	0.3459	423.71	0.373	3.38	1/982	1/7748
SNV	Breast	ERN1_N244S_6	HLA-A32:01	KVMHISVAV	0.965	0.9547	0.0273	7.93	0.0337	4.38	1/982	1/7748
SNV	Breast	FAM155A_L431V_7	HLA-A02:01	ILLHTVVTA	0.9885	0.6201	0.1425	23.26	0.2302	1.27	1/982	1/7748
SNV	Breast	FLNA_S2152L_5	HLA-C07:02	RRAPLVANV	0.9227	0.9834	0.1834	52.59	0.1373	119.44	1/982	1/7748
SNV	Breast	GLT8D2_R5Q_6	HLA-A32:01	KINQVLLFL	0.98	0.8902	0.0431	251.13	0.22	11	1/982	1/7748
SNV	Breast	GPR143_T218S_8	HLA-A02:01	ILFQKTVSA	0.9867	0.7137	0.1535	3.99	0.0834	3.34	1/982	1/7748
SNV	Breast	GPR143_T218S_8	HLA-A02:01	ILFQKTVSAV	0.9954	0.6916	0.2146	204.33	0.5104	3.34	1/982	1/7748
SNV	Breast	GPR143_T218S_4	HLA-A32:01	KTVSAVASL	0.9865	0.9574	0.0261	15.88	0.0519	3.34	1/982	1/7748
SNV	Breast	IFIH1_M853I_1	HLA-A02:01	IMYKAIHCV	0.993	0.5151	0.0516	17.16	0.2044	23.44	1/982	1/7748
SNV	Breast	IGLV3-19_R79L_8	HLA-B07:02	RPSGIPDL	0.9986	0.5547	0.5006	68.09	0.232	1643.09	1/982	1/7748
SNV	Breast	IGLV3-19_R79L_8	HLA-B07:02	RPSGIPDLF	0.9966	0.5036	0.1735	23.44	0.1638	1643.09	1/982	1/7748
SNV	Breast	IGLV3-19_R79L_9	HLA-C07:02	NRPSGIPDL	0.7594	0.9143	0.2575	253.25	0.2977	1643.09	1/982	1/7748
SNV	Breast	IRAK2_A148T_5	HLA-B07:02	SPARTHQPAF	0.9987	0.6488	0.1044	4.87	0.0729	2.68	1/982	1/7748
SNV	Breast	IRAK2_A148T_3	HLA-C07:02	ARTHQPAFL	0.8251	0.9362	0.1449	266.44	0.3045	2.68	1/982	1/7748
SNV	Breast	MON1A_S418F_9	HLA-C07:02	ARARSLVFF	0.8867	0.953	0.1325	71.58	0.1637	5.31	1/982	1/7748
SNV	Breast	NRBP1_E395Q_3	HLA-A02:01	FLQDVRNGI	0.9954	0.6808	0.1848	8.81	0.1485	32.99	1/982	1/7748
SNV	Breast	PLCG1_M479I_9	HLA-C07:02	AYEEVPTSI	0.8281	0.9791	0.1973	261.16	0.3016	14.5	1/982	1/7748
SNV	Breast	SHC1_S426C_7	HLA-A02:01	ELFDDPCYV	0.945	0.7741	0.1425	5.28	0.1082	45.45	1/982	1/7748
SNV	Breast	SMARCD3_E324G_4	HLA-C07:02	KFSGIPQRL	0.7442	0.9026	0.3336	96.05	0.1903	6.07	1/982	1/7748
SNV	Breast	SPARCL1_F140S_8	HLA-A02:01	KLSENTDSL	0.9858	0.7491	0.1509	8.25	0.143	84.17	1/982	1/7748
SNV	Breast	SPARCL1_F140S_1	HLA-A32:01	SLAPGVSSF	0.9712	0.9936	0.104	4.97	0.0259	84.17	1/982	1/7748
SNV	Breast	SPARCL1_F140S_1	HLA-C07:02	SLAPGVSSF	0.819	0.991	0.4417	134.89	0.2258	84.17	1/982	1/7748
SNV	Breast	STAG1_E995Q_2	HLA-A32:01	QQYPPPNLAF	0.9547	0.9903	0.946	355.1	0.2504	11.3	1/982	1/7748
SNV	Breast	TMEM187_S190W_9	HLA-C07:02	HRHYGSTTW	0.7668	0.9405	0.5371	138.52	0.2287	15.76	1/982	1/7748
SNV	Breast	TNN_G1002S_4	HLA-A32:01	QIHSYILTY	0.7914	0.7537	0.055	147.15	0.1766	2.34	1/982	1/7748
SNV	Breast	TNN_G1002S_2	HLA-A32:01	HSYILTYQF	0.9869	0.9424	0.0659	37.26	0.0909	2.34	1/982	1/7748
SNV	Breast	UBC_R454T_3	HLA-A32:01	RLTGGMQIF	0.9865	0.9605	0.2369	33.25	0.0828	445.92	1/982	1/7748
SNV	Breast	UBC_R454T_4	HLA-C07:02	LRLTGGMQI	0.8535	0.9726	0.3336	92.96	0.1871	445.92	1/982	1/7748
SNV	Breast	ZFHX4_E1024K_4	HLA-C07:02	HRHKAALKL	0.8058	0.9028	0.0187	13.2	0.0598	2.23	1/982	1/7748
SNV	Breast	ZZEF1_A1673G_5	HLA-A02:01	SLLPGLSCV	0.994	0.7942	0.0669	3.4	0.0733	1.56	1/982	1/7748
SNV	Breast	ATP2C2_T396M_2	HLA-A02:01	VMSDGLRAEV	0.9854	0.572	0.6406	26.19	0.2402	2.9	1/982	1/7748
SNV	Breast	ATP2C2_T396M_1	HLA-C05:01	MSDGLRAEV	1	0.9889	0.0133	14.52	0.1083	2.9	1/982	1/7748
SNV	Breast	BCL2L12_A283G_6	HLA-C07:02	ARLALGMEL	0.8827	0.9766	0.1019	18	0.073	5.8	1/982	1/7748
SNV	Breast	CANX_D92H_1	HLA-C05:01	HTDDEIAKY	0.9854	0.8268	0.294	262.26	0.3218	357.04	1/982	1/7748
SNV	Breast	CDK16_M441I_1	HLA-C07:02	IKHPFFLSL	0.923	0.9211	0.0379	78.51	0.1713	46.22	1/982	1/7748
SNV	Breast	CPT2_L178F_9	HLA-C05:01	LLEPEVFHF	0.9975	0.9716	0.2409	67.14	0.1902	8.38	1/982	1/7748
SNV	Breast	CPXM1_Y467H_8	HLA-C07:02	HHLPLPTHY	0.7204	0.9745	0.0365	88.01	0.1818	10.79	1/982	1/7748
SNV	Breast	CSRNP2_P444R_2	HLA-C07:02	FRKEKDLNV	0.5249	0.9654	0.3785	314.17	0.3289	7.13	1/982	1/7748
SNV	Breast	GIPR_A205G_6	HLA-A02:01	YLGDQGLAL	0.9936	0.7274	0.1151	1.93	0.0431	1.1	1/982	1/7748
SNV	Breast	GIPR_A205G_1	HLA-A02:01	GLALWNQAL	0.9244	0.7134	0.4576	77.75	0.3592	1.1	1/982	1/7748
SNV	Breast	GIPR_A205G_6	HLA-C05:01	YLGDQGLAL	0.9989	0.994	0.101	4.37	0.0504	1.1	1/982	1/7748
SNV	Breast	METAP1D_E298Q_4	HLA-A02:01	KVLQDAWTV	0.9697	0.7203	0.172	7.14	0.1309	1.83	1/982	1/7748
SNV	Breast	METAP1D_E298Q_3	HLA-A02:01	VLQDAWTVV	0.9918	0.7472	0.2478	46.97	0.2957	1.83	1/982	1/7748
SNV	Breast	METAP1D_E298Q_7	HLA-B44:02	PEFKVLQDAW	0.9789	0.6023	0.4869	311.91	0.3599	1.83	1/982	1/7748
SNV	Breast	MUC13_C360G_4	HLA-B07:02	SPFGVASSL	0.9993	0.641	0.0071	1.24	0.0106	1.09	1/982	1/7748
SNV	Breast	MYO10_R1688Q_2	HLA-C05:01	SQDEIEALI	0.9996	0.9502	0.0943	13.19	0.1038	36.28	1/982	1/7748
SNV	Breast	MYO7A_K1128N_8	HLA-A02:01	KLTEEVTNRL	0.9872	0.6821	1.4521	263.66	0.5517	1.67	1/982	1/7748
SNV	Breast	MYO7A_K1128N_7	HLA-C05:01	LTEEVTNRL	0.9999	0.9673	0.1501	11.72	0.0981	1.67	1/982	1/7748
SNV	Breast	NDUFB9_G7V_9	HLA-A02:01	FLASVPYLT	0.9914	0.5931	0.0731	9.03	0.1505	77.37	1/982	1/7748
SNV	Breast	NEO1_R1409W_3	HLA-C05:01	RSWPPMPVV	0.9644	0.9483	0.9846	153.81	0.2584	5.06	1/982	1/7748
SNV	Breast	NOTCH2_R1630H_7	HLA-A02:01	FLEIDNHQCV	0.9858	0.6165	0.9832	327.47	0.5868	48.31	1/982	1/7748
SNV	Breast	OPLAH_I755M_3	HLA-C07:02	GRMLQRTAI	0.9235	0.9588	0.5784	215.91	0.2789	13.2	1/982	1/7748
SNV	Breast	PARK2_R402P_9	HLA-B44:02	DERAAEQAPW	0.9884	0.5488	0.2135	23.67	0.1616	1.23	1/982	1/7748
SNV	Breast	PLXNA2_D1828N_5	HLA-C05:01	ISDQNMNAY	0.9806	0.9599	0.2896	122.29	0.2373	1.32	1/982	1/7748
SNV	Breast	PLXNA2_D1828N_5	HLA-C05:01	ISDQNMNAYL	0.9999	0.9446	0.0803	106.18	0.2258	1.32	1/982	1/7748
SNV	Breast	PPP2R5B_L336P_4	HLA-A02:01	VMFPGEMEEI	0.9789	0.5392	0.6242	39.47	0.2787	4.26	1/982	1/7748
SNV	Breast	PPP2R5B_L336P_4	HLA-A02:01	VMFPGEMEEIL	0.9733	0.5125	1.2221	121.19	0.4216	4.26	1/982	1/7748
SNV	Breast	R3HCC1L_A682T_8	HLA-C07:02	KWVDDTHTL	0.634	0.9104	0.2126	132.28	0.2237	5.45	1/982	1/7748
SNV	Breast	R3HCC1L_A682T_7	HLA-C05:01	WVDDTHTL	1	0.8735	0.0568	9.45	0.0857	5.45	1/982	1/7748
SNV	Breast	R3HCC1L_A682T_7	HLA-C05:01	WVDDTHTLGV	0.9998	0.9812	0.2016	94.96	0.2168	5.45	1/982	1/7748
SNV	Breast	SCCPDH_D86H_1	HLA-B44:02	HEMAKQATV	0.9488	0.5214	0.2241	267.21	0.3467	52.44	1/982	1/7748
SNV	Breast	SQRDL_E252V_8	HLA-A02:01	ALQEIIQV	0.998	0.7583	1.2099	237.47	0.5348	27.56	1/982	1/7748
SNV	Breast	SURF6_E127Q_8	HLA-A02:01	RLHEKIQQA	0.967	0.6619	0.3076	30.5	0.2536	9.89	1/982	1/7748
SNV	Breast	TDRD1_S285F_3	HLA-C07:02	LYFSEVLEY	0.6106	0.909	0.1256	34.02	0.1056	2.47	1/982	1/7748
SNV	Breast	TDRD1_S285F_2	HLA-C07:02	YFSEVLEYM	0.815	0.9509	0.2626	23.49	0.0844	2.47	1/982	1/7748
SNV	Breast	VPS13B_L2853V_1	HLA-C05:01	VPDPIIIHL	0.9983	0.7559	0.0897	6.04	0.0658	5.4	1/982	1/7748
SNV	Breast	VPS13B_L2853V_2	HLA-C05:01	HVPDPIIIHL	0.9955	0.7728	0.0943	16.78	0.1151	5.4	1/982	1/7748
SNV	Breast	ABCE1_P488A_6	HLA-B15:01	YLIDEASAY	0.9998	0.9482	0.0334	1.62	0.0076	17.85	1/982	1/7748
SNV	Breast	ABCE1_P488A_5	HLA-C03:03	LIDEASAYL	0.9958	0.9913	0.2585	133.7	0.3062	17.85	1/982	1/7748
SNV	Breast	AVPR2_R337Q_7	HLA-C03:03	SVSSELQSL	0.9995	0.9919	0.118	369.78	0.4538	9.46	1/982	1/7748
SNV	Breast	CPSF3_L540F_1	HLA-B50:01	FEIQEKPAL	0.8467	0.6406	0.0206	68.63	0.1668	24.86	1/982	1/7748
SNV	Breast	CPSF3_L540F_9	HLA-B15:01	KLTGDVEEF	0.9925	0.9743	0.3598	398.75	0.4799	24.86	1/982	1/7748
SNV	Breast	EXPH5_I1880V_5	HLA-C03:03	SAISVYRPI	0.9977	0.9577	0.1386	255.55	0.3949	3.03	1/982	1/7748
SNV	Breast	KCTD21_V127M_2	HLA-B15:01	TMREAPQIY	0.9994	0.8904	0.0537	1.46	0.006	110.3	1/982	1/7748
SNV	Breast	KCTD21_V127M_3	HLA-B15:01	FTMREAPQIY	0.9995	0.8905	0.9053	8.89	0.0854	110.3	1/982	1/7748
SNV	Breast	KCTD21_V127M_1	HLA-C06:02	MREAPQIYSL	0.9685	0.9877	0.7499	341.55	0.17	110.3	1/982	1/7748
SNV	Breast	KRT7_D171N_4	HLA-B15:01	SMQNVVEDF	0.994	0.8119	0.169	164.74	0.346	676.84	1/982	1/7748
SNV	Breast	PLXNB3_F75L_7	HLA-C03:03	GAVNRLLQL	0.9995	0.9862	0.1654	103.91	0.2785	7.4	1/982	1/7748
SNV	Breast	SLC5A7_V189D_5	HLA-A24:02	AYTDDVQLF	0.9988	0.5954	0.0421	1.16	0.0091	1.03	1/982	1/7748
SNV	Breast	SLC5A7_V189D_6	HLA-A24:02	VAYTDDVQLF	0.994	0.5638	1.3709	1.5	0.025	1.03	1/982	1/7748
SNV	Breast	SLC5A7_V189D_5	HLA-A24:02	AYTDDVQLFC	0.9924	0.6747	0.8366	176.26	0.5318	1.03	1/982	1/7748
SNV	Breast	SLC5A7_V189D_6	HLA-C03:03	VAYTDDVQL	0.9995	0.9913	0.129	5.56	0.0539	1.03	1/982	1/7748
SNV	Breast	SMG1_V2264F_9	HLA-B15:01	KIGPALKTF	0.9979	0.8368	0.2722	32.82	0.1776	5.08	1/982	1/7748
SNV	Breast	SNRK_A700P_5	HLA-B15:01	GQVPPVGGIKF	1	0.8924	0.2165	241.27	0.3958	7.4	1/982	1/7748
SNV	Breast	YEATS4_L163F_5	HLA-B15:01	RQLTFGAY	0.9991	0.8753	0.7887	120.24	0.3049	8.26	1/982	1/7748
SNV	Breast	ZNF768_L93I_2	HLA-B15:01	GIVPPSPEF	0.9962	0.9602	0.3244	39.82	0.1946	25.11	1/982	1/7748
SNV	Breast	ZNF768_L93I_2	HLA-C03:03	GIVPPSPEF	0.9316	0.9906	0.316	219.67	0.3742	25.11	1/982	1/7748
SNV	Breast	CDK5_V162L_5	HLA-C12:03	YSAELVTL	0.9998	0.9841	0.4146	238.34	0.7995	8.31	1/982	1/7748
SNV	Breast	NAV3_P27R_7	HLA-C12:03	HTALPIRNL	0.8035	0.9867	0.4241	33.86	0.3005	1.7	1/982	1/7748
SNV	Breast	TYK2_E437K_1	HLA-C12:03	KVAPPRLVM	0.9916	0.9795	0.1621	2.66	0.0231	12.25	1/982	1/7748
SNV	Breast	UTP15_V203I_9	HLA-C12:03	RTSESVLSI	0.9189	0.9664	0.2183	23.64	0.2348	7.37	1/982	1/7748
SNV	Breast	UTP15_V203I_3	HLA-C12:03	LSIEHGQPV	0.9923	0.8977	0.0415	42.69	0.3408	7.37	1/982	1/7748
SNV	Breast	ZNF577_G21V_5	HLA-C12:03	SSGEVSLSF	0.7425	0.9877	0.283	132.22	0.5968	3.83	1/982	1/7748
SNV	Breast	CDS1_I88V_1	HLA-C07:02	VRGILTLTM	0.9395	0.7526	0.1356	145.98	0.2343	29.02	1/982	1/7748
SNV	Breast	NEDD9_V323I_9	HLA-C12:03	DAYDVPRGI	0.6722	0.9789	1.023	345.52	0.9293	11.64	1/982	1/7748
SNV	Breast	PCDHB6_Q745K_1	HLA-C12:03	KSYQYKVCL	0.8221	0.9579	0.6735	196.82	0.7268	1.07	1/982	1/7748
SNV	Breast	PIK3CA_E542K_8	HLA-C12:03	STRDPLSKI	0.8371	0.8875	0.252	111.94	0.5523	10.92	4/982	13/7748
SNV	Breast	PRKDC_V2770I_8	HLA-B38:01	MKQDAQVIL	0.9959	0.9406	0.5136	291.84	0.1359	37.99	1/982	1/7748
SNV	Breast	TMEM53_E105Q_6	HLA-B38:01	YEIEKQPLL	0.9443	0.8969	0.1015	37.44	0.0379	7.58	1/982	1/7748
SNV	Breast	PDE9A_N376S_4	HLA-C07:01	VRYSDISPL	0.9854	0.6797	0.0313	213.31	0.1183	1.8	1/982	1/7748
SNV	Breast	PPP3CA_V34A_8	HLA-C07:01	HRLTAKEAF	0.998	0.8038	0.0645	293.26	0.1357	20.85	1/982	1/7748
SNV	Breast	VPS26A_I136T_8	HLA-C06:02	RYFLKVTTV	0.5699	0.996	0.4585	381.77	0.1806	37.13	1/982	1/7748
SNV	Breast	DNAH11_E2135Q_7	HLA-C07:02	RRKLHFQQM	0.952	0.9778	0.0301	84.96	0.1783	9.84	1/982	1/7748
SNV	Breast	DOCK10_S459F_6	HLA-C14:02	MLLGAFVAL	0.685	0.9855	0.2754	284.39	0.8368	5.99	1/982	1/7748
SNV	Breast	ENTPD4_S505L_7	HLA-C14:02	VFHRGFLF	0.9671	0.9757	0.3575	440.59	1.0198	15.43	1/982	1/7748
SNV	Breast	NBPF12_E40Q_6	HLA-C07:02	FRNLKQRCF	0.8245	0.9736	0.3259	105.19	0.1991	5.16	1/982	1/7748
SNV	Breast	PACRG_H107D_3	HLA-C07:02	YHDYLPLFF	0.8301	0.9248	0.1784	67.75	0.1592	1.7	1/982	1/7748
SNV	Breast	PACRG_H107D_3	HLA-C14:02	YHDYLPLFF	0.6129	0.9151	0.5557	23.31	0.2314	1.7	1/982	1/7748
SNV	Breast	PDCL3_D160H_1	HLA-C07:02	HRNLPTIFV	0.8127	0.8856	0.418	177.97	0.2562	17.02	1/982	1/7748
SNV	Breast	PDCL3_D160H_1	HLA-C07:02	HRNLPTIFVY	0.9906	0.893	0.3459	393.77	0.3622	17.02	1/982	1/7748
SNV	Breast	PPP6R1_E545K_5	HLA-C14:02	FNFPKEAVL	0.822	0.9688	0.4206	394.54	0.9714	10.09	1/982	1/7748
SNV	Breast	SKA3_P362R_7	HLA-C07:02	LRTPTPREV	0.8312	0.9765	0.2943	403.94	0.3659	2.15	1/982	1/7748
SNV	Breast	SLC39A13_P322R_2	HLA-C07:02	LRFTSGGFL	0.7852	0.9914	0.2575	174.98	0.2542	10.08	1/982	1/7748
SNV	Breast	SLC39A13_P322R_1	HLA-C07:02	RFTSGGFLY	0.5472	0.9914	1.1496	245.03	0.2938	10.08	1/982	1/7748
SNV	Breast	ZNF608_Q1483E_4	HLA-B51:01	DPFEGLTSA	0.9423	0.8004	0.3279	231.5	0.3272	10.93	1/982	1/7748
SNV	Breast	THOP1_P595L_10	HLA-B07:02	VPATPGTNML	0.9977	0.6066	0.1545	5.89	0.079	5.87	1/982	1/7748
SNV	Breast	ABHD13_N100S_8	HLA-B39:01	TKDGIRLSL	0.9983	0.8129	0.4015	4.91	0.0288	22.17	1/982	1/7748
SNV	Breast	DNM3_P819R_7	HLA-C07:02	FRPGPLRPF	0.8752	0.9796	0.0066	29.48	0.0969	5.84	1/982	1/7748
SNV	Breast	FAM168B_R181Q_2	HLA-C07:02	YQAPGTPTY	0.8587	0.954	0.0099	28.49	0.0951	74.4	1/982	1/7748
SNV	Breast	SERPINA1_G344R_2	HLA-B39:01	SRVTEEAPL	0.9971	0.8961	0.0851	82.21	0.1577	25.74	1/982	1/7748
SNV	Breast	VPS8_R871Q_1	HLA-B39:01	QHSERQQVL	0.9988	0.8141	0.0267	13.03	0.0635	21.86	1/982	1/7748
SNV	Breast	DYX1C1_T303M_5	HLA-A32:01	KLFAMENYL	0.9325	0.9268	0.0522	30.53	0.0778	6.15	1/982	1/7748
SNV	Breast	MGAT3_R293C_7	HLA-C14:02	IADDYLCTF	0.9934	0.9485	0.169	313.43	0.8767	1.75	1/982	1/7748
SNV	Breast	PGAP1_R447C_8	HLA-A03:01	VVYVPSVCGSK	0.9988	0.77	0.585	300.94	0.4206	5.94	1/982	1/7748
SNV	Breast	SEC24D_I337M_3	HLA-A32:01	AVMKPFATI	0.9923	0.9483	0.0623	5.55	0.0274	41.93	1/982	1/7748
SNV	Breast	SEC24D_I337M_9	HLA-B15:01	AQIPLAAVM	0.9994	0.9652	0.071	3.65	0.0359	41.93	1/982	1/7748
SNV	Breast	SEC24D_I337M_9	HLA-C14:02	AQIPLAAVM	0.7293	0.9907	0.8754	293.26	0.8494	41.93	1/982	1/7748
SNV	Breast	SEC24D_I337M_3	HLA-C14:02	AVMKPFATI	0.7323	0.9685	1.8416	168.32	0.6402	41.93	1/982	1/7748
SNV	Breast	TGS1_D786H_7	HLA-A32:01	RTMMSPHGF	0.9952	0.9739	0.0129	2.65	0.0108	22.55	1/982	1/7748
SNV	Breast	TGS1_D786H_5	HLA-A32:01	MMSPHGFEI	0.9584	0.9577	0.0809	113.46	0.1518	22.55	1/982	1/7748
SNV	Breast	TGS1_D786H_7	HLA-B15:01	RTMMSPHGF	0.9527	0.9659	0.2485	34.53	0.1821	22.55	1/982	1/7748
SNV	Breast	TGS1_D786H_5	HLA-B15:01	MMSPHGFEIF	0.9998	0.9031	0.1353	225.7	0.3871	22.55	1/982	1/7748
SNV	Breast	TGS1_D786H_5	HLA-C14:02	MMSPHGFEI	0.9144	0.9781	0.0745	38.62	0.3096	22.55	1/982	1/7748
SNV	Breast	ZFYVE19_G30V_7	HLA-B51:01	FPALGRVGTV	0.9563	0.6303	0.1182	173.03	0.2885	32.7	1/982	1/7748
SNV	Breast	ABCB1_G939A_6	HLA-B57:01	KAHIFAITF	0.9988	0.9362	0.0318	14.66	0.1319	2.56	1/982	1/7748
SNV	Breast	CYP4Z1_S360R_7	HLA-B57:01	ITWEHLRQM	0.9977	0.9846	0.2346	112.83	0.2913	3.41	1/982	1/7748
SNV	Breast	DAB2_P266A_2	HLA-B57:01	LARPTPQASF	0.9994	0.9854	0.505	278.94	0.4128	34.54	1/982	1/7748
SNV	Breast	IGSF10_Q539H_8	HLA-B57:01	KSGKLELHM	0.9955	0.9953	0.2171	367.1	0.449	2.85	1/982	1/7748
SNV	Breast	MFSD8_G343R_5	HLA-A02:01	ILLGRLIVV	0.9967	0.7332	0.1409	2.41	0.054	8.93	1/982	1/7748
SNV	Breast	MFSD8_G343R_7	HLA-B57:01	RAILLGRLI	0.9945	0.9657	0.782	347.17	0.4416	8.93	1/982	1/7748
SNV	Breast	MYSM1_R138Q_6	HLA-B57:01	LAKFGQRW	0.9996	0.995	0.4018	102.79	0.2847	8.82	1/982	1/7748
SNV	Breast	MYSM1_R138Q_7	HLA-B57:01	GLAKFGQRW	0.9838	0.9929	0.3669	28.17	0.1877	8.82	1/982	1/7748
SNV	Breast	MYSM1_R138Q_8	HLA-B57:01	QGLAKFGQRW	0.9993	0.9894	0.3734	337.42	0.4379	8.82	1/982	1/7748
SNV	Breast	PCLO_D4152H_3	HLA-B57:01	HAHTSYRHF	0.9625	0.9537	0.4587	182.48	0.3523	1.24	1/982	1/7748
SNV	Breast	SDF4_A180P_4	HLA-C05:01	VADPIRLNEEL	1	0.9441	0.1064	388.76	0.3716	29.1	1/982	1/7748
SNV	Breast	STAT3_V619L_7	HLA-B57:01	SSKEGGLTF	0.9951	0.9801	0.1509	10.46	0.1103	171.35	1/982	1/7748
SNV	Breast	STAT3_V619L_7	HLA-B57:01	SSKEGGLTFTW	1	0.9877	0.0343	5.16	0.0657	171.35	1/982	1/7748
SNV	Breast	STAT3_V619L_5	HLA-B44:02	KEGGLTFTW	0.9994	0.7787	0.0027	1.62	0.0223	171.35	1/982	1/7748
SNV	Breast	STAT3_V619L_6	HLA-B44:02	SKEGGLTFTW	0.9357	0.8138	0.9261	6.81	0.0938	171.35	1/982	1/7748
SNV	Breast	TJP3_R532W_9	HLA-B57:01	AVRMGRDLW	0.9977	0.9872	0.1556	3.41	0.0421	12.6	1/982	1/7748
SNV	Breast	TJP3_R532W_10	HLA-B57:01	LAVRMGRDLW	0.9997	0.9921	0.2024	90.25	0.2754	12.6	1/982	1/7748
SNV	Breast	UGGT2_Y652F_8	HLA-A02:01	RMMDASVFL	0.9963	0.6853	0.0123	1.29	0.0137	4.69	1/982	1/7748
SNV	Breast	UGGT2_Y652F_7	HLA-C05:01	MMDASVFL	1	0.9457	0.1445	39.89	0.1566	4.69	1/982	1/7748
SNV	Breast	UGGT2_Y652F_8	HLA-C05:01	RMMDASVFL	0.9929	0.9546	0.7907	9.42	0.0854	4.69	1/982	1/7748
SNV	Breast	WBSCR27_R203C_7	HLA-B57:01	VAWPVDCLW	0.9987	0.9824	0.0075	3.85	0.0486	6.13	1/982	1/7748
SNV	Breast	ACVR2A_N282I_9	HLA-A02:05	SLSDFLKAI	0.9975	0.5312	0.0151	10.96	0.0782	7.56	1/982	1/7748
SNV	Breast	IQCC_G200S_1	HLA-B35:01	SPIREEPRVF	0.9718	0.7111	0.4954	48.98	0.2429	1.11	1/982	1/7748
SNV	Breast	LAMP5_N265Y_9	HLA-B35:01	HVHHKMTAY	0.967	0.835	0.0634	52.45	0.2484	22.08	1/982	1/7748
SNV	Breast	NBPF12_E125Q_4	HLA-A02:05	SLNQHLQAL	0.9911	0.5114	0.1805	19.17	0.117	1.78	1/982	2/7748
SNV	Breast	PCSK5_T606S_6	HLA-B35:01	QPYSPSNEF	0.9912	0.9571	0.0357	1.36	0.0189	1.69	1/982	1/7748
SNV	Breast	PUS1_R346H_8	HLA-C04:01	HFEKYNQHF	0.986	0.7234	0.0408	70.05	0.0641	1.34	1/982	1/7748
SNV	Breast	TROVE2_R149W_8	HLA-A03:01	GMWGRALWK	0.998	0.7052	0.0127	5.91	0.0647	16.66	1/982	1/7748
SNV	Breast	CNOT1_N849Y_7	HLA-B35:01	EIDDEAYSY	0.8306	0.8561	0.7616	5.24	0.0925	37.9	1/982	1/7748
SNV	Breast	GPANK1_N208Y_1	HLA-C07:02	YRSPTPSL	0.9924	0.9543	0.2455	102.65	0.1968	6.09	1/982	1/7748
SNV	Breast	GPANK1_N208Y_1	HLA-C07:02	YRSPTPSLQY	0.9731	0.8903	0.1399	55.81	0.1427	6.09	1/982	1/7748
SNV	Breast	ILF2_L304I_9	HLA-C07:02	FRVHTVMTI	0.954	0.817	0.0414	27.75	0.0937	227.52	1/982	1/7748
SNV	Breast	MORN1_E94V_5	HLA-B35:01	FVLGVPQGY	0.9755	0.7304	0.0578	14.54	0.1568	1.2	1/982	1/7748
SNV	Breast	MORN1_E94V_1	HLA-B35:01	VPQGYGVMEY	0.9894	0.83	0.1781	3.95	0.0762	1.2	1/982	1/7748
SNV	Breast	RASGRF2_P389S_7	HLA-B35:01	YPMFQISRY	0.9996	0.7583	0.0051	1.12	0.0079	3.08	1/982	1/7748
SNV	Breast	RASGRF2_P389S_1	HLA-C07:02	SRYIITLHEL	0.9601	0.9582	0.2294	483.87	0.3926	3.08	1/982	1/7748
SNV	Breast	SSRP1_K90R_2	HLA-C07:02	FRTHYRLEL	0.9781	0.9422	0.0073	11.87	0.0558	45.57	1/982	1/7748
SNV	Breast	TMED2_V181D_1	HLA-B35:01	DAMTLGQIY	0.9932	0.5937	0.0706	2.45	0.0475	564.87	1/982	1/7748
SNV	Breast	TMED2_V181D_1	HLA-B35:01	DAMTLGQIYY	0.9916	0.5287	1.477	151.32	0.3499	564.87	1/982	1/7748
SNV	Breast	CEP76_A586S_2	HLA-B15:01	RSVPDGHTF	0.9753	0.8265	0.1255	5.49	0.0548	2.48	1/982	1/7748
SNV	Breast	CEP76_A586S_3	HLA-B15:01	RRSVPDGHTF	0.9354	0.7572	1.5753	132.25	0.3173	2.48	1/982	1/7748
SNV	Breast	CEP76_A586S_2	HLA-C16:01	RSVPDGHTF	0.736	0.9709	0.0314	6.04	0.0601	2.48	1/982	1/7748
SNV	Breast	CEP76_A586S_2	HLA-C03:03	RSVPDGHTF	0.9129	0.9731	0.215	40.03	0.1849	2.48	1/982	1/7748
SNV	Breast	EEF2K_R148Q_2	HLA-B15:01	FQTKKLSNF	0.9986	0.7396	0.0584	44.92	0.2063	16.61	1/982	1/7748
SNV	Breast	INTU_K935T_6	HLA-B44:03	IEIAFTLFF	0.9645	0.886	0.029	19.81	0.1577	3.46	1/982	1/7748
SNV	Breast	INTU_K935T_8	HLA-C16:01	IAIEIAFTL	0.9887	0.9798	0.049	2.68	0.0186	3.46	1/982	1/7748
SNV	Breast	INTU_K935T_2	HLA-C16:01	FTLFFGLTL	0.8964	0.9836	0.069	139.16	0.4934	3.46	3/982	3/7748
SNV	Breast	INTU_K935T_2	HLA-C16:01	FTLFFGLTL	0.8964	0.9836	0.069	139.16	0.4934	3.46	3/982	3/7748
SNV	Breast	INTU_K935T_2	HLA-C16:01	FTLFFGLTL	0.8964	0.9836	0.069	139.16	0.4934	3.46	3/982	3/7748
SNV	Breast	INTU_K935T_8	HLA-C03:03	IAIEIAFTL	0.9998	0.988	0.0139	1.5	0.0092	3.46	1/982	1/7748
SNV	Breast	INTU_K935T_2	HLA-C03:03	FTLFFGLTL	0.9929	0.9909	0.031	134.16	0.3066	3.46	3/982	3/7748
SNV	Breast	INTU_K935T_2	HLA-C03:03	FTLFFGLTL	0.9929	0.9909	0.031	134.16	0.3066	3.46	3/982	3/7748
SNV	Breast	INTU_K935T_2	HLA-C03:03	FTLFFGLTL	0.9929	0.9909	0.031	134.16	0.3066	3.46	3/982	3/7748
SNV	Breast	KIFC1_R655H_8	HLA-B44:03	SESLNSLHF	0.9989	0.9152	0.0174	2.51	0.0501	26.3	1/982	1/7748
SNV	Breast	TMTC4_M655L_3	HLA-A02:01	SLLFSLANV	0.9822	0.6339	0.097	12.42	0.176	3.98	1/982	1/7748
SNV	Breast	TMTC4_M655L_8	HLA-C16:01	IPNDHSLLF	0.5015	0.9738	0.7526	73.62	0.3626	3.98	1/982	1/7748
SNV	Breast	ADCY7_D203H_3	HLA-B15:01	MQHASRDLF	0.998	0.8048	0.0029	10.16	0.0965	1.11	1/982	1/7748
SNV	Breast	ADCY7_D203H_1	HLA-B15:01	HASRDLFTY	0.9487	0.8615	0.3756	210.86	0.3782	1.11	1/982	1/7748
SNV	Breast	ADRA2B_F181L_8	HLA-B15:01	LASSIGSLF	0.9891	0.8025	0.0537	122.12	0.3069	3.36	1/982	1/7748
SNV	Breast	ADRA2B_F181L_9	HLA-B15:01	ILASSIGSLF	0.9996	0.801	0.1963	486.33	0.515	3.36	1/982	1/7748
SNV	Breast	ADRA2B_F181L_8	HLA-C03:03	LASSIGSLF	0.9928	0.9868	0.1442	134.51	0.307	3.36	1/982	1/7748
SNV	Breast	ARHGAP29_E322D_6	HLA-C03:03	KMLEADNAL	0.8442	0.9761	0.905	300.84	0.4204	19.77	1/982	1/7748
SNV	Breast	ATP8B2_L75V_7	HLA-B15:01	TSKYNIVTF	0.9931	0.9216	0.251	119.43	0.304	13.61	1/982	1/7748
SNV	Breast	ATP8B2_L75V_6	HLA-C07:02	SKYNIVTFL	0.8045	0.8592	0.9331	92.81	0.187	13.61	1/982	1/7748
SNV	Breast	BACH2_C37Y_9	HLA-B15:01	DQRKKDILY	0.9559	0.6568	0.6189	443.43	0.498	1.99	1/982	1/7748
SNV	Breast	BRE_R172G_4	HLA-C03:03	FSAGFLLKL	0.9997	0.9913	0.0069	39.48	0.1839	21.06	1/982	1/7748
SNV	Breast	CDH8_E211K_5	HLA-B15:01	YSILKGQPY	0.9978	0.5707	0.1295	62.62	0.2422	1.14	1/982	1/7748
SNV	Breast	CDH8_E211K_4	HLA-B15:01	SILKGQPYF	0.8923	0.6364	0.5136	355.14	0.4602	1.14	1/982	1/7748
SNV	Breast	CLN3_H120Y_1	HLA-C03:03	YSHSVGTSL	0.9997	0.9882	0.0004	1.43	0.0082	6.71	1/982	1/7748
SNV	Breast	CLN3_H120Y_1	HLA-C07:02	YSHSVGTSL	0.8782	0.9616	0.7933	446.14	0.3806	6.71	1/982	1/7748
SNV	Breast	CNOT3_K736N_4	HLA-B15:01	GQRNKEGFTF	0.9999	0.9737	0.5464	10.15	0.0964	9.98	1/982	1/7748
SNV	Breast	CNOT3_K736N_3	HLA-C07:02	QRNKEGFTF	0.9602	0.9834	0.1631	46.83	0.1269	9.98	1/982	1/7748
SNV	Breast	DMKN_S219L_9	HLA-C03:03	AVAQPGYGL	0.9842	0.9929	0.7021	125.74	0.2983	8.45	1/982	1/7748
SNV	Breast	ESR1_L370F_1	HLA-C03:03	FTLHDQVHL	0.9998	0.9909	0.0319	83.74	0.2561	28.78	1/982	1/7748
SNV	Breast	ESR1_L370F_9	HLA-C07:02	KRVPGFVDF	0.9037	0.8603	0.0249	17.27	0.0714	28.78	1/982	1/7748
SNV	Breast	FGD4_A685T_7	HLA-B07:02	APQDVRTQA	0.9935	0.626	0.1256	13.24	0.134	7.23	1/982	1/7748
SNV	Breast	FGD4_A685T_7	HLA-B07:02	APQDVRTQATI	0.9993	0.6	0.1759	100.94	0.2646	7.23	1/982	1/7748
SNV	Breast	FGD4_A685T_1	HLA-B15:01	TQATIPLLGY	0.9999	0.6059	0.2722	55.4	0.229	7.23	1/982	1/7748
SNV	Breast	FGD4_A685T_3	HLA-C07:02	VRTQATIPL	0.7994	0.927	0.2011	347.33	0.3437	7.23	1/982	1/7748
SNV	Breast	FOXP1_R504G_6	HLA-C03:03	FAYFRGNAA	0.986	0.9927	0.6092	44.96	0.1934	16.64	1/982	1/7748
SNV	Breast	FOXP3_R114Q_2	HLA-B15:01	AQTPVLQVH	0.9967	0.8235	0.6381	440.59	0.4969	1.46	1/982	2/7748
SNV	Breast	FOXP3_R114Q_3	HLA-C03:03	HAQTPVLQV	0.9257	0.9879	0.1061	311.74	0.4262	1.46	1/982	2/7748
SNV	Breast	IQCA1_G398R_5	HLA-B15:01	AMKERCNAY	0.9995	0.7962	0.0441	4.56	0.0471	2.93	1/982	1/7748
SNV	Breast	KIAA2026_S1671F_9	HLA-B15:01	GSFPVTSAF	0.9959	0.9662	0.0201	3.88	0.0387	9.67	1/982	1/7748
SNV	Breast	KIAA2026_S1671F_9	HLA-C03:03	GSFPVTSAF	0.9971	0.9856	0.1038	21.97	0.146	9.67	1/982	1/7748
SNV	Breast	LDB2_T326M_7	HLA-B15:01	ITRLENMQY	0.9988	0.8475	0.3304	30.74	0.1724	30.89	1/982	1/7748
SNV	Breast	LDB2_T326M_1	HLA-B15:01	MQYDAANGM	0.9934	0.9783	0.0344	10.22	0.0971	30.89	1/982	1/7748
SNV	Breast	LDB2_T326M_1	HLA-C03:03	MQYDAANGM	0.9822	0.9957	0.8714	83.4	0.2556	30.89	1/982	1/7748
SNV	Breast	LDB2_T326M_1	HLA-C07:02	MQYDAANGM	0.829	0.9854	0.2811	334.92	0.3383	30.89	1/982	1/7748
SNV	Breast	MYO7A_M1071I_5	HLA-B15:01	KIPVITKIY	0.9966	0.7467	0.8445	246.98	0.3989	1.74	1/982	1/7748
SNV	Breast	NR3C1_L84R_5	HLA-C03:03	KAVSRSMGL	0.9948	0.9948	0.0929	22.93	0.1495	28.16	1/982	1/7748
SNV	Breast	PPME1_R32P_8	HLA-B15:01	SQSGAKMPM	0.9985	0.9464	0.1541	238.7	0.3944	9.26	1/982	1/7748
SNV	Breast	PTEN_N48I_2	HLA-B15:01	RINIDDVVRF	0.9995	0.9306	1.3764	73.92	0.2586	24.99	1/982	1/7748
SNV	Breast	PTPRD_F1203L_9	HLA-C07:02	HFDVLPTEL	0.9934	0.9866	0.106	94.64	0.1889	2.18	1/982	1/7748
SNV	Breast	RALGAPA2_M491I_9	HLA-C03:03	RTYSFTSAI	0.9781	0.974	0.3594	25.91	0.157	12.47	1/982	1/7748
SNV	Breast	RUFY1_H468Y_9	HLA-B15:01	KAINLQMFY	0.998	0.9474	0.4494	82.85	0.2692	15.52	1/982	1/7748
SNV	Breast	TIAL1_M232R_4	HLA-B15:01	GQIREIRVF	0.9996	0.9081	0.3275	3.2	0.0301	19.75	1/982	1/7748
SNV	Breast	TMEM248_T98I_3	HLA-C03:03	ASIQSPQAL	0.9996	0.9888	0.0301	7.35	0.0652	57.59	1/982	1/7748
SNV	Breast	TMTC2_L571V_8	HLA-B15:01	YLNTGIIVM	0.9872	0.7124	0.257	43.54	0.2029	4.85	1/982	1/7748
SNV	Breast	TMTC2_L571V_8	HLA-C03:03	YLNTGIIVM	0.9757	0.9204	0.2194	6.41	0.0594	4.85	1/982	1/7748
SNV	Breast	TMTC2_L571V_8	HLA-C07:02	YLNTGIIVM	0.5862	0.8055	0.7252	467.9	0.3876	4.85	1/982	1/7748
SNV	Breast	ZNF502_E264K_6	HLA-B15:01	RIHTGKKPY	0.9982	0.9257	0.1755	43.11	0.2019	6.47	1/982	1/7748
SNV	Breast	ZNF829_R372K_1	HLA-B15:01	KIHTDEKPY	0.9988	0.8275	0.2783	227	0.3879	2.13	1/982	1/7748
SNV	Breast	ZSWIM6_E605Q_8	HLA-B15:01	RQQQKQLQM	0.9985	0.6741	0.2913	50.55	0.2191	5.64	1/982	1/7748
SNV	Breast	ZSWIM6_E605Q_7	HLA-B15:01	QQQKQLQMF	0.9986	0.8196	0.1914	29.54	0.1695	5.64	1/982	1/7748
SNV	Breast	ZSWIM6_E605Q_8	HLA-B15:01	RQQQKQLQMF	0.9998	0.6303	0.3175	359.73	0.4624	5.64	1/982	1/7748
SNV	Breast	C16orf62_T372M_4	HLA-C08:02	HGDMVQNQL	0.9999	0.9844	0.0686	241.98	0.1057	9.54	1/982	1/7748
SNV	Breast	C19orf66_R44L_7	HLA-B14:02	DHTGVGLSI	0.9968	0.888	0.1155	396.28	0.0767	8.55	1/982	1/7748
SNV	Breast	C19orf66_R44L_9	HLA-C08:02	GSDHTGVGL	0.9998	0.9907	0.0535	428.47	0.1293	8.55	1/982	1/7748
SNV	Breast	CNR1_R340T_2	HLA-B57:03	ITLAKTLVL	0.9819	0.9899	0.1923	362	0.536	1.99	1/982	1/7748
SNV	Breast	EHD1_E180K_8	HLA-A74:01	AVLEWFAKR	0.9917	0.9406	0.0163	344.72	0.0479	16.39	1/982	1/7748
SNV	Breast	EHD1_E180K_1	HLA-C07:01	KRVDRIILL	0.9991	0.6365	0.0049	2.61	0.0057	16.39	1/982	1/7748
SNV	Breast	GPSM2_R558S_2	HLA-B57:03	RSLDDQRASF	0.9985	0.993	0.0499	13.66	0.1235	1.46	1/982	1/7748
SNV	Breast	GPSM2_R558S_1	HLA-C08:02	SLDDQRASF	0.999	0.9717	0.0341	29.97	0.0386	1.46	1/982	1/7748
SNV	Breast	KIAA1324L_S775P_5	HLA-B57:03	RAALPSQSI	0.9397	0.9808	0.8147	25.82	0.1627	5.08	1/982	1/7748
SNV	Breast	KIAA1324L_S775P_4	HLA-B57:03	AALPSQSII	0.7851	0.9333	1.2075	302.16	0.498	5.08	1/982	1/7748
SNV	Breast	NCOR1_I2235M_8	HLA-B57:03	AAQPGTEMF	0.6439	0.998	0.0805	9.89	0.0961	13.64	1/982	1/7748
SNV	Breast	NCOR1_I2235M_9	HLA-B57:03	AAAQPGTEMF	0.9703	0.9977	0.148	137.68	0.3682	13.64	1/982	1/7748
SNV	Breast	NCOR1_I2235M_9	HLA-C08:02	AAAQPGTEM	0.9518	0.9962	0.1638	170	0.0907	13.64	1/982	1/7748
SNV	Breast	PAPOLA_F367L_8	HLA-B57:03	KLFEAPNLF	0.9376	0.9902	0.3555	24.19	0.1572	22.17	1/982	1/7748
SNV	Breast	SBNO1_F213V_3	HLA-B57:03	RSVSPTMKV	0.9394	0.9592	0.4666	93.37	0.3117	9.26	1/982	1/7748
SNV	Breast	TCF7L2_A419T_8	HLA-A74:01	QLYPGWSTR	0.9845	0.5748	0.0288	91.21	0.015	20.91	1/982	1/7748
SNV	Breast	TNN_E377K_3	HLA-B57:03	STKVDYYKL	0.9126	0.8979	0.5933	370.18	0.5407	1.92	1/982	1/7748
SNV	Breast	GIT2_R412W_10	HLA-B44:02	LETTASKTNW	0.9981	0.551	0.1604	5.88	0.0879	3.89	1/982	1/7748
SNV	Breast	MADD_F295L_1	HLA-B35:01	LPLHLPLEL	0.9968	0.933	0.0569	8.76	0.1196	11.32	1/982	1/7748
SNV	Breast	MADD_F295L_4	HLA-C05:01	LVDLPLHL	1	0.9919	0.043	89.66	0.2121	11.32	1/982	1/7748
SNV	Breast	MADD_F295L_5	HLA-C05:01	TLVDLPLHL	0.9971	0.9837	0.1775	68.97	0.1921	11.32	1/982	1/7748
SNV	Breast	PIK3C2A_I248L_1	HLA-C05:01	LTDSKVSNL	1	0.876	0.0138	7.27	0.0735	16.73	1/982	1/7748
SNV	Breast	RASGRP3_S194P_5	HLA-C05:01	TLERPIALF	0.996	0.8475	0.4176	352.42	0.3592	2.19	1/982	1/7748
SNV	Breast	TRANK1_F2261Y_1	HLA-B35:01	YALKEYIHF	0.9937	0.8063	0.049	26.61	0.195	4.35	1/982	1/7748
SNV	Breast	WBP2_Y170S_7	HLA-B35:01	YPCPPGSPY	0.9984	0.8952	0.0056	1.47	0.0219	52.47	1/982	1/7748
SNV	Breast	WBP2_Y170S_8	HLA-B35:01	MYPCPPGSPY	0.9517	0.8765	1.6479	229.11	0.3924	52.47	1/982	1/7748
SNV	Breast	WBP2_Y170S_1	HLA-B35:01	SPYPPPPPEF	0.9942	0.8785	0.1646	12	0.1435	52.47	1/982	1/7748
SNV	Breast	WBP2_Y170S_1	HLA-B35:01	SPYPPPPPEFY	0.9992	0.8393	0.1695	18.37	0.1709	52.47	1/982	1/7748
SNV	Breast	MUC1_N280S_6	HLA-C07:02	SFHISSLQF	0.7005	0.8578	0.1136	101.61	0.1958	10.77	1/982	1/7748
SNV	Breast	TLN1_A1735V_1	HLA-B13:02	VQYFEPLTL	0.8857	0.8226	0.1369	50.43	0.0242	38.12	1/982	1/7748
SNV	Breast	TLN1_A1735V_1	HLA-C07:02	VQYFEPLTL	0.9079	0.9745	0.0862	368.85	0.3525	38.12	1/982	1/7748
SNV	Breast	TP53_N247I_1	HLA-C07:02	IRRPILTII	0.8354	0.841	0.3259	130.84	0.2225	34.08	1/982	2/7748
SNV	Breast	HUNK_Q680L_10	HLA-B08:01	MLRKRHQSLL	0.995	0.8901	0.4625	35.68	0.0934	1.14	1/982	1/7748
SNV	Breast	PPP2R2A_V357D_4	HLA-A25:01	DSVDMTGSY	0.9921	0.8904	0.0053	12.04	0.0085	12.92	1/982	1/7748
SNV	Breast	RPLP0_A262T_6	HLA-C03:04	YTFPLTEKV	0.9912	0.9923	0.0794	60.92	0.2226	460.9	1/982	1/7748
SNV	Breast	WDR47_L284V_5	HLA-C03:04	YADLVTPLI	0.9942	0.985	0.1374	121.98	0.2951	7.84	1/982	1/7748
SNV	Breast	WDR47_L284V_2	HLA-C03:04	LVTPLISKL	0.999	0.9616	0.2095	163.42	0.3337	7.84	1/982	1/7748
SNV	Breast	MUC16_S8053F_1	HLA-C15:02	FSNRTVTDV	0.9989	0.6042	0.2746	318.14	0.6375	1.49	1/982	1/7748
SNV	Breast	MUC16_S8053F_5	HLA-C15:02	KTHPFSNRTV	0.9985	0.9318	0.6108	478.91	0.7615	1.49	1/982	1/7748
SNV	Breast	NSUN5_A173T_2	HLA-B57:01	RTLKGKHF	0.9986	0.977	1.1954	131.59	0.3047	8.23	1/982	1/7748
SNV	Breast	NSUN5_A173T_2	HLA-B57:01	RTLKGKHFL	0.9891	0.9925	0.4079	19.48	0.1527	8.23	1/982	1/7748
SNV	Breast	NSUN5_A173T_8	HLA-C15:02	SSLDDLRTL	0.9991	0.7339	0.0655	89.84	0.3746	8.23	1/982	1/7748
SNV	Breast	NSUN5_A173T_2	HLA-C15:02	RTLKGKHFL	0.9957	0.9118	0.2041	15.22	0.1191	8.23	1/982	1/7748
SNV	Breast	AP2A1_V287L_9	HLA-A02:01	RLVECLETL	0.9959	0.7464	0.0804	13.63	0.1843	7.76	1/982	1/7748
SNV	Breast	CDK12_D86N_4	HLA-C08:02	FSDNMAFKL	0.9999	0.9415	0.0182	14.4	0.0247	12.53	1/982	1/7748
SNV	Breast	DST_F5262Y_4	HLA-B14:02	YRFYLGNQF	0.9487	0.7163	0.3063	162.09	0.0473	69.98	1/982	1/7748
SNV	Breast	MUC16_P13476L_5	HLA-A68:02	MTASLLLVL	0.9887	0.8631	0.1055	185.4	0.3039	1.27	1/982	1/7748
SNV	Breast	PSME4_D94V_5	HLA-B57:01	FSKEVHVLF	0.9996	0.9286	0.0736	71.41	0.2587	38.84	1/982	1/7748
SNV	Breast	PSME4_D94V_6	HLA-B57:01	KFSKEVHVLF	0.9984	0.9553	1.7473	31.93	0.1973	38.84	1/982	1/7748
SNV	Breast	CARNS1_L86P_8	HLA-C12:03	ASAELARPL	0.9944	0.973	0.1274	93.66	0.5047	1.43	1/982	1/7748
SNV	Breast	CASZ1_S700L_4	HLA-C07:02	IRSLGALGL	0.8088	0.9647	0.2351	64.12	0.1547	35.03	1/982	1/7748
SNV	Breast	CBFB_I102M_9	HLA-C12:03	KVYLKAPMM	0.7822	0.9632	1.838	15.49	0.1787	34.46	1/982	1/7748
SNV	Breast	KCNQ5_S296P_7	HLA-A25:01	DANKEFPTY	0.9847	0.931	0.0446	397.8	0.0634	2.12	1/982	1/7748
SNV	Breast	MAST3_T543M_2	HLA-A02:01	GMPEYIAPEV	0.9939	0.5478	0.7385	13.68	0.1846	4.13	1/982	2/7748
SNV	Breast	PLXNB2_E1269K_1	HLA-A03:01	KAGIPVLDYK	0.9896	0.5847	0.5144	105.98	0.2865	56.18	1/982	2/7748
SNV	Breast	STAT2_E801D_5	HLA-A02:01	HLNTDPMEI	0.9689	0.5518	1.2221	43.25	0.2877	35.53	1/982	1/7748
SNV	Breast	ZGRF1_R2032S_6	HLA-B08:01	LTRGKSHLL	0.9797	0.8707	0.148	313.18	0.2768	1.39	1/982	1/7748
SNV	Breast	ZNF700_R462G_8	HLA-C07:01	FRSTSHLGV	0.952	0.6365	0.25	205	0.1168	7.86	1/982	1/7748
SNV	Breast	ADAM12_L287P_4	HLA-B18:01	HEFPDWRKM	0.9918	0.9912	0.036	2.53	0.0118	23.45	1/982	1/7748
SNV	Breast	ADAM12_L287P_2	HLA-C05:01	FPDWRKMKL	0.8321	0.9534	0.1711	159.02	0.2623	23.45	1/982	1/7748
SNV	Breast	ASPM_Q1332H_4	HLA-B08:01	VLAHRKLL	0.9974	0.5281	0.4539	330.77	0.2827	9.04	1/982	1/7748
SNV	Breast	ASPM_Q1332H_6	HLA-C07:01	RRVLAHRKL	0.9747	0.6387	0.073	432.97	0.1645	9.04	1/982	1/7748
SNV	Breast	DUS1L_E287K_1	HLA-A02:01	KLREELAKV	0.9857	0.7341	0.3076	8.29	0.1434	12.13	1/982	1/7748
SNV	Breast	FMO1_I443M_9	HLA-C05:01	YIDELLTYM	0.9998	0.9367	0.0138	1.09	0.0034	6.32	1/982	1/7748
SNV	Breast	FMO1_I443M_2	HLA-C05:01	YMNAKPNLF	0.8305	0.9506	0.6676	55.44	0.1768	6.32	1/982	1/7748
SNV	Breast	IPP_H124Y_9	HLA-A02:01	MLQLTEVVYL	0.9862	0.7528	0.6406	462.46	0.6582	15.74	1/982	1/7748
SNV	Breast	IRF1_L152F_5	HLA-C05:01	FSDGFSSSTL	1	0.9352	0.0209	37.08	0.1522	9.88	1/982	1/7748
SNV	Breast	MAN2B2_V816L_2	HLA-A02:01	SLVHPVLWL	0.9402	0.7279	0.132	37.44	0.2736	4.67	1/982	1/7748
SNV	Breast	NADK2_M428L_2	HLA-A02:01	MLINKEDEL	0.985	0.6824	0.7602	27.94	0.2457	14.45	1/982	1/7748
SNV	Breast	NIPBL_L437V_10	HLA-A02:01	FLPANQVPVV	0.9877	0.7511	0.4015	15.61	0.1963	15.71	1/982	1/7748
SNV	Breast	PDE4B_L24F_5	HLA-B18:01	FECSFSKSY	0.9985	0.8477	0.0043	7.01	0.0477	24.72	1/982	1/7748
SNV	Breast	PRKCSH_S282F_6	HLA-B08:01	RDKYRFEAL	0.9278	0.6205	0.2102	446.33	0.3184	75.97	1/982	1/7748
SNV	Breast	PRKCSH_S282F_3	HLA-C07:01	YRFEALPTDL	0.9965	0.8144	0.073	53.94	0.068	75.97	1/982	1/7748
SNV	Breast	RAD51_F86L_7	HLA-A02:01	KLVPMGLTTA	0.9637	0.7388	0.3842	421.98	0.638	3.85	1/982	1/7748
SNV	Breast	RNF157_G30E_2	HLA-B18:01	SESYFASHF	0.996	0.9517	0.0208	11.74	0.0666	1.87	1/982	1/7748
SNV	Breast	RNF157_G30E_8	HLA-C07:01	YRYPPKSESY	0.999	0.5049	0.0091	17.62	0.0347	1.87	1/982	1/7748
SNV	Breast	RNF157_G30E_8	HLA-C07:01	YRYPPKSESYF	0.9999	0.5281	0.0851	61.63	0.072	1.87	1/982	1/7748
SNV	Breast	VNN2_P101L_2	HLA-A02:01	ILDPQVNWI	0.984	0.6089	0.4195	3.25	0.0712	1.97	1/982	1/7748
SNV	Breast	VNN2_P101L_6	HLA-A02:01	YLEDILDPQV	0.9974	0.6252	0.5471	3.08	0.0679	1.97	1/982	1/7748
SNV	Breast	VNN2_P101L_2	HLA-C05:01	ILDPQVNWI	0.9985	0.985	0.017	1.95	0.0235	1.97	1/982	1/7748
SNV	Breast	VNN2_P101L_6	HLA-C05:01	YLEDILDPQV	0.9995	0.956	0.5364	263.22	0.3223	1.97	1/982	1/7748
SNV	Breast	CAPN15_W982L_7	HLA-A24:02	YYLTHGLAGL	0.9907	0.7769	0.3028	199.42	0.549	7.53	1/982	1/7748
SNV	Breast	FAM83F_D269Y_1	HLA-C06:02	YRNLLLLL	0.9788	0.9869	0.3954	494.74	0.2067	7.46	1/982	1/7748
SNV	Breast	FAM83F_D269Y_3	HLA-C03:04	HVYRNLLLL	0.9673	0.9642	0.2975	72.24	0.2406	7.46	1/982	1/7748
SNV	Breast	POSTN_G483S_1	HLA-C03:04	SAIHIFREI	0.9989	0.9827	0.0794	53.1	0.2081	119.24	1/982	1/7748
SNV	Breast	ALS2_G655A_3	HLA-C12:03	HSASKTPVL	0.9981	0.9736	0.105	12.77	0.1508	8.82	1/982	1/7748
SNV	Breast	ALS2_G655A_2	HLA-C12:03	SASKTPVLL	0.9917	0.974	0.0594	19.58	0.2065	8.82	1/982	1/7748
SNV	Breast	CCT7_Q86L_9	HLA-C12:03	TLVDIAKSL	0.9962	0.975	0.3841	88.08	0.4897	95.64	1/982	1/7748
SNV	Breast	CNPY2_R102H_8	HLA-A11:01	QIDPSTHHK	0.9979	0.5364	0.2636	14.63	0.1155	11.57	1/982	1/7748
SNV	Breast	DDX19B_C167R_6	HLA-B35:01	YPQCLRLSPTY	0.9989	0.5024	0.509	308.66	0.4282	7.92	1/982	1/7748
SNV	Breast	F11R_N185S_5	HLA-C12:03	RAFSSSSY	0.8471	0.9357	1.1363	340.54	0.9238	27.89	1/982	1/7748
SNV	Breast	F11R_N185S_5	HLA-C12:03	RAFSSSSYV	0.8679	0.9649	0.1274	4.97	0.0598	27.89	1/982	1/7748
SNV	Breast	FAM83A_I174M_8	HLA-B35:01	DVFTDVEMF	0.9749	0.8924	0.581	99.24	0.3066	1.22	1/982	1/7748
SNV	Breast	FGD6_E1375G_5	HLA-C12:03	VAALGSQPL	0.9754	0.9733	0.1151	74.9	0.4518	7.62	1/982	1/7748
SNV	Breast	FGD6_E1375G_4	HLA-C12:03	AALGSQPLL	0.9647	0.9725	0.2918	175.74	0.6864	7.62	1/982	1/7748
SNV	Breast	HECW2_D1228Y_1	HLA-B35:01	YAFNQIMGY	0.9973	0.9321	0.0176	1.49	0.0226	3.05	1/982	1/7748
SNV	Breast	HECW2_D1228Y_1	HLA-C12:03	YAFNQIMGY	0.6367	0.9907	0.0165	1.41	0.0049	3.05	1/982	1/7748
SNV	Breast	ILK_G180A_7	HLA-C12:03	RTRPRNATL	0.9313	0.9707	0.4612	7.19	0.0917	9.4	1/982	1/7748
SNV	Breast	KLHL7_E427G_3	HLA-B35:01	MVGANGLIY	0.9055	0.8347	0.1281	30.35	0.2045	10.55	1/982	1/7748
SNV	Breast	MIA3_T272S_2	HLA-B35:01	MSLDLKTKF	0.9897	0.8598	0.0879	325.99	0.4351	22.29	1/982	1/7748
SNV	Breast	MIA3_T272S_2	HLA-C12:03	MSLDLKTKF	0.9781	0.9802	0.1451	21.73	0.2221	22.29	1/982	1/7748
SNV	Breast	MYH7B_F882V_2	HLA-C12:03	LVFKMKPLL	0.9183	0.9792	1.0953	184.54	0.7023	1.35	1/982	1/7748
SNV	Breast	NRIP1_S333P_6	HLA-C12:03	QARTSPSKL	0.8507	0.9813	0.3746	316.48	0.8966	51.01	1/982	1/7748
SNV	Breast	NT5DC3_D104V_8	HLA-B35:01	EIYGFDYVY	0.9683	0.6502	0.6208	5.27	0.0928	8.69	1/982	1/7748
SNV	Breast	NT5DC3_D104V_5	HLA-C04:01	GFDYVYTL	0.9995	0.673	0.1496	167.75	0.0896	8.69	1/982	1/7748
SNV	Breast	NT5DC3_D104V_5	HLA-C04:01	GFDYVYTLV	0.9928	0.6816	0.1983	22.28	0.038	8.69	1/982	1/7748
SNV	Breast	NT5DC3_D104V_6	HLA-C12:03	YGFDYVYTL	0.9613	0.9733	0.0979	2.32	0.0151	8.69	1/982	1/7748
SNV	Breast	PPP4R4_T836A_7	HLA-C12:03	SSFSPNAPL	0.9906	0.9743	0.0075	28.81	0.2689	1.42	1/982	1/7748
SNV	Breast	PTBP3_Y305F_9	HLA-B35:01	APGIISSPF	0.991	0.8967	0.0693	170.39	0.362	28.98	1/982	1/7748
SNV	Breast	PTBP3_Y305F_3	HLA-B35:01	SPFAGAAGF	0.9913	0.9175	0.0109	1.44	0.0213	28.98	1/982	1/7748
SNV	Breast	SLC25A12_A528V_7	HLA-C12:03	LAAGAMVGV	0.8751	0.9869	0.6452	91.03	0.4974	14.09	1/982	1/7748
SNV	Breast	SLC25A12_A528V_2	HLA-C12:03	MVGVPAASL	0.9958	0.9876	0.4406	175.75	0.6865	14.09	1/982	1/7748
SNV	Breast	TMED8_F171L_9	HLA-C12:03	WTFAKVKEL	0.9832	0.9878	0.1172	9.86	0.1218	11.43	1/982	1/7748
SNV	Breast	TMED8_F171L_5	HLA-C12:03	KVKELKSKL	0.7088	0.971	1.1884	332.08	0.9143	11.43	1/982	1/7748
SNV	Breast	TOPBP1_N784S_2	HLA-C12:03	MSRFQSKAF	0.795	0.9747	0.2609	60.07	0.4003	16.78	1/982	1/7748
SNV	Breast	NRK_G281R_4	HLA-B57:01	KSSRWSRKF	0.9961	0.9834	0.0656	3.05	0.0373	8.49	1/982	1/7748
SNV	Breast	NRK_G281R_9	HLA-B57:01	SAPTVKSSRW	0.9992	0.8679	0.2955	56.09	0.2408	8.49	1/982	1/7748
SNV	Breast	NUP35_S205Y_4	HLA-B57:01	HVMYNTGNW	0.9888	0.9627	0.2596	17.42	0.1439	16.82	1/982	1/7748
SNV	Breast	ATXN1_H279Q_5	HLA-A02:01	TMIPQTLTL	0.9625	0.6359	0.1243	3.84	0.0792	41.66	1/982	1/7748
SNV	Breast	ATXN1_H279Q_5	HLA-B15:01	TMIPQTLTL	0.9916	0.9353	0.071	76.54	0.2618	41.66	1/982	1/7748
SNV	Breast	ATXN1_H279Q_5	HLA-C03:04	TMIPQTLTL	0.9984	0.9901	0.0362	3.66	0.0371	41.66	1/982	1/7748
SNV	Breast	DCTN4_T88S_3	HLA-C03:04	RASSISTQL	0.9993	0.9896	0.0195	3.73	0.0376	62.7	1/982	1/7748
SNV	Breast	MAPK6_V262L_5	HLA-B15:01	ELLSLIPVY	0.9372	0.7856	0.5867	399.49	0.4802	46.64	1/982	1/7748
SNV	Breast	MAPK6_V262L_6	HLA-B18:01	QELLSLIPVY	0.9456	0.732	0.1273	97.37	0.1499	46.64	1/982	1/7748
SNV	Breast	MOV10_V85G_1	HLA-C07:01	GRFPEKRRM	0.9933	0.7439	0.0851	103.41	0.0884	23.29	1/982	1/7748
SNV	Breast	MSR1_S20Y_1	HLA-B15:01	YVKFDARSM	0.972	0.8142	0.7412	321.42	0.4433	48.14	1/982	1/7748
SNV	Breast	PIK3CA_E365V_7	HLA-A02:01	GIYHGGVPL	0.8839	0.6718	0.5905	204.45	0.5105	14.3	1/982	2/7748
SNV	Breast	PIK3CA_E365V_7	HLA-C03:04	GIYHGGVPL	0.9874	0.9943	0.6144	181.97	0.3484	14.3	1/982	2/7748
SNV	Breast	SMG5_C281Y_9	HLA-B15:01	KLSPGKKRY	0.9969	0.7505	0.3957	15.69	0.1236	120.3	1/982	1/7748
SNV	Breast	SMG5_C281Y_3	HLA-C07:01	KRYKDIKRL	0.9976	0.7329	0.0876	157.49	0.107	120.3	1/982	1/7748
SNV	Breast	ARHGAP21_P836H_4	HLA-B13:02	SQVHSIATV	0.9359	0.7678	0.0767	209.87	0.0812	29.52	1/982	1/7748
SNV	Breast	ATP10A_G807R_5	HLA-C07:01	YAAERLRTL	0.9674	0.7102	0.5445	176.17	0.1111	2.85	1/982	1/7748
SNV	Breast	ATP10A_G807R_5	HLA-C06:02	YAAERLRTL	0.9994	0.9865	0.011	74.14	0.0833	2.85	1/982	1/7748
SNV	Breast	FLNA_R655H_1	HLA-A02:01	HLSPFMADI	0.9844	0.5341	0.1881	379.16	0.6144	190.75	1/982	1/7748
SNV	Breast	FLNA_R655H_5	HLA-B18:01	SEDIHLSPF	0.9855	0.9339	0.0488	289.91	0.2237	190.75	1/982	1/7748
SNV	Breast	GLA_T39M_3	HLA-C07:01	ARMPTMGWL	0.9949	0.8409	0.051	122	0.0964	25.55	1/982	1/7748
SNV	Breast	GRHL3_S363L_2	HLA-A02:01	SLQKGVKGV	0.908	0.5731	0.6281	489.05	0.6706	2.69	1/982	1/7748
SNV	Breast	IGSF1_Q725K_8	HLA-B13:02	GEQEPVQKL	0.9987	0.5142	0.0338	450.46	0.1457	3.47	1/982	1/7748
SNV	Breast	KAT8_A172V_3	HLA-B18:01	HEVITKVKY	0.9987	0.8591	0.0049	2.43	0.0105	12.85	1/982	1/7748
SNV	Breast	KAT8_A172V_4	HLA-B18:01	EHEVITKVKY	0.7509	0.7875	1.9958	496.22	0.2613	12.85	1/982	1/7748
SNV	Breast	N4BP2_D1620V_10	HLA-A02:01	FQDFEYPDYV	0.9925	0.6109	1.3845	104.01	0.3966	5.91	1/982	1/7748
SNV	Breast	N4BP2_D1620V_9	HLA-B13:02	QDFEYPDYV	0.8237	0.8487	0.4811	69.72	0.0361	5.91	1/982	1/7748
SNV	Breast	N4BP2_D1620V_7	HLA-B18:01	FEYPDYVDY	0.9934	0.9347	0.0088	1.49	0.0046	5.91	1/982	1/7748
SNV	Breast	PLOD2_R547H_7	HLA-B18:01	KEKYINHDY	0.9472	0.848	0.2985	370.43	0.2405	25.8	1/982	1/7748
SNV	Breast	PMEL_G165S_4	HLA-A02:01	VLGSPVSGL	0.9312	0.5749	0.5374	409.85	0.6316	2.27	1/982	1/7748
SNV	Breast	PNPT1_V649I_7	HLA-B18:01	DEETFSIF	0.9993	0.9522	0.1668	227.11	0.207	9.47	1/982	1/7748
SNV	Breast	ABCB7_N714S_2	HLA-B57:01	QSHDNPKW	0.9996	0.9913	0.6055	408.02	0.4629	21.38	1/982	1/7748
SNV	Breast	ABCB7_N714S_3	HLA-B57:01	VQSHDNPKW	0.9292	0.9911	0.3403	174.17	0.3455	21.38	1/982	1/7748
SNV	Breast	ABCB7_N714S_4	HLA-B57:01	RVQSHDNPKW	0.9995	0.9895	0.0736	3.06	0.0375	21.38	1/982	1/7748
SNV	Breast	ADH1C_T314M_8	HLA-B57:01	MLLLTGRMW	0.9668	0.9897	0.1695	324.81	0.4329	11.05	1/982	1/7748
SNV	Breast	ARAF_G496E_8	HLA-C05:01	QSDVYAYEV	0.9999	0.968	0.1711	60.09	0.1824	25.45	1/982	1/7748
SNV	Breast	CCNA2_V85F_4	HLA-B44:02	DEHFTVPPW	0.9979	0.5343	0.0305	10.19	0.1124	21.41	1/982	1/7748
SNV	Breast	CD46_C35G_5	HLA-C05:01	FSDAGEEPPTF	1	0.9378	0.1651	460.69	0.393	115.3	1/982	1/7748
SNV	Breast	CHIC2_R112Q_3	HLA-B57:01	RTQRSIEKL	0.9965	0.9528	0.8017	66.7	0.2538	19.92	1/982	1/7748
SNV	Breast	CHIC2_R112Q_1	HLA-B57:01	QRSIEKLLEW	0.9985	0.9926	1.5867	42.17	0.2188	19.92	1/982	1/7748
SNV	Breast	COL15A1_L1134M_5	HLA-B57:01	GSRNMVTAF	0.9669	0.9832	0.6055	100.64	0.2832	34.96	1/982	1/7748
SNV	Breast	DYNC2H1_G3025V_2	HLA-B57:01	MVIFDTSW	0.9989	0.9793	1.1555	311.14	0.4272	2.66	1/982	1/7748
SNV	Breast	FZD6_R647W_9	HLA-B57:01	AGSVSESAW	0.9844	0.993	0.3331	474.82	0.4829	38.4	1/982	1/7748
SNV	Breast	FZD6_R647W_10	HLA-B57:01	QAGSVSESAW	0.9971	0.9939	0.2705	446.84	0.4749	38.4	1/982	1/7748
SNV	Breast	GRB14_H242Y_1	HLA-B57:01	YAKEQGKKSW	0.9998	0.9842	0.2171	17.31	0.1435	1.65	1/982	1/7748
SNV	Breast	ALMS1_S2958L_10	HLA-B35:03	LPQGQDSIAL	0.9499	0.7912	0.0633	55.77	0.0808	2.98	1/982	1/7748
SNV	Breast	EFCC1_S585C_4	HLA-B35:03	APACAAAAL	0.9687	0.9314	0.0391	42.65	0.0719	1.5	1/982	1/7748
SNV	Breast	FYTTD1_N77Y_7	HLA-A24:02	RWGIQQYSGF	0.9823	0.6141	0.3884	97.18	0.4487	18.2	1/982	1/7748
SNV	Breast	SPPL2A_D318N_8	HLA-A24:02	RWAWILQNI	0.9915	0.6101	0.1651	10.54	0.2206	11.26	1/982	1/7748
SNV	Breast	AGTPBP1_L80F_5	HLA-C12:03	NTKDFQTTL	0.9883	0.9727	0.0961	17.93	0.195	6.09	1/982	1/7748
SNV	Breast	BCR_E771Q_4	HLA-B18:01	DELQAVPNI	0.9281	0.9358	0.1875	59.36	0.126	16.73	1/982	1/7748
SNV	Breast	BCR_E771Q_1	HLA-C17:01	QAVPNIPLV	0.9141	0.9762	0.1775	409.64	0.4345	16.73	1/982	1/7748
SNV	Breast	BCR_E771Q_1	HLA-C12:03	QAVPNIPLV	0.9395	0.9868	0.08	33	0.2955	16.73	1/982	1/7748
SNV	Breast	CPVL_D178V_8	HLA-B18:01	NEDDVARVL	0.9676	0.8979	0.184	11.99	0.0671	10.76	1/982	1/7748
SNV	Breast	CPVL_D178V_8	HLA-B18:01	NEDDVARVLY	0.9917	0.9073	0.0624	8	0.0539	10.76	1/982	1/7748
SNV	Breast	CPVL_D178V_4	HLA-C12:03	VARVLYSAL	0.9781	0.9836	0.2391	100.07	0.5224	10.76	1/982	1/7748
SNV	Breast	CPVL_D178V_1	HLA-C12:03	VLYSALIQF	0.9161	0.97	0.7788	232.12	0.7895	10.76	1/982	1/7748
SNV	Breast	IL12RB2_E682K_5	HLA-B42:01	YPIAKEKTQL	0.9831	0.5129	0.0989	3.89	0.0738	2.9	1/982	1/7748
SNV	Breast	ITGA6_K222N_4	HLA-B18:01	VEQNNNTFF	0.9468	0.6588	0.1273	254.85	0.2149	13.15	1/982	1/7748
SNV	Breast	ITSN2_L561I_2	HLA-C12:03	LINERIKNM	0.9915	0.9546	0.6956	197	0.7271	8.93	1/982	1/7748
SNV	Breast	MID1IP1_Q30H_1	HLA-C17:01	HTVMVPSLL	0.5913	0.9464	0.5425	437.21	0.4493	10.77	1/982	1/7748
SNV	Breast	MID1IP1_Q30H_1	HLA-C12:03	HTVMVPSLL	0.7978	0.969	0.3124	58.83	0.3966	10.77	1/982	1/7748
SNV	Breast	MUC16_D8666N_8	HLA-B42:01	SPSSVLANL	0.6474	0.527	0.0371	1.76	0.0322	1.17	1/982	1/7748
SNV	Breast	MUC16_L12186I_7	HLA-C17:01	TLDRNSIYV	0.7555	0.6258	0.3585	28.74	0.0857	1.17	1/982	1/7748
SNV	Breast	MUC16_L12186I_8	HLA-C17:01	YTLDRNSIYV	0.9431	0.6092	1.9728	120.84	0.2341	1.17	1/982	1/7748
SNV	Breast	MUC16_S2558L_9	HLA-C12:03	VVTGSSATL	0.9106	0.9794	0.523	52.1	0.3754	1.17	1/982	1/7748
SNV	Breast	MUC16_S2558L_5	HLA-C12:03	SSATLEASL	0.9724	0.9821	0.252	479.83	1.058	1.17	1/982	1/7748
SNV	Breast	N4BP2L2_K527N_5	HLA-C12:03	VSRKNIAQM	0.9268	0.9834	0.1121	36.52	0.3136	16.13	1/982	1/7748
SNV	Breast	PHLDB2_E564Q_7	HLA-B42:01	FPKASSQSSYL	0.9912	0.6078	0.1988	215.07	0.4099	2.36	1/982	1/7748
SNV	Breast	PHLDB2_E564Q_5	HLA-C12:03	KASSQSSYL	0.8136	0.9626	0.1294	47.05	0.3577	2.36	1/982	1/7748
SNV	Breast	PRRC2C_R2547T_6	HLA-C17:01	HLLQATANL	0.5794	0.9627	0.9254	234.72	0.3312	40.89	1/982	1/7748
SNV	Breast	RAD51C_P21S_5	HLA-B42:01	FPLSSAVRV	0.7986	0.9166	0.1078	92.8	0.3177	7.85	1/982	1/7748
SNV	Breast	RAD51C_P21S_7	HLA-C17:01	VSFPLSSAV	0.8119	0.9707	0.1116	175.54	0.2843	7.85	1/982	1/7748
SNV	Breast	RAD51C_P21S_7	HLA-C12:03	VSFPLSSAV	0.9966	0.9899	0.0149	5.25	0.0631	7.85	1/982	1/7748
SNV	Breast	RAD51C_P21S_3	HLA-C12:03	LSSAVRVKL	0.99	0.9922	0.2361	149.99	0.6362	7.85	1/982	1/7748
SNV	Breast	SCIN_D44N_7	HLA-B18:01	GDFYVGNAY	0.5097	0.7994	0.244	73.07	0.136	12.09	1/982	1/7748
SNV	Breast	SCIN_D44N_4	HLA-C12:03	YVGNAYLVL	0.8868	0.9808	0.5283	24.55	0.2404	12.09	1/982	1/7748
SNV	Breast	SCIN_D44N_1	HLA-C12:03	NAYLVLHTA	0.9211	0.9686	1.986	455.02	1.0362	12.09	1/982	1/7748
SNV	Breast	SKIL_G505V_9	HLA-C12:03	LVRDINKVV	0.7878	0.9789	0.8424	244.32	0.808	13.38	1/982	1/7748
SNV	Breast	SLC38A5_F41L_9	HLA-B42:01	APGSKPVQLM	0.7525	0.6398	0.204	102.64	0.3284	11.78	1/982	1/7748
SNV	Breast	SLC38A5_F41L_11	HLA-B42:01	GPAPGSKPVQL	0.9906	0.6898	0.1477	249.75	0.433	11.78	1/982	1/7748
SNV	Breast	SMG6_A1157P_3	HLA-C12:03	SVPPVPDTM	0.7067	0.9751	0.2148	13.63	0.1607	2.92	1/982	1/7748
SNV	Breast	SRCAP_E334K_5	HLA-B42:01	LPLEKLLRSL	0.9909	0.8736	0.2725	60.3	0.2738	13.06	1/982	1/7748
SNV	Breast	SUCO_E610Q_3	HLA-A24:02	WFQSETQIF	0.9928	0.5029	0.1956	7.07	0.1825	11.7	1/982	1/7748
SNV	Breast	TRIM29_S373F_2	HLA-A24:02	DFVLFLQEF	0.9843	0.6678	0.439	208.83	0.5554	29.58	1/982	1/7748
SNV	Breast	TRIM29_S373F_5	HLA-C17:01	SISDFVLFL	0.5519	0.8539	0.0193	10.41	0.0383	29.58	1/982	1/7748
SNV	Breast	TRIM29_S373F_6	HLA-C12:03	HSISDFVLF	0.8553	0.9893	0.283	60.46	0.4018	29.58	1/982	1/7748
SNV	Breast	TRIM29_S373F_5	HLA-C12:03	SISDFVLFL	0.985	0.9857	0.2116	43.25	0.343	29.58	1/982	1/7748
SNV	Breast	ADAM28_E340Q_4	HLA-C03:04	MAHQMGHNF	0.9967	0.9877	0.1275	75.19	0.2448	5.29	1/982	1/7748
SNV	Breast	ADAM28_E340Q_4	HLA-C02:02	MAHQMGHNF	0.6206	0.9291	0.0365	197.62	0.2642	5.29	1/982	1/7748
SNV	Breast	AGFG1_S443F_8	HLA-A02:01	FVAAAGPFV	0.9881	0.5882	0.0653	5.55	0.1118	24.11	1/982	1/7748
SNV	Breast	AGFG1_S443F_8	HLA-C03:04	FVAAAGPFV	0.6755	0.9951	0.9034	187.55	0.3525	24.11	1/982	1/7748
SNV	Breast	AGFG1_S443F_1	HLA-C03:04	FVASSTNPF	0.988	0.9941	0.044	24.45	0.1535	24.11	1/982	1/7748
SNV	Breast	AGFG1_S443F_8	HLA-C02:02	FVAAAGPFV	0.547	0.9905	0.8858	59.83	0.1195	24.11	1/982	1/7748
SNV	Breast	AGFG1_S443F_1	HLA-C02:02	FVASSTNPF	0.518	0.9914	0.0119	90.79	0.1481	24.11	1/982	1/7748
SNV	Breast	AIFM1_P45A_6	HLA-B27:02	QRWHVALEL	0.9999	0.572	0.0213	1.43	0.0487	45.01	1/982	1/7748
SNV	Breast	ANXA10_E97K_1	HLA-A02:01	KLWHAMKGV	0.9876	0.6759	0.0989	13.87	0.1858	1.19	1/982	1/7748
SNV	Breast	ARHGEF19_G662R_1	HLA-A02:01	RIPGHVFLL	0.9093	0.5562	0.1989	107.87	0.4017	42.53	1/982	1/7748
SNV	Breast	ARHGEF19_G662R_2	HLA-B27:02	QRIPGHVF	0.9999	0.5121	0.701	133.88	0.4261	42.53	1/982	1/7748
SNV	Breast	ARHGEF19_G662R_1	HLA-C02:02	RIPGHVFLL	0.633	0.9849	0.6916	157.53	0.2274	42.53	1/982	1/7748
SNV	Breast	ARIH1_L518M_2	HLA-A02:01	SMQDIKQKV	0.9934	0.5868	0.3137	66.89	0.3398	12.2	1/982	1/7748
SNV	Breast	ASPM_Q2234E_4	HLA-C03:04	IQFERYNKL	0.8505	0.9769	0.8436	471.98	0.4933	3.4	1/982	1/7748
SNV	Breast	ASPM_Q2234E_4	HLA-C02:02	IQFERYNKL	0.7522	0.9516	1.0429	383.28	0.3961	3.4	1/982	1/7748
SNV	Breast	C1orf112_I302V_3	HLA-B40:01	EEVAGAFLVTL	0.9973	0.5078	0.2868	206.87	0.5395	5.88	1/982	1/7748
SNV	Breast	C1orf112_I302V_1	HLA-C03:04	VAGAFLVTL	0.9997	0.9916	0.0816	53.87	0.2096	5.88	1/982	1/7748
SNV	Breast	C2orf16_E500Q_6	HLA-C03:04	VAQSEQVIL	0.9992	0.9763	0.1825	156.07	0.3273	1.38	1/982	1/7748
SNV	Breast	CACNA1D_H1480Y_7	HLA-C03:04	WSILGPYHL	0.9992	0.9882	0.384	127.59	0.2998	10.64	1/982	1/7748
SNV	Breast	CAPN8_I670M_1	HLA-B27:02	MRLETLFKL	0.9999	0.603	0.0325	1.37	0.0411	7.48	1/982	1/7748
SNV	Breast	CAPN8_I670M_1	HLA-B27:02	MRLETLFKLF	1	0.5912	0.0182	2.53	0.1016	7.48	1/982	1/7748
SNV	Breast	CDH5_D270H_6	HLA-A02:01	FVVPEHTRV	0.9663	0.5585	0.365	52.04	0.3075	15.94	1/982	1/7748
SNV	Breast	CDH5_D270H_6	HLA-C03:04	FVVPEHTRV	0.9767	0.9914	0.3653	43.27	0.1906	15.94	1/982	1/7748
SNV	Breast	CDH5_D270H_6	HLA-C02:02	FVVPEHTRV	0.644	0.9794	0.4148	24.88	0.0567	15.94	1/982	1/7748
SNV	Breast	CHAMP1_D17H_6	HLA-B27:02	ARLECHHCSF	0.9999	0.8363	0.0425	41.29	0.3122	25.08	1/982	1/7748
SNV	Breast	CHD2_L709F_11	HLA-B27:02	RRVKKDVEKSF	1	0.5786	0.0106	8.24	0.1902	21.3	1/982	1/7748
SNV	Breast	COA1_D77N_4	HLA-A02:01	KLINRENFV	0.9955	0.6158	0.347	11.12	0.1672	10.66	1/982	1/7748
SNV	Breast	CPSF3_H97D_4	HLA-C03:04	FMTDATKAI	0.9552	0.9821	0.2437	51.68	0.2052	52.95	1/982	1/7748
SNV	Breast	DDX1_G699R_7	HLA-B27:02	KRAAGGRSY	0.9985	0.5613	0.1698	4.49	0.1503	68.05	1/982	1/7748
SNV	Breast	DENND2A_S634L_7	HLA-A02:01	FTSETFLFV	0.9961	0.6426	0.0191	67.39	0.3408	3.82	1/982	1/7748
SNV	Breast	DENND2A_S634L_7	HLA-C02:02	FTSETFLFV	0.6309	0.9926	0.0916	227.28	0.2869	3.82	1/982	1/7748
SNV	Breast	DICER1_Q108E_4	HLA-C02:02	QVAEQVSAV	0.9441	0.9407	1.198	497.36	0.4697	15.26	1/982	1/7748
SNV	Breast	DPP4_S498L_7	HLA-A02:01	RVLEDNLAL	0.9729	0.675	0.6989	69.79	0.3453	4.45	1/982	1/7748
SNV	Breast	DPP4_S498L_7	HLA-C03:04	RVLEDNLAL	0.9941	0.9907	0.1441	5.75	0.0552	4.45	1/982	1/7748
SNV	Breast	DPP4_S498L_7	HLA-C02:02	RVLEDNLAL	0.9562	0.9803	0.3356	54.32	0.1115	4.45	1/982	1/7748
SNV	Breast	EBF2_L402V_10	HLA-B27:02	KRAADIAEAVY	0.9999	0.5194	0.0739	63	0.3516	1.23	1/982	1/7748
SNV	Breast	EBF2_L402V_9	HLA-C03:04	RAADIAEAV	0.9865	0.9927	0.089	6.25	0.0584	1.23	1/982	1/7748
SNV	Breast	EBF2_L402V_9	HLA-C02:02	RAADIAEAV	0.963	0.9899	0.0535	63.11	0.124	1.23	1/982	1/7748
SNV	Breast	EBF2_L402V_9	HLA-C02:02	RAADIAEAVY	0.9386	0.9731	0.2039	265.15	0.316	1.23	1/982	1/7748
SNV	Breast	FAT2_S867F_1	HLA-A02:01	FLHPLTGEL	0.9884	0.7658	0.0844	7.94	0.1398	1.82	1/982	1/7748
SNV	Breast	FAT2_S867F_1	HLA-A02:01	FLHPLTGELV	0.9904	0.7405	0.3735	172.81	0.4823	1.82	1/982	1/7748
SNV	Breast	FAT2_S867F_1	HLA-C03:04	FLHPLTGEL	0.9953	0.9936	0.0241	17.16	0.1254	1.82	1/982	1/7748
SNV	Breast	FAT2_S867F_1	HLA-C02:02	FLHPLTGEL	0.954	0.9941	0.0511	34.26	0.0766	1.82	1/982	1/7748
SNV	Breast	GLE1_S46F_3	HLA-A02:01	KLFSYSGWV	0.993	0.5318	0.0288	66.57	0.3392	69.42	1/982	1/7748
SNV	Breast	GLE1_S46F_3	HLA-A02:01	KLFSYSGWVV	0.9972	0.5767	0.0556	256.06	0.547	69.42	1/982	1/7748
SNV	Breast	GOLGA3_F1209L_4	HLA-B27:02	RRHLKAASL	0.9999	0.643	0.2131	239.98	0.4913	29.68	1/982	1/7748
SNV	Breast	GPR39_I95M_9	HLA-C03:04	MPMEFYSIM	0.9971	0.9926	1.997	441.98	0.4827	9.52	1/982	1/7748
SNV	Breast	HES1_R46Q_1	HLA-B27:02	QRARINESL	0.9995	0.5721	0.3196	26.64	0.2742	166.97	1/982	1/7748
SNV	Breast	HIST2H3D_E98Q_7	HLA-A02:01	ALQEASQAYL	0.9881	0.5887	0.8095	418.31	0.6361	1.75	1/982	1/7748
SNV	Breast	IGHG2_V184I_6	HLA-B27:02	FRVVSILTV	0.9999	0.6676	0.2781	42.12	0.3141	689.73	1/982	1/7748
SNV	Breast	IGHG2_V184I_5	HLA-C02:02	RVVSILTVV	0.8796	0.9169	0.774	273.68	0.3229	689.73	1/982	1/7748
SNV	Breast	IRF7_S425F_4	HLA-B27:02	RRGFPRYTI	0.9997	0.5938	0.27	58.44	0.3446	50.32	1/982	1/7748
SNV	Breast	IRF7_S425F_4	HLA-B27:02	RRGFPRYTIY	0.9998	0.5926	0.1446	4.53	0.1511	50.32	1/982	1/7748
SNV	Breast	KLHDC7A_D683N_4	HLA-B27:02	YRFNLNRSL	0.9999	0.5111	0.0619	1.4	0.0447	2.89	1/982	1/7748
SNV	Breast	KLHL13_F119L_9	HLA-A02:01	MMASASDYL	0.9647	0.557	0.0556	60.99	0.3279	4.43	1/982	2/7748
SNV	Breast	KLHL13_F119L_6	HLA-C03:04	SASDYLKAM	0.9995	0.9768	0.0165	7.07	0.0636	4.43	1/982	1/7748
SNV	Breast	KLHL13_F119L_6	HLA-C02:02	SASDYLKAM	0.7335	0.8753	0.008	148.14	0.2174	4.43	1/982	2/7748
SNV	Breast	KLHL29_K822N_6	HLA-A02:01	VVLDGNIYA	0.9639	0.5187	0.5313	149.25	0.4572	1.92	1/982	1/7748
SNV	Breast	KLHL29_K822N_5	HLA-A02:01	VLDGNIYAT	0.9837	0.5886	0.4794	16.41	0.2006	1.92	1/982	1/7748
SNV	Breast	L3MBTL3_H473Y_7	HLA-B27:02	FKVKPPYGF	0.9915	0.561	0.5909	62.78	0.3513	8.63	1/982	1/7748
SNV	Breast	L3MBTL3_H473Y_1	HLA-C03:04	YGFQKKMKL	0.9854	0.9821	0.4309	64.04	0.2279	8.63	1/982	1/7748
SNV	Breast	LARP4_S470L_9	HLA-C03:04	RPHPSTAEL	0.9562	0.9667	0.547	90.17	0.2637	19.31	1/982	1/7748
SNV	Breast	LGALS1_E87Q_8	HLA-A02:01	FQPGSVAQV	0.9941	0.7801	0.2609	58.55	0.3227	1196.59	1/982	1/7748
SNV	Breast	LRRN2_E479K_6	HLA-B27:02	YRVYPKGTL	0.9995	0.8236	0.2131	30.45	0.2854	9.55	1/982	1/7748
SNV	Breast	LRRN2_E479K_5	HLA-C03:04	RVYPKGTLEL	0.9843	0.9904	0.7512	56.11	0.2139	9.55	1/982	1/7748
SNV	Breast	LRRN2_E479K_5	HLA-C02:02	RVYPKGTLEL	0.9983	0.977	0.6916	50.89	0.1061	9.55	1/982	1/7748
SNV	Breast	LSP1_S204Y_8	HLA-A02:01	KLIDRTEYL	0.9979	0.6021	0.054	1.14	0.0099	117.47	1/982	1/7748
SNV	Breast	LSP1_S204Y_8	HLA-C03:04	KLIDRTEYL	0.9284	0.9783	0.585	310.33	0.4254	117.47	1/982	1/7748
SNV	Breast	LSP1_S204Y_8	HLA-C02:02	KLIDRTEYL	0.8511	0.9261	0.613	14.08	0.0284	117.47	1/982	1/7748
SNV	Breast	MLH3_F50L_7	HLA-C02:02	RVNMETLQV	0.8593	0.9837	1.9591	267.2	0.3177	8.72	1/982	1/7748
SNV	Breast	MLPH_A473V_9	HLA-B40:01	LEDRVAVTV	0.9936	0.5611	0.1486	9.17	0.2313	130.36	1/982	1/7748
SNV	Breast	MLPH_A473V_11	HLA-B40:01	SELEDRVAVTV	0.9998	0.6278	0.1853	263.97	0.5679	130.36	1/982	1/7748
SNV	Breast	MLPH_A473V_6	HLA-C02:02	RVAVTVSEV	0.9524	0.9537	1.198	434.54	0.4309	130.36	1/982	1/7748
SNV	Breast	MLX_S258L_2	HLA-A02:01	ILVASFQEL	0.9889	0.6772	0.3137	27.24	0.2436	32.3	1/982	1/7748
SNV	Breast	MRAP_M68I_10	HLA-A02:01	YMSWSASPQI	0.9865	0.6944	0.3119	241.79	0.5377	2.72	1/982	1/7748
SNV	Breast	MRAP_M68I_9	HLA-C03:04	MSWSASPQI	0.9777	0.9832	0.3596	313.5	0.4271	2.72	1/982	1/7748
SNV	Breast	MTERF2_E229Q_5	HLA-C03:04	TAIKQTLEF	0.9994	0.9895	0.1061	42.65	0.1896	17.87	1/982	1/7748
SNV	Breast	MTERF2_E229Q_5	HLA-C02:02	TAIKQTLEF	0.9503	0.9879	0.0385	239.13	0.2952	17.87	1/982	1/7748
SNV	Breast	MZB1_R163L_2	HLA-A02:01	GLGALEALL	0.9552	0.6424	0.672	111.81	0.4078	45.1	1/982	1/7748
SNV	Breast	OAS3_S158F_7	HLA-A02:01	VLGQAGFGV	0.9864	0.6754	0.1588	31.21	0.2559	43.31	1/982	1/7748
SNV	Breast	P2RY10_S224F_1	HLA-C03:04	FLRQPPMAF	0.9658	0.9941	0.348	27.66	0.1609	9.64	1/982	1/7748
SNV	Breast	P2RY10_S224F_1	HLA-C02:02	FLRQPPMAF	0.6596	0.9861	0.1083	21.29	0.0497	9.64	1/982	1/7748
SNV	Breast	P4HA3_Q160H_8	HLA-A02:01	GLARGVFHRV	0.9595	0.6465	0.5409	52.98	0.3098	11.54	1/982	1/7748
SNV	Breast	PHF1_S14L_1	HLA-A02:01	LLWDPASPA	0.995	0.6517	0.1229	65.56	0.3372	54.78	1/982	1/7748
SNV	Breast	PHF1_S14L_7	HLA-B27:02	SRSGASLLW	0.9951	0.614	0.1774	1.26	0.0309	54.78	1/982	1/7748
SNV	Breast	PLA2R1_G1307R_2	HLA-B27:02	FRSSVQMVW	0.9985	0.6392	0.1186	1.3	0.0342	4.05	1/982	1/7748
SNV	Breast	PLA2R1_G1307R_2	HLA-B27:02	FRSSVQMVWL	0.9988	0.6158	0.4574	231.3	0.4871	4.05	1/982	1/7748
SNV	Breast	PLA2R1_G1307R_4	HLA-C03:04	FAFRSSVQM	0.9998	0.9883	0.0029	1.91	0.0154	4.05	1/982	1/7748
SNV	Breast	PLA2R1_G1307R_4	HLA-C02:02	FAFRSSVQM	0.9536	0.9857	0.0106	42.46	0.0936	4.05	1/982	1/7748
SNV	Breast	PTER_D268H_6	HLA-C03:04	YQLGPHIDM	0.9748	0.9889	0.9034	223.48	0.3765	14.29	1/982	1/7748
SNV	Breast	RBM39_S469L_2	HLA-A02:01	NLAQGNVYV	0.9775	0.7747	0.1588	2.81	0.0607	81.52	1/982	1/7748
SNV	Breast	RLF_S160L_5	HLA-A02:01	SLQELHDAL	0.9713	0.7551	0.5089	48.78	0.2994	13.98	1/982	1/7748
SNV	Breast	SLC7A7_I447F_5	HLA-C03:04	SLIGFAIAL	0.9828	0.9905	0.2326	71.28	0.2391	23.61	1/982	1/7748
SNV	Breast	SLMAP_Q163E_5	HLA-A02:01	SMYSEELFQL	0.9965	0.7212	0.1286	12.41	0.176	15.37	1/982	1/7748
SNV	Breast	STIL_G804R_1	HLA-B40:01	REDQEPDSQM	0.973	0.6796	0.1795	141.91	0.496	8.95	1/982	1/7748
SNV	Breast	TCP11L2_D63H_6	HLA-C03:04	RVVTFHEVM	0.9891	0.9932	1.0263	365.84	0.4521	3.1	1/982	1/7748
SNV	Breast	TCTN3_R149T_6	HLA-C03:04	SPFPSTVFM	0.9593	0.9958	0.5931	53.83	0.2095	76.13	1/982	1/7748
SNV	Breast	TMEM56_P36A_7	HLA-C03:04	FSAKVSAGF	0.9853	0.9825	0.1919	241.75	0.3873	2.36	1/982	1/7748
SNV	Breast	TMEM56_P36A_4	HLA-C03:04	KVSAGFNSL	0.9899	0.9927	0.0668	40.42	0.1857	2.36	1/982	1/7748
SNV	Breast	TMEM56_P36A_4	HLA-C02:02	KVSAGFNSL	0.9333	0.9887	0.1623	193.26	0.2605	2.36	1/982	1/7748
SNV	Breast	TSSC1_D369N_4	HLA-C03:04	LSYNGRLVI	0.9943	0.9536	0.4831	23.85	0.152	21.33	1/982	1/7748
SNV	Breast	TSSC1_D369N_4	HLA-C02:02	LSYNGRLVI	0.8686	0.8608	0.5754	270.31	0.3202	21.33	1/982	1/7748
SNV	Breast	UBXN7_L429V_3	HLA-C03:04	ITVPEQAKL	0.9995	0.9852	0.1475	137.3	0.3098	16.01	1/982	1/7748
SNV	Breast	UBXN7_L429V_3	HLA-C02:02	ITVPEQAKL	0.5076	0.9766	0.1536	390.65	0.4004	16.01	1/982	1/7748
SNV	Breast	UFSP2_E135K_1	HLA-B27:02	KRESGGHHY	0.9248	0.7567	0.1575	25.7	0.2712	30.89	1/982	1/7748
SNV	Breast	UFSP2_I134M_9	HLA-C03:04	SLAAVTPIM	0.9142	0.9831	1.459	292.12	0.4156	30.89	1/982	1/7748
SNV	Breast	UFSP2_I134M_9	HLA-C02:02	SLAAVTPIM	0.7259	0.9724	0.8431	241.51	0.2968	30.89	1/982	1/7748
SNV	Breast	VANGL1_D228N_7	HLA-C03:04	YAVSLVNAL	0.9998	0.9937	0.0009	1.31	0.0061	11.56	1/982	1/7748
SNV	Breast	VANGL1_D228N_7	HLA-C02:02	YAVSLVNAL	0.9486	0.9879	0.0034	33.84	0.0758	11.56	1/982	1/7748
SNV	Breast	VPS13C_S1059L_9	HLA-C03:04	SVAKEVQIL	0.9995	0.9875	0.3955	283.82	0.411	17	1/982	1/7748
SNV	Breast	YEATS2_K41N_5	HLA-C03:04	AAVQNIETI	0.998	0.994	0.0912	21.41	0.1438	14.14	1/982	1/7748
SNV	Breast	ZC3H14_M585I_6	HLA-C03:04	FSNAEISEL	0.9999	0.9904	0.0278	5.32	0.0522	9.31	1/982	1/7748
SNV	Breast	ZC3H14_M585I_6	HLA-C02:02	FSNAEISEL	0.9444	0.9844	0.0916	23.08	0.0534	9.31	1/982	1/7748
SNV	Breast	ZNF263_E403K_7	HLA-B27:02	QRIHAAKRL	0.9997	0.556	0.3121	256.39	0.4986	18.74	1/982	1/7748
SNV	Breast	ZNF431_I225V_3	HLA-B27:02	KRVHIRENSY	0.9999	0.6082	0.0276	9.39	0.1973	6.4	1/982	1/7748
SNV	Breast	RPA1_R604Q_6	HLA-C07:01	YREYGQRLV	0.7515	0.5679	0.5206	172.06	0.1103	52.54	1/982	1/7748
SNV	Breast	RPA1_R604Q_6	HLA-C07:01	YREYGQRLVM	0.9979	0.6386	0.6029	83.78	0.0802	52.54	1/982	1/7748
SNV	Breast	SGCE_P388S_7	HLA-B35:01	WPLSTLSVF	0.9994	0.7792	0.0168	4.14	0.0792	48.97	1/982	1/7748
SNV	Breast	BIRC6_S3048F_7	HLA-A02:01	TLSKKAFTV	0.9829	0.6243	0.0645	20.31	0.2187	19.84	1/982	1/7748
SNV	Breast	DEPDC5_R1468Q_5	HLA-C07:01	TYWDQMHLF	0.7367	0.6757	0.4556	323.52	0.1434	9.98	1/982	1/7748
SNV	Breast	DEPDC5_R1468Q_4	HLA-C04:01	YWDQMHLF	0.9998	0.8366	0.0471	11.98	0.0244	9.98	1/982	1/7748
SNV	Breast	DEPDC5_R1468Q_5	HLA-C04:01	TYWDQMHLF	0.8869	0.9438	0.5563	98.27	0.0736	9.98	1/982	1/7748
SNV	Breast	NDUFB10_D32N_1	HLA-A02:01	NLIVDRPVTL	0.8932	0.7039	1.4521	302.74	0.5741	262.57	1/982	1/7748
SNV	Breast	NLGN4X_G194R_2	HLA-C07:01	YRNVIVITI	0.9994	0.6018	0.0592	6.71	0.0123	1.61	1/982	1/7748
SNV	Breast	PALD1_E815K_4	HLA-A02:01	GIYKILNEL	0.9674	0.6139	0.672	55.84	0.3166	18.22	1/982	1/7748
SNV	Breast	ZNF232_S15R_2	HLA-C07:01	SRWYEPSAEL	0.999	0.7919	0.2414	449.91	0.1672	11.69	1/982	1/7748
SNV	Breast	ZNF232_S15R_1	HLA-C04:01	RWYEPSAEL	0.7757	0.7718	0.8075	182.7	0.0953	11.69	1/982	1/7748
SNV	Breast	ZNF407_D1424N_4	HLA-A02:01	FLANGLSGLNV	0.9985	0.6992	0.7751	26.5	0.2412	5.25	1/982	1/7748
SNV	Breast	B4GALT5_Y264H_2	HLA-C07:02	MHLLPYTEF	0.9091	0.978	0.4923	216.52	0.2792	109.78	1/982	1/7748
SNV	Breast	B4GALT5_Y264H_1	HLA-C07:02	HLLPYTEFF	0.5971	0.9873	1.1223	421.55	0.3722	109.78	1/982	1/7748
SNV	Breast	CHRNA10_V329F_2	HLA-A33:01	SFRPVPAWAR	0.9813	0.8892	0.1604	27.11	0.0288	1.52	1/982	1/7748
SNV	Breast	HSD11B1_K36R_1	HLA-A03:01	RVIVTGASK	0.9989	0.7119	0.0579	3.55	0.0348	1.73	1/982	1/7748
SNV	Breast	HSD11B1_K36R_2	HLA-A03:01	KRVIVTGASK	0.7564	0.6994	1.3371	77.89	0.2585	1.73	1/982	1/7748
SNV	Breast	KCND1_T372M_8	HLA-C03:04	YTIVTMTML	0.9923	0.973	0.384	68.56	0.235	1.04	1/982	1/7748
SNV	Breast	KCNH3_P801Q_6	HLA-B07:02	GPSAPQRAL	0.9995	0.693	0.0271	1.24	0.0106	1.68	1/982	1/7748
SNV	Breast	KCNH3_P801Q_3	HLA-B07:02	APQRALEGL	0.9989	0.6514	0.038	19.89	0.1549	1.68	1/982	1/7748
SNV	Breast	KCNH3_P801Q_7	HLA-B07:02	AGPSAPQRAL	0.9473	0.736	1.9684	2.43	0.0412	1.68	1/982	1/7748
SNV	Breast	KCNH3_P801Q_1	HLA-C07:02	QRALEGLRL	0.965	0.9439	0.5371	357.25	0.3478	1.68	1/982	1/7748
SNV	Breast	PIGN_S703Y_2	HLA-C07:02	SYPVLFQRL	0.5358	0.8565	0.6911	111.69	0.2055	23.01	1/982	1/7748
SNV	Breast	UBR4_M3641I_6	HLA-C03:04	VASNLIIEF	0.999	0.9925	0.2095	36.06	0.1773	25.1	1/982	1/7748
SNV	Breast	UFSP2_D18H_8	HLA-C07:02	FRIRGGLHL	0.8978	0.9489	0.0085	3.65	0.0123	12.6	1/982	1/7748
SNV	Breast	UFSP2_D18H_6	HLA-C07:02	IRGGLHLAF	0.9646	0.9374	0.0414	30.24	0.0983	12.6	1/982	1/7748
SNV	Breast	ACADS_V373L_6	HLA-C16:01	GGMGYLTEM	0.8573	0.9805	1.405	54	0.2997	70.77	1/982	1/7748
SNV	Breast	ATAD2B_S340F_4	HLA-B58:01	TTSFDEERF	0.7778	0.9693	0.5526	195.56	0.4882	2.02	1/982	1/7748
SNV	Breast	ATAD2B_S340F_4	HLA-B15:16	TTSFDEERF	0.8549	0.7985	0.5118	151.72	0.5985	2.02	1/982	1/7748
SNV	Breast	C2orf69_D338N_4	HLA-B58:01	QVRNPMRSW	0.9565	0.967	0.341	24.88	0.224	7.85	1/982	1/7748
SNV	Breast	C2orf69_D338N_5	HLA-B58:01	YQVRNPMRSW	0.8961	0.9402	0.7763	175.51	0.4727	7.85	1/982	1/7748
SNV	Breast	C2orf69_D338N_4	HLA-B15:16	QVRNPMRSW	0.979	0.8323	0.5857	87.15	0.4666	7.85	1/982	1/7748
SNV	Breast	C2orf69_D338N_3	HLA-C07:01	VRNPMRSWI	0.9832	0.741	0.3565	349.27	0.1493	7.85	1/982	1/7748
SNV	Breast	DSN1_L220V_3	HLA-B58:01	FSVERQTW	0.999	0.8656	0.4411	42.04	0.2798	29.63	1/982	1/7748
SNV	Breast	DSN1_L220V_4	HLA-B58:01	KFSVERQTW	0.8473	0.9343	0.5323	257	0.5331	29.63	1/982	1/7748
SNV	Breast	DSN1_L220V_6	HLA-B58:01	ITKFSVERQTW	0.9994	0.8729	0.2943	152.66	0.4527	29.63	1/982	1/7748
SNV	Breast	F8_T1370N_5	HLA-B15:16	LTPSNLTQI	0.7931	0.5888	1.0168	456.67	1.0123	5.75	1/982	1/7748
SNV	Breast	PIK3CA_E542K_8	HLA-B15:16	STRDPLSKI	0.9606	0.5214	0.7726	37.16	0.2746	5.45	1/982	3/7748
SNV	Breast	PLCB1_F326L_9	HLA-B58:01	MSQPLSHYL	0.9898	0.7931	0.0949	36.43	0.2617	1.38	1/982	1/7748
SNV	Breast	PLCB1_F326L_9	HLA-B15:16	MSQPLSHYL	0.9933	0.5745	0.0745	10.38	0.0972	1.38	1/982	1/7748
SNV	Breast	PLCB1_F326L_9	HLA-C16:01	MSQPLSHYL	0.9897	0.9754	0.028	6.34	0.0634	1.38	1/982	1/7748
SNV	Breast	TRPC6_E735Q_2	HLA-B58:01	IQDDADVEW	0.7729	0.9747	0.4319	50.1	0.302	1.22	1/982	1/7748
SNV	Breast	VPS51_R573W_3	HLA-B15:16	TAWRLLTHY	0.9802	0.9638	0.1843	194.7	0.687	59.31	1/982	1/7748
SNV	Breast	CDKL2_H493Y_8	HLA-B35:01	LPQMEHQY	0.9768	0.7865	0.5769	314.01	0.4304	1.16	4/982	4/7748
SNV	Breast	CDKL2_H493Y_8	HLA-B35:01	LPQMEHQY	0.9768	0.7865	0.5769	314.01	0.4304	1.16	4/982	4/7748
SNV	Breast	CDKL2_H493Y_8	HLA-B35:01	LPQMEHQY	0.9768	0.7865	0.5769	314.01	0.4304	1.16	4/982	4/7748
SNV	Breast	CDKL2_H493Y_8	HLA-B35:01	LPQMEHQY	0.9768	0.7865	0.5769	314.01	0.4304	1.16	4/982	4/7748
SNV	Breast	GK_V475L_4	HLA-B40:01	AEGLGVWSL	0.9972	0.7965	0.0134	1.27	0.0347	11.68	1/982	1/7748
SNV	Breast	GK_V475L_9	HLA-C03:04	MAAGAAEGL	0.9992	0.9953	0.0691	30.39	0.1666	11.68	1/982	1/7748
SNV	Breast	HSPG2_V3446M_9	HLA-B40:01	GQLPPGHSM	0.9531	0.8305	0.6699	63.48	0.4103	15.81	1/982	1/7748
SNV	Breast	HSPG2_V3446M_9	HLA-C03:04	GQLPPGHSM	0.948	0.9927	0.9426	486.59	0.4982	15.81	1/982	1/7748
SNV	Breast	NUP155_H1242R_7	HLA-C03:04	SSSDRMRAL	0.9985	0.978	0.0836	92.39	0.2663	14.61	1/982	1/7748
SNV	Breast	NUP155_H1242R_1	HLA-C03:04	RALSLKIVL	0.9988	0.9889	0.4546	38.1	0.1813	14.61	1/982	1/7748
SNV	Breast	TLR7_V222L_4	HLA-B35:01	VPTLLPSTL	0.9812	0.6441	0.1574	45.17	0.2364	5.81	1/982	1/7748
SNV	Breast	ZNF469_L1939F_1	HLA-B35:01	FPAVAGHQL	0.9974	0.7489	0.0421	1.44	0.0212	2.85	1/982	1/7748
SNV	Breast	ZNF469_L1939F_10	HLA-B35:01	SPGGVQVTTF	0.9473	0.5342	0.1835	320.01	0.4327	2.85	1/982	1/7748
SNV	Breast	ZNF469_L1939F_1	HLA-C03:04	FPAVAGHQL	0.9957	0.972	0.5072	64.96	0.2294	2.85	1/982	1/7748
SNV	Breast	INTS2_G1159E_8	HLA-B57:01	QIKEKPSEW	0.9911	0.9936	0.3478	226.16	0.3836	5.6	1/982	1/7748
SNV	Breast	PAPD7_L401M_7	HLA-A25:01	EVFTGGMSSY	0.9917	0.9474	0.0104	2.88	0.0036	25.7	1/982	1/7748
SNV	Breast	PAPD7_L401M_7	HLA-B35:01	EVFTGGMSSY	0.9789	0.9032	0.6899	206.6	0.3818	25.7	1/982	1/7748
SNV	Breast	ZNF608_L1094Q_2	HLA-B35:01	SQMATSPAY	0.9547	0.6504	0.2255	77.7	0.2837	1.67	1/982	1/7748
SNV	Breast	DGCR8_P484A_1	HLA-C05:01	AANQKLITL	0.9998	0.9553	0.2409	498.92	0.4042	20.96	1/982	1/7748
SNV	Breast	DGCR8_P484A_1	HLA-C03:04	AANQKLITL	0.9998	0.9809	0.0576	3.26	0.0339	20.96	1/982	1/7748
SNV	Breast	DGKH_D112H_6	HLA-C05:01	EVDLSHASV	0.9999	0.9881	0.2979	362.8	0.3628	2.94	1/982	1/7748
SNV	Breast	DNASE2B_L17P_4	HLA-C03:04	FALPFLGLF	0.9973	0.9913	0.0561	176.64	0.3443	1.52	1/982	1/7748
SNV	Breast	WDFY3_L1515V_5	HLA-C03:04	APYEVHLSL	0.9925	0.9891	0.86	10.28	0.0843	13.79	1/982	1/7748
SNV	Breast	WDFY3_L1515V_6	HLA-C03:04	HAPYEVHLSL	0.9996	0.9825	0.7675	263.8	0.3993	13.79	1/982	1/7748
SNV	Breast	ZDHHC1_G66A_5	HLA-C03:04	FAVIAFGIL	0.9985	0.991	0.1739	201.32	0.3622	14.09	1/982	1/7748
SNV	Breast	ZDHHC1_G66A_2	HLA-C03:04	IAFGILVPL	0.9994	0.9926	0.0084	7.06	0.0635	14.09	1/982	1/7748
SNV	Breast	ZFHX4_A1439V_8	HLA-C03:04	RSFRTFQVL	0.9881	0.9939	0.348	384.93	0.4603	2.51	1/982	1/7748
SNV	Breast	BEX4_Q106R_9	HLA-A31:01	QMRHYMRFR	0.9752	0.5041	0.0106	66.53	0.1699	146.99	1/982	1/7748
SNV	Breast	MAN1C1_R354C_6	HLA-A31:01	KVRNICKVLR	0.9946	0.5985	0.141	19.51	0.0831	9.72	1/982	1/7748
SNV	Breast	PDIK1L_S18G_4	HLA-C07:02	GRGGYGVVY	0.8373	0.945	0.3186	392.5	0.3617	15.62	1/982	1/7748
SNV	Breast	CHTF18_L792M_4	HLA-C03:03	LASMVGTML	0.9989	0.9868	0.1756	16.23	0.1199	22.03	1/982	1/7748
SNV	Breast	CHTF18_L792M_4	HLA-C03:04	LASMVGTML	0.9989	0.9868	0.222	16.23	0.1199	22.03	1/982	1/7748
SNV	Breast	DHCR7_A41V_3	HLA-A02:01	SLVSVIFLL	0.9719	0.5966	0.0136	5.58	0.1122	74.46	1/982	1/7748
SNV	Breast	DHCR7_A41V_9	HLA-B40:01	WEVDWFSLV	0.966	0.7902	0.1686	171.4	0.5176	74.46	1/982	1/7748
SNV	Breast	FBXO45_M236I_4	HLA-A02:01	ILDIEDKTL	0.9153	0.6762	1.1233	359.14	0.6025	10.98	1/982	1/7748
SNV	Breast	ATXN2L_P415L_10	HLA-B27:06	SRMSPKAQRL	0.9999	0.6953	0.1048	46.06	0.2193	86.83	1/982	1/7748
SNV	Breast	ATXN2L_P415L_3	HLA-B27:06	QRLLRGAKTL	0.9997	0.5908	0.2641	342.78	0.369	86.83	1/982	1/7748
SNV	Breast	ATXN2L_P415L_9	HLA-C07:02	RMSPKAQRL	0.9515	0.9617	0.5371	316.49	0.3299	86.83	1/982	1/7748
SNV	Breast	B4GALNT3_R693H_7	HLA-B27:06	GRYQLQHIV	0.9996	0.7522	0.0901	2.12	0.0563	3.5	1/982	1/7748
SNV	Breast	B4GALNT3_R693H_7	HLA-C07:02	GRYQLQHIV	0.8338	0.9027	0.3259	292.6	0.3184	3.5	1/982	1/7748
SNV	Breast	DAAM2_F13L_9	HLA-B27:06	KRSHHGLGL	0.9994	0.9331	0.0045	4.1	0.0905	1.8	1/982	1/7748
SNV	Breast	DAAM2_F13L_9	HLA-C07:02	KRSHHGLGL	0.7919	0.9777	0.0862	96.09	0.1903	1.8	1/982	1/7748
SNV	Breast	FHOD3_L918R_2	HLA-B27:06	FRWSKLEPI	0.9998	0.9367	0.0089	72.15	0.2466	6.63	1/982	1/7748
SNV	Breast	FHOD3_L918R_2	HLA-C07:02	FRWSKLEPI	0.9242	0.9885	0.072	388.71	0.3603	6.63	1/982	1/7748
SNV	Breast	IGSF3_P1048L_2	HLA-C07:02	SLWEGRLRF	0.7497	0.9753	0.972	166.02	0.2482	42.43	1/982	1/7748
SNV	Breast	KIAA0141_V373L_4	HLA-B27:06	QRALKYLWL	0.9992	0.6432	0.2301	107.84	0.2717	21.25	1/982	1/7748
SNV	Breast	LRRC41_I169M_9	HLA-B27:06	SRHVRQLTM	0.9997	0.5838	0.0113	9.59	0.1309	44.43	1/982	1/7748
SNV	Breast	LRRC41_I169M_9	HLA-C07:02	SRHVRQLTM	0.9805	0.8022	0.0077	8.16	0.0385	44.43	1/982	1/7748
SNV	Breast	NMRK1_D184H_4	HLA-C07:02	VYEHLIQEL	0.9451	0.9623	0.0899	236.16	0.2894	28.93	1/982	1/7748
SNV	Breast	PLA2G6_S258L_7	HLA-C07:02	NGYPIHLAM	0.7457	0.7626	0.7472	159.9	0.2441	10.23	1/982	1/7748
SNV	Breast	STRA6_P649S_7	HLA-C01:02	YTLLHNSTL	0.624	0.9306	0.0739	349.13	0.0346	4.26	1/982	1/7748
SNV	Breast	TOR3A_E127K_10	HLA-A11:01	RISNNFTGLK	0.9989	0.5021	0.2117	71.03	0.2679	97.02	1/982	1/7748
SNV	Breast	TP53_I195T_1	HLA-B27:06	TRVEGNLRV	0.9988	0.8901	0.2213	21.37	0.1741	105.09	1/982	1/7748
SNV	Breast	VPS35_L583V_3	HLA-B27:06	LRVFLQGAL	0.999	0.9138	0.1114	39.93	0.2106	45.26	1/982	1/7748
SNV	Breast	ANXA8L1_P176Q_5	HLA-C07:02	SFVDQALAL	0.653	0.977	0.0926	18.65	0.0743	1.68	1/982	1/7748
SNV	Breast	C2orf16_P467S_8	HLA-B07:02	SPGTTPGSL	0.9991	0.5206	0.0234	2.38	0.04	1.17	1/982	1/7748
SNV	Breast	C2orf16_P467S_9	HLA-B07:02	KSPGTTPGSL	0.9228	0.5497	1.7469	416.09	0.3858	1.17	1/982	1/7748
SNV	Breast	COPA_Y370F_9	HLA-C07:02	KFPVFNMSF	0.7413	0.9366	0.2811	93.08	0.1872	382.51	1/982	1/7748
SNV	Breast	DDX24_D652H_3	HLA-A02:03	GLHIPKVQHV	0.9982	0.7604	0.7366	2.18	0.0817	72.95	1/982	1/7748
SNV	Breast	FBXL17_K538M_2	HLA-A02:03	TMLRNLSSL	0.9707	0.6774	0.279	48.64	0.6126	9.67	1/982	1/7748
SNV	Breast	FOXP1_D441E_5	HLA-C07:02	RRYSEKYNV	0.8173	0.9746	0.4666	142.73	0.2319	21.08	1/982	1/7748
SNV	Breast	GPR173_R286S_1	HLA-A02:03	SMFYAITLL	0.9658	0.5511	0.0626	9.72	0.2865	1.83	1/982	1/7748
SNV	Breast	GTF2IRD2B_E846A_6	HLA-A02:03	KLYESALTL	0.9962	0.8235	0.2226	1.6	0.0434	1.63	1/982	1/7748
SNV	Breast	GTF2IRD2B_E846A_6	HLA-C07:02	KLYESALTL	0.6298	0.9696	0.4923	96.25	0.1905	1.63	1/982	1/7748
SNV	Breast	GTF2IRD2B_E846A_6	HLA-C08:01	KLYESALTL	0.5782	0.9928	0.42	48.24	0.0544	1.63	1/982	1/7748
SNV	Breast	HIST1H3D_D78E_8	HLA-B15:02	LVREIAQEF	0.9958	0.9782	0.1022	14.6	0.0423	3.17	1/982	1/7748
SNV	Breast	IL7R_M164V_4	HLA-B15:02	KVLVHDVAY	0.976	0.9149	0.0927	138.28	0.1498	9.9	1/982	1/7748
SNV	Breast	KLK5_Q205H_3	HLA-A02:03	VLHCLNISV	0.9989	0.8028	0.0145	59.91	0.6628	3.04	1/982	1/7748
SNV	Breast	NFATC2IP_P301L_6	HLA-A02:03	HLGVSLSRI	0.9642	0.767	0.6286	91.94	0.7822	29.48	1/982	1/7748
SNV	Breast	NFATC2IP_P301L_10	HLA-A02:03	HMATHLGVSL	0.9905	0.6849	0.4725	166.03	0.9514	29.48	1/982	1/7748
SNV	Breast	NFATC2IP_P301L_9	HLA-C08:01	MATHLGVSL	0.9934	0.9953	0.0671	311.32	0.1539	29.48	1/982	1/7748
SNV	Breast	RYR1_V1207M_6	HLA-A02:03	NLGQDMSSL	0.7829	0.7363	0.7258	213.17	1.0303	3.22	1/982	1/7748
SNV	Breast	XPO1_F444L_1	HLA-A02:03	LMKDTDSINL	0.9929	0.5236	1.0762	471.94	1.3328	74.58	1/982	1/7748
SNV	Breast	COPS3_K281R_4	HLA-B15:02	LVNRHSETF	0.9849	0.9118	0.1945	453.3	0.2575	50.33	1/982	1/7748
SNV	Breast	DAP3_P319H_5	HLA-B15:02	SLFKHRKAY	0.8221	0.6737	0.0594	4.15	0.0107	208.39	1/982	1/7748
SNV	Breast	DNHD1_R1168C_9	HLA-A24:02	RYWEARQLCLL	0.999	0.6189	0.5633	487.81	0.6928	1.03	1/982	1/7748
SNV	Breast	DNHD1_R1168C_8	HLA-C04:01	YWEARQLCL	0.9899	0.7928	0.123	100.37	0.0741	1.03	1/982	1/7748
SNV	Breast	TANC2_D553Y_9	HLA-B15:02	NEAEFHKPY	0.6614	0.9211	0.6144	451.29	0.2571	18.46	1/982	1/7748
SNV	Breast	TANC2_D553Y_1	HLA-C04:01	YYGDTIVSF	0.7231	0.568	0.1496	15.27	0.0318	18.46	1/982	1/7748
SNV	Breast	TANC2_D553Y_1	HLA-C04:01	YYGDTIVSFL	0.998	0.5744	0.3086	29.32	0.0438	18.46	1/982	1/7748
SNV	Breast	NCOA7_G814R_6	HLA-C01:02	STLEHRTSL	0.9362	0.9715	0.0445	373.12	0.037	10.88	1/982	1/7748
SNV	Breast	RARS_A506V_2	HLA-C08:01	YVDLSHNRL	0.9122	0.9346	0.039	12.86	0.0183	76.76	1/982	1/7748
SNV	Breast	RARS_A506V_2	HLA-C01:02	YVDLSHNRL	0.9998	0.9266	0.1318	211.57	0.0176	76.76	1/982	1/7748
SNV	Breast	ADAMTSL3_A1004T_5	HLA-C07:02	NRLITRPAL	0.9039	0.8457	0.2011	167.48	0.2491	6.78	1/982	1/7748
SNV	Breast	ATP2B1_F855L_8	HLA-C07:02	VYDSISKLL	0.9531	0.8638	0.07	90.14	0.1841	63.9	1/982	1/7748
SNV	Breast	C5orf42_H2283Y_3	HLA-B58:01	ASYLNVSQY	0.9773	0.8449	0.1898	23.23	0.2178	7.3	1/982	1/7748
SNV	Breast	C5orf42_H2283Y_10	HLA-B58:01	RAAQTTPASY	0.9694	0.9303	0.7913	70.96	0.3477	7.3	1/982	1/7748
SNV	Breast	MFF_D8V_8	HLA-A11:01	GTSSVTSLGR	0.9964	0.523	0.0902	405.01	0.5225	31.87	1/982	1/7748
SNV	Breast	POFUT1_S215T_6	HLA-C07:02	KYMVWTDEM	0.548	0.9407	0.3121	138	0.2283	69.04	1/982	1/7748
SNV	Breast	RUNX1_G141R_2	HLA-C07:02	SRRGKSFTL	0.8276	0.9731	0.0969	19.02	0.075	93.32	1/982	1/7748
SNV	Breast	CD109_L364V_7	HLA-B58:01	TVLKPSVNF	0.8973	0.9561	0.7536	265.1	0.5384	5	1/982	1/7748
SNV	Breast	CD79B_S44L_1	HLA-C07:02	LRIWQSPRF	0.9057	0.973	0.1481	88.19	0.182	2.86	1/982	1/7748
SNV	Breast	CD79B_S44L_10	HLA-C07:02	YRNPKGSACL	0.9743	0.9584	0.6388	80.02	0.1729	2.86	1/982	1/7748
SNV	Breast	CHERP_L60R_1	HLA-B58:01	RALEQQQLI	0.9931	0.9865	0.2773	16.06	0.1805	20.58	1/982	1/7748
SNV	Breast	DOK5_A267V_7	HLA-B58:01	VPLPRSVYW	0.9046	0.8527	0.2963	102.45	0.3959	2.13	1/982	1/7748
SNV	Breast	DOK5_A267V_8	HLA-B58:01	MVPLPRSVYW	0.9983	0.9271	0.285	74.18	0.3535	2.13	1/982	1/7748
SNV	Breast	DOPEY2_E2222K_6	HLA-B58:01	ISSSDKITM	0.9836	0.6135	0.3137	145.11	0.4454	96.23	1/982	1/7748
SNV	Breast	ECM2_P551L_9	HLA-C07:02	SYNKLYHVL	0.6569	0.8393	0.0365	11.47	0.0545	23.17	1/982	1/7748
SNV	Breast	JADE1_E103K_3	HLA-B58:01	VSKEKSLMF	0.9946	0.9326	0.2047	191.87	0.4855	8.25	1/982	1/7748
SNV	Breast	LAMB1_Q735K_7	HLA-B58:01	SAWETFKRY	0.986	0.7841	0.4344	69.11	0.3442	118.46	1/982	1/7748
SNV	Breast	MED18_T110S_2	HLA-B58:01	ASSENLTDF	0.819	0.8102	0.3217	227.34	0.5118	18.21	1/982	1/7748
SNV	Breast	MED18_T110S_3	HLA-B58:01	IASSENLTDF	0.9469	0.7971	1.0584	252.92	0.5303	18.21	1/982	1/7748
SNV	Breast	MRPS14_R102W_9	HLA-B58:01	TSRPRGVKW	0.9908	0.7778	0.1348	3.8	0.0685	29.11	1/982	1/7748
SNV	Breast	MRPS14_R102W_7	HLA-B58:01	RPRGVKWRW	0.5377	0.9098	0.5182	301.61	0.5608	29.11	1/982	1/7748
SNV	Breast	MRPS14_R102W_10	HLA-B58:01	MTSRPRGVKW	0.998	0.9287	0.1471	2.62	0.0465	29.11	1/982	1/7748
SNV	Breast	MRPS14_R102W_9	HLA-B58:01	TSRPRGVKWRW	0.9971	0.8282	0.4502	347.79	0.5855	29.11	1/982	1/7748
SNV	Breast	RASA1_T325R_2	HLA-C07:02	RRDEQGLIV	0.5884	0.9612	0.512	425.39	0.3736	26.81	1/982	1/7748
SNV	Breast	STYX_M29I_5	HLA-C07:02	MRREIQEIL	0.8299	0.9802	0.1256	57.63	0.1455	40.5	1/982	1/7748
SNV	Breast	TLN1_D1344N_3	HLA-B58:01	VTNSINQLI	0.9923	0.7731	0.2651	48.47	0.2977	206.96	1/982	1/7748
SNV	Breast	TP53_R248W_9	HLA-B58:01	SSCMGGMNW	0.9962	0.9486	0.0334	5.59	0.0962	84.92	2/982	3/7748
SNV	Breast	TP53_R248W_10	HLA-B58:01	NSSCMGGMNW	0.995	0.9087	0.1786	145.56	0.4459	84.92	2/982	3/7748
SNV	Breast	UBA1_M996I_7	HLA-B58:01	LSQGVSILY	0.9873	0.8424	0.1099	33.49	0.2511	366	1/982	1/7748
SNV	Breast	ARHGAP28_C702F_1	HLA-A02:03	FLDPDAYIL	0.9849	0.7081	0.4978	3.99	0.1532	2.95	1/982	1/7748
SNV	Breast	ARHGAP28_C702F_11	HLA-B18:01	YEIGGNIGEHF	0.9997	0.8198	0.1608	164.91	0.1875	2.95	1/982	1/7748
SNV	Breast	C5orf42_V939I_3	HLA-B57:01	RVIQSMARF	0.9977	0.9541	0.3247	4.27	0.0557	13.61	1/982	1/7748
SNV	Breast	COL12A1_S395L_2	HLA-A02:03	LLADTEYQI	0.9962	0.7325	0.0705	3	0.1194	278.23	1/982	1/7748
SNV	Breast	COL12A1_S395L_2	HLA-A02:03	LLADTEYQISV	0.9998	0.838	1.6609	64.92	0.6821	278.23	1/982	1/7748
SNV	Breast	DHX37_P286S_6	HLA-B57:01	KTTQVSQF	0.9994	0.9418	1.4631	106.45	0.2872	16.68	1/982	1/7748
SNV	Breast	DHX37_P286S_6	HLA-B57:01	KTTQVSQFL	0.9576	0.8897	0.4363	38.73	0.2122	16.68	1/982	1/7748
SNV	Breast	DHX37_P286S_6	HLA-B57:01	KTTQVSQFLY	0.9989	0.8783	0.3478	330.43	0.4351	16.68	1/982	1/7748
SNV	Breast	EIF3L_R216C_3	HLA-A02:03	FLCSNPKIWNV	0.9989	0.8451	1.3366	213.04	1.0301	113.52	1/982	1/7748
SNV	Breast	IGLV1-40_R75W_9	HLA-B57:01	LLIYGNSNW	0.8525	0.907	0.387	181.49	0.3515	178.28	1/982	1/7748
SNV	Breast	LGR6_A252V_8	HLA-A02:03	KLQEFPVVI	0.9945	0.7926	0.3379	3.29	0.1304	2.53	1/982	1/7748
SNV	Breast	LGR6_A252V_6	HLA-B18:01	QEFPVVIRTL	0.656	0.9542	0.2066	356.33	0.2379	2.53	1/982	1/7748
SNV	Breast	ME3_E361K_3	HLA-B57:01	KAKATRKIW	0.996	0.962	0.0602	1.65	0.0173	3.43	1/982	1/7748
SNV	Breast	MSH6_Q698E_1	HLA-B18:01	EELLSMANF	0.9963	0.9148	0.0432	3.63	0.0249	25.52	1/982	1/7748
SNV	Breast	MYO5A_E1121K_4	HLA-B57:01	SSNKSEYIF	0.9959	0.8827	0.2651	29.25	0.1906	19.4	1/982	1/7748
SNV	Breast	N4BP1_D705N_7	HLA-B57:01	RIASHDNRF	0.8434	0.9716	1.817	477.94	0.4837	43.42	1/982	1/7748
SNV	Breast	PAPD5_R504K_4	HLA-B57:01	ATYKDWISKQW	1	0.9567	0.0379	8.07	0.0941	12.65	1/982	1/7748
SNV	Breast	PAPD5_R504K_7	HLA-B18:01	DEVATYKDW	0.9865	0.8426	0.2747	251.58	0.214	12.65	1/982	1/7748
SNV	Breast	PHF14_K307N_5	HLA-B57:01	LILENSQNW	0.9897	0.9605	0.0808	14.65	0.1319	31.44	1/982	1/7748
SNV	Breast	PROS1_S103L_9	HLA-A02:03	GLFTAARQL	0.954	0.61	0.6484	22.79	0.4342	19.71	1/982	1/7748
SNV	Breast	PROS1_S103L_5	HLA-B57:01	AARQLTNAY	0.8273	0.9837	1.393	480.83	0.4845	19.71	1/982	1/7748
SNV	Breast	RTN2_T354A_7	HLA-A02:03	LLYWKDART	0.8588	0.6495	1.4981	217.44	1.0374	6.3	1/982	1/7748
SNV	Breast	TLN2_T1262I_1	HLA-B18:01	IEFKQQLAAF	0.9895	0.8774	0.1131	159.85	0.1857	6.32	1/982	1/7748
SNV	Breast	TP53_Y205N_3	HLA-B18:01	VENLDDRNTF	0.9797	0.9084	0.3703	184.33	0.1939	78.1	1/982	1/7748
SNV	Breast	UBAP1_P114L_3	HLA-A02:03	TMLPPINPI	0.9681	0.7403	0.0791	6.94	0.2299	44.99	1/982	1/7748
SNV	Breast	UBAP1_P114L_2	HLA-A02:03	MLPPINPIL	0.9933	0.8332	0.279	6.33	0.2163	44.99	1/982	1/7748
SNV	Breast	UBAP1_P114L_2	HLA-A02:03	MLPPINPILA	0.9922	0.8587	1.0826	121.33	0.8612	44.99	1/982	1/7748
SNV	Breast	UBAP1_P114L_9	HLA-B57:01	KTHSTATML	0.975	0.9549	0.3734	76.98	0.264	44.99	1/982	1/7748
SNV	Breast	ZDHHC13_R125Q_2	HLA-A02:03	IQQGHLPMV	0.9874	0.7779	0.5386	31	0.5033	6.69	1/982	1/7748
SNV	Breast	ZNF611_E340Q_7	HLA-B57:01	KAIDTGQNPY	0.9956	0.9854	0.9541	133.48	0.3067	9.7	1/982	1/7748
SNV	Breast	CLK1_Q271E_4	HLA-C03:03	MAYEICKSV	0.9918	0.989	0.099	390.95	0.4628	27.18	1/982	1/7748
SNV	Breast	CLK1_Q271E_4	HLA-C03:04	MAYEICKSV	0.9918	0.989	0.1116	390.95	0.4628	27.18	1/982	1/7748
SNV	Breast	DET1_F489L_1	HLA-A24:02	LYARDSGLLKF	0.9999	0.5597	0.2505	52.13	0.3706	12.15	1/982	1/7748
SNV	Breast	EGFLAM_Q407E_1	HLA-C03:03	EAFQITLEF	0.993	0.9856	0.4514	210.42	0.3683	6.05	1/982	1/7748
SNV	Breast	EGFLAM_Q407E_1	HLA-C03:04	EAFQITLEF	0.993	0.9856	0.5775	210.42	0.3683	6.05	1/982	1/7748
SNV	Breast	ERBB3_F94L_9	HLA-C03:03	YVLVAMNEL	0.9934	0.9801	0.2228	12.52	0.0966	93.92	1/982	1/7748
SNV	Breast	ERBB3_F94L_6	HLA-C03:03	VAMNELSTL	0.9998	0.9844	0.0226	1.66	0.0116	93.92	1/982	1/7748
SNV	Breast	ERBB3_F94L_9	HLA-C03:04	YVLVAMNEL	0.9934	0.9801	0.3901	12.52	0.0966	93.92	1/982	1/7748
SNV	Breast	ERBB3_F94L_6	HLA-C03:04	VAMNELSTL	0.9998	0.9844	0.033	1.66	0.0116	93.92	1/982	1/7748
SNV	Breast	GLYR1_E453K_5	HLA-C03:03	ATIAKGLTL	0.9992	0.9899	0.0631	7.07	0.0636	71.42	1/982	1/7748
SNV	Breast	GLYR1_E453K_6	HLA-C03:03	MATIAKGLTL	0.9995	0.9882	0.5685	321.6	0.4312	71.42	1/982	1/7748
SNV	Breast	GLYR1_E453K_5	HLA-C03:04	ATIAKGLTL	0.9992	0.9899	0.0645	7.07	0.0636	71.42	1/982	1/7748
SNV	Breast	GLYR1_E453K_6	HLA-C03:04	MATIAKGLTL	0.9995	0.9882	0.5709	321.6	0.4312	71.42	1/982	1/7748
SNV	Breast	MYCBP2_E1214K_7	HLA-C03:03	YSAHSVKAI	0.9817	0.9883	0.0359	43.39	0.1908	9.68	1/982	1/7748
SNV	Breast	MYCBP2_E1214K_7	HLA-C03:04	YSAHSVKAI	0.9817	0.9883	0.0374	43.39	0.1908	9.68	1/982	1/7748
SNV	Breast	NAB2_P37L_6	HLA-C03:03	RAMALLRTL	0.9965	0.992	0.1386	4.42	0.044	42.38	1/982	1/7748
SNV	Breast	NAB2_P37L_6	HLA-C03:04	RAMALLRTL	0.9965	0.992	0.1349	4.42	0.044	42.38	1/982	1/7748
SNV	Breast	NLRP2_D601N_5	HLA-C03:03	STVTNLQEL	0.9992	0.993	0.0616	69.17	0.236	26.1	1/982	1/7748
SNV	Breast	NLRP2_D601N_5	HLA-C03:04	STVTNLQEL	0.9992	0.993	0.0752	69.17	0.236	26.1	1/982	1/7748
SNV	Breast	NOP9_E387Q_1	HLA-B40:01	QELSPVLEAV	0.9683	0.7673	0.1893	84.79	0.4411	40.67	1/982	1/7748
SNV	Breast	NOP9_E387Q_7	HLA-C03:03	LLSPVFQEL	0.999	0.9928	0.1474	133.82	0.3063	40.67	1/982	1/7748
SNV	Breast	NOP9_E387Q_7	HLA-C03:04	LLSPVFQEL	0.999	0.9928	0.1218	133.82	0.3063	40.67	1/982	1/7748
SNV	Breast	PCDH18_H1076Y_2	HLA-A24:02	TYSSVQPSSKW	0.9996	0.625	0.5029	199.06	0.5487	7.31	1/982	1/7748
SNV	Breast	PERP_L99V_3	HLA-C03:03	FAVCGPQML	0.9997	0.9675	0.0114	5.76	0.0553	241.36	1/982	1/7748
SNV	Breast	PERP_L99V_3	HLA-C03:04	FAVCGPQML	0.9997	0.9675	0.0125	5.76	0.0553	241.36	1/982	1/7748
SNV	Breast	PRDM10_A1080V_9	HLA-C03:03	FVITDSGVV	0.8841	0.9613	0.963	255.02	0.3946	6.59	1/982	1/7748
SNV	Breast	PRDM10_A1080V_9	HLA-C03:04	FVITDSGVV	0.8841	0.9613	1.1576	255.02	0.3946	6.59	1/982	1/7748
SNV	Breast	PTK2B_E561Q_5	HLA-C03:03	VASPQCVKL	0.9996	0.9703	0.038	252.73	0.3934	8.34	1/982	1/7748
SNV	Breast	PTK2B_E561Q_5	HLA-C03:04	VASPQCVKL	0.9996	0.9703	0.0494	252.73	0.3934	8.34	1/982	1/7748
SNV	Breast	SARS_D378Y_8	HLA-C03:03	HAASKKLYL	0.998	0.9897	0.1038	25.6	0.1563	154.11	1/982	1/7748
SNV	Breast	SARS_D378Y_8	HLA-C03:04	HAASKKLYL	0.998	0.9897	0.1116	25.6	0.1563	154.11	1/982	1/7748
SNV	Breast	SH3PXD2A_E288Q_4	HLA-C03:03	IGFQKGVTV	0.9532	0.9891	0.749	149.8	0.3217	37.44	1/982	1/7748
SNV	Breast	SH3PXD2A_E288Q_4	HLA-C03:04	IGFQKGVTV	0.9532	0.9891	0.7923	149.8	0.3217	37.44	1/982	1/7748
SNV	Breast	TPP2_V475F_9	HLA-C03:03	KANNIDYTF	0.974	0.9888	1.2921	74.02	0.2431	25.58	1/982	1/7748
SNV	Breast	TPP2_V475F_9	HLA-C03:04	KANNIDYTF	0.974	0.9888	1.459	74.02	0.2431	25.58	1/982	1/7748
SNV	Breast	ZBTB16_T91M_6	HLA-C03:03	YAYTAMLQA	0.9047	0.9867	1.1001	113.95	0.2881	1.99	1/982	1/7748
SNV	Breast	ZBTB16_T91M_6	HLA-C03:04	YAYTAMLQA	0.9047	0.9867	1.3775	113.95	0.2881	1.99	1/982	1/7748
SNV	Breast	ZNF84_Q694E_5	HLA-C03:03	KAFSEKSQL	0.9992	0.9819	0.0525	31.36	0.1685	11.35	1/982	1/7748
SNV	Breast	ZNF84_Q694E_5	HLA-C03:04	KAFSEKSQL	0.9992	0.9819	0.0457	31.36	0.1685	11.35	1/982	1/7748
SNV	Breast	ABHD11_G144V_5	HLA-C03:03	HSMGVKTAM	0.9988	0.9838	0.0525	10.87	0.0881	68.59	1/982	1/7748
SNV	Breast	ABHD11_G144V_3	HLA-C03:03	MGVKTAMLL	0.991	0.9755	0.5329	484.47	0.4975	68.59	1/982	1/7748
SNV	Breast	AKAP1_T762M_8	HLA-B55:02	LPTPVEIMV	0.9749	0.6706	0.0559	10.44	0.024	79.76	1/982	1/7748
SNV	Breast	CCDC82_D25Y_8	HLA-B44:03	PEQKSRVYW	0.9611	0.9191	0.499	42.55	0.2124	1.67	1/982	1/7748
SNV	Breast	CPSF1_E1064K_8	HLA-B44:03	FETIERDKRY	0.9843	0.8267	0.2808	105.85	0.2877	41.66	1/982	1/7748
SNV	Breast	EHD2_P319L_7	HLA-A02:01	YLKKEMLSV	0.9921	0.8134	0.1104	3.49	0.0746	16.26	1/982	1/7748
SNV	Breast	KIRREL_R110W_8	HLA-B44:03	TEAALRSW	0.9999	0.9911	0.1475	14.52	0.1422	3.18	1/982	2/7748
SNV	Breast	KIRREL_R110W_1	HLA-C07:01	WRAKLTVLI	0.9899	0.6869	0.2649	346.29	0.1487	3.18	1/982	2/7748
SNV	Breast	PDE4B_I622T_5	HLA-C03:03	FIDYTVHPL	0.9997	0.9858	0.185	339.42	0.4399	1.71	1/982	1/7748
SNV	Breast	RANBP3_H287Q_1	HLA-B55:02	QPSADTPTA	0.8316	0.7086	0.0416	140.43	0.1522	21.75	1/982	1/7748
SNV	Breast	SON_L756F_4	HLA-C03:03	SQMFASSTM	0.9823	0.9828	1.383	290.98	0.415	174.17	1/982	1/7748
SNV	Breast	ZBTB40_A876V_6	HLA-C03:03	MTFTQVSAL	0.9995	0.9853	0.0088	6.17	0.0579	19.58	1/982	1/7748
SNV	Breast	TMEM117_A240V_10	HLA-A02:07	FLPSDEVSRV	0.9883	0.84	0.2047	319.54	0.0894	3.9	1/982	1/7748
SNV	Breast	GON4L_L105P_6	HLA-B13:01	SQGITPPSL	0.5549	0.9603	0.2309	307.97	0.237	21.49	1/982	1/7748
SNV	Breast	IFT88_K81N_6	HLA-C03:04	TGYGSNTSL	0.9974	0.99	0.4014	19.68	0.1368	8.7	1/982	1/7748
SNV	Breast	ROBO1_V1390L_2	HLA-B15:02	SLSSSDGSF	0.7892	0.8318	0.1634	330.57	0.2212	14.59	1/982	1/7748
SNV	Breast	SMG1_A3267D_5	HLA-C03:04	WAGGDNPAL	0.9964	0.9874	0.2975	208.44	0.367	27.16	1/982	1/7748
SNV	Breast	TP53_H193Y_7	HLA-A02:07	GLAPPQYLI	0.9939	0.6177	0.2439	489.21	0.1183	115.59	1/982	1/7748
SNV	Breast	GSE1_P238L_6	HLA-C15:05	MSSLPLLGL	0.9991	0.969	0.1404	120	0.2863	51.2	1/982	1/7748
SNV	Breast	ROBO4_A740P_5	HLA-C15:05	VAPQPPSSI	0.9981	0.9117	0.0486	165.57	0.335	9.49	1/982	1/7748
SNV	Breast	SAA1_E27K_1	HLA-C15:05	KAFDGARDM	0.9933	0.9421	0.1165	132.93	0.2996	20.65	1/982	1/7748
SNV	Breast	SAA1_E27K_1	HLA-C12:02	KAFDGARDM	0.8834	0.9623	0.0315	19.87	0.0537	20.65	1/982	1/7748
SNV	Breast	SAA2_E27K_1	HLA-C15:05	KAFDGARDM	0.9933	0.9421	0.1165	132.93	0.2996	2.02	1/982	1/7748
SNV	Breast	SAA2_E27K_1	HLA-C12:02	KAFDGARDM	0.8834	0.9623	0.0315	19.87	0.0537	2.02	1/982	1/7748
SNV	Breast	TMEM53_V248M_1	HLA-C15:05	MSSAHVSHL	0.9999	0.9429	0.0177	167.46	0.3368	10.62	1/982	1/7748
SNV	Breast	TMEM53_V248M_1	HLA-C12:02	MSSAHVSHL	0.9991	0.9896	0.0086	191.56	0.2724	10.62	1/982	1/7748
SNV	Breast	XRN1_D604E_2	HLA-B15:01	YERDTEFIY	0.9365	0.8943	0.3093	206.95	0.3758	7.45	1/982	1/7748
SNV	Breast	NDUFS3_D234Y_1	HLA-C12:02	YLNSPWEAF	0.9559	0.9839	0.1356	107.51	0.1897	77.7	1/982	1/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:04	ARHGGWTTK	0.9944	0.831	0.2138	189.76	0.3103	16.87	1/982	1/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:04	ARHGGWTTKM	0.9998	0.7277	0.0326	23.88	0.1691	16.87	1/982	1/7748
SNV	Breast	SH3KBP1_R490W_3	HLA-B27:04	GRWPPSQSL	0.9998	0.7461	0.0095	1.13	0.009	13.12	1/982	1/7748
SNV	Breast	SH3KBP1_R490W_3	HLA-B27:04	GRWPPSQSLT	0.9984	0.6944	0.4888	79.54	0.2451	13.12	1/982	1/7748
SNV	Breast	SPIDR_C376Y_7	HLA-A02:03	IIPSGSYPV	0.9807	0.8007	0.279	128.92	0.8782	23.42	1/982	1/7748
SNV	Breast	SPIDR_C376Y_3	HLA-C12:02	GSYPVILNTY	0.9809	0.9657	0.6584	493.18	0.4667	23.42	1/982	1/7748
SNV	Breast	SUPT5H_A146T_6	HLA-A02:03	YMKKYTKSSV	0.9921	0.5192	1.4183	127.25	0.8746	65.22	1/982	1/7748
SNV	Breast	ABCD3_S270F_6	HLA-C07:02	YRYVNFRL	0.9987	0.9007	0.648	73.03	0.1654	28.93	1/982	1/7748
SNV	Breast	ABCD3_S270F_6	HLA-C07:02	YRYVNFRLI	0.9159	0.8746	0.1834	7	0.0331	28.93	1/982	1/7748
SNV	Breast	ATP8B2_T427M_6	HLA-C07:02	IFSDKMGTL	0.5515	0.8661	0.2402	232.2	0.2875	9.38	1/982	1/7748
SNV	Breast	ATP8B2_T427M_6	HLA-C04:01	IFSDKMGTL	0.9793	0.7073	0.1346	485.3	0.1527	9.38	1/982	1/7748
SNV	Breast	C5orf42_R2294T_2	HLA-A30:01	ATKKEVEQK	0.9969	0.8098	0.1555	455.17	0.1656	4.23	1/982	1/7748
SNV	Breast	IER2_S49L_3	HLA-C07:02	YLLAKVEAL	0.5406	0.9803	0.8174	245.47	0.294	51.22	1/982	1/7748
SNV	Breast	ITGA9_E720K_5	HLA-A30:01	KSKYKFSVI	0.9885	0.7833	0.1744	317.19	0.1219	2.08	1/982	1/7748
SNV	Breast	ITGA9_E720K_8	HLA-C07:02	MRSKSKYKF	0.8184	0.8716	0.0676	87.96	0.1817	2.08	1/982	1/7748
SNV	Breast	TP53_R342P_7	HLA-C07:02	ERFEMFPEL	0.9078	0.8879	0.1019	41.84	0.119	99.66	1/982	1/7748
SNV	Breast	TP53_R342P_3	HLA-C07:02	MFPELNEAL	0.7343	0.9529	0.2011	220.26	0.2812	99.66	1/982	1/7748
SNV	Breast	BRCC3_R137H_5	HLA-B15:02	HVDVHTQAM	0.9653	0.7589	0.3713	290.66	0.206	39.73	1/982	1/7748
SNV	Breast	BRCC3_R137H_5	HLA-C03:04	HVDVHTQAM	0.9993	0.9633	0.089	45.92	0.195	39.73	1/982	1/7748
SNV	Breast	BRCC3_R137H_5	HLA-C08:01	HVDVHTQAM	0.9708	0.9843	0.0311	131.76	0.098	39.73	1/982	1/7748
SNV	Breast	DCUN1D2_F154L_9	HLA-B13:01	QELKDTAKL	0.9833	0.8723	0.0876	410.61	0.272	16.55	1/982	1/7748
SNV	Breast	HAUS5_R416W_1	HLA-C03:04	WSPGEVLAL	0.9988	0.9949	0.1404	443.08	0.4831	19.18	1/982	1/7748
SNV	Breast	KIFC2_R149W_7	HLA-A11:01	GTQPAPWVR	0.9851	0.6671	0.633	141.1	0.3603	14.06	1/982	1/7748
SNV	Breast	PSIP1_S382L_9	HLA-B13:01	IEALDELAL	0.97	0.9292	0.1684	275.14	0.2232	19.38	1/982	1/7748
SNV	Breast	XRRA1_L376R_5	HLA-B15:02	ELRYRSLAY	0.9362	0.8843	0.7897	65	0.1052	13.44	1/982	1/7748
SNV	Breast	CEP170_R643Q_4	HLA-C07:02	RRRQTLPQL	0.8063	0.9628	0.1256	82.4	0.1754	7.8	1/982	1/7748
SNV	Breast	NTHL1_S258F_1	HLA-B54:01	FPEETRAAL	0.9735	0.5867	0.1016	38.72	0.059	23.11	1/982	1/7748
SNV	Breast	ZZZ3_Q569K_4	HLA-C07:02	VWDKYTHSL	0.9762	0.9299	0.122	83.83	0.1771	8.67	1/982	1/7748
SNV	Breast	COL1A1_G1382D_7	HLA-C15:05	YMDQQTDNL	0.9782	0.9145	0.1541	113.62	0.2792	4288.18	1/982	1/7748
SNV	Breast	GAS6_K290N_4	HLA-C15:05	SVANSVKSL	0.9978	0.9119	0.6815	464.02	0.5412	90.15	1/982	1/7748
SNV	Breast	HPS1_K64T_8	HLA-C15:05	SSMTMLETL	0.9995	0.9056	0.2689	390.13	0.5009	34.38	1/982	1/7748
SNV	Breast	TLE2_V372I_7	HLA-C15:05	SVPSSYISL	0.9819	0.8892	0.358	491.22	0.5545	16.43	1/982	1/7748
SNV	Breast	VPS41_I397F_4	HLA-C15:05	ILDFGLAYI	0.9356	0.9262	0.5152	101.95	0.2651	35.65	1/982	1/7748
SNV	Breast	NCOR1_A1817T_2	HLA-C15:02	TTADALAAL	0.998	0.9623	0.0571	15.82	0.1231	27.15	1/982	1/7748
SNV	Breast	NCOR1_A1817T_1	HLA-C15:02	TADALAALV	0.9948	0.9629	0.0896	262.54	0.5825	27.15	1/982	1/7748
SNV	Breast	PSMB6_S52F_1	HLA-C07:02	FRTTTGSYI	0.7779	0.9419	0.701	212.02	0.2768	253.41	1/982	1/7748
SNV	Breast	RAPGEF3_G297S_2	HLA-C15:02	HSKGLVTTL	0.9991	0.9518	0.099	74.44	0.3403	3.15	1/982	1/7748
SNV	Breast	AGT_V187L_9	HLA-C15:05	KVLSALQAL	0.9987	0.9052	0.5933	138.76	0.3064	7.68	1/982	1/7748
SNV	Breast	AHCY_E108Q_6	HLA-B58:01	KGETDQEYLW	0.9984	0.9189	0.4763	62.17	0.3303	278.81	1/982	1/7748
SNV	Breast	GBE1_R618T_4	HLA-A29:01	AFETAGLLF	0.9536	0.6797	0.7476	108.52	0.3287	21.24	1/982	1/7748
SNV	Breast	GBE1_R618T_5	HLA-B58:01	IAFETAGLLF	0.9947	0.924	0.3381	113.31	0.41	21.24	1/982	1/7748
SNV	Breast	GBE1_R618T_5	HLA-C15:05	IAFETAGLL	0.9941	0.9424	0.0813	58.28	0.1977	21.24	1/982	1/7748
SNV	Breast	MADD_L1167M_9	HLA-B58:01	ISADSGVSM	0.8898	0.9279	0.6228	373.17	0.5977	18.82	1/982	1/7748
SNV	Breast	MADD_L1167M_9	HLA-C15:05	ISADSGVSM	0.9968	0.9164	0.0716	25.66	0.111	18.82	1/982	1/7748
SNV	Breast	MFSD3_G214R_5	HLA-B58:01	LAVPRTVW	0.9991	0.9791	0.6626	190.53	0.4845	59.35	1/982	1/7748
SNV	Breast	MFSD3_G214R_6	HLA-B58:01	VLAVPRTVW	0.9804	0.9746	0.2104	18.45	0.1963	59.35	1/982	1/7748
SNV	Breast	PTPRF_T831M_1	HLA-B58:01	MAMNTALLQW	0.9995	0.9882	0.0345	3.24	0.0606	335.41	1/982	1/7748
SNV	Breast	PTPRF_T831M_3	HLA-C15:05	STMAMNTAL	0.9977	0.8371	0.2689	21.13	0.0953	335.41	1/982	1/7748
SNV	Breast	RASL12_R103H_6	HLA-B58:01	YSVDSHQSF	0.9923	0.7721	0.0559	4.5	0.0791	246.97	1/982	1/7748
SNV	Breast	RASL12_R103H_6	HLA-C15:05	YSVDSHQSF	0.983	0.7962	0.1071	279.7	0.4271	246.97	1/982	1/7748
SNV	Breast	RFC4_G68A_1	HLA-B58:01	AADLPNLLF	0.8231	0.7833	0.2651	75.84	0.3564	59.03	1/982	1/7748
SNV	Breast	RFC4_G68A_1	HLA-C15:05	AADLPNLLF	0.9031	0.822	0.0735	50.91	0.1785	59.03	1/982	1/7748
SNV	Breast	RIC8B_G188V_2	HLA-C15:05	QVLPLLTQI	0.9975	0.9696	0.9646	163.91	0.3333	8.36	1/982	1/7748
SNV	Breast	SLC10A3_Q424H_3	HLA-C15:05	GVHNSLLAL	0.9851	0.8844	0.7559	365.83	0.4866	81.22	1/982	1/7748
SNV	Breast	TBC1D8B_P173H_3	HLA-A29:01	RVHCQGWLY	0.9977	0.5471	0.0211	9.44	0.1379	1.47	1/982	1/7748
SNV	Breast	UBE2Q1_S249L_9	HLA-C15:05	YLNGAVSGL	0.9001	0.9765	1.0356	180.75	0.3491	138.43	1/982	1/7748
SNV	Breast	B3GALT4_L73R_6	HLA-C01:02	GAPPFRLIL	0.6328	0.9523	0.0158	343.85	0.034	16	1/982	1/7748
SNV	Breast	C2orf81_V304M_5	HLA-B15:02	IASGMLVSY	0.9987	0.8814	0.0336	49.4	0.0903	4.38	1/982	1/7748
SNV	Breast	CHI3L1_D207G_3	HLA-A33:03	TYGFHGAWR	0.9874	0.7845	0.3291	367.87	0.2142	32.93	1/982	1/7748
SNV	Breast	TUBB4B_F265L_8	HLA-B15:02	VPFPRLHLF	0.9577	0.7809	0.175	404.35	0.2451	624.09	1/982	1/7748
SNV	Breast	VPS54_K712E_6	HLA-C08:01	SLSDGEIAL	0.6728	0.9532	0.2404	263.56	0.1408	19.62	1/982	1/7748
SNV	Breast	FAHD2A_V227I_1	HLA-C01:02	IADPHNLKI	0.9995	0.8611	0.0047	338.76	0.0335	8.59	1/982	1/7748
SNV	Breast	TWISTNB_N136Y_7	HLA-A02:07	KLMGIVYKV	0.9985	0.5138	0.001	4.28	0.0088	18.82	1/982	1/7748
SNV	Breast	EZR_S249F_1	HLA-C07:02	FFNDKKFVI	0.8229	0.8539	0.512	120.59	0.2138	472.91	1/982	1/7748
SNV	Breast	HJURP_H531Y_9	HLA-B15:02	SLPKTNPTY	0.9403	0.8935	0.0844	29.99	0.0656	8.92	1/982	1/7748
SNV	Breast	HOMEZ_P263L_2	HLA-A02:03	KLPPIALIA	0.9931	0.6473	0.7204	55.57	0.6447	23.95	1/982	1/7748
SNV	Breast	PEX6_S767R_3	HLA-A02:03	FLRVKGPEL	0.9907	0.676	0.5743	6.27	0.2149	26.66	1/982	1/7748
SNV	Breast	PEX6_S767R_3	HLA-A02:03	FLRVKGPELI	0.9628	0.5538	1.1646	96.25	0.796	26.66	1/982	1/7748
SNV	Breast	SNTB1_E307K_8	HLA-A02:03	LLTRVIAKV	0.9978	0.7252	0.0367	4.79	0.1767	4.48	1/982	1/7748
SNV	Breast	TENM2_S1979F_9	HLA-C07:02	RHSMSTHTF	0.7916	0.8522	0.172	363.99	0.3506	2.71	1/982	1/7748
SNV	Breast	ZNF585A_S449A_5	HLA-A02:03	KLFTAKSQL	0.9827	0.6859	0.2835	22.67	0.4329	4.72	1/982	1/7748
SNV	Breast	CCT8_Q13L_7	HLA-C14:02	KAPGFALML	0.8554	0.9546	0.7153	114.67	0.5375	198.84	1/982	1/7748
SNV	Breast	CCT8_Q13L_7	HLA-C01:02	KAPGFALML	0.7842	0.9109	0.0053	298.11	0.0278	198.84	1/982	1/7748
SNV	Breast	FERMT2_E627Q_1	HLA-C14:02	QFADEVRLSF	0.9827	0.982	0.3839	75.18	0.4325	24.66	1/982	1/7748
SNV	Breast	PRPF8_I1809V_1	HLA-C14:02	VFNPRTGQL	0.779	0.9634	0.0434	2.29	0.0286	61.79	1/982	1/7748
SNV	Breast	PRPF8_I1809V_1	HLA-C14:02	VFNPRTGQLF	0.9783	0.9636	0.1538	42.33	0.3252	61.79	1/982	1/7748
SNV	Breast	DOPEY1_E2110D_7	HLA-C07:02	RRAWKKDAF	0.8156	0.837	0.2351	210.73	0.2761	4.51	1/982	1/7748
SNV	Breast	TNC_G844V_3	HLA-B07:02	VPVDRTTIDL	0.9599	0.5948	0.3221	33.16	0.1822	18.67	1/982	1/7748
SNV	Breast	TP53_C141R_3	HLA-B58:01	KTRPVQLW	0.9986	0.9648	0.2963	4.41	0.0777	61.13	1/982	1/7748
SNV	Breast	TP53_C141R_5	HLA-B58:01	LAKTRPVQLW	0.9935	0.9783	0.3636	21.62	0.2113	61.13	1/982	1/7748
SNV	Breast	TRMT2A_A132V_6	HLA-B58:01	RVLHGVLW	0.997	0.9917	0.58	27.2	0.232	19.06	1/982	1/7748
SNV	Breast	TRMT2A_A132V_9	HLA-B58:01	KALRVLHGVLW	0.9983	0.9821	0.2572	43.2	0.2832	19.06	1/982	1/7748
SNV	Breast	TTC31_R388C_8	HLA-B58:01	KALMGLQCF	0.9963	0.9685	0.121	196.91	0.4892	20.46	1/982	1/7748
SNV	Breast	AASS_P434L_8	HLA-C14:02	ILSDATQLL	0.9532	0.9498	0.4474	89.65	0.4757	3.7	1/982	1/7748
SNV	Breast	CYP2S1_H408Q_5	HLA-C14:02	NIFKQPEEF	0.7062	0.9462	0.3785	350.3	0.9224	3.41	1/982	1/7748
SNV	Breast	HCFC1_E2022G_7	HLA-B07:02	RPMSSPGM	0.9996	0.56	0.4091	15.09	0.1406	25.36	1/982	1/7748
SNV	Breast	HDC_R358L_5	HLA-C07:02	SRRFLSVKL	0.8374	0.9303	0.1631	236.3	0.2895	1.98	1/982	1/7748
SNV	Breast	HID1_D545H_4	HLA-C07:02	YQFHGNSNL	0.9074	0.962	0.07	414.36	0.3697	517.23	1/982	1/7748
SNV	Breast	HID1_D545H_4	HLA-C14:02	YQFHGNSNL	0.8386	0.9806	0.1911	27.14	0.251	517.23	1/982	1/7748
SNV	Breast	MS4A4A_V99M_9	HLA-C14:02	TYGSNPISMY	0.509	0.9532	0.494	474.55	1.0557	11.44	1/982	1/7748
SNV	Breast	PHC2_R699W_3	HLA-C07:02	RRWASKASL	0.8921	0.9636	0.0926	48.86	0.1307	60.44	1/982	2/7748
SNV	Breast	RBM19_F876L_4	HLA-C07:02	HRGLGFVDF	0.7905	0.975	0.2811	319.15	0.3312	21.53	1/982	1/7748
SNV	Breast	TCF7L2_H311Y_5	HLA-B51:01	TGIPYPAIV	0.934	0.7757	0.2081	411.31	0.409	16.29	1/982	1/7748
SNV	Breast	TCF7L2_H311Y_1	HLA-B51:01	YPAIVTPTV	0.9973	0.5318	0.0004	1.39	0.0043	16.29	1/982	1/7748
SNV	Breast	TCF7L2_H311Y_3	HLA-B51:01	IPYPAIVTPTV	0.9995	0.6061	0.2799	3.13	0.0196	16.29	1/982	1/7748
SNV	Breast	TMEM246_R167H_8	HLA-C07:02	KYVPVANHY	0.5848	0.8335	0.024	43.3	0.1213	2.54	1/982	1/7748
SNV	Breast	AQR_V503M_2	HLA-A02:06	VMFGGWARM	0.9581	0.8722	0.4996	344.86	0.5067	13.29	1/982	1/7748
SNV	Breast	AQR_V503M_3	HLA-A11:02	GVMFGGWAR	0.9961	0.6625	0.2745	25.87	0.1617	13.29	1/982	1/7748
SNV	Breast	ARHGEF16_L666P_8	HLA-B15:02	LQQEDGWPY	0.8697	0.9421	0.0707	249.49	0.1911	1.18	1/982	1/7748
SNV	Breast	ATG4D_V301G_4	HLA-A02:06	KSVGILVPV	0.9824	0.564	0.1104	61.37	0.2627	9.96	1/982	1/7748
SNV	Breast	ATRN_L635P_9	HLA-A02:06	YVFGGFNSPL	0.9904	0.6734	0.1525	64.58	0.2679	8.52	1/982	1/7748
SNV	Breast	ATR_M76L_9	HLA-A02:06	LLDFIQHIL	0.9837	0.6747	0.2865	264.74	0.4606	17.21	1/982	1/7748
SNV	Breast	ATR_M76L_10	HLA-A02:06	MLLDFIQHIL	0.9943	0.6809	0.0906	139.24	0.3611	17.21	1/982	1/7748
SNV	Breast	ATR_M76L_2	HLA-B15:02	ILKSSPLMF	0.9833	0.8767	0.1461	262.1	0.1954	17.21	1/982	1/7748
SNV	Breast	ATR_M76L_9	HLA-C08:01	LLDFIQHIL	0.9059	0.9837	0.0566	237.23	0.1316	17.21	1/982	1/7748
SNV	Breast	CCDC82_R388G_5	HLA-A02:06	FVQPGLESL	0.967	0.7371	0.1384	3.41	0.0453	13.22	1/982	1/7748
SNV	Breast	CCDC82_R388G_5	HLA-A02:06	FVQPGLESLV	0.9587	0.6519	0.4941	39.37	0.2206	13.22	1/982	1/7748
SNV	Breast	CCDC82_R388G_5	HLA-C08:01	FVQPGLESL	0.9823	0.9931	0.0085	16.72	0.0221	13.22	1/982	1/7748
SNV	Breast	CPNE5_R544G_4	HLA-A02:06	RLAGDVLAEI	0.9971	0.6594	0.3391	200.82	0.413	4.41	1/982	1/7748
SNV	Breast	CYB561_C210S_2	HLA-A11:02	ASFGGAVLY	0.9901	0.7743	0.3535	2.72	0.028	49.72	1/982	1/7748
SNV	Breast	CYB561_C210S_2	HLA-B15:02	ASFGGAVLY	0.9976	0.9878	0.099	36.04	0.0738	49.72	1/982	1/7748
SNV	Breast	CYB561_C210S_3	HLA-C08:01	LASFGGAVL	0.8856	0.9983	0.1261	247.4	0.1353	49.72	1/982	1/7748
SNV	Breast	CYFIP2_R659G_6	HLA-B15:02	LTMGRGIQF	0.9935	0.8449	0.1495	135.59	0.1486	7.8	1/982	1/7748
SNV	Breast	FAM160B1_Q164E_4	HLA-A02:06	KLKEDPYLV	0.9944	0.8786	0.187	12.64	0.1353	9.38	1/982	1/7748
SNV	Breast	IDH3B_V59L_2	HLA-A02:06	GLGPELMHA	0.9681	0.7284	0.4236	30.52	0.1975	24.56	1/982	1/7748
SNV	Breast	IDH3B_V59L_2	HLA-A02:06	GLGPELMHAV	0.9921	0.8287	0.605	105.09	0.3234	24.56	1/982	1/7748
SNV	Breast	IGHV1-69_L102M_6	HLA-C08:01	TAYMEMSSL	0.9623	0.983	1.0638	443.31	0.1773	1.36	1/982	1/7748
SNV	Breast	LAMP1_H162N_1	HLA-A02:06	NMNNVTVTL	0.9295	0.6541	0.8715	235.45	0.4404	128	1/982	1/7748
SNV	Breast	LAMP1_H162N_1	HLA-C08:01	NMNNVTVTL	0.8862	0.9495	0.4562	339.14	0.1594	128	1/982	1/7748
SNV	Breast	MYH9_T1030I_3	HLA-A02:06	MIIDLEERL	0.994	0.7675	0.6391	21.21	0.1681	233.33	1/982	1/7748
SNV	Breast	PTCH2_V589L_2	HLA-A02:06	TLPVGIAHL	0.9471	0.7511	0.398	274.04	0.4665	1.88	1/982	1/7748
SNV	Breast	PTCH2_V589L_3	HLA-A11:02	GTLPVGIAH	0.9649	0.6585	0.746	286.98	0.465	1.88	1/982	1/7748
SNV	Breast	RNF219_D129V_5	HLA-A02:06	KTILVPLTL	0.8912	0.7453	1.1703	399.29	0.5343	24.73	1/982	1/7748
SNV	Breast	RNF219_D129V_4	HLA-A02:06	TILVPLTLV	0.9545	0.7601	0.4919	205.07	0.4166	24.73	1/982	1/7748
SNV	Breast	RNF219_D129V_5	HLA-C08:01	KTILVPLTL	0.8416	0.9932	0.3579	197.84	0.1194	24.73	1/982	1/7748
SNV	Breast	RUFY1_R208Q_2	HLA-B48:01	GQAWLYLAL	0.9855	0.7692	0.0815	88.29	0.0369	14.12	1/982	1/7748
SNV	Breast	SYNGAP1_E666D_4	HLA-A02:06	FLYDISNL	0.995	0.5754	1.6949	291.04	0.4769	7.01	1/982	1/7748
SNV	Breast	SYNGAP1_E666D_4	HLA-A02:06	FLYDISNLDTL	0.9986	0.7143	0.7235	93.14	0.3073	7.01	1/982	1/7748
SNV	Breast	COG1_H192D_3	HLA-C04:01	ILDESKMLL	0.9999	0.8253	0.0121	10.3	0.0223	41.29	1/982	1/7748
SNV	Breast	PAM_H778R_1	HLA-C04:01	RFDMPHDIV	0.9975	0.8943	0.0385	15.12	0.0316	13.01	1/982	1/7748
SNV	Breast	UGT2B28_E112Q_5	HLA-C04:01	YFSQQQEIL	0.8286	0.8173	0.0939	276.62	0.1163	12.96	1/982	1/7748
SNV	Breast	ABCC4_V1207M_9	HLA-C03:04	IIDEATANM	0.9988	0.988	0.1218	132.93	0.3054	2.62	1/982	1/7748
SNV	Breast	ABCC4_V1207M_9	HLA-C08:01	IIDEATANM	0.8667	0.9762	0.028	30.63	0.04	2.62	1/982	1/7748
SNV	Breast	ABCC4_V1207M_2	HLA-C08:01	NMDPRTDEL	0.9569	0.9638	0.0566	299.55	0.1515	2.62	1/982	1/7748
SNV	Breast	COPB1_R567H_8	HLA-B15:02	TLTKIALHY	0.9466	0.8364	0.1136	248.13	0.1906	130.72	1/982	1/7748
SNV	Breast	GLA_R118C_7	HLA-A24:02	RFPHGICQL	0.9923	0.6035	0.1545	128.81	0.4882	57.5	1/982	1/7748
SNV	Breast	MCM7_A128T_4	HLA-A24:02	QYPTELMRRF	0.9945	0.5056	0.2621	2.97	0.0978	63.01	1/982	1/7748
SNV	Breast	PDE4D_R431W_5	HLA-A24:02	IFQEWDLLKTF	0.9997	0.6144	0.6815	145.43	0.5051	1.1	1/982	1/7748
SNV	Breast	PDE4D_R431W_3	HLA-B13:01	QEWDLLKTF	0.9942	0.9133	0.0179	9.09	0.0195	1.1	1/982	1/7748
SNV	Breast	SPAG17_A34V_7	HLA-B13:01	NQNDWQVSI	0.8043	0.9644	0.1684	20	0.0374	1.99	1/982	1/7748
SNV	Breast	SPAG17_A34V_5	HLA-B13:01	NDWQVSIAF	0.6876	0.9422	0.1344	354.31	0.2542	1.99	1/982	1/7748
SNV	Breast	AP4B1_D61H_7	HLA-C15:05	KASATVHIV	0.9995	0.8626	0.1231	167.96	0.3373	15.18	1/982	1/7748
SNV	Breast	ARFGEF1_L276V_9	HLA-C15:05	HTNDVDKSV	0.9975	0.8378	0.3811	462.92	0.5407	52.63	1/982	1/7748
SNV	Breast	ATAD2_R1082T_2	HLA-C15:05	LTDTAYAII	0.9612	0.8934	0.1467	99.19	0.2616	138.82	1/982	1/7748
SNV	Breast	CIITA_T981M_1	HLA-C15:05	MAFSSLQHL	0.9997	0.8429	0.0084	77.98	0.2322	17.52	1/982	1/7748
SNV	Breast	COL12A1_S395L_2	HLA-A02:07	LLADTEYQI	0.997	0.6496	0.0735	144.27	0.069	86.95	1/982	1/7748
SNV	Breast	COQ6_L345M_9	HLA-C15:05	RVDAKSRVM	0.9804	0.8344	0.1895	25.22	0.1093	5.82	1/982	1/7748
SNV	Breast	DNAAF3_E491Q_7	HLA-C15:05	ASNPALQGL	0.9995	0.928	0.0791	25.31	0.1097	1.89	1/982	1/7748
SNV	Breast	ELL_S319W_3	HLA-C15:05	SAWPPQKRL	0.9987	0.9065	0.1231	27.87	0.1188	11.52	1/982	1/7748
SNV	Breast	ERMAP_R234Q_3	HLA-C15:05	RAQLHFVAV	0.9993	0.948	0.1099	120.96	0.2873	8.6	1/982	1/7748
SNV	Breast	EXOC4_Q415E_8	HLA-C15:05	TASEPSAEL	0.9988	0.9063	0.0259	78.94	0.2337	19.17	1/982	1/7748
SNV	Breast	EXOC4_Q415E_9	HLA-C15:05	RTASEPSAEL	0.9987	0.8803	0.8174	448.73	0.5334	19.17	1/982	1/7748
SNV	Breast	GALK2_E49K_7	HLA-C15:05	RVNIIGKHI	0.9826	0.8181	1.0694	321.01	0.4576	7.82	1/982	1/7748
SNV	Breast	GARNL3_E273Q_8	HLA-C15:05	YTVYQGHQI	0.9957	0.8846	0.2031	54.28	0.1876	2.48	1/982	1/7748
SNV	Breast	GARNL3_E273Q_7	HLA-C15:05	TVYQGHQIM	0.9897	0.8958	0.8884	283.95	0.4304	2.48	1/982	1/7748
SNV	Breast	HERC6_S621G_4	HLA-C15:05	VIFGDFPFI	0.9858	0.8753	1.595	422.33	0.5194	59.71	1/982	1/7748
SNV	Breast	HIVEP1_E388Q_7	HLA-C15:05	VVNQSVQQM	0.9856	0.8991	0.325	409.01	0.5119	13.2	1/982	1/7748
SNV	Breast	IRAK1_I662V_9	HLA-C15:05	SSEPPQIIV	0.9917	0.8014	0.0968	58.65	0.1985	100.92	1/982	1/7748
SNV	Breast	IRAK1_I662V_2	HLA-C15:05	IVNPARQKM	0.9722	0.9038	0.3811	62.39	0.2061	100.92	1/982	1/7748
SNV	Breast	ITGAM_I967M_5	HLA-C15:05	RSLPMSLVF	0.9552	0.9734	1.2186	81.42	0.2373	67	1/982	1/7748
SNV	Breast	LRIG1_L148F_3	HLA-C15:05	LSFNNITEV	0.9997	0.9457	0.0621	25.82	0.1116	44.33	1/982	1/7748
SNV	Breast	MRPL2_M34I_9	HLA-C15:05	SLFPAAQMI	0.9345	0.901	0.5933	162.66	0.3321	34.96	1/982	1/7748
SNV	Breast	NBPF11_L289V_7	HLA-C15:05	KAEMNIVEI	0.9943	0.892	0.2256	118.79	0.285	6.62	1/982	1/7748
SNV	Breast	NEIL1_R109W_8	HLA-C15:05	YTAPPGPWL	0.992	0.9945	0.023	1.9	0.0055	8.06	1/982	1/7748
SNV	Breast	NEIL1_R109W_8	HLA-C15:05	YTAPPGPWLAL	0.9998	0.9909	0.1895	202.21	0.3673	8.06	1/982	1/7748
SNV	Breast	NEIL1_R109W_8	HLA-C01:02	YTAPPGPWL	0.9314	0.9746	0.2258	220.42	0.0183	8.06	1/982	1/7748
SNV	Breast	PBK_E203K_5	HLA-C15:05	VTDPKACYI	0.9924	0.788	0.0115	12.21	0.0606	70.63	1/982	1/7748
SNV	Breast	PLD3_P306A_3	HLA-C15:05	RTADLKALL	0.9997	0.9115	0.1099	5.73	0.0276	118.83	1/982	1/7748
SNV	Breast	PRPF8_E1395Q_7	HLA-C15:05	YALKRQQAI	0.9958	0.8827	0.1895	87.13	0.2452	92.24	1/982	1/7748
SNV	Breast	RPS2_F84L_9	HLA-C15:05	KSLEEIYLL	0.9996	0.93	0.2076	31.41	0.1304	850.33	1/982	1/7748
SNV	Breast	SCARB2_H171D_4	HLA-C15:05	FVTDTVDEL	0.9974	0.8993	0.1541	56.16	0.1924	503.32	1/982	1/7748
SNV	Breast	SCARB2_H171D_3	HLA-C15:05	VTDTVDELL	0.966	0.942	0.0486	155.71	0.325	503.32	1/982	1/7748
SNV	Breast	SCML2_S333L_9	HLA-C15:05	STSAASLKL	0.9985	0.8769	0.1165	63.45	0.208	7.4	1/982	1/7748
SNV	Breast	TMEM245_L653F_3	HLA-C15:05	ALFNFVLSL	0.83	0.9117	0.879	430.99	0.5241	36.17	1/982	1/7748
SNV	Breast	TSC2_L568V_8	HLA-C15:05	KTAVLGLVV	0.9989	0.9374	0.358	88.93	0.2476	23.46	1/982	1/7748
SNV	Breast	VPS13C_M2857I_9	HLA-A02:07	YLVGVSIKI	0.9949	0.5028	0.0311	86.79	0.0574	21.25	1/982	1/7748
SNV	Breast	VPS13C_M2857I_9	HLA-C15:05	YLVGVSIKI	0.9052	0.9234	0.8716	356.87	0.4811	21.25	1/982	1/7748
SNV	Breast	XRCC6_K164N_4	HLA-C15:05	MSHNRIMLF	0.9747	0.8909	0.4159	400.19	0.5068	372.3	1/982	1/7748
SNV	Breast	ZNF334_F60L_9	HLA-C15:05	HVSKPDVIL	0.9938	0.8906	0.3924	212.83	0.3755	2.55	1/982	1/7748
SNV	Breast	ZNF528_L340V_9	HLA-C15:05	KVFSRHSYV	0.9954	0.8493	0.9749	68.75	0.2174	10.81	1/982	1/7748
SNV	Breast	ABLIM3_D193Y_5	HLA-B15:02	YISKYGVPY	0.9897	0.6812	0.0061	42.5	0.0813	21.18	1/982	1/7748
SNV	Breast	ATXN2_P661R_5	HLA-A33:03	EAATRPVAR	0.916	0.8701	0.6005	33.01	0.042	12.92	1/982	1/7748
SNV	Breast	GATB_S134Y_1	HLA-B15:02	YLFDRKHYF	0.9806	0.7426	0.0177	4.97	0.0144	9.61	1/982	1/7748
SNV	Breast	IGKV3-15_C108S_6	HLA-B15:02	FAVYYSQQY	0.9982	0.9248	0.0496	135.11	0.1484	9.59	1/982	1/7748
SNV	Breast	KIDINS220_R638L_8	HLA-A02:06	FLATRLFLV	0.998	0.6199	0.0041	7.35	0.1016	28.53	1/982	1/7748
SNV	Breast	PREX2_R692Q_3	HLA-A02:06	QIQGFGPSV	0.9453	0.7262	0.5809	353.03	0.5111	1.1	1/982	1/7748
SNV	Breast	PREX2_R692Q_4	HLA-A02:06	FQIQGFGPSV	0.9924	0.7492	0.187	15.4	0.1471	1.1	1/982	1/7748
SNV	Breast	PSMD6_R267C_6	HLA-A02:06	SLYECCYSV	0.9973	0.798	0.004	440.63	0.5528	39.9	1/982	1/7748
SNV	Breast	STON1_L514M_2	HLA-B15:02	EMMRFKTLY	0.9717	0.8197	0.187	373.38	0.2356	1.71	1/982	1/7748
SNV	Breast	TSC1_R953K_4	HLA-B15:02	AQKKITQVF	0.96	0.8689	0.166	55.83	0.0966	22.33	1/982	1/7748
SNV	Breast	ZNF700_G160V_9	HLA-A02:06	KAYEYQEYV	0.9887	0.7771	0.2431	5.72	0.0792	11.82	1/982	1/7748
SNV	Breast	ZNF700_G160V_5	HLA-B15:02	YQEYVPKPY	0.8588	0.9232	0.3874	181.17	0.1665	11.82	1/982	1/7748
SNV	Breast	ZNF700_G160V_9	HLA-C08:01	KAYEYQEYV	0.6541	0.9813	0.2347	127.3	0.0963	11.82	1/982	1/7748
SNV	Breast	HECTD4_P2597S_1	HLA-B39:01	SRDLYLPTI	0.9984	0.7961	0.076	30.84	0.0976	12.35	1/982	1/7748
SNV	Breast	HECTD4_P2597S_1	HLA-C07:02	SRDLYLPTI	0.9445	0.8926	0.1256	199.08	0.2694	12.35	1/982	1/7748
SNV	Breast	NARF_G65R_6	HLA-C03:03	MTAEERVQL	0.9998	0.9843	0.0861	17.55	0.1273	14.04	1/982	1/7748
SNV	Breast	NRTN_C14F_9	HLA-C03:03	AAALASVLF	0.9981	0.9953	0.4698	344.69	0.4424	3.14	1/982	1/7748
SNV	Breast	NRTN_C14F_5	HLA-C03:03	ASVLFSSVL	0.9996	0.9937	0.4039	451.5	0.4861	3.14	1/982	1/7748
SNV	Breast	TPR_A1217G_4	HLA-B39:01	FEVGQVESL	0.8659	0.8891	0.1452	145.64	0.2027	44.78	1/982	1/7748
SNV	Breast	TPR_A1217G_6	HLA-B39:01	TRFEVGQVESL	0.9997	0.9322	0.2236	120.82	0.1886	44.78	1/982	1/7748
SNV	Breast	ZNF595_L43M_7	HLA-B39:01	YRNLVSMGF	0.9625	0.9262	0.786	48.78	0.1239	19.9	1/982	1/7748
SNV	Breast	ZNF595_L43M_7	HLA-C07:02	YRNLVSMGF	0.8567	0.8982	0.0435	3.59	0.0119	19.9	1/982	1/7748
SNV	Breast	ACTR1A_S18C_7	HLA-C12:03	VVIDNGCGV	0.811	0.9779	1.3253	127.52	0.5872	75.74	1/982	1/7748
SNV	Breast	ANKEF1_E199K_8	HLA-C12:03	ASREGVVKI	0.9259	0.9706	0.222	133.8	0.6	19.15	1/982	1/7748
SNV	Breast	CDC14B_R477T_4	HLA-A11:01	RTTTSASRK	0.9969	0.5162	0.1495	90.1	0.3003	2.18	1/982	1/7748
SNV	Breast	CEP295_E2244K_5	HLA-C12:03	SSSDKANVF	0.8313	0.9698	0.0761	40.01	0.3295	9.14	1/982	1/7748
SNV	Breast	CKAP2_L506V_7	HLA-C12:03	HTIVDIVTM	0.9707	0.9658	0.278	10.34	0.1267	32.61	1/982	1/7748
SNV	Breast	FASLG_S157Y_6	HLA-C12:03	KSNSRYMPL	0.9952	0.8987	0.5537	323.98	0.905	2.41	1/982	1/7748
SNV	Breast	IMMP2L_P50L_9	HLA-C12:03	ASMQPSLNL	0.9666	0.9619	0.3334	32.59	0.293	11.87	1/982	1/7748
SNV	Breast	LAMA4_D390H_1	HLA-C12:03	HMRDKIQEI	0.9968	0.9872	0.5604	70.51	0.4377	23.6	1/982	1/7748
SNV	Breast	LAMA5_F1430L_9	HLA-C12:03	NAAASLSLL	0.9777	0.9783	0.1365	132.27	0.5969	28.32	1/982	1/7748
SNV	Breast	LAMA5_F1430L_8	HLA-C12:03	AAASLSLLY	0.514	0.9865	0.1564	24.97	0.243	28.32	1/982	1/7748
SNV	Breast	LATS1_E36D_7	HLA-C12:03	MLQEIRDSL	0.9983	0.9858	1.015	344.16	0.9278	20.04	1/982	1/7748
SNV	Breast	MPI_E137Q_9	HLA-B35:03	YPDANHKPQM	0.9824	0.6692	0.1064	14.57	0.0424	23.69	1/982	1/7748
SNV	Breast	MTMR1_E428Q_7	HLA-A11:01	RIADKIQSGK	0.9984	0.5783	0.2306	46.53	0.2153	61.38	1/982	1/7748
SNV	Breast	TUBGCP5_V263F_7	HLA-C12:03	YVPDDRFLV	0.6418	0.9719	1.7212	177.56	0.6897	10.89	1/982	1/7748
SNV	Breast	YWHAZ_G33A_6	HLA-C12:03	SVTEQAAEL	0.9741	0.9376	0.3889	95.14	0.5088	278.25	1/982	1/7748
SNV	Breast	APBB1_A586V_5	HLA-A02:03	HVSVVPATL	0.8771	0.6604	1.122	477.07	1.3377	12.21	1/982	1/7748
SNV	Breast	DLX2_S14L_8	HLA-A02:03	SLVADMHLT	0.9266	0.681	0.4569	113.34	0.8421	1.41	1/982	1/7748
SNV	Breast	DLX2_S14L_7	HLA-A02:03	LVADMHLTQI	0.9928	0.8046	0.7652	252.5	1.0911	1.41	1/982	1/7748
SNV	Breast	GNB2_L308F_3	HLA-A02:03	GVFAGHDNRV	0.9521	0.75	1.1181	335.38	1.1958	338.19	1/982	1/7748
SNV	Breast	MICAL2_S503L_2	HLA-A02:03	GLVRRSVNL	0.9568	0.811	1.3366	32.42	0.5141	31.44	1/982	1/7748
SNV	Breast	MRC1_A10V_1	HLA-A02:03	SVIPGAVLL	0.9191	0.5591	0.878	67.19	0.6904	1.5	1/982	1/7748
SNV	Breast	MRC1_A10V_1	HLA-A02:06	SVIPGAVLL	0.9498	0.66	0.6456	6.63	0.0937	1.5	1/982	1/7748
SNV	Breast	MRC1_A10V_1	HLA-A02:06	SVIPGAVLLL	0.9648	0.6278	0.7749	148.64	0.3698	1.5	2/982	2/7748
SNV	Breast	MRC1_A10V_1	HLA-A02:06	SVIPGAVLLL	0.9648	0.6278	0.7749	148.64	0.3698	1.5	2/982	2/7748
SNV	Breast	MRC1_A10V_1	HLA-C01:02	SVIPGAVLL	0.8565	0.8911	0.0246	237.28	0.0195	1.5	1/982	1/7748
SNV	Breast	ZRANB1_S287L_2	HLA-A02:03	SLGGDIARQL	0.9636	0.5436	1.1236	126.31	0.8725	179.6	1/982	1/7748
SNV	Breast	CHD6_R1397G_5	HLA-A02:03	ALTAGLRRL	0.9331	0.8851	0.8287	25.23	0.4569	6.32	1/982	1/7748
SNV	Breast	CHD6_R1397G_5	HLA-A02:03	ALTAGLRRLV	0.9646	0.8242	1.6561	239.9	1.0727	6.32	1/982	1/7748
SNV	Breast	CHD6_R1397G_8	HLA-C15:05	VSSALTAGL	0.998	0.9665	0.2941	373.91	0.4915	6.32	1/982	1/7748
SNV	Breast	EIF4A2_T395I_1	HLA-A02:03	IVEEMPMNV	0.9308	0.6749	1.5671	120.71	0.8598	81.86	1/982	1/7748
SNV	Breast	EIF4A2_T395I_2	HLA-A02:03	TIVEEMPMNV	0.991	0.7375	1.1607	199.45	1.0064	81.86	1/982	1/7748
SNV	Breast	EIF4A2_T395I_5	HLA-C07:02	FYNTIVEEM	0.8756	0.9371	0.0168	12.39	0.0574	81.86	1/982	1/7748
SNV	Breast	EIF4A2_T395I_1	HLA-C15:05	IVEEMPMNV	0.9932	0.9586	0.4229	33.44	0.1365	81.86	1/982	1/7748
SNV	Breast	EXOG_G257V_1	HLA-A29:01	VFQPQLTEF	0.9918	0.5898	0.611	252.69	0.4092	3.06	1/982	1/7748
SNV	Breast	EXOG_G257V_1	HLA-C07:02	VFQPQLTEF	0.8374	0.9833	0.0249	28.73	0.0955	3.06	1/982	1/7748
SNV	Breast	EXOG_G257V_9	HLA-C15:05	FVVPNEAIV	0.9931	0.8861	0.4545	382.81	0.4967	3.06	1/982	1/7748
SNV	Breast	GCAT_I85T_6	HLA-B39:01	SHPEVTQAGL	0.9947	0.9058	0.2008	408.41	0.2893	14.33	1/982	1/7748
SNV	Breast	GCAT_I85T_2	HLA-C15:05	VTQAGLQAL	0.9973	0.9699	0.0813	121.35	0.2877	14.33	1/982	1/7748
SNV	Breast	HSD17B7_P261S_2	HLA-C15:05	TSYNGTEAL	0.9989	0.8852	0.1071	33.14	0.1356	8.92	1/982	1/7748
SNV	Breast	MSH3_I867V_6	HLA-B39:01	GRHPVVDVL	0.9961	0.8462	0.1093	10.05	0.0532	5.8	1/982	1/7748
SNV	Breast	MSH3_I867V_6	HLA-C07:02	GRHPVVDVL	0.806	0.9592	0.0926	37.71	0.1123	5.8	1/982	1/7748
SNV	Breast	PIK3CD_R927H_2	HLA-B39:01	NHERVPFIL	0.9959	0.7243	0.062	4.59	0.0269	7.15	1/982	1/7748
SNV	Breast	POLQ_S1660L_2	HLA-A02:03	KLMTINFSSL	0.9964	0.5484	0.1698	109.06	0.8313	1.95	1/982	1/7748
SNV	Breast	PRKDC_A1454S_8	HLA-A02:03	RLAAVVSSC	0.9525	0.7036	0.7944	50.53	0.6218	29.25	1/982	1/7748
SNV	Breast	RNF145_E476A_1	HLA-A02:03	ATIFGEWTV	0.8438	0.859	0.8976	390.41	1.2547	101.64	1/982	1/7748
SNV	Breast	RNF145_E476A_7	HLA-C15:05	VAYGVSATI	0.9991	0.9611	0.0665	15.42	0.074	101.64	1/982	1/7748
SNV	Breast	RNF145_E476A_1	HLA-C15:05	ATIFGEWTV	0.9978	0.9731	0.8174	384.26	0.4975	101.64	1/982	1/7748
SNV	Breast	SYCP2_R1181Q_5	HLA-B39:01	SPIPQPLFL	0.7489	0.8898	0.4461	219.7	0.2344	1.15	1/982	1/7748
SNV	Breast	SYCP2_R1181Q_5	HLA-C15:05	SPIPQPLFL	0.832	0.819	0.8174	458.02	0.5382	1.15	1/982	1/7748
SNV	Breast	TBC1D10A_K102Q_7	HLA-A02:03	WMAKKHQKI	0.9182	0.504	0.4155	499.6	1.3583	6.97	1/982	1/7748
SNV	Breast	TLR3_S624F_8	HLA-A02:03	LQKNLITFV	0.9889	0.6355	0.5851	332.9	1.1931	3.3	1/982	1/7748
SNV	Breast	TLR3_S624F_9	HLA-A02:03	NLQKNLITFV	0.9922	0.6248	0.2717	207.67	1.0209	3.3	1/982	1/7748
SNV	Breast	UNC13D_S415F_3	HLA-B39:01	FRFVFPLSV	0.9982	0.9861	0.0367	39.33	0.1109	4.91	1/982	1/7748
SNV	Breast	UNC13D_S415F_5	HLA-C07:02	RRFRFVFPL	0.9915	0.9383	0.0077	165.26	0.2477	4.91	1/982	1/7748
SNV	Breast	UNC13D_S415F_3	HLA-C07:02	FRFVFPLSV	0.8913	0.981	0.0149	13.8	0.0618	4.91	1/982	1/7748
SNV	Breast	A2ML1_F813L_7	HLA-B58:01	RLTATILNY	0.7127	0.8263	1.5738	455.1	0.641	4.2	1/982	1/7748
SNV	Breast	A2ML1_S836L_9	HLA-B58:01	KSHEYQLEL	0.9971	0.882	0.0814	37.21	0.2644	4.2	1/982	1/7748
SNV	Breast	A2ML1_S836L_9	HLA-B58:01	KSHEYQLELW	0.9998	0.9899	0.1731	2.17	0.033	4.2	1/982	1/7748
SNV	Breast	ABCC10_D1417H_7	HLA-C01:02	SVDQKTHQL	0.9999	0.9123	0.012	229.62	0.019	5.6	1/982	1/7748
SNV	Breast	AGAP1_S474L_2	HLA-B58:01	YLVSSADQW	0.9457	0.9931	0.1446	13.15	0.162	17.61	1/982	1/7748
SNV	Breast	AGAP1_S474L_4	HLA-B58:01	RSYLVSSADQW	0.9995	0.9951	0.1446	9.96	0.1408	17.61	1/982	1/7748
SNV	Breast	ANKRD28_E1013K_4	HLA-B58:01	VSFKALPIM	0.9873	0.8389	0.2651	275.17	0.5449	23.08	1/982	1/7748
SNV	Breast	ARVCF_S823L_2	HLA-B58:01	ALHVLQTVW	0.9752	0.9893	0.1838	178.06	0.4748	6.61	1/982	1/7748
SNV	Breast	ARVCF_S823L_3	HLA-B58:01	AALHVLQTVW	0.9995	0.9878	0.1613	8.75	0.1321	6.61	1/982	1/7748
SNV	Breast	ARVCF_S823L_4	HLA-B58:01	KAALHVLQTVW	0.9997	0.9866	0.1898	100.59	0.3935	6.61	1/982	1/7748
SNV	Breast	ASCC3_I1951V_5	HLA-B58:01	IQMVVQGRW	0.8724	0.9807	0.2572	53.11	0.3096	14.57	1/982	1/7748
SNV	Breast	ATAD2B_H673L_7	HLA-C01:02	AVMSSGLAL	0.7621	0.9719	0.3797	296.95	0.0275	15.64	1/982	1/7748
SNV	Breast	C2orf81_S172L_7	HLA-B58:01	RIPLGRLW	0.9972	0.9553	1.2723	271.25	0.5424	10.23	1/982	1/7748
SNV	Breast	C2orf81_S172L_10	HLA-B58:01	GVDRIPLGRLW	0.9997	0.9506	0.5323	222.59	0.5081	10.23	1/982	1/7748
SNV	Breast	CPXM1_E423K_6	HLA-B58:01	LVGWAKGRW	0.9272	0.9702	0.2691	406.08	0.6157	11.08	1/982	1/7748
SNV	Breast	CSPG4_D1048N_7	HLA-B58:01	VAFSDANSGF	0.9651	0.943	0.5867	499.39	0.6615	7.59	1/982	1/7748
SNV	Breast	CST8_Q77K_8	HLA-B58:01	KTLQAQLKV	0.9694	0.9519	0.3505	77.99	0.3601	2.1	1/982	1/7748
SNV	Breast	CYTH3_R382T_5	HLA-B58:01	ASISTDPFY	0.9336	0.8827	0.2235	17.2	0.1883	14.09	1/982	1/7748
SNV	Breast	CYTH3_R382T_6	HLA-B58:01	KASISTDPFY	0.9703	0.8649	0.8931	116.14	0.4135	14.09	1/982	1/7748
SNV	Breast	DDX20_Q800E_4	HLA-B58:01	WNAERHPSW	0.6971	0.9152	0.3157	292.77	0.5556	7.54	1/982	1/7748
SNV	Breast	DSP_K1874T_2	HLA-B58:01	RTEEAIRKI	0.8574	0.9768	1.2551	270.89	0.5422	177.22	1/982	1/7748
SNV	Breast	EDEM3_D520Y_9	HLA-B58:01	TTSEYTELY	0.8458	0.9016	0.5455	141.96	0.4423	32.42	1/982	1/7748
SNV	Breast	EDEM3_D520Y_3	HLA-B58:01	ELYDSNFDW	0.8382	0.8265	0.2611	147.71	0.448	32.42	1/982	1/7748
SNV	Breast	EDEM3_D520Y_5	HLA-B58:01	YTELYDSNFDW	0.9968	0.8291	0.6131	229.1	0.5131	32.42	1/982	1/7748
SNV	Breast	EIF4A2_E389K_7	HLA-B58:01	RILRDIKTF	0.7777	0.8441	0.58	61.04	0.3279	140.86	1/982	1/7748
SNV	Breast	ENPEP_Q570K_1	HLA-B58:01	KPPSDLGYTW	0.9665	0.983	0.4411	142.4	0.4427	3.99	1/982	1/7748
SNV	Breast	EPS8_A96G_5	HLA-B58:01	KLLDGKGKVW	0.995	0.9884	0.2651	183.25	0.4789	21.6	1/982	1/7748
SNV	Breast	FAM173B_S138F_10	HLA-B58:01	RAWREGVHGF	0.9952	0.8817	1.1859	10.94	0.147	13.7	1/982	1/7748
SNV	Breast	FAM173B_S138F_1	HLA-B58:01	FAKFYISDLW	0.9989	0.7856	0.3551	210.14	0.4985	13.7	1/982	1/7748
SNV	Breast	FAM72A_D136N_3	HLA-B58:01	STNEDVLNI	0.9267	0.9105	0.9695	389.25	0.6064	9.1	1/982	1/7748
SNV	Breast	GPR157_R198K_1	HLA-B58:01	KAHTALSEY	0.9879	0.8371	0.1166	26.73	0.2305	81.36	1/982	1/7748
SNV	Breast	HELQ_S403T_2	HLA-B58:01	STFGIELGF	0.9801	0.9798	0.0334	5.44	0.0944	4.4	1/982	1/7748
SNV	Breast	ITGB3BP_D84Y_7	HLA-B58:01	STTKDNYEF	0.9646	0.9549	0.0938	12.18	0.1554	14.58	1/982	1/7748
SNV	Breast	KDM4A_E728Q_3	HLA-A02:07	YLQEDGTSI	0.9767	0.6207	0.1218	59.4	0.0502	25.67	1/982	1/7748
SNV	Breast	KMT2D_D1438N_3	HLA-B58:01	ASNPSRLLL	0.992	0.7721	0.4096	59.53	0.3246	14.98	1/982	1/7748
SNV	Breast	MBNL3_P342T_9	HLA-B58:01	ATTPATSVTF	0.9963	0.9621	0.201	33.21	0.25	1.75	1/982	1/7748
SNV	Breast	MINPP1_E486K_8	HLA-B58:01	RANSTSDKL	0.8563	0.8745	1.076	285.39	0.5512	20.79	3/982	3/7748
SNV	Breast	MINPP1_E486K_8	HLA-B58:01	RANSTSDKL	0.8563	0.8745	1.076	285.39	0.5512	20.79	3/982	3/7748
SNV	Breast	MINPP1_E486K_8	HLA-B58:01	RANSTSDKL	0.8563	0.8745	1.076	285.39	0.5512	20.79	3/982	3/7748
SNV	Breast	MXRA5_M225I_7	HLA-B58:01	WTCDCEIRW	0.9923	0.9611	0.0419	155.78	0.4556	33.93	1/982	1/7748
SNV	Breast	MYOF_R1836T_1	HLA-B58:01	TSLDGEGNFNW	0.9996	0.9896	0.1275	21.74	0.2118	14.06	1/982	1/7748
SNV	Breast	MYOF_R1836T_7	HLA-C01:02	KTDVHYTSL	0.9998	0.912	0.0139	342.86	0.0339	14.06	1/982	1/7748
SNV	Breast	NAGS_L521V_5	HLA-B58:01	HAKGVPDSF	0.9075	0.9575	0.58	120.94	0.4193	1.38	1/982	1/7748
SNV	Breast	NR1H4_D373N_3	HLA-B58:01	ISNEYITPMF	0.9979	0.6193	0.6626	140.58	0.4409	1.41	1/982	1/7748
SNV	Breast	NUMA1_E1285K_4	HLA-C01:02	RAAKRSSAL	0.6766	0.9432	0.163	410.97	0.0409	42.44	1/982	1/7748
SNV	Breast	OLR1_P145Q_6	HLA-B58:01	CSAPCQQDW	0.9974	0.9316	0.0394	147.77	0.448	10.67	1/982	1/7748
SNV	Breast	PCYT2_Q198E_4	HLA-B58:01	QTSEKIIQF	0.9942	0.9427	0.0889	11.76	0.1524	28.71	1/982	1/7748
SNV	Breast	PDE4DIP_A2257S_2	HLA-B58:01	RSALPSTHI	0.9961	0.8928	0.3275	95.9	0.3873	6.25	1/982	1/7748
SNV	Breast	PI4KA_D911H_6	HLA-B58:01	RSTDPHRF	0.996	0.9248	1.0964	417.56	0.6219	39.75	1/982	1/7748
SNV	Breast	PKD2_P546L_9	HLA-A02:07	FLEDQNTFL	0.9882	0.5954	0.047	6.52	0.0129	9.66	1/982	1/7748
SNV	Breast	PKD2_P546L_1	HLA-B58:01	LNFEHLAYW	0.9977	0.9299	0.0524	64.1	0.3344	9.66	1/982	1/7748
SNV	Breast	POFUT1_Q88E_4	HLA-B58:01	VSYEKYFKL	0.9943	0.9054	0.2572	286.95	0.5522	36.87	1/982	1/7748
SNV	Breast	PPIP5K2_Y234H_5	HLA-B58:01	KTGSHIYEEF	0.9967	0.989	0.3951	251.66	0.5294	9.36	1/982	1/7748
SNV	Breast	PTPRJ_E952K_1	HLA-B58:01	KSYVSFSRY	0.9942	0.5259	0.1234	11.51	0.1505	7.14	1/982	1/7748
SNV	Breast	RAPGEF1_E863K_5	HLA-B58:01	IEIPKVLLW	0.8947	0.8683	0.2561	64.22	0.3346	71.15	1/982	1/7748
SNV	Breast	RAPGEF1_E863K_6	HLA-B58:01	KIEIPKVLLW	0.9984	0.9463	0.4191	20.08	0.2047	71.15	1/982	1/7748
SNV	Breast	RASSF5_K397N_7	HLA-B58:01	KIQQVQNKY	0.7224	0.6646	1.5282	251.77	0.5295	77.31	1/982	1/7748
SNV	Breast	RXRA_G343C_6	HLA-B58:01	HSAGVCAIF	0.9755	0.9421	0.162	460.55	0.6436	109.86	1/982	1/7748
SNV	Breast	SGSM1_D1068N_3	HLA-B58:01	VYNDVFLVW	0.9438	0.9682	0.4472	446.68	0.6368	2.07	1/982	1/7748
SNV	Breast	SGSM1_D1068N_4	HLA-B58:01	LVYNDVFLVW	0.9995	0.9685	0.1838	47.92	0.2963	2.07	1/982	1/7748
SNV	Breast	SLU7_M20I_1	HLA-B58:01	ISLEEPKKM	0.9865	0.9588	0.6626	477.46	0.6516	40.06	1/982	1/7748
SNV	Breast	SLX4_S381G_1	HLA-B58:01	GSSPPMFSF	0.9937	0.7594	0.0394	1.86	0.0268	6.43	1/982	1/7748
SNV	Breast	SPG20_R355T_3	HLA-B58:01	RTTPSSDQL	0.8994	0.8231	0.4228	87.18	0.3747	16.2	1/982	1/7748
SNV	Breast	SRCAP_L2079I_1	HLA-B58:01	ITYHGHLYL	0.9895	0.854	0.1721	135.09	0.4352	56.62	1/982	1/7748
SNV	Breast	SRCAP_L2079I_1	HLA-C01:02	ITYHGHLYL	0.6111	0.9472	0.4838	264.12	0.0225	56.62	1/982	1/7748
SNV	Breast	STKLD1_L332I_3	HLA-B58:01	SIIEVMQKF	0.9514	0.6124	0.5526	74.44	0.354	1.12	1/982	1/7748
SNV	Breast	STKLD1_L332I_4	HLA-B58:01	ASIIEVMQKF	0.9979	0.6927	0.3505	54.36	0.3127	1.12	1/982	1/7748
SNV	Breast	STS_D334V_5	HLA-B58:01	RLANVTLIY	0.8287	0.9238	1.2956	86.11	0.3731	23.91	1/982	1/7748
SNV	Breast	STS_D334V_4	HLA-B58:01	LANVTLIYF	0.9867	0.7724	0.0669	350.24	0.5867	23.91	1/982	1/7748
SNV	Breast	SUGCT_Y347H_7	HLA-B58:01	LTSKWLHLF	0.9978	0.9285	0.0098	41.54	0.2783	3.06	1/982	1/7748
SNV	Breast	TBCD_H72D_1	HLA-B58:01	DLLDPHLEW	0.9291	0.995	0.4228	270.92	0.5422	32.38	1/982	1/7748
SNV	Breast	TBL3_G266A_2	HLA-B58:01	AADQGTLRVW	0.9986	0.9881	0.1994	6.93	0.1137	26.74	1/982	1/7748
SNV	Breast	TBL3_G266A_3	HLA-B58:01	TAADQGTLRVW	0.9997	0.986	0.2035	54.42	0.3128	26.74	1/982	1/7748
SNV	Breast	THADA_K168N_4	HLA-A02:07	FLQNSLIEI	0.9983	0.6629	0.0698	17.87	0.028	15.62	1/982	1/7748
SNV	Breast	TMEM192_I49M_3	HLA-B58:01	TVMIVNLLW	0.9952	0.8783	0.0217	3.12	0.0582	7.04	1/982	1/7748
SNV	Breast	TPSB2_Y263F_1	HLA-A02:07	FLDWIHHYV	0.9989	0.6126	0.0022	2.43	0.0054	5.51	1/982	1/7748
SNV	Breast	TRAPPC10_E1053K_3	HLA-B58:01	KVKNFFTLY	0.9817	0.757	0.8414	426.34	0.6265	8.61	1/982	1/7748
SNV	Breast	TSPYL4_P251S_6	HLA-B58:01	IIQNISGFW	0.9809	0.8958	0.1285	158.23	0.4578	17.02	1/982	1/7748
SNV	Breast	TTC39A_F446L_2	HLA-A02:07	YLSSNPISL	0.9951	0.6018	0.0431	10.72	0.0182	24.92	1/982	1/7748
SNV	Breast	TTC39A_F446L_2	HLA-C01:02	YLSSNPISL	0.9873	0.8897	0.0246	113.21	0.0093	24.92	1/982	1/7748
SNV	Breast	UBASH3A_P524S_4	HLA-B58:01	KTTSTLMSL	0.9924	0.8525	0.1214	89.86	0.3787	1.13	1/982	1/7748
SNV	Breast	UGP2_G57E_8	HLA-B58:01	HTKKDLDEF	0.9781	0.9801	0.4705	246.79	0.526	118.74	1/982	1/7748
SNV	Breast	VPS13D_S1256F_9	HLA-B58:01	ISDIGYFEF	0.9588	0.9154	0.1596	78.73	0.3613	20.7	1/982	1/7748
SNV	Breast	WDR76_G468V_2	HLA-B58:01	AVLRDTHIY	0.7114	0.9326	1.288	240.33	0.5214	29.67	1/982	1/7748
SNV	Breast	XPO6_I729M_6	HLA-B58:01	RALSNMLLL	0.9914	0.8338	0.1348	43.77	0.2849	55.2	1/982	1/7748
SNV	Breast	XPO6_I729M_4	HLA-B58:01	LSNMLLLPW	0.999	0.9525	0.0092	75.82	0.3564	55.2	1/982	1/7748
SNV	Breast	XPO6_I729M_6	HLA-B58:01	RALSNMLLLPW	0.9986	0.8909	0.2211	126.96	0.4263	55.2	1/982	1/7748
SNV	Breast	ZNF816_L19V_3	HLA-B58:01	MAVPQGRLTF	0.9901	0.9771	0.2235	18.85	0.1987	5.97	1/982	1/7748
SNV	Breast	ABCC9_R397T_8	HLA-C07:02	MIYNKILTL	0.9809	0.9436	0.5212	17.1	0.0711	2.77	1/982	1/7748
SNV	Breast	ABCC9_R397T_8	HLA-C15:05	MIYNKILTL	0.9992	0.9497	0.3924	9.67	0.0516	2.77	1/982	1/7748
SNV	Breast	AGO1_R88H_5	HLA-C07:02	IFGDHKPVY	0.7363	0.923	0.1925	407.4	0.3672	17.66	1/982	1/7748
SNV	Breast	ARNTL2_R118Q_1	HLA-C07:02	QRRDKMNNL	0.9377	0.9306	0.4018	211.46	0.2765	2.69	1/982	1/7748
SNV	Breast	B4GALT5_F214S_5	HLA-C15:05	RAMLSNVGF	0.7122	0.7251	1.9361	446.77	0.5324	27.97	1/982	1/7748
SNV	Breast	DEGS1_K29R_8	HLA-C07:02	RRREILARY	0.8126	0.7622	0.3064	90.22	0.1842	50.18	1/982	1/7748
SNV	Breast	DEGS1_K29R_2	HLA-C07:02	ARYPEIKSL	0.9042	0.9472	0.0226	4.15	0.0152	50.18	1/982	1/7748
SNV	Breast	DEGS1_K29R_1	HLA-C07:02	RYPEIKSLM	0.8797	0.952	0.0676	14.04	0.0625	50.18	1/982	1/7748
SNV	Breast	DEGS1_K29R_2	HLA-C07:02	ARYPEIKSLM	0.9923	0.9606	0.072	191.11	0.2646	50.18	1/982	1/7748
SNV	Breast	FUZ_G48E_8	HLA-C15:05	SVIGSLNEV	0.9996	0.9476	0.4803	43.93	0.1631	22.51	1/982	1/7748
SNV	Breast	KIAA1549_H1082Y_2	HLA-C07:02	KYHQGTYNL	0.5421	0.8941	0.0399	8.32	0.0391	9.88	1/982	1/7748
SNV	Breast	PCDHB6_V179I_8	HLA-C08:01	SSNPHFHIL	0.9853	0.9548	0.0345	145.12	0.103	1.21	1/982	1/7748
SNV	Breast	PCDHB6_V179I_8	HLA-C01:02	SSNPHFHIL	0.9502	0.9294	0.0061	348.87	0.0346	1.21	1/982	1/7748
SNV	Breast	UBN2_S861Y_1	HLA-C08:01	YIQNPKVSL	0.9294	0.9784	0.1646	364.05	0.1639	19.85	1/982	1/7748
SNV	Breast	UBN2_S861Y_1	HLA-C01:02	YIQNPKVSL	0.9945	0.9377	0.0616	258.13	0.0217	19.85	1/982	1/7748
SNV	Breast	ACTA1_E336K_6	HLA-B57:01	IIAPPKRKY	0.5335	0.7835	1.4324	352.6	0.4437	3.91	1/982	1/7748
SNV	Breast	ADAM28_D736Y_8	HLA-A02:06	QMKPHVYYL	0.9222	0.6289	0.203	476.72	0.5677	2.53	1/982	1/7748
SNV	Breast	ADAM28_D736Y_9	HLA-A02:06	SQMKPHVYYL	0.9412	0.6511	1.6212	30.11	0.1963	2.53	1/982	1/7748
SNV	Breast	CD300LF_D102N_3	HLA-B57:01	KTNADTYW	0.9996	0.9747	0.4587	2.73	0.0333	3.65	1/982	1/7748
SNV	Breast	CERKL_E535K_4	HLA-B57:01	VASKVHIRL	0.9851	0.9433	0.6649	104.65	0.2859	2.74	1/982	1/7748
SNV	Breast	CFAP70_L941V_5	HLA-B57:01	QTHIVKKNF	0.9674	0.8502	0.3331	31.26	0.1957	3.64	1/982	1/7748
SNV	Breast	COPB1_P774S_8	HLA-A02:06	KLVEKPSSL	0.9754	0.8319	0.4008	89.53	0.302	198.68	1/982	1/7748
SNV	Breast	DNAJC9_G82E_7	HLA-A02:06	AVYDEQETV	0.9828	0.7215	0.3554	2.15	0.0253	19.18	1/982	1/7748
SNV	Breast	ERBB2_I767M_1	HLA-A02:06	MLDEAYVMA	0.9943	0.6752	0.409	11.3	0.1286	140.44	1/982	1/7748
SNV	Breast	FAM208B_H2271D_4	HLA-A02:06	VLDDTYQEL	0.9935	0.7238	0.4146	3.36	0.0444	58.72	1/982	1/7748
SNV	Breast	FAM208B_H2271D_4	HLA-C08:01	VLDDTYQEL	0.8981	0.986	0.006	9.76	0.0148	58.72	1/982	1/7748
SNV	Breast	GFM2_T142I_5	HLA-A02:06	NLIDIPGHV	0.9955	0.7646	0.0686	12.36	0.134	33.16	1/982	1/7748
SNV	Breast	GON4L_I1164M_2	HLA-A02:06	MMQPVNAAV	0.9965	0.8829	0.0429	19.18	0.1614	35.58	1/982	1/7748
SNV	Breast	HMGB2_E116K_3	HLA-B57:01	KSKHPGLSI	0.9941	0.8638	0.4079	30.41	0.1936	96.1	1/982	1/7748
SNV	Breast	IFIH1_E41Q_8	HLA-A02:06	YLTFLPAQV	0.9959	0.9177	0.0439	38.15	0.2178	36.12	1/982	1/7748
SNV	Breast	LILRA2_S176T_8	HLA-B57:01	HSHARGWTW	0.9995	0.9805	0.002	1.31	0.0073	2.03	1/982	1/7748
SNV	Breast	LILRA2_S176T_9	HLA-B57:01	SHSHARGWTW	0.9958	0.9748	1.2483	14.46	0.131	2.03	1/982	1/7748
SNV	Breast	MADD_E1476Q_7	HLA-B57:01	NIGTVYQRW	0.9922	0.9578	0.3005	439	0.4725	30.08	1/982	1/7748
SNV	Breast	MADD_E1476Q_9	HLA-B57:01	RSNIGTVYQRW	1	0.9838	0.0566	12.34	0.1205	30.08	1/982	1/7748
SNV	Breast	MAP4K3_G201V_2	HLA-A02:06	VVITAIELA	0.8917	0.6933	1.0864	498.89	0.5762	48.63	1/982	1/7748
SNV	Breast	MCTP1_M395I_5	HLA-B57:01	VTMLIRKSW	0.9992	0.7834	0.0061	1.4	0.0091	1.18	1/982	1/7748
SNV	Breast	MCTP1_M395I_7	HLA-B57:01	RDVTMLIRKSW	0.9998	0.7543	1.2577	290.19	0.418	1.18	1/982	1/7748
SNV	Breast	PGRMC1_E24K_1	HLA-A02:06	KIFTSPLNL	0.9688	0.6777	0.9127	184.38	0.3986	475.71	1/982	1/7748
SNV	Breast	REM2_I193L_9	HLA-A02:06	LQTGDAFLL	0.8204	0.5231	0.6877	433.1	0.5496	3.2	1/982	1/7748
SNV	Breast	SEMA4A_L432V_8	HLA-A02:06	GLDGHSHVV	0.9866	0.7894	0.3362	41.2	0.2248	21.36	1/982	1/7748
SNV	Breast	SLC27A5_G686E_5	HLA-A02:06	AVCEETWRL	0.9427	0.7746	0.67	219.43	0.4282	1.74	3/982	3/7748
SNV	Breast	SLC27A5_G686E_5	HLA-A02:06	AVCEETWRL	0.9427	0.7746	0.67	219.43	0.4282	1.74	3/982	3/7748
SNV	Breast	SLC27A5_G686E_5	HLA-A02:06	AVCEETWRL	0.9427	0.7746	0.67	219.43	0.4282	1.74	3/982	3/7748
SNV	Breast	SRCIN1_H212D_3	HLA-C08:01	IADMFPQKL	0.8922	0.9823	0.0131	14.25	0.0196	15.86	1/982	1/7748
SNV	Breast	STEAP3_V404A_5	HLA-A02:06	FVALALSTL	0.9311	0.7199	0.2431	128.91	0.3508	35.59	1/982	1/7748
SNV	Breast	STEAP3_V404A_5	HLA-C08:01	FVALALSTL	0.948	0.9975	0.3801	258.28	0.139	35.59	1/982	1/7748
SNV	Breast	STEAP3_V404A_2	HLA-C08:01	LALSTLHTL	0.8659	0.9951	0.0943	151.35	0.1052	35.59	1/982	1/7748
SNV	Breast	TAF5L_Y417N_3	HLA-B57:01	RTNPLRIY	0.9995	0.9784	1.5664	78.31	0.2653	41.88	1/982	1/7748
SNV	Breast	TAF5L_Y417N_7	HLA-C08:01	WSFDRTNPL	0.9795	0.9637	0.0464	302.93	0.1522	41.88	1/982	1/7748
SNV	Breast	TBC1D15_F250Y_1	HLA-B57:01	YSKVTNYIF	0.9984	0.6958	0.2407	287.73	0.4169	19.93	1/982	1/7748
SNV	Breast	TCF3_R561W_9	HLA-B57:01	ANNARERLW	0.9938	0.9838	0.6741	417.98	0.4661	57.14	1/982	1/7748
SNV	Breast	TCF3_R561W_10	HLA-B57:01	VANNARERLW	0.9999	0.9743	0.1653	3.63	0.0454	57.14	1/982	1/7748
SNV	Breast	TCF3_R561W_11	HLA-B57:01	RVANNARERLW	0.9999	0.9859	0.12	26.73	0.1836	57.14	1/982	1/7748
SNV	Breast	TNFAIP1_K219N_8	HLA-C06:02	SFYGQGRNL	0.6453	0.9934	0.3695	201.42	0.1321	92.11	1/982	1/7748
SNV	Breast	TNFRSF1A_S25L_5	HLA-A02:06	GIYPLGVIGL	0.9347	0.5206	0.8876	85.06	0.2963	60.62	1/982	1/7748
SNV	Breast	VPS13D_E2745K_5	HLA-B57:01	RTSPKGYAHF	0.9998	0.9548	0.1172	4.95	0.0639	11.86	1/982	1/7748
SNV	Breast	ZNF2_S186L_7	HLA-B57:01	KTFFDHLSL	0.9966	0.9187	0.1374	21.61	0.164	10.01	1/982	1/7748
SNV	Breast	EHHADH_H590Y_3	HLA-C15:05	RIYKPDPWL	0.9759	0.959	1.7545	73	0.2245	8.68	1/982	1/7748
SNV	Breast	FAM20C_I493M_8	HLA-C15:05	YSHDELSML	0.9994	0.9325	0.0125	24.46	0.1064	21.01	1/982	1/7748
SNV	Breast	GNL3L_G232A_2	HLA-C15:05	FAAENLMRV	0.9996	0.9545	0.0486	5.13	0.023	23.16	1/982	1/7748
SNV	Breast	MAP3K9_L937F_1	HLA-C15:05	FSPSPGAGM	0.91	0.9399	0.0578	193	0.3597	3.75	1/982	1/7748
SNV	Breast	PARPBP_S282L_9	HLA-C15:05	SIAGGQILL	0.998	0.8736	0.4668	177.53	0.3462	5.11	1/982	1/7748
SNV	Breast	PARPBP_S282L_8	HLA-C15:05	IAGGQILLV	0.9985	0.8663	0.1541	205.1	0.3696	5.11	1/982	1/7748
SNV	Breast	SLC30A7_E128Q_6	HLA-C15:05	FSEGVQRAL	0.9996	0.8599	0.0348	67.02	0.2144	16.79	1/982	1/7748
SNV	Breast	TJP2_Q842E_5	HLA-A02:07	KLFDEANKL	0.997	0.6553	0.1339	39.15	0.0411	74.19	1/982	1/7748
SNV	Breast	TJP2_Q842E_5	HLA-C15:05	KLFDEANKL	0.9116	0.9403	0.3058	221.89	0.3823	74.19	1/982	1/7748
SNV	Breast	ARSH_I384M_5	HLA-C03:04	SLMDMYPTL	0.9646	0.9825	0.6211	11.32	0.0908	3.04	1/982	1/7748
SNV	Breast	CNTLN_R514S_1	HLA-B58:01	SSLSPKSSF	0.9875	0.7566	0.2035	32.87	0.2491	1.61	1/982	1/7748
SNV	Breast	FAM21A_A294T_6	HLA-C03:04	FADELTARI	0.999	0.9928	0.0794	30.74	0.1673	11.55	1/982	1/7748
SNV	Breast	FAM227A_K329N_8	HLA-A33:03	EFSLFAGNR	0.9723	0.624	0.5101	122.78	0.1125	1.14	1/982	1/7748
SNV	Breast	FAM227A_K329N_6	HLA-C03:04	SLFAGNRAF	0.7322	0.9921	0.4609	49.09	0.1999	1.14	1/982	1/7748
SNV	Breast	GBA_L280F_10	HLA-B13:01	AENEPSAGLF	0.9939	0.6868	0.1206	149.84	0.1539	64.84	1/982	1/7748
SNV	Breast	HERPUD2_T51M_9	HLA-C03:04	NVYPSKPLM	0.9982	0.9846	0.3766	56.85	0.2153	25.13	1/982	1/7748
SNV	Breast	PANK1_M501I_9	HLA-C03:04	VASSFGNMI	0.9797	0.9902	0.2975	220.99	0.375	3.06	1/982	1/7748
SNV	Breast	SIGLEC7_A438S_6	HLA-B13:01	REIQYSPLSF	0.9963	0.7968	0.0956	125.25	0.1374	3.82	1/982	1/7748
SNV	Breast	SNF8_I198M_3	HLA-B13:01	SEMKASLKW	0.9499	0.9412	0.238	37.3	0.0663	17.51	1/982	1/7748
SNV	Breast	SNF8_I198M_3	HLA-B58:01	SEMKASLKW	0.8639	0.9215	0.3925	446.86	0.6369	17.51	1/982	1/7748
SNV	Breast	SNF8_I198M_4	HLA-B58:01	VSEMKASLKW	0.9987	0.9339	0.3724	4.1	0.0729	17.51	1/982	1/7748
SNV	Breast	SNF8_I198M_5	HLA-C03:04	TVSEMKASL	0.9984	0.9845	0.3955	198.38	0.3602	17.51	1/982	1/7748
SNV	Breast	SNX24_F22I_4	HLA-C03:04	YTVIKIEVL	0.9997	0.9946	0.1275	42.36	0.1891	6.34	1/982	1/7748
SNV	Breast	TP53_H168P_5	HLA-B13:01	KQSQPMTEV	0.7052	0.9625	0.436	249.91	0.2115	75.89	1/982	1/7748
SNV	Breast	ALCAM_G36E_4	HLA-C15:05	SAYEDTIII	0.9981	0.8683	0.1784	17.25	0.0824	88.77	1/982	1/7748
SNV	Breast	ACADVL_D269H_3	HLA-A11:02	VTHPATGAVK	0.998	0.6319	0.2419	409.05	0.5244	47.17	1/982	1/7748
SNV	Breast	CHD4_A235P_4	HLA-B15:02	AAVPVVESM	0.998	0.9463	0.2904	471.58	0.2616	177.15	1/982	1/7748
SNV	Breast	CHD4_A235P_7	HLA-C08:01	AAAAAVPVV	0.9191	0.9938	0.322	386.94	0.1678	177.15	1/982	1/7748
SNV	Breast	CHD4_A235P_4	HLA-C08:01	AAVPVVESM	0.9453	0.9871	0.0209	156.7	0.1071	177.15	1/982	1/7748
SNV	Breast	DNTTIP2_E144V_2	HLA-A11:02	AVSHVSGISR	0.9959	0.8218	0.1721	312.54	0.4785	61.19	1/982	1/7748
SNV	Breast	GBP4_D176H_1	HLA-B15:02	HEAEDSSEF	0.5988	0.961	1.0284	220.23	0.1801	118.78	1/982	1/7748
SNV	Breast	GTF3C6_D34Y_9	HLA-B15:02	ELSGIIDSY	0.9258	0.7106	0.3541	24.2	0.0569	136.46	1/982	1/7748
SNV	Breast	MORF4L1_A118G_4	HLA-B15:02	LQKGNQEQY	0.9479	0.9253	0.1609	162.15	0.1596	144.3	1/982	1/7748
SNV	Breast	NPEPPS_L743V_4	HLA-B15:02	SADVRSPVY	0.9862	0.9416	0.5524	118.84	0.1409	25.37	1/982	1/7748
SNV	Breast	PAN2_E195D_3	HLA-C08:01	AVDTPGVTI	0.598	0.9727	0.0239	43.93	0.0496	8.95	1/982	1/7748
SNV	Breast	PAN2_E195D_4	HLA-C08:01	YAVDTPGVTI	0.9815	0.9779	0.0694	160.24	0.1083	8.95	1/982	1/7748
SNV	Breast	ROBO1_D1523H_7	HLA-A11:02	RTDRSSHRK	0.9953	0.6911	0.3593	91.52	0.3024	6.05	1/982	1/7748
SNV	Breast	SLC25A1_G237R_10	HLA-A11:02	AIAGAASVFR	0.9935	0.5355	0.1806	174.76	0.3889	69.39	1/982	1/7748
SNV	Breast	ZNF587_G432A_5	HLA-B15:02	RLHTAERPY	0.9779	0.9655	0.221	426.84	0.2513	3.95	1/982	1/7748
SNV	Breast	AASDHPPT_E32K_4	HLA-C07:02	SRAKWLLAV	0.9468	0.9484	0.1136	99.49	0.1937	34.65	1/982	1/7748
SNV	Breast	GPR162_F395L_3	HLA-C15:05	MLLPPLERV	0.9838	0.973	1.6067	487.12	0.5525	3	1/982	1/7748
SNV	Breast	HAX1_P259A_1	HLA-C15:05	AALDDAFSI	0.9983	0.9549	0.2846	84.56	0.2417	121.97	1/982	1/7748
SNV	Breast	IL27RA_L20P_4	HLA-C15:05	LALPPLLWV	0.996	0.9939	0.4422	169.96	0.3392	19.82	1/982	1/7748
SNV	Breast	KATNBL1_E39K_8	HLA-C15:05	FTNKNMKKV	0.9904	0.8753	0.2489	226.23	0.3854	11.79	1/982	1/7748
SNV	Breast	MAATS1_E593K_1	HLA-C07:02	KRRIHAFVM	0.9575	0.8652	0.1256	157.3	0.2424	1.04	1/982	1/7748
SNV	Breast	MRPS23_L154F_1	HLA-C15:05	FSVRPQTAL	0.9991	0.8362	0.0377	22.66	0.0995	12.43	1/982	1/7748
SNV	Breast	NEK11_D481N_4	HLA-C07:02	YYANAFDSY	0.5241	0.8479	0.1356	27.77	0.0937	17.41	1/982	1/7748
SNV	Breast	OTC_Q69H_5	HLA-C07:02	FRIKHKGEY	0.804	0.8263	0.0059	77.04	0.1698	1.65	1/982	1/7748
SNV	Breast	PPOX_E157K_6	HLA-C07:02	RRLGPKVASL	0.9982	0.9736	0.122	340.26	0.3406	21.81	1/982	1/7748
SNV	Breast	RAPGEF2_D1302N_4	HLA-C07:02	MFSNHSTKY	0.6299	0.7446	0.2294	484.76	0.3929	22.31	1/982	1/7748
SNV	Breast	TARBP1_Q1340E_4	HLA-C07:02	QRIEEHFFF	0.9906	0.9805	0.0496	17.58	0.0721	33.92	1/982	1/7748
SNV	Breast	ZNF689_S414L_7	HLA-C07:02	RRFAYPLL	0.9991	0.9559	0.3508	203.82	0.2721	9.83	1/982	1/7748
SNV	Breast	ZNF689_S414L_7	HLA-C07:02	RRFAYPLLL	0.9943	0.9497	0.0055	1.94	0.0056	9.83	1/982	1/7748
SNV	Breast	ZNF800_S274F_9	HLA-C07:02	TRKNPNQSF	0.803	0.934	0.1285	61.68	0.1515	29.22	1/982	1/7748
SNV	Breast	ACTG1_D81G_6	HLA-B58:01	VTNWDGMEKIW	0.9997	0.9845	0.2425	284.65	0.5508	4128.03	1/982	1/7748
SNV	Breast	AURKAIP1_G4R_7	HLA-A02:03	RLTSQLLRA	0.9782	0.6349	0.694	78.11	0.7333	183.85	1/982	1/7748
SNV	Breast	AURKAIP1_G4R_7	HLA-A02:03	RLTSQLLRAV	0.9973	0.7705	0.4725	299.64	1.1541	183.85	2/982	2/7748
SNV	Breast	AURKAIP1_G4R_7	HLA-A02:03	RLTSQLLRAV	0.9973	0.7705	0.4725	299.64	1.1541	183.85	2/982	2/7748
SNV	Breast	DNMT1_G1078C_4	HLA-B58:01	YSMCGPNRF	0.9899	0.6228	0.1048	62.1	0.3302	36.8	1/982	1/7748
SNV	Breast	EIF2B1_A144G_5	HLA-B58:01	AAVAGKKRF	0.6967	0.978	0.9086	119.91	0.4181	45.84	1/982	1/7748
SNV	Breast	GDI1_N84I_5	HLA-A02:03	FLMAIGQLV	0.9985	0.7907	0.0018	1.45	0.032	136.86	1/982	1/7748
SNV	Breast	GDI1_N84I_3	HLA-B58:01	MAIGQLVKM	0.9955	0.8796	0.4626	319.24	0.5706	136.86	1/982	1/7748
SNV	Breast	PIK3CA_M1043I_2	HLA-B58:01	QINDAHHGGW	0.971	0.9886	0.4344	467.56	0.6469	24.07	1/982	1/7748
SNV	Breast	PKD1_V3783I_7	HLA-B58:01	STSDYDIGW	0.9927	0.8571	0.0227	1.75	0.0249	12.7	1/982	1/7748
SNV	Breast	PKD1_V3783I_8	HLA-B58:01	FSTSDYDIGW	0.9973	0.8417	0.1348	28.45	0.2361	12.7	1/982	1/7748
SNV	Breast	SGSM1_I346T_2	HLA-B58:01	GTQRPPFRF	0.9863	0.8169	0.6095	12.4	0.1569	1.14	1/982	1/7748
SNV	Breast	TBC1D8B_Q631R_8	HLA-A02:03	LIRDHLPRL	0.9683	0.6331	0.4215	106.52	0.8247	4.32	1/982	1/7748
SNV	Breast	TBC1D8B_Q631R_1	HLA-A02:03	RLTEHMTDM	0.9592	0.6797	0.7489	60.74	0.6661	4.32	1/982	1/7748
SNV	Breast	CD79A_E148K_10	HLA-A30:01	GTKNRIITAK	0.9982	0.7701	1.0631	432.88	0.1601	130.44	1/982	1/7748
SNV	Breast	CD79A_E148K_4	HLA-C03:04	ITAKGIILL	0.9984	0.9754	0.1885	81.72	0.2535	130.44	1/982	1/7748
SNV	Breast	CEP83_L158V_9	HLA-A30:01	KLRYEHTFV	0.9917	0.9055	0.2024	333.38	0.1256	5.19	1/982	1/7748
SNV	Breast	COQ2_R250T_8	HLA-C03:04	ITYPLMKTI	0.9823	0.9798	0.7013	97.86	0.2722	8.26	1/982	1/7748
SNV	Breast	DIEXF_G681D_5	HLA-C03:04	YTIKDIRNL	0.9996	0.9906	0.1404	15.61	0.1161	6	1/982	1/7748
SNV	Breast	DNASE1L2_Q162E_4	HLA-C03:04	AAAENLVLI	0.9953	0.9871	0.1008	17.07	0.125	8.95	1/982	1/7748
SNV	Breast	HIST2H2BE_F71L_6	HLA-C03:04	FVNDILERI	0.9977	0.9894	0.4431	139.77	0.3122	150.79	1/982	4/7748
SNV	Breast	HIVEP1_E149K_3	HLA-A30:01	RSKGADPAK	0.9976	0.8486	0.0668	23.19	0.0134	6.5	1/982	1/7748
SNV	Breast	HTT_M1069V_4	HLA-C03:04	MATVILTLL	0.9984	0.9886	0.1638	145.03	0.3173	14.36	1/982	1/7748
SNV	Breast	MFSD12_S148Y_1	HLA-B15:10	YHLSLIPEL	0.9986	0.8067	0.0153	43.56	0.0084	24.7	1/982	1/7748
SNV	Breast	MFSD12_S148Y_7	HLA-C03:04	WASTQIYHL	0.9997	0.9731	0.2437	479.25	0.4958	24.7	1/982	1/7748
SNV	Breast	MSI1_G206E_8	HLA-A30:01	RSRVMPYEM	0.9823	0.901	0.1809	169.94	0.0795	5.44	1/982	1/7748
SNV	Breast	MSI1_G206E_4	HLA-C03:04	MPYEMDAFM	0.9875	0.9925	1.8618	452.21	0.4864	5.44	1/982	1/7748
SNV	Breast	P2RX2_I199M_9	HLA-C03:04	MAPNFTILM	0.9987	0.9891	0.033	21.69	0.1449	3.46	1/982	1/7748
SNV	Breast	PDZD7_E506K_9	HLA-A30:01	KTYPRLDIK	0.9988	0.63	0.0056	12.04	0.009	3.25	1/982	1/7748
SNV	Breast	PDZD7_E506K_9	HLA-A30:01	KTYPRLDIKK	0.9985	0.6525	0.3886	92.59	0.0446	3.25	1/982	1/7748
SNV	Breast	PLA2G15_R238H_7	HLA-C03:04	GVAKTLHVL	0.9939	0.9796	0.9852	460.9	0.4894	34.42	1/982	1/7748
SNV	Breast	RND3_D160H_4	HLA-C03:04	VSYHQGANM	0.9976	0.9916	0.2131	458.72	0.4887	29.48	1/982	1/7748
SNV	Breast	RNF103_P417L_7	HLA-C03:04	MFYSSHLAL	0.9356	0.9854	1.7902	224.9	0.3774	22.66	1/982	1/7748
SNV	Breast	RNF103_P417L_1	HLA-C03:04	LALFLSTYL	0.997	0.989	0.5072	259.37	0.3969	22.66	1/982	1/7748
SNV	Breast	RRP12_E73K_3	HLA-A30:01	KSKAPETPM	0.9799	0.7745	0.2561	198.8	0.0884	11.44	1/982	2/7748
SNV	Breast	SLC30A5_D202N_1	HLA-B15:10	NHKGGVLLL	0.9206	0.5933	0.0118	117.42	0.0123	27.79	1/982	1/7748
SNV	Breast	SLC30A5_D202N_3	HLA-C03:04	VANHKGGVL	0.9978	0.9896	0.1565	58.04	0.2175	27.79	1/982	1/7748
SNV	Breast	TM7SF3_G439A_3	HLA-C03:04	VIASYSVVL	0.9979	0.9835	0.3901	23.87	0.1521	23.84	1/982	1/7748
SNV	Breast	TM7SF3_G439A_1	HLA-C03:04	ASYSVVLAI	0.9699	0.9843	0.1638	56.26	0.2142	23.84	1/982	1/7748
SNV	Breast	TOP1MT_R376T_5	HLA-A30:01	RYYNTVPVEK	0.972	0.9318	1.1278	318.6	0.1222	14.66	1/982	1/7748
SNV	Breast	TROVE2_E221Q_6	HLA-A30:01	KALSVQTEK	0.9924	0.7697	0.0306	133.18	0.0675	8.27	1/982	1/7748
SNV	Breast	TULP3_Q198E_5	HLA-C03:04	SPAPEGVTV	0.7452	0.9873	1.0155	351.48	0.4456	24.5	1/982	1/7748
SNV	Breast	VPS13B_F2571L_1	HLA-C03:04	LSIFGQMAV	0.9819	0.9938	0.489	419.56	0.4742	4.97	1/982	1/7748
SNV	Breast	ZFHX3_R1426T_5	HLA-B15:10	YHVITAATM	0.992	0.5593	0.0176	39.11	0.0082	4.91	1/982	1/7748
SNV	Breast	CD22_R433Q_4	HLA-B54:01	MPIQEGDTV	0.9979	0.6225	0.0451	10.98	0.0253	4.66	1/982	1/7748
SNV	Breast	DPP8_E363K_1	HLA-A02:06	KLIQPFEIL	0.974	0.826	0.524	84.58	0.2957	18.26	1/982	1/7748
SNV	Breast	KARS_E202D_6	HLA-A02:06	SIIPYDITL	0.9519	0.5971	0.4236	3.59	0.0481	80.81	1/982	1/7748
SNV	Breast	KARS_E202D_6	HLA-A02:06	SIIPYDITLL	0.9083	0.6633	0.841	181.53	0.3965	80.81	1/982	1/7748
SNV	Breast	KARS_E202D_6	HLA-C01:02	SIIPYDITL	0.6179	0.8917	0.1826	255.86	0.0214	80.81	1/982	1/7748
SNV	Breast	LDOC1L_R182W_8	HLA-A11:01	RTYKSPLWH	0.9766	0.5502	0.3571	269.39	0.4551	57.28	1/982	2/7748
SNV	Breast	LYST_P737S_9	HLA-A02:06	KLYNYIFNS	0.9812	0.603	1.3646	254.04	0.4535	8.4	1/982	1/7748
SNV	Breast	LYST_P737S_9	HLA-A02:06	KLYNYIFNSV	0.9983	0.6162	0.2086	219.64	0.4284	8.4	1/982	1/7748
SNV	Breast	LYST_P737S_1	HLA-C01:02	SVLQRGVEL	0.8566	0.9322	0.2305	447.73	0.0457	8.4	1/982	1/7748
SNV	Breast	MLPH_I298M_8	HLA-A11:01	AALGSNVMR	0.9845	0.5501	0.5423	151.2	0.3695	432.93	1/982	1/7748
SNV	Breast	MLPH_I298M_1	HLA-C06:02	MRNEQLPLQY	0.7907	0.9958	0.5014	466.73	0.2004	432.93	1/982	1/7748
SNV	Breast	NCR3LG1_P418L_2	HLA-A02:06	VLDAPILPV	0.9976	0.817	0.1545	17.81	0.1565	2.23	1/982	1/7748
SNV	Breast	NCR3LG1_P418L_3	HLA-A02:06	AVLDAPILPV	0.9974	0.8284	0.231	10.65	0.125	2.23	1/982	1/7748
SNV	Breast	NEK11_S251Y_8	HLA-A02:06	IVEGDTPYL	0.7501	0.5746	1.4366	184.26	0.3985	8.4	1/982	1/7748
SNV	Breast	NEK11_S251Y_9	HLA-A02:06	KIVEGDTPYL	0.9636	0.5643	0.7325	71.48	0.2784	8.4	1/982	1/7748
SNV	Breast	PGM2_S152L_9	HLA-B54:01	TPFVPFTVL	0.8745	0.6261	0.0536	15.61	0.031	24.28	1/982	1/7748
SNV	Breast	POU6F1_E254K_8	HLA-B54:01	LPQPTAAKA	0.9921	0.7548	0.0261	7.17	0.0159	6.12	1/982	1/7748
SNV	Breast	POU6F1_E254K_8	HLA-B54:01	LPQPTAAKAA	0.9856	0.8311	0.0961	115.21	0.1114	6.12	1/982	1/7748
SNV	Breast	PPL_V993M_2	HLA-A02:06	YMVKEVLRI	0.9919	0.705	0.0889	20.48	0.1658	26.67	1/982	1/7748
SNV	Breast	RAD17_E87K_4	HLA-A02:06	YLSKNEPWV	0.9778	0.817	0.0376	36.8	0.2145	24.36	1/982	1/7748
SNV	Breast	SLC8A1_L371F_8	HLA-C06:02	YRIQATRF	0.9678	0.9961	0.5623	264.55	0.1477	1.64	1/982	1/7748
SNV	Breast	SPON1_S264L_7	HLA-A02:06	QVAELGLPV	0.9894	0.5829	0.575	147.2	0.3685	42.7	1/982	1/7748
SNV	Breast	STAT2_D843N_5	HLA-C06:02	HFYTNGPLM	0.6922	0.9829	0.4729	312.33	0.1617	81.68	1/982	1/7748
SNV	Breast	STK19_R159Q_3	HLA-B54:01	FPQGLFEDA	0.9962	0.782	0.0182	32.87	0.0524	13.4	1/982	1/7748
SNV	Breast	THBS4_D151H_4	HLA-A02:06	IQVHSVHNL	0.8864	0.7062	0.4405	76.22	0.285	80.26	1/982	1/7748
SNV	Breast	THBS4_D151H_8	HLA-A02:06	YLDCIQVHSV	0.9989	0.7254	0.4056	470.13	0.5651	80.26	1/982	1/7748
SNV	Breast	TRIP10_E6Q_7	HLA-A02:06	TQLWDQFEV	0.9639	0.8397	0.4056	30.03	0.1961	32.4	1/982	1/7748
SNV	Breast	TRIP10_E6Q_6	HLA-A02:06	QLWDQFEVL	0.9936	0.8304	0.1486	15.66	0.1481	32.4	1/982	1/7748
SNV	Breast	VPS13B_H68Y_8	HLA-A02:06	HIHELRIYV	0.9908	0.5307	0.3736	375.15	0.5225	9.01	1/982	1/7748
SNV	Breast	ZFHX4_M2538I_1	HLA-C01:02	IIFDPNNPL	0.8117	0.8921	0.032	412.4	0.0411	2.47	1/982	1/7748
SNV	Breast	ZGPAT_E272K_9	HLA-A11:01	GILPPLRTK	0.9982	0.5443	0.3093	4	0.0478	8.86	1/982	1/7748
SNV	Breast	FAM35A_D556N_7	HLA-B18:01	SEVVLQNLL	0.7866	0.8313	0.1172	388.59	0.2438	24.8	1/982	1/7748
SNV	Breast	GSK3B_P286R_2	HLA-C07:01	NRNYTEFKF	0.9984	0.7018	0.1809	303.22	0.1383	25.74	1/982	1/7748
SNV	Breast	NCKAP5L_G401E_5	HLA-B18:01	SEGQEPLPF	0.9491	0.9608	0.0838	321.73	0.2309	19.12	1/982	1/7748
SNV	Breast	NCKAP5L_G401E_2	HLA-B18:01	QEPLPFLSM	0.9032	0.9508	0.2281	160.41	0.1859	19.12	1/982	1/7748
SNV	Breast	NDUFS3_P49R_1	HLA-C07:01	RRNDVAHKQL	0.9961	0.7115	0.0851	386.47	0.1565	50.6	1/982	1/7748
SNV	Breast	RARRES1_V202L_8	HLA-A24:02	AFLGSSYLMW	0.9964	0.6694	0.4435	79.21	0.4201	27.28	1/982	1/7748
SNV	Breast	RARRES1_V202L_1	HLA-A02:01	LMWEMTTQV	0.9983	0.5815	0.0051	1.92	0.0429	27.28	1/982	1/7748
SNV	Breast	RARRES1_V202L_2	HLA-A02:01	YLMWEMTTQV	0.9988	0.7171	0.0416	3.04	0.0666	27.28	1/982	1/7748
SNV	Breast	ACE_F329L_9	HLA-C12:03	HMFRVAEEL	0.9942	0.9707	0.2471	243.43	0.8068	54.54	1/982	1/7748
SNV	Breast	ACE_F329L_5	HLA-C12:03	VAEELFTSL	0.9852	0.9777	0.1878	35.33	0.3079	54.54	1/982	1/7748
SNV	Breast	ACVR1B_T300A_8	HLA-C12:03	YLNRYTVAI	0.9884	0.9269	1.1363	130.89	0.5941	54.25	1/982	1/7748
SNV	Breast	ACVR1B_T300A_2	HLA-C12:03	VAIEGMIKL	0.9977	0.9851	0.0415	2.58	0.0217	54.25	1/982	1/7748
SNV	Breast	C1orf43_P124S_1	HLA-C07:01	SRSLMGKNF	0.9933	0.6769	0.2095	361.65	0.1519	388.71	1/982	1/7748
SNV	Breast	COL16A1_E1352K_9	HLA-A11:01	GTDGAAGKK	0.9927	0.7451	0.6756	128.1	0.3474	9.06	1/982	1/7748
SNV	Breast	ELL2_Q542H_7	HLA-C12:03	VSYEQRHNY	0.517	0.9359	0.1244	6.84	0.0869	36.67	1/982	1/7748
SNV	Breast	HAUS5_R308Q_5	HLA-C12:03	LVSQQSTLL	0.9097	0.9525	0.6284	295.44	0.873	26.07	1/982	1/7748
SNV	Breast	IREB2_T824M_6	HLA-B35:03	FPSGQMLDV	0.9552	0.7189	0.0849	233.68	0.1394	33.2	1/982	1/7748
SNV	Breast	KCNQ3_F343I_8	HLA-C12:03	FSLIGVSIF	0.9076	0.9714	0.181	54.24	0.3824	3.99	1/982	1/7748
SNV	Breast	KCNQ3_F343I_2	HLA-C12:03	SIFALPAGI	0.8664	0.9862	1.473	158.32	0.6533	3.99	1/982	1/7748
SNV	Breast	PREPL_D330H_5	HLA-C12:03	RTAAHTPAI	0.9691	0.9684	0.2434	11.65	0.1402	44.13	1/982	1/7748
SNV	Breast	PREPL_D330H_4	HLA-C12:03	TAAHTPAIM	0.926	0.9812	0.055	64.64	0.4174	44.13	1/982	1/7748
SNV	Breast	RELN_C1440F_8	HLA-C12:03	YTAAQGTFV	0.7252	0.9901	0.4673	73.5	0.4474	68.25	1/982	1/7748
SNV	Breast	RYR1_E926K_1	HLA-C12:03	KTLKTLLAL	0.9161	0.9739	0.252	67.68	0.4281	1.33	1/982	1/7748
SNV	Breast	SLC25A32_R311K_9	HLA-A11:01	VSHFLLDLK	0.9966	0.537	0.0772	390.77	0.516	26.25	1/982	1/7748
SNV	Breast	SLCO4C1_H110Y_10	HLA-A01:01	CNTPGGFLLY	0.8044	0.5257	0.3884	143.95	0.4412	6.89	1/982	1/7748
SNV	Breast	TPSG1_P310A_2	HLA-C12:03	HASADGTPF	0.6138	0.9702	0.1365	163.64	0.6638	3.11	1/982	1/7748
SNV	Breast	TSEN2_E319Q_2	HLA-C12:03	YQKEPLTIV	0.9948	0.984	0.963	100.5	0.5235	12.95	1/982	1/7748
SNV	Breast	MUC1_V368F_10	HLA-C06:02	SRYNLTISDF	0.7887	0.9918	0.225	348.43	0.1719	208.13	1/982	1/7748
SNV	Breast	PRDM10_V43F_3	HLA-B13:02	DQFRPPQQV	0.9135	0.9431	0.1166	476.87	0.152	7.32	1/982	1/7748
SNV	Breast	RRAGC_K333R_7	HLA-C06:02	YLKEVTRFL	0.9755	0.9922	0.5703	420.45	0.1901	23.44	1/982	1/7748
SNV	Breast	XPOT_S577F_9	HLA-A24:02	RIQDLLELF	0.9893	0.5362	0.416	98.91	0.4512	83.13	1/982	1/7748
SNV	Breast	ANP32E_R59Q_2	HLA-B13:02	AQLPSLNKL	0.8489	0.5942	0.067	197.02	0.0765	99.31	1/982	1/7748
SNV	Breast	COPS3_V266A_9	HLA-B35:01	NAYHELAQAY	0.9953	0.9077	0.2574	11.76	0.1418	49.83	1/982	1/7748
SNV	Breast	FAT4_V3389F_3	HLA-B13:02	DEFTVNVTV	0.9866	0.6421	0.016	259.49	0.0958	2.84	1/982	1/7748
SNV	Breast	FMO1_F496L_7	HLA-B13:02	TQWDRTLKV	0.9221	0.7404	0.0969	52.95	0.0253	1.63	1/982	1/7748
SNV	Breast	HS2ST1_L25R_1	HLA-A30:01	RFLENQIQK	0.8898	0.7955	0.05	243.55	0.1041	19.73	1/982	1/7748
SNV	Breast	HS2ST1_L25R_9	HLA-A11:01	VVAFAVAMR	0.9892	0.5147	0.3454	258.76	0.4487	19.73	1/982	1/7748
SNV	Breast	HS2ST1_L25R_8	HLA-B35:01	VAFAVAMRF	0.9915	0.9539	0.0853	33.7	0.2129	19.73	1/982	1/7748
SNV	Breast	KIAA2022_M59I_8	HLA-B35:01	VAQKETLIY	0.9547	0.8916	0.11	11.61	0.1407	4.57	1/982	1/7748
SNV	Breast	KIAA2022_M59I_10	HLA-B35:01	TPVAQKETLIY	0.9962	0.8368	0.4562	331.28	0.4371	4.57	1/982	1/7748
SNV	Breast	MAN2A1_G249V_9	HLA-B13:02	GQLEIVTGV	0.9679	0.6308	0.1166	31.93	0.0161	33.78	1/982	1/7748
SNV	Breast	PDE1B_S4F_8	HLA-B35:01	FPRSPPEML	0.9931	0.8638	0.2064	15.33	0.16	2.4	1/982	1/7748
SNV	Breast	SIGLEC7_L204R_9	HLA-A30:01	TTRSSVLTR	0.9894	0.8341	0.0668	454.68	0.1655	2.49	1/982	1/7748
SNV	Breast	SLC20A1_A114S_7	HLA-B35:01	SAMFGSSVW	0.9797	0.9364	0.274	106.06	0.3134	41.54	1/982	1/7748
SNV	Breast	SLC25A53_V51I_6	HLA-B35:01	FPIYKIVF	0.9982	0.8066	0.8611	160.43	0.3558	1.52	1/982	1/7748
SNV	Breast	KCNK2_H388Y_8	HLA-C07:01	RRTLSVNYL	0.9972	0.5397	0.0406	77.99	0.0782	6.74	1/982	1/7748
SNV	Breast	TRIM11_G328S_5	HLA-C04:01	RFDPSPCVL	0.9995	0.9194	0.0008	2.65	0.007	16.67	1/982	1/7748
SNV	Breast	CDC45_L561F_6	HLA-C07:02	KFLDAFISL	0.744	0.963	0.1449	16.3	0.0691	19.2	1/982	1/7748
SNV	Breast	CEP162_N1148T_7	HLA-C12:02	SSKGNATSF	0.9729	0.9767	0.1134	268.43	0.3414	7.72	1/982	1/7748
SNV	Breast	ENPP5_L83F_8	HLA-A24:02	HYTLVTGFF	0.9897	0.5367	0.0343	6.8	0.178	35.93	1/982	1/7748
SNV	Breast	ENPP5_L83F_9	HLA-C07:02	NHYTLVTGF	0.6449	0.963	0.4255	240.13	0.2914	35.93	1/982	1/7748
SNV	Breast	EXOC2_S432I_1	HLA-A24:02	IFQSGRDDTW	0.9746	0.5341	0.6199	380.11	0.6489	43.24	1/982	1/7748
SNV	Breast	GALNT11_M100V_7	HLA-C12:02	FSSELGVIF	0.9871	0.9265	0.0306	22.85	0.0617	17.99	1/982	1/7748
SNV	Breast	GMDS_V219L_9	HLA-B07:02	SPRRGANFL	0.9997	0.6808	0.0073	1.27	0.0121	82.86	1/982	1/7748
SNV	Breast	ISM1_E89K_1	HLA-A11:01	KTGHPSLQR	0.9945	0.5763	0.1432	29.67	0.1754	13.91	1/982	1/7748
SNV	Breast	KLC4_S74F_3	HLA-C07:02	RRFMENIEL	0.9491	0.9668	0.0638	14.39	0.0636	67.54	1/982	1/7748
SNV	Breast	LRP1_N4109S_5	HLA-C12:02	VTYISNRVF	0.6966	0.9652	0.4813	154.25	0.2356	101.01	1/982	1/7748
SNV	Breast	LRRC40_P305S_3	HLA-C12:02	SVSDEIILL	0.9341	0.9561	0.1228	182.32	0.2621	17.55	1/982	1/7748
SNV	Breast	PDP1_F209L_3	HLA-C07:02	LYLNSLRTY	0.5008	0.7182	0.3336	246.56	0.2945	29.9	1/982	1/7748
SNV	Breast	PPIE_T229M_2	HLA-C12:02	HMGPGLLSM	0.9959	0.9907	0.1325	54.08	0.1159	13.47	1/982	1/7748
SNV	Breast	PRKAA2_E64D_3	HLA-C07:02	KRDIQNLKL	0.8712	0.8608	0.1481	379.88	0.3569	1.31	1/982	1/7748
SNV	Breast	SCARA3_V381M_1	HLA-C07:02	MRLSCTLGF	0.9122	0.9784	0.0365	85.78	0.1793	141.95	1/982	1/7748
SNV	Breast	SETD6_A218P_6	HLA-C07:02	YHQLVPLVM	0.9108	0.9563	0.2126	105.44	0.1994	8.84	1/982	1/7748
SNV	Breast	SETD6_A218P_4	HLA-C12:02	QLVPLVMAY	0.7595	0.9872	0.444	111.44	0.1937	8.84	1/982	1/7748
SNV	Breast	SUPT3H_I231V_6	HLA-C12:02	VVAMEVLAY	0.7285	0.9529	0.7204	272.57	0.3445	14.5	1/982	1/7748
SNV	Breast	SUPT3H_I231V_5	HLA-C12:02	VAMEVLAYL	0.9944	0.9755	0.0254	14.53	0.0417	14.5	1/982	1/7748
SNV	Breast	PSTPIP1_P336R_5	HLA-A68:01	ETLTRTPER	0.9994	0.667	0.203	13.99	0.1459	2.27	1/982	1/7748
SNV	Breast	CX3CR1_D67H_7	HLA-B35:01	KPKSVTHIY	0.9596	0.6385	0.0594	8.02	0.1145	21.81	1/982	1/7748
SNV	Breast	GDAP2_L371V_6	HLA-C04:01	DMDKAVLYF	0.999	0.6548	0.2075	71.08	0.0645	8.02	1/982	1/7748
SNV	Breast	NRROS_T254M_1	HLA-C04:01	MLDLSHNQL	0.9999	0.9052	0.0194	56.68	0.0583	9.83	1/982	1/7748
SNV	Breast	PFAS_R417Q_6	HLA-B35:01	LPDGQQREW	0.9854	0.8684	0.6394	48.9	0.2428	18.3	1/982	1/7748
SNV	Breast	PIK3CA_C420R_6	HLA-B44:02	AKEEHRPLAW	0.7539	0.5347	0.8605	5.21	0.0828	16.91	2/982	4/7748
SNV	Breast	SEMA3D_H142D_7	HLA-B35:01	QPYNKTDIY	0.9833	0.8138	0.0578	1.59	0.0255	1.91	1/982	1/7748
SNV	Breast	TSHZ2_H119R_9	HLA-A68:01	HVRLPNEAR	0.9882	0.5709	0.4509	28.84	0.2138	14.3	1/982	1/7748
SNV	Breast	TSHZ2_H119R_6	HLA-B35:01	LPNEARNCM	0.9814	0.8075	0.1646	4.56	0.0851	14.3	1/982	1/7748
SNV	Breast	UNC45A_R836W_1	HLA-B35:01	WAAAGGLAM	0.9734	0.8701	0.0265	2.66	0.0518	43.97	1/982	1/7748
SNV	Breast	UNC45A_R836W_9	HLA-B44:02	GEDDELLQW	0.9985	0.7131	0.0324	3.01	0.053	43.97	1/982	2/7748
SNV	Breast	UNC45A_R836W_10	HLA-B44:02	SGEDDELLQW	0.9058	0.76	1.5068	5.7	0.0866	43.97	1/982	2/7748
SNV	Breast	ACTG1_P243A_2	HLA-C17:01	LADGQVITI	0.92	0.9677	0.0333	25.15	0.0776	3320	1/982	1/7748
SNV	Breast	CMTR1_G366C_6	HLA-A02:01	LMADGCFSV	0.9983	0.564	0.0022	2.73	0.0591	45.93	1/982	1/7748
SNV	Breast	PTCH1_P532T_8	HLA-B08:01	TGQNKRITF	0.9745	0.5499	0.5249	220.73	0.2415	1.71	1/982	1/7748
SNV	Breast	AIM1_D414N_3	HLA-C03:04	AANSKSLVL	0.9997	0.9814	0.061	6.3	0.0587	53.9	1/982	1/7748
SNV	Breast	ALG13_Q1110E_8	HLA-C03:04	TAYGGSSEI	0.998	0.99	0.0399	2.47	0.0258	6.03	1/982	1/7748
SNV	Breast	ASB1_H246P_4	HLA-B15:01	VLRPGCEAAF	0.9998	0.9465	0.2215	24.47	0.1558	14.36	1/982	1/7748
SNV	Breast	BLOC1S5_M149L_9	HLA-A02:01	HMLQWDNFL	0.9594	0.6966	0.1554	80.07	0.3629	27.46	1/982	1/7748
SNV	Breast	CACNA2D1_F1003I_4	HLA-C07:02	SRIIHGEKL	0.8256	0.933	0.0573	19.36	0.0757	1.38	1/982	1/7748
SNV	Breast	CAMSAP2_P1013A_7	HLA-C03:04	RSVDSLARL	0.9991	0.98	0.1885	106.06	0.2806	61.37	1/982	1/7748
SNV	Breast	CELSR2_V1426F_5	HLA-A24:02	IQEQFQLTF	0.9502	0.7582	0.7484	471.17	0.6867	40.7	1/982	1/7748
SNV	Breast	CELSR2_V1426F_5	HLA-B15:01	IQEQFQLTF	0.9956	0.8959	0.2094	69.71	0.2532	40.7	1/982	1/7748
SNV	Breast	DDR2_S674Y_1	HLA-C03:04	YSSSDVRTV	0.9904	0.9671	0.1475	114.09	0.2882	40.49	1/982	1/7748
SNV	Breast	DYNC2H1_Q3823L_2	HLA-B15:01	LLSSLKITY	0.9995	0.762	0.0537	15.89	0.1244	17.08	1/982	1/7748
SNV	Breast	ESAM_S312F_9	HLA-B15:01	ISKNGTLSF	0.9996	0.9237	0.0756	5.34	0.0538	10.51	1/982	1/7748
SNV	Breast	ESAM_S312F_10	HLA-B15:01	TISKNGTLSF	0.9998	0.9283	0.6657	163.27	0.3448	10.51	1/982	1/7748
SNV	Breast	FBXL4_A139G_5	HLA-C07:02	VYPTGVHVL	0.5311	0.9507	0.0969	21.13	0.0789	30.59	1/982	1/7748
SNV	Breast	FBXL4_A139G_6	HLA-C03:04	QVYPTGVHV	0.9201	0.983	0.4683	64.87	0.2292	30.59	1/982	1/7748
SNV	Breast	GFPT2_S336A_7	HLA-A24:02	IFEQPEAVF	0.9873	0.5357	0.4274	7.91	0.1957	14.59	1/982	1/7748
SNV	Breast	GFRA1_D350G_8	HLA-C03:04	QAFGNGSGV	0.9626	0.9885	0.5072	254.35	0.3943	1.36	1/982	1/7748
SNV	Breast	GFRA1_D350G_6	HLA-C03:04	FGNGSGVTV	0.965	0.9904	0.4136	28.34	0.1624	1.36	1/982	1/7748
SNV	Breast	HLA-F_A232G_4	HLA-A24:02	FYPGEITLTW	0.9995	0.5005	0.1021	1.37	0.0183	110.42	1/982	1/7748
SNV	Breast	HLA-F_A232G_5	HLA-A24:02	GFYPGEITLTW	0.9998	0.6424	0.3815	41.54	0.3463	110.42	1/982	1/7748
SNV	Breast	IGSF21_V101L_7	HLA-C03:04	LVYQSTLRL	0.9968	0.9804	0.5931	12.39	0.096	4.32	1/982	1/7748
SNV	Breast	INTS3_E624K_8	HLA-A02:01	VLASCLQKL	0.9866	0.6875	0.1371	426.63	0.6404	59.04	1/982	1/7748
SNV	Breast	INTS3_E624K_3	HLA-B15:01	LQKLFKAHF	0.9981	0.8798	0.037	100.45	0.2869	59.04	1/982	1/7748
SNV	Breast	INTS3_L671V_1	HLA-A02:01	VLLDLLSEL	0.9974	0.6672	0.0731	1.51	0.0227	59.04	1/982	1/7748
SNV	Breast	INTS3_L671V_2	HLA-A02:01	SVLLDLLSEL	0.9778	0.5681	1.1118	53.48	0.3111	59.04	1/982	1/7748
SNV	Breast	INTS3_L671V_1	HLA-C03:04	VLLDLLSEL	0.9897	0.9844	0.585	447.32	0.4846	59.04	1/982	1/7748
SNV	Breast	IP6K3_F50L_2	HLA-A02:01	RLYESLPLA	0.9984	0.5751	0.053	1.72	0.0362	8.1	1/982	1/7748
SNV	Breast	IP6K3_F50L_2	HLA-A02:01	RLYESLPLAM	0.9955	0.5549	0.6165	50.59	0.3039	8.1	1/982	1/7748
SNV	Breast	IP6K3_F50L_1	HLA-C07:02	LYESLPLAM	0.9388	0.8887	0.0756	212.78	0.2772	8.1	1/982	1/7748
SNV	Breast	LSR_P544R_2	HLA-C07:02	FRRSRDPHY	0.607	0.8626	0.1834	264.66	0.3036	304.22	1/982	1/7748
SNV	Breast	MTCH1_I357T_6	HLA-A24:02	VFKSWTHCW	0.9866	0.7803	0.1941	250.91	0.5809	254.96	1/982	1/7748
SNV	Breast	MYC_E416K_5	HLA-A02:01	KLISKEDLL	0.9833	0.8243	0.488	139.14	0.4452	206.79	1/982	1/7748
SNV	Breast	MYO7B_L597F_9	HLA-C07:02	LREIFNLEF	0.8983	0.9515	0.1256	177.38	0.2558	1.39	1/982	1/7748
SNV	Breast	NDRG1_G245A_5	HLA-B07:02	RPMPATHTV	0.999	0.7033	0.0019	1.22	0.0099	92.65	1/982	1/7748
SNV	Breast	NDRG1_G245A_5	HLA-B07:02	RPMPATHTVT	0.9936	0.6751	0.1759	139.87	0.2907	92.65	1/982	1/7748
SNV	Breast	NDRG1_G245A_5	HLA-B07:02	RPMPATHTVTL	0.9999	0.6907	0.0796	1.95	0.0317	92.65	1/982	1/7748
SNV	Breast	NDRG1_G245A_5	HLA-C03:04	RPMPATHTV	0.6778	0.99	0.8768	29.63	0.1651	92.65	1/982	1/7748
SNV	Breast	NDRG1_G245A_3	HLA-C03:04	MPATHTVTL	0.9982	0.9906	0.3901	16.06	0.1189	92.65	1/982	1/7748
SNV	Breast	NHLRC1_V180F_7	HLA-C07:02	IRYPVDFTI	0.8444	0.8519	0.1108	9.12	0.0438	51.28	1/982	1/7748
SNV	Breast	PEBP1_G147V_2	HLA-B15:01	RVKFKVASF	0.9972	0.9283	0.0774	10.17	0.0966	510.03	1/982	1/7748
SNV	Breast	PEG3_I1531M_7	HLA-B15:01	KTHASMMIF	0.9915	0.847	0.1883	93.26	0.2801	120.7	1/982	1/7748
SNV	Breast	PEG3_I1531M_1	HLA-B15:01	MIFEPANAF	0.9987	0.9497	0.0061	2.87	0.0253	120.7	1/982	1/7748
SNV	Breast	PEG3_I1531M_2	HLA-B15:01	MMIFEPANAF	0.9996	0.9603	0.151	16.51	0.127	120.7	1/982	1/7748
SNV	Breast	PEG3_I1531M_1	HLA-C07:02	MIFEPANAF	0.8566	0.9585	0.4319	133.61	0.2248	120.7	1/982	1/7748
SNV	Breast	PEG3_I1531M_1	HLA-C03:04	MIFEPANAF	0.9968	0.9913	0.0494	4.53	0.0452	120.7	1/982	1/7748
SNV	Breast	PPIP5K2_K1160N_4	HLA-B07:02	VPRNTAEI	0.9992	0.5451	0.548	172.29	0.3081	15.68	1/982	1/7748
SNV	Breast	PPP2CB_D77Y_9	HLA-C07:02	FRIGGKSPY	0.8253	0.9309	0.0262	57.01	0.1446	113.62	1/982	1/7748
SNV	Breast	RABGGTB_F74Y_9	HLA-B15:01	MNREEILAY	0.9986	0.9514	0.1845	29.76	0.1701	65.09	1/982	1/7748
SNV	Breast	RABGGTB_F74Y_10	HLA-B15:01	RMNREEILAY	0.9999	0.9592	0.1944	3.03	0.0278	65.09	1/982	1/7748
SNV	Breast	RBM6_S61L_2	HLA-A02:01	HLGPPFANV	0.9957	0.6591	0.3516	3.94	0.0815	37.71	1/982	1/7748
SNV	Breast	RBM6_S61L_9	HLA-B07:02	LPFDFQGHL	0.9886	0.6169	0.1006	59.96	0.2212	37.71	1/982	1/7748
SNV	Breast	RPL27_K117T_8	HLA-C07:02	ARREAKVTF	0.8411	0.9576	0.1256	26.23	0.0907	741.36	1/982	1/7748
SNV	Breast	SGK223_S1399L_5	HLA-A02:01	ALLQLLKLL	0.9452	0.5973	0.5313	170.72	0.4802	22.53	1/982	1/7748
SNV	Breast	SGK223_S1399L_2	HLA-A02:01	QLLKLLQLL	0.9684	0.5703	0.3016	316.98	0.5816	22.53	3/982	3/7748
SNV	Breast	SGK223_S1399L_2	HLA-A02:01	QLLKLLQLL	0.9684	0.5703	0.3016	316.98	0.5816	22.53	3/982	3/7748
SNV	Breast	SGK223_S1399L_2	HLA-A02:01	QLLKLLQLL	0.9684	0.5703	0.3016	316.98	0.5816	22.53	3/982	3/7748
SNV	Breast	SNX8_Y229H_6	HLA-B15:01	LIRNIHNSF	0.9989	0.8661	0.1024	14.51	0.119	31.66	1/982	1/7748
SNV	Breast	ST8SIA6_K295N_5	HLA-B15:01	KARQNVLFF	0.9841	0.7309	0.2386	92.94	0.2797	13.32	1/982	1/7748
SNV	Breast	STX12_Q118H_7	HLA-C03:04	AALNNFHAV	0.9934	0.9923	0.1027	18.43	0.1314	54.43	1/982	1/7748
SNV	Breast	TP53_C176F_9	HLA-B15:01	HMTEVVRRF	0.9944	0.8762	0.2634	26.91	0.1628	196.35	3/982	5/7748
SNV	Breast	TPD52L1_K123R_3	HLA-B15:01	ISRKFGDMSY	0.9993	0.8959	0.8445	232.54	0.391	17.21	1/982	1/7748
SNV	Breast	TPD52L1_K123R_2	HLA-C07:02	SRKFGDMSY	0.7987	0.9333	0.2402	136.58	0.2272	17.21	1/982	1/7748
SNV	Breast	TSC2_N425Y_10	HLA-B15:01	DQRPESSLLY	0.9988	0.8365	0.7204	479.61	0.5124	17.34	1/982	1/7748
SNV	Breast	TSC2_N425Y_9	HLA-C07:02	QRPESSLLY	0.9668	0.925	0.0926	123.81	0.2166	17.34	1/982	1/7748
SNV	Breast	USP34_A1446P_8	HLA-A02:01	YALEIIEPL	0.9871	0.6021	0.1881	192.57	0.5008	46.86	1/982	1/7748
SNV	Breast	USP34_A1446P_8	HLA-C03:04	YALEIIEPL	0.9998	0.9897	0.0037	2.24	0.0213	46.86	1/982	1/7748
SNV	Breast	ZNF512_K250N_5	HLA-C07:02	KRLGNLRCM	0.9077	0.9597	0.1834	468.05	0.3877	3.01	1/982	1/7748
SNV	Breast	ZNF727_R192T_1	HLA-B15:01	TIHTADRSY	0.9965	0.8023	0.2722	13.33	0.114	6.92	1/982	1/7748
SNV	Breast	ZNF727_R192T_2	HLA-B15:01	KTIHTADRSY	0.9985	0.7385	0.8814	153.78	0.337	6.92	1/982	1/7748
SNV	Breast	ABCB9_S325L_6	HLA-A02:01	FMFSLLWQL	0.9872	0.618	0.0015	8.89	0.1493	1.52	1/982	1/7748
SNV	Breast	ABCB9_S325L_3	HLA-A02:01	SLLWQLSLV	0.9778	0.8288	0.0169	38.07	0.2752	1.52	1/982	1/7748
SNV	Breast	ABCB9_S325L_4	HLA-C12:03	FSLLWQLSL	0.9582	0.9957	0.1151	338.12	0.9211	1.52	1/982	1/7748
SNV	Breast	ACIN1_E177K_3	HLA-B35:03	HPKGVASLL	0.9241	0.881	0.0447	49.22	0.0766	75.47	1/982	1/7748
SNV	Breast	ADAMTS9_I845F_9	HLA-B27:05	ERINSTDRF	0.9968	0.5963	0.7171	334.84	0.5491	3.46	1/982	1/7748
SNV	Breast	ADAMTS9_I845F_3	HLA-B27:05	DRFEQELLL	0.9979	0.8895	0.252	43.44	0.3184	3.46	1/982	1/7748
SNV	Breast	ADORA1_A52V_3	HLA-A02:01	SLVVADVAV	0.9612	0.5212	0.362	48.07	0.298	1.71	1/982	1/7748
SNV	Breast	AHNAK2_V3631M_7	HLA-A02:01	SLADKDMTA	0.9776	0.5923	0.347	9.93	0.1581	9.2	1/982	2/7748
SNV	Breast	AK9_R1889K_1	HLA-C12:03	KAIDFDHKL	0.9713	0.9845	0.0351	7.63	0.0964	8.88	1/982	1/7748
SNV	Breast	AK9_T1711P_4	HLA-B27:05	KRLPLSELK	0.9995	0.9494	0.0948	7.38	0.1698	8.88	1/982	1/7748
SNV	Breast	ALG10_W81C_7	HLA-C12:03	VIKPAICIF	0.902	0.954	0.4101	278.59	0.8529	15.44	1/982	1/7748
SNV	Breast	ANK2_E892Q_6	HLA-B27:05	LRYSLQGGR	0.998	0.8998	0.3465	316.04	0.5415	1.59	1/982	1/7748
SNV	Breast	AP4E1_N469D_7	HLA-B35:03	HPDIPNDFL	0.9863	0.897	0.0979	15.98	0.0446	12.21	1/982	1/7748
SNV	Breast	AP4E1_N469D_4	HLA-B35:03	IPNDFLRLL	0.9757	0.8657	0.0483	11.27	0.0368	12.21	1/982	1/7748
SNV	Breast	ARHGAP6_K133N_7	HLA-B27:05	GRGGLKNSM	0.9982	0.9286	0.4079	17.32	0.237	2.27	1/982	1/7748
SNV	Breast	ARMC5_F842L_1	HLA-A02:01	LLLPGLEEEL	0.9785	0.6134	0.6693	74.08	0.3529	5.61	1/982	1/7748
SNV	Breast	ARSK_M340I_8	HLA-C12:03	SAHVPLLIM	0.9814	0.9682	0.0889	20.76	0.2152	12.58	1/982	1/7748
SNV	Breast	ATP8B1_E555K_6	HLA-C12:03	AASPDKGAL	0.9621	0.963	0.278	305.27	0.8842	86.81	1/982	1/7748
SNV	Breast	BCAP31_R118H_5	HLA-A02:01	FLLRHLVTL	0.9893	0.7015	0.0177	1.58	0.0307	298.73	1/982	1/7748
SNV	Breast	BCAP31_R118H_5	HLA-C12:03	FLLRHLVTL	0.9833	0.9952	0.2878	231.99	0.7893	298.73	1/982	1/7748
SNV	Breast	BICC1_D222N_3	HLA-B35:03	VPNPNSPSI	0.9793	0.8295	0.0483	5.19	0.0248	22.61	1/982	1/7748
SNV	Breast	C12orf66_T225M_9	HLA-C12:03	HSAHTKLQM	0.9329	0.977	0.1095	159.41	0.6555	11	1/982	1/7748
SNV	Breast	C19orf44_T311M_9	HLA-C12:03	VSSDTASHM	0.975	0.974	0.0711	169.99	0.6759	6.26	1/982	1/7748
SNV	Breast	C19orf44_T311M_4	HLA-C12:03	ASHMPSVSI	0.997	0.9805	0.2647	94.56	0.5072	6.26	1/982	1/7748
SNV	Breast	CA9_R376Q_8	HLA-B27:05	SRLQLNFQA	0.9995	0.9112	0.3583	14.28	0.2225	91	1/982	1/7748
SNV	Breast	CACNA1D_F888S_2	HLA-C12:03	ISTNLILVF	0.9451	0.9884	0.433	117.46	0.5652	4.4	1/982	1/7748
SNV	Breast	CASS4_S262G_8	HLA-B27:05	VRNTPLTGF	0.9993	0.55	0.1549	1.44	0.0303	1.96	1/982	1/7748
SNV	Breast	CCDC148_M54I_5	HLA-B27:05	IRKAILTSK	0.9973	0.9197	0.3224	358.06	0.5578	4.59	1/982	1/7748
SNV	Breast	CCDC9_S109L_9	HLA-B27:05	GRAGMGRAL	0.9972	0.8454	0.4655	4.67	0.1367	7.96	1/982	1/7748
SNV	Breast	CCNT1_A421T_4	HLA-B35:03	YAYTAQNLL	0.9661	0.841	0.4486	121.32	0.1104	56.04	1/982	1/7748
SNV	Breast	CCNT1_A421T_4	HLA-C06:02	YAYTAQNLL	0.9723	0.989	0.1216	289.11	0.1545	56.04	1/982	1/7748
SNV	Breast	CCNT1_A421T_4	HLA-C12:03	YAYTAQNL	0.9971	0.9861	0.273	43	0.342	56.04	1/982	1/7748
SNV	Breast	CCNT1_A421T_4	HLA-C12:03	YAYTAQNLL	0.9908	0.9772	0.0024	1.61	0.0067	56.04	1/982	1/7748
SNV	Breast	CDC42BPB_E705Q_2	HLA-C12:03	RQASHVLEV	0.9705	0.9665	1.2216	228.79	0.784	56.52	1/982	1/7748
SNV	Breast	CEACAM4_P202H_3	HLA-C12:03	HGHSHRSTF	0.6627	0.9898	0.4241	36.15	0.3119	1.26	1/982	1/7748
SNV	Breast	CELF2_G339R_7	HLA-C12:03	NSLTSLRTL	0.9025	0.9714	0.3493	168.56	0.6732	18.22	1/982	1/7748
SNV	Breast	CHRNA1_D183H_4	HLA-B35:03	FPFHEQNCSM	0.9918	0.9112	0.0133	39.76	0.0697	4.39	1/982	1/7748
SNV	Breast	CLEC16A_V123I_6	HLA-C12:03	LSNNYINSI	0.977	0.9734	0.3784	68.21	0.43	11.86	1/982	1/7748
SNV	Breast	CLIC6_R679K_10	HLA-B27:05	WRYLNNAYAK	0.9998	0.9087	0.8524	374.74	0.5637	3.95	1/982	1/7748
SNV	Breast	CLPTM1L_F251L_5	HLA-B27:05	GRLRLWIHM	0.9999	0.9156	0.2616	2.05	0.065	67.13	1/982	1/7748
SNV	Breast	CMYA5_I1786F_5	HLA-A02:01	VMGDFLDKL	0.9829	0.6611	0.0989	27.61	0.2447	8.16	1/982	1/7748
SNV	Breast	CMYA5_I1786F_1	HLA-A02:01	FLDKLSEET	0.9837	0.822	0.7275	419.68	0.6368	8.16	1/982	1/7748
SNV	Breast	CNOT1_L1855V_9	HLA-A02:01	GLREKAEYV	0.9337	0.5065	0.8448	94.13	0.3837	78.47	1/982	1/7748
SNV	Breast	CNOT1_L1855V_1	HLA-C12:03	VLREWVNLY	0.7775	0.9899	0.9444	446.2	1.0281	78.47	1/982	1/7748
SNV	Breast	COBL_E91K_8	HLA-A02:01	AMMDLLVKL	0.9985	0.6591	0.0211	1.15	0.0102	21.82	1/982	1/7748
SNV	Breast	COBL_E91K_9	HLA-A02:01	HAMMDLLVKL	0.9214	0.5609	1.6803	104.61	0.3973	21.82	1/982	1/7748
SNV	Breast	COBL_E91K_8	HLA-A02:01	AMMDLLVKLC	0.9622	0.5631	1.48	438.03	0.6463	21.82	1/982	1/7748
SNV	Breast	COBL_E91K_8	HLA-C12:03	AMMDLLVKL	0.9956	0.9723	0.2361	81.88	0.4727	21.82	1/982	1/7748
SNV	Breast	COL4A4_P1521S_8	HLA-B35:03	LPVFSTLSF	0.9912	0.8253	0.0039	40.75	0.0703	1.55	1/982	1/7748
SNV	Breast	CRNKL1_E386Q_4	HLA-B27:05	ARFQEKHAY	0.9993	0.8034	0.0035	1.39	0.0284	122.5	1/982	1/7748
SNV	Breast	CRNKL1_E386Q_4	HLA-B27:05	ARFQEKHAYF	1	0.8007	0.0047	2.27	0.0729	122.5	1/982	1/7748
SNV	Breast	CRNKL1_E386Q_4	HLA-C06:02	ARFQEKHAYF	0.9759	0.9942	0.1489	357.18	0.1742	122.5	1/982	1/7748
SNV	Breast	CTSS_D236H_7	HLA-B35:03	LPYGREHVL	0.9878	0.9405	0.0205	1.97	0.0069	242.84	1/982	1/7748
SNV	Breast	CTTNBP2NL_E632Q_8	HLA-C12:03	VANGKDVQL	0.9945	0.9344	0.2039	34.59	0.3042	25.07	1/982	1/7748
SNV	Breast	CWF19L2_R720T_5	HLA-C12:03	LQHHTAATL	0.9962	0.9859	0.5118	382.16	0.9673	28.06	1/982	1/7748
SNV	Breast	CYP4X1_I222V_9	HLA-C12:03	KAIFELSKV	0.9137	0.9845	0.2566	269.7	0.8418	69.81	1/982	1/7748
SNV	Breast	CYP4X1_I222V_8	HLA-C12:03	AIFELSKVI	0.9741	0.9648	0.934	108.12	0.543	69.81	1/982	1/7748
SNV	Breast	CYP4X1_I222V_1	HLA-C12:03	VIFHRLYSL	0.976	0.9764	0.6583	68.98	0.4326	69.81	1/982	1/7748
SNV	Breast	DAAM1_Q258E_4	HLA-B27:05	TRFETLINDL	0.9997	0.9257	0.478	12.45	0.2123	64.26	1/982	1/7748
SNV	Breast	DCHS1_A309T_5	HLA-C12:03	FSIDTHTGL	0.9992	0.9134	0.0224	2.71	0.0241	6.44	1/982	1/7748
SNV	Breast	DCN_G123A_3	HLA-B35:03	SPAAFTPLV	0.9578	0.6164	0.0544	252.31	0.1434	238.63	1/982	1/7748
SNV	Breast	DCN_G123A_7	HLA-C12:03	ISKVSPAAF	0.8907	0.9039	0.143	34.77	0.3051	238.63	1/982	1/7748
SNV	Breast	DCN_G123A_4	HLA-C12:03	VSPAAFTPL	0.9905	0.9099	0.2566	374.98	0.9602	238.63	1/982	1/7748
SNV	Breast	DCN_G123A_1	HLA-C12:03	AAFTPLVKL	0.9876	0.9878	0.0248	5.63	0.0675	238.63	1/982	1/7748
SNV	Breast	DCST2_I413M_9	HLA-A02:01	YILETFNLM	0.9814	0.5394	0.3495	195.92	0.5036	1.78	1/982	1/7748
SNV	Breast	DCST2_I413M_1	HLA-B27:05	MRHLLLVLF	0.9998	0.8495	0.0948	4.32	0.131	1.78	1/982	1/7748
SNV	Breast	DCST2_I413M_9	HLA-C12:03	YILETFNLM	0.9495	0.9883	0.2647	20.09	0.2103	1.78	1/982	1/7748
SNV	Breast	DDX60_R769Q_7	HLA-B35:03	IPDTWQQEL	0.9887	0.9493	0.0401	4.41	0.0223	31.04	1/982	1/7748
SNV	Breast	DENND4B_R316C_3	HLA-B27:05	SRCAIAVLSR	0.9998	0.6924	0.4199	143.41	0.4476	17.97	1/982	1/7748
SNV	Breast	DENND4B_R316C_4	HLA-C12:03	RSRCAIAVL	0.9516	0.9765	0.7321	232.09	0.7894	17.97	1/982	1/7748
SNV	Breast	DHX29_D612H_5	HLA-A02:01	FLLEHLLL	0.9987	0.7236	1.891	58.4	0.3224	105.91	1/982	1/7748
SNV	Breast	DHX29_D612H_1	HLA-A02:01	HLLLNEWEA	0.9459	0.5255	1.3724	288.17	0.5661	105.91	1/982	1/7748
SNV	Breast	DHX57_E619K_1	HLA-B27:05	KRVGLTVGY	0.9996	0.5931	0.0246	1.06	0.0043	22.1	1/982	1/7748
SNV	Breast	DHX57_E619K_3	HLA-C12:03	RAKRVGLTV	0.8073	0.9738	0.3889	44.04	0.3462	22.1	1/982	1/7748
SNV	Breast	DHX57_R640K_8	HLA-C12:03	SVKSSATKL	0.9791	0.9781	0.523	126.65	0.5853	22.1	1/982	1/7748
SNV	Breast	DMXL1_S656L_4	HLA-C12:03	LTTLHHNAL	0.8871	0.992	0.3644	409.87	0.9937	30.96	1/982	1/7748
SNV	Breast	DNAJB14_S42L_7	HLA-A02:01	KLYPLPLARA	0.9859	0.7915	0.6216	115.05	0.4127	16.77	1/982	1/7748
SNV	Breast	DNAJB14_S42L_5	HLA-B35:03	YPLPLARAL	0.995	0.9039	0.009	1.38	0.0033	16.77	1/982	1/7748
SNV	Breast	DNAJB14_S42L_5	HLA-B35:03	YPLPLARALL	0.9842	0.89	0.1036	63.76	0.0853	16.77	1/982	1/7748
SNV	Breast	DTX4_L548F_9	HLA-B27:05	GRKVLKLLF	0.9989	0.8967	0.368	3.48	0.111	12	1/982	1/7748
SNV	Breast	EIF5B_R1105G_6	HLA-C12:03	YIFNSGDPI	0.9812	0.9138	1.295	48.75	0.3639	123.65	1/982	1/7748
SNV	Breast	F2RL2_I187M_1	HLA-C12:03	MSINRYLAI	0.9986	0.951	0.1064	9.21	0.1147	13.36	1/982	1/7748
SNV	Breast	FAM111A_S233P_5	HLA-B27:05	GRFLPFLEN	0.9982	0.909	0.6148	145.92	0.4495	53.27	1/982	1/7748
SNV	Breast	FAM129A_A24V_9	HLA-C12:03	YIRGKTEAV	0.9896	0.9741	0.7788	47.82	0.3605	50.77	1/982	1/7748
SNV	Breast	FAM129A_A24V_2	HLA-C12:03	AVIKNFSPY	0.7117	0.9682	0.5175	149.37	0.6349	50.77	1/982	1/7748
SNV	Breast	FAM129A_A24V_1	HLA-C12:03	VIKNFSPYY	0.8153	0.969	1.7745	209.21	0.75	50.77	1/982	1/7748
SNV	Breast	FAM160A1_H70Y_9	HLA-C12:03	SAVQNYVEY	0.5373	0.9478	0.0836	21.24	0.2187	6.5	1/982	1/7748
SNV	Breast	FAM160A1_H70Y_8	HLA-C12:03	AVQNYVEYM	0.884	0.9718	0.9886	190.39	0.7142	6.5	1/982	1/7748
SNV	Breast	FAM169A_R113T_5	HLA-A02:01	TLGETVVLYV	0.9969	0.7772	0.5138	68.05	0.342	3.03	1/982	1/7748
SNV	Breast	FAM169A_R113T_6	HLA-C12:03	STLGETVVL	0.9462	0.9909	0.252	37.43	0.3179	3.03	1/982	1/7748
SNV	Breast	FAM214B_R479H_1	HLA-A02:01	HLLCYLLHL	0.9826	0.5019	0.0325	492.38	0.6721	27.11	1/982	2/7748
SNV	Breast	FAM214B_R479H_7	HLA-B35:03	NANPTHHLL	0.9944	0.8875	0.4769	102.35	0.1038	27.11	1/982	1/7748
SNV	Breast	FAM214B_R479H_7	HLA-C12:03	NANPTHHLL	0.9916	0.9789	0.1674	18.46	0.1982	27.11	1/982	1/7748
SNV	Breast	FAN1_E993K_1	HLA-A02:01	KLQKLGAEV	0.989	0.5699	0.496	86.34	0.3726	10.68	1/982	1/7748
SNV	Breast	FAN1_E993K_1	HLA-A02:01	KLQKLGAEVEV	0.986	0.6177	0.9966	368.02	0.6078	10.68	1/982	1/7748
SNV	Breast	FGF18_L185F_10	HLA-B27:05	KRYPKGQPEF	1	0.6703	0.0388	1.43	0.0298	1.48	1/982	1/7748
SNV	Breast	FGF18_L185F_10	HLA-C06:02	KRYPKGQPEF	0.9635	0.9905	0.225	94.95	0.0951	1.48	1/982	1/7748
SNV	Breast	FMO2_Q136R_1	HLA-C12:03	RSAVFDAVM	0.8099	0.9811	0.6656	263.39	0.8337	2.23	1/982	1/7748
SNV	Breast	FSTL4_D424E_5	HLA-C12:03	GVDEEISSL	0.7847	0.9727	1.116	273.38	0.8465	2.6	1/982	1/7748
SNV	Breast	GIGYF2_E319K_5	HLA-B35:03	EPIPKEQEM	0.9788	0.7417	0.0633	28.26	0.0619	35.41	1/982	1/7748
SNV	Breast	GINS1_N25S_5	HLA-B35:03	LPAFSEDGL	0.9176	0.7136	0.1515	52.23	0.0786	43.11	1/982	1/7748
SNV	Breast	GTF3C5_F173L_6	HLA-B35:03	IPPPILSRL	0.9175	0.8308	0.0798	37.51	0.0683	42.76	1/982	1/7748
SNV	Breast	GTF3C5_F173L_7	HLA-C12:03	YIPPPILSRL	0.9986	0.9661	1.3946	276.15	0.8499	42.76	1/982	2/7748
SNV	Breast	HEPH_F488S_8	HLA-C12:03	SMQPHGVSY	0.7509	0.9774	0.1365	20.6	0.2141	14.79	1/982	1/7748
SNV	Breast	HEPH_F488S_9	HLA-C12:03	FSMQPHGVSY	0.9875	0.9868	0.0979	17.61	0.193	14.79	1/982	1/7748
SNV	Breast	HERC2_R4241W_4	HLA-B27:05	RRPWQVQGL	0.9985	0.6652	0.3224	29.3	0.2807	5.14	1/982	1/7748
SNV	Breast	HEY2_A134V_1	HLA-B27:05	VRYLSSVEGL	0.9999	0.6121	0.2193	32.04	0.2885	47.31	1/982	1/7748
SNV	Breast	HIF1A_H42Y_1	HLA-A02:01	YQLPLPHNV	0.9928	0.7911	0.172	4.03	0.085	379.05	1/982	1/7748
SNV	Breast	HIF1A_H42Y_1	HLA-C12:03	YQLPLPHNV	0.8098	0.9961	1.0418	83.01	0.4759	379.05	1/982	1/7748
SNV	Breast	HIPK3_D201N_7	HLA-C12:03	NTYEVLNFL	0.7863	0.9885	0.181	17.62	0.1931	70.88	1/982	1/7748
SNV	Breast	HOOK2_E296K_5	HLA-A02:01	ALKDKMDEL	0.853	0.8108	0.8054	117.96	0.417	11.59	1/982	1/7748
SNV	Breast	HS6ST1_S78L_9	HLA-B35:03	FPVRELERL	0.9867	0.8718	0.038	10.4	0.0352	15.75	1/982	1/7748
SNV	Breast	HS6ST1_S78L_7	HLA-B27:05	VRELERLLRF	0.9998	0.5196	0.9195	290.26	0.5304	15.75	1/982	1/7748
SNV	Breast	HSDL2_R417T_8	HLA-A02:01	LMNQMNATL	0.9543	0.5277	0.5034	211.13	0.5157	133.57	3/982	3/7748
SNV	Breast	HSDL2_R417T_9	HLA-A02:01	KLMNQMNATL	0.9916	0.6026	0.2576	479.93	0.6664	133.57	2/982	2/7748
SNV	Breast	HSDL2_R417T_8	HLA-A02:01	LMNQMNATL	0.9543	0.5277	0.5034	211.13	0.5157	133.57	3/982	3/7748
SNV	Breast	HSDL2_R417T_9	HLA-A02:01	KLMNQMNATL	0.9916	0.6026	0.2576	479.93	0.6664	133.57	2/982	2/7748
SNV	Breast	HSDL2_R417T_8	HLA-A02:01	LMNQMNATL	0.9543	0.5277	0.5034	211.13	0.5157	133.57	3/982	3/7748
SNV	Breast	HSDL2_R417T_8	HLA-C12:03	LMNQMNATL	0.9949	0.9731	0.6339	262.04	0.832	133.57	3/982	3/7748
SNV	Breast	HSDL2_R417T_8	HLA-C12:03	LMNQMNATL	0.9949	0.9731	0.6339	262.04	0.832	133.57	3/982	3/7748
SNV	Breast	HSDL2_R417T_8	HLA-C12:03	LMNQMNATL	0.9949	0.9731	0.6339	262.04	0.832	133.57	3/982	3/7748
SNV	Breast	INF2_V191M_1	HLA-B35:03	MPYVVTLL	0.9977	0.9285	0.1688	342.75	0.1584	26.43	1/982	1/7748
SNV	Breast	IQCH_S830N_7	HLA-C12:03	VTFIDPNTL	0.9439	0.9824	0.1451	7.97	0.0998	2.58	1/982	1/7748
SNV	Breast	ITPRIPL1_E534K_3	HLA-C12:03	AVKEFQNLL	0.9732	0.9823	0.5679	63.38	0.4128	1.68	1/982	1/7748
SNV	Breast	KBTBD2_E612Q_1	HLA-A02:01	QLDGEMVAL	0.9726	0.7623	0.5716	16.02	0.1985	76.6	1/982	1/7748
SNV	Breast	KBTBD2_E612Q_2	HLA-A02:01	FQLDGEMVAL	0.9893	0.7328	0.434	12.78	0.1786	76.6	1/982	1/7748
SNV	Breast	KDR_A775T_8	HLA-C12:03	LVGTAVITM	0.9206	0.979	0.5118	184.31	0.7018	28.88	1/982	1/7748
SNV	Breast	KIAA0930_R299Q_1	HLA-B35:03	QPAFFSPSL	0.9622	0.7523	0.0205	5.57	0.0257	20.27	1/982	2/7748
SNV	Breast	KIAA0930_R299Q_5	HLA-B27:05	ERNNQPAFF	0.9914	0.6038	0.6326	284.26	0.5277	20.27	1/982	1/7748
SNV	Breast	KIAA1755_E920K_1	HLA-B27:05	KRAEFPELA	0.9968	0.7985	0.5181	487.5	0.598	1.15	1/982	1/7748
SNV	Breast	KIAA1755_E920K_1	HLA-B27:05	KRAEFPELAAF	1	0.6629	0.011	5.03	0.1424	1.15	1/982	1/7748
SNV	Breast	KIF11_E430Q_3	HLA-A02:01	AVQEELNRV	0.8529	0.6614	1.1183	202.66	0.5091	71.62	1/982	1/7748
SNV	Breast	KRT6A_G537D_5	HLA-C12:03	RAIGDGLSSV	0.9981	0.979	0.6194	380.78	0.9659	26.7	1/982	1/7748
SNV	Breast	LACE1_V71I_9	HLA-C12:03	ETYLKALAI	0.7202	0.9782	1.3825	223.77	0.7756	4.29	1/982	1/7748
SNV	Breast	LAMB3_A607T_6	HLA-B27:05	LRNATTSLW	0.9944	0.8418	1.293	490.55	0.5988	47.94	1/982	1/7748
SNV	Breast	LAMB3_A607T_8	HLA-B27:05	GRLRNATTSL	0.9999	0.8534	0.1914	6.94	0.1655	47.94	1/982	1/7748
SNV	Breast	LAMB3_A607T_7	HLA-C12:03	RLRNATTSL	0.9762	0.9867	1.9475	29.73	0.275	47.94	1/982	1/7748
SNV	Breast	LGI2_W370R_2	HLA-B27:05	ERFRDTDAEF	0.9998	0.5299	0.3224	352.45	0.5557	2.51	1/982	1/7748
SNV	Breast	MAN1A1_G472D_8	HLA-A02:01	GLLEHKMDHL	0.9648	0.5936	0.6693	76.5	0.3571	43.82	1/982	1/7748
SNV	Breast	MEF2C_E272K_3	HLA-C12:03	VSKDVDLLL	0.9312	0.9714	0.3644	239.64	0.8014	9.35	1/982	1/7748
SNV	Breast	MLH3_Q513E_4	HLA-B35:03	SPFETPCHF	0.9725	0.9461	0.0126	77.18	0.0922	20.53	1/982	1/7748
SNV	Breast	MMEL1_Q642H_7	HLA-C12:03	WSNFSTHHF	0.824	0.9633	0.3041	386.08	0.9712	1.86	1/982	1/7748
SNV	Breast	MOCOS_S493L_2	HLA-A02:01	SLGDWPVPQA	0.9733	0.6245	0.7688	172.6	0.4821	3.42	1/982	1/7748
SNV	Breast	MOCOS_S493L_9	HLA-C12:03	IIDTRLHSL	0.9948	0.9847	0.575	200.42	0.7337	3.42	1/982	1/7748
SNV	Breast	MROH9_A451V_7	HLA-A02:01	ALYAQDVLRV	0.9972	0.6777	0.4243	8.42	0.1447	1.06	1/982	1/7748
SNV	Breast	MROH9_A451V_5	HLA-B35:03	YAQDVLRVL	0.9955	0.9448	0.1884	107.44	0.1057	1.06	1/982	1/7748
SNV	Breast	MROH9_A451V_5	HLA-C12:03	YAQDVLRVL	0.9995	0.987	0.0105	2.18	0.0127	1.06	1/982	1/7748
SNV	Breast	MTOR_A1517V_5	HLA-B27:05	ARMAVAAAW	0.9978	0.7042	0.252	1.78	0.0509	20.48	1/982	1/7748
SNV	Breast	MTOR_A1517V_5	HLA-B27:05	ARMAVAAAWGL	1	0.7544	0.0051	100.47	0.408	20.48	1/982	1/7748
SNV	Breast	MTOR_A1517V_3	HLA-C12:03	MAVAAAWGL	0.8616	0.9922	0.3089	188.42	0.7102	20.48	1/982	1/7748
SNV	Breast	MYH11_R1668K_5	HLA-B27:05	ARASKDEIF	0.9899	0.9376	0.4655	159.36	0.4593	1.57	1/982	1/7748
SNV	Breast	MYO10_E7K_7	HLA-C12:03	FTKGTRVWL	0.8934	0.9794	0.3936	190.92	0.7152	23.45	1/982	1/7748
SNV	Breast	NBPF19_E355K_4	HLA-A02:01	LLDKKGPEV	0.9939	0.7674	0.4121	3.32	0.0722	3.39	1/982	1/7748
SNV	Breast	NCAPD3_E1081Q_3	HLA-C06:02	ERQKRLFSL	0.5928	0.991	0.225	288.82	0.1544	25.31	1/982	1/7748
SNV	Breast	NCOA3_Q1312K_4	HLA-B35:03	FPYKPNYGM	0.9928	0.8809	0.0054	1.64	0.0051	57.73	1/982	1/7748
SNV	Breast	NECAP1_P23S_4	HLA-B27:05	YRISPRASNR	0.9998	0.8329	0.3341	486.4	0.5977	80.3	1/982	1/7748
SNV	Breast	NLRP1_D1067V_9	HLA-B35:03	VPSPASQGV	0.879	0.7118	0.0633	221.92	0.1367	2.5	1/982	1/7748
SNV	Breast	NLRP1_D1067V_9	HLA-B35:03	VPSPASQGVL	0.9151	0.7945	0.0715	355.71	0.1601	2.5	1/982	1/7748
SNV	Breast	NOP2_E299K_8	HLA-B35:03	FPLSELVKF	0.9979	0.8431	0.0158	8.95	0.0323	27.08	1/982	1/7748
SNV	Breast	NPR1_D916H_7	HLA-C12:03	AVIDNFHVY	0.7449	0.9748	0.0761	3.92	0.04	1.28	1/982	1/7748
SNV	Breast	NPRL2_D214H_6	HLA-C12:03	ISAEAHVEL	0.9994	0.9901	0.0775	8.43	0.1056	14.08	1/982	1/7748
SNV	Breast	NUP205_I475M_2	HLA-A02:01	TMMGSYLGV	0.9901	0.8295	0.0169	7.15	0.131	86.7	1/982	1/7748
SNV	Breast	NUP205_I475M_8	HLA-B35:03	EPLQTPTMM	0.968	0.7667	0.0849	18.63	0.0484	86.7	1/982	1/7748
SNV	Breast	NUP205_I475M_4	HLA-B35:03	TPTMMGSYL	0.9298	0.8903	0.2158	67.47	0.0872	86.7	1/982	1/7748
SNV	Breast	NUP43_A291V_7	HLA-A02:01	SLWHWDVST	0.94	0.6234	0.2085	207.1	0.5126	71.7	1/982	1/7748
SNV	Breast	PACS1_K846N_3	HLA-C12:03	SSNNTLKSV	0.8968	0.9914	0.4729	476.41	1.0551	51.55	1/982	1/7748
SNV	Breast	PAPPA_E563K_8	HLA-C12:03	HTHTMIHKI	0.5037	0.9535	0.1564	379.07	0.9642	2.83	1/982	1/7748
SNV	Breast	PAPPA_E563K_4	HLA-C12:03	MIHKIGHSL	0.9986	0.9867	0.0425	5.33	0.0641	2.83	1/982	1/7748
SNV	Breast	PARP15_P657L_9	HLA-C12:03	SVTNNTRSL	0.9472	0.9937	0.5044	23.09	0.2312	3.84	1/982	1/7748
SNV	Breast	PARP4_L785F_5	HLA-C12:03	QSFSFTMSI	0.9432	0.9689	0.0726	9.33	0.116	44.7	1/982	1/7748
SNV	Breast	PARP4_L785F_3	HLA-C12:03	FSFTMSIEM	0.9926	0.9855	0.0165	7.57	0.0957	44.7	1/982	1/7748
SNV	Breast	PER2_E1224K_4	HLA-B35:03	IPYKEDIPSL	0.9816	0.9184	0.0786	57.59	0.0819	27.17	1/982	1/7748
SNV	Breast	PLB1_P334S_1	HLA-C12:03	SSQESPYLF	0.5553	0.9723	0.3493	430.08	1.0129	1.27	1/982	1/7748
SNV	Breast	PLVAP_A79V_11	HLA-A02:01	GLYSQLLGLTV	0.9965	0.5483	1.1549	419.86	0.6369	75.39	1/982	1/7748
SNV	Breast	PLVAP_A79V_9	HLA-C12:03	YSQLLGLTV	0.895	0.9884	0.2361	139.51	0.6133	75.39	1/982	1/7748
SNV	Breast	PRKD2_E648K_5	HLA-B27:05	GRLPKRLTK	0.9991	0.9422	0.0809	8.86	0.1845	28.71	1/982	1/7748
SNV	Breast	PRKD2_E648K_5	HLA-B27:05	GRLPKRLTKF	1	0.9353	0.0616	2.21	0.0713	28.71	1/982	1/7748
SNV	Breast	PRKD2_E648K_5	HLA-B27:05	GRLPKRLTKFL	0.9999	0.9327	0.199	172.1	0.4679	28.71	1/982	1/7748
SNV	Breast	PTCD1_S49F_3	HLA-C12:03	SSFSSQLPL	0.9813	0.8953	0.0191	35.81	0.3102	1.95	1/982	1/7748
SNV	Breast	PTEN_C124G_5	HLA-A03:01	AAIHGKAGK	0.9621	0.5161	0.3309	214.54	0.3722	45.84	1/982	1/7748
SNV	Breast	PTPN3_E584Q_1	HLA-C12:03	QSHSRELAL	0.9981	0.9635	0.1311	168.85	0.6738	25.62	1/982	1/7748
SNV	Breast	PYGB_R94H_3	HLA-C12:03	MGHTLQNTM	0.973	0.9896	0.3124	60.13	0.4005	80.28	1/982	3/7748
SNV	Breast	RASEF_A215V_5	HLA-B27:05	QRIQVAEHK	0.9995	0.5944	0.2409	65.64	0.3623	84.75	1/982	1/7748
SNV	Breast	RET_L846I_7	HLA-B35:03	HPDERAITM	0.9952	0.9347	0.0302	1.28	0.0026	13.29	1/982	1/7748
SNV	Breast	RET_L846I_7	HLA-C12:03	HPDERAITM	0.7086	0.9864	1.0865	341.97	0.9254	13.29	1/982	1/7748
SNV	Breast	RET_L846I_3	HLA-C12:03	RAITMGDLI	0.5583	0.9732	1.3145	445.63	1.0276	13.29	1/982	1/7748
SNV	Breast	RET_L846I_1	HLA-C12:03	ITMGDLISF	0.9809	0.972	0.1836	11.32	0.1371	13.29	1/982	1/7748
SNV	Breast	RFC3_V115A_3	HLA-C12:03	KTAAQSQQL	0.8435	0.9735	0.3841	150.08	0.6364	44.8	1/982	1/7748
SNV	Breast	RPL13A_T132I_6	HLA-B27:05	VRLKPIRKF	0.9996	0.9009	0.1191	2.53	0.0799	843.78	1/982	1/7748
SNV	Breast	RPL13A_T132I_6	HLA-B27:05	VRLKPIRKFAY	0.9999	0.9096	0.3465	39.48	0.3082	843.78	1/982	1/7748
SNV	Breast	RUNDC1_D207N_7	HLA-C12:03	YQEGSYNSL	0.93	0.9818	1.7994	482.25	1.0601	42.52	1/982	1/7748
SNV	Breast	RUNDC1_D207N_1	HLA-C12:03	NSLPQSVVL	0.9808	0.9857	0.2878	64.15	0.4156	42.52	1/982	1/7748
SNV	Breast	RYR2_A118V_6	HLA-C12:03	LLYGHVILL	0.9835	0.9841	0.3446	63.79	0.4143	2.58	1/982	1/7748
SNV	Breast	SETBP1_Q1094E_9	HLA-B27:05	MRPTVPPPEF	0.9998	0.6644	0.2085	258.25	0.5152	6.1	1/982	1/7748
SNV	Breast	SFMBT1_G331A_1	HLA-A02:01	AIFPVQWSL	0.9527	0.8189	0.1243	5.61	0.1126	12.27	1/982	1/7748
SNV	Breast	SFMBT1_G331A_1	HLA-A03:01	AIFPVQWSLK	0.9986	0.5078	0.1198	3.75	0.0372	12.27	1/982	1/7748
SNV	Breast	SFMBT1_G331A_1	HLA-C12:03	AIFPVQWSL	0.9759	0.9944	0.3089	29.87	0.276	12.27	1/982	1/7748
SNV	Breast	SFSWAP_E635K_10	HLA-A03:01	AVAPPCVVVK	0.9987	0.5474	0.2547	2.57	0.0215	15.22	1/982	1/7748
SNV	Breast	SFSWAP_E635K_3	HLA-C12:03	VVKEKKPQL	0.9591	0.9263	0.58	230.8	0.7873	15.22	1/982	1/7748
SNV	Breast	SH2B1_P727T_5	HLA-C12:03	AGVPTMVQL	0.9095	0.9825	0.5537	77.52	0.4599	8.28	1/982	1/7748
SNV	Breast	SLIT2_L371P_6	HLA-A02:01	SLFEGPFSL	0.9952	0.8586	0.0051	1.03	0.0023	4.01	1/982	1/7748
SNV	Breast	SLIT2_L371P_6	HLA-A02:01	SLFEGPFSLQ	0.9837	0.7966	1.821	4.86	0.1021	4.01	1/982	1/7748
SNV	Breast	SLIT2_L371P_6	HLA-A02:01	SLFEGPFSLQL	0.9974	0.7321	0.5114	2.01	0.0453	4.01	1/982	1/7748
SNV	Breast	SLIT2_L371P_2	HLA-B35:03	GPFSLQLLL	0.7513	0.8624	0.1669	475.24	0.1737	4.01	1/982	1/7748
SNV	Breast	SLIT2_L371P_6	HLA-C06:02	SLFEGPFSL	0.9887	0.9978	0.1958	389.85	0.1827	4.01	1/982	1/7748
SNV	Breast	SLIT2_L371P_6	HLA-C12:03	SLFEGPFSL	0.9902	0.9943	0.12	3.97	0.041	4.01	1/982	1/7748
SNV	Breast	SPAG17_E580K_8	HLA-B27:05	KRLATIHKL	0.9999	0.9165	0.0616	1.33	0.0255	2.05	1/982	1/7748
SNV	Breast	SPAG17_E580K_8	HLA-B27:05	KRLATIHKLM	0.9999	0.8886	0.0641	17.42	0.2374	2.05	1/982	1/7748
SNV	Breast	SPAG17_E580K_5	HLA-C12:03	ATIHKLMHF	0.8778	0.9789	0.1244	94.25	0.5063	2.05	1/982	1/7748
SNV	Breast	SRC_S269L_9	HLA-B35:03	DAWEIPREL	0.9951	0.9466	0.2899	63.34	0.0851	13.71	1/982	1/7748
SNV	Breast	SRC_S269L_9	HLA-C12:03	DAWEIPREL	0.8713	0.9856	0.4773	263.24	0.8336	13.71	1/982	1/7748
SNV	Breast	STAT1_D593V_2	HLA-C12:03	KVQQPGTFL	0.6258	0.9799	0.77	79.82	0.4667	406.01	1/982	1/7748
SNV	Breast	SYBU_L28F_6	HLA-B27:05	SRIPRFILR	0.9997	0.9004	0.1191	2.66	0.0839	9.97	1/982	1/7748
SNV	Breast	SYBU_L28F_9	HLA-C12:03	ISRSRIPRF	0.6537	0.9302	0.6339	66.87	0.4253	9.97	1/982	1/7748
SNV	Breast	SYNE2_G5239E_7	HLA-A02:01	YLTLESEAV	0.9842	0.6547	0.2576	16.17	0.1994	18.37	1/982	1/7748
SNV	Breast	SYNE2_G5239E_5	HLA-A02:01	TLESEAVPLL	0.795	0.7361	1.1183	230.22	0.5297	18.37	1/982	1/7748
SNV	Breast	SYNPO_A459V_5	HLA-B27:05	GRAAVTTPTK	0.9996	0.7028	0.2085	162.72	0.4616	15.66	1/982	1/7748
SNV	Breast	SYNPO_A459V_3	HLA-C12:03	AAVTTPTKV	0.8331	0.9801	0.1064	114.88	0.5592	15.66	1/982	1/7748
SNV	Breast	TBC1D8B_G121R_2	HLA-B27:05	RRLIAEEGK	0.9959	0.8699	0.1389	29.98	0.2827	12.75	1/982	1/7748
SNV	Breast	TBC1D8B_G121R_8	HLA-C12:03	FVQGKIRRL	0.9071	0.9765	0.283	30.79	0.2819	12.75	1/982	1/7748
SNV	Breast	TBRG4_R271W_3	HLA-B27:05	SRWSVPLL	1	0.9077	1.3125	17.57	0.2381	20.11	1/982	1/7748
SNV	Breast	TBRG4_R271W_3	HLA-B27:05	SRWSVPLLR	0.9996	0.7667	0.1113	1.27	0.0197	20.11	1/982	1/7748
SNV	Breast	TBRG4_R271W_3	HLA-B27:05	SRWSVPLLRA	0.9992	0.6249	0.2929	14.75	0.2249	20.11	1/982	1/7748
SNV	Breast	TBRG4_R271W_3	HLA-B27:05	SRWSVPLLRAI	0.9999	0.7689	0.1303	100.14	0.4077	20.11	1/982	1/7748
SNV	Breast	TBRG4_R271W_7	HLA-C12:03	LAAQSRWSV	0.9218	0.9782	0.7398	179.12	0.6925	20.11	1/982	2/7748
SNV	Breast	TBRG4_R271W_1	HLA-C12:03	WSVPLLRAI	0.9825	0.9906	0.2471	144.62	0.6247	20.11	1/982	2/7748
SNV	Breast	TCERG1_D966Y_3	HLA-A02:01	LLYETSAITL	0.9944	0.611	0.5004	267.26	0.5539	45.47	1/982	1/7748
SNV	Breast	TENM3_R470L_2	HLA-A02:01	GLQARSVSL	0.8974	0.5441	0.9689	350.02	0.5976	4.45	1/982	1/7748
SNV	Breast	TEX30_H57Y_9	HLA-C12:03	SLASHLASY	0.6476	0.9803	0.3334	85.74	0.4834	25.75	1/982	1/7748
SNV	Breast	THADA_S386L_6	HLA-A02:01	SLNGNLSIV	0.9876	0.5269	0.354	44.76	0.291	26.07	1/982	1/7748
SNV	Breast	THTPA_R36Q_6	HLA-B27:05	YRVTFQDTY	0.9986	0.6289	0.0089	1.54	0.0398	2.19	1/982	1/7748
SNV	Breast	THTPA_R36Q_6	HLA-B27:05	YRVTFQDTYY	0.9999	0.6961	0.4901	7.84	0.174	2.19	1/982	1/7748
SNV	Breast	TJP1_T693I_5	HLA-B27:05	IRLHIIKQI	0.9998	0.8128	0.478	13.77	0.2198	46.76	1/982	1/7748
SNV	Breast	TMEM246_R345C_9	HLA-A02:01	MLFPAPAAC	0.7937	0.6574	0.6927	158.52	0.4675	1.07	1/982	1/7748
SNV	Breast	TMEM246_R345C_7	HLA-B35:03	FPAPAACRTL	0.9749	0.8603	0.0235	6.44	0.0274	1.07	1/982	1/7748
SNV	Breast	TOX4_P468A_8	HLA-C12:03	TILQQPPAL	0.9164	0.9959	0.7321	131.9	0.5962	86.7	1/982	2/7748
SNV	Breast	TRAK2_K839N_7	HLA-A02:01	NLVDRLNRL	0.9446	0.558	0.702	41.38	0.2834	115.77	1/982	1/7748
SNV	Breast	TRAK2_K839N_1	HLA-B27:05	NRLGIARVV	0.9996	0.6065	0.6518	192.58	0.4804	115.77	1/982	1/7748
SNV	Breast	TRAK2_K839N_1	HLA-B27:05	NRLGIARVVK	0.9998	0.7539	0.395	242.47	0.507	115.77	1/982	1/7748
SNV	Breast	TRAV20_E2Q_9	HLA-A02:01	KMLECAFIV	0.9971	0.5713	0.0085	146.91	0.4545	1.37	1/982	1/7748
SNV	Breast	TRBV20-1_E77K_8	HLA-A03:01	ATYEQGVKK	0.9981	0.6833	0.0789	1.66	0.0085	6.75	1/982	1/7748
SNV	Breast	TRIM14_M158I_2	HLA-A02:01	IINDLSNRV	0.9918	0.5111	0.9034	57.48	0.3203	59.37	1/982	1/7748
SNV	Breast	TRIM24_I1043V_6	HLA-B27:05	KRLKSVEER	0.9992	0.8613	0.1389	29.07	0.28	52.11	1/982	1/7748
SNV	Breast	TRIM24_I1043V_3	HLA-C12:03	KSVEERQLL	0.8869	0.9617	0.4442	199.45	0.7318	52.11	1/982	1/7748
SNV	Breast	TRMT11_S106F_1	HLA-C12:03	FTYKIKIHTF	0.9992	0.9726	0.7113	164.29	0.6651	25.89	1/982	1/7748
SNV	Breast	TTBK2_E254K_4	HLA-B35:03	LPPKFSIFL	0.924	0.7854	0.0849	136.78	0.115	4.88	1/982	1/7748
SNV	Breast	TTBK2_E254K_5	HLA-C12:03	HLPPKFSIF	0.88	0.9791	0.5044	197.77	0.7286	4.88	1/982	1/7748
SNV	Breast	TTLL3_Q548H_1	HLA-B27:05	HRFQAHLQE	0.9938	0.7376	0.6326	391	0.5693	2.75	1/982	1/7748
SNV	Breast	TTLL3_Q548H_1	HLA-B27:05	HRFQAHLQEM	1	0.8282	0.0297	5.87	0.1537	2.75	1/982	1/7748
SNV	Breast	TTLL3_Q548H_1	HLA-C06:02	HRFQAHLQEM	0.9651	0.996	0.0899	229.02	0.1395	2.75	1/982	1/7748
SNV	Breast	TTLL3_Q548H_3	HLA-C12:03	SSHRFQAHL	0.9871	0.9401	0.094	486.82	1.064	2.75	1/982	1/7748
SNV	Breast	TXNDC11_A388T_4	HLA-B35:03	NPLTESHPL	0.9895	0.8296	0.0421	9.25	0.0329	80.32	1/982	1/7748
SNV	Breast	UBA2_L266M_4	HLA-B27:05	IRYMLTMDK	0.9987	0.8837	0.4655	29.28	0.2806	138.35	1/982	1/7748
SNV	Breast	ULK4_L760F_3	HLA-C12:03	YIFIYNREM	0.9742	0.9835	0.3746	7.61	0.0962	6.43	1/982	1/7748
SNV	Breast	ULK4_L760F_1	HLA-C12:03	FIYNREMLL	0.9977	0.9851	0.3591	7.62	0.0963	6.43	1/982	1/7748
SNV	Breast	UNC13B_H119Y_5	HLA-B35:03	NPTPYKILL	0.906	0.7485	0.0648	6.41	0.0274	45.22	1/982	1/7748
SNV	Breast	UNC13B_H119Y_7	HLA-B27:05	TRNPTPYKI	0.9996	0.6801	0.252	11.63	0.2072	45.22	1/982	1/7748
SNV	Breast	UNC13B_H119Y_7	HLA-B27:05	TRNPTPYKIL	0.9987	0.6993	0.7171	178.76	0.4721	45.22	1/982	1/7748
SNV	Breast	URB2_A1080D_1	HLA-B35:03	DPAALSELL	0.9088	0.6914	0.109	44.22	0.0731	22.6	1/982	1/7748
SNV	Breast	UTP15_T159I_9	HLA-B35:03	IPNSKEILI	0.9302	0.8526	0.1	140.86	0.1161	33	1/982	1/7748
SNV	Breast	WDFY3_E91K_7	HLA-B27:05	SRLMVTKIR	0.9992	0.7766	0.4551	125.22	0.4325	14.73	1/982	1/7748
SNV	Breast	WDFY3_E91K_7	HLA-B27:05	SRLMVTKIRR	0.9999	0.7712	0.3224	177.89	0.4715	14.73	1/982	1/7748
SNV	Breast	WDR91_V231I_6	HLA-A02:01	KLPPYISNM	0.9705	0.5454	0.4654	21.79	0.2247	8.89	1/982	1/7748
SNV	Breast	WDR91_V231I_6	HLA-C12:03	KLPPYISNM	0.956	0.983	0.7788	39.76	0.3284	8.89	1/982	1/7748
SNV	Breast	WNT4_D65N_8	HLA-B27:05	KRNLEVMNSV	0.9998	0.9459	0.6804	208.04	0.4889	1.32	1/982	1/7748
SNV	Breast	WTAP_A334V_9	HLA-C12:03	SGYVNQLSV	0.9043	0.9666	1.0691	102.13	0.5278	103.86	1/982	1/7748
SNV	Breast	WWP2_T138S_1	HLA-A02:01	SIFLDGPTV	0.9309	0.6197	0.4392	24.63	0.235	15.25	1/982	1/7748
SNV	Breast	WWP2_T138S_8	HLA-C12:03	VVSGGELSI	0.8493	0.9885	0.6513	415.82	0.9991	15.25	1/982	1/7748
SNV	Breast	WWP2_T138S_1	HLA-C12:03	SIFLDGPTV	0.9735	0.9832	1.626	67.5	0.4275	15.25	1/982	1/7748
SNV	Breast	ZKSCAN2_S459G_1	HLA-A02:01	GLVEEEEAA	0.8823	0.5711	1.0119	371.41	0.6099	6.48	1/982	1/7748
SNV	Breast	ZKSCAN2_S459G_8	HLA-C12:03	ISAKEHIGL	0.9802	0.9375	0.6452	445.88	1.0278	6.48	1/982	1/7748
SNV	Breast	ZKSCAN2_S459G_7	HLA-C12:03	SAKEHIGLV	0.9522	0.9367	0.0671	115.67	0.5611	6.48	1/982	1/7748
SNV	Breast	ZNF106_D421N_4	HLA-C12:03	ASSNSAASF	0.7306	0.9898	0.2361	157.11	0.6509	31.58	1/982	1/7748
SNV	Breast	ZNF12_Q616H_3	HLA-C12:03	FSHMSYLTI	0.9913	0.9677	0.0836	67.9	0.4289	54.95	1/982	1/7748
SNV	Breast	ZNF184_S682N_6	HLA-C12:03	KAFSRNTHL	0.9886	0.9461	0.0075	2.42	0.0179	56.41	1/982	1/7748
SNV	Breast	ZNF212_A60V_1	HLA-B27:05	VRLQSLEGR	0.9991	0.5076	0.3812	75.91	0.3778	15.69	1/982	1/7748
SNV	Breast	ZNF212_A60V_4	HLA-C12:03	SQAVRLQSL	0.9978	0.9793	1.3041	242.84	0.806	15.69	1/982	1/7748
SNV	Breast	ZNF275_R121T_8	HLA-A02:01	VLLVQHQTV	0.9789	0.5244	0.5286	190.79	0.4992	22.59	1/982	1/7748
SNV	Breast	ZNF592_K828R_2	HLA-B27:05	HRCAFCPMAF	0.9998	0.8448	0.4551	71.17	0.371	21.23	1/982	1/7748
SNV	Breast	ZNF648_G136S_4	HLA-A02:01	KLLSQMQPL	0.9891	0.7664	0.1535	65.76	0.3376	1.4	1/982	1/7748
SNV	Breast	ZNF648_G136S_7	HLA-C12:03	LAHKLLSQM	0.9906	0.9895	0.0041	29.88	0.276	1.4	1/982	1/7748
SNV	Breast	ZNF765_T425S_8	HLA-C12:03	KTFNQQLSL	0.9274	0.9873	0.1095	4.43	0.05	12.83	1/982	1/7748
SNV	Breast	ZNF829_E427K_9	HLA-B27:05	SRSDLIRHK	0.9984	0.819	0.2085	63.95	0.3596	10.02	1/982	1/7748
SNV	Breast	ZNFX1_H206P_4	HLA-C12:03	SVLPVLGIL	0.9362	0.9851	0.6814	79.33	0.4653	44.13	1/982	1/7748
SNV	Breast	ZSCAN5A_Q110H_7	HLA-A02:01	VMMNGVHSC	0.9068	0.7353	0.5933	187.41	0.4962	3.63	1/982	1/7748
SNV	Breast	ZZEF1_R2897S_7	HLA-A02:01	ILLPLHSAL	0.9716	0.6355	0.3277	19.64	0.2158	9.74	1/982	1/7748
SNV	Breast	ZZEF1_R2897S_7	HLA-C12:03	ILLPLHSAL	0.9981	0.9885	0.5936	119.25	0.5692	9.74	1/982	1/7748
SNV	Breast	ARHGEF39_G141V_10	HLA-A02:01	RLQEGRPEFV	0.991	0.6974	0.6794	270.56	0.5559	25.47	1/982	1/7748
SNV	Breast	ATM_E642K_1	HLA-A02:01	KLSFSEVEEL	0.9344	0.7464	1.0664	47.27	0.2963	4.31	1/982	1/7748
SNV	Breast	BTN3A3_E468D_5	HLA-C17:01	FLDYDTGEI	0.8221	0.8798	0.3683	15.26	0.0533	26.36	1/982	1/7748
SNV	Breast	CATSPERB_D783N_1	HLA-C17:01	NTDSYVITI	0.5889	0.5392	0.1081	28.55	0.0853	22.2	1/982	1/7748
SNV	Breast	CSF1R_E135Q_8	HLA-A02:01	LLTDPVLQA	0.9934	0.605	0.354	24.89	0.2359	44.45	1/982	1/7748
SNV	Breast	CSF1R_E135Q_3	HLA-A02:01	VLQAGVSLV	0.9881	0.6454	0.1204	20.32	0.2187	44.45	1/982	1/7748
SNV	Breast	ECM2_S213F_4	HLA-A02:01	ALQFEEDEEV	0.8671	0.5572	1.1663	7.34	0.1332	24.06	1/982	1/7748
SNV	Breast	GALNT8_A279S_5	HLA-A02:01	AILDSHIEV	0.9984	0.7939	0.3324	2.72	0.059	3.5	1/982	1/7748
SNV	Breast	GALNT8_A279S_4	HLA-A02:01	ILDSHIEVNV	0.9977	0.7211	0.6281	11.12	0.1671	3.5	1/982	1/7748
SNV	Breast	GALNT8_A279S_5	HLA-C17:01	AILDSHIEV	0.7742	0.9871	0.3994	38.43	0.1096	3.5	1/982	1/7748
SNV	Breast	INHBB_E257K_1	HLA-A02:01	KLAVVPVFV	0.9965	0.5951	0.0449	2.16	0.0492	32.22	1/982	1/7748
SNV	Breast	INHBB_E257K_1	HLA-C17:01	KLAVVPVFV	0.5058	0.988	1.9231	256.31	0.3462	32.22	1/982	1/7748
SNV	Breast	LILRB5_R41W_3	HLA-C17:01	IAWGKPVTL	0.9186	0.9653	0.0059	17	0.0577	3.32	1/982	1/7748
SNV	Breast	LILRB5_R41W_3	HLA-C07:02	IAWGKPVTL	0.9947	0.9619	0.1449	79.89	0.1728	3.32	1/982	1/7748
SNV	Breast	MSH2_Q510H_7	HLA-A02:01	GLDPGKHIKL	0.942	0.6183	0.8661	98.06	0.389	35.16	1/982	1/7748
SNV	Breast	NCKAP1L_Q431E_4	HLA-C07:02	YHLEYLARF	0.767	0.9157	0.2519	30.96	0.0995	12.21	1/982	1/7748
SNV	Breast	PARD6B_E214K_5	HLA-A02:01	AVNDKVLEV	0.9944	0.7844	0.568	4.5	0.0962	5.37	1/982	1/7748
SNV	Breast	PARD6B_E214K_1	HLA-A02:01	KVLEVNGIEV	0.9928	0.7366	0.8325	161	0.4702	5.37	1/982	1/7748
SNV	Breast	PARD6B_E214K_5	HLA-C17:01	AVNDKVLEV	0.8914	0.9853	0.0813	10.53	0.0386	5.37	1/982	1/7748
SNV	Breast	PBRM1_G1554R_6	HLA-B07:02	TPAPGRSPY	0.974	0.5039	0.2072	24.06	0.1652	32.56	1/982	1/7748
SNV	Breast	PBRM1_G1554R_2	HLA-C07:02	GRSPYGQQV	0.7851	0.9301	0.3336	322.01	0.3325	32.56	1/982	1/7748
SNV	Breast	PIKFYVE_Q1047E_7	HLA-C17:01	YSLAFKEEL	0.6861	0.9661	0.1659	469.58	0.4656	13.6	1/982	1/7748
SNV	Breast	PYGL_K724N_4	HLA-A02:01	ALDNKGYEA	0.9889	0.5657	0.9635	89.11	0.3767	35.82	1/982	1/7748
SNV	Breast	RAPGEF6_R141T_3	HLA-C07:02	RRTFRKINY	0.8464	0.8595	0.7356	482.16	0.3921	4.18	1/982	1/7748
SNV	Breast	SLC5A11_P571L_1	HLA-C17:01	LAAPLSLTL	0.9613	0.9804	0.0119	21.28	0.0694	1.1	1/982	1/7748
SNV	Breast	SMC1B_H524N_7	HLA-A02:01	RLFDLCNPI	0.9937	0.737	0.0703	232.96	0.5317	3.16	1/982	1/7748
SNV	Breast	STAU1_Q128E_4	HLA-A02:01	LLYEVELSV	0.999	0.6834	0.026	1.56	0.0301	201.96	1/982	1/7748
SNV	Breast	STAU1_Q128E_4	HLA-C17:01	LLYEVELSV	0.57	0.9507	0.5059	108.2	0.2215	201.96	1/982	1/7748
SNV	Breast	TBC1D10B_I642M_9	HLA-C07:02	RRLHGSRAM	0.8369	0.8862	0.0791	46.56	0.1264	41.11	1/982	1/7748
SNV	Breast	TXLNB_F370L_10	HLA-A02:01	TLYSGRFEEL	0.982	0.6264	0.8186	220.91	0.523	6.96	1/982	1/7748
SNV	Breast	TXLNB_F370L_9	HLA-C07:02	LYSGRFEEL	0.7342	0.9751	0.106	193.54	0.266	6.96	1/982	1/7748
SNV	Breast	TXLNB_F370L_5	HLA-C07:02	RFEELQSTL	0.923	0.9788	0.2402	338.39	0.3398	6.96	1/982	1/7748
SNV	Breast	UBAP2L_S1000F_2	HLA-C07:02	HFGTPAASF	0.636	0.9798	0.206	453.75	0.3831	96.63	1/982	1/7748
SNV	Breast	UNC45A_S148L_4	HLA-A02:01	YMSLTDAKV	0.9878	0.5031	0.0653	48.52	0.2989	30.94	1/982	1/7748
SNV	Breast	UNC45A_S148L_1	HLA-C17:01	LTDAKVEQM	0.802	0.9897	0.0511	194.74	0.2996	30.94	1/982	1/7748
SNV	Breast	ZNF532_V522L_7	HLA-A02:01	KLVPKTLHL	0.9861	0.6962	0.0804	3.21	0.0705	23.54	1/982	1/7748
SNV	Breast	ZNF532_V522L_7	HLA-C07:02	KLVPKTLHL	0.5212	0.8926	0.4018	152.64	0.2391	23.54	1/982	1/7748
SNV	Breast	ZNF846_S406F_6	HLA-C17:01	KAFNNFSML	0.7522	0.7287	0.07	226.63	0.3253	4.74	1/982	1/7748
SNV	Breast	ABCA12_E1504K_4	HLA-A02:01	ILDKPSTGV	0.9915	0.5833	0.354	3.81	0.0788	29.58	1/982	1/7748
SNV	Breast	ABCB4_E513Q_4	HLA-C03:04	NAYQFIMKL	0.9991	0.9869	0.0494	8.75	0.074	1.04	1/982	1/7748
SNV	Breast	ABCB4_E513Q_4	HLA-C02:02	NAYQFIMKL	0.6804	0.9831	0.0714	214.74	0.2777	1.04	1/982	1/7748
SNV	Breast	ABHD8_E403K_4	HLA-A02:01	VMLKCPETV	0.9784	0.7476	0.1243	267.86	0.5543	11.93	1/982	1/7748
SNV	Breast	AKAP13_D2043H_7	HLA-A02:01	KLFPCLHEL	0.9981	0.7512	0.0109	2.28	0.0516	36.8	1/982	1/7748
SNV	Breast	ANKRD6_S11L_6	HLA-C02:02	AVAALLERL	0.9512	0.9788	1.1406	488.55	0.4645	3.7	1/982	1/7748
SNV	Breast	ANO1_E604D_5	HLA-C03:04	KSFEDRLIF	0.9575	0.9823	0.9584	191.94	0.3557	12.14	1/982	1/7748
SNV	Breast	ANXA4_D284N_9	HLA-B27:02	SRAEIDMLNI	0.9994	0.6116	0.389	81.29	0.3753	28.84	1/982	1/7748
SNV	Breast	ASAP1_E569K_7	HLA-A02:01	KLNELLKAI	0.994	0.593	0.4709	13.16	0.1812	45.81	1/982	1/7748
SNV	Breast	ASAP1_E569K_1	HLA-C03:04	KAIKSRDLL	0.9728	0.9852	0.4431	402.23	0.4674	45.81	1/982	1/7748
SNV	Breast	ASPM_F2491L_1	HLA-B27:02	LRMYRTYITF	1	0.6616	0.205	93.95	0.3888	10.75	1/982	1/7748
SNV	Breast	ASPM_F2491L_9	HLA-C03:04	AAVLIQATL	0.9997	0.9933	0.1061	13.5	0.1016	10.75	1/982	1/7748
SNV	Breast	ASPM_F2491L_7	HLA-C03:04	VLIQATLRM	0.9361	0.9911	1.5034	319.33	0.43	10.75	1/982	1/7748
SNV	Breast	ATP2A3_I865M_10	HLA-C03:04	FVYDAEGPHM	0.9998	0.9898	0.0561	187.73	0.3527	94.35	1/982	1/7748
SNV	Breast	ATP2A3_I865M_10	HLA-C02:02	FVYDAEGPHM	0.9912	0.9851	0.1083	80.66	0.1403	94.35	1/982	1/7748
SNV	Breast	ATP2C1_D413H_1	HLA-C03:04	HAVIRNNTL	0.9994	0.9954	0.0836	6.43	0.0595	161	1/982	1/7748
SNV	Breast	ATRX_Q42E_4	HLA-A02:01	AMNENTDKI	0.873	0.5457	0.4984	129.75	0.4333	38.28	1/982	1/7748
SNV	Breast	B3GNT7_D202N_6	HLA-B27:02	DRLYGNILQW	0.9986	0.656	1.2517	3.17	0.1257	17.88	1/982	1/7748
SNV	Breast	BBS9_L180V_3	HLA-A03:01	FLVPGPLAY	0.6832	0.5767	0.8081	105.66	0.2862	8.02	1/982	1/7748
SNV	Breast	BBS9_L180V_9	HLA-B27:02	GRFLPGFLV	0.9999	0.7934	0.1698	1.3	0.0342	8.02	1/982	1/7748
SNV	Breast	BBS9_L180V_3	HLA-C03:04	FLVPGPLAY	0.7748	0.9949	0.2975	112.58	0.2868	8.02	1/982	1/7748
SNV	Breast	CCDC14_S710F_7	HLA-C03:04	SAPGIIFAL	0.999	0.9629	0.0294	5.32	0.0522	16.49	1/982	1/7748
SNV	Breast	CCDC14_S710F_7	HLA-C02:02	SAPGIIFAL	0.8955	0.9277	0.1144	230.96	0.2895	16.49	1/982	1/7748
SNV	Breast	CFAP53_E378Q_8	HLA-A02:01	KLAEKDKQL	0.9726	0.5443	0.8915	83.11	0.3677	1.46	1/982	1/7748
SNV	Breast	COL13A1_Q94E_8	HLA-A02:01	AILGRVNEL	0.9879	0.6354	1.0119	49.02	0.2999	1.84	1/982	2/7748
SNV	Breast	COL13A1_Q94E_7	HLA-A02:01	ILGRVNELL	0.9797	0.5877	0.7638	122.41	0.4233	1.84	1/982	2/7748
SNV	Breast	COL13A1_Q94E_5	HLA-B27:02	GRVNELLDEKW	0.9999	0.5613	0.1186	9.21	0.1963	1.84	1/982	1/7748
SNV	Breast	COL13A1_Q94E_8	HLA-C03:04	AILGRVNEL	0.997	0.9861	0.4491	213.28	0.3701	1.84	1/982	1/7748
SNV	Breast	COL13A1_Q94E_8	HLA-C02:02	AILGRVNEL	0.9024	0.9774	0.5754	453.62	0.4432	1.84	1/982	1/7748
SNV	Breast	COL6A2_Q810H_7	HLA-A02:01	VLCPDPHIV	0.993	0.6338	0.2976	107.59	0.4012	187.62	1/982	1/7748
SNV	Breast	COL6A5_I53M_2	HLA-C03:04	FMNKMINSL	0.9954	0.9883	0.1854	39.77	0.1845	7.24	1/982	1/7748
SNV	Breast	COL6A5_I53M_2	HLA-C02:02	FMNKMINSL	0.8298	0.9872	0.1898	31.88	0.0716	7.24	1/982	1/7748
SNV	Breast	COMMD4_F74L_9	HLA-C03:04	KATVAVLSL	0.9985	0.9917	0.0954	13.28	0.1	13.35	1/982	1/7748
SNV	Breast	CPED1_H230Y_1	HLA-A02:01	YLLKTVKPRV	0.9771	0.7338	0.7385	55.89	0.3167	9.88	1/982	1/7748
SNV	Breast	DCTN4_D390H_6	HLA-C02:02	FQDDPHIIAF	0.9872	0.9812	0.5303	438.08	0.4332	92.05	1/982	1/7748
SNV	Breast	DDX20_L254F_5	HLA-C03:04	LANAFTKYM	0.9988	0.9843	0.2016	74.61	0.244	27.04	1/982	1/7748
SNV	Breast	DDX20_L254F_5	HLA-C02:02	LANAFTKYM	0.7206	0.982	0.0736	222.55	0.2835	27.04	1/982	1/7748
SNV	Breast	DGKD_T299M_6	HLA-C03:04	SVIPPMAL	0.9998	0.9741	0.4783	115.1	0.2891	13.34	1/982	1/7748
SNV	Breast	DGKD_T299M_7	HLA-C03:04	VSVIPPMAL	0.9994	0.9793	0.033	4.04	0.0398	13.34	1/982	1/7748
SNV	Breast	DGKD_T299M_7	HLA-C02:02	VSVIPPMAL	0.6767	0.9015	0.1378	216.77	0.2792	13.34	1/982	1/7748
SNV	Breast	DHPS_F49L_6	HLA-A02:01	ALLEALGTT	0.9621	0.688	0.6029	306.1	0.5759	29.55	1/982	1/7748
SNV	Breast	DHPS_F49L_4	HLA-B40:01	LEALGTTGF	0.971	0.6656	0.1701	7.05	0.1989	29.55	1/982	1/7748
SNV	Breast	DNAH7_Q3256H_7	HLA-A02:01	ILAKRLHIL	0.9251	0.5795	0.4044	91.91	0.3807	1	1/982	1/7748
SNV	Breast	DNAH7_Q3256H_4	HLA-B27:02	KRLHILKDHF	1	0.6919	0.0075	9.69	0.1991	1	1/982	1/7748
SNV	Breast	DYNC2H1_R3525Q_10	HLA-B27:02	YRFSLAAFLQL	1	0.7532	0.4201	70	0.3614	5.21	1/982	1/7748
SNV	Breast	DYNC2H1_R3525Q_8	HLA-C03:04	FSLAAFLQL	0.999	0.9939	0.0104	28.35	0.1624	5.21	1/982	1/7748
SNV	Breast	EDC3_D205H_2	HLA-C03:04	FHFEGNLAL	0.9569	0.9948	0.8694	120.7	0.294	43.92	1/982	1/7748
SNV	Breast	EPG5_M2276I_9	HLA-A02:01	SLFMEVLMI	0.989	0.5471	0.3974	22.4	0.227	23.22	1/982	1/7748
SNV	Breast	FAAH_F192L_1	HLA-C03:04	LSYDCSNPL	0.9992	0.991	0.0125	207.73	0.3665	3.76	1/982	1/7748
SNV	Breast	FAAH_F192L_9	HLA-C02:02	HTNVPQSML	0.6695	0.9698	0.5134	371.18	0.3892	3.76	1/982	1/7748
SNV	Breast	FAM219B_S91L_6	HLA-A03:01	GMLGALPNR	0.9124	0.775	0.2679	240.94	0.3872	9.68	1/982	1/7748
SNV	Breast	FAM84A_R279P_4	HLA-B27:02	GRLPVLQEL	0.9999	0.5999	0.0506	1.14	0.0143	14.43	1/982	1/7748
SNV	Breast	FBXO18_I930M_4	HLA-B27:02	KRLMMTKSL	0.9999	0.5004	0.1248	14.81	0.2288	24.2	1/982	1/7748
SNV	Breast	FOCAD_H1722Y_8	HLA-A02:01	FLGRSPMYRV	0.988	0.8538	0.534	253.5	0.5453	341.28	1/982	1/7748
SNV	Breast	FOCAD_H1722Y_1	HLA-B27:02	YRVTLQEVL	0.9995	0.5434	0.1248	3.3	0.1286	341.28	1/982	1/7748
SNV	Breast	FOCAD_H1722Y_6	HLA-B27:02	GRSPMYRVTL	0.9998	0.6598	0.2194	40.41	0.3102	341.28	1/982	1/7748
SNV	Breast	FOCAD_H1722Y_1	HLA-B27:02	YRVTLQEVLTL	1	0.5109	0.2781	117.49	0.4115	341.28	1/982	1/7748
SNV	Breast	GFPT2_D43N_3	HLA-A02:01	AINGNNHEV	0.9735	0.762	0.7911	362.79	0.6047	25.13	1/982	2/7748
SNV	Breast	GTF3C1_E1744Q_4	HLA-C03:04	AALQILEAI	0.9965	0.9924	0.4014	217.2	0.3726	28.29	1/982	1/7748
SNV	Breast	HIST1H4D_R40C_4	HLA-A03:01	RLACRGGVK	0.9983	0.5046	0.1305	184.96	0.3529	1.55	1/982	1/7748
SNV	Breast	HNRNPH3_D134N_7	HLA-B27:02	GRGSMYNRM	0.9992	0.7635	0.3713	115.37	0.4095	57.31	1/982	1/7748
SNV	Breast	IDI1_E179Q_9	HLA-B40:01	AELGIPLEQV	0.979	0.8419	0.202	12.24	0.2617	125.43	1/982	1/7748
SNV	Breast	IRF6_R300T_7	HLA-A02:01	LLDVMDTGL	0.946	0.731	0.5055	41.08	0.2827	122.39	1/982	1/7748
SNV	Breast	IRF6_R300T_8	HLA-A02:01	KLLDVMDTGL	0.9927	0.7658	0.3016	5.71	0.1139	122.39	1/982	1/7748
SNV	Breast	IRF6_R300T_5	HLA-C03:04	DVMDTGLIL	0.9815	0.9882	1.3876	448.04	0.4849	122.39	1/982	1/7748
SNV	Breast	JAK2_C75F_3	HLA-C03:04	KAFGITPVY	0.8252	0.9936	0.86	263.16	0.3989	11.99	1/982	1/7748
SNV	Breast	KAT6A_E112Q_2	HLA-A03:01	AQSGGSTLK	0.9921	0.5228	0.3713	100.72	0.2818	45.8	1/982	1/7748
SNV	Breast	KAT6A_E112Q_3	HLA-C03:04	LAQSGGSTL	0.9986	0.9917	0.0231	2.83	0.0299	45.8	1/982	1/7748
SNV	Breast	KIF13A_D1184H_8	HLA-A02:01	FLDLNADHL	0.9902	0.6685	0.2829	4.27	0.092	30.57	1/982	1/7748
SNV	Breast	KIF21B_E472Q_7	HLA-C03:04	KAGDGNQAI	0.927	0.9911	0.1218	350.07	0.4449	2.52	1/982	1/7748
SNV	Breast	LIX1L_R313C_9	HLA-B27:02	ARLAGKELCF	1	0.7981	0.0354	2.79	0.1123	15.1	1/982	1/7748
SNV	Breast	LMTK2_S1474C_6	HLA-B27:02	SRFSICPANI	0.9999	0.5052	0.2405	27.62	0.2772	12.31	1/982	1/7748
SNV	Breast	LRCH3_P144S_6	HLA-A02:01	QLSTLSVHL	0.9778	0.6235	0.2375	218.63	0.5214	12.71	1/982	1/7748
SNV	Breast	LRP5_R494W_7	HLA-A02:01	NLDGQEWRV	0.9544	0.8468	0.6095	12.17	0.1743	38.09	1/982	1/7748
SNV	Breast	LRP5_R494W_1	HLA-B27:02	WRVLVNASL	0.9997	0.6754	0.2194	6.56	0.1778	38.09	1/982	1/7748
SNV	Breast	LRP5_R494W_1	HLA-B27:02	WRVLVNASLGW	0.9999	0.5034	0.3426	55.38	0.3396	38.09	1/982	1/7748
SNV	Breast	LYSMD1_A188T_4	HLA-B40:01	GEDTGLHL	0.9997	0.5293	0.7046	145.74	0.4988	22.31	1/982	1/7748
SNV	Breast	LYSMD3_D31H_1	HLA-A02:01	HILEEDAEV	0.9706	0.8414	0.912	60.53	0.327	58.58	1/982	1/7748
SNV	Breast	MAST2_E731Q_7	HLA-C02:02	FFGDTPQEL	0.5612	0.9909	1.211	368.32	0.3875	40.94	1/982	1/7748
SNV	Breast	MDN1_D4619H_7	HLA-A02:01	VLSSYSHLV	0.9974	0.5302	0.0055	4	0.0836	17.53	1/982	1/7748
SNV	Breast	MDN1_D4619H_5	HLA-C03:04	SSYSHLVLF	0.9955	0.9927	0.1599	94.96	0.2691	17.53	1/982	1/7748
SNV	Breast	ME3_L242V_5	HLA-B27:02	LRDPVYIGL	0.9979	0.5056	0.2194	3.35	0.1295	1.4	1/982	1/7748
SNV	Breast	MEIS2_G82E_4	HLA-A02:01	AIYEHPLFPL	0.9882	0.6694	0.3713	104.46	0.3971	1.03	1/982	1/7748
SNV	Breast	MFHAS1_F491L_1	HLA-A02:01	LLSPGALYV	0.9955	0.5304	0.0109	1.57	0.0304	26.08	1/982	1/7748
SNV	Breast	MFHAS1_F491L_2	HLA-A02:01	FLLSPGALYV	0.9987	0.61	0.047	2.12	0.0481	26.08	1/982	1/7748
SNV	Breast	MLXIP_S125W_5	HLA-A02:01	SIDAWLTKL	0.9047	0.6306	0.2899	325.15	0.5857	33.85	1/982	1/7748
SNV	Breast	MR1_S22F_4	HLA-C03:04	HSDFRTHSL	0.999	0.9727	0.0866	255.05	0.3946	16.53	1/982	1/7748
SNV	Breast	MRPL13_Q40E_4	HLA-B27:02	IRLEGLHKPVY	1	0.5448	0.3345	9.33	0.197	39.53	1/982	1/7748
SNV	Breast	MTCH2_M215I_10	HLA-C03:04	YALDSGVSTI	0.9997	0.9802	0.1511	38.15	0.1814	153.14	1/982	1/7748
SNV	Breast	MUC16_F5552L_4	HLA-B27:02	TRLLTSPIM	0.9996	0.5344	0.2874	73.1	0.3654	1.11	1/982	1/7748
SNV	Breast	MYO7A_V1792I_6	HLA-B27:02	KRTRSINEL	0.9998	0.8257	0.3269	464.99	0.5686	1.06	1/982	1/7748
SNV	Breast	NINL_E482Q_2	HLA-B40:01	AQEAGLREKL	0.9532	0.554	0.8942	15.26	0.2797	2.79	1/982	1/7748
SNV	Breast	NMT2_G472A_4	HLA-C02:02	FGIADGNLQY	0.9534	0.9772	0.8534	128.18	0.1941	5	1/982	1/7748
SNV	Breast	NOD1_Q877E_6	HLA-A02:01	ILWLTENEL	0.9627	0.5839	0.8011	45.68	0.293	4.34	1/982	1/7748
SNV	Breast	NPFFR2_E502K_3	HLA-C03:04	SAKKPQQEL	0.9995	0.9751	0.0866	425.23	0.4764	9.76	1/982	1/7748
SNV	Breast	NR1D2_M407I_3	HLA-C03:04	FSISFTPAV	0.9964	0.968	0.0104	11.55	0.0919	38.31	1/982	1/7748
SNV	Breast	NR1D2_M407I_3	HLA-C02:02	FSISFTPAV	0.9237	0.9147	0.0229	75.94	0.1363	38.31	1/982	1/7748
SNV	Breast	OAS2_D125H_3	HLA-A02:01	SLHGFTIQV	0.9976	0.7215	0.0077	1.42	0.0178	141.71	1/982	1/7748
SNV	Breast	OAS2_D125H_4	HLA-A02:01	KSLHGFTIQV	0.9677	0.6855	0.6436	121.35	0.4218	141.71	1/982	1/7748
SNV	Breast	OLFML2B_S373L_7	HLA-C03:04	RTAPWSLAL	0.9982	0.9824	0.0645	3.04	0.032	55.09	1/982	1/7748
SNV	Breast	OLFML2B_S373L_7	HLA-C02:02	RTAPWSLAL	0.9885	0.9645	0.0279	4.81	0.0079	55.09	1/982	1/7748
SNV	Breast	ORC4_H166Y_3	HLA-C03:04	FAYHKNQTL	0.9999	0.9941	0.0004	1.11	0.0024	18.94	1/982	1/7748
SNV	Breast	ORC4_H166Y_3	HLA-C03:04	FAYHKNQTLL	0.9996	0.9927	0.1919	84.37	0.2568	18.94	1/982	1/7748
SNV	Breast	ORC4_H166Y_3	HLA-C02:02	FAYHKNQTL	0.9773	0.9892	0.0005	7.02	0.0098	18.94	1/982	1/7748
SNV	Breast	PCDH12_L8V_2	HLA-A02:01	GLLGPGGYL	0.9627	0.7372	0.7134	91.38	0.3799	5.97	3/982	3/7748
SNV	Breast	PCDH12_L8V_2	HLA-A02:01	GLLGPGGYL	0.9627	0.7372	0.7134	91.38	0.3799	5.97	3/982	3/7748
SNV	Breast	PCDH12_L8V_2	HLA-A02:01	GLLGPGGYL	0.9627	0.7372	0.7134	91.38	0.3799	5.97	3/982	3/7748
SNV	Breast	PCDHA11_S617L_1	HLA-B27:02	LRIPFRVGL	0.9999	0.5978	0.0581	2.17	0.0927	3.22	1/982	1/7748
SNV	Breast	PCDHA11_S617L_10	HLA-B40:01	YELQPAAGGL	0.9789	0.5978	0.1645	3.19	0.1405	3.22	1/982	1/7748
SNV	Breast	PGBD4_L489F_5	HLA-B27:02	FRLAFIERM	0.9999	0.5086	0.1373	1.7	0.0697	2.44	1/982	1/7748
SNV	Breast	PLXNB1_R1712Q_4	HLA-A02:01	MLFQGIKHQV	0.9976	0.6658	0.2221	6.08	0.1185	17.79	1/982	1/7748
SNV	Breast	PMS2_E757Q_5	HLA-C03:04	FVIDQNAPV	0.9932	0.989	0.0576	15.17	0.1132	27.12	1/982	1/7748
SNV	Breast	PMS2_E757Q_5	HLA-C02:02	FVIDQNAPV	0.8206	0.976	0.1447	51.97	0.1079	27.12	1/982	1/7748
SNV	Breast	POGZ_F1075L_9	HLA-C03:04	ISYEWAVRL	0.9994	0.9897	0.2846	16.67	0.1226	58.93	1/982	1/7748
SNV	Breast	POGZ_F1075L_9	HLA-C02:02	ISYEWAVRL	0.6461	0.9395	0.2657	29.32	0.066	58.93	1/982	1/7748
SNV	Breast	PRKDC_S60Y_1	HLA-B27:02	YRDFGLLVF	0.9933	0.7954	0.1446	1.49	0.0534	112.38	1/982	1/7748
SNV	Breast	PRKDC_S60Y_1	HLA-C02:02	YRDFGLLVF	0.5713	0.9881	1.9591	290.97	0.3362	112.38	1/982	1/7748
SNV	Breast	PTPRG_Q1315E_5	HLA-B27:02	VRHFECPKW	0.9928	0.7615	0.3713	65.35	0.355	10.03	1/982	1/7748
SNV	Breast	QSER1_H95D_4	HLA-A02:01	ILSDHDPLL	0.992	0.6835	0.1038	1.57	0.0305	35.34	1/982	1/7748
SNV	Breast	QSER1_H95D_5	HLA-A02:01	GILSDHDPLL	0.8821	0.6305	0.9285	198.66	0.5058	35.34	1/982	1/7748
SNV	Breast	RGPD2_L26F_1	HLA-B27:02	FRGFYFAKLY	0.9996	0.681	1.3533	189.44	0.4648	1.24	1/982	1/7748
SNV	Breast	RHBDF2_E308Q_2	HLA-C02:02	FQSPPLSASY	0.8991	0.9859	0.1487	437.24	0.4327	17.01	1/982	1/7748
SNV	Breast	RIC1_Q1295H_5	HLA-C03:04	SIINHILVI	0.9954	0.98	0.2916	113.1	0.2873	22.63	1/982	1/7748
SNV	Breast	RIC1_Q1295H_5	HLA-C02:02	SIINHILVI	0.6273	0.95	0.4955	169.39	0.2391	22.63	1/982	1/7748
SNV	Breast	RICTOR_L809F_4	HLA-B27:02	LRFFSIPKGF	1	0.5655	0.0155	1.78	0.0734	27.46	1/982	1/7748
SNV	Breast	RICTOR_L809F_1	HLA-C03:04	FSIPKGFSY	0.9791	0.9736	0.2131	439.48	0.4817	27.46	1/982	1/7748
SNV	Breast	RICTOR_L809F_1	HLA-C03:04	FSIPKGFSYL	0.9999	0.987	0.131	372.38	0.4549	27.46	1/982	1/7748
SNV	Breast	RICTOR_L809F_1	HLA-C02:02	FSIPKGFSYL	0.9943	0.9717	0.2389	377.8	0.393	27.46	1/982	1/7748
SNV	Breast	RNASEH2A_R76P_7	HLA-A02:01	TLLESEPERL	0.9817	0.5811	0.9034	116.8	0.4153	23.1	1/982	1/7748
SNV	Breast	RUFY2_E119K_5	HLA-A02:01	KLYPKAEEI	0.9928	0.7006	0.4853	2.3	0.0519	9.41	1/982	1/7748
SNV	Breast	RUFY2_E119K_1	HLA-C03:04	KAEEIGASV	0.8539	0.9953	0.2131	84.07	0.2565	9.41	1/982	1/7748
SNV	Breast	RYR1_I2809M_5	HLA-B27:02	YRWPMKESL	0.9996	0.5727	0.0075	1.39	0.0438	1.9	1/982	1/7748
SNV	Breast	SACS_D3403N_5	HLA-C03:04	MSQDNIKIL	0.9997	0.9803	0.0794	57.06	0.2157	3.44	1/982	1/7748
SNV	Breast	SCYL3_K374N_7	HLA-C02:02	FTQEQLNKV	0.554	0.9577	0.2134	308.13	0.3487	65.63	1/982	1/7748
SNV	Breast	SDE2_S392C_5	HLA-C03:04	LAFTCVAEL	0.9996	0.9879	0.0071	279.59	0.4085	52.23	1/982	1/7748
SNV	Breast	SIN3A_H306Y_1	HLA-C03:04	YAINYVNKI	0.9992	0.9833	0.0424	3.9	0.0389	53.12	1/982	1/7748
SNV	Breast	SIN3A_H306Y_1	HLA-C02:02	YAINYVNKI	0.8374	0.9742	0.0648	18.24	0.0412	53.12	1/982	1/7748
SNV	Breast	SLC38A5_F450L_6	HLA-A02:01	VLGVLLMAV	0.9663	0.626	0.1777	471.97	0.6627	23.75	1/982	1/7748
SNV	Breast	SLC38A6_G120E_4	HLA-A02:01	GLPEKLVVA	0.9606	0.7701	0.6827	14.94	0.1924	9.34	1/982	1/7748
SNV	Breast	SLC38A6_G120E_7	HLA-C03:04	FAFGLPEKL	0.9999	0.9946	0.0018	1.84	0.0143	9.34	1/982	1/7748
SNV	Breast	SLC38A6_G120E_7	HLA-C02:02	FAFGLPEKL	0.8495	0.9949	0.0059	14.19	0.0286	9.34	1/982	1/7748
SNV	Breast	SLFN13_S132F_8	HLA-B27:02	SRICSLSFSL	0.9999	0.6113	0.1905	19.5	0.2483	8.69	1/982	1/7748
SNV	Breast	SSFA2_S948L_6	HLA-C03:04	YSTQKLSVL	0.9999	0.9527	0.0478	20.71	0.1411	134.32	1/982	1/7748
SNV	Breast	SSFA2_S948L_6	HLA-C02:02	YSTQKLSVL	0.9497	0.8994	0.1016	311.1	0.3508	134.32	1/982	1/7748
SNV	Breast	STX17_L106V_2	HLA-A02:01	FVQLHLESV	0.9767	0.6973	0.2009	157.41	0.4663	32.69	1/982	1/7748
SNV	Breast	STX17_L106V_7	HLA-C03:04	AATAEFVQL	0.9998	0.9897	0.0767	32.13	0.17	32.69	1/982	1/7748
SNV	Breast	SYNE1_V4189M_2	HLA-A02:01	SMNTIIEKV	0.9969	0.6032	0.1134	3.52	0.075	3.27	1/982	1/7748
SNV	Breast	SYNE2_E5892Q_7	HLA-A02:01	VLKEQIQHL	0.991	0.6892	0.4625	27.5	0.2444	19.44	1/982	1/7748
SNV	Breast	SYNE2_E5892Q_7	HLA-C02:02	VLKEQIQHL	0.7356	0.9425	0.4878	330.04	0.3636	19.44	1/982	1/7748
SNV	Breast	SYTL3_E16Q_4	HLA-B40:01	LERQAILQV	0.9455	0.6204	0.1701	74.59	0.4274	7.78	1/982	1/7748
SNV	Breast	TACC2_L1463F_3	HLA-A02:01	TLFPAPPARL	0.9734	0.8408	0.7786	25.42	0.2377	5.73	1/982	1/7748
SNV	Breast	TBC1D32_P823L_6	HLA-A02:01	SLREVLTCV	0.9408	0.813	0.2375	137.48	0.4432	9.4	1/982	1/7748
SNV	Breast	TBC1D4_N113S_6	HLA-C03:04	SATQPSPAV	0.9872	0.9894	0.1349	36.51	0.1782	9.88	1/982	1/7748
SNV	Breast	TBC1D4_N113S_5	HLA-C03:04	ATQPSPAVF	0.9951	0.9935	0.2326	132.36	0.3048	9.88	1/982	1/7748
SNV	Breast	TBC1D4_N113S_5	HLA-C02:02	ATQPSPAVF	0.5898	0.9878	0.0648	78.12	0.1382	9.88	1/982	1/7748
SNV	Breast	TCF19_D67N_3	HLA-C03:04	RGNDWRVSL	0.9501	0.988	1.2489	262.67	0.3987	13.61	1/982	1/7748
SNV	Breast	TJP1_E1368Q_2	HLA-C02:02	FQNKPPAHI	0.777	0.9789	0.8301	122.84	0.1874	62.34	1/982	1/7748
SNV	Breast	TMEM80_R145Q_6	HLA-A02:01	ILEAVQLYL	0.9941	0.6661	0.4392	11.44	0.1694	6.81	1/982	1/7748
SNV	Breast	TMEM80_R145Q_10	HLA-A02:01	FLMGILEAVQL	0.9985	0.6263	0.8186	27.05	0.243	6.81	1/982	1/7748
SNV	Breast	TMEM80_R145Q_8	HLA-C03:04	MGILEAVQL	0.9992	0.9948	0.6799	410.31	0.4706	6.81	1/982	1/7748
SNV	Breast	TOB1_D95H_5	HLA-A02:01	SVWIHPFEV	0.9731	0.7028	0.0914	3.24	0.071	2123.4	1/982	1/7748
SNV	Breast	TP53BP2_D270N_1	HLA-B27:02	NRLYKELQL	0.9999	0.6953	0.2541	33.8	0.2942	47.06	1/982	1/7748
SNV	Breast	TP53BP2_D270N_7	HLA-C03:04	SAVAELNRL	0.9996	0.9856	0.2016	39.22	0.1835	47.06	1/982	1/7748
SNV	Breast	TSHZ3_T811M_6	HLA-A02:01	VLLSPMSTA	0.9633	0.6886	0.2851	178.27	0.4876	15	1/982	1/7748
SNV	Breast	TUBGCP4_Q284H_9	HLA-A02:01	ILFVGESVHM	0.9769	0.6059	0.6625	213.17	0.5173	8.52	1/982	1/7748
SNV	Breast	TUBGCP4_Q284H_7	HLA-C03:04	FVGESVHMF	0.9947	0.9948	0.2055	276.61	0.4068	8.52	1/982	1/7748
SNV	Breast	UBQLN1_Q539E_8	HLA-A02:01	ALAGVNPEL	0.9958	0.5256	0.2256	1.5	0.0225	178.5	1/982	1/7748
SNV	Breast	UBQLN1_Q539E_8	HLA-C03:04	ALAGVNPEL	0.9444	0.993	0.4955	322.01	0.4314	178.5	1/982	1/7748
SNV	Breast	UBQLN1_Q539E_8	HLA-C02:02	ALAGVNPEL	0.7737	0.9841	0.683	220.73	0.2822	178.5	1/982	1/7748
SNV	Breast	URB2_L800V_6	HLA-A02:01	FLHSPVFPEM	0.9881	0.7691	0.5218	144.17	0.4513	22.2	1/982	1/7748
SNV	Breast	URB2_L800V_8	HLA-C03:04	KAFLHSPVF	0.9724	0.9958	0.1971	7.1	0.0638	22.2	1/982	1/7748
SNV	Breast	URB2_L800V_8	HLA-C02:02	KAFLHSPVF	0.5505	0.9943	0.0793	112.03	0.1732	22.2	1/982	1/7748
SNV	Breast	USP4_Q81E_7	HLA-C03:04	FSDPESETL	0.9994	0.993	0.0222	58.88	0.219	45.81	1/982	1/7748
SNV	Breast	VNN2_D81N_9	HLA-B27:02	ARIIVTPENAL	1	0.5987	0.1638	493.35	0.5756	70.71	1/982	1/7748
SNV	Breast	VNN2_D81N_7	HLA-C03:04	IIVTPENAL	0.9969	0.9861	0.1739	99.78	0.2743	70.71	1/982	1/7748
SNV	Breast	WASL_D224H_1	HLA-A02:01	HLNNLDPEL	0.9884	0.6758	1.0719	7.57	0.1358	197.22	1/982	1/7748
SNV	Breast	WDR87_A831T_3	HLA-B27:02	VRTISNTEY	0.9976	0.5591	0.1248	9.19	0.1962	1.77	1/982	1/7748
SNV	Breast	WDR87_A831T_5	HLA-B27:02	SRVRTISNTEY	0.9999	0.6676	0.1006	143.84	0.4341	1.77	1/982	1/7748
SNV	Breast	XAB2_R138W_8	HLA-C02:02	RTFDRALWAL	0.9742	0.9924	0.6916	369.54	0.3882	15.4	1/982	1/7748
SNV	Breast	ZDBF2_D2038H_6	HLA-C03:04	HSWDNHIRF	0.9967	0.9867	0.4491	50.1	0.202	1.2	1/982	1/7748
SNV	Breast	ZEB1_R177T_1	HLA-C03:04	TGYKRFTSL	0.9954	0.9861	0.9659	186.23	0.3516	18.99	1/982	1/7748
SNV	Breast	ZKSCAN2_G719E_8	HLA-A02:01	RQWENLQEI	0.9924	0.7205	0.4542	14.35	0.1888	8.12	1/982	1/7748
SNV	Breast	ZKSCAN2_G719E_8	HLA-B40:01	RQWENLQEI	0.9295	0.5592	0.4758	494.04	0.6505	8.12	1/982	1/7748
SNV	Breast	ZNF22_D40H_6	HLA-C02:02	MTIRFHSSF	0.6926	0.9571	0.0566	315.39	0.3538	47.11	1/982	1/7748
SNV	Breast	ZNF423_E458K_7	HLA-A02:01	TLYNLNKHV	0.9674	0.5113	0.4709	49.02	0.2999	3.46	1/982	1/7748
SNV	Breast	ZNF430_R328Q_5	HLA-C03:04	RAFNQSSHL	0.9993	0.9907	0.0165	4.56	0.0455	9.21	1/982	1/7748
SNV	Breast	ZNF430_R328Q_5	HLA-C02:02	RAFNQSSHL	0.9881	0.9776	0.0365	78.44	0.1385	9.21	1/982	1/7748
SNV	Breast	ZNF462_E43Q_8	HLA-C03:04	VAEDNVNQL	0.9966	0.9911	0.0545	14.33	0.1075	1.7	1/982	1/7748
SNV	Breast	ZNF676_E77Q_9	HLA-B27:02	RRYDKCGHQNL	1	0.5992	0.0739	82.6	0.3768	28.66	1/982	1/7748
SNV	Breast	ZNF695_G348A_6	HLA-B27:02	RRIHTAEKTF	0.9999	0.5222	0.0096	3.61	0.1349	5.46	1/982	1/7748
SNV	Breast	ZNF707_E61K_4	HLA-B27:02	SRLKQWEEPW	0.9998	0.6353	0.1575	62.79	0.3513	1.9	1/982	1/7748
SNV	Breast	CPS1_V190A_8	HLA-B18:01	IEFEGQPADF	0.9279	0.825	0.1025	6.47	0.0443	2.17	1/982	1/7748
SNV	Breast	DOCK2_D501V_6	HLA-A68:01	AVPIEVMQR	0.9426	0.7191	0.6034	140.02	0.4344	15.93	1/982	1/7748
SNV	Breast	DOCK2_D501V_7	HLA-A68:01	VAVPIEVMQR	0.96	0.5172	0.3926	44.51	0.268	15.93	1/982	1/7748
SNV	Breast	DOCK2_D501V_5	HLA-B35:03	VPIEVMQRI	0.9789	0.8842	0.0927	49.26	0.0767	15.93	1/982	1/7748
SNV	Breast	FAM21C_E545V_10	HLA-A02:01	GLFSDEEDSV	0.988	0.5043	0.6242	13.41	0.1829	27.65	1/982	1/7748
SNV	Breast	FAM21C_E545V_6	HLA-B18:01	DEEDSVDLF	0.9512	0.8696	0.137	57.96	0.1248	27.65	1/982	1/7748
SNV	Breast	FXYD5_Q72H_3	HLA-B35:03	QPHTQTQQL	0.821	0.7624	0.0476	438.56	0.1699	91.3	1/982	1/7748
SNV	Breast	KRTCAP3_D151E_2	HLA-B18:01	TECPFDPTRIY	0.9871	0.8805	0.4532	36.64	0.1065	82.99	1/982	1/7748
SNV	Breast	THAP2_V39F_9	HLA-C07:01	RRKEWVRLF	0.9978	0.6724	0.0278	15.55	0.0315	7.21	1/982	1/7748
SNV	Breast	ZNF548_S18F_9	HLA-B18:01	FEDVAIYFF	0.9869	0.956	0.0666	31.47	0.1004	15.48	1/982	1/7748
SNV	Breast	ZNF548_S18F_2	HLA-C04:01	FFQEEWGHL	0.9376	0.9246	0.0765	252.62	0.1121	15.48	1/982	1/7748
SNV	Breast	ZNF548_S18F_10	HLA-C04:01	VFEDVAIYFF	0.9997	0.6528	0.3959	262.51	0.1139	15.48	1/982	1/7748
SNV	Breast	ERCC4_R267C_8	HLA-B35:01	KPFDKTICHY	0.9854	0.5778	0.1053	23.83	0.1877	16.12	1/982	1/7748
SNV	Breast	HEATR5B_L142F_9	HLA-B35:01	FPETVNNLF	0.9985	0.8455	0.0435	1.36	0.0191	29.57	1/982	1/7748
SNV	Breast	IL18R1_L218V_5	HLA-B35:01	VPVLVGPKL	0.9327	0.8649	0.1595	31.76	0.2082	2.39	1/982	1/7748
SNV	Breast	IP6K1_D43N_3	HLA-A30:01	RYNDHTVCK	0.8965	0.8589	0.1009	130.73	0.0663	40.66	1/982	1/7748
SNV	Breast	KIF23_W729S_2	HLA-B35:01	ESEQKIPTY	0.5329	0.5687	0.6479	404.78	0.4624	31.21	1/982	1/7748
SNV	Breast	NLGN4X_S650F_9	HLA-B35:01	TPANNPKHF	0.9945	0.77	0.2319	40.93	0.2285	24.64	1/982	1/7748
SNV	Breast	PCLO_D4431H_5	HLA-B35:01	HAMSHSEAY	0.9977	0.7824	0.0003	1.1	0.0063	4.83	1/982	1/7748
SNV	Breast	PIK3CB_E1051K_4	HLA-A30:01	ALRKSWTTK	0.9943	0.9109	0.0176	22.69	0.0132	38.09	1/982	1/7748
SNV	Breast	RASAL2_R79H_3	HLA-A30:01	RSHGLPKLK	0.9986	0.9569	0.017	54.96	0.0273	12.93	1/982	1/7748
SNV	Breast	RASAL2_R79H_3	HLA-A03:01	RSHGLPKLK	0.9893	0.7469	0.216	94.16	0.2757	12.93	1/982	1/7748
SNV	Breast	RPGR_E469V_3	HLA-B35:01	QPVEPDYLL	0.9049	0.9769	0.1866	14.61	0.1571	6.92	1/982	1/7748
SNV	Breast	SLC4A3_A748D_3	HLA-C04:01	STDVLGVLF	0.9997	0.6971	0.1141	456.9	0.1481	28.62	1/982	1/7748
SNV	Breast	TC2N_F130L_6	HLA-B35:01	DVYNPLYMY	0.9893	0.803	0.7256	27.2	0.1965	135.03	1/982	1/7748
SNV	Breast	TC2N_F130L_8	HLA-C07:02	SYDVYNPLY	0.752	0.8373	0.1575	148.94	0.2365	135.03	1/982	1/7748
SNV	Breast	TC2N_F130L_8	HLA-C04:01	SYDVYNPL	0.9999	0.6024	0.0281	468.1	0.1498	135.03	1/982	2/7748
SNV	Breast	TC2N_F130L_8	HLA-C04:01	SYDVYNPLY	0.9322	0.5588	0.1724	10.47	0.0225	135.03	1/982	2/7748
SNV	Breast	TC2N_F130L_8	HLA-C04:01	SYDVYNPLYM	0.9998	0.5366	0.0939	25.49	0.0403	135.03	1/982	2/7748
SNV	Breast	TET1_V326I_7	HLA-A30:01	STSPTSIIK	0.9805	0.6535	0.1293	175.62	0.0813	1.55	1/982	1/7748
SNV	Breast	ABL2_L244F_9	HLA-C07:02	SRFSTLAEF	0.9164	0.9685	0.0016	4.77	0.0179	21.34	1/982	1/7748
SNV	Breast	ABL2_L244F_9	HLA-C07:01	SRFSTLAEF	0.9996	0.8295	0.0025	11.14	0.0219	21.34	1/982	1/7748
SNV	Breast	ARID1A_Q1947H_6	HLA-A03:01	GISPAHSHR	0.9465	0.6358	0.2905	493.64	0.5034	68.45	1/982	1/7748
SNV	Breast	CAPG_L61V_6	HLA-B18:03	EEVSHVHLW	0.9788	0.8092	0.0551	101.01	0.0512	256.31	1/982	1/7748
SNV	Breast	CASP8_S338F_10	HLA-B18:03	QEAPIYELTF	0.9607	0.9294	0.1365	288.61	0.0958	10.44	1/982	1/7748
SNV	Breast	CTH_P198T_9	HLA-A02:01	FMSPYFQRT	0.9552	0.5638	0.1121	370.41	0.6093	4.56	1/982	1/7748
SNV	Breast	CTH_P198T_6	HLA-C07:02	PYFQRTLAL	0.6447	0.8811	0.7595	96.27	0.1905	4.56	1/982	1/7748
SNV	Breast	NFYC_P405L_2	HLA-A02:01	ALLPGMTSL	0.9761	0.6037	0.1104	1.56	0.0296	25.43	1/982	1/7748
SNV	Breast	NIPAL3_A97V_9	HLA-A02:01	GVFASYAFV	0.9752	0.5535	0.163	332.05	0.5891	22.81	1/982	1/7748
SNV	Breast	NIPAL3_A97V_5	HLA-C07:02	SYAFVPLSL	0.593	0.9625	0.0548	6.32	0.0295	22.81	1/982	1/7748
SNV	Breast	NIPAL3_A97V_5	HLA-C07:01	SYAFVPLSL	0.5906	0.7495	0.841	262.43	0.1271	22.81	1/982	1/7748
SNV	Breast	PALM_V97L_8	HLA-A02:01	RLEKEIELL	0.972	0.7296	0.8511	486.53	0.6694	17.35	1/982	1/7748
SNV	Breast	PALM_V97L_9	HLA-C07:02	SRLEKEIEL	0.9861	0.9868	0.0466	12.55	0.0579	17.35	1/982	1/7748
SNV	Breast	PALM_V97L_9	HLA-C07:01	SRLEKEIEL	0.9995	0.9073	0.039	23.33	0.0417	17.35	1/982	1/7748
SNV	Breast	PIK3CA_M1004I_1	HLA-A02:01	IMLGSGMPEL	0.9888	0.5256	0.4301	65.16	0.3364	25.17	1/982	2/7748
SNV	Breast	PKN2_E827Q_5	HLA-A02:01	FLAPQVLTET	0.9878	0.7993	0.6242	184.97	0.4939	37.87	1/982	1/7748
SNV	Breast	PKN2_E827Q_8	HLA-B07:02	TPEFLAPQVL	0.816	0.5303	0.3837	187.94	0.3158	37.87	1/982	1/7748
SNV	Breast	PLEKHM1_F1013V_7	HLA-B18:03	HDIIFPVEF	0.9501	0.9725	0.049	205.78	0.0781	13.22	1/982	1/7748
SNV	Breast	RAP1GDS1_H539R_7	HLA-A02:01	KLVQILRRL	0.9405	0.6504	0.5524	459.37	0.6568	69.75	1/982	1/7748
SNV	Breast	TCP11L2_A287D_1	HLA-B18:03	DENTSKPSL	0.985	0.8134	0.1584	406.83	0.1114	5.04	1/982	1/7748
SNV	Breast	TRAPPC8_K1270I_6	HLA-C07:02	LRTIGIEAF	0.8198	0.9801	0.2011	127.69	0.2199	25.29	1/982	1/7748
SNV	Breast	TRAPPC8_K1270I_6	HLA-C07:01	LRTIGIEAF	0.9923	0.8572	0.1176	396.84	0.1584	25.29	1/982	1/7748
SNV	Breast	DHX9_R863H_6	HLA-B35:01	LPIEPHFGKM	0.9911	0.9047	0.2715	382.49	0.4552	192.57	1/982	1/7748
SNV	Breast	DNMT3A_G890D_6	HLA-B57:01	RQRLLDRSW	0.9669	0.9399	0.8017	71.64	0.2589	8.59	1/982	1/7748
SNV	Breast	MKI67_N2295S_2	HLA-B57:01	GSLPGSKRW	0.9989	0.9879	0.0432	1.21	0.0052	31.83	1/982	1/7748
SNV	Breast	MKI67_N2295S_3	HLA-B57:01	PGSLPGSKRW	0.9963	0.971	0.9855	44.59	0.2231	31.83	1/982	1/7748
SNV	Breast	MKI67_N2295S_4	HLA-B57:01	LPGSLPGSKRW	0.9999	0.9784	0.5847	24.59	0.1772	31.83	1/982	1/7748
SNV	Breast	ANO6_R399H_3	HLA-C07:02	KRHQAELEY	0.8601	0.9046	0.0638	194.29	0.2665	58.85	1/982	1/7748
SNV	Breast	ARID5B_R725S_2	HLA-C15:05	ASDDLCSSL	0.9839	0.9211	0.0214	251.86	0.4038	27.6	1/982	1/7748
SNV	Breast	CILP_E648K_5	HLA-C07:02	FINDKGDTF	0.7278	0.7997	0.418	334.43	0.3381	134.92	1/982	1/7748
SNV	Breast	CLCN5_C166Y_3	HLA-C15:05	YAYGSGIPEI	0.9995	0.9563	0.4108	58.05	0.1971	8.74	1/982	1/7748
SNV	Breast	DMPK_E118A_3	HLA-C07:02	FRAERDVLV	0.829	0.9393	0.3008	69.89	0.1618	2.63	1/982	1/7748
SNV	Breast	EGFR_E114K_4	HLA-C07:02	MYYKNSYAL	0.6939	0.8688	0.0435	3.18	0.0097	34.12	1/982	1/7748
SNV	Breast	MROH1_H898Y_7	HLA-C07:02	LYLETLYAL	0.5543	0.9615	0.3459	125.6	0.2181	20.46	1/982	1/7748
SNV	Breast	PIK3CA_R398H_3	HLA-B07:02	LPHAARLCL	0.9989	0.5815	0.0067	3.19	0.0548	15.71	1/982	1/7748
SNV	Breast	SERPINA1_V326I_8	HLA-C15:05	GTYDLKSIL	0.9992	0.8363	0.7409	57.26	0.1952	239.45	1/982	1/7748
SNV	Breast	SERPINA1_V326I_3	HLA-C15:05	KSILGQLGI	0.998	0.715	0.4803	93.18	0.2534	239.45	1/982	1/7748
SNV	Breast	SH3RF3_R829H_4	HLA-C07:02	ERYHVVVSY	0.8021	0.8593	0.2011	55.14	0.1416	4.05	1/982	1/7748
SNV	Breast	ARNTL_T140S_8	HLA-B18:01	TEANYKPSF	0.9869	0.8579	0.046	3.78	0.0277	7.3	1/982	1/7748
SNV	Breast	BRE_V21M_9	HLA-B15:01	MLSPFISSM	0.9991	0.8355	0.0278	90.7	0.2775	28.81	1/982	1/7748
SNV	Breast	BRE_V21M_9	HLA-C12:03	MLSPFISSM	0.9992	0.9882	0.0638	6.89	0.0875	28.81	1/982	2/7748
SNV	Breast	BRE_V21M_1	HLA-C12:03	MVRNGKVGL	0.954	0.9793	1.8123	57.59	0.3929	28.81	1/982	2/7748
SNV	Breast	C5orf42_N2285T_5	HLA-B15:01	ASHLTVSQY	0.9993	0.9353	0.0902	17.8	0.1325	11.09	1/982	1/7748
SNV	Breast	C5orf42_N2285T_5	HLA-C12:03	ASHLTVSQY	0.7146	0.9761	0.1394	165.23	0.6669	11.09	1/982	1/7748
SNV	Breast	C9orf43_K241E_4	HLA-C12:03	AMMEKNLPL	0.9977	0.9323	0.6452	381.79	0.9669	1.64	1/982	1/7748
SNV	Breast	CAPRIN2_R215Q_2	HLA-B15:01	LQTILQVQY	0.9993	0.7722	0.107	210.03	0.3777	3.66	1/982	1/7748
SNV	Breast	CDK16_G485V_6	HLA-B15:01	SMPDSVRPAF	0.9994	0.8641	0.3791	326.11	0.4458	50.39	1/982	1/7748
SNV	Breast	CDK16_G485V_2	HLA-C12:03	SVRPAFRVV	0.8826	0.9463	0.5869	21.74	0.2222	50.39	1/982	1/7748
SNV	Breast	CEP72_A548T_7	HLA-C12:03	KSADTATTL	0.9931	0.9347	0.0216	4.22	0.0461	7.63	1/982	1/7748
SNV	Breast	COL24A1_N211T_5	HLA-B15:01	SMNNTSIHF	0.9987	0.8838	0.009	2.35	0.0191	1.09	1/982	1/7748
SNV	Breast	COL24A1_N211T_5	HLA-C12:03	SMNNTSIHF	0.9295	0.9848	0.7194	363.1	0.948	1.09	1/982	1/7748
SNV	Breast	DLL1_R598H_1	HLA-B18:01	HEKDISVSI	0.9155	0.88	0.0892	28.44	0.0962	6.95	1/982	1/7748
SNV	Breast	FAT4_K4648T_9	HLA-B15:01	KQFRSHTPTF	0.9996	0.7044	0.1041	8.06	0.0779	1.98	1/982	1/7748
SNV	Breast	FAT4_K4648T_6	HLA-C12:03	RSHTPTFSI	0.8438	0.9604	0.1896	53.55	0.3802	1.98	1/982	1/7748
SNV	Breast	N4BP2_S719Y_9	HLA-B15:01	YSKTDTDSY	0.9987	0.6914	0.2045	53.77	0.2257	8.4	1/982	1/7748
SNV	Breast	N4BP2_S719Y_9	HLA-C12:03	YSKTDTDSY	0.5981	0.9208	0.278	294.71	0.8722	8.4	1/982	1/7748
SNV	Breast	P2RX7_E186K_7	HLA-B15:01	ALLNSAKNF	0.9787	0.8804	0.5596	58.55	0.235	9.44	1/982	1/7748
SNV	Breast	P2RX7_E186K_4	HLA-C12:03	NSAKNFTVL	0.9848	0.9904	0.1956	69.83	0.4355	9.44	1/982	1/7748
SNV	Breast	P2RX7_E186K_3	HLA-C12:03	SAKNFTVLI	0.9293	0.9809	0.1311	26.79	0.2546	9.44	1/982	1/7748
SNV	Breast	PGBD2_R517Q_2	HLA-B15:01	FQRYIACVY	0.9997	0.8088	0.0098	94.48	0.2812	14.92	1/982	1/7748
SNV	Breast	PGBD2_R517Q_9	HLA-B15:01	AQVDLLAFQRY	1	0.7736	0.9351	145.62	0.3299	14.92	1/982	1/7748
SNV	Breast	PLEKHA6_R1038W_1	HLA-C12:03	WGADSSYTM	0.8045	0.9851	1.4168	93.63	0.5046	25.38	1/982	1/7748
SNV	Breast	PLEKHH1_F714L_7	HLA-B15:01	ALVGKILYY	0.9971	0.797	0.1541	7.1	0.0674	8.73	1/982	1/7748
SNV	Breast	PRPF40A_R837I_7	HLA-B15:01	SSAESEISY	0.9779	0.8433	0.2672	39.65	0.1942	53.8	1/982	1/7748
SNV	Breast	SGMS1_A20V_4	HLA-B18:01	LENVMPEY	0.9892	0.9096	0.1044	111.37	0.1608	22.38	1/982	1/7748
SNV	Breast	TSHZ1_I986V_6	HLA-C12:03	TASTYVSHL	0.9978	0.9723	0.0376	50.39	0.3696	11.3	1/982	1/7748
SNV	Breast	TSHZ1_I986V_2	HLA-C12:03	YVSHLETHL	0.9982	0.9904	0.1564	63.57	0.4135	11.3	1/982	1/7748
SNV	Breast	YTHDC1_L389I_7	HLA-B18:01	NEKKLNIAF	0.993	0.8826	0.0161	1.55	0.005	49.97	1/982	1/7748
SNV	Breast	YTHDC1_L389I_1	HLA-C12:03	IAFRSARSV	0.9823	0.9704	0.0612	11.79	0.1416	49.97	1/982	1/7748
SNV	Breast	ZFHX4_S2228F_1	HLA-C12:03	FSRTRFTDY	0.5313	0.8872	0.1896	146.02	0.6277	2.07	1/982	1/7748
SNV	Breast	ZSCAN12_E92K_7	HLA-B18:01	LELLVLKQF	0.9979	0.8316	0.0509	35.57	0.1053	4.94	1/982	1/7748
SNV	Breast	CCT6B_I119T_5	HLA-B35:01	HPRITAEGF	0.9733	0.8139	0.1797	10.44	0.132	4.33	1/982	1/7748
SNV	Breast	CPT2_N208S_7	HLA-B35:01	YGAYLVSAY	0.9895	0.7607	0.0969	47.76	0.2409	31.92	1/982	1/7748
SNV	Breast	CPT2_N208S_1	HLA-B35:01	SAYPLDMSQY	0.9962	0.8358	0.4404	21.99	0.1824	31.92	1/982	1/7748
SNV	Breast	RB1CC1_C328F_1	HLA-C04:01	FFDSMSRL	1	0.8286	0.0091	7.88	0.0183	60.68	1/982	1/7748
SNV	Breast	RTTN_I2123F_8	HLA-B35:01	SPLLPLLFF	0.9869	0.7287	0.0693	121.21	0.3271	6.51	1/982	1/7748
SNV	Breast	C1orf112_H8N_9	HLA-B08:01	LPHMNNLTL	0.7666	0.6069	0.0419	169.21	0.2184	5.24	1/982	1/7748
SNV	Breast	DICER1_C1510Y_1	HLA-A24:02	YYLDPSKAV	0.9633	0.6084	0.4274	62.88	0.3906	30.1	1/982	1/7748
SNV	Breast	DICER1_C1510Y_1	HLA-C06:02	YYLDPSKAV	0.6493	0.9949	0.225	391.06	0.183	30.1	1/982	1/7748
SNV	Breast	PPFIA1_S1174F_1	HLA-B08:01	FMQPKKMQM	0.9971	0.6384	0.0032	3.39	0.013	80.21	1/982	1/7748
SNV	Breast	AFMID_E250K_3	HLA-B07:02	SPKFHRQSW	0.9875	0.6286	0.2621	306.54	0.3589	19.61	1/982	1/7748
SNV	Breast	AFMID_E250K_1	HLA-C07:02	KFHRQSWEF	0.7312	0.9393	0.418	349.31	0.3445	19.61	1/982	1/7748
SNV	Breast	ATAD2_D415H_6	HLA-A02:01	SLADVHPMQL	0.9977	0.593	0.5114	2.95	0.0644	57.87	1/982	1/7748
SNV	Breast	ATAD2_D415H_5	HLA-C02:02	LADVHPMQL	0.897	0.9738	0.1944	123.52	0.1882	57.87	1/982	1/7748
SNV	Breast	CTPS1_R454K_7	HLA-B27:02	MRLGKRKTL	0.9991	0.5406	0.1638	345.95	0.5338	16.93	1/982	1/7748
SNV	Breast	CTPS1_R454K_7	HLA-B27:02	MRLGKRKTLF	1	0.536	0.0388	49.58	0.3293	16.93	1/982	1/7748
SNV	Breast	CTPS1_R454K_7	HLA-C07:02	MRLGKRKTL	0.9008	0.9589	0.1136	21.11	0.0789	16.93	1/982	1/7748
SNV	Breast	DCTN2_E87K_1	HLA-A02:01	KMLGEGLGV	0.9943	0.8876	0.1304	2.91	0.0634	118.91	1/982	1/7748
SNV	Breast	DOCK11_S1935F_1	HLA-C02:02	FTDVDMIQL	0.7434	0.9655	0.4376	77.68	0.1378	12.83	1/982	1/7748
SNV	Breast	GTPBP10_L19P_6	HLA-C07:02	NFIDKPRLF	0.8287	0.7901	0.0414	10.04	0.0492	10	1/982	1/7748
SNV	Breast	JUN_E112K_3	HLA-C02:02	FAKGFVRAL	0.6501	0.9855	0.009	215.97	0.2786	143.54	1/982	1/7748
SNV	Breast	NBPF11_E626K_4	HLA-A02:01	LLDKKEPEV	0.997	0.8956	0.4818	3.78	0.0785	3.12	1/982	1/7748
SNV	Breast	PHLPP1_E1589K_8	HLA-A02:01	HLLQVPAKA	0.9275	0.635	0.5313	333.04	0.5896	7.79	1/982	1/7748
SNV	Breast	SLC25A14_Q189K_3	HLA-A24:02	IYKQEGTRGLW	0.9995	0.7697	0.7796	462.47	0.6834	12.71	1/982	1/7748
SNV	Breast	SLC5A3_I12V_9	HLA-A02:01	VLDTADIAV	0.9917	0.7033	0.3222	3.08	0.0679	36.84	1/982	1/7748
SNV	Breast	SLC5A3_I12V_10	HLA-A02:01	AVLDTADIAV	0.9893	0.762	0.4576	128.16	0.4312	36.84	1/982	1/7748
SNV	Breast	SLC5A3_I12V_9	HLA-A02:01	VLDTADIAVV	0.9924	0.816	0.6989	181.81	0.491	36.84	1/982	1/7748
SNV	Breast	SMARCAL1_E344K_6	HLA-B27:02	SRAYFKADISY	1	0.6154	0.1575	1.88	0.0774	22.14	1/982	1/7748
SNV	Breast	TP53_C141Y_3	HLA-A02:01	KTYPVQLWV	0.9586	0.7715	0.3449	156.1	0.4649	146.06	2/982	7/7748
SNV	Breast	ZFHX4_E2641K_8	HLA-A02:01	MLDHIARKV	0.9952	0.77	0.2206	50.54	0.3038	4.63	1/982	1/7748
SNV	Breast	ZFHX4_E2641K_9	HLA-A02:01	KMLDHIARKV	0.9967	0.6824	0.3101	10.85	0.1652	4.63	1/982	1/7748
SNV	Breast	ZNF677_R259T_6	HLA-B27:02	GRTHITEKSY	0.9995	0.5991	0.0739	6.98	0.1812	1.95	1/982	1/7748
SNV	Breast	ANO7_P267R_8	HLA-B44:03	FEILAKTRY	0.9953	0.9653	0.0262	2.44	0.0486	2.22	1/982	1/7748
SNV	Breast	C3orf70_F108L_9	HLA-C17:01	SLTEHFLKL	0.5204	0.9281	0.0225	40.15	0.1149	1.22	1/982	1/7748
SNV	Breast	CCDC174_R215P_5	HLA-B44:03	KELQPQQW	0.9986	0.9945	0.1101	27.55	0.1746	13.05	1/982	1/7748
SNV	Breast	CENPE_R967Q_5	HLA-B41:02	QEQLQNAL	0.9197	0.6274	0.2427	129.17	0.5045	4.99	1/982	1/7748
SNV	Breast	CEP85_T514S_3	HLA-C17:01	KVSELESLL	0.63	0.9151	0.3906	169.33	0.279	9.11	1/982	1/7748
SNV	Breast	EVA1C_A407V_7	HLA-C17:01	YSSIEAVEL	0.7168	0.9413	0.0851	288.72	0.3663	7.39	1/982	1/7748
SNV	Breast	GSS_V380A_4	HLA-B44:03	EEMAQALKQL	0.9973	0.9239	0.1675	60.24	0.2447	169.23	1/982	1/7748
SNV	Breast	INPP5D_R645H_10	HLA-B44:03	EEITFAPTYH	0.9759	0.9468	0.7412	106.61	0.2882	9.91	1/982	1/7748
SNV	Breast	INPP5D_R645H_10	HLA-B44:03	EEITFAPTYHF	0.9998	0.95	0.1384	41.34	0.2097	9.91	1/982	1/7748
SNV	Breast	KLC3_R206H_6	HLA-B44:03	YEIPAHLRTL	0.8454	0.9416	0.2582	94.63	0.2794	4.19	1/982	1/7748
SNV	Breast	LPIN2_L411I_1	HLA-B44:03	IEPEVAALY	0.9441	0.9647	0.1353	8.58	0.115	35.94	1/982	1/7748
SNV	Breast	PIK3CA_E545K_5	HLA-B44:03	SEITKQEKDF	0.9989	0.8114	0.0872	10.32	0.1253	7.55	6/982	18/7748
SNV	Breast	POLG2_E434G_4	HLA-C04:01	KYDGMSILF	0.9733	0.5237	0.0325	2.28	0.0059	4.62	1/982	1/7748
SNV	Breast	RACGAP1_L553R_7	HLA-B41:02	QENIDPRHV	0.5943	0.5062	0.2631	335.72	0.6868	41.02	1/982	1/7748
SNV	Breast	RACGAP1_L553R_7	HLA-B44:03	QENIDPRHV	0.9188	0.9204	0.3942	99.5	0.2831	41.02	1/982	1/7748
SNV	Breast	RACGAP1_L553R_7	HLA-B44:03	QENIDPRHVI	0.9868	0.9354	0.4644	47.22	0.222	41.02	1/982	1/7748
SNV	Breast	RAD54B_D475H_8	HLA-B44:03	QEFFALIHF	0.9917	0.9591	0.009	3.6	0.0722	1.37	1/982	1/7748
SNV	Breast	SCG2_P178H_8	HLA-B44:03	EENSRDNHF	0.9974	0.8478	0.1289	9.48	0.1206	2.59	1/982	1/7748
SNV	Breast	SCG2_P178H_9	HLA-B44:03	YEENSRDNHF	0.9923	0.8459	0.2355	487.92	0.41	2.59	1/982	1/7748
SNV	Breast	SLC10A7_I78T_6	HLA-C17:01	HLFIQTFTL	0.5468	0.8144	0.2884	210.66	0.3129	4.07	1/982	1/7748
SNV	Breast	CDS1_Y137F_1	HLA-B13:02	FDLPWFRTL	0.8003	0.9323	0.1613	283.29	0.1027	36.8	1/982	1/7748
SNV	Breast	CDS1_Y137F_7	HLA-C07:02	YRVYHSFDL	0.8929	0.9553	0.1575	22	0.0806	36.8	1/982	1/7748
SNV	Breast	CPVL_V129F_3	HLA-C07:02	YVFTSNMTL	0.7412	0.9087	1.3078	28.61	0.0953	35.88	1/982	1/7748
SNV	Breast	CPVL_V129F_3	HLA-C06:02	YVFTSNMTL	0.9448	0.9939	0.3257	357.93	0.1744	35.88	1/982	1/7748
SNV	Breast	DYRK4_D392E_6	HLA-C07:02	LRMTPEQAL	0.8894	0.9768	0.1108	55.82	0.1427	18.74	1/982	1/7748
SNV	Breast	MCF2L_Q947E_8	HLA-C07:02	IRKVLTSEL	0.8298	0.9576	0.1834	195.71	0.2674	23.29	1/982	1/7748
SNV	Breast	POLR3D_A216G_7	HLA-B13:02	MEVDIPGVKV	0.9953	0.745	0.0288	222.77	0.0852	27.69	1/982	1/7748
SNV	Breast	SHB_H412P_5	HLA-A03:01	QIWYPGAISR	0.9317	0.7183	1.671	230.45	0.3815	16.15	1/982	1/7748
SNV	Breast	SMOC2_L347V_9	HLA-B13:02	SEPDPSHTV	0.9922	0.7538	0.082	453.65	0.1464	56.89	1/982	1/7748
SNV	Breast	CNTNAP1_S1085A_8	HLA-B35:01	NVTGEEVAF	0.7475	0.9717	0.2489	47.43	0.2403	1.35	1/982	1/7748
SNV	Breast	COASY_P111T_5	HLA-B35:01	LAHPTEVVL	0.9589	0.9248	0.1835	374.37	0.4525	44.8	1/982	1/7748
SNV	Breast	COASY_P111T_3	HLA-B35:01	HPTEVVLTDF	0.9942	0.8801	0.2116	9.63	0.1252	44.8	1/982	1/7748
SNV	Breast	NBEAL2_D1994N_4	HLA-C07:02	FFINQANYF	0.6506	0.94	0.1834	21.23	0.0791	15.34	1/982	1/7748
SNV	Breast	WDR27_V138F_7	HLA-C04:01	SLDDHVFAV	0.9996	0.8188	0.023	16.48	0.033	3.68	1/982	1/7748
SNV	Breast	YY1AP1_I500V_3	HLA-B35:01	HPVQPATVL	0.9966	0.8798	0.0984	1.86	0.0337	79.1	1/982	1/7748
SNV	Breast	YY1AP1_I500V_3	HLA-B07:02	HPVQPATVL	0.9981	0.718	0.0222	1.31	0.0137	79.1	1/982	1/7748
SNV	Breast	ACBD3_R523T_8	HLA-B57:01	RSKSVYYTV	0.9564	0.9468	0.3331	201.54	0.3668	219.26	1/982	1/7748
SNV	Breast	ACBD3_R523T_6	HLA-B57:01	KSVYYTVYY	0.9919	0.764	0.539	36.41	0.2075	219.26	1/982	1/7748
SNV	Breast	ANKRD11_A2498V_9	HLA-C05:01	VIAPPPSLV	0.998	0.9752	0.3344	25.67	0.1348	9.23	1/982	2/7748
SNV	Breast	ANKRD11_A2498V_2	HLA-C05:01	LVEPLKELF	0.9995	0.9256	0.311	285.49	0.3326	9.23	1/982	2/7748
SNV	Breast	CDK8_D264N_6	HLA-B57:01	MGFPANKDW	0.9983	0.9709	0.0951	4.11	0.0528	9.57	1/982	1/7748
SNV	Breast	CDK8_D264N_7	HLA-B57:01	VMGFPANKDW	0.9986	0.9842	0.5463	309.89	0.4267	9.57	1/982	1/7748
SNV	Breast	CHM_S53L_4	HLA-B57:01	FSFLGLLSW	0.999	0.9955	0.004	24.77	0.1778	12.35	1/982	1/7748
SNV	Breast	CHM_S53L_5	HLA-B57:01	SFSFLGLLSW	0.9953	0.9891	0.7097	120.62	0.2961	12.35	1/982	1/7748
SNV	Breast	CHM_S53L_6	HLA-B57:01	ASFSFLGLLSW	0.9999	0.9826	0.0394	190.87	0.3589	12.35	1/982	1/7748
SNV	Breast	DOCK9_D1808H_3	HLA-B18:01	FEHEDGKEY	0.9984	0.9275	0.0147	2.44	0.0107	21.14	1/982	1/7748
SNV	Breast	DOCK9_D1808H_1	HLA-B18:01	HEDGKEYIY	0.9951	0.869	0.0569	7.41	0.05	21.14	1/982	1/7748
SNV	Breast	DOCK9_D1808H_3	HLA-B18:01	FEHEDGKEYIY	0.9994	0.8689	0.1025	168.4	0.1887	21.14	1/982	1/7748
SNV	Breast	FN1_G573R_7	HLA-B57:01	GTFYQIRDSW	0.9998	0.9429	0.1263	5.7	0.0701	70.79	1/982	1/7748
SNV	Breast	GANAB_I361M_5	HLA-B18:01	SETGMIDVF	0.9726	0.9089	0.033	7.3	0.0494	458.06	1/982	1/7748
SNV	Breast	IRF3_G335E_2	HLA-B18:01	EESGRSPRY	0.9937	0.865	0.0689	21.14	0.0848	30.59	1/982	1/7748
SNV	Breast	KIRREL_G127R_5	HLA-C06:02	TRIDRGPVIL	0.9774	0.9933	0.3362	192.46	0.1295	3.83	1/982	1/7748
SNV	Breast	KIRREL_G127R_4	HLA-C05:01	RIDRGPVIL	0.9999	0.9461	0.0334	2.11	0.0268	3.83	1/982	1/7748
SNV	Breast	KIRREL_G127R_4	HLA-C05:01	RIDRGPVILL	0.9999	0.9831	0.1501	36.87	0.1519	3.83	1/982	1/7748
SNV	Breast	LRSAM1_E423K_1	HLA-C05:01	KMDERFQQI	0.9999	0.8719	0.0133	4.52	0.0519	23.01	1/982	1/7748
SNV	Breast	LZTR1_G286R_4	HLA-C06:02	RRYRHTMVAF	0.8321	0.9765	0.4075	397.01	0.1845	8.71	1/982	1/7748
SNV	Breast	MPEG1_D27Y_10	HLA-B57:01	KSGKPSGEMY	0.9964	0.9737	0.3734	72.12	0.2594	12.1	1/982	1/7748
SNV	Breast	NOL8_D23E_4	HLA-B18:01	SEAELQNQF	0.9901	0.9307	0.0193	2.08	0.0084	18.61	1/982	1/7748
SNV	Breast	NOL8_D23E_8	HLA-C05:01	SQDISEAEL	0.9999	0.9507	0.1271	273.09	0.3269	18.61	1/982	1/7748
SNV	Breast	NUS1_A118G_5	HLA-C05:01	FSDIGSLV	1	0.7637	0.0545	132.12	0.2436	34.81	1/982	1/7748
SNV	Breast	NUS1_A118G_5	HLA-C05:01	FSDIGSLVV	0.9999	0.8906	0.018	1.47	0.0134	34.81	1/982	1/7748
SNV	Breast	PIK3CA_E545K_3	HLA-B57:01	ITKQEKDFLW	1	0.9568	0.0602	3.56	0.0443	9.85	4/982	14/7748
SNV	Breast	PPFIA3_S461F_1	HLA-C05:01	FLSEEIANM	0.9989	0.9621	0.2674	13.94	0.1064	5.95	1/982	1/7748
SNV	Breast	PRKCB_D365N_1	HLA-B18:01	NELYAVKIL	0.9501	0.8451	0.2268	20.48	0.0837	1.45	1/982	1/7748
SNV	Breast	PTK7_E765K_5	HLA-B18:01	AEIQKEVAL	0.9234	0.7985	0.1584	150.73	0.1824	31.23	1/982	1/7748
SNV	Breast	PTPRB_E167K_6	HLA-B57:01	STSWNKYTF	0.9971	0.9594	0.2453	30.27	0.1932	8.72	1/982	1/7748
SNV	Breast	PTPRB_E167K_8	HLA-B18:01	QESTSWNKY	0.9913	0.83	0.0466	50.56	0.1194	8.72	1/982	1/7748
SNV	Breast	RAB35_F45L_4	HLA-C05:01	GVDLKIRTV	0.9999	0.9397	0.1154	246.92	0.3142	32.63	1/982	1/7748
SNV	Breast	SZT2_S1087L_4	HLA-B57:01	ATFLDVQRL	0.9946	0.9924	0.9159	355.07	0.4446	11.29	1/982	1/7748
SNV	Breast	SZT2_S1087L_2	HLA-C05:01	FLDVQRLAA	0.9997	0.9419	0.5549	410.79	0.3785	11.29	1/982	1/7748
SNV	Breast	TMCC3_K364N_6	HLA-B57:01	ASIEENVAY	0.8335	0.9766	0.5757	178.33	0.349	53.36	1/982	1/7748
SNV	Breast	TMCC3_K364N_3	HLA-B18:01	EENVAYQAY	0.9972	0.7968	0.0096	1.46	0.0044	53.36	1/982	1/7748
SNV	Breast	TMCC3_K364N_4	HLA-B18:01	IEENVAYQAY	0.9903	0.8901	0.0696	107.94	0.1582	53.36	1/982	1/7748
SNV	Breast	TTI1_A968T_3	HLA-B57:01	ISTRAGPVY	0.9223	0.8405	0.6565	87.44	0.2731	17.25	1/982	1/7748
SNV	Breast	USP7_G1004E_4	HLA-B57:01	GTFEIPFLL	0.9557	0.9481	0.5138	177.39	0.3482	85.07	1/982	1/7748
SNV	Breast	USP7_G1004E_2	HLA-B18:01	FEIPFLLRI	0.9674	0.891	0.1156	456.74	0.2552	85.07	1/982	1/7748
SNV	Breast	USP7_G1004E_4	HLA-C05:01	GTFEIPFLL	0.9671	0.9598	1.452	113.55	0.2313	85.07	1/982	1/7748
SNV	Breast	ZNF106_M374I_4	HLA-B57:01	KSEIIEKPLF	0.9994	0.9514	0.8187	152.64	0.3263	32.23	1/982	1/7748
SNV	Breast	ZNF106_M374I_3	HLA-B18:01	SEIIEKPLF	0.9923	0.9584	0.0285	6.56	0.0449	32.23	1/982	1/7748
SNV	Breast	ZNF121_H78Y_10	HLA-B57:01	KAFSLPPNVY	0.9984	0.9552	0.5757	27.31	0.1853	19.97	1/982	1/7748
SNV	Breast	ZNF41_R717T_7	HLA-B57:01	KSHTGETHY	0.9954	0.96	0.1374	12.79	0.1227	13.48	1/982	1/7748
SNV	Breast	ZNF766_S147L_3	HLA-B57:01	SVLPLQRIY	0.9627	0.8164	1.1101	87.96	0.2736	26.9	1/982	1/7748
SNV	Breast	CCDC80_M223L_7	HLA-C03:04	SLIPKLLSF	0.9714	0.9841	0.4136	125.1	0.2978	75.48	1/982	1/7748
SNV	Breast	DYRK1A_Q61H_4	HLA-C03:04	YSDHIQQPL	0.9996	0.981	0.0195	75.62	0.2454	31.14	1/982	1/7748
SNV	Breast	EML1_V255L_1	HLA-A02:01	LLYNVEEQL	0.9903	0.5817	0.4738	6.35	0.1217	6.23	1/982	1/7748
SNV	Breast	FIG4_L359H_7	HLA-C03:04	FAHVAAHHF	0.999	0.9942	0.0071	19.14	0.1345	81.41	1/982	1/7748
SNV	Breast	FIG4_L359H_4	HLA-C03:04	VAAHHFDQM	0.9988	0.9908	0.0149	70.12	0.2374	81.41	1/982	1/7748
SNV	Breast	GFM2_T129A_1	HLA-C04:01	AFDWKGYRV	0.9943	0.9034	0.0471	7.04	0.0165	17.42	1/982	1/7748
SNV	Breast	HSPA2_D398N_3	HLA-C03:04	LLNVTPLSL	0.9807	0.9772	0.6799	276.03	0.4065	127.42	1/982	1/7748
SNV	Breast	LRRK2_L1304F_5	HLA-B44:03	DELHFNFDF	0.9863	0.9418	0.1128	325.99	0.3753	2.13	1/982	1/7748
SNV	Breast	MIPEP_S329F_9	HLA-B44:03	LEKLSDKLF	0.9398	0.8932	0.1825	193.88	0.3345	23.34	1/982	1/7748
SNV	Breast	MTHFS_M90I_6	HLA-A02:01	FQSNHIDMV	0.9925	0.6021	0.1691	102.43	0.3946	9.4	1/982	1/7748
SNV	Breast	NVL_D323A_8	HLA-C03:04	HAIAGELAL	0.9999	0.9805	0.0139	1.53	0.0097	34.78	1/982	1/7748
SNV	Breast	OTUD3_D226V_3	HLA-B44:03	SEVDLRDEV	0.9214	0.7977	0.2143	98.78	0.2826	6.31	1/982	1/7748
SNV	Breast	PEX19_L94V_10	HLA-B44:03	AEFEKAMKEV	0.98	0.9846	0.232	369.01	0.3851	121.25	1/982	1/7748
SNV	Breast	PIK3CA_K111N_3	HLA-B44:03	EENILNREI	0.9967	0.9161	0.2845	9.44	0.1204	17.91	1/982	2/7748
SNV	Breast	PRKG1_T312N_7	HLA-C03:04	IAAEAVNCL	0.9995	0.9856	0.0816	8.83	0.0745	15.93	1/982	1/7748
SNV	Breast	SGSM2_V934A_5	HLA-A02:01	AVWEAIWAA	0.9693	0.6906	0.1104	4.08	0.0869	17.95	1/982	1/7748
SNV	Breast	TBC1D8B_M233I_8	HLA-B44:03	GENHYFSIF	0.9978	0.9286	0.0872	7.37	0.1064	4.16	1/982	1/7748
SNV	Breast	TICRR_G1336R_1	HLA-B40:01	RELDQKEPQM	0.9977	0.6375	0.1244	38.88	0.3635	3.67	1/982	1/7748
SNV	Breast	ZBED4_A638V_6	HLA-B44:03	TELSGVSSF	0.9987	0.9755	0.0214	1.44	0.0206	15.65	1/982	1/7748
SNV	Breast	ZHX2_Q289P_6	HLA-C03:04	FPYPTPAEL	0.9996	0.9939	0.0734	2.01	0.0171	63.38	1/982	1/7748
SNV	Breast	ZHX3_I716V_8	HLA-B44:03	LEMPSSHVL	0.9616	0.9861	0.1534	33.26	0.1903	12.3	1/982	1/7748
SNV	Breast	CCDC43_G62R_4	HLA-A32:01	ALQRILSAF	0.9553	0.9618	0.1774	334.8	0.2452	30.37	1/982	1/7748
SNV	Breast	CCDC43_G62R_5	HLA-B08:01	DALQRILSA	0.9983	0.6063	0.3335	286.61	0.2674	30.37	1/982	1/7748
SNV	Breast	CASP4_K12N_7	HLA-C07:02	HRKKPLNVL	0.9192	0.9588	0.1285	65.43	0.1564	9.39	1/982	1/7748
SNV	Breast	CNTRL_E2010K_9	HLA-A30:01	RVRTLQEEK	0.999	0.8998	0.0149	27.07	0.0148	6.17	1/982	1/7748
SNV	Breast	MPHOSPH8_A658V_5	HLA-B13:02	LEAGVFVNV	0.9945	0.8456	0.054	67.89	0.035	27.04	1/982	1/7748
SNV	Breast	NEK8_R226W_1	HLA-C07:02	WYSPELRQL	0.7706	0.9417	0.072	37.24	0.1114	4.92	1/982	1/7748
SNV	Breast	VCPIP1_C207W_3	HLA-B13:02	QEWLIPVHV	0.9966	0.816	0.0123	34.63	0.0174	57.82	1/982	1/7748
SNV	Breast	FPR3_R54Q_4	HLA-C12:03	AGFQMTRTV	0.8293	0.9837	1.3041	117.59	0.5655	67.61	1/982	1/7748
SNV	Breast	POLA1_T987M_9	HLA-A30:01	KGREILMHM	0.9605	0.6561	0.1429	189.77	0.0857	13.66	1/982	1/7748
SNV	Breast	POLA1_T987M_9	HLA-C12:03	KGREILMHM	0.8946	0.9575	0.9184	219.22	0.7678	13.66	1/982	1/7748
SNV	Breast	POLA1_T987M_2	HLA-C12:03	HMKEMVQKM	0.9971	0.9818	0.2148	149.25	0.6346	13.66	1/982	1/7748
SNV	Breast	RNASEL_F364L_2	HLA-C12:03	FLIDEKYKI	0.9854	0.9841	1.4168	356.32	0.9409	22.07	1/982	1/7748
SNV	Breast	TNFRSF11B_A348T_8	HLA-C12:03	TLKGLMHTL	0.9863	0.9871	0.7544	331.92	0.9142	34.39	1/982	1/7748
SNV	Breast	ANO10_A522S_1	HLA-A02:01	SVLNNFTEV	0.9915	0.8581	0.5156	22.36	0.2268	30.78	1/982	1/7748
SNV	Breast	ANO10_A522S_4	HLA-B15:01	AAFSVLNNF	0.9904	0.9391	0.1024	42.79	0.201	30.78	1/982	1/7748
SNV	Breast	ANO10_A522S_4	HLA-C03:04	AAFSVLNNF	0.9956	0.9929	0.3025	137.1	0.3096	30.78	1/982	1/7748
SNV	Breast	ANO10_A522S_1	HLA-C03:04	SVLNNFTEV	0.8745	0.9969	0.8848	255.15	0.3947	30.78	1/982	1/7748
SNV	Breast	ANO10_A522S_1	HLA-C02:02	SVLNNFTEV	0.8267	0.9907	0.9925	387.87	0.3987	30.78	1/982	1/7748
SNV	Breast	BNIPL_L329M_8	HLA-A02:01	FLDSLGEMA	0.9874	0.6309	0.4415	19.81	0.2166	39.9	1/982	1/7748
SNV	Breast	BNIPL_L329M_8	HLA-A02:01	FLDSLGEMAQL	0.9986	0.6869	0.613	274.42	0.5582	39.9	1/982	1/7748
SNV	Breast	BNIPL_L329M_10	HLA-B27:05	IRFLDSLGEM	1	0.8981	0.4321	19.81	0.2471	39.9	1/982	1/7748
SNV	Breast	EGF_N220I_2	HLA-B15:01	YIREGSNSL	0.993	0.8372	0.4444	159.07	0.3414	13.84	1/982	1/7748
SNV	Breast	EGF_N220I_9	HLA-B27:05	KRLFWIQYI	0.9998	0.8992	0.2929	3.78	0.1193	13.84	1/982	1/7748
SNV	Breast	EGF_N220I_9	HLA-B27:05	KRLFWIQYIR	0.9999	0.9402	0.7774	164.3	0.4627	13.84	1/982	1/7748
SNV	Breast	EGF_N220I_2	HLA-C03:04	YIREGSNSL	0.9967	0.9835	0.1404	4.7	0.0469	13.84	1/982	1/7748
SNV	Breast	EGF_N220I_2	HLA-C02:02	YIREGSNSL	0.8064	0.9467	0.2789	34.07	0.0762	13.84	1/982	1/7748
SNV	Breast	EN1_A369V_8	HLA-C03:04	TGIKNGLVL	0.9967	0.9818	0.7013	144.69	0.317	3.52	1/982	1/7748
SNV	Breast	LRRK2_S1445F_6	HLA-B27:05	ARASSFPVI	0.9996	0.9281	0.501	116.91	0.4249	3.57	1/982	1/7748
SNV	Breast	LRRK2_S1445F_6	HLA-B27:05	ARASSFPVIL	0.9998	0.9131	0.2193	24.95	0.2667	3.57	1/982	1/7748
SNV	Breast	LRRK2_S1445F_5	HLA-C03:04	RASSFPVIL	0.9985	0.9931	0.061	3.74	0.0377	3.57	1/982	1/7748
SNV	Breast	LRRK2_S1445F_5	HLA-C02:02	RASSFPVIL	0.9782	0.9861	0.0815	109.88	0.1707	3.57	1/982	1/7748
SNV	Breast	MS4A14_S527F_3	HLA-C03:04	WQFPKQKSL	0.984	0.9862	0.86	360.89	0.4499	1.81	1/982	1/7748
SNV	Breast	PGBD1_E499K_1	HLA-B15:01	KLIFSNLHF	0.9974	0.9106	0.0189	17.31	0.1305	5.04	1/982	1/7748
SNV	Breast	PGBD1_E499K_6	HLA-B27:05	RRDRFKLIF	0.9987	0.8546	0.368	6.73	0.1633	5.04	1/982	1/7748
SNV	Breast	ROR2_G823A_8	HLA-B15:01	QLYVPVNAY	0.9996	0.8792	0.0549	3.06	0.0282	20.97	1/982	1/7748
SNV	Breast	ROR2_G823A_2	HLA-B15:01	NAYQPVPAY	0.9976	0.874	0.1529	7.94	0.0765	20.97	1/982	1/7748
SNV	Breast	ROR2_G823A_2	HLA-C03:04	NAYQPVPAY	0.9335	0.9881	0.7364	372.45	0.455	20.97	1/982	1/7748
SNV	Breast	TMEM200A_D266Y_11	HLA-B15:01	GLYPPPSKTTY	1	0.9403	0.2138	23.57	0.1531	8.21	1/982	1/7748
SNV	Breast	ATXN7_C639S_7	HLA-C12:03	GAMDPVSSM	0.9982	0.9827	0.0134	1.73	0.0077	11.07	1/982	1/7748
SNV	Breast	FLNB_M270V_2	HLA-A25:01	NVVKQPAKF	0.9918	0.7089	0.017	465.54	0.0679	240.37	1/982	1/7748
SNV	Breast	KAT2B_R536Q_6	HLA-B18:01	KEYITQLVF	0.9879	0.9307	0.0395	17.17	0.0778	6.27	1/982	1/7748
SNV	Breast	KAT2B_R536Q_8	HLA-C12:03	MPKEYITQL	0.5378	0.9855	0.7927	119.04	0.5688	6.27	1/982	1/7748
SNV	Breast	KDM4C_V49L_2	HLA-B57:01	KLIPPKEW	0.9995	0.9937	0.567	213.25	0.375	3.37	1/982	1/7748
SNV	Breast	KDM4C_V49L_4	HLA-B57:01	LAKLIPPKEW	0.9999	0.9948	0.1263	36.52	0.2077	3.37	1/982	1/7748
SNV	Breast	NFE2L2_A124G_3	HLA-A02:01	LLGQTFPFV	0.9972	0.6105	0.0225	17.95	0.2082	59.64	1/982	1/7748
SNV	Breast	PCDH19_R286C_7	HLA-A02:01	YVNDRTCEL	0.9744	0.7542	0.4015	326.11	0.5862	9.85	1/982	1/7748
SNV	Breast	PCDH19_R286C_7	HLA-C06:02	YVNDRTCEL	0.9882	0.9929	0.3021	343.86	0.1706	9.85	1/982	1/7748
SNV	Breast	PCDH19_R286C_7	HLA-C12:03	YVNDRTCEL	0.9988	0.9802	0.1064	3	0.0278	9.85	1/982	1/7748
SNV	Breast	SNX29_P376A_2	HLA-C12:03	KALEGNTCL	0.9285	0.9812	0.2116	195.54	0.7243	13.06	1/982	1/7748
SNV	Breast	TAB3_A462T_1	HLA-C12:03	TTTENLLNL	0.854	0.9668	0.3936	356.93	0.9415	20.96	1/982	1/7748
SNV	Breast	TBX3_H187Y_3	HLA-A02:01	YIYPDSPAT	0.9153	0.5545	0.6625	109.13	0.4037	163.6	1/982	1/7748
SNV	Breast	USP24_L1413F_9	HLA-C12:03	LIAGEALSF	0.9872	0.9896	0.5679	303.62	0.8824	25.97	1/982	1/7748
SNV	Breast	USP24_L1413F_8	HLA-C12:03	IAGEALSFL	0.8823	0.9908	0.2004	166.49	0.6693	25.97	1/982	1/7748
SNV	Breast	EPC2_R145K_5	HLA-A02:01	IMIDKLEKA	0.9983	0.7369	0.1895	2.27	0.0513	27.25	1/982	1/7748
SNV	Breast	FBXL14_S118F_1	HLA-A02:01	FLRALNLSL	0.9454	0.711	0.2276	110.97	0.4065	14.02	1/982	1/7748
SNV	Breast	FBXL14_S118F_5	HLA-B18:01	QEIGFLRAL	0.9788	0.8449	0.0341	6.76	0.0461	14.02	1/982	1/7748
SNV	Breast	FBXL14_S118F_9	HLA-C12:03	HAFVQEIGF	0.6362	0.9893	0.2956	38.29	0.3219	14.02	1/982	1/7748
SNV	Breast	FBXL14_S118F_3	HLA-C12:03	IGFLRALNL	0.9713	0.9792	1.3825	145.43	0.6264	14.02	1/982	1/7748
SNV	Breast	FBXL14_S118F_1	HLA-C12:03	FLRALNLSL	0.9936	0.9939	0.3701	78.83	0.4638	14.02	1/982	1/7748
SNV	Breast	IKBKAP_L442V_2	HLA-C05:01	VVDASNQISV	0.9999	0.9673	0.1651	286.84	0.3332	46.87	1/982	1/7748
SNV	Breast	IKBKAP_L442V_3	HLA-C12:03	AVVDASNQI	0.8463	0.9565	0.4284	44.82	0.3492	46.87	1/982	1/7748
SNV	Breast	MAST1_A84V_2	HLA-C05:01	RVDGRRWSL	0.9997	0.9783	0.0841	16.98	0.1156	1.01	1/982	1/7748
SNV	Breast	MAST1_A84V_9	HLA-C12:03	FSFASSRRV	0.978	0.9653	0.1896	15.76	0.1807	1.01	1/982	1/7748
SNV	Breast	MAST1_A84V_2	HLA-C12:03	RVDGRRWSL	0.6685	0.9875	1.4264	56.75	0.3903	1.01	1/982	1/7748
SNV	Breast	LMBRD1_L63R_1	HLA-A02:01	RLPVDIFLV	0.9911	0.5726	0.0464	3.78	0.0785	134.87	1/982	1/7748
SNV	Breast	LMBRD1_L63R_2	HLA-C07:01	ARLPVDIFL	0.9957	0.7294	0.0498	43.78	0.0607	134.87	1/982	1/7748
SNV	Breast	LMBRD1_L63R_8	HLA-C15:02	IALITSARL	0.9969	0.8432	0.8712	212.03	0.5346	134.87	1/982	1/7748
SNV	Breast	NCOA6_T1790A_2	HLA-C15:02	SATMVSPLL	0.9991	0.7726	0.3296	98.48	0.3913	33.34	1/982	1/7748
SNV	Breast	NLRP3_A77V_9	HLA-A02:01	AMAVWIFAV	0.9922	0.6354	0.0036	10.74	0.1644	6.72	1/982	1/7748
SNV	Breast	PLK2_G526R_8	HLA-A02:01	QLSDHTVRV	0.9953	0.7045	0.0931	2.5	0.0555	192.87	1/982	1/7748
SNV	Breast	PLK2_G526R_9	HLA-A02:01	YQLSDHTVRV	0.9903	0.688	0.7489	2.75	0.0594	192.87	1/982	1/7748
SNV	Breast	PLK2_G526R_8	HLA-C15:02	QLSDHTVRV	0.8554	0.9046	1.0499	210.05	0.5325	192.87	1/982	1/7748
SNV	Breast	PLK2_G526R_7	HLA-C15:02	LSDHTVRVL	0.9966	0.7995	0.046	76.28	0.3448	192.87	1/982	1/7748
SNV	Breast	RIF1_L965M_2	HLA-A02:01	LMLPGLETV	0.9982	0.6544	0.0169	1.78	0.0385	21.67	1/982	1/7748
SNV	Breast	RIF1_L965M_3	HLA-A02:01	LLMLPGLETV	0.9979	0.5627	0.1691	6.4	0.1223	21.67	1/982	1/7748
SNV	Breast	RIF1_L965M_4	HLA-A02:01	FLLMLPGLETV	0.9989	0.5032	1.0286	8.84	0.1488	21.67	1/982	1/7748
SNV	Breast	SGSH_S309I_3	HLA-A32:01	QVIEAYVSL	0.9235	0.8869	0.7309	146.76	0.1764	19.99	1/982	1/7748
SNV	Breast	SGSH_S309I_3	HLA-C15:02	QVIEAYVSL	0.9991	0.8899	0.5561	56.96	0.293	19.99	1/982	1/7748
SNV	Breast	TPP2_L906F_5	HLA-A02:01	RLKDFPFIV	0.9906	0.6303	0.0653	4.77	0.1008	35.09	1/982	1/7748
SNV	Breast	TPP2_L906F_5	HLA-A32:01	RLKDFPFIV	0.879	0.966	0.2195	139.52	0.1718	35.09	1/982	1/7748
SNV	Breast	TPP2_L906F_5	HLA-C15:02	RLKDFPFIV	0.9719	0.8765	1.9656	144.21	0.4591	35.09	1/982	1/7748
SNV	Breast	AHNAK2_P2935S_3	HLA-B35:03	TASDVEVSL	0.9905	0.961	0.1593	46.13	0.0745	7	1/982	1/7748
SNV	Breast	AHNAK2_P2935S_3	HLA-C12:03	TASDVEVSL	0.9957	0.9648	0.105	41.73	0.3368	7	1/982	1/7748
SNV	Breast	CHN2_T188A_7	HLA-C12:03	VTHEEHAAV	0.8269	0.9863	0.1121	56.44	0.3894	1.3	1/982	1/7748
SNV	Breast	CHN2_T188A_1	HLA-C12:03	AAVEKISSL	0.9999	0.9736	0.0071	2.05	0.0104	1.3	1/982	1/7748
SNV	Breast	DALRD3_K304Q_5	HLA-A03:01	KLVDQAPLR	0.9836	0.5755	0.1845	107.78	0.288	60.07	1/982	1/7748
SNV	Breast	DENND4B_L133M_9	HLA-B35:03	TPYSHSANM	0.9803	0.9178	0.0648	7.18	0.0287	20.16	1/982	1/7748
SNV	Breast	F8_Y1802D_3	HLA-B35:03	RPDSFYSSL	0.954	0.7518	0.1115	42.22	0.0715	4.83	1/982	1/7748
SNV	Breast	F8_Y1802D_4	HLA-C07:02	SRPDSFYSSL	0.9943	0.8453	0.106	406.28	0.3668	4.83	1/982	1/7748
SNV	Breast	GRIN2C_T747P_2	HLA-B35:03	VPIGSGKVF	0.969	0.7597	0.0612	60.88	0.0838	1.03	1/982	1/7748
SNV	Breast	LRRC37B_L451F_7	HLA-B35:03	QPPDPGFAI	0.7349	0.989	0.0798	56.28	0.0811	3.19	1/982	1/7748
SNV	Breast	LRRC37B_L451F_7	HLA-B07:02	QPPDPGFAI	0.9365	0.5184	0.1461	67.39	0.2311	3.19	1/982	1/7748
SNV	Breast	MCM7_R532W_9	HLA-B07:02	RPDRDNDLWL	0.8951	0.5436	1.072	43.76	0.1966	92.77	1/982	1/7748
SNV	Breast	MCM7_R532W_1	HLA-C12:03	WLAQHITYV	0.7845	0.9813	1.7745	372.31	0.9575	92.77	1/982	1/7748
SNV	Breast	MYRIP_K130Q_1	HLA-C07:02	QRFGSAKVL	0.9366	0.9638	0.1784	59.29	0.1481	5.02	1/982	1/7748
SNV	Breast	NDUFAF6_C216G_8	HLA-C12:03	KAQGIVTGL	0.9539	0.9812	0.1004	11.67	0.1404	17.97	1/982	1/7748
SNV	Breast	NDUFAF6_T215I_7	HLA-C12:03	KAQGIVICL	0.8876	0.9673	0.2075	175.98	0.6869	17.97	1/982	1/7748
SNV	Breast	P4HA1_C503F_3	HLA-A03:01	AAFPVLVGNK	0.9975	0.6258	0.3554	42.73	0.1946	105.6	1/982	1/7748
SNV	Breast	P4HA1_C503F_6	HLA-C07:02	TRHAAFPVL	0.8139	0.9593	0.0496	28.62	0.0953	105.6	1/982	1/7748
SNV	Breast	PDPR_P159A_3	HLA-C12:03	ISAKKVAEL	0.9991	0.9783	0.0436	18.01	0.1955	18.23	1/982	1/7748
SNV	Breast	PTPN13_R323H_3	HLA-C07:02	YRHCHPEAV	0.7914	0.976	0.0496	137.59	0.228	35.64	1/982	2/7748
SNV	Breast	SEMA3D_Q718K_8	HLA-C07:02	LRYKDYIKI	0.8439	0.8294	0.2811	236.47	0.2896	1.54	1/982	1/7748
SNV	Breast	TFDP2_E297Q_7	HLA-C12:03	ISSDKFQYL	0.9882	0.9322	0.0575	14.48	0.1699	18.19	1/982	1/7748
SNV	Breast	TKT_L182Q_4	HLA-C12:03	VAIQDINRL	0.9655	0.9861	0.2361	13.2	0.1558	60.67	1/982	1/7748
SNV	Breast	TSHZ2_H299L_9	HLA-C12:03	SVHMIKTKL	0.8617	0.9519	0.5869	39.51	0.3273	3.21	1/982	1/7748
SNV	Breast	TUBE1_D311Y_1	HLA-C07:02	YVNIPPRRL	0.818	0.9514	1.8406	227.78	0.2852	2.27	1/982	1/7748
SNV	Breast	TUBE1_D311Y_1	HLA-C12:03	YVNIPPRRL	0.941	0.978	0.3591	5.44	0.0654	2.27	1/982	1/7748
SNV	Breast	ZBTB47_Q48H_5	HLA-C12:03	SLFTHNKQL	0.8492	0.9772	0.2471	219.09	0.7675	15.64	1/982	1/7748
SNV	Breast	AKR1C2_S121F_1	HLA-C03:04	FVKPGEEVI	0.9214	0.9902	0.1638	145.19	0.3174	1.11	1/982	1/7748
SNV	Breast	ATP2A1_R290S_3	HLA-C07:02	WFSGAIYYF	0.5353	0.9188	0.9846	370.91	0.3534	1.95	1/982	1/7748
SNV	Breast	PBRM1_F527L_7	HLA-C07:02	QRMKILLNV	0.973	0.9561	0.2811	291.71	0.3179	51.59	1/982	1/7748
SNV	Breast	SHROOM2_K67R_1	HLA-A02:01	RLLAGDEIV	0.9734	0.6668	0.4654	29.8	0.2513	24.36	1/982	1/7748
SNV	Breast	SHROOM2_K67R_1	HLA-A02:01	RLLAGDEIVGI	0.9978	0.54	0.6596	13.97	0.1865	24.36	1/982	1/7748
SNV	Breast	SHROOM2_K67R_7	HLA-C03:04	KAAAVDRLL	0.9933	0.9818	0.3088	135.35	0.3078	24.36	1/982	1/7748
SNV	Breast	GRIPAP1_M438I_7	HLA-A02:01	MLDELAIET	0.9928	0.6231	0.6895	46.16	0.294	30.64	1/982	1/7748
SNV	Breast	GRIPAP1_M438I_7	HLA-A02:01	MLDELAIETL	0.9962	0.6004	0.5845	7.09	0.1303	30.64	1/982	1/7748
SNV	Breast	GRIPAP1_M438I_8	HLA-A02:01	AMLDELAIETL	0.9994	0.5651	0.6539	73.21	0.3514	30.64	1/982	1/7748
SNV	Breast	GSKIP_L99I_1	HLA-B13:02	IQTPYHETV	0.9081	0.7583	0.1314	369.57	0.1262	24.59	1/982	1/7748
SNV	Breast	MAP3K1_R790M_9	HLA-B13:02	SQAEPVEIM	0.9322	0.8138	0.1085	476.79	0.152	185.69	1/982	1/7748
SNV	Breast	MAP3K1_R790M_2	HLA-C07:02	IMYKKLLSL	0.7693	0.8405	0.3459	81.9	0.1748	185.69	1/982	1/7748
SNV	Breast	MME_I358V_8	HLA-A02:01	YLTKLKPVL	0.9572	0.6408	0.5258	62.74	0.3316	11.88	1/982	1/7748
SNV	Breast	MMP9_R51C_4	HLA-A02:01	YLYCYGYTRV	0.9965	0.5002	0.488	172.99	0.4825	41.98	1/982	1/7748
SNV	Breast	PRRC2C_G2439R_1	HLA-B13:02	RQHQAQLSL	0.7706	0.655	0.0413	444.4	0.1444	126.36	1/982	1/7748
SNV	Breast	TBC1D32_E849K_2	HLA-C07:02	YKQSHIFGL	0.9509	0.9442	0.2737	276.6	0.3101	5.1	1/982	1/7748
SNV	Breast	C5orf49_R63H_2	HLA-B38:01	RHLDYDQKL	0.9919	0.9514	0.0493	50.18	0.0455	1.25	1/982	1/7748
SNV	Breast	CRNKL1_K21N_4	HLA-C12:03	AVDNNTSRL	0.5142	0.9715	1.5914	383.48	0.9686	58.26	1/982	1/7748
SNV	Breast	SP4_Q572K_1	HLA-C12:03	KATIAPVTV	0.8377	0.9884	0.222	46.92	0.3572	7.34	1/982	1/7748
SNV	Breast	TSHZ3_P767L_6	HLA-A03:01	AVATPLPLQSK	0.9995	0.5022	0.4936	113.47	0.2926	1.4	1/982	1/7748
SNV	Breast	TSHZ3_P767L_7	HLA-C12:03	AAVATPLPL	0.9938	0.9894	0.0291	24.33	0.2391	1.4	1/982	1/7748
SNV	Breast	CUL4A_K435N_4	HLA-C04:01	TLDNIMILF	0.9987	0.5481	0.1614	68.44	0.0633	44.64	1/982	1/7748
SNV	Breast	DLC1_G293D_4	HLA-B44:03	AENDLEKSGF	0.9995	0.9247	0.0694	1.29	0.0103	8.51	1/982	1/7748
SNV	Breast	PPRC1_L73Q_6	HLA-A03:01	RLGPSQRDK	0.9944	0.5077	0.418	47.97	0.2061	53	1/982	1/7748
SNV	Breast	C3_E484D_4	HLA-B15:01	RAHDAKIRY	0.9972	0.8748	0.2913	8.65	0.0834	138.8	1/982	1/7748
SNV	Breast	C3_E484D_4	HLA-B15:01	RAHDAKIRYY	0.9987	0.7881	0.6134	42.18	0.1996	138.8	1/982	1/7748
SNV	Breast	ELP4_K283N_4	HLA-A02:01	SLTNFLYVL	0.9824	0.5061	0.1186	41.29	0.2831	23.09	1/982	2/7748
SNV	Breast	SETD7_T75S_8	HLA-B15:01	LQGQGVYSY	0.9989	0.8645	0.0665	2.96	0.0267	40.1	1/982	1/7748
SNV	Breast	SETD7_T75S_9	HLA-B15:01	ALQGQGVYSY	0.9995	0.9082	0.3244	7.83	0.0752	40.1	1/982	1/7748
SNV	Breast	SETD7_T75S_2	HLA-C03:03	YSYEDGGVL	0.9991	0.9805	0.0271	1.39	0.0075	40.1	1/982	1/7748
SNV	Breast	ARHGAP6_F318V_5	HLA-A31:01	SLLPVGNKR	0.951	0.6441	0.1465	27.46	0.0993	1.14	1/982	1/7748
SNV	Breast	ARHGAP6_F318V_6	HLA-A31:01	ASLLPVGNKR	0.9597	0.6434	0.5379	225.39	0.3095	1.14	1/982	1/7748
SNV	Breast	CAD_C252F_1	HLA-A02:01	FLGHQLLAL	0.9938	0.5913	0.0238	5.28	0.1082	36.05	1/982	1/7748
SNV	Breast	CAD_C252F_4	HLA-C12:02	FGIFLGHQL	0.8841	0.9828	0.5015	499.54	0.4694	36.05	1/982	1/7748
SNV	Breast	DDX6_E318K_2	HLA-B08:01	TKRQKVHCL	0.92	0.6734	0.184	25.69	0.0745	88.18	1/982	1/7748
SNV	Breast	KCNQ1_M480I_5	HLA-B08:01	MPHFIRTNSF	0.9938	0.5494	0.6072	393.27	0.3015	17.64	1/982	1/7748
SNV	Breast	LRIG1_T717M_3	HLA-A31:01	KAMGNPPPR	0.9958	0.7658	0.0495	22.39	0.0919	92.22	1/982	1/7748
SNV	Breast	LRIG1_T717M_2	HLA-A02:01	AMGNPPPRI	0.9516	0.7954	0.8011	347.93	0.5967	92.22	1/982	1/7748
SNV	Breast	MAPT_E539Q_3	HLA-C07:01	TRQPKKVAV	0.9194	0.727	0.1809	212.4	0.1181	1.42	1/982	1/7748
SNV	Breast	NEDD4L_I842L_2	HLA-A02:01	KLFDENELEL	0.9984	0.7146	0.496	2.09	0.0475	2.39	1/982	1/7748
SNV	Breast	NEDD4L_I842L_2	HLA-A02:01	KLFDENELELL	0.9997	0.6729	0.555	17.58	0.2065	2.39	1/982	1/7748
SNV	Breast	PARD3_D581N_6	HLA-A31:01	IVLTPNGTR	0.8573	0.7874	0.2502	146.15	0.2598	24.98	1/982	1/7748
SNV	Breast	PIR_T196M_2	HLA-C12:02	YMISGDVYI	0.8415	0.9452	0.9387	56.74	0.1191	79.11	1/982	1/7748
SNV	Breast	TPD52L2_S84F_9	HLA-B08:01	ELKRRLGLF	0.9559	0.5659	0.1881	364.17	0.293	69.46	1/982	1/7748
SNV	Breast	TPD52L2_S84F_7	HLA-C07:01	KRRLGLFTL	0.997	0.6707	0.0177	315.96	0.1415	69.46	1/982	1/7748
SNV	Breast	USP7_D186N_4	HLA-C12:02	FIDNDKVTF	0.9875	0.9534	0.2439	82.9	0.1605	97.33	1/982	1/7748
SNV	Breast	AADAT_M109V_10	HLA-B39:06	IHYPPSQGQV	0.9957	0.9294	0.2506	431.2	0.3448	16.46	1/982	1/7748
SNV	Breast	AAK1_Y225C_1	HLA-B39:06	CRAPEMVNL	0.9986	0.6911	1.124	287.45	0.2927	8.56	1/982	1/7748
SNV	Breast	ABHD13_L65F_8	HLA-C07:02	YKFQDVLFY	0.8838	0.9446	0.8174	262.74	0.3025	14.9	1/982	1/7748
SNV	Breast	ABHD13_L65F_7	HLA-C07:02	KFQDVLFYF	0.7869	0.9564	0.2575	83.28	0.1764	14.9	1/982	1/7748
SNV	Breast	ABHD2_N161S_1	HLA-B39:06	SHLGALPNI	0.9986	0.9476	0.0543	10.23	0.064	52.21	1/982	1/7748
SNV	Breast	ABHD2_N161S_1	HLA-B39:06	SHLGALPNIEL	0.9997	0.8228	0.2609	35.83	0.1217	52.21	1/982	1/7748
SNV	Breast	ABHD2_N161S_7	HLA-C07:02	YRCAVLSHL	0.8901	0.9301	0.0085	247.64	0.295	52.21	1/982	1/7748
SNV	Breast	ACE_R857C_6	HLA-B39:06	LHAYVCRAL	0.9832	0.5722	0.1739	175.11	0.2434	5.95	1/982	1/7748
SNV	Breast	ACHE_Y108C_7	HLA-A24:02	QYVDTLCPGF	0.9954	0.9089	0.0568	8.43	0.2022	3.31	1/982	1/7748
SNV	Breast	ACOX1_N244S_1	HLA-B39:06	SHRIPRENML	0.9745	0.6756	1.7686	243	0.2759	37.14	1/982	1/7748
SNV	Breast	ACTN1_M845T_2	HLA-C08:02	TTDELRREL	0.9999	0.9579	0.0101	199.47	0.0981	153.13	1/982	1/7748
SNV	Breast	AGFG2_P326H_2	HLA-B39:06	VHAAGVPSSL	0.9958	0.8798	0.1573	9.68	0.0624	16.81	1/982	1/7748
SNV	Breast	AGFG2_P326H_1	HLA-C08:02	HAAGVPSSL	0.991	0.9899	0.1467	288.97	0.1123	16.81	1/982	1/7748
SNV	Breast	AGO2_Y311H_2	HLA-B14:02	QHFKDRHKL	0.9826	0.5521	0.0101	393.98	0.0765	46.4	1/982	1/7748
SNV	Breast	AGO2_Y311H_2	HLA-B39:06	QHFKDRHKL	0.9902	0.5848	0.0493	4.47	0.0372	46.4	1/982	1/7748
SNV	Breast	AGO2_Y311H_2	HLA-B39:06	QHFKDRHKLVL	0.9875	0.8112	0.7189	436.73	0.3465	46.4	1/982	1/7748
SNV	Breast	ALDH3A2_G412R_2	HLA-C07:02	HRKHSFDTF	0.7876	0.9489	0.0447	134.62	0.2256	30.32	1/982	1/7748
SNV	Breast	AOX1_A1022D_3	HLA-B39:06	SRDAGQAAA	0.9885	0.9445	0.2061	164.64	0.2376	26.31	1/982	1/7748
SNV	Breast	AOX1_A1022D_3	HLA-B39:06	SRDAGQAAAL	0.9972	0.9611	0.5654	155.33	0.2321	26.31	1/982	1/7748
SNV	Breast	ATP7A_R1423Q_7	HLA-A24:02	SYELPAQSQI	0.9549	0.731	1.7379	63.92	0.3924	9.71	1/982	1/7748
SNV	Breast	BEX2_N10H_6	HLA-B39:06	ERALHNLIV	0.9975	0.6229	0.1304	90.01	0.1856	132.4	1/982	1/7748
SNV	Breast	BEX2_N10H_3	HLA-B39:06	LHNLIVENV	0.9992	0.7718	0.0926	59.27	0.1568	132.4	1/982	1/7748
SNV	Breast	BIRC6_I235L_11	HLA-B39:06	HHVLKSIASAL	0.9998	0.6556	0.1573	158.01	0.2338	22.33	1/982	1/7748
SNV	Breast	BRWD3_K1392E_3	HLA-C07:02	FYEDVRQIF	0.971	0.8768	0.0447	10.84	0.0524	8.63	1/982	1/7748
SNV	Breast	CCDC112_P137H_2	HLA-B39:06	VHVDKVTPSTL	0.9989	0.8091	0.3469	82.5	0.1796	14.92	1/982	1/7748
SNV	Breast	CEP44_E188Q_6	HLA-C08:02	NVDISQDTL	0.9997	0.9549	0.0535	136.54	0.0753	7.22	1/982	1/7748
SNV	Breast	CEP72_Q31R_8	HLA-B39:06	HRDLAELRSL	0.9957	0.8929	1.0758	213.33	0.2628	15.23	1/982	1/7748
SNV	Breast	CEP95_Y670C_2	HLA-C08:02	YCDDYRVQL	0.9999	0.8743	0.0127	81.58	0.0607	19.02	1/982	1/7748
SNV	Breast	CHD7_K2517E_4	HLA-C07:02	GRRENVEGL	0.7194	0.9478	0.4095	454.2	0.3832	16.21	1/982	1/7748
SNV	Breast	CLCN3_T766A_3	HLA-B39:06	DHAPMEIVV	0.9893	0.8077	0.0478	2.33	0.0169	37.69	1/982	1/7748
SNV	Breast	CLCN3_T766A_5	HLA-C08:02	VTDHAPMEI	0.9999	0.9708	0.005	16.72	0.0274	37.69	1/982	1/7748
SNV	Breast	COX15_L158I_7	HLA-B14:02	HRMWGRIVGL	0.9962	0.6805	0.21	78.62	0.0249	47.75	1/982	1/7748
SNV	Breast	COX15_L158I_7	HLA-B39:06	HRMWGRIVGL	0.9982	0.6946	0.4903	35.18	0.1208	47.75	1/982	1/7748
SNV	Breast	COX15_L158I_6	HLA-C07:02	RMWGRIVGL	0.9723	0.9398	0.2402	117.34	0.2108	47.75	1/982	1/7748
SNV	Breast	COX15_L158I_3	HLA-C07:02	GRIVGLVYI	0.8987	0.8407	0.4666	274.41	0.3089	47.75	1/982	1/7748
SNV	Breast	COX15_L158I_7	HLA-C07:02	HRMWGRIVGL	0.9988	0.9365	0.2575	258.14	0.2999	47.75	1/982	1/7748
SNV	Breast	CRYL1_Y232H_3	HLA-B39:06	MRHAFIGPL	0.9966	0.7178	0.0493	184.07	0.2482	8.57	1/982	1/7748
SNV	Breast	CSF2RA_R390H_3	HLA-A24:02	GYHEEVLTV	0.9782	0.5411	0.3051	25.31	0.2946	6.72	1/982	1/7748
SNV	Breast	CSF2RA_R390H_2	HLA-B39:06	YHEEVLTV	0.9998	0.9534	0.3321	45.18	0.1369	6.72	1/982	1/7748
SNV	Breast	CSNK1E_D265E_8	HLA-C07:02	LRFDDKPEY	0.952	0.9115	0.0638	41.37	0.1183	55.26	1/982	1/7748
SNV	Breast	CSTF3_R551H_6	HLA-B39:06	YKDVSHAKL	0.9892	0.6635	1.5124	149.27	0.2284	40.84	1/982	1/7748
SNV	Breast	CSTF3_T472P_5	HLA-B14:02	ERVLPSGSL	0.9971	0.9611	0.0818	82.95	0.0269	40.84	1/982	1/7748
SNV	Breast	CSTF3_T472P_5	HLA-B39:06	ERVLPSGSL	0.995	0.9509	0.3842	90.41	0.186	40.84	1/982	1/7748
SNV	Breast	CUL7_F363L_9	HLA-B14:02	RRFRPRSEL	0.9866	0.8888	0.1823	456.26	0.0825	70.12	1/982	1/7748
SNV	Breast	CUL7_F363L_9	HLA-C07:02	RRFRPRSEL	0.9772	0.9569	0.1184	24.17	0.086	70.12	1/982	1/7748
SNV	Breast	CUL7_F363L_1	HLA-C08:02	LASGNTYAL	0.9817	0.9763	0.2345	258.46	0.1081	70.12	1/982	1/7748
SNV	Breast	DENND6A_Y439S_1	HLA-C07:02	SFLELTQSF	0.7967	0.984	0.0447	11.26	0.0538	34.23	1/982	1/7748
SNV	Breast	DHRS7B_Q186K_3	HLA-B14:02	RRKGHIVAI	0.9339	0.7053	0.0409	252.41	0.0626	4.81	1/982	1/7748
SNV	Breast	DHRS7B_Q186K_3	HLA-C07:02	RRKGHIVAI	0.9335	0.9474	0.0826	19.34	0.0756	4.81	1/982	1/7748
SNV	Breast	DIP2C_V1016A_8	HLA-B14:02	KRAEKIAAM	0.98	0.5699	0.0532	59.71	0.0222	22.76	1/982	1/7748
SNV	Breast	DIP2C_V1016A_8	HLA-B39:06	KRAEKIAAM	0.9927	0.6855	0.6362	471.65	0.3568	22.76	1/982	1/7748
SNV	Breast	DIP2C_V1016A_8	HLA-C07:02	KRAEKIAAM	0.987	0.9378	0.0139	5.15	0.0194	22.76	1/982	1/7748
SNV	Breast	DIP2C_V1016A_7	HLA-C08:02	RAEKIAAML	0.9996	0.9722	0.2592	379.46	0.1225	22.76	1/982	1/7748
SNV	Breast	DNTTIP2_T200A_9	HLA-A33:01	DISFSGIAAR	0.9909	0.5218	0.4218	118.55	0.0737	62.02	1/982	1/7748
SNV	Breast	DOCK8_R1777G_7	HLA-B39:06	THSKLQGAF	0.9541	0.6138	0.5952	440.23	0.3476	12.11	1/982	1/7748
SNV	Breast	DOLPP1_P198H_2	HLA-B39:06	WHVSEFFLI	0.9971	0.9032	0.1364	114.5	0.2034	75.09	1/982	1/7748
SNV	Breast	DSTYK_K781E_7	HLA-B39:06	HRDIKLENVL	0.9921	0.8066	0.8245	80.73	0.178	19.3	1/982	1/7748
SNV	Breast	DYNC1H1_N4532S_7	HLA-A24:02	QYVAQASSW	0.9923	0.6779	0.1288	22.57	0.2847	262.28	1/982	1/7748
SNV	Breast	EAF1_V58A_5	HLA-C08:02	KGDEATITL	0.9999	0.9003	0.0159	17.13	0.0279	70.84	1/982	1/7748
SNV	Breast	EIF3G_R83H_7	HLA-C07:02	KKFKIVHTF	0.834	0.8962	0.052	140.56	0.2303	88.6	1/982	1/7748
SNV	Breast	ELOVL5_V23I_3	HLA-B14:02	TRIKGWFLL	0.9981	0.8204	0.1261	140.32	0.0409	189.34	1/982	1/7748
SNV	Breast	ELOVL5_V23I_3	HLA-B39:06	TRIKGWFLL	0.9987	0.7135	0.3423	9.32	0.0613	189.34	1/982	1/7748
SNV	Breast	ELOVL5_V23I_3	HLA-C07:02	TRIKGWFLL	0.9741	0.9027	0.0826	15.09	0.0657	189.34	1/982	1/7748
SNV	Breast	ENPP5_V64A_6	HLA-B39:06	VHVKQATNV	0.9953	0.7581	0.0771	191.59	0.2521	21.35	1/982	1/7748
SNV	Breast	EPG5_V2534A_3	HLA-A24:02	QYAEYQDQI	0.9889	0.6357	0.1434	8.09	0.1983	8.73	1/982	1/7748
SNV	Breast	EPHB2_G517R_2	HLA-C07:02	YRRYSGKMY	0.7077	0.9162	0.5371	494.03	0.3957	2.63	1/982	1/7748
SNV	Breast	EPHB2_G517R_1	HLA-C07:02	RRYSGKMYF	0.9	0.9059	0.0061	1.79	0.0049	2.63	1/982	1/7748
SNV	Breast	EPHB2_G517R_2	HLA-C07:02	YRRYSGKMYF	0.9962	0.8696	1.0224	6.51	0.0306	2.63	1/982	1/7748
SNV	Breast	F8_H1938R_2	HLA-B14:02	FRAINGYIM	0.9942	0.5354	0.096	262.07	0.0636	5	1/982	1/7748
SNV	Breast	F8_H1938R_2	HLA-B39:06	FRAINGYIM	0.9977	0.6397	0.1885	5.06	0.0408	5	1/982	1/7748
SNV	Breast	F8_H1938R_4	HLA-C07:02	YRFRAINGY	0.8246	0.824	0.0343	7.4	0.0351	5	1/982	1/7748
SNV	Breast	F8_H1938R_2	HLA-C07:02	FRAINGYIM	0.9711	0.8861	0.0899	11.79	0.0556	5	1/982	1/7748
SNV	Breast	FAM13B_I167T_6	HLA-B39:06	SHHEETWSA	0.9986	0.9744	0.0001	14.48	0.0768	41.87	1/982	1/7748
SNV	Breast	FAM13B_I167T_5	HLA-B39:06	HHEETWSANSL	0.9996	0.8443	0.5479	234	0.2721	41.87	1/982	1/7748
SNV	Breast	FARSB_I117K_1	HLA-C07:02	KRPFAVAAV	0.8312	0.9724	0.484	481.64	0.3919	121	1/982	1/7748
SNV	Breast	FAT2_I3536L_11	HLA-A24:02	HYAPSALPLEL	0.9997	0.5258	0.3595	321.1	0.6192	2.49	1/982	1/7748
SNV	Breast	FOXM1_L121I_1	HLA-C07:02	IRPQTQTSY	0.7935	0.8876	0.052	53.17	0.1383	206.59	1/982	1/7748
SNV	Breast	GDPD5_N336S_6	HLA-B39:06	HREAQSQSI	0.9949	0.8094	0.3169	127.4	0.2134	2.53	1/982	1/7748
SNV	Breast	GORASP1_L333P_4	HLA-C08:02	STEPTTTAV	0.9989	0.9906	0.1354	187.45	0.0952	14.81	1/982	1/7748
SNV	Breast	GSAP_L784R_8	HLA-C07:02	SRNHVTRRL	0.8396	0.9769	0.1184	22.18	0.0811	4.57	1/982	1/7748
SNV	Breast	GTPBP3_N150D_4	HLA-C07:02	AFADGKLNL	0.7133	0.9579	0.3186	96.45	0.1907	26.02	1/982	1/7748
SNV	Breast	HCAR3_K28R_8	HLA-B39:06	FRDDFIARV	0.9984	0.7731	0.2506	10.82	0.0656	1.8	1/982	1/7748
SNV	Breast	HCAR3_K28R_8	HLA-B39:06	FRDDFIARVL	0.9979	0.7967	0.4269	8.98	0.0602	1.8	1/982	1/7748
SNV	Breast	HCAR3_K28R_8	HLA-C07:02	FRDDFIARV	0.8141	0.9601	0.2011	29.26	0.0965	1.8	1/982	1/7748
SNV	Breast	HCAR3_K28R_1	HLA-C07:02	RVLPPVLGL	0.9746	0.9769	1.2769	148.08	0.2359	1.8	1/982	1/7748
SNV	Breast	HCAR3_K28R_8	HLA-C07:02	FRDDFIARVL	0.9968	0.9694	0.206	154.76	0.2406	1.8	1/982	1/7748
SNV	Breast	HIVEP2_C2021R_8	HLA-B14:02	DRLDIPSRM	0.9988	0.9257	0.2276	117.32	0.0364	22.29	1/982	1/7748
SNV	Breast	HIVEP2_C2021R_8	HLA-B39:06	DRLDIPSRM	0.994	0.9596	0.4269	76.48	0.1743	22.29	1/982	1/7748
SNV	Breast	HIVEP2_C2021R_2	HLA-B39:06	SRMDEECML	0.9948	0.9215	0.56	43.34	0.1338	22.29	1/982	1/7748
SNV	Breast	HIVEP2_C2021R_8	HLA-C07:02	DRLDIPSRM	0.7993	0.9786	0.7124	177.9	0.2561	22.29	1/982	1/7748
SNV	Breast	HIVEP2_C2021R_2	HLA-C07:02	SRMDEECML	0.9333	0.9804	0.2126	412.32	0.369	22.29	1/982	1/7748
SNV	Breast	HMBOX1_F22V_9	HLA-B39:06	SHYTDEPRV	0.9977	0.8275	0.1459	63.71	0.1618	10.64	1/982	1/7748
SNV	Breast	HMBOX1_F22V_9	HLA-B39:06	SHYTDEPRVTI	0.9999	0.7582	0.2024	159.09	0.2344	10.64	1/982	1/7748
SNV	Breast	HMBOX1_F22V_7	HLA-C08:02	YTDEPRVTI	0.9999	0.9571	0.0005	1.59	0.0029	10.64	1/982	1/7748
SNV	Breast	IDH3A_M88T_2	HLA-C08:02	STDKNKMGL	0.9997	0.9487	0.0325	368.47	0.1214	15.42	1/982	1/7748
SNV	Breast	INTS8_Y931H_2	HLA-B39:06	DHIWDVTIL	0.9536	0.5789	0.1051	1.98	0.0109	36.97	1/982	1/7748
SNV	Breast	ITGB8_V192A_2	HLA-C08:02	YADKTVSPY	0.9422	0.9157	0.2174	445.07	0.1323	53.61	1/982	1/7748
SNV	Breast	KAT2A_R799Q_7	HLA-C08:02	FVADLQQVI	0.9913	0.9841	0.5351	156.48	0.0838	44.47	1/982	1/7748
SNV	Breast	KCNQ4_E237G_5	HLA-B39:06	AHSKGLITA	0.9984	0.9382	0.0027	142.92	0.2243	1.56	1/982	1/7748
SNV	Breast	KIF13A_F1021L_6	HLA-A33:01	NTGGILQLR	0.9165	0.5687	0.0917	118.24	0.0735	25.74	1/982	1/7748
SNV	Breast	KIFC3_R633H_2	HLA-B39:06	NHTTEFTNL	0.9982	0.7494	0.1333	4.23	0.0357	6.41	1/982	1/7748
SNV	Breast	KPNA2_N375S_1	HLA-B39:06	SHGLVPFLV	0.9983	0.9687	0.0869	32.1	0.1167	627.24	1/982	1/7748
SNV	Breast	LRRK1_L139F_9	HLA-B39:06	GHTAVVQEF	0.9688	0.7367	1.3005	218.05	0.265	2.83	1/982	1/7748
SNV	Breast	LY75_Y804H_2	HLA-B39:06	WHNPDRAGI	0.9955	0.9451	0.2218	7.23	0.054	10.34	1/982	1/7748
SNV	Breast	MAN2B1_A381T_3	HLA-A24:02	PYTDGPHQF	0.9988	0.608	0.1288	1.92	0.0515	100.89	1/982	2/7748
SNV	Breast	MAN2B1_A381T_4	HLA-A24:02	FPYTDGPHQF	0.9821	0.5871	1.6412	1.79	0.0444	100.89	1/982	2/7748
SNV	Breast	MAN2B1_A381T_3	HLA-A24:02	PYTDGPHQFW	0.9985	0.7229	0.4577	79.43	0.4205	100.89	1/982	2/7748
SNV	Breast	MAN2B1_A381T_5	HLA-A24:02	FFPYTDGPHQF	0.9999	0.5252	0.2868	3.73	0.1168	100.89	1/982	2/7748
SNV	Breast	MAN2B1_A381T_4	HLA-C07:02	FPYTDGPHQF	0.9952	0.9554	1.412	199.8	0.2698	100.89	1/982	1/7748
SNV	Breast	MAP2K1_S86A_1	HLA-B39:06	AHKPSGLVM	0.9924	0.9073	0.3842	74.82	0.1728	127.56	1/982	1/7748
SNV	Breast	MFN2_G548R_6	HLA-B14:02	FHFSLRWTM	0.9739	0.8498	0.0041	186.67	0.0528	80.02	1/982	1/7748
SNV	Breast	MFN2_G548R_6	HLA-B39:06	FHFSLRWTM	0.9938	0.9146	0.0036	2.82	0.0221	80.02	1/982	1/7748
SNV	Breast	MFN2_G548R_6	HLA-B39:06	FHFSLRWTML	0.9978	0.8902	0.3757	141.71	0.2235	80.02	1/982	1/7748
SNV	Breast	MFN2_G548R_6	HLA-C07:02	FHFSLRWTM	0.7583	0.9461	0.0756	155.08	0.2408	80.02	1/982	1/7748
SNV	Breast	MIA3_R752M_1	HLA-B39:06	MQFDVNLQV	0.9742	0.9218	0.0362	49.5	0.1439	27.57	1/982	1/7748
SNV	Breast	MICAL3_F478L_10	HLA-B14:02	TRYPNINVNL	0.9898	0.5817	0.2637	188.38	0.0531	4.5	1/982	1/7748
SNV	Breast	MICAL3_F478L_8	HLA-B39:06	YPNINVNLL	0.9221	0.5545	0.7551	408.3	0.3374	4.5	1/982	1/7748
SNV	Breast	MICAL3_F478L_10	HLA-B39:06	TRYPNINVNL	0.997	0.707	0.7061	9.58	0.0621	4.5	1/982	1/7748
SNV	Breast	MICAL3_F478L_10	HLA-B39:06	TRYPNINVNLL	0.9987	0.652	1.9381	119.05	0.207	4.5	1/982	1/7748
SNV	Breast	MICAL3_F478L_9	HLA-C07:02	RYPNINVNL	0.5849	0.9168	0.1925	18.56	0.0741	4.5	1/982	1/7748
SNV	Breast	MICAL3_F478L_10	HLA-C07:02	TRYPNINVNL	0.9444	0.9486	0.0606	37.64	0.1121	4.5	1/982	1/7748
SNV	Breast	MLH1_A111P_4	HLA-B39:06	SHVPHVTI	0.9998	0.5924	0.0678	65.78	0.1639	50.33	1/982	1/7748
SNV	Breast	MLH1_A111P_4	HLA-B39:06	SHVPHVTIT	0.9962	0.6719	0.0281	53.12	0.1492	50.33	1/982	1/7748
SNV	Breast	MRPL19_S77I_5	HLA-B39:06	RRFLIPEFI	0.9332	0.7394	0.5654	254.65	0.2806	50.29	1/982	1/7748
SNV	Breast	MRPL19_S77I_5	HLA-C07:02	RRFLIPEF	0.9974	0.936	0.2011	213.43	0.2775	50.29	1/982	1/7748
SNV	Breast	MRPL19_S77I_5	HLA-C07:02	RRFLIPEFI	0.9016	0.9316	0.1784	45.41	0.1244	50.29	1/982	1/7748
SNV	Breast	MRPS26_G195W_5	HLA-A33:01	ITREWLVVR	0.9565	0.5702	0.0574	218.1	0.1134	89.66	1/982	1/7748
SNV	Breast	MRPS26_G195W_2	HLA-A33:01	EWLVVRPQR	0.9835	0.6486	0.2066	91.92	0.0655	89.66	1/982	1/7748
SNV	Breast	NID2_H614N_3	HLA-C08:02	FTNDMEVTF	0.9736	0.9791	0.3889	122.32	0.07	6.22	1/982	1/7748
SNV	Breast	NR2F2_L365P_7	HLA-A24:02	RFGKLLPRL	0.9934	0.5249	0.227	130.88	0.4904	28.81	1/982	1/7748
SNV	Breast	NR2F2_L365P_4	HLA-C07:02	KLLPRLPSL	0.8455	0.9868	0.6807	184.14	0.2602	28.81	1/982	1/7748
SNV	Breast	OBSCN_A5776V_1	HLA-C07:02	VAFEQYLEF	0.9632	0.9637	0.2943	118.5	0.2119	8.37	1/982	1/7748
SNV	Breast	PDCD7_I318N_5	HLA-C07:02	RMVDNLRAL	0.911	0.9713	0.2181	139.25	0.2293	53.15	1/982	1/7748
SNV	Breast	PDCD7_I318N_6	HLA-C07:02	KRMVDNLRAL	0.9879	0.9667	0.34	386.79	0.3595	53.15	1/982	1/7748
SNV	Breast	PELP1_V405A_5	HLA-A24:02	LLPQALNSW	0.9829	0.7773	1.0334	200.78	0.5499	46.22	1/982	1/7748
SNV	Breast	PHLDB2_A1045V_1	HLA-B14:02	VHAEKTRLL	0.9163	0.6521	0.0674	464.44	0.0834	11.09	1/982	1/7748
SNV	Breast	PHLDB2_A1045V_1	HLA-B39:06	VHAEKTRLL	0.9852	0.7388	0.2609	22.97	0.1017	11.09	1/982	1/7748
SNV	Breast	PINK1_G150V_6	HLA-B14:02	TRRLQVFRL	0.9919	0.6562	0.2175	432.31	0.0799	5	1/982	1/7748
SNV	Breast	PINK1_G150V_6	HLA-C07:02	TRRLQVFRL	0.8916	0.9585	0.2626	295.73	0.3199	5	1/982	1/7748
SNV	Breast	POLR1E_C338R_2	HLA-B39:06	RRIWFLDTL	0.9885	0.9371	0.5409	77.32	0.175	96.7	1/982	1/7748
SNV	Breast	POLR1E_C338R_2	HLA-C07:02	RRIWFLDTL	0.9654	0.967	0.028	27.17	0.0925	96.7	1/982	1/7748
SNV	Breast	PTGS1_F502I_9	HLA-C08:02	YGDIDALEI	0.9998	0.8797	0.051	76.4	0.0591	13.46	1/982	1/7748
SNV	Breast	PTK2_R550W_7	HLA-B39:06	HRDIAAWNV	0.9948	0.9599	0.3423	22.65	0.1011	57.66	1/982	1/7748
SNV	Breast	PTK2_R550W_7	HLA-B39:06	HRDIAAWNVL	0.9976	0.9374	0.6787	26.09	0.1074	57.66	1/982	1/7748
SNV	Breast	RAB13_Y77H_2	HLA-B39:06	AHYRGAMGI	0.9973	0.9059	0.0914	12.86	0.0711	251.26	1/982	1/7748
SNV	Breast	RABEP2_P134S_5	HLA-B39:06	SRAYSLDSL	0.9973	0.7383	0.4849	30.42	0.1143	8.57	1/982	1/7748
SNV	Breast	RABEP2_P134S_5	HLA-C07:02	SRAYSLDSL	0.8047	0.9453	0.3259	287.31	0.3157	8.57	1/982	1/7748
SNV	Breast	RAD21_N106K_3	HLA-A24:02	AYKAITLPEEF	0.9993	0.6492	0.4724	16.39	0.2573	389.31	1/982	1/7748
SNV	Breast	RAD21_N106K_7	HLA-B39:06	NREAAYKAI	0.9943	0.7072	0.3927	306.93	0.2993	389.31	1/982	1/7748
SNV	Breast	RBM26_N550H_3	HLA-C07:02	KLHEHFSRF	0.9182	0.8892	0.5032	201.4	0.2707	42.06	1/982	1/7748
SNV	Breast	RIF1_S2233R_2	HLA-B14:02	NRSPIGKSV	0.9964	0.6399	0.1496	377.08	0.0748	38.52	1/982	1/7748
SNV	Breast	RIF1_S2233R_2	HLA-B39:06	NRSPIGKSV	0.9988	0.6989	0.1396	37.34	0.1235	38.52	1/982	1/7748
SNV	Breast	RLIM_R266W_4	HLA-B14:02	SRTWHHVTL	0.9967	0.7087	0.009	16.63	0.0089	61.82	1/982	1/7748
SNV	Breast	RLIM_R266W_4	HLA-B39:06	SRTWHHVTL	0.9991	0.8082	0.1239	6.87	0.0525	61.82	1/982	1/7748
SNV	Breast	RLIM_R266W_4	HLA-C07:02	SRTWHHVTL	0.9904	0.94	0.021	9.88	0.0483	61.82	1/982	1/7748
SNV	Breast	RPA4_R172H_1	HLA-B39:06	HRDTTVESV	0.9989	0.6338	0.1485	5.77	0.0463	1.08	1/982	1/7748
SNV	Breast	RPGRIP1L_H502R_2	HLA-B14:02	TRAETVQEL	0.9991	0.8588	0.0656	57.63	0.0219	4.86	1/982	1/7748
SNV	Breast	RPGRIP1L_H502R_2	HLA-B39:06	TRAETVQEL	0.9991	0.8409	0.1545	2.7	0.0201	4.86	1/982	1/7748
SNV	Breast	RPGRIP1L_H502R_2	HLA-C07:02	TRAETVQEL	0.9171	0.9599	0.0414	13.12	0.0596	4.86	1/982	1/7748
SNV	Breast	RYR1_R2965H_8	HLA-A24:02	GFLQQLLHW	0.9896	0.6809	0.2666	98.72	0.4509	9.9	1/982	1/7748
SNV	Breast	RYR1_R2965H_2	HLA-A24:02	LHWMDISQEF	0.9841	0.5136	1.0334	6.18	0.1678	9.9	1/982	1/7748
SNV	Breast	RYR1_R2965H_1	HLA-C07:02	HWMDISQEF	0.8805	0.9669	0.052	11	0.0529	9.9	1/982	1/7748
SNV	Breast	SATB1_Y89C_9	HLA-B39:06	EHYENAIEC	0.9707	0.6594	0.1613	7.15	0.0537	2.01	1/982	1/7748
SNV	Breast	SCARB1_R45C_1	HLA-C08:02	CIDPSSLSF	0.9991	0.9474	0.0308	240.75	0.1055	14.25	1/982	1/7748
SNV	Breast	SCYL1_I367T_6	HLA-B14:02	DRAMRTRLL	0.9958	0.5117	0.0432	14.22	0.0084	75.07	1/982	1/7748
SNV	Breast	SCYL1_I367T_3	HLA-C07:02	MRTRLLQQM	0.989	0.9625	0.0826	291.62	0.3179	75.07	1/982	1/7748
SNV	Breast	SEMA6A_I405V_9	HLA-C08:02	LMDEAVPSV	0.9987	0.9875	0.0249	7.87	0.0168	4.9	1/982	1/7748
SNV	Breast	SLC25A20_S53P_3	HLA-A24:02	MYPGTFDCF	0.9948	0.515	0.0135	1.76	0.0429	15.8	1/982	1/7748
SNV	Breast	SLC25A20_S53P_4	HLA-A24:02	PMYPGTFDCF	0.986	0.5498	0.9165	346.52	0.6326	15.8	1/982	1/7748
SNV	Breast	SLC2A4RG_R369W_7	HLA-A24:02	VYGMERWDL	0.9775	0.5045	0.2621	26.39	0.2982	174.57	1/982	1/7748
SNV	Breast	SLC2A4RG_R369W_7	HLA-A24:02	VYGMERWDLW	0.9961	0.702	0.4661	5.51	0.156	174.57	1/982	1/7748
SNV	Breast	SLC35B1_R120W_7	HLA-C07:02	ARVDRTWSW	0.7945	0.9621	0.4571	72.98	0.1653	34.72	1/982	1/7748
SNV	Breast	SLC6A6_L390R_2	HLA-C07:02	IRFFIMLLL	0.9761	0.7528	0.1449	106.19	0.2001	16.62	1/982	1/7748
SNV	Breast	SMG1_N2718D_6	HLA-C08:02	YAADIDSRL	0.9957	0.9768	0.3146	12.76	0.0227	36.11	1/982	1/7748
SNV	Breast	SNRNP200_L1401V_3	HLA-B39:06	DRVNKKVVL	0.9937	0.549	0.2421	98.5	0.192	258.09	1/982	1/7748
SNV	Breast	SNRNP200_L1401V_2	HLA-C07:02	RVNKKVVLL	0.9922	0.9562	0.972	405.48	0.3665	258.09	1/982	1/7748
SNV	Breast	SPIN3_M158V_6	HLA-A24:02	AQAPVVNTW	0.9375	0.6139	1.2003	63.64	0.3919	16.38	1/982	1/7748
SNV	Breast	SPTLC3_M523I_5	HLA-C08:02	ALDEIGDLL	0.9989	0.9672	0.006	5.59	0.012	5.51	1/982	1/7748
SNV	Breast	SRRM2_A2108E_7	HLA-B39:06	SRTPPVEL	0.9998	0.7139	1.6069	423.13	0.3422	142.5	1/982	1/7748
SNV	Breast	SUCO_S1012R_2	HLA-B39:06	QRYLVISL	0.9995	0.6155	0.3423	224.51	0.2679	46.8	1/982	1/7748
SNV	Breast	SUCO_S1012R_2	HLA-B39:06	QRYLVISLV	0.9962	0.7256	0.2295	300.66	0.2972	46.8	1/982	1/7748
SNV	Breast	SUCO_S1012R_1	HLA-C07:02	RYLVISLVL	0.5266	0.8664	0.9604	291.17	0.3176	46.8	1/982	1/7748
SNV	Breast	SUN2_S370T_6	HLA-B39:06	EHQQDTEDL	0.8308	0.7705	0.6729	446.27	0.3494	65.05	1/982	1/7748
SNV	Breast	SUPT6H_Y1141H_1	HLA-B39:06	HRSPNTEEI	0.9949	0.7144	0.1219	10	0.0633	50.65	1/982	1/7748
SNV	Breast	SUPT6H_Y1141H_1	HLA-C07:02	HRSPNTEEI	0.8237	0.9502	0.2351	100.4	0.1946	50.65	1/982	1/7748
SNV	Breast	SYN1_K697M_3	HLA-C07:02	LRMSFASLF	0.958	0.9671	0.0343	9.9	0.0484	6.09	1/982	1/7748
SNV	Breast	TBC1D15_F424L_9	HLA-C07:02	NRTDRTNKL	0.8001	0.7318	0.1399	102.47	0.1966	23.59	1/982	1/7748
SNV	Breast	TGFBI_L120M_1	HLA-C07:02	MYTDRTEKL	0.5496	0.9257	0.0926	18.38	0.0737	81.7	1/982	1/7748
SNV	Breast	TJP2_G23C_5	HLA-B39:06	LRAPCMEEL	0.9958	0.8745	0.307	308.2	0.2997	46.85	1/982	1/7748
SNV	Breast	TMCC1_V365A_8	HLA-B39:06	THSAAGAAV	0.9977	0.9755	0.008	2.89	0.0232	48.08	1/982	1/7748
SNV	Breast	TMCO1_V86A_1	HLA-B14:02	ARMKSMFAI	0.9891	0.9336	0.1385	363.9	0.0735	107.24	1/982	1/7748
SNV	Breast	TMCO1_V86A_7	HLA-B39:06	NRDLSMARM	0.992	0.6758	1.3005	141.88	0.2236	107.24	1/982	1/7748
SNV	Breast	TMCO1_V86A_1	HLA-B39:06	ARMKSMFAI	0.9922	0.8489	0.3169	73.87	0.1719	107.24	1/982	1/7748
SNV	Breast	TMCO1_V86A_1	HLA-C07:02	ARMKSMFAI	0.9603	0.9718	0.1884	43.3	0.1213	107.24	1/982	1/7748
SNV	Breast	TMEM117_V477I_9	HLA-B39:06	IRSDFNEII	0.9845	0.5534	0.2218	87.48	0.1837	3.17	1/982	1/7748
SNV	Breast	TMEM19_V313A_7	HLA-C08:02	ILDNNAANL	0.9998	0.9707	0.0191	9.49	0.0187	20.43	1/982	1/7748
SNV	Breast	TMEM41A_Y68H_5	HLA-B14:02	EHQAHVFLL	0.9941	0.5256	0.0432	141.85	0.0414	16.27	1/982	1/7748
SNV	Breast	TMEM41A_Y68H_5	HLA-B39:06	EHQAHVFLL	0.999	0.6942	0.0304	2.22	0.016	16.27	1/982	1/7748
SNV	Breast	TMEM41A_Y68H_8	HLA-C07:02	YRKEHQAHV	0.6957	0.8681	0.0899	89.21	0.1831	16.27	1/982	1/7748
SNV	Breast	TMEM41A_Y68H_8	HLA-C07:02	YRKEHQAHVF	0.9963	0.8307	0.0969	127.08	0.2194	16.27	1/982	1/7748
SNV	Breast	TPP1_Q509R_3	HLA-A24:02	LYRQHGAGLF	0.9864	0.5742	0.2061	125.8	0.4848	165.33	1/982	1/7748
SNV	Breast	TPP1_Q509R_2	HLA-C07:02	YRQHGAGLF	0.8788	0.9271	0.0158	13.98	0.0624	165.33	1/982	1/7748
SNV	Breast	TRIM24_N265I_11	HLA-A24:02	RYQFIEEAFQI	0.9962	0.514	0.7971	157.15	0.5159	26.4	1/982	1/7748
SNV	Breast	USP22_L245P_5	HLA-A24:02	PYKLPHLVW	0.9841	0.9078	0.8699	35.9	0.3307	134.66	1/982	1/7748
SNV	Breast	USP40_I1119L_10	HLA-B39:06	YRLPVEKIEL	0.998	0.8414	0.8388	11.89	0.0684	14.47	1/982	1/7748
SNV	Breast	USP40_I1119L_10	HLA-C07:02	YRLPVEKIEL	0.9983	0.9742	0.2294	100.32	0.1945	14.47	1/982	1/7748
SNV	Breast	USP6NL_A613P_3	HLA-B39:06	SHPRYPSQL	0.9943	0.8267	0.4099	190.06	0.2512	17.79	1/982	1/7748
SNV	Breast	UTP20_L159P_4	HLA-B39:06	YKYPWRLMV	0.9896	0.8585	0.9104	161.25	0.2357	20.87	1/982	1/7748
SNV	Breast	UTP20_L159P_4	HLA-C07:02	YKYPWRLMV	0.5892	0.9734	1.073	94.11	0.1883	20.87	1/982	1/7748
SNV	Breast	VDAC1_Y67H_5	HLA-A24:02	RWTEHGLTF	0.9972	0.5822	0.0294	1.31	0.0167	260.41	1/982	1/7748
SNV	Breast	VDAC1_Y67H_7	HLA-A24:02	KYRWTEHGLTF	0.9998	0.579	0.2421	5.74	0.1603	260.41	1/982	1/7748
SNV	Breast	VDAC1_Y67H_5	HLA-C07:02	RWTEHGLTF	0.7041	0.9746	0.0862	23.5	0.0844	260.41	1/982	1/7748
SNV	Breast	VDAC1_Y67H_6	HLA-C07:02	YRWTEHGLTF	0.9994	0.9529	0.0447	9.36	0.0453	260.41	1/982	1/7748
SNV	Breast	VSIG10_N452T_1	HLA-C08:02	TMDDVMVLV	0.992	0.9821	0.0432	23.51	0.0339	10.43	1/982	1/7748
SNV	Breast	XDH_F1143V_10	HLA-B39:06	YRTPNLGYSV	0.999	0.7892	1.1998	127.45	0.2135	9.88	1/982	1/7748
SNV	Breast	YY1AP1_P374S_8	HLA-B14:02	EREEHRLSF	0.9917	0.5025	0.415	134.55	0.0395	73.79	1/982	1/7748
SNV	Breast	YY1AP1_P374S_8	HLA-C07:02	EREEHRLSF	0.9497	0.8942	0.2671	143.23	0.2323	73.79	1/982	1/7748
SNV	Breast	ZC3HAV1_H124P_7	HLA-B39:06	FKVLKNPEL	0.9949	0.8043	0.4269	383.58	0.329	47.46	1/982	1/7748
SNV	Breast	ZDHHC13_V618A_8	HLA-B39:06	FHPAREKAL	0.9806	0.6881	0.2461	267.76	0.2856	28.33	1/982	1/7748
SNV	Breast	ZFAT_G398D_4	HLA-B14:02	TREDKRQLL	0.9779	0.7213	0.1638	439.12	0.0806	13.05	1/982	1/7748
SNV	Breast	ZFAT_G398D_4	HLA-C07:02	TREDKRQLL	0.8824	0.9663	0.2351	175.38	0.2545	13.05	1/982	1/7748
SNV	Breast	ZFHX4_I1743M_3	HLA-C07:02	FYMPGTEF	0.9929	0.9731	0.2351	53.02	0.138	2.56	1/982	1/7748
SNV	Breast	ZFHX4_I1743M_3	HLA-C07:02	FYMPGTEFSL	0.9674	0.9663	0.3008	86	0.1795	2.56	1/982	1/7748
SNV	Breast	ZNF117_Q131R_4	HLA-C07:02	KRIRTRVNF	0.9103	0.9196	0.2402	100.3	0.1945	8.61	1/982	1/7748
SNV	Breast	ZNF233_V36A_5	HLA-A24:02	LYQDAMLENF	0.9994	0.7193	0.099	2.11	0.0631	2.24	1/982	1/7748
SNV	Breast	ZNF34_E124G_4	HLA-A24:02	EYKGLTSQETF	0.9992	0.5932	0.3977	97.85	0.4497	6.58	1/982	1/7748
SNV	Breast	ZNF846_V102A_7	HLA-B14:02	ERSPNGAQL	0.9976	0.6644	0.0766	124.43	0.0377	2.25	1/982	1/7748
SNV	Breast	ZNF846_V102A_7	HLA-B39:06	ERSPNGAQL	0.998	0.7231	0.3321	17.07	0.0857	2.25	1/982	1/7748
SNV	Breast	ZNF846_V102A_7	HLA-C07:02	ERSPNGAQL	0.7984	0.7936	0.3874	230.62	0.2866	2.25	1/982	1/7748
SNV	Breast	CDC14A_A427E_4	HLA-B07:02	HPREVSQPFRL	0.9998	0.5652	0.2938	71.06	0.2356	2.92	1/982	1/7748
SNV	Breast	DCHS1_L3204V_9	HLA-B07:02	APRIDPPPV	0.9995	0.7616	0.0372	2.83	0.0496	11.94	1/982	1/7748
SNV	Breast	DCHS1_L3204V_9	HLA-B07:02	APRIDPPPVI	0.9968	0.7238	0.1388	4.38	0.0693	11.94	1/982	1/7748
SNV	Breast	IFT122_T370S_3	HLA-A02:06	SMSDVIVQHL	0.9957	0.6101	0.2086	101	0.3181	61.9	1/982	1/7748
SNV	Breast	IFT122_T370S_6	HLA-C07:02	YRDSMSDVI	0.7463	0.8638	0.6807	394.26	0.3624	61.9	1/982	1/7748
SNV	Breast	KIAA1324L_D813Y_5	HLA-A02:06	SQIPYVHFF	0.8441	0.6451	1.1475	7.23	0.1007	2.12	1/982	1/7748
SNV	Breast	KIAA1324L_D813Y_5	HLA-C07:02	SQIPYVHFF	0.9242	0.9634	0.024	27.82	0.0938	2.12	1/982	1/7748
SNV	Breast	NHLRC1_D195A_1	HLA-C07:02	ARSIKVFDF	0.7985	0.9076	0.1481	163.24	0.2464	15.7	1/982	1/7748
SNV	Breast	RUSC2_E1049G_3	HLA-A02:06	VLGDGLKAFV	0.9864	0.6304	0.6076	452.58	0.5579	6.18	1/982	1/7748
SNV	Breast	AP3B1_L112F_6	HLA-B44:03	EEQQDFALL	0.9629	0.9054	0.2265	128.87	0.3025	73.17	1/982	1/7748
SNV	Breast	AP3B1_L112F_1	HLA-C02:02	FALLSISTF	0.5452	0.9797	0.0648	216.56	0.279	73.17	1/982	1/7748
SNV	Breast	DDX18_R369Q_7	HLA-C02:02	FSATQTQKV	0.7502	0.9652	0.1806	472.73	0.4551	56.51	1/982	1/7748
SNV	Breast	DIAPH2_I347K_7	HLA-B44:03	YELDFRKHL	0.9609	0.9257	0.1534	4.52	0.0827	11.66	1/982	1/7748
SNV	Breast	DST_R2200Q_8	HLA-C02:02	KMKDLSAQF	0.6186	0.9407	0.17	231.18	0.2897	23.09	1/982	1/7748
SNV	Breast	GRID1_V745M_7	HLA-A02:01	FLWDVAMV	0.999	0.792	1.1118	9.7	0.1562	1.78	1/982	1/7748
SNV	Breast	GRID1_V745M_7	HLA-A02:01	FLWDVAMVEYA	0.9996	0.616	1.2385	96.67	0.3872	1.78	1/982	1/7748
SNV	Breast	LRRC41_E429K_8	HLA-B44:03	GEKEDGEKM	0.9908	0.9641	0.3393	228.65	0.3475	55.28	1/982	1/7748
SNV	Breast	RPS4X_I102M_1	HLA-C04:01	MYDTKGRF	0.9998	0.5622	0.1022	248.21	0.1112	1474.15	1/982	1/7748
SNV	Breast	RPS4X_I102M_1	HLA-C04:01	MYDTKGRFAV	0.9989	0.8763	0.2146	472.24	0.1505	1474.15	1/982	1/7748
SNV	Breast	SORL1_H476Y_1	HLA-A02:01	YLAQRLSQL	0.9952	0.7051	0.072	2.62	0.0575	27.7	1/982	1/7748
SNV	Breast	SORL1_H476Y_1	HLA-C02:02	YLAQRLSQL	0.9867	0.9802	0.7215	48.77	0.1026	27.7	1/982	1/7748
SNV	Breast	WEE1_L584F_5	HLA-B27:02	LRIEFNAEKF	0.9999	0.7085	0.0155	3.05	0.1217	21.04	1/982	1/7748
SNV	Breast	WEE1_L584F_8	HLA-B44:03	AEQLRIEF	0.9997	0.9547	0.5049	471.42	0.4061	21.04	1/982	1/7748
SNV	Breast	ZNF229_R388Q_5	HLA-C02:02	KAFGQSSNL	0.9556	0.9898	0.0793	138.22	0.2062	12.93	1/982	1/7748
SNV	Breast	CEP131_E908G_4	HLA-B14:02	HRLGADMAL	0.9976	0.8877	0.0451	59.54	0.0222	14.13	1/982	1/7748
SNV	Breast	FKBP8_D151Y_6	HLA-A02:01	TLGDCYVIQA	0.9528	0.6279	0.9966	458.81	0.6565	215.66	1/982	1/7748
SNV	Breast	ADAMTSL4_K940N_9	HLA-B27:05	RRDIICVSNL	0.9957	0.8591	0.4551	240.95	0.5062	11.27	1/982	1/7748
SNV	Breast	AGO3_H808R_2	HLA-B27:05	ARLVAFRAR	0.9991	0.7772	0.3465	89.7	0.3956	4.77	1/982	1/7748
SNV	Breast	AGO3_H808R_2	HLA-B27:05	ARLVAFRARY	0.9999	0.9285	0.2193	25.05	0.267	4.77	1/982	1/7748
SNV	Breast	AMDHD1_H265Q_1	HLA-B08:01	QPMKAAEL	0.989	0.8779	0.5148	94.97	0.1648	23.54	1/982	1/7748
SNV	Breast	ARFGEF1_G1041R_2	HLA-B27:05	LRNSWHEIL	0.9943	0.8975	0.5088	322.74	0.5443	39.6	1/982	1/7748
SNV	Breast	ARFGEF1_G1041R_2	HLA-C07:01	LRNSWHEIL	0.9941	0.7059	0.0876	82.31	0.0797	39.6	1/982	1/7748
SNV	Breast	ATG7_C358Y_1	HLA-A02:01	YLLLGAGTL	0.8975	0.65	0.324	56.36	0.3178	11.13	1/982	1/7748
SNV	Breast	ATP13A3_A1191V_5	HLA-A02:01	YMYLVQELL	0.9901	0.5563	0.1151	20.19	0.2182	71.2	1/982	1/7748
SNV	Breast	BRWD1_E401D_7	HLA-B27:05	WRFEQLDWR	0.9983	0.8652	0.6518	53.16	0.3399	16.07	1/982	1/7748
SNV	Breast	C15orf39_A1013V_8	HLA-B27:05	FRSLLETVW	0.9954	0.8318	0.7686	315.44	0.5413	30.71	1/982	1/7748
SNV	Breast	C15orf39_A1013V_10	HLA-B27:05	ARFRSLLETV	0.9999	0.8605	0.2929	93.11	0.3996	30.71	1/982	1/7748
SNV	Breast	CABLES1_L428P_4	HLA-B27:05	FRNPSHRSL	0.9981	0.8988	0.2409	38.14	0.3045	42.57	1/982	1/7748
SNV	Breast	CABLES1_L428P_4	HLA-C07:01	FRNPSHRSL	0.9978	0.7253	0.0158	1.77	0.0034	42.57	1/982	2/7748
SNV	Breast	CCDC68_T26M_6	HLA-A02:01	ALYESMSAHI	0.9971	0.6439	0.4576	203.45	0.5097	3.45	1/982	1/7748
SNV	Breast	CCDC93_R317W_3	HLA-B27:05	HRWKVISL	1	0.9495	0.6232	28.9	0.2795	14.18	1/982	1/7748
SNV	Breast	CCDC93_R317W_3	HLA-B27:05	HRWKVISLNK	0.9998	0.9139	0.1303	7.83	0.1739	14.18	1/982	1/7748
SNV	Breast	CCIN_L365F_9	HLA-A02:01	KLPDLPIGFV	0.9965	0.7045	0.2691	8.13	0.1418	1.22	1/982	1/7748
SNV	Breast	CDC42BPB_K489R_1	HLA-A02:01	RLNEEIERL	0.9987	0.6605	0.5138	1.82	0.0399	60.19	1/982	1/7748
SNV	Breast	CDC42BPB_K489R_2	HLA-B27:05	KRLNEEIER	0.9992	0.9199	0.1732	14.42	0.2233	60.19	1/982	1/7748
SNV	Breast	CDC42BPB_K489R_2	HLA-B27:05	KRLNEEIERL	1	0.9109	0.0686	37.97	0.304	60.19	1/982	1/7748
SNV	Breast	CEP112_Y66H_3	HLA-B08:01	NLHAKLLL	0.9995	0.7717	0.1546	43.25	0.107	4.32	1/982	1/7748
SNV	Breast	CEP112_Y66H_1	HLA-B08:01	HAKLLLHML	0.9687	0.7193	0.0419	438.42	0.316	4.32	1/982	1/7748
SNV	Breast	CEP112_Y66H_5	HLA-C07:01	NRNLHAKLL	0.9942	0.738	0.1809	84.61	0.0806	4.32	1/982	1/7748
SNV	Breast	CEP135_L632S_7	HLA-B08:01	ELKSKVSI	0.9998	0.5261	0.1088	9.33	0.0372	5.76	1/982	1/7748
SNV	Breast	CEP135_L632S_7	HLA-B08:01	ELKSKVSIM	0.9983	0.5528	0.026	4	0.017	5.76	1/982	1/7748
SNV	Breast	CEP95_R711S_7	HLA-B27:05	QRLRDLSNY	0.9995	0.8109	0.252	13.62	0.219	28.31	1/982	1/7748
SNV	Breast	CHD1L_K661E_7	HLA-B27:05	RRLIEEEKR	0.9983	0.9075	0.2085	230.29	0.5003	133.27	1/982	1/7748
SNV	Breast	CNOT6_G550S_7	HLA-A02:01	FLPQVNSIHL	0.9779	0.6243	0.4216	401.88	0.6273	21.56	1/982	1/7748
SNV	Breast	CREB3L4_R195H_8	HLA-A02:01	FLTDEEKHL	0.9853	0.7008	0.4094	16.45	0.2008	102.14	1/982	1/7748
SNV	Breast	CREB3L4_R195H_8	HLA-A02:01	FLTDEEKHLL	0.992	0.7329	0.5871	5.33	0.1089	102.14	1/982	1/7748
SNV	Breast	CREB3L4_R195H_1	HLA-A02:01	HLLGQEGVSL	0.9721	0.7344	0.7638	451.78	0.6531	102.14	1/982	1/7748
SNV	Breast	DAAM2_G887S_1	HLA-A02:01	SLRAVEVEL	0.8509	0.686	0.9515	357.59	0.6015	4.3	1/982	1/7748
SNV	Breast	DAAM2_G887S_7	HLA-B08:01	VGNLRRSL	0.9988	0.5448	0.3305	35.67	0.0934	4.3	1/982	1/7748
SNV	Breast	DAAM2_G887S_5	HLA-B08:01	NLRRSLRAV	0.995	0.7693	0.148	291.27	0.2691	4.3	1/982	1/7748
SNV	Breast	DAAM2_G887S_3	HLA-C07:01	RRSLRAVEV	0.9687	0.6577	0.1476	225.49	0.1203	4.3	1/982	1/7748
SNV	Breast	DHX35_S332P_7	HLA-A02:01	KVFERVPRSV	0.9589	0.6665	1.1118	197.88	0.5052	12.01	1/982	1/7748
SNV	Breast	DOCK9_P523S_4	HLA-B27:05	YRMSFAWAA	0.9995	0.6828	0.6617	20.88	0.2512	10.32	1/982	1/7748
SNV	Breast	DOCK9_P523S_4	HLA-B27:05	YRMSFAWAAR	0.9999	0.8416	0.729	152.22	0.4542	10.32	1/982	1/7748
SNV	Breast	DOK2_S169P_5	HLA-B08:01	HLRGPYTL	0.9879	0.6167	0.3089	50.08	0.1171	20.91	1/982	1/7748
SNV	Breast	DST_D71Y_9	HLA-B27:05	ERAVLRIAY	0.9984	0.677	0.4551	44.15	0.3201	4.88	1/982	1/7748
SNV	Breast	EDEM2_L569S_4	HLA-A02:01	KLASLGQVFL	0.9942	0.5742	0.3811	234.05	0.5324	97.21	1/982	1/7748
SNV	Breast	EEA1_E369G_9	HLA-B27:05	HRIHVELSGK	0.9998	0.8175	0.252	120.44	0.4282	8.37	1/982	1/7748
SNV	Breast	EFR3A_R70H_4	HLA-B27:05	VRHHSGYVL	0.9964	0.8858	0.3224	162.64	0.4616	66.09	1/982	1/7748
SNV	Breast	EFR3A_R70H_4	HLA-C07:01	VRHHSGYVL	0.9921	0.6947	0.0191	48.02	0.0639	66.09	1/982	1/7748
SNV	Breast	EML3_A696P_3	HLA-A02:01	YLPIGSHDNV	0.9689	0.541	0.8791	420.81	0.6374	29.18	1/982	1/7748
SNV	Breast	EPHB1_V391I_3	HLA-B27:05	CRISISSLW	0.9972	0.6266	1.1219	436.67	0.5836	12.15	1/982	1/7748
SNV	Breast	EXPH5_V1591A_5	HLA-C07:01	NRSSAKHRL	0.9922	0.6563	0.1431	464.93	0.1695	7.06	1/982	1/7748
SNV	Breast	FADS2_M345V_7	HLA-A02:01	QMNHIVVEI	0.9937	0.5646	0.2576	49.28	0.3005	492.52	1/982	1/7748
SNV	Breast	FARP1_T1016M_8	HLA-B27:05	FRAESEYMF	0.9989	0.9321	0.1003	6.51	0.1609	38.31	1/982	1/7748
SNV	Breast	FARP1_T1016M_8	HLA-C07:01	FRAESEYMF	0.9978	0.6865	0.048	28.88	0.047	38.31	1/982	1/7748
SNV	Breast	FMNL3_E493Q_8	HLA-B08:01	LARVGPAQL	0.9606	0.642	0.184	262.07	0.2578	10.65	1/982	1/7748
SNV	Breast	FOXC2_S152C_6	HLA-A02:01	TLDPDCYNM	0.9498	0.6166	0.6596	299.7	0.5725	65.18	1/982	1/7748
SNV	Breast	GALNT12_L404M_3	HLA-B27:05	ARMEPFGDV	0.9943	0.5642	0.3341	50.76	0.335	3.21	1/982	1/7748
SNV	Breast	GLI3_I808L_9	HLA-C01:02	KAPAVSPLL	0.7251	0.9231	0.0095	342.81	0.0339	2.85	1/982	1/7748
SNV	Breast	GOLGA1_A421S_8	HLA-A02:01	ALEAQIVSL	0.9749	0.5737	0.568	11.03	0.1665	11.96	1/982	1/7748
SNV	Breast	GOLGA1_A421V_8	HLA-A02:01	ALEAQIVVL	0.9712	0.6024	0.797	89.07	0.3766	11.96	1/982	1/7748
SNV	Breast	GRAMD4_W246R_2	HLA-B27:05	VRHGWAIPL	0.998	0.8801	0.0686	20.61	0.25	30.44	1/982	1/7748
SNV	Breast	GRAMD4_W246R_2	HLA-B27:05	VRHGWAIPLF	0.9999	0.8249	0.3115	8.8	0.1839	30.44	1/982	1/7748
SNV	Breast	GRAMD4_W246R_2	HLA-B27:05	VRHGWAIPLFL	0.9999	0.6971	0.6148	472.9	0.594	30.44	1/982	1/7748
SNV	Breast	GRAMD4_W246R_2	HLA-C07:01	VRHGWAIPL	0.9905	0.7515	0.0054	91.9	0.0838	30.44	1/982	1/7748
SNV	Breast	GRN_A431V_3	HLA-B08:01	MPVRRASL	0.9996	0.6412	0.0776	3.57	0.0152	441.9	1/982	1/7748
SNV	Breast	HERC1_R823Q_8	HLA-B27:05	GRQAGPLQNL	0.9999	0.6603	0.1732	8.28	0.1785	14.18	1/982	1/7748
SNV	Breast	HERC1_R823Q_8	HLA-B27:05	GRQAGPLQNLL	1	0.5304	0.3224	481.3	0.5963	14.18	1/982	1/7748
SNV	Breast	HIRA_T101M_2	HLA-A02:01	AMYIGPSTV	0.9856	0.664	0.1465	5.72	0.1141	10.2	1/982	1/7748
SNV	Breast	HIRA_T101M_1	HLA-C07:01	MYIGPSTVF	0.7741	0.8005	0.475	354.93	0.1505	10.2	1/982	1/7748
SNV	Breast	HSPBAP1_T462M_2	HLA-A02:01	SMDDLLDCL	0.9307	0.5168	0.2775	149.89	0.458	7.22	1/982	1/7748
SNV	Breast	HTATSF1_R340P_7	HLA-B27:05	GRWFGGPQI	0.9996	0.5543	0.1303	1.17	0.0113	230.09	1/982	1/7748
SNV	Breast	HTATSF1_R340P_7	HLA-C07:01	GRWFGGPQI	0.9861	0.745	0.1431	163.02	0.1082	230.09	1/982	1/7748
SNV	Breast	IFT80_W532R_2	HLA-B27:05	VRYYPNTVY	0.999	0.8598	0.077	1.82	0.0532	9.85	1/982	1/7748
SNV	Breast	IGLL5_V105L_9	HLA-A02:01	YVFGTGTKL	0.9008	0.5963	0.2625	193.96	0.502	310.66	1/982	1/7748
SNV	Breast	IMPA2_Q275H_7	HLA-B08:01	MAMLIAHAL	0.9405	0.9224	0.0181	136.42	0.1997	154.49	1/982	1/7748
SNV	Breast	INO80D_R425W_7	HLA-A02:01	QLIQELWRA	0.9885	0.6747	0.3324	13.67	0.1845	4.47	1/982	1/7748
SNV	Breast	IPO13_S133N_8	HLA-A02:01	ALASLALNM	0.9627	0.5479	0.8398	217.65	0.5206	29.24	1/982	1/7748
SNV	Breast	IQGAP3_H815Y_3	HLA-A02:01	RLYYFQKNV	0.9854	0.6347	0.8186	99.12	0.3904	16.89	1/982	1/7748
SNV	Breast	IQGAP3_H815Y_9	HLA-B27:05	RRQYLRRLY	0.9987	0.8182	0.252	83.04	0.3874	16.89	1/982	1/7748
SNV	Breast	IQGAP3_H815Y_9	HLA-B27:05	RRQYLRRLYY	0.9999	0.676	0.2193	277.94	0.5248	16.89	1/982	1/7748
SNV	Breast	ITIH6_P738L_3	HLA-B08:01	LLLLKPGSL	0.9867	0.9125	0.0103	30.91	0.0843	5.26	1/982	1/7748
SNV	Breast	KIAA0430_A1152T_8	HLA-A02:01	KLIELLETV	0.9996	0.7646	0.0177	1.11	0.0078	31.86	1/982	1/7748
SNV	Breast	KIAA0430_A1152T_5	HLA-A02:01	ELLETVPHV	0.9905	0.503	0.1866	2.61	0.0572	31.86	1/982	1/7748
SNV	Breast	KIAA0430_A1152T_4	HLA-A02:01	LLETVPHVL	0.9595	0.7729	0.6655	304.27	0.5749	31.86	1/982	1/7748
SNV	Breast	KIF15_M1263L_1	HLA-B08:01	LLKMKADL	0.9995	0.5449	0.1523	70.09	0.1423	18.14	1/982	1/7748
SNV	Breast	KIRREL_T233M_8	HLA-A02:01	TLSIEPQMV	0.968	0.5121	0.7911	251.81	0.5443	13.2	1/982	1/7748
SNV	Breast	KLC2_R348Q_1	HLA-B27:05	QRALEIYATR	0.9999	0.6435	0.8406	151.18	0.4535	23.52	1/982	1/7748
SNV	Breast	KMT2D_S4871R_2	HLA-B27:05	KRQLDILSL	0.9999	0.8485	0.3018	1.57	0.0411	8.08	1/982	1/7748
SNV	Breast	KMT2D_S4871R_1	HLA-B27:05	RQLDILSLL	0.9935	0.7898	0.2085	441.68	0.5851	8.08	1/982	1/7748
SNV	Breast	KMT2D_S4871R_2	HLA-B27:05	KRQLDILSLL	0.9999	0.8345	0.3812	2.73	0.0861	8.08	1/982	1/7748
SNV	Breast	KMT2D_S4871R_2	HLA-C07:01	KRQLDILSL	0.9977	0.5328	0.048	240.73	0.1228	8.08	1/982	1/7748
SNV	Breast	LAMC1_Q575R_2	HLA-B27:05	GRNLSFSFR	0.9992	0.8336	0.6049	171.34	0.4674	132.53	1/982	1/7748
SNV	Breast	LRP1_G2139D_6	HLA-B27:05	LRTGIDVQL	0.9993	0.9035	0.3341	4.47	0.1335	47.16	1/982	1/7748
SNV	Breast	LRP1_G2139D_6	HLA-C07:01	LRTGIDVQL	0.9952	0.8342	0.1598	195.36	0.115	47.16	1/982	2/7748
SNV	Breast	LRRC20_N150I_8	HLA-B08:01	MPALRSII	0.9992	0.6134	0.3371	365.63	0.2934	10.22	1/982	1/7748
SNV	Breast	LRRC20_N150I_8	HLA-B08:01	MPALRSIIL	0.9972	0.5891	0.0226	6.65	0.0288	10.22	1/982	1/7748
SNV	Breast	LRRC8D_I702V_9	HLA-A02:01	KIVTIPPSV	0.9755	0.7261	0.1691	7.31	0.1329	49.94	1/982	1/7748
SNV	Breast	LYSMD1_V109L_2	HLA-A02:01	KLHPSNSEV	0.9769	0.8109	0.1866	42.58	0.2862	70.74	1/982	1/7748
SNV	Breast	MAP3K9_S548R_2	HLA-C07:01	SRPPASPTI	0.9925	0.568	0.1809	171.19	0.1101	2.5	1/982	1/7748
SNV	Breast	MTMR11_A697T_8	HLA-A02:01	ILNPTEITGI	0.9901	0.5669	0.9411	123.9	0.4254	29.52	1/982	1/7748
SNV	Breast	MYCBP2_G2188E_7	HLA-A02:01	ILEALEENL	0.9598	0.5862	1.6803	398.4	0.6253	9.95	1/982	1/7748
SNV	Breast	MYH10_H777R_8	HLA-B27:05	FRAGVLARL	0.9997	0.9544	0.1245	3.19	0.1021	51.65	1/982	1/7748
SNV	Breast	MYH10_H777R_2	HLA-B27:05	ARLEEERDL	0.9963	0.8354	0.3583	462.4	0.5911	51.65	1/982	1/7748
SNV	Breast	MYH10_H777R_8	HLA-C07:01	FRAGVLARL	0.9982	0.8559	0.0245	7.76	0.0139	51.65	1/982	1/7748
SNV	Breast	NAALADL1_Y541H_4	HLA-B27:05	ARIHPTYHTAF	1	0.6786	0.0161	6.59	0.1618	1.68	1/982	1/7748
SNV	Breast	NAV1_D1629N_5	HLA-A02:01	ILLDNLSEA	0.9981	0.5943	0.1535	1.75	0.0372	4.99	1/982	1/7748
SNV	Breast	NDUFS2_A426T_7	HLA-B27:05	YRCKIKTPGF	0.9995	0.8435	0.3465	74.08	0.3752	138	1/982	1/7748
SNV	Breast	NLRP1_Q280L_8	HLA-B08:01	DFNQKFTLL	0.9226	0.5057	0.1864	149.21	0.2076	3.84	1/982	1/7748
SNV	Breast	NPAT_A855V_5	HLA-A02:01	QLMPVTSTA	0.9704	0.5037	0.1084	50.65	0.304	20.46	1/982	1/7748
SNV	Breast	NUP160_L1075I_6	HLA-B27:05	ARAVDIMTHNY	1	0.6979	0.1191	39.57	0.3084	34.32	1/982	1/7748
SNV	Breast	NYNRIN_V338L_7	HLA-A02:01	LLFQPPLSA	0.9879	0.7259	0.2506	16.11	0.199	51.33	1/982	1/7748
SNV	Breast	NYNRIN_V338L_7	HLA-A02:01	LLFQPPLSAL	0.9827	0.7421	0.4435	306.01	0.5759	51.33	1/982	1/7748
SNV	Breast	P2RY10_L299I_1	HLA-C01:02	ILDPILYYF	0.9876	0.8455	0.7646	442.5	0.045	5.77	1/982	1/7748
SNV	Breast	PCDHB10_I288T_1	HLA-B27:05	TRTTFQINPF	0.9999	0.509	0.8286	459.55	0.5903	6.11	1/982	1/7748
SNV	Breast	PCNT_Q2455P_7	HLA-B27:05	WRGDLLPVV	0.9956	0.8232	0.6709	411.26	0.5758	9.33	1/982	1/7748
SNV	Breast	PDZK1IP1_I46T_5	HLA-A02:01	VLVATAFAV	0.9887	0.6037	0.0088	65.94	0.338	16.53	1/982	1/7748
SNV	Breast	PFKP_F59Y_1	HLA-A02:01	YIYEGYQGM	0.9586	0.5398	0.2625	10.9	0.1655	40.46	1/982	1/7748
SNV	Breast	PFKP_F59Y_1	HLA-A02:01	YIYEGYQGMV	0.9921	0.5173	0.7351	28.4	0.2471	40.46	1/982	1/7748
SNV	Breast	PIK3R1_G644S_4	HLA-B27:05	KRDSTFLVR	0.9981	0.8466	0.2929	31.15	0.286	17.68	1/982	1/7748
SNV	Breast	POLA1_A624V_8	HLA-A02:01	TLLGFFLVKV	0.99	0.784	0.1121	311.18	0.5786	26.7	1/982	1/7748
SNV	Breast	POLR1C_V7A_3	HLA-B08:01	EMRSRVVL	0.9999	0.7141	0.0419	2.25	0.0069	56.05	1/982	1/7748
SNV	Breast	PPIL2_N140S_8	HLA-B08:01	QLNIKAKSF	0.8765	0.6773	0.1755	170.54	0.2191	26.11	1/982	1/7748
SNV	Breast	PPTC7_C101R_5	HLA-B08:01	LMRTRERL	0.9993	0.5831	0.2344	86.01	0.1576	25.1	1/982	1/7748
SNV	Breast	PRDM2_R1580K_8	HLA-B27:05	LRNSSPIKM	0.9997	0.9074	0.1914	20.79	0.2508	17.94	1/982	1/7748
SNV	Breast	PRDM2_R1580K_8	HLA-C07:01	LRNSSPIKM	0.9978	0.6958	0.044	11.53	0.0229	17.94	1/982	1/7748
SNV	Breast	RIC1_N1106S_8	HLA-B27:05	TRAARVDSF	0.998	0.5954	0.4199	60.59	0.3538	18.73	1/982	1/7748
SNV	Breast	RIC1_N1106S_5	HLA-B27:05	ARVDSFVIA	0.9991	0.7598	0.7774	102.91	0.4107	18.73	1/982	1/7748
SNV	Breast	RIC1_N1106S_5	HLA-B27:05	ARVDSFVIAL	0.9999	0.7724	0.0455	1.81	0.0525	18.73	1/982	1/7748
SNV	Breast	RIC1_N1106S_5	HLA-B27:05	ARVDSFVIALK	0.9999	0.8582	0.1549	25.95	0.2701	18.73	1/982	1/7748
SNV	Breast	RIC1_N1106S_4	HLA-C01:02	RVDSFVIAL	0.9998	0.899	0.0445	73.97	0.0085	18.73	1/982	1/7748
SNV	Breast	RIOK1_M314T_3	HLA-B27:05	RRTYQDARL	0.9995	0.7812	0.4551	221.91	0.4961	118.43	1/982	1/7748
SNV	Breast	RNF43_L61M_2	HLA-A02:01	KMNLTLEGV	0.9859	0.6753	0.2955	140.5	0.4469	10.36	1/982	1/7748
SNV	Breast	RPS6KA3_D111G_1	HLA-B27:05	GRVRTKMER	0.9973	0.5881	0.3465	157.48	0.458	26.48	1/982	1/7748
SNV	Breast	RUSC2_L324M_4	HLA-A01:01	YLDMQPSPF	0.9655	0.5092	0.5185	49.68	0.326	31.49	1/982	1/7748
SNV	Breast	RYR3_V4172M_2	HLA-B08:01	VMKMTAKEL	0.8944	0.7637	0.1414	381.65	0.298	2.45	1/982	1/7748
SNV	Breast	RYR3_Y3360H_8	HLA-B27:05	KRRGDLYHI	0.9983	0.8473	0.4901	221.76	0.496	2.45	1/982	1/7748
SNV	Breast	SACS_Q835H_1	HLA-A02:01	HLPEFLADI	0.9727	0.7869	0.2829	120.06	0.42	3.2	1/982	1/7748
SNV	Breast	SACS_Q835H_9	HLA-A02:01	ILDDESEAHL	0.9816	0.592	0.5996	34.38	0.2653	3.2	1/982	1/7748
SNV	Breast	SBF1_T839M_9	HLA-B27:05	NRFVDKVCM	0.9995	0.8586	0.6232	323.51	0.5446	21.9	1/982	1/7748
SNV	Breast	SERPINB1_I35M_2	HLA-A02:01	SMSSAMAMV	0.9839	0.6251	0.058	31.41	0.2565	108.03	1/982	1/7748
SNV	Breast	SGSM1_T477M_9	HLA-B27:05	ARWDTTLPM	0.9997	0.6429	0.0018	1.22	0.0158	1.64	1/982	1/7748
SNV	Breast	SGSM1_T477M_9	HLA-C07:01	ARWDTTLPM	0.9983	0.7073	0.0021	67.69	0.0745	1.64	1/982	1/7748
SNV	Breast	SIDT2_R529W_8	HLA-B27:05	QREINHNWAL	0.9971	0.8448	1.674	22.53	0.2578	22.23	1/982	1/7748
SNV	Breast	SIGLEC8_W295L_8	HLA-B08:01	NPPARLSL	0.9997	0.5519	0.3371	29.76	0.082	5.74	1/982	1/7748
SNV	Breast	SIGLEC8_W295L_5	HLA-B27:05	ARLSLTRGSL	0.9999	0.8078	0.1474	36.94	0.3011	5.74	1/982	1/7748
SNV	Breast	SKIV2L_R1208H_7	HLA-A02:01	RLAEMCHSL	0.9958	0.5988	0.0948	6.37	0.1219	33.24	1/982	1/7748
SNV	Breast	SKIV2L_R1208H_8	HLA-B27:05	QRLAEMCHSL	0.9999	0.6994	0.4429	486.6	0.5978	33.24	1/982	1/7748
SNV	Breast	SLC10A3_L26S_1	HLA-B08:01	SSMLRAAL	0.9995	0.6321	0.1504	15.42	0.0548	47.72	1/982	1/7748
SNV	Breast	SLC10A3_L26S_1	HLA-B08:01	SSMLRAALL	0.9946	0.6318	0.0318	188.46	0.2278	47.72	1/982	1/7748
SNV	Breast	SLC6A9_S249N_8	HLA-B27:05	SRPAALPNNL	0.9989	0.8678	0.796	429.49	0.5815	23.59	1/982	1/7748
SNV	Breast	SMIM3_R51Q_4	HLA-B27:05	YRMQTHPIL	0.9997	0.7261	0.051	3.93	0.1234	25.43	1/982	1/7748
SNV	Breast	SMIM3_R51Q_4	HLA-C07:01	YRMQTHPIL	0.9991	0.5816	0.0149	3.17	0.0068	25.43	1/982	1/7748
SNV	Breast	SNRPD2_I115V_6	HLA-B27:05	LRNPLVAGK	0.9984	0.6224	0.199	11.11	0.2038	285.61	3/982	3/7748
SNV	Breast	SNRPD2_I115V_6	HLA-B27:05	LRNPLVAGK	0.9984	0.6224	0.199	11.11	0.2038	285.61	3/982	3/7748
SNV	Breast	SNRPD2_I115V_6	HLA-B27:05	LRNPLVAGK	0.9984	0.6224	0.199	11.11	0.2038	285.61	3/982	3/7748
SNV	Breast	SSC5D_D932Y_10	HLA-B27:05	RRLPDTGSKY	0.9999	0.8551	0.0043	5.11	0.1435	4.39	1/982	1/7748
SNV	Breast	SYNE1_R7507H_5	HLA-B08:01	EMFSHQQIL	0.9673	0.5874	0.1363	293.65	0.27	2.27	1/982	1/7748
SNV	Breast	TATDN2_R209W_9	HLA-B27:05	KRKGEAATW	0.9893	0.8654	0.6709	437.72	0.584	20.69	1/982	1/7748
SNV	Breast	TEP1_S2584N_7	HLA-A02:01	KLWERPNMQL	0.9906	0.6518	0.7911	3.1	0.0683	13.69	1/982	1/7748
SNV	Breast	TEP1_S2584N_7	HLA-A02:01	KLWERPNMQLL	0.9933	0.5451	1.2279	449.33	0.6519	13.69	1/982	1/7748
SNV	Breast	TFAP2C_V306A_3	HLA-A02:01	SLAEGEAVHL	0.9963	0.8382	0.6341	11.94	0.1728	141.61	1/982	1/7748
SNV	Breast	TLL1_I115V_9	HLA-A02:01	ALYQLIDRV	0.9959	0.6726	0.1434	2.18	0.0496	1.1	1/982	1/7748
SNV	Breast	TLR6_E715K_1	HLA-A02:01	KLYFAHHNL	0.9839	0.5814	0.2955	21.22	0.2224	6.77	1/982	1/7748
SNV	Breast	TMEM209_N344D_6	HLA-B27:05	FRNWIDETI	0.9964	0.8557	0.4901	103.43	0.4113	25.18	1/982	1/7748
SNV	Breast	TMEM209_N344D_6	HLA-C07:01	FRNWIDETI	0.991	0.5934	0.1878	170.07	0.1098	25.18	1/982	1/7748
SNV	Breast	TRPM2_V708M_3	HLA-B27:05	TRMSEAWGK	0.9984	0.7092	0.1549	12.9	0.2149	17.02	1/982	1/7748
SNV	Breast	UBE3B_I739F_6	HLA-A02:01	FLEEIFKRV	0.9988	0.5789	0.2458	3.8	0.0787	10.11	1/982	1/7748
SNV	Breast	USP39_V115A_9	HLA-A02:01	YLDTINRSA	0.9907	0.6475	0.4173	36.32	0.2706	90.26	1/982	1/7748
SNV	Breast	USP39_V115A_1	HLA-A02:01	ALDFDFEKL	0.9924	0.6261	0.49	32.32	0.2593	90.26	1/982	1/7748
SNV	Breast	USP39_V115A_4	HLA-B27:05	NRSALDFDF	0.9939	0.8439	0.6326	30.01	0.2828	90.26	1/982	1/7748
SNV	Breast	VANGL1_G205R_2	HLA-B27:05	YRVRILDSR	0.9987	0.8666	0.3115	28.89	0.2795	17.18	1/982	1/7748
SNV	Breast	VWA8_L1064V_9	HLA-B27:05	ARSGMQKLV	0.9971	0.6791	0.4199	492.42	0.5993	16.73	1/982	1/7748
SNV	Breast	WDR33_S1217P_8	HLA-B08:01	SPASRERPSSL	0.9984	0.5283	0.6324	240.93	0.249	20.43	1/982	1/7748
SNV	Breast	XPO5_N636H_5	HLA-A02:01	QLLSHELLL	0.9912	0.6339	0.4143	18.51	0.2108	50.23	1/982	1/7748
SNV	Breast	XYLT1_Q588R_2	HLA-B27:05	FRQTARPTF	0.9988	0.5673	0.0641	31.88	0.2881	5.64	1/982	1/7748
SNV	Breast	XYLT1_Q588R_4	HLA-B27:05	HRFRQTARPTF	1	0.5329	0.015	53.62	0.3408	5.64	1/982	1/7748
SNV	Breast	XYLT1_Q588R_2	HLA-C07:01	FRQTARPTF	0.9957	0.5909	0.0149	16.13	0.0325	5.64	1/982	1/7748
SNV	Breast	ZBTB41_E858K_4	HLA-B08:01	AFLKKYTL	0.9974	0.7037	0.8367	285.45	0.2669	16.5	1/982	1/7748
SNV	Breast	ZBTB41_E858K_5	HLA-B08:01	LAFLKKYTL	0.9972	0.7573	0.0075	6.99	0.0301	16.5	1/982	1/7748
SNV	Breast	ZBTB5_P540S_4	HLA-A02:01	RIASKMPVV	0.9722	0.5169	0.3601	90.73	0.379	26.61	1/982	1/7748
SNV	Breast	ZFAT_A441T_3	HLA-B08:01	HGTTKYQAL	0.968	0.5734	0.0616	14.76	0.0534	9.39	1/982	1/7748
SNV	Breast	DENND2D_V59A_6	HLA-B18:01	FEYLLAVSL	0.9675	0.9295	0.0243	19.25	0.0815	21.6	1/982	1/7748
SNV	Breast	FBXO7_V333L_3	HLA-A02:01	GLLVLPLEL	0.9674	0.5347	0.5579	5.43	0.1103	34.69	1/982	1/7748
SNV	Breast	QSER1_S403F_7	HLA-A02:01	NQQEVLFSV	0.9748	0.5912	0.1989	77.93	0.3595	25.23	1/982	1/7748
SNV	Breast	KIRREL_S396Y_9	HLA-C07:02	YVNGPPIIY	0.7069	0.8213	1.4435	264.71	0.3036	28.17	1/982	1/7748
SNV	Breast	CCT3_R237H_8	HLA-C07:02	RRYIKNPHI	0.9073	0.9306	0.172	61.22	0.1509	360.98	1/982	1/7748
SNV	Breast	CCT3_R237H_5	HLA-C07:02	IKNPHIVLL	0.9266	0.9098	0.1399	42.94	0.1207	360.98	1/982	1/7748
SNV	Breast	CCT3_R237H_7	HLA-C07:02	RYIKNPHIVL	0.9425	0.954	0.5513	352.03	0.3456	360.98	1/982	1/7748
SNV	Breast	GCC2_L534V_3	HLA-A02:01	ALVETVNRL	0.9952	0.5807	0.4392	2.45	0.0546	17.49	1/982	1/7748
SNV	Breast	PHKA1_T811A_3	HLA-A02:01	LLAELYGKV	0.998	0.5521	0.1229	72.77	0.3507	9.67	1/982	1/7748
SNV	Breast	SPTBN2_D1381H_2	HLA-C07:02	FHANRAELF	0.6772	0.9477	0.1675	80.84	0.1737	26.76	1/982	1/7748
SNV	Breast	TLR4_D684Y_1	HLA-C04:01	YEDWVRNEL	0.9989	0.822	0.1289	388.96	0.1363	23.28	1/982	1/7748
SNV	Breast	ACSL5_I558T_5	HLA-B35:01	APEKTENIY	0.9746	0.8999	0.291	4.64	0.0862	12.9	1/982	1/7748
SNV	Breast	ACSL5_I558T_6	HLA-B35:01	IAPEKTENIY	0.9556	0.8159	0.9545	194.67	0.3757	12.9	1/982	1/7748
SNV	Breast	ACSL5_I558T_7	HLA-B35:01	YIAPEKTENIY	0.999	0.7812	1.8247	192.87	0.3747	12.9	1/982	1/7748
SNV	Breast	DNAH7_L1074F_9	HLA-C07:02	LFFPRFFFF	0.7626	0.9559	0.484	96.06	0.1903	1.11	1/982	1/7748
SNV	Breast	DNAH7_L1074F_4	HLA-C07:02	FFFFSNDEL	0.5746	0.9342	0.85	242.34	0.2925	1.11	1/982	1/7748
SNV	Breast	NOL4L_R239H_6	HLA-C07:02	ARKRIHTYL	0.8382	0.9525	0.1834	120.96	0.2141	21.13	1/982	1/7748
SNV	Breast	RABL2B_S52Y_6	HLA-B35:01	QPQQLYTY	0.6722	0.8645	0.4954	353.87	0.4454	7.56	1/982	1/7748
SNV	Breast	RABL2B_S52Y_9	HLA-B35:01	DGFQPQQLY	0.863	0.7925	0.295	76.07	0.2818	7.56	1/982	1/7748
SNV	Breast	DDX6_I400L_3	HLA-B13:02	IDLQAVNVV	0.9141	0.8206	0.5353	100.71	0.0517	53.68	1/982	1/7748
SNV	Breast	INO80C_P192L_9	HLA-C07:02	LRKATSIVL	0.948	0.9636	0.2294	235.82	0.2893	4.54	3/982	3/7748
SNV	Breast	INO80C_P192L_9	HLA-C07:02	LRKATSIVL	0.948	0.9636	0.2294	235.82	0.2893	4.54	3/982	3/7748
SNV	Breast	INO80C_P192L_9	HLA-C07:02	LRKATSIVL	0.948	0.9636	0.2294	235.82	0.2893	4.54	3/982	3/7748
SNV	Breast	ZNF689_S215F_4	HLA-C07:02	KRFFQRKNL	0.9524	0.9181	0.1834	146.78	0.2349	8.66	1/982	1/7748
SNV	Breast	ZNF710_F575L_9	HLA-A03:01	HLHAGSKPLK	0.9972	0.5294	0.34	80.05	0.261	3.92	1/982	1/7748
SNV	Breast	ATP2B2_S860R_9	HLA-A02:01	ILTDDNFSRI	0.962	0.6389	0.9285	78.25	0.36	1.47	1/982	1/7748
SNV	Breast	ATP2B2_S860R_3	HLA-C16:01	FSRIVKAVM	0.7397	0.928	0.1765	340.24	0.7293	1.47	1/982	1/7748
SNV	Breast	ATP2B2_S860T_9	HLA-A02:01	ILTDDNFST	0.9416	0.5349	0.5218	214.42	0.5182	1.47	1/982	1/7748
SNV	Breast	ATP2B2_S860T_9	HLA-A02:01	ILTDDNFSTI	0.9852	0.5236	0.534	44.39	0.2902	1.47	1/982	1/7748
SNV	Breast	ATP2B2_S860T_9	HLA-A02:01	ILTDDNFSTIV	0.9904	0.5381	1.2483	76.99	0.3579	1.47	1/982	1/7748
SNV	Breast	ATP2B2_S860T_8	HLA-C16:01	LTDDNFSTI	0.6262	0.966	0.4339	226.22	0.6111	1.47	1/982	1/7748
SNV	Breast	ATP2B2_S860T_3	HLA-C16:01	FSTIVKAVM	0.938	0.9581	0.2141	320.13	0.712	1.47	1/982	1/7748
SNV	Breast	CASP8_Y226F_10	HLA-B44:03	SESQTLDKVF	0.9995	0.7351	0.0563	9.47	0.1205	11.61	1/982	1/7748
SNV	Breast	CASP8_Y226F_7	HLA-C16:01	QTLDKVFQM	0.9786	0.9764	0.12	44.38	0.2723	11.61	1/982	1/7748
SNV	Breast	DIAPH1_P740A_3	HLA-B35:03	IPAPPPGMGM	0.9716	0.8193	0.038	191.5	0.1291	84.83	1/982	1/7748
SNV	Breast	DNASE1L1_F252L_9	HLA-A02:01	AAFDFPTSL	0.7815	0.6897	0.2829	217.25	0.5203	24.59	1/982	1/7748
SNV	Breast	DNASE1L1_F252L_9	HLA-B35:03	AAFDFPTSL	0.9943	0.9734	0.2381	230.22	0.1387	24.59	1/982	1/7748
SNV	Breast	DNASE1L1_F252L_9	HLA-C16:01	AAFDFPTSL	0.9902	0.9861	0	1.23	0.003	24.59	1/982	1/7748
SNV	Breast	DNASE1L1_F252L_10	HLA-C16:01	AAAFDFPTSL	0.9902	0.9868	0.7019	35.13	0.2385	24.59	1/982	1/7748
SNV	Breast	DNASE1L1_F252L_8	HLA-C04:01	AFDFPTSL	1	0.7778	0.0061	18.63	0.035	24.59	1/982	1/7748
SNV	Breast	DNASE1L1_F252L_8	HLA-C04:01	AFDFPTSLQL	0.9997	0.8213	0.0297	10.56	0.0226	24.59	1/982	1/7748
SNV	Breast	EGFLAM_R642W_8	HLA-B44:03	MEFEITFW	0.9994	0.9455	0.1633	16.41	0.1482	6.86	1/982	1/7748
SNV	Breast	EGFLAM_R642W_1	HLA-B35:03	WPDSGDGVL	0.972	0.8808	0.0725	4.07	0.0211	6.86	1/982	1/7748
SNV	Breast	EGFLAM_R642W_2	HLA-B35:03	FWPDSGDGVL	0.6836	0.9142	1.7785	90.37	0.0989	6.86	1/982	1/7748
SNV	Breast	EGFLAM_R642W_1	HLA-B35:03	WPDSGDGVLL	0.9616	0.8526	0.0703	56.5	0.0812	6.86	1/982	1/7748
SNV	Breast	FAM83F_S316F_3	HLA-C16:01	YSFTVARKL	0.8038	0.9647	0.0136	5.31	0.0513	7.05	1/982	1/7748
SNV	Breast	GRID1_F73I_9	HLA-C16:01	KVIEANNPI	0.7901	0.9663	1.1405	31.05	0.2192	1.69	1/982	1/7748
SNV	Breast	HMCN1_V2661L_9	HLA-B44:03	GEMIKHYEL	0.994	0.904	0.4701	149.89	0.3143	4.43	1/982	1/7748
SNV	Breast	LILRB1_T40S_2	HLA-C16:01	ISQGSPVTL	0.9532	0.9807	0.0784	4.42	0.0395	14.12	1/982	1/7748
SNV	Breast	NBEAL1_I1098T_10	HLA-B44:03	EEIQSIMGYT	0.8874	0.9166	1.475	76.3	0.2633	3.79	1/982	1/7748
SNV	Breast	NUAK1_T461M_9	HLA-C16:01	KLSPKQSAM	0.9404	0.9761	0.6897	63.24	0.3317	9.45	1/982	1/7748
SNV	Breast	PCDHB16_S746F_3	HLA-A02:01	TLFQSYQYEV	0.9962	0.7056	0.354	243.35	0.5387	4.47	1/982	2/7748
SNV	Breast	TOP1MT_T405P_6	HLA-C04:01	LFDRLPTTSL	0.9998	0.9372	0.0633	42.32	0.0525	7.09	1/982	1/7748
SNV	Breast	TRPS1_P867T_8	HLA-B44:03	GEKSGALTQQY	0.9989	0.9185	0.1331	82.43	0.2691	52.37	1/982	1/7748
SNV	Breast	YLPM1_P543T_1	HLA-B35:03	TPPVMPPAL	0.9682	0.8948	0.0589	20.85	0.0518	12.36	1/982	1/7748
SNV	Breast	ZFAT_D154G_6	HLA-C16:01	AGNESGLEL	0.603	0.9834	0.9501	74.49	0.365	17.29	1/982	2/7748
SNV	Breast	ATAD5_L1662F_5	HLA-A02:01	FLDAFLTDV	0.9967	0.8643	0.0211	1.84	0.0405	5.32	1/982	1/7748
SNV	Breast	ATAD5_L1662F_5	HLA-C05:01	FLDAFLTDV	0.9992	0.9981	0.0803	3.77	0.0461	5.32	1/982	1/7748
SNV	Breast	GUSB_R357Q_4	HLA-B44:02	ADIQGKGFDW	0.9927	0.7754	0.1356	148.21	0.2967	35.98	1/982	1/7748
SNV	Breast	MAP2K4_P306R_2	HLA-C07:04	FRYPKWNSV	0.9142	0.9429	0.0065	257.18	0.0098	30.2	1/982	1/7748
SNV	Breast	MAPK6_D387Y_9	HLA-A02:01	QLDPRALSYV	0.9778	0.5797	0.8226	421.25	0.6376	38.49	1/982	1/7748
SNV	Breast	MAPK6_D387Y_9	HLA-C05:01	QLDPRALSY	0.9935	0.9591	0.494	254.37	0.318	38.49	1/982	1/7748
SNV	Breast	MAPK6_D387Y_1	HLA-C05:01	YVTDEEEVQV	0.9996	0.9522	0.9742	68.9	0.192	38.49	1/982	1/7748
SNV	Breast	SERPING1_A145T_1	HLA-A02:01	TLVDFSLKL	0.9972	0.6803	0.0645	1.84	0.0403	398.1	1/982	1/7748
SNV	Breast	SERPING1_A145T_1	HLA-C05:01	TLVDFSLKL	0.9902	0.8693	0.5364	147.45	0.2536	398.1	1/982	1/7748
SNV	Breast	SULF2_G319S_6	HLA-C05:01	YTADHSYHI	0.9985	0.7972	0.2153	3.73	0.0458	227.33	1/982	1/7748
SNV	Breast	USP24_I342V_10	HLA-A02:01	MLDPVILTTV	0.9986	0.7039	0.2395	3.79	0.0786	24.96	1/982	1/7748
SNV	Breast	USP24_I342V_10	HLA-C05:01	MLDPVILTTV	0.9997	0.9915	0.0711	9.09	0.0829	24.96	1/982	1/7748
SNV	Breast	ACRC_S659L_2	HLA-A02:01	KLLDTSRFI	0.9916	0.6275	0.1526	29.32	0.2498	1.41	1/982	1/7748
SNV	Breast	ACRC_S659L_9	HLA-C07:02	TRIGCYTKL	0.799	0.9674	0.0301	114.3	0.208	1.41	1/982	1/7748
SNV	Breast	ADAMTS2_Q1193E_4	HLA-B38:01	TRNERIQEL	0.9988	0.9718	0.1425	302.66	0.1387	54.68	1/982	1/7748
SNV	Breast	ADAMTS2_Q1193E_4	HLA-C07:02	TRNERIQEL	0.973	0.9315	0.0323	4.13	0.015	54.68	1/982	1/7748
SNV	Breast	ADCY4_I924M_2	HLA-C12:03	KMKTIGSTY	0.7441	0.9652	0.786	325.62	0.9069	1.86	1/982	1/7748
SNV	Breast	CC2D1A_D544H_5	HLA-A02:01	GLPVHITKV	0.9799	0.5859	0.2101	11.28	0.1683	41.3	1/982	1/7748
SNV	Breast	CC2D1A_D544H_8	HLA-B38:01	SRNGLPVHI	0.995	0.9026	0.1364	294.7	0.1367	41.3	1/982	1/7748
SNV	Breast	CC2D1A_D544H_8	HLA-C07:02	SRNGLPVHI	0.8471	0.8702	0.1449	38.33	0.1133	41.3	1/982	1/7748
SNV	Breast	CHST7_A215T_6	HLA-B07:02	APRARTEV	0.9998	0.7574	0.2621	37.34	0.1884	3.91	1/982	1/7748
SNV	Breast	CHST7_A215T_6	HLA-B07:02	APRARTEVGL	0.999	0.8264	0.0694	2.14	0.0356	3.91	1/982	1/7748
SNV	Breast	CIT_H169N_6	HLA-B38:01	FQDKNNLYL	0.7763	0.9533	0.0752	40.88	0.0392	4.29	1/982	1/7748
SNV	Breast	CIT_H169N_6	HLA-C07:02	FQDKNNLYL	0.8732	0.9379	0.1481	454.1	0.3832	4.29	1/982	1/7748
SNV	Breast	CIT_H169N_8	HLA-C12:03	YAFQDKNNL	0.9971	0.9904	0.0761	3.35	0.0321	4.29	1/982	1/7748
SNV	Breast	CIT_H169N_6	HLA-C12:03	FQDKNNLYL	0.8623	0.9878	0.9184	484.7	1.0622	4.29	1/982	1/7748
SNV	Breast	CIT_H169N_8	HLA-C12:03	YAFQDKNNLY	0.9825	0.9859	0.2391	27.01	0.2562	4.29	1/982	1/7748
SNV	Breast	FAM13A_R619W_5	HLA-C12:03	MLSPWFYAY	0.7557	0.9924	0.825	154.5	0.6456	3.47	1/982	2/7748
SNV	Breast	HSPA1L_E578Q_7	HLA-A02:01	ILDKCNQLL	0.9784	0.675	0.3795	92.65	0.3817	3.43	1/982	1/7748
SNV	Breast	HSPH1_P427S_2	HLA-C07:02	ASFSKVLTF	0.9966	0.9361	0.2737	70.81	0.1629	173.16	1/982	1/7748
SNV	Breast	HSPH1_P427S_8	HLA-C12:03	FSRNHAASF	0.9542	0.9542	0.0196	2.67	0.0233	173.16	1/982	1/7748
SNV	Breast	HSPH1_P427S_4	HLA-C12:03	HAASFSKVL	0.9958	0.9795	0.0726	7.33	0.0932	173.16	1/982	1/7748
SNV	Breast	HSPH1_P427S_2	HLA-C12:03	ASFSKVLTF	0.9906	0.9818	0.0351	2.81	0.0256	173.16	1/982	1/7748
SNV	Breast	HSPH1_P427S_3	HLA-C12:03	AASFSKVLTF	0.9993	0.9807	0.786	395.43	0.9802	173.16	1/982	1/7748
SNV	Breast	ITGB3BP_N106I_2	HLA-C12:03	QILSSIQAL	0.9781	0.971	0.825	214.97	0.7603	7.65	1/982	1/7748
SNV	Breast	LUM_E240K_8	HLA-C12:03	YLRLSHNKL	0.7694	0.9896	1.7088	280.44	0.8552	1208.68	1/982	2/7748
SNV	Breast	SUGP1_D405Y_1	HLA-C12:03	YVDASPSPL	0.9784	0.9766	0.5679	25.63	0.2469	13.19	1/982	1/7748
SNV	Breast	TUBB6_R391H_3	HLA-C07:02	FRHKAFLHW	0.7624	0.9847	0.2126	354.14	0.3465	30.7	1/982	1/7748
SNV	Breast	TUBB6_R391H_6	HLA-C12:03	SAMFRHKAF	0.555	0.9854	0.2004	10.13	0.1245	30.7	1/982	1/7748
SNV	Breast	ZNF423_V1104M_9	HLA-C12:03	MARSANGQM	0.8298	0.9859	0.0979	66.44	0.4238	1.63	1/982	1/7748
SNV	Breast	ZNF423_V1104M_6	HLA-C12:03	SANGQMGGL	0.7491	0.9802	0.7113	192.75	0.7189	1.63	1/982	1/7748
SNV	Breast	ADCK5_I242L_6	HLA-A24:02	RFDGDLHTL	0.9681	0.5536	0.2379	37.69	0.3359	12.32	1/982	1/7748
SNV	Breast	ADCK5_I242L_7	HLA-B27:05	DRFDGDLHTL	0.9994	0.9196	0.4655	121.58	0.4292	12.32	1/982	1/7748
SNV	Breast	ADCK5_I242L_6	HLA-C04:01	RFDGDLHTL	0.9998	0.8337	0.0004	3.18	0.0083	12.32	1/982	1/7748
SNV	Breast	ELL2_M186V_3	HLA-B35:02	TPVNPANTI	0.9645	0.9885	0.0623	18.2	0.0419	48.66	1/982	1/7748
SNV	Breast	KXD1_I162F_9	HLA-C02:02	HVQPGSPAF	0.6792	0.9886	0.0424	57.87	0.1168	43.76	1/982	1/7748
SNV	Breast	MTOR_W2101L_2	HLA-C04:01	ALDLYYHVF	0.9994	0.6787	0.1595	121.53	0.0786	21.22	1/982	1/7748
SNV	Breast	RAD51C_D318E_8	HLA-B27:05	IRLIFHWER	0.9994	0.6778	0.5088	67.34	0.3651	8.83	1/982	1/7748
SNV	Breast	SBNO1_F1071Y_1	HLA-C04:01	YFKDVRQGL	0.5025	0.8187	0.2106	430.17	0.1437	33.62	1/982	1/7748
SNV	Breast	SNAPC1_S145L_9	HLA-C02:02	FTAMPKLLL	0.9726	0.9582	0.0916	80.44	0.1401	7.95	1/982	1/7748
SNV	Breast	SNAPC1_S145L_9	HLA-C02:02	FTAMPKLLLY	0.9606	0.9548	0.821	214.79	0.2777	7.95	1/982	1/7748
SNV	Breast	ADAMTS13_R660W_8	HLA-B44:02	ADIQVYRW	0.9979	0.6499	0.5481	423.48	0.3858	3.49	1/982	1/7748
SNV	Breast	ADAMTS13_R660W_10	HLA-B44:02	EDADIQVYRW	0.9976	0.7429	0.5871	32.53	0.1822	3.49	1/982	1/7748
SNV	Breast	ADAMTS13_R660W_11	HLA-B44:02	QEDADIQVYRW	0.9999	0.9402	0.0729	10.01	0.1114	3.49	1/982	1/7748
SNV	Breast	ANKLE2_R397C_7	HLA-A02:01	MLQKRICYV	0.9897	0.579	0.079	409.6	0.6315	18.91	1/982	1/7748
SNV	Breast	AOC3_R566W_7	HLA-C07:02	QRLQVTWKL	0.9895	0.9555	0.0926	64.36	0.155	8.98	1/982	1/7748
SNV	Breast	ATP7B_P610L_7	HLA-A02:01	ALVKFDLEI	0.9874	0.6303	0.3076	8.95	0.1498	32.1	1/982	1/7748
SNV	Breast	CEP85L_V294I_7	HLA-B07:02	VPIQPSIRTQM	0.9996	0.6002	0.2446	20.73	0.1572	1.06	1/982	1/7748
SNV	Breast	DNAJC7_R402Q_4	HLA-C07:02	KAYQKRALM	0.9751	0.9452	0.9331	394.08	0.3623	35.81	1/982	1/7748
SNV	Breast	EIF4E2_A169V_9	HLA-A02:01	MVGEEICGV	0.9698	0.5418	0.3222	457.99	0.6561	33.13	1/982	1/7748
SNV	Breast	EIF4E2_A169V_10	HLA-A02:01	FMVGEEICGV	0.9982	0.5003	0.0731	88.51	0.3758	33.13	1/982	1/7748
SNV	Breast	EXOC2_E453K_7	HLA-C07:02	HRVAFVKKL	0.8873	0.8143	0.0262	23.13	0.0835	32.51	1/982	1/7748
SNV	Breast	FLOT2_V28M_2	HLA-A02:01	YMFGGWAWA	0.9928	0.8363	0.0211	7.04	0.1297	102.79	1/982	1/7748
SNV	Breast	FLOT2_V28M_8	HLA-C05:01	GSDYKQYMF	0.9997	0.9349	0.641	67.86	0.1909	102.79	1/982	1/7748
SNV	Breast	GMPS_A595P_6	HLA-C05:01	QADFEPHNI	0.9999	0.955	0.0803	117.37	0.234	30.01	1/982	1/7748
SNV	Breast	HSD17B4_K331E_8	HLA-C05:01	FAGAIGQEL	0.999	0.9813	0.1469	187.82	0.2814	71.28	1/982	1/7748
SNV	Breast	KCNK1_V160I_3	HLA-C07:02	VHITRRPVL	0.7085	0.7607	0.6807	420.47	0.3719	70.94	1/982	1/7748
SNV	Breast	LSM11_R303W_11	HLA-B44:02	SRSELSGRTTW	0.9869	0.5795	1.2056	2.32	0.0436	8.2	1/982	1/7748
SNV	Breast	MKNK2_E23K_6	HLA-C07:02	GQNPFKLAF	0.9382	0.9313	0.0606	298.63	0.3214	110.14	1/982	1/7748
SNV	Breast	PCDHA4_V712M_4	HLA-A02:01	SLLMLTLLL	0.9132	0.6563	0.3914	359.82	0.6029	1.11	1/982	1/7748
SNV	Breast	PLXNA2_T950A_2	HLA-C07:02	YAFVNPSVL	0.9586	0.9126	0.4923	73.99	0.1665	5.61	1/982	1/7748
SNV	Breast	PPP2R3C_P202H_7	HLA-C07:02	YILELIHTL	0.7519	0.9165	0.5694	47.78	0.1287	16.68	1/982	1/7748
SNV	Breast	PPP2R3C_P202H_7	HLA-C05:01	YILELIHTL	0.9433	0.9117	0.4885	23.4	0.1305	16.68	1/982	1/7748
SNV	Breast	RAD50_V687F_2	HLA-C07:02	RFFQTEAEL	0.6676	0.9889	0.1884	149.6	0.237	41.89	1/982	1/7748
SNV	Breast	SDK1_R1191Q_6	HLA-B44:02	SETSLQLRW	0.9997	0.6986	0.0019	1.08	0.0025	1.78	1/982	1/7748
SNV	Breast	SDK1_R1191Q_6	HLA-B44:02	SETSLQLRWV	0.9245	0.7781	0.6731	119.01	0.2782	1.78	1/982	1/7748
SNV	Breast	SFMBT2_R617W_9	HLA-C07:02	YRAVVKIVW	0.836	0.8957	1.1367	271.55	0.3073	5.02	1/982	1/7748
SNV	Breast	SYNE3_R741M_3	HLA-A02:01	ALMLLEESL	0.972	0.5121	0.5055	33.43	0.2626	1.46	1/982	1/7748
SNV	Breast	TLR7_T801M_2	HLA-C05:01	HMEVTIPYL	0.9997	0.9435	0.2674	79.04	0.2018	12.98	1/982	1/7748
SNV	Breast	TNS1_S1381R_5	HLA-C07:02	FRQGRPTPAL	0.992	0.9691	0.3008	278.6	0.3111	25.51	1/982	1/7748
SNV	Breast	TOX3_R147W_2	HLA-C07:02	YWQDPSLIM	0.7253	0.9812	0.1356	60.75	0.1503	12.41	1/982	1/7748
SNV	Breast	TRIM56_G512R_6	HLA-B07:02	SPRITRLCPF	0.9986	0.7891	0.1032	76.29	0.2417	30.5	1/982	1/7748
SNV	Breast	TRIM56_G512R_8	HLA-C07:02	KRSPRITRL	0.9333	0.9677	0.024	5.74	0.0259	30.5	1/982	1/7748
SNV	Breast	UBTD2_P189S_6	HLA-B44:02	AEGVESGSQRW	0.9999	0.7657	0.0089	2.01	0.0369	74.27	1/982	1/7748
SNV	Breast	XPC_L112P_3	HLA-C07:02	HHPKRGATM	0.5924	0.883	0.34	365.24	0.3511	40.2	1/982	1/7748
SNV	Breast	YTHDC2_S1281L_1	HLA-B07:02	LPRPNMPV	0.9996	0.5942	0.396	244.39	0.3389	12.71	1/982	1/7748
SNV	Breast	YTHDC2_S1281L_3	HLA-B07:02	SPLPRPNMPV	0.9974	0.7026	0.1335	155.77	0.2993	12.71	1/982	1/7748
SNV	Breast	ZNF512_T381A_2	HLA-C07:02	YARPGLPTF	0.9641	0.9472	0.1136	25.03	0.088	21.15	1/982	1/7748
SNV	Breast	ZNF512_T381A_3	HLA-C07:02	KYARPGLPTF	0.9766	0.9303	0.4496	329	0.3357	21.15	1/982	1/7748
SNV	Breast	DYNC1H1_R379H_8	HLA-C12:03	YPIQRALHL	0.6074	0.9628	0.7258	54.15	0.3822	80.54	1/982	2/7748
SNV	Breast	DYNC1H1_R379H_4	HLA-C12:03	RALHLVEAI	0.9036	0.9819	0.1004	115.79	0.5614	80.54	1/982	2/7748
SNV	Breast	RARA_F286S_3	HLA-C12:03	MTSSDGLTL	0.949	0.9913	0.1274	39.15	0.3257	80.82	1/982	1/7748
SNV	Breast	SHISA4_A90T_6	HLA-C12:03	TIAGITSAV	0.9961	0.9851	1.3381	96.43	0.5125	20.36	1/982	1/7748
SNV	Breast	SPATA17_R254H_7	HLA-B18:01	TEVLEQHY	0.9964	0.8459	0.0679	229.02	0.2076	1.18	1/982	1/7748
SNV	Breast	APBB1IP_Y341N_4	HLA-A11:01	GIYNVPKGK	0.9987	0.5169	0.354	26.14	0.1628	13.82	1/982	1/7748
SNV	Breast	APBB1IP_Y341N_8	HLA-B27:05	LRASGIYNV	0.9994	0.9823	0.3465	23.83	0.2627	13.82	1/982	1/7748
SNV	Breast	DUSP16_P210L_4	HLA-B27:05	LRVLVNDSF	0.9989	0.8958	0.2193	7.07	0.1668	41.39	1/982	1/7748
SNV	Breast	FAM8A1_K374Q_2	HLA-C12:02	IQNFSIASF	0.9547	0.9527	1.2834	225.07	0.3056	16.08	1/982	1/7748
SNV	Breast	ILF2_P242L_10	HLA-A24:02	RFPGFEPLTL	0.9972	0.6096	0.2175	16.49	0.2578	557.85	1/982	1/7748
SNV	Breast	ILF2_P242L_10	HLA-A24:02	RFPGFEPLTLW	0.9996	0.8703	0.4542	10.4	0.2195	557.85	1/982	1/7748
SNV	Breast	ILF2_P242L_11	HLA-B27:05	IRFPGFEPLTL	1	0.743	0.0047	3.07	0.098	557.85	1/982	1/7748
SNV	Breast	TMCO6_E107G_4	HLA-B27:05	IRLGGSMRTL	0.9999	0.5681	0.3224	10.92	0.2025	10.06	1/982	1/7748
SNV	Breast	TYRO3_P813L_1	HLA-C12:02	LTAGGSLEL	0.995	0.983	0.0727	183.22	0.2631	12.51	1/982	1/7748
SNV	Breast	MAPK14_V158M_9	HLA-B08:01	DLKPSNLAM	0.9767	0.5047	0.1401	86.35	0.1579	31.52	1/982	1/7748
SNV	Breast	OTUD4_A1009T_6	HLA-A02:01	VVSPGTNSV	0.923	0.5562	0.5089	485.94	0.6692	21.65	1/982	1/7748
SNV	Breast	OTUD4_A1009T_6	HLA-C02:02	VVSPGTNSV	0.6833	0.9731	0.17	46.74	0.0993	21.65	1/982	1/7748
SNV	Breast	ANKLE1_R637L_9	HLA-C03:03	VAGWPPARL	0.9989	0.9917	0.1883	456.83	0.488	2.32	1/982	1/7748
SNV	Breast	EPB41L5_A92P_8	HLA-A02:01	GLRFMDSPQV	0.8964	0.5713	1.7934	44.85	0.2912	12.17	1/982	1/7748
SNV	Breast	FAM90A1_A411G_6	HLA-B15:01	SSLLTGPSF	0.9195	0.979	0.2485	415.58	0.4869	2.99	1/982	1/7748
SNV	Breast	GDAP1_T307A_5	HLA-A02:01	AVLPAAFRV	0.9793	0.7924	0.363	11.93	0.1728	3.62	2/982	2/7748
SNV	Breast	GDAP1_T307A_7	HLA-B15:01	ISAVLPAAF	0.991	0.8664	0.0993	228.13	0.3885	3.62	2/982	2/7748
SNV	Breast	GDAP1_T307A_7	HLA-C03:03	ISAVLPAAF	0.995	0.9779	0.3719	162.28	0.3327	3.62	2/982	2/7748
SNV	Breast	HPS3_F762Y_10	HLA-B15:01	KIGIEEADSY	0.9875	0.9188	1.046	429.5	0.4925	14.82	1/982	1/7748
SNV	Breast	HUWE1_G2781E_3	HLA-A02:01	ALEEVPQEL	0.9901	0.6353	0.6755	4.53	0.0967	154.86	1/982	1/7748
SNV	Breast	NEDD9_D627Y_3	HLA-A02:01	WMYDYDYVHL	0.9966	0.5118	0.2023	18.75	0.2119	15.03	1/982	1/7748
SNV	Breast	PHOSPHO2_D193G_5	HLA-B15:01	FLKNGDVAM	0.9961	0.7327	0.1845	22.69	0.1504	5.89	1/982	1/7748
SNV	Breast	PHOSPHO2_D193G_5	HLA-C03:03	FLKNGDVAM	0.9356	0.9613	0.3719	37.54	0.1803	5.89	1/982	1/7748
SNV	Breast	RAB14_E167Q_3	HLA-B15:01	FLQAAKKIY	0.9953	0.9148	0.2386	20.15	0.1417	92.78	1/982	1/7748
SNV	Breast	WDFY4_V1805I_5	HLA-B15:01	FLSLIHRTY	0.9888	0.8608	0.0685	55.79	0.2297	2.05	1/982	1/7748
SNV	Breast	ABCC12_S216C_4	HLA-B38:01	THICVGEVL	0.995	0.9625	0.0031	28.78	0.0339	3.25	1/982	1/7748
SNV	Breast	ACE_E989Q_2	HLA-B38:01	HQMGHIQYF	0.8652	0.9355	0.065	37.99	0.0381	5.6	1/982	1/7748
SNV	Breast	ACE_E989Q_3	HLA-B38:01	HHQMGHIQYF	0.9953	0.9349	0.2914	193.07	0.1049	5.6	1/982	1/7748
SNV	Breast	ACE_E989Q_2	HLA-C12:03	HQMGHIQYF	0.9599	0.9767	0.4773	11.27	0.1365	5.6	1/982	1/7748
SNV	Breast	ACSL4_S249L_5	HLA-C12:03	HSMQLVEEL	0.9951	0.9661	0.0775	31.21	0.2846	20.4	1/982	1/7748
SNV	Breast	ADIPOR2_Q273K_5	HLA-C12:03	FATPKYRGV	0.8488	0.9782	0.1004	57.08	0.3913	49.73	1/982	1/7748
SNV	Breast	AHCYL2_E549Q_7	HLA-C12:03	QALALIQLY	0.5005	0.9439	0.327	225.42	0.7783	15.33	1/982	1/7748
SNV	Breast	ALG1_Q84H_5	HLA-B08:01	NNRIHIVGL	0.9924	0.7261	0.3955	66.42	0.1381	20.05	1/982	1/7748
SNV	Breast	ALG1_Q84H_2	HLA-B38:01	IHIVGLTEL	0.999	0.9634	0.0046	41.94	0.0396	20.05	1/982	1/7748
SNV	Breast	ANKRD17_R451T_7	HLA-B38:01	GHVEVATLL	0.9963	0.9643	0.0119	6.06	0.0086	56.1	1/982	1/7748
SNV	Breast	ANKRD17_R451T_7	HLA-B38:01	GHVEVATLLL	0.9969	0.9512	0.1969	428.27	0.1653	56.1	1/982	1/7748
SNV	Breast	ANKRD40_S222F_1	HLA-C12:03	FVPSKPPMSL	0.9998	0.9698	0.6452	394.68	0.9795	74.69	1/982	1/7748
SNV	Breast	ANO6_R638T_8	HLA-B08:01	NLIGRFHTV	0.9946	0.8173	0.0243	5.71	0.0249	67.54	1/982	1/7748
SNV	Breast	APC_R216Q_1	HLA-C07:01	QRIARIQQI	0.9985	0.7359	0.102	25.8	0.0442	15.89	1/982	1/7748
SNV	Breast	APC_R216Q_4	HLA-C12:03	RAQQRIARI	0.6703	0.9849	0.817	245.66	0.8099	15.89	1/982	1/7748
SNV	Breast	ARFGEF2_E273K_3	HLA-B08:01	PRKRGSSL	0.9836	0.559	1.6615	410.3	0.3071	65.25	1/982	1/7748
SNV	Breast	ARFGEF2_E273K_4	HLA-B08:01	APRKRGSSL	0.9963	0.5967	0.0314	3.14	0.0098	65.25	1/982	1/7748
SNV	Breast	ARFGEF2_E273K_5	HLA-B08:01	DAPRKRGSSL	0.9885	0.6892	0.9714	40.06	0.1017	65.25	1/982	1/7748
SNV	Breast	ARL10_E145K_3	HLA-C12:03	VSKVDVLVF	0.9329	0.9423	0.5679	347.27	0.9312	3.39	1/982	1/7748
SNV	Breast	ARX_E360Q_7	HLA-B08:01	DVFTREQL	0.9967	0.6195	0.3132	236.6	0.2475	3.06	1/982	1/7748
SNV	Breast	ARX_E360Q_4	HLA-B38:01	TREQLAMRL	0.9947	0.9528	0.3844	255.69	0.126	3.06	1/982	1/7748
SNV	Breast	ARX_E360Q_4	HLA-C07:01	TREQLAMRL	0.9834	0.7204	0.2706	191.31	0.1142	3.06	1/982	1/7748
SNV	Breast	ATF3_P21R_7	HLA-C12:03	SASAIVRCL	0.9929	0.9865	0.0961	144.92	0.6253	30.24	1/982	1/7748
SNV	Breast	ATG16L1_E94Q_7	HLA-C07:01	LRIKHQQEL	0.9946	0.8311	0.0158	16.23	0.0326	37.86	1/982	1/7748
SNV	Breast	ATG16L1_S269L_9	HLA-C07:01	SRAATKRLL	0.9964	0.7184	0.102	95.43	0.0853	37.86	1/982	1/7748
SNV	Breast	AURKC_R61W_3	HLA-C12:03	LAWLKESHF	0.9498	0.9903	0.3124	486.89	1.0641	1.87	1/982	1/7748
SNV	Breast	BBX_D582N_3	HLA-B38:01	MENALPPSL	0.8552	0.9386	0.1693	188.91	0.1032	28.13	1/982	1/7748
SNV	Breast	BICC1_D379N_7	HLA-C12:03	QLMEQLNVF	0.9523	0.944	0.6735	365.64	0.9506	15.77	1/982	1/7748
SNV	Breast	BMS1_D187H_7	HLA-C12:03	GVLTHLHSF	0.5523	0.988	0.8912	197.77	0.7286	29.73	1/982	1/7748
SNV	Breast	BMS1_D187H_1	HLA-C12:03	HSFKHNKQL	0.7866	0.9763	0.0216	14.14	0.1663	29.73	1/982	1/7748
SNV	Breast	BPTF_E251K_7	HLA-C12:03	NVIAIYKVL	0.7951	0.981	1.2611	183.54	0.7002	43.37	1/982	1/7748
SNV	Breast	BPTF_E251K_4	HLA-C12:03	AIYKVLRNF	0.829	0.9825	1.3253	107.33	0.5411	43.37	1/982	1/7748
SNV	Breast	BRCA2_E2175Q_4	HLA-C12:03	SLVQNIHVL	0.9621	0.939	0.3591	94.98	0.5084	4.14	1/982	2/7748
SNV	Breast	BRWD1_F1812L_9	HLA-C12:03	NTFHKNASL	0.9807	0.9699	0.0836	51.65	0.3739	20.77	1/982	1/7748
SNV	Breast	BRWD1_F1812L_2	HLA-C12:03	SLFKKTKIL	0.7856	0.9666	0.963	336.24	0.919	20.77	1/982	1/7748
SNV	Breast	BST1_F255L_7	HLA-C12:03	RLKDMGLQY	0.7208	0.9866	0.8094	129.65	0.5916	6.39	1/982	1/7748
SNV	Breast	BTRC_E194Q_4	HLA-C12:03	HIAQNILSY	0.5993	0.9646	0.252	16.82	0.1879	27.25	1/982	1/7748
SNV	Breast	BTRC_E194Q_3	HLA-C12:03	IAQNILSYL	0.996	0.9661	0.0818	10.88	0.1325	27.25	1/982	1/7748
SNV	Breast	C7orf31_S574W_3	HLA-B38:01	EHWGMKHQF	0.9747	0.9778	0.0206	8.7	0.0108	1.23	1/982	1/7748
SNV	Breast	CABLES1_F478S_6	HLA-C07:01	KRVLISPSY	0.9957	0.52	0.0876	337.04	0.1466	17.39	1/982	1/7748
SNV	Breast	CABLES1_F478S_5	HLA-C12:03	RVLISPSYM	0.5238	0.9751	1.5676	29.38	0.2727	17.39	1/982	1/7748
SNV	Breast	CABLES1_F478S_2	HLA-C12:03	ISPSYMTTV	0.941	0.9881	0.433	136.33	0.606	17.39	1/982	1/7748
SNV	Breast	CALM2_F13L_2	HLA-B08:01	ELKEAFSL	0.9988	0.7483	0.307	25.43	0.074	321.71	1/982	1/7748
SNV	Breast	CARM1_L520F_5	HLA-C12:03	TAYDFSSVI	0.9872	0.9244	0.0396	2.63	0.0226	40.57	1/982	1/7748
SNV	Breast	CCDC88C_E386K_5	HLA-B08:01	ELEKKNLQL	0.9598	0.687	0.1181	472.97	0.3262	7.55	1/982	1/7748
SNV	Breast	CCDC88C_S1584L_9	HLA-C07:01	SRNTSSNSL	0.9952	0.6058	0.1144	81.19	0.0793	7.55	1/982	1/7748
SNV	Breast	CCDC88C_S1584L_5	HLA-C12:03	SSNSLPLNL	0.9131	0.9818	0.283	47.08	0.3578	7.55	1/982	1/7748
SNV	Breast	CCR4_L201F_6	HLA-C12:03	TTWKVFSSL	0.9648	0.9858	0.2609	118.56	0.5677	13.37	1/982	1/7748
SNV	Breast	CCR4_L201F_1	HLA-C12:03	FSSLEINIL	0.9669	0.979	0.2699	327.78	0.9094	13.37	1/982	1/7748
SNV	Breast	CDK11B_D55N_4	HLA-B08:01	ELRNHRMEI	0.9981	0.7089	0.0686	14.29	0.0524	30.5	1/982	1/7748
SNV	Breast	CELF2_E98Q_4	HLA-C12:03	AALQAQNAL	0.9514	0.9948	0.1472	24.86	0.2423	15.9	1/982	1/7748
SNV	Breast	CENPE_E1420Q_5	HLA-B08:01	LLRIQIEML	0.9747	0.6222	0.2209	493.34	0.3318	5.5	1/982	1/7748
SNV	Breast	CEP350_Q929H_5	HLA-B08:01	MIRPHSAI	0.999	0.7516	0.552	28.47	0.0795	30.26	1/982	1/7748
SNV	Breast	CHRDL1_E345Q_7	HLA-C12:03	ETMPVYQSV	0.7255	0.9784	0.8772	160.58	0.6578	32.68	1/982	1/7748
SNV	Breast	CMYA5_S2056L_9	HLA-C12:03	FQKPVSGLL	0.9978	0.9938	0.4894	103.73	0.532	25.65	1/982	1/7748
SNV	Breast	CSF3R_T799S_8	HLA-C12:03	FQASPLGSL	0.9981	0.9932	0.327	36.22	0.3122	7.35	1/982	1/7748
SNV	Breast	CSF3R_T799S_7	HLA-C12:03	QASPLGSLV	0.8884	0.9847	0.1274	358.88	0.9436	7.35	1/982	1/7748
SNV	Breast	DAP3_H35Y_9	HLA-C12:03	QARQSIAAY	0.6194	0.9638	0.2183	34.75	0.305	116.59	1/982	1/7748
SNV	Breast	DEDD_K104N_3	HLA-B08:01	TLNRRRAV	0.9983	0.7521	0.5911	106.04	0.1728	56.7	1/982	1/7748
SNV	Breast	DMXL2_L1800F_1	HLA-C12:03	FAYWVMKDY	0.5033	0.9784	0.222	58.94	0.3969	10.78	1/982	1/7748
SNV	Breast	DNAJC16_E472Q_2	HLA-B38:01	SQSDKFILL	0.8343	0.8716	0.0369	235.39	0.1197	18.39	1/982	1/7748
SNV	Breast	DNAJC16_E472Q_2	HLA-C12:03	SQSDKFILL	0.9805	0.9827	0.8505	281.1	0.856	18.39	1/982	1/7748
SNV	Breast	DNAJC16_L398F_1	HLA-C12:03	FSKPFEAFL	0.9958	0.9909	0.0208	44.08	0.3464	18.39	1/982	1/7748
SNV	Breast	DOCK1_F1080L_9	HLA-B08:01	NLGQHKIKL	0.9584	0.5154	0.2662	182.96	0.2252	98.29	1/982	1/7748
SNV	Breast	DPP8_E246K_4	HLA-C07:01	TREKRRLTY	0.9592	0.6523	0.2459	280.47	0.1323	22.66	1/982	1/7748
SNV	Breast	DST_E4263Q_8	HLA-B08:01	TVKQQIEQL	0.8169	0.8362	0.1289	410.73	0.3073	12.3	1/982	1/7748
SNV	Breast	DST_E4263Q_8	HLA-C12:03	TVKQQIEQL	0.9672	0.983	0.4773	282.64	0.8579	12.3	1/982	1/7748
SNV	Breast	EDRF1_H142Y_1	HLA-C12:03	YVSMAVHRI	0.936	0.9625	1.3575	55.24	0.3856	9.17	1/982	1/7748
SNV	Breast	EIF4E2_R202Q_7	HLA-B38:01	IRDTLRQVL	0.9951	0.8725	0.1123	149.17	0.0886	44.79	1/982	1/7748
SNV	Breast	EIF4E2_R202Q_7	HLA-C07:01	IRDTLRQVL	0.995	0.6839	0.1251	77.01	0.0779	44.79	1/982	1/7748
SNV	Breast	EIF4E2_R202Q_8	HLA-C12:03	RIRDTLRQV	0.9526	0.9735	1.1661	243.04	0.8063	44.79	1/982	1/7748
SNV	Breast	EPRS_S814F_3	HLA-C12:03	ISFNSSASI	0.9863	0.9756	0.1896	12.05	0.144	226.9	1/982	1/7748
SNV	Breast	ERBB2_I767M_8	HLA-B08:01	SPKANKEML	0.9126	0.5056	0.2014	320.86	0.2794	364.91	1/982	2/7748
SNV	Breast	ERLIN1_E186Q_7	HLA-B08:01	AIRRNFQL	0.9946	0.5271	0.4094	188.86	0.228	39.17	1/982	1/7748
SNV	Breast	ERLIN1_E186Q_8	HLA-B08:01	EAIRRNFQL	0.9977	0.5503	0.0814	24.38	0.072	39.17	1/982	1/7748
SNV	Breast	ETV5_D6H_7	HLA-B38:01	YHQQVPFMV	0.9965	0.9854	0.0246	19.13	0.0264	9.43	1/982	1/7748
SNV	Breast	ETV5_D6H_8	HLA-C07:01	FYHQQVPFM	0.647	0.6323	0.414	242.8	0.1231	9.43	1/982	1/7748
SNV	Breast	ETV5_D6H_8	HLA-C12:03	FYHQQVPFM	0.5386	0.9808	1.2835	380.69	0.9659	9.43	1/982	1/7748
SNV	Breast	FAM13A_E804Q_4	HLA-B08:01	IANQKVAL	0.9998	0.6224	0.1575	6.71	0.0291	4.52	1/982	1/7748
SNV	Breast	FBXW2_D391N_3	HLA-B08:01	IMNLRTESL	0.9974	0.9511	0.004	6.86	0.0296	54.59	1/982	1/7748
SNV	Breast	FBXW2_D391N_8	HLA-B38:01	NRYLYIMNL	0.9844	0.7423	0.171	52.83	0.0473	54.59	1/982	1/7748
SNV	Breast	FBXW2_D391N_3	HLA-C12:03	IMNLRTESL	0.999	0.9934	1.3825	358.2	0.9429	54.59	1/982	1/7748
SNV	Breast	FCGR2B_F165L_8	HLA-B08:01	KPLVKVTL	0.9993	0.576	0.1088	23.67	0.0705	7.14	1/982	1/7748
SNV	Breast	FCGR2B_F165L_8	HLA-B08:01	KPLVKVTLF	0.876	0.6098	0.2835	399.68	0.3036	7.14	1/982	1/7748
SNV	Breast	FCGR2C_F164L_8	HLA-B08:01	KPLVKVTL	0.9993	0.576	0.1088	23.67	0.0705	3.88	1/982	1/7748
SNV	Breast	FCGR2C_F164L_8	HLA-B08:01	KPLVKVTLF	0.876	0.6098	0.2835	399.68	0.3036	3.88	1/982	1/7748
SNV	Breast	FREM2_E1274K_2	HLA-B38:01	QKDSFVIKL	0.9962	0.6696	0.4904	400.86	0.1602	3.02	1/982	1/7748
SNV	Breast	GFOD2_D149N_1	HLA-C12:03	NARIYSGSL	0.9254	0.9702	0.6735	461.72	1.0422	7.72	1/982	1/7748
SNV	Breast	GNA12_S255N_3	HLA-C12:03	SSNEYDQVL	0.6489	0.9115	0.3746	145.11	0.6257	47.87	1/982	1/7748
SNV	Breast	GTPBP3_E193D_3	HLA-C12:03	WADTLTKAL	0.7666	0.9798	0.5343	390.35	0.9753	16.34	1/982	1/7748
SNV	Breast	HDLBP_E828K_7	HLA-C12:03	VLREIAKEY	0.742	0.9692	0.77	415.01	0.9984	345.66	1/982	1/7748
SNV	Breast	HDLBP_E828K_3	HLA-C12:03	IAKEYGGVM	0.9728	0.9621	0.105	10.98	0.1336	345.66	1/982	1/7748
SNV	Breast	HERC2_E357K_3	HLA-C12:03	HSKGDMHLL	0.9062	0.9499	0.3124	237.81	0.7987	20.9	1/982	1/7748
SNV	Breast	HEXDC_I69M_2	HLA-B08:01	EMKEILHL	0.9972	0.6711	0.7289	223.26	0.2424	13.83	1/982	1/7748
SNV	Breast	HEXDC_I69M_8	HLA-C12:03	YAYSPSEM	0.9996	0.9798	0.1747	7.79	0.0981	13.83	1/982	1/7748
SNV	Breast	HIST3H2BB_E72K_7	HLA-C12:03	FVNDIFKRI	0.9419	0.9763	0.4729	17.48	0.1922	3.46	1/982	1/7748
SNV	Breast	HTT_E1766K_3	HLA-C12:03	MSKQQHTFY	0.6058	0.8949	0.273	296.51	0.8743	35.22	1/982	1/7748
SNV	Breast	IDI1_R109Q_3	HLA-B38:01	LHQAFSVFL	0.9971	0.9747	0.0189	474.7	0.1733	52.55	1/982	1/7748
SNV	Breast	IDI1_R109Q_2	HLA-B38:01	HQAFSVFLF	0.7295	0.965	0.3001	203.78	0.1089	52.55	1/982	1/7748
SNV	Breast	IGHV3-13_M101I_6	HLA-C12:03	SLYLQINSL	0.9356	0.9772	0.934	34.22	0.3023	2.14	1/982	1/7748
SNV	Breast	INTS12_P390S_6	HLA-C12:03	VGLPSSSSL	0.9714	0.9864	0.6656	77.88	0.461	21.7	1/982	1/7748
SNV	Breast	IREB2_G561A_4	HLA-C12:03	SSSAVLPYL	0.9678	0.9777	0.1244	111.21	0.5506	26.12	1/982	1/7748
SNV	Breast	IREB2_G561A_1	HLA-C12:03	AVLPYLSKL	0.9418	0.9833	0.323	26.46	0.2521	26.12	1/982	1/7748
SNV	Breast	ITGA2_Q905E_4	HLA-B38:01	LQNEASLSF	0.6399	0.9618	0.3332	331.5	0.1455	26.94	1/982	1/7748
SNV	Breast	ITGA2_Q905E_4	HLA-C12:03	LQNEASLSF	0.9809	0.9865	1.4964	89.07	0.4923	26.94	1/982	1/7748
SNV	Breast	ITPR2_E1773K_5	HLA-C12:03	RIFSKGIFL	0.9688	0.9789	0.6513	11.16	0.1354	40.43	1/982	1/7748
SNV	Breast	ITPR2_E1773K_3	HLA-C12:03	FSKGIFLGI	0.9843	0.9547	0.1064	246.01	0.8104	40.43	1/982	1/7748
SNV	Breast	ITPR2_E1773K_1	HLA-C12:03	KGIFLGIAL	0.9061	0.98	1.4845	191.19	0.7158	40.43	1/982	1/7748
SNV	Breast	JAK3_D519N_7	HLA-B38:01	FHKIPANSL	0.9853	0.9182	0.0244	110.01	0.0748	6.76	1/982	1/7748
SNV	Breast	KCNIP4_R69W_3	HLA-B38:01	RHWPEALEL	0.9984	0.9894	0.0251	8.78	0.0109	1.31	1/982	1/7748
SNV	Breast	KCNIP4_R69W_4	HLA-B38:01	VRHWPEALEL	0.9845	0.9778	0.5704	333.45	0.146	1.31	1/982	1/7748
SNV	Breast	KCNIP4_R69W_3	HLA-B38:01	RHWPEALELL	0.992	0.9879	0.1588	411.89	0.1623	1.31	1/982	1/7748
SNV	Breast	KCNIP4_R69W_5	HLA-C12:03	TVRHWPEAL	0.9298	0.9722	0.5044	52.48	0.3767	1.31	1/982	1/7748
SNV	Breast	KCTD20_E168K_3	HLA-C12:03	IAKGISATV	0.998	0.9801	0.0236	8.86	0.1107	72.39	1/982	1/7748
SNV	Breast	KCTD21_D26N_7	HLA-C12:03	TLTSFPNSM	0.6643	0.9913	0.7398	362.17	0.947	24.65	1/982	1/7748
SNV	Breast	KIAA1109_Q734H_2	HLA-B38:01	SHITLYGPLL	0.9966	0.9567	0.1948	464.03	0.1716	27.23	1/982	1/7748
SNV	Breast	KIAA1109_Q734H_6	HLA-C12:03	LSPDSHITL	0.9969	0.974	0.2039	47.68	0.36	27.23	1/982	1/7748
SNV	Breast	KIAA1549L_P443A_2	HLA-C12:03	AATAPPNGL	0.6538	0.9796	0.278	173.28	0.682	3.72	1/982	1/7748
SNV	Breast	KIF15_E854K_7	HLA-B08:01	NLRLENKKL	0.8909	0.6324	0.1634	474.54	0.3266	6.7	1/982	1/7748
SNV	Breast	KIF15_E854K_6	HLA-C07:01	LRLENKKLL	0.9798	0.5804	0.1431	108.66	0.0904	6.7	1/982	1/7748
SNV	Breast	KLF7_D292H_5	HLA-B08:01	FSRSHHLAL	0.9973	0.5323	0.0014	14.3	0.0524	18.59	1/982	1/7748
SNV	Breast	KLF7_D292H_5	HLA-C12:03	FSRSHHLAL	0.9934	0.9774	0.0044	3.84	0.039	18.59	1/982	1/7748
SNV	Breast	KLF7_D292H_3	HLA-C12:03	RSHHLALHM	0.9142	0.9866	0.0511	100.84	0.5244	18.59	1/982	1/7748
SNV	Breast	KLHL8_G560S_1	HLA-C12:03	SGHNGNAYL	0.6544	0.962	0.7469	427.23	1.0102	10.94	1/982	1/7748
SNV	Breast	KRBA1_G312V_7	HLA-C12:03	RGSGGPVYL	0.6404	0.992	1.0953	206.62	0.7453	7.22	1/982	1/7748
SNV	Breast	LGALS3_H217Y_7	HLA-C12:03	VAVNDAYLL	0.9167	0.9617	0.5118	195.89	0.725	272.77	1/982	1/7748
SNV	Breast	LIN7A_E169D_4	HLA-B38:01	EHHDKAVEL	0.9993	0.9702	0.0121	35.6	0.0371	6.22	1/982	1/7748
SNV	Breast	LIN7A_E169D_3	HLA-B38:01	HHDKAVELL	0.9989	0.9705	0.0064	2.57	0.0045	6.22	1/982	1/7748
SNV	Breast	LIN7A_E169D_4	HLA-B38:01	EHHDKAVELL	0.995	0.9622	0.0609	286.31	0.1345	6.22	1/982	1/7748
SNV	Breast	LRRC27_R102T_5	HLA-C07:01	LRYNTIKAL	0.9971	0.6887	0.0278	8.86	0.0157	5.28	1/982	1/7748
SNV	Breast	LRRC31_I373M_9	HLA-B08:01	LPALKSLVM	0.9943	0.7972	0.071	74.42	0.1469	4.97	1/982	1/7748
SNV	Breast	LYST_E1097K_6	HLA-C12:03	TSQESKTSL	0.987	0.9684	0.3841	393.5	0.9783	6.66	1/982	1/7748
SNV	Breast	MAPKAP1_D188N_6	HLA-B38:01	LHSSQNRLL	0.9878	0.9893	0.0434	352.04	0.1501	53.4	1/982	1/7748
SNV	Breast	MAPKAP1_D188N_4	HLA-C12:03	SSQNRLLPM	0.9974	0.9722	0.1782	387.17	0.9722	53.4	1/982	1/7748
SNV	Breast	MBD6_L178V_9	HLA-C12:03	SVSQAFPTV	0.8936	0.9747	0.6339	53.84	0.3812	38.59	1/982	1/7748
SNV	Breast	MBD6_L178V_2	HLA-C12:03	TVAGPGGLF	0.5997	0.9883	0.5471	129.06	0.5904	38.59	1/982	1/7748
SNV	Breast	MED12_D913Y_8	HLA-B08:01	ELLLKSSYL	0.9918	0.5	0.1088	50.8	0.1181	34.12	1/982	1/7748
SNV	Breast	MED12_E461K_7	HLA-C12:03	RVLHTLKVL	0.835	0.9852	1.051	133.47	0.5993	34.12	1/982	1/7748
SNV	Breast	MGEA5_S146F_4	HLA-C12:03	ITFFNPKEV	0.8926	0.9796	0.1836	32.32	0.2914	121.03	1/982	1/7748
SNV	Breast	MSH3_R938S_8	HLA-C12:03	IVDGIFTSM	0.9567	0.9855	0.3591	8.39	0.105	28.6	1/982	1/7748
SNV	Breast	MST1R_G672S_5	HLA-B38:01	FRVDSTSVL	0.9987	0.8946	0.047	28.56	0.0338	8.8	1/982	1/7748
SNV	Breast	MST1R_G672S_5	HLA-C07:01	FRVDSTSVL	0.9963	0.5347	0.051	6.3	0.0116	8.8	1/982	1/7748
SNV	Breast	NADSYN1_E597K_5	HLA-C12:03	MTYAKLSVY	0.8951	0.9518	0.1244	2.73	0.0244	7.09	1/982	1/7748
SNV	Breast	NAV2_H1855Y_3	HLA-C12:03	SSYSDIEEM	0.9895	0.9793	0.0638	19.64	0.2069	22.68	1/982	1/7748
SNV	Breast	NCOA7_D194N_3	HLA-B08:01	DANLARKAL	0.9216	0.7773	0.4204	115.19	0.1808	10.81	1/982	1/7748
SNV	Breast	NEB_P4862A_6	HLA-C12:03	YVWDTAEIL	0.9936	0.9669	0.1674	15.83	0.1812	17.19	1/982	1/7748
SNV	Breast	NEDD9_S386F_3	HLA-C12:03	STFSKESSL	0.9961	0.9782	0.08	11.98	0.1434	22.13	1/982	1/7748
SNV	Breast	NPIPB5_S353L_7	HLA-C12:03	LTPLPPLAL	0.9956	0.9949	0.1878	101.53	0.5262	1.12	1/982	1/7748
SNV	Breast	NRCAM_R16T_4	HLA-C12:03	SAGTVPLIL	0.8646	0.9704	0.2699	266.49	0.8378	1.88	1/982	1/7748
SNV	Breast	NRCAM_R16T_2	HLA-C12:03	GTVPLILFL	0.7904	0.9553	0.5936	220.93	0.7707	1.88	1/982	1/7748
SNV	Breast	PARP3_E200K_8	HLA-C12:03	ITNIFSKKM	0.5239	0.9769	0.4986	486.81	1.064	41.9	1/982	1/7748
SNV	Breast	PARP3_E200K_1	HLA-C12:03	KMFKNTMAL	0.9782	0.9914	0.1564	7.91	0.0992	41.9	1/982	1/7748
SNV	Breast	PDZD2_D527N_3	HLA-C12:03	NGNPRIRML	0.6514	0.9675	1.5297	440.1	1.0224	3.01	1/982	1/7748
SNV	Breast	PGBD4_L459V_2	HLA-B08:01	HVLHITVL	0.9678	0.6449	1.5371	484.5	0.3294	2.01	1/982	1/7748
SNV	Breast	PGBD4_L459V_3	HLA-B38:01	HHVLHITVL	0.9994	0.9696	0.0009	14.56	0.0177	2.01	1/982	1/7748
SNV	Breast	PHF20_G123A_8	HLA-C12:03	YTVKFYDAV	0.9518	0.9725	0.3591	159.17	0.655	44.17	1/982	1/7748
SNV	Breast	PI4K2B_R242K_10	HLA-A03:01	ALEKVPKVGK	0.9463	0.5476	0.4115	54.41	0.2202	16.75	1/982	1/7748
SNV	Breast	PIGG_R810K_4	HLA-B08:01	LLFKPHNL	0.9952	0.5907	0.8811	178.9	0.2233	22.43	1/982	1/7748
SNV	Breast	PIGG_R810K_5	HLA-B08:01	ALLFKPHNL	0.9195	0.7626	0.0725	78.06	0.1506	22.43	1/982	1/7748
SNV	Breast	PIGS_L195F_9	HLA-C12:03	VQVAQAMSF	0.9491	0.9761	1.986	246.35	0.8109	69.22	1/982	1/7748
SNV	Breast	PIP5K1A_A388V_1	HLA-C07:01	VRNSKGERL	0.9413	0.6439	0.1878	74.83	0.0772	72.54	1/982	1/7748
SNV	Breast	PLCH1_E203Q_5	HLA-C12:03	LTFEQFCVF	0.7842	0.9857	0.181	286.72	0.8628	1.94	1/982	1/7748
SNV	Breast	PNPT1_S280L_6	HLA-C12:03	KLFTPLPEI	0.7924	0.9919	1.1884	381.25	0.9664	23.68	1/982	1/7748
SNV	Breast	PPEF1_K207N_6	HLA-C12:03	FVDRGNNSI	0.622	0.9505	0.909	182.18	0.6979	3.61	1/982	1/7748
SNV	Breast	PRDX4_G262A_7	HLA-C12:03	IIPDPAAKL	0.9968	0.9711	0.3446	70.63	0.4381	147.97	1/982	1/7748
SNV	Breast	PRIM1_Q63H_2	HLA-B38:01	NHSDLEKEM	0.9967	0.9803	0.0318	213.4	0.1124	11.02	1/982	1/7748
SNV	Breast	PRPF40A_E248K_4	HLA-C12:03	AAAKAAAAV	0.9533	0.9933	0.08	30.94	0.2829	58.07	1/982	1/7748
SNV	Breast	PRPF40A_E248K_3	HLA-C12:03	AAKAAAAVV	0.958	0.9932	0.2434	139.68	0.6136	58.07	1/982	1/7748
SNV	Breast	PRPF40A_E248K_1	HLA-C12:03	KAAAAVVAA	0.8604	0.99	1.6035	396.26	0.981	58.07	1/982	1/7748
SNV	Breast	PSMD6_I19M_1	HLA-B08:01	MAQLRFLL	0.9997	0.821	0.1126	147.21	0.2064	27.21	1/982	1/7748
SNV	Breast	PSMD6_I19M_6	HLA-B08:01	NPDLRMAQL	0.9804	0.6763	0.1523	57.49	0.1268	27.21	1/982	1/7748
SNV	Breast	PSMD6_I19M_3	HLA-C07:01	LRMAQLRFL	0.9982	0.6758	0.048	37.43	0.055	27.21	1/982	1/7748
SNV	Breast	PUS7_L151F_6	HLA-C07:01	GRISHFNDL	0.9903	0.7412	0.0949	228.87	0.1209	13.36	1/982	1/7748
SNV	Breast	PUS7_L151F_4	HLA-C12:03	ISHFNDLSI	0.915	0.982	0.3446	461.04	1.0416	13.36	1/982	1/7748
SNV	Breast	RALGAPA1_L996V_9	HLA-C12:03	SASPVHSPV	0.9987	0.9802	0.0376	34.83	0.3054	8.71	1/982	1/7748
SNV	Breast	RBM14_S407L_9	HLA-C12:03	AASYNAQPL	0.9752	0.9836	0.3124	386.16	0.9712	41.41	1/982	1/7748
SNV	Breast	RBM14_S407L_6	HLA-C12:03	YNAQPLASY	0.5823	0.9643	0.3936	104.37	0.5336	41.41	1/982	1/7748
SNV	Breast	RBM47_V295M_6	HLA-B38:01	SREDAMHAM	0.9952	0.9382	0.252	127.72	0.0813	121.43	1/982	1/7748
SNV	Breast	RBM47_V295M_6	HLA-C07:01	SREDAMHAM	0.9054	0.6691	0.112	35.03	0.0526	121.43	1/982	1/7748
SNV	Breast	RFX3_E348K_4	HLA-C12:03	TTFKDIKSL	0.9872	0.9533	0.2183	14.99	0.1751	6.31	1/982	1/7748
SNV	Breast	RYR1_I4817M_1	HLA-C12:03	MAMGVKTL	0.9994	0.9675	0.825	143.17	0.6215	5.19	1/982	1/7748
SNV	Breast	RYR1_I4817M_7	HLA-C12:03	AAHLLDMAM	0.9043	0.9877	0.159	41.52	0.336	5.19	1/982	1/7748
SNV	Breast	SCYL3_E410Q_7	HLA-C12:03	VSLLGPQVV	0.6572	0.9828	0.4241	416.18	0.9995	19.09	1/982	1/7748
SNV	Breast	SEL1L3_H552Y_1	HLA-B38:01	YQISSIVPF	0.8006	0.837	0.1451	229.63	0.1179	8.42	1/982	1/7748
SNV	Breast	SEL1L3_H552Y_7	HLA-C12:03	SSIDGLYQI	0.9301	0.8698	0.1294	11.18	0.1356	8.42	1/982	1/7748
SNV	Breast	SEL1L3_H552Y_1	HLA-C12:03	YQISSIVPF	0.9788	0.9552	0.6284	40.59	0.332	8.42	1/982	1/7748
SNV	Breast	SH3GL2_D32N_5	HLA-C12:03	KLDDNFKEM	0.932	0.9723	0.6656	386.32	0.9714	1.01	1/982	1/7748
SNV	Breast	SLA_R230G_6	HLA-C12:03	FSYGLGESI	0.9958	0.9719	0.0216	4.66	0.0542	9.98	1/982	1/7748
SNV	Breast	SLC16A1_K289N_5	HLA-C12:03	SSYGNSQHY	0.6341	0.8642	0.0201	6.69	0.0843	19.79	1/982	1/7748
SNV	Breast	SLC25A15_R275Q_1	HLA-C12:03	QAFPANGAL	0.9651	0.9746	0.0208	5.63	0.0676	30.53	1/982	1/7748
SNV	Breast	SLC25A15_R275Q_1	HLA-C12:03	QAFPANGALF	0.9957	0.9764	0.1956	293.57	0.8709	30.53	1/982	1/7748
SNV	Breast	SLK_E230K_1	HLA-C12:03	KIEPPHHEL	0.9767	0.9888	0.6452	99.17	0.5199	55.85	1/982	1/7748
SNV	Breast	SMC3_A1148V_9	HLA-C12:03	YLFDEIDQV	0.8731	0.9726	0.5679	27.57	0.2602	70.95	1/982	1/7748
SNV	Breast	SNX16_E157Q_2	HLA-B38:01	KQMFPGFRL	0.8078	0.9935	0.3844	430.56	0.1657	8.71	1/982	1/7748
SNV	Breast	SNX16_E157Q_8	HLA-C12:03	RLNDKLKQM	0.9449	0.969	0.6339	135.43	0.6039	8.71	1/982	1/7748
SNV	Breast	SOGA1_E231K_5	HLA-B08:01	YLKDKIEEL	0.999	0.5653	0.0135	2.99	0.0094	46.7	1/982	1/7748
SNV	Breast	SOGA1_E231K_5	HLA-C12:03	YLKDKIEEL	0.9998	0.9901	0.2361	13.86	0.1632	46.7	1/982	1/7748
SNV	Breast	SPICE1_E733K_3	HLA-C12:03	IAKLNRQSM	0.9877	0.9815	0.2434	29.03	0.2703	8.68	1/982	1/7748
SNV	Breast	SYNE1_K764N_1	HLA-B08:01	NIITKTAHL	0.9922	0.6099	0.0549	18.92	0.0617	6.53	1/982	1/7748
SNV	Breast	TBX5_S432L_9	HLA-B38:01	QHFSAHFTL	0.9989	0.9635	0.0001	3.09	0.0054	3.88	1/982	1/7748
SNV	Breast	TBX5_S432L_5	HLA-B38:01	AHFTLGPLV	0.9971	0.9846	0.0531	337.82	0.147	3.88	1/982	1/7748
SNV	Breast	TBX5_S432L_10	HLA-B38:01	YQHFSAHFTL	0.905	0.8761	0.5766	108.84	0.0744	3.88	1/982	1/7748
SNV	Breast	TCF4_S48L_9	HLA-C12:03	LASGHFTGL	0.9968	0.996	0.0105	16.54	0.186	26.1	1/982	1/7748
SNV	Breast	TJP3_E638Q_2	HLA-B38:01	AQMPDQFEI	0.6577	0.9887	0.2491	216.18	0.1133	66.76	1/982	1/7748
SNV	Breast	TM9SF2_I605M_3	HLA-C12:03	FLMYAVHYF	0.5779	0.9782	1.8123	143.77	0.6228	450.99	1/982	1/7748
SNV	Breast	TMEM214_G355A_2	HLA-C12:03	FAAKPDSTL	0.999	0.9806	0.0191	5.25	0.0632	106.95	1/982	1/7748
SNV	Breast	TRDMT1_S128F_9	HLA-C12:03	NVKGFEVSF	0.8399	0.9589	0.6284	348.65	0.9327	1.53	1/982	1/7748
SNV	Breast	TRDMT1_S128F_3	HLA-C12:03	VSFTRDLLI	0.9063	0.9628	0.6339	294.71	0.8722	1.53	1/982	1/7748
SNV	Breast	TRIM47_Q319H_4	HLA-C12:03	RARHNLSQV	0.7898	0.9763	0.3841	82.07	0.4732	54.79	1/982	1/7748
SNV	Breast	TRMT1_R546Q_4	HLA-C07:01	SRQQGLKRF	0.9933	0.5699	0.1144	371.35	0.1537	22.78	1/982	1/7748
SNV	Breast	TTC37_Y1525H_8	HLA-C12:03	IASTARWHL	0.9406	0.9835	0.1508	247.45	0.8124	56.4	1/982	1/7748
SNV	Breast	UGGT1_E1369Q_8	HLA-C12:03	IVRTDLKQL	0.9386	0.9634	0.9254	371.69	0.9568	50.7	1/982	1/7748
SNV	Breast	ULBP2_L11V_9	HLA-C12:03	AAAATKILV	0.9879	0.9652	0.4729	433.11	1.0158	1.25	1/982	1/7748
SNV	Breast	UPF3A_S112L_9	HLA-C12:03	LSLYPHLYL	0.9079	0.9595	1.2511	248.95	0.8145	19.68	1/982	1/7748
SNV	Breast	USP15_G885V_7	HLA-C12:03	AVSNHYVGM	0.9475	0.9195	1.051	157.04	0.6508	8.59	1/982	1/7748
SNV	Breast	VPS13A_E610K_6	HLA-C07:01	FRPPKKVHL	0.9893	0.6298	0.0096	18.18	0.0355	8.94	1/982	1/7748
SNV	Breast	VPS13D_Q2539E_8	HLA-C12:03	IVDPVQIEM	0.9959	0.9816	0.3176	11.44	0.1382	28.56	1/982	1/7748
SNV	Breast	WASF2_F262L_9	HLA-C12:03	SASSPSPSL	0.9951	0.9864	0.0376	12.95	0.153	152.05	1/982	1/7748
SNV	Breast	WDR61_E52D_1	HLA-B38:01	DRLDLQWSL	0.9983	0.994	0.0423	5.38	0.008	30.4	1/982	1/7748
SNV	Breast	WDR61_E52D_1	HLA-C07:01	DRLDLQWSL	0.9973	0.8675	0.2649	278.85	0.1318	30.4	1/982	1/7748
SNV	Breast	WLS_E128Q_3	HLA-C07:01	IRQNAEVSM	0.9966	0.6611	0.0975	155.87	0.1066	38.85	1/982	1/7748
SNV	Breast	WRN_S708A_7	HLA-C12:03	LTATASASI	0.9261	0.9861	0.7194	414.11	0.9976	12.61	1/982	1/7748
SNV	Breast	XRCC4_E317K_6	HLA-B38:01	EHISAKNMSL	0.9976	0.961	0.0865	186.69	0.1023	9.41	1/982	1/7748
SNV	Breast	XRCC4_E317K_5	HLA-C12:03	HISAKNMSL	0.9956	0.9915	0.6583	96.71	0.5132	9.41	1/982	1/7748
SNV	Breast	ZFAT_I199M_6	HLA-C12:03	GAKKPMISV	0.9736	0.9608	0.4894	157.69	0.6521	4.85	1/982	1/7748
SNV	Breast	ZMYM2_Y605F_9	HLA-C12:03	ATMPDGKLF	0.8504	0.9867	0.5175	57.65	0.3931	26.49	1/982	1/7748
SNV	Breast	ZNF16_R8H_5	HLA-B38:01	RHEEAEMEL	0.9954	0.9817	0.0865	40.56	0.0391	8.07	1/982	1/7748
SNV	Breast	ZNF43_F771L_3	HLA-C12:03	KALNQYSNL	0.966	0.9845	0.7113	80.02	0.4673	1.71	1/982	1/7748
SNV	Breast	ZNF550_R353T_4	HLA-C12:03	KAFTCSSEL	0.9748	0.9822	0.0134	71.1	0.4397	2.06	1/982	1/7748
SNV	Breast	ZNF773_E63K_8	HLA-C12:03	LASSKTHKI	0.8442	0.9824	0.1038	408.8	0.9927	3	1/982	1/7748
SNV	Breast	ZRANB3_R954K_5	HLA-C12:03	NSYLKAKVF	0.683	0.9293	0.5604	39.73	0.3283	4.45	1/982	1/7748
SNV	Breast	ZSWIM6_H674R_2	HLA-C07:01	QRLPAHKFL	0.9975	0.7731	0.0537	86.48	0.0814	9.52	1/982	1/7748
SNV	Breast	ZSWIM6_H674R_3	HLA-C12:03	YQRLPAHKF	0.9343	0.9783	1.2404	103.34	0.531	9.52	1/982	1/7748
SNV	Breast	ABCC9_P252T_7	HLA-C12:03	KAIGKLTIA	0.9956	0.9575	1.405	367.1	0.9521	9.29	1/982	1/7748
SNV	Breast	ABCC9_P252T_7	HLA-C12:03	KAIGKLTIAM	0.9995	0.9645	0.6452	148.62	0.6333	9.29	1/982	1/7748
SNV	Breast	KLB_R504Q_3	HLA-C12:03	IIQENGFSL	0.9965	0.9909	0.4673	40.26	0.3306	4	1/982	1/7748
SNV	Breast	PSMG3_N81K_4	HLA-C12:03	FAKKLVAFV	0.972	0.9851	0.0319	224.18	0.7762	39.39	1/982	1/7748
SNV	Breast	TYRO3_D147Y_10	HLA-B35:01	VPFFTVEPKY	0.9961	0.7038	0.2489	77.43	0.2834	5.44	1/982	2/7748
SNV	Breast	TYRO3_D147Y_1	HLA-B35:01	YLAVPPNAPF	0.96	0.9488	1.5368	495.48	0.4879	5.44	1/982	2/7748
SNV	Breast	TYRO3_D147Y_6	HLA-C12:03	TVEPKYLAV	0.6388	0.9758	1.2404	491.38	1.0678	5.44	1/982	1/7748
SNV	Breast	ZNF425_N41S_2	HLA-C12:03	TSYETLDSL	0.9711	0.9854	0.1004	10.24	0.1257	5.04	1/982	1/7748
SNV	Breast	DENND5B_P328R_1	HLA-A03:01	RILPASLLH	0.9978	0.5912	0.3041	18.01	0.1292	6.2	1/982	1/7748
SNV	Breast	DENND5B_P328R_3	HLA-B08:01	YVRILPASL	0.9763	0.6216	0.0156	16.72	0.0574	6.2	1/982	1/7748
SNV	Breast	DENND5B_P328R_2	HLA-C07:02	VRILPASLL	0.8884	0.9607	0.1399	20.41	0.0776	6.2	1/982	1/7748
SNV	Breast	DENND5B_P328R_2	HLA-C07:01	VRILPASLL	0.9975	0.7311	0.0975	26.12	0.0445	6.2	1/982	1/7748
SNV	Breast	NPAS1_P121S_1	HLA-B08:01	SGRRGPAAL	0.9856	0.6921	0.2186	146.55	0.206	2.93	1/982	1/7748
SNV	Breast	TMPRSS6_A309V_8	HLA-C12:02	LASGAIMVV	0.8035	0.9874	0.0761	261.65	0.3362	1.87	1/982	1/7748
SNV	Breast	AGRN_E1473V_6	HLA-C03:04	LSVDGVTPV	0.9906	0.9668	0.0424	39.96	0.1848	134.33	1/982	1/7748
SNV	Breast	AGRN_E1473V_5	HLA-C03:04	SVDGVTPVL	0.9992	0.9893	0.0691	5.52	0.0537	134.33	1/982	1/7748
SNV	Breast	ALKBH3_D240N_4	HLA-C03:04	IPLNHGTLL	0.9662	0.9219	1.2606	255.16	0.3947	14.31	1/982	1/7748
SNV	Breast	APMAP_T131S_5	HLA-B18:03	GEIESIARF	0.995	0.9213	0.0767	38.04	0.0266	200.62	1/982	1/7748
SNV	Breast	ARID1B_S2118T_2	HLA-C03:04	MTMALLSNL	0.9988	0.9907	0.6288	484.77	0.4976	24.7	1/982	1/7748
SNV	Breast	CNKSR1_N138H_7	HLA-C03:04	YLFSHLHDF	0.8559	0.9559	0.2163	364.57	0.4515	22.05	1/982	1/7748
SNV	Breast	GSTP1_T68S_2	HLA-A31:01	NSILRHLGR	0.9746	0.5037	0.2449	298.5	0.3497	472.02	1/982	1/7748
SNV	Breast	GSTP1_T68S_7	HLA-C03:04	TLYQSNSIL	0.9509	0.9869	1.6158	272.91	0.4046	472.02	1/982	1/7748
SNV	Breast	NBPF12_E125Q_4	HLA-C03:04	SLNQHLQAL	0.9761	0.9916	0.248	225.42	0.3777	5.95	1/982	1/7748
SNV	Breast	PMPCA_D333A_3	HLA-B18:03	EEAFIPFAV	0.8595	0.9556	0.0698	119.44	0.0596	21.56	1/982	1/7748
SNV	Breast	PMPCA_D333A_2	HLA-C03:04	EAFIPFAVL	0.9974	0.9913	0.4733	124.16	0.297	21.56	1/982	1/7748
SNV	Breast	AKAP9_S1866R_7	HLA-C12:03	AISETSRQL	0.9986	0.9614	0.4673	316.15	0.8962	28.01	1/982	1/7748
SNV	Breast	CNTLN_E96V_4	HLA-A31:01	SVEVAMVTR	0.8386	0.8235	0.7066	407.84	0.3943	1.93	1/982	1/7748
SNV	Breast	CNTLN_E96V_9	HLA-A02:01	RLEGISVEV	0.9979	0.8657	0.4602	6.83	0.1272	1.93	1/982	1/7748
SNV	Breast	CNTLN_E96V_9	HLA-C05:01	RLEGISVEV	0.9998	0.9812	0.377	21.3	0.1262	1.93	1/982	1/7748
SNV	Breast	CNTLN_E96V_1	HLA-C12:03	VAMVTRTQL	0.9984	0.9549	0.1172	6.28	0.0774	1.93	1/982	1/7748
SNV	Breast	DIS3L2_G565R_8	HLA-A02:01	FTLDHETRL	0.9773	0.6093	0.4576	342.06	0.5939	5.89	1/982	1/7748
SNV	Breast	DIS3L2_G565R_8	HLA-C05:01	FTLDHETRL	0.9974	0.9487	0.3299	30.57	0.1428	5.89	1/982	1/7748
SNV	Breast	DIS3L2_G565R_8	HLA-C12:03	FTLDHETRL	0.9855	0.9871	0.0711	12.03	0.1439	5.89	1/982	1/7748
SNV	Breast	HID1_S521F_4	HLA-A02:01	FLFFAAQNHHL	0.9938	0.5346	1.3724	252.11	0.5445	459.09	1/982	1/7748
SNV	Breast	HID1_S521F_1	HLA-C05:01	FAAQNHHLV	0.9964	0.9605	0.1829	51.57	0.1722	459.09	1/982	1/7748
SNV	Breast	HID1_S521F_1	HLA-C12:03	FAAQNHHLV	0.9677	0.9854	0.0216	13.66	0.1611	459.09	1/982	1/7748
SNV	Breast	LRBA_R1467W_9	HLA-B44:02	QQHSQLKTW	0.905	0.6336	0.1313	463.98	0.3936	36.14	1/982	1/7748
SNV	Breast	LTBP4_T507I_7	HLA-A31:01	SAGFLPIHR	0.9614	0.57	0.1646	323.85	0.3613	21.19	1/982	1/7748
SNV	Breast	LTBP4_T507I_6	HLA-C12:03	AGFLPIHRL	0.7467	0.9907	1.3575	79.26	0.4651	21.19	1/982	1/7748
SNV	Breast	MYO1G_Q823K_9	HLA-A31:01	KVAAMGALK	0.9591	0.5146	0.2248	258.02	0.3288	6.29	1/982	1/7748
SNV	Breast	MYO1G_Q823K_6	HLA-A31:01	AMGALKGLR	0.9524	0.8009	0.1243	261.77	0.3309	6.29	1/982	1/7748
SNV	Breast	MYO1G_Q823K_7	HLA-C12:03	AAMGALKGL	0.982	0.993	0.2004	19.07	0.2025	6.29	1/982	1/7748
SNV	Breast	OR51E2_P269H_3	HLA-B39:01	LHHIVRVVM	0.9955	0.9489	0.051	196.61	0.2258	1.08	1/982	1/7748
SNV	Breast	SAMD14_S309F_9	HLA-C12:03	CSYPYHTLF	0.8202	0.978	0.1311	77.42	0.4596	1.49	1/982	1/7748
SNV	Breast	SUGP1_D467E_5	HLA-C12:03	RAMQEMQLL	0.9468	0.9847	0.1747	9.17	0.1142	18.83	1/982	1/7748
SNV	Breast	TP53_R175H_4	HLA-A31:01	VVRHCPHHER	0.9013	0.6656	0.44	244.09	0.3209	48.45	1/982	1/7748
SNV	Breast	VLDLR_M623I_8	HLA-A02:01	WLDSKLHIL	0.9813	0.6873	0.2188	6.98	0.129	4.74	1/982	1/7748
SNV	Breast	VLDLR_M623I_3	HLA-B39:01	LHILSSVDL	0.9979	0.6675	0.0576	91.51	0.1668	4.74	1/982	1/7748
SNV	Breast	VLDLR_M623I_8	HLA-C05:01	WLDSKLHIL	0.9999	0.9556	0.0299	2.1	0.0266	4.74	1/982	1/7748
SNV	Breast	VPS8_P256A_5	HLA-A02:01	FTDDATLAI	0.968	0.5386	0.3	21.98	0.2254	9.32	1/982	1/7748
SNV	Breast	VPS8_P256A_5	HLA-C05:01	FTDDATLAI	0.9999	0.9355	0.0015	1.06	0.0022	9.32	1/982	1/7748
SNV	Breast	VPS8_P256A_5	HLA-C05:01	FTDDATLAIC	0.9994	0.8368	0.2409	301.6	0.3395	9.32	1/982	1/7748
SNV	Breast	VPS8_P256A_5	HLA-C12:03	FTDDATLAI	0.6624	0.9793	0.3701	21.41	0.2199	9.32	1/982	1/7748
SNV	Breast	FBXO11_N564S_6	HLA-B15:01	GLIEGSDIY	0.9983	0.8819	0.4261	6.72	0.0639	32.81	1/982	1/7748
SNV	Breast	FBXO11_N564S_2	HLA-C15:02	GSDIYGNAL	0.9554	0.8299	0.2943	148.66	0.4645	32.81	1/982	1/7748
SNV	Breast	HUWE1_R4237H_5	HLA-C15:02	IIPKHLISI	0.9875	0.8688	0.393	412.9	0.7198	98.35	1/982	1/7748
SNV	Breast	NUB1_V301L_5	HLA-A02:01	LLDTLDNYAV	0.9947	0.7173	0.4542	485.8	0.6691	57.51	1/982	1/7748
SNV	Breast	ATP11A_V21M_2	HLA-A02:01	WMDSRTIYV	0.9968	0.5436	0.058	2.98	0.0652	13.95	1/982	1/7748
SNV	Breast	ATP11A_V21M_2	HLA-C04:01	WMDSRTIYV	0.9988	0.8834	0.2125	39.18	0.051	13.95	1/982	1/7748
SNV	Breast	BLOC1S6_T75R_2	HLA-B27:05	LRQNQVVLL	0.9998	0.8107	0.3018	18.7	0.2427	30.26	1/982	1/7748
SNV	Breast	CLCF1_E108K_1	HLA-B35:01	KAYSHLLCY	0.9837	0.7304	0.0969	463.69	0.4795	10.63	1/982	1/7748
SNV	Breast	NUDT12_A256V_8	HLA-A02:01	FLHPPMPV	0.9974	0.8633	1.3431	150.86	0.4591	16.78	1/982	1/7748
SNV	Breast	NUDT12_A256V_8	HLA-A02:01	FLHPPMPVL	0.9947	0.8187	0.072	1.76	0.0377	16.78	1/982	1/7748
SNV	Breast	NUDT12_A256V_8	HLA-A02:01	FLHPPMPVLL	0.9954	0.8161	0.5471	5.99	0.1174	16.78	1/982	1/7748
SNV	Breast	NUDT12_A256V_8	HLA-C04:01	FLHPPMPVL	0.9408	0.9655	0.2794	420.77	0.1421	16.78	1/982	1/7748
SNV	Breast	NUDT12_A256V_8	HLA-C02:02	FLHPPMPVL	0.912	0.9915	0.066	7.8	0.0115	16.78	1/982	1/7748
SNV	Breast	PLCB3_D757N_4	HLA-B35:01	LPVNTRRKY	0.9927	0.7914	0.0689	7	0.1065	24.08	1/982	1/7748
SNV	Breast	EIF2AK4_M1110I_7	HLA-A02:20	FMDHSGILV	0.9714	0.6563	0.0357	3.18	0.0317	26.59	1/982	1/7748
SNV	Breast	EIF2AK4_M1110I_7	HLA-C04:01	FMDHSGILV	0.9996	0.732	0.0315	24.82	0.0397	26.59	1/982	1/7748
SNV	Breast	EIF2AK4_M1110I_7	HLA-C05:01	FMDHSGIL	1	0.9657	0.0419	59.98	0.1823	26.59	1/982	1/7748
SNV	Breast	EIF2AK4_M1110I_7	HLA-C05:01	FMDHSGILV	0.9999	0.9575	0.0071	1.3	0.01	26.59	1/982	1/7748
SNV	Breast	EIF2AK4_M1110I_7	HLA-C05:01	FMDHSGILVM	0.9999	0.9597	0.032	8.97	0.0819	26.59	1/982	1/7748
SNV	Breast	GAL3ST4_R425H_7	HLA-C05:01	ITDRRFHPF	0.9985	0.8141	0.1133	374.29	0.3668	29.66	1/982	1/7748
SNV	Breast	PIGW_S194Y_5	HLA-B35:01	YMEGYKLHY	0.7628	0.833	0.6815	477.95	0.4833	12.94	1/982	1/7748
SNV	Breast	RIN1_P268R_8	HLA-A02:20	AVPPPPVRV	0.9719	0.7805	1.0288	344.57	0.4113	3.99	1/982	1/7748
SNV	Breast	RIN1_P268R_8	HLA-C05:01	AVPPPPVRV	0.9244	0.9244	0.2751	33.67	0.1473	3.99	1/982	1/7748
SNV	Breast	ZMYM2_R435C_6	HLA-A02:20	KLTEICHEV	0.8928	0.6314	0.0217	5.14	0.0494	30.96	1/982	1/7748
SNV	Breast	ACO2_Q727E_4	HLA-C12:03	LTIEGLKDF	0.8195	0.9834	0.3984	261.05	0.8307	126.53	1/982	1/7748
SNV	Breast	AGAP1_L637F_9	HLA-B15:01	TQNPNWASF	0.9997	0.9175	0.0139	2.45	0.0207	20.6	1/982	1/7748
SNV	Breast	AGAP1_L637F_9	HLA-B38:01	TQNPNWASF	0.7223	0.9792	0.4014	473.83	0.1732	20.6	1/982	1/7748
SNV	Breast	AGAP1_L637F_9	HLA-C12:03	TQNPNWASF	0.9655	0.9857	1.5193	216.68	0.7633	20.6	1/982	1/7748
SNV	Breast	AGAP1_L637F_4	HLA-C12:03	WASFNLGAL	0.9138	0.9866	0.2148	487.95	1.065	20.6	1/982	1/7748
SNV	Breast	AGAP1_L637F_3	HLA-C12:03	ASFNLGALM	0.9476	0.9838	0.2391	14.92	0.1744	20.6	1/982	1/7748
SNV	Breast	ANAPC1_R871K_1	HLA-A02:01	KLVVLSIAL	0.9466	0.642	0.3449	211.37	0.5159	10.74	1/982	1/7748
SNV	Breast	ANXA1_F13L_8	HLA-A24:02	EFLKQAWLI	0.9718	0.6556	0.3285	146.75	0.5064	100.06	1/982	1/7748
SNV	Breast	ARSK_P533S_6	HLA-C12:03	KTHMNSRAV	0.7997	0.9736	0.5537	205.83	0.7438	7.94	3/982	3/7748
SNV	Breast	ARSK_P533S_6	HLA-C12:03	KTHMNSRAV	0.7997	0.9736	0.5537	205.83	0.7438	7.94	3/982	3/7748
SNV	Breast	ARSK_P533S_6	HLA-C12:03	KTHMNSRAV	0.7997	0.9736	0.5537	205.83	0.7438	7.94	3/982	3/7748
SNV	Breast	BTAF1_S261Y_9	HLA-B15:01	VINQSANDY	0.9818	0.776	0.4726	270.23	0.4138	26.55	1/982	1/7748
SNV	Breast	BTAF1_S261Y_5	HLA-C12:03	SANDYKVLI	0.9056	0.9596	0.2039	16.7	0.1871	26.55	1/982	1/7748
SNV	Breast	CCDC154_S16F_4	HLA-C12:03	SAPFQLRAV	0.9644	0.9942	0.327	384.26	0.9694	2.8	1/982	1/7748
SNV	Breast	CDCA2_S80L_6	HLA-B15:01	NSAGKLSSY	0.9966	0.8596	0.259	165.35	0.3465	5.9	1/982	1/7748
SNV	Breast	CDCA2_S80L_7	HLA-B15:01	RNSAGKLSSY	0.9989	0.9265	0.7049	489.44	0.5161	5.9	1/982	1/7748
SNV	Breast	CDCA2_S80L_9	HLA-C12:03	FVRNSAGKL	0.7817	0.983	0.7113	54.61	0.3836	5.9	1/982	1/7748
SNV	Breast	CDCA2_S80L_5	HLA-C12:03	SAGKLSSYL	0.8922	0.9787	0.339	464.34	1.0445	5.9	1/982	1/7748
SNV	Breast	CLCN3_D76Y_3	HLA-A02:01	LLYEPIPGV	0.9983	0.7402	0.0169	1.08	0.0062	92.75	1/982	1/7748
SNV	Breast	CLCN3_D76Y_7	HLA-A02:01	HLLDLLYEPI	0.9965	0.641	0.488	417.39	0.6356	92.75	1/982	1/7748
SNV	Breast	CLCN3_D76Y_4	HLA-A02:01	DLLYEPIPGV	0.9414	0.7399	1.3789	56.17	0.3174	92.75	1/982	1/7748
SNV	Breast	CLCN3_D76Y_1	HLA-B15:01	YEPIPGVGTY	0.9918	0.9586	0.9504	105.1	0.2911	92.75	1/982	1/7748
SNV	Breast	CLN3_T80M_9	HLA-C12:03	QSHAVLLAM	0.985	0.9728	0.0274	35.87	0.3105	42.96	1/982	1/7748
SNV	Breast	CLN3_T80M_7	HLA-C12:03	HAVLLAMIL	0.9408	0.9902	0.3041	208.37	0.7485	42.96	1/982	1/7748
SNV	Breast	CLN3_T80M_3	HLA-C12:03	LAMILPTLV	0.8829	0.9898	0.2361	74.38	0.4502	42.96	1/982	1/7748
SNV	Breast	COG6_E180K_3	HLA-C12:03	ITKDFFKAL	0.9936	0.9846	0.0612	19.59	0.2066	10.95	1/982	1/7748
SNV	Breast	DCAF8_E368Q_2	HLA-B15:01	NQNNGVLKKF	0.9997	0.7667	0.4726	297.79	0.4303	70.22	1/982	1/7748
SNV	Breast	DIEXF_F293L_2	HLA-A02:01	LLYPERTAL	0.9649	0.595	0.4625	34.74	0.2663	26	1/982	1/7748
SNV	Breast	DIEXF_F293L_2	HLA-B15:01	LLYPERTAL	0.9957	0.8396	0.4289	226.59	0.3876	26	1/982	1/7748
SNV	Breast	DIEXF_F293L_2	HLA-C12:03	LLYPERTAL	0.9997	0.9803	0.4442	9.09	0.1134	26	1/982	1/7748
SNV	Breast	DNAH14_E2697K_3	HLA-C12:03	KAKSEIQAI	0.9444	0.9496	0.159	63.19	0.4121	4.12	1/982	1/7748
SNV	Breast	DTL_R270Q_9	HLA-A02:01	FLYPGSSTQKL	0.9982	0.598	0.5524	9.01	0.1503	20.52	1/982	1/7748
SNV	Breast	DTL_R270Q_2	HLA-B15:01	TQKLGYSSL	0.9988	0.8482	0.3756	301.35	0.4323	20.52	1/982	1/7748
SNV	Breast	EIF2B4_H182Y_5	HLA-B15:01	SLFSYLPQY	0.9946	0.8393	0.0781	24.44	0.1558	26.96	1/982	1/7748
SNV	Breast	EIF4G3_E1424K_3	HLA-C12:03	SAKELYKRL	0.9225	0.977	0.3591	243.68	0.8072	36.55	1/982	1/7748
SNV	Breast	HSPA12A_D46N_6	HLA-C12:03	IVNDTNSNV	0.8943	0.9817	1.3946	165.8	0.668	3.81	1/982	1/7748
SNV	Breast	IDI1_E279K_7	HLA-B15:01	NQFVDHKKIY	0.9993	0.5499	0.5336	61.94	0.241	47.88	1/982	1/7748
SNV	Breast	IKBKAP_S1020L_7	HLA-B38:01	AHEKALLAF	0.9729	0.9753	0.0806	84.86	0.0632	76.73	1/982	1/7748
SNV	Breast	KCNH1_E633Q_5	HLA-B38:01	IQDDQVVAI	0.5853	0.9814	0.1084	164.51	0.0941	2.75	1/982	1/7748
SNV	Breast	KCNH1_E633Q_5	HLA-C04:01	IQDDQVVAI	0.9996	0.9409	0.0297	320.76	0.1232	2.75	1/982	1/7748
SNV	Breast	KCNH1_E633Q_5	HLA-C12:03	IQDDQVVAI	0.8002	0.9892	1.0865	383.55	0.9687	2.75	1/982	1/7748
SNV	Breast	KDELR3_E117Q_6	HLA-A24:02	SFTLLQILW	0.9809	0.5629	0.4934	56.97	0.3801	91.81	1/982	1/7748
SNV	Breast	KDELR3_E117Q_4	HLA-A24:02	TLLQILWTF	0.9378	0.5815	0.1096	306.08	0.6108	91.81	1/982	1/7748
SNV	Breast	KDELR3_E117Q_7	HLA-C12:03	YSFTLLQIL	0.9792	0.9838	0.0415	15.13	0.1761	91.81	1/982	1/7748
SNV	Breast	KMO_D252H_7	HLA-A02:01	KLLTSNHVV	0.9892	0.5856	0.1218	31.03	0.2553	2.26	1/982	1/7748
SNV	Breast	KMO_D252H_1	HLA-B15:01	HVVDFFQKY	0.9977	0.9056	0.1177	11.94	0.1074	2.26	1/982	1/7748
SNV	Breast	KMO_D252H_5	HLA-C12:03	LTSNHVVDF	0.7983	0.924	0.2878	497.67	1.0731	2.26	1/982	1/7748
SNV	Breast	KMO_D252H_1	HLA-C12:03	HVVDFFQKY	0.6469	0.9644	0.1621	14.5	0.1701	2.26	1/982	1/7748
SNV	Breast	KPNB1_E479K_4	HLA-A02:01	SLAKAAYEA	0.9836	0.5784	0.3016	99.56	0.391	150.66	1/982	1/7748
SNV	Breast	KPNB1_E479K_6	HLA-B15:01	FSSLAKAAY	0.9976	0.8706	0.0643	121.52	0.3063	150.66	1/982	1/7748
SNV	Breast	MANBA_P690A_8	HLA-C12:03	FAQNFFAAL	0.9988	0.9909	0.0011	7.42	0.0942	21.16	1/982	1/7748
SNV	Breast	MANBA_P690A_3	HLA-C12:03	FAALLPVGF	0.9372	0.9746	0.1004	14.33	0.1683	21.16	1/982	1/7748
SNV	Breast	MEAF6_S92F_1	HLA-C12:03	FSVTSAAAV	0.9461	0.9823	0.0461	44	0.346	80	1/982	1/7748
SNV	Breast	PDE4DIP_L934P_6	HLA-B38:01	NRLETPAAI	0.9984	0.9717	0.065	45.05	0.0417	12.41	1/982	1/7748
SNV	Breast	SASH1_E823K_1	HLA-A02:01	KTLEGPQTV	0.9364	0.6698	0.5156	59.1	0.3239	101.31	1/982	1/7748
SNV	Breast	SASH1_E823K_1	HLA-C12:03	KTLEGPQTV	0.5369	0.9822	0.1451	18.76	0.2001	101.31	1/982	1/7748
SNV	Breast	SDC2_M30T_7	HLA-C12:03	LTSDKDTYL	0.7698	0.9818	0.339	148.15	0.6323	47.79	1/982	1/7748
SNV	Breast	SNCAIP_R650T_2	HLA-C12:03	STNSKKIPL	0.9665	0.9713	0.7049	442.53	1.0247	2.31	1/982	1/7748
SNV	Breast	SSR2_F103L_2	HLA-C12:03	YLNFTSATI	0.986	0.9698	1.4964	179.28	0.6928	184.32	1/982	1/7748
SNV	Breast	TRBV24-1_H48Y_6	HLA-B15:01	SQTKGYDRMY	0.9983	0.7346	0.911	16.75	0.1281	2.26	1/982	1/7748
SNV	Breast	USP34_M1914I_1	HLA-C12:03	IIPEARQAV	0.995	0.9884	0.8996	250.56	0.8167	27.34	1/982	1/7748
SNV	Breast	UTP3_E187K_7	HLA-C12:03	FGVAWVKAF	0.8888	0.9872	0.3089	56.18	0.3886	66.91	1/982	1/7748
SNV	Breast	ZC3H6_G1122S_2	HLA-C12:03	SSKVQVPAV	0.9964	0.9189	0.3041	456.94	1.0379	5.42	1/982	1/7748
SNV	Breast	ZNF254_S531L_7	HLA-C12:03	KAFNWSLTL	0.9909	0.9855	0.003	1.58	0.0065	13.15	1/982	1/7748
SNV	Breast	ZNF429_S242L_7	HLA-C12:03	KAFNHYLTL	0.9955	0.9835	0.0009	1.59	0.0066	13.72	1/982	1/7748
SNV	Breast	ASAP2_K209R_2	HLA-C07:02	IRIKKGVDL	0.8117	0.7425	0.2011	23.08	0.0834	17.62	1/982	1/7748
SNV	Breast	ALDH1A3_A493S_1	HLA-A02:01	SLAEYTEV	0.9965	0.8258	1.8382	426.15	0.6402	6.65	1/982	1/7748
SNV	Breast	ALDH1A3_A493S_1	HLA-A02:01	SLAEYTEVKTV	0.9968	0.7477	1.0119	204.66	0.5107	6.65	1/982	1/7748
SNV	Breast	DCDC1_R103T_3	HLA-A02:01	LQTDELVYV	0.9934	0.5907	0.1953	24.41	0.2343	1.52	1/982	1/7748
SNV	Breast	RASSF7_P314R_3	HLA-B07:02	GPRGTQGPL	0.9997	0.7077	0.0109	1.36	0.0155	109.93	1/982	1/7748
SNV	Breast	RNF31_R485W_3	HLA-A02:01	KMWEEGLQL	0.9978	0.6597	0.1691	1.37	0.0162	29.13	1/982	1/7748
SNV	Breast	RNF31_R485W_3	HLA-A02:01	KMWEEGLQLV	0.9993	0.6951	0.3016	3.9	0.0801	29.13	1/982	1/7748
SNV	Breast	C6orf15_E113K_5	HLA-A24:02	SWPPKDPWQM	0.9757	0.9057	0.2895	31.14	0.3154	1.58	1/982	1/7748
SNV	Breast	C6orf15_E113K_4	HLA-B35:01	WPPKDPWQM	0.985	0.538	0.2547	19.34	0.1739	1.58	1/982	1/7748
SNV	Breast	COASY_P184L_10	HLA-B07:02	RPASPVAGSL	0.9996	0.6667	0.024	1.35	0.0153	94.71	1/982	1/7748
SNV	Breast	FBXO46_E458Q_6	HLA-C04:01	SHDFLQIRF	0.9973	0.7326	0.4728	373.99	0.1335	43.49	1/982	1/7748
SNV	Breast	GANAB_S249F_1	HLA-B35:01	FLPGMEHVY	0.9565	0.9704	0.3947	237.53	0.3961	352.87	1/982	1/7748
SNV	Breast	HMCN1_P242S_7	HLA-C07:02	WRIPFDSSL	0.9104	0.9501	0.0573	9.59	0.0467	11.07	1/982	1/7748
SNV	Breast	PCDHB6_E579K_6	HLA-B35:01	VPRAAKPGY	0.8839	0.5912	0.1506	54.32	0.2514	4.2	1/982	1/7748
SNV	Breast	PCDHB6_E579K_6	HLA-B07:02	VPRAAKPGYL	0.9988	0.6117	0.0471	4.07	0.0658	4.2	1/982	1/7748
SNV	Breast	PDE12_S109L_1	HLA-B35:01	LGPGPEPAVF	0.9486	0.9708	1.4679	262.93	0.408	17.83	1/982	1/7748
SNV	Breast	PDE12_S109L_11	HLA-B07:02	RPNASGGAACL	0.9999	0.6658	0.1069	5.35	0.0759	17.83	1/982	1/7748
SNV	Breast	SEL1L3_E791Q_7	HLA-A24:02	KYWLKAQEM	0.9955	0.5299	0.174	22.43	0.2842	11.77	1/982	1/7748
SNV	Breast	SEL1L3_E791Q_7	HLA-C07:02	KYWLKAQEM	0.7834	0.9875	0.1631	25.51	0.0891	11.77	1/982	1/7748
SNV	Breast	SNAI3_H205Y_3	HLA-A11:01	RTYTLPCTCK	0.9988	0.6305	0.0375	138.7	0.358	3.35	1/982	1/7748
SNV	Breast	SNAI3_H205Y_7	HLA-C07:02	KMHIRTYTL	0.8761	0.9373	0.6168	301.23	0.3227	3.35	1/982	1/7748
SNV	Breast	TMPRSS13_S40F_1	HLA-B35:01	FPAQASPAG	0.9549	0.7453	0.2389	116.28	0.3229	18.99	1/982	1/7748
SNV	Breast	TMPRSS13_S40F_9	HLA-C07:02	GRASPAQAF	0.8337	0.9285	0.1449	25.7	0.0895	18.99	1/982	1/7748
SNV	Breast	ARAF_Q412H_3	HLA-B27:05	ARHTAQGMDY	0.9998	0.5263	0.1732	171.32	0.4674	80.43	1/982	1/7748
SNV	Breast	ASTN2_P494Q_4	HLA-C14:02	WLNQAKLSL	0.9859	0.9551	1.1766	181.9	0.6626	3.24	1/982	1/7748
SNV	Breast	BRPF1_K533N_3	HLA-B27:05	QRNSQFMQRL	0.9999	0.7977	0.3115	288.05	0.5294	19.62	1/982	1/7748
SNV	Breast	CYP21A2_E320K_4	HLA-A02:01	RLQKELDHEL	0.9191	0.6192	1.1663	463.21	0.6586	3.55	1/982	1/7748
SNV	Breast	HRH1_D306N_8	HLA-A02:01	KLYCFPLNI	0.9958	0.7128	0.1104	17.46	0.2059	5.25	1/982	1/7748
SNV	Breast	ITGA11_E913K_6	HLA-B27:05	FRLDFKFSK	0.9994	0.9046	0.0455	2.03	0.064	36.96	1/982	1/7748
SNV	Breast	MED13L_S1570F_10	HLA-C14:02	AFNPTSNSSF	0.9589	0.9362	0.0988	59.21	0.382	27.51	1/982	1/7748
SNV	Breast	NAALADL2_S33L_6	HLA-C14:02	RAPGHLQYL	0.9171	0.9596	0.1623	33.23	0.2846	5.26	1/982	1/7748
SNV	Breast	NAALADL2_S33L_6	HLA-C01:02	RAPGHLQYL	0.8744	0.9334	0.0004	172.4	0.0133	5.26	1/982	1/7748
SNV	Breast	NARS2_E450K_1	HLA-B27:05	KRYLQCILGV	0.9998	0.8282	0.5181	74.34	0.3756	13.86	1/982	1/7748
SNV	Breast	NCKAP1_T703S_4	HLA-C14:02	HTFSPREYL	0.8932	0.9007	0.7246	84.08	0.4599	16.26	1/982	1/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:05	ARHGGWTTK	0.9983	0.8261	0.1474	11.97	0.2093	8.34	11/982	17/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:05	ARHGGWTTKM	0.9998	0.666	0.0388	24.5	0.2651	8.34	11/982	17/7748
SNV	Breast	SSC5D_A527V_7	HLA-B27:05	GRFGWGVGP	0.9963	0.6225	0.6232	17.23	0.2366	13.65	1/982	1/7748
SNV	Breast	SSC5D_A527V_7	HLA-B27:05	GRFGWGVGPI	0.9999	0.6165	0.4321	2.17	0.0701	13.65	1/982	1/7748
SNV	Breast	SSC5D_A527V_7	HLA-B27:05	GRFGWGVGPIW	0.9999	0.5804	0.0585	5.07	0.1429	13.65	1/982	1/7748
SNV	Breast	TASP1_H53Y_2	HLA-C14:02	YYSESKAKEY	0.9241	0.9165	0.2381	153.69	0.614	17.39	1/982	1/7748
SNV	Breast	UBE2G2_H79Y_9	HLA-B27:05	MRFTCEMFY	0.999	0.9344	0.1303	9.11	0.187	41.94	1/982	1/7748
SNV	Breast	XPO5_S369Y_3	HLA-B27:05	LRYSTQMTW	0.998	0.8603	0.2929	3.05	0.0971	15.41	1/982	1/7748
SNV	Breast	ZKSCAN2_E578D_4	HLA-C14:02	FYKDMDAL	0.9357	0.9369	0.3296	165.07	0.6346	2.26	1/982	1/7748
SNV	Breast	EDC4_A151T_8	HLA-A02:01	FLAYAIRTA	0.9916	0.5977	0.2314	23.13	0.2297	11.57	1/982	1/7748
SNV	Breast	LMTK2_R457H_4	HLA-A02:01	RLGHEMEEV	0.9934	0.7161	0.3297	12.27	0.175	15.98	1/982	1/7748
SNV	Breast	LMTK2_R457H_7	HLA-C07:01	ARDRLGHEM	0.9965	0.6903	0.0907	402.85	0.1594	15.98	1/982	1/7748
SNV	Breast	RNF135_G418V_1	HLA-A02:01	VLHPGNYLI	0.9686	0.5419	0.0495	4.11	0.088	34.38	1/982	1/7748
SNV	Breast	RNF135_G418V_8	HLA-B35:03	YPAFWLYVL	0.9917	0.7642	0.0161	15.88	0.0445	34.38	1/982	1/7748
SNV	Breast	SEPT3_S184F_8	HLA-A02:01	FISPTGHFL	0.981	0.7158	0.0516	8.94	0.1497	2.15	1/982	1/7748
SNV	Breast	SEPT3_S184F_9	HLA-C04:01	YFISPTGHFL	0.9557	0.848	0.3734	179.25	0.0939	2.15	1/982	1/7748
SNV	Breast	CX3CR1_L159S_8	HLA-A02:01	GVWAAAISV	0.9778	0.5607	0.2542	6.58	0.1243	20.62	1/982	1/7748
SNV	Breast	KLHDC7A_P747A_3	HLA-C12:02	FVAKELRSF	0.9957	0.9653	0.0568	15.1	0.043	123.16	1/982	1/7748
SNV	Breast	NEGR1_A80E_4	HLA-A02:01	IIFEGGDKWSV	0.992	0.775	0.6655	138.97	0.445	5.35	1/982	1/7748
SNV	Breast	ABHD4_R46K_4	HLA-B08:01	FLAKYVSL	0.9997	0.6521	1.0549	36.74	0.0955	66.27	1/982	1/7748
SNV	Breast	ACTG2_S235F_1	HLA-A02:01	FSLEKSYEL	0.9876	0.7477	0.3	181.4	0.4906	1.37	1/982	1/7748
SNV	Breast	ACTG2_S235F_1	HLA-B08:01	FSLEKSYEL	0.9943	0.6665	0.1504	482.17	0.3287	1.37	1/982	1/7748
SNV	Breast	ACTG2_S235F_1	HLA-C05:01	FSLEKSYEL	0.9962	0.9673	0.2823	31.18	0.1437	1.37	1/982	1/7748
SNV	Breast	APOBR_R725K_5	HLA-B44:02	AEADKTSRRGW	0.9999	0.6574	0.0241	1.23	0.0064	68.57	1/982	1/7748
SNV	Breast	ARHGAP28_E407Q_7	HLA-A02:01	VLQKFFQKV	0.9964	0.7065	0.097	46.05	0.2938	1.06	1/982	1/7748
SNV	Breast	ATAD5_E526Q_2	HLA-B08:01	TQFFKSSTL	0.9767	0.5718	0.159	388.73	0.2999	2.62	1/982	1/7748
SNV	Breast	CDK11B_G450A_8	HLA-A02:01	RIEEGTYAV	0.9581	0.7403	0.3222	29.47	0.2503	22.64	1/982	1/7748
SNV	Breast	CDK11B_G450A_8	HLA-C05:01	RIEEGTYAV	0.9999	0.952	0.4627	8.46	0.0789	22.64	1/982	1/7748
SNV	Breast	CENPJ_D409N_5	HLA-C05:01	STSENQPLF	0.9931	0.9329	0.8139	370.52	0.3655	2.21	1/982	1/7748
SNV	Breast	CPT2_E97K_4	HLA-B08:01	ELHKQLVAL	0.9976	0.5563	0.0208	18.22	0.0602	12.7	1/982	1/7748
SNV	Breast	DHX57_P1028A_6	HLA-A02:01	RLIEPAHTDSL	0.9952	0.789	1.2919	281.98	0.5626	11	1/982	1/7748
SNV	Breast	FAM210B_R164T_7	HLA-A02:01	KLFAPVTISI	0.9981	0.6759	0.1825	13.64	0.1844	144.7	1/982	1/7748
SNV	Breast	FBXO24_P502L_9	HLA-C07:01	SRVVGTPEL	0.9984	0.6694	0.044	40.04	0.0575	1.79	1/982	1/7748
SNV	Breast	FLI1_E218Q_2	HLA-C05:01	KQDPSYDSV	0.9997	0.8623	0.1133	156.3	0.2603	5.99	1/982	1/7748
SNV	Breast	GIMAP2_D80H_6	HLA-C05:01	IIDTPHMF	1	0.844	0.0968	214.14	0.2965	18.5	1/982	1/7748
SNV	Breast	GIMAP2_D80H_7	HLA-C05:01	VIIDTPHMF	0.9459	0.9536	0.4723	453.33	0.391	18.5	1/982	1/7748
SNV	Breast	GMIP_E157K_5	HLA-B08:01	TLFLKHDL	0.9967	0.681	0.2102	414.52	0.3085	20.23	1/982	1/7748
SNV	Breast	GRHL3_E232Q_7	HLA-A02:01	SLKSDFQYTL	0.9145	0.61	0.8915	30.27	0.2529	2.38	1/982	1/7748
SNV	Breast	GTF3C5_E478Q_7	HLA-C05:01	KADGGKQQL	1	0.9587	0.005	10.78	0.0937	47.3	1/982	1/7748
SNV	Breast	HLA-DMB_W207C_5	HLA-A02:01	ILRDCTPGL	0.8379	0.601	0.1668	107.69	0.4014	32.33	1/982	1/7748
SNV	Breast	HNRNPK_D244V_2	HLA-C05:01	FVDRRGRPV	0.9994	0.9246	0.0819	383.48	0.3699	319.4	1/982	1/7748
SNV	Breast	HS6ST1_F308L_7	HLA-B08:01	YLFERTLNL	0.9971	0.5126	0.0104	4.83	0.0199	42.96	1/982	1/7748
SNV	Breast	HS6ST1_F308L_7	HLA-C07:01	YLFERTLNL	0.5788	0.6303	0.6843	26.22	0.0446	42.96	1/982	1/7748
SNV	Breast	HS6ST1_F308L_7	HLA-C05:01	YLFERTLNL	0.9806	0.9524	0.3629	5.47	0.0611	42.96	1/982	1/7748
SNV	Breast	IFT172_G150R_2	HLA-C07:01	YRTESYVVSL	0.9994	0.5682	0.2849	306.14	0.1391	12.65	1/982	1/7748
SNV	Breast	IFT172_G150R_1	HLA-C05:01	RTESYVVSL	1	0.8836	0.2449	35.67	0.1499	12.65	1/982	1/7748
SNV	Breast	IGHV3-13_M101I_6	HLA-A02:01	SLYLQINSL	0.9266	0.5977	0.4654	8.81	0.1484	17.88	1/982	1/7748
SNV	Breast	IQSEC2_D1075N_1	HLA-A02:01	NLRESIAEV	0.9027	0.6748	0.534	49.71	0.3016	12	1/982	2/7748
SNV	Breast	IRF6_W13S_7	HLA-B08:01	RVRLKPSL	0.9991	0.5196	0.1318	7.06	0.0304	73.3	1/982	1/7748
SNV	Breast	IRF6_W13S_7	HLA-B08:01	RVRLKPSLV	0.9123	0.5475	0.1027	279.87	0.2648	73.3	1/982	1/7748
SNV	Breast	KIAA1551_E1416K_4	HLA-B08:01	NPNKRAIV	0.9979	0.5187	0.5911	155.81	0.2113	30.15	1/982	1/7748
SNV	Breast	LRPPRC_E1313Q_8	HLA-A02:01	SVLELIPQL	0.989	0.6631	0.2256	2.87	0.0624	50.85	1/982	1/7748
SNV	Breast	LYST_F424L_7	HLA-C05:01	SAASNPLYF	0.8658	0.9382	0.6601	453.66	0.3911	3.37	1/982	1/7748
SNV	Breast	MYL12A_S28L_7	HLA-C05:01	FAMFDQLQI	0.9742	0.9883	0.938	499.06	0.4042	212.05	1/982	1/7748
SNV	Breast	NPAT_P225R_2	HLA-C07:01	GRHSTIRNF	0.9971	0.5831	0.0676	74.54	0.0771	5.25	1/982	1/7748
SNV	Breast	PAFAH1B1_S57C_9	HLA-A02:01	GLLEKKWTCV	0.9886	0.6149	1.1663	75.9	0.3561	23.59	1/982	1/7748
SNV	Breast	PDZD2_D382N_4	HLA-A02:01	SLGNELLVI	0.9695	0.5774	0.6863	172.77	0.4823	1.89	1/982	1/7748
SNV	Breast	PDZD2_D382N_7	HLA-C07:01	GRLSLGNEL	0.9945	0.7793	0.0993	184.05	0.1128	1.89	1/982	1/7748
SNV	Breast	PEX10_S89L_2	HLA-A02:01	SLLRRGVLV	0.9271	0.7565	0.4542	213.55	0.5175	27.33	1/982	1/7748
SNV	Breast	PEX10_S89L_2	HLA-B08:01	SLLRRGVL	0.9991	0.566	0.1208	29.41	0.0813	27.33	1/982	1/7748
SNV	Breast	PEX10_S89L_8	HLA-C07:01	SRIHVPSLL	0.9989	0.8072	0.0107	6.04	0.0112	27.33	1/982	1/7748
SNV	Breast	PHC1_H416N_4	HLA-A02:01	QLLNTATHL	0.9531	0.5064	0.4495	458.78	0.6565	4.68	1/982	1/7748
SNV	Breast	PXMP4_S176F_3	HLA-C07:01	HRFTLQPSL	0.9994	0.8713	0.0061	10.61	0.0205	26.87	1/982	1/7748
SNV	Breast	RAI2_R522W_8	HLA-B08:01	MLPIKKQWL	0.9259	0.7725	0.3506	235.42	0.247	27.08	1/982	1/7748
SNV	Breast	RASEF_T318I_8	HLA-C05:01	YADQSLNI	1	0.9238	0.0209	203.83	0.2909	23.73	1/982	1/7748
SNV	Breast	RC3H2_P590A_9	HLA-A02:01	FLTRVPVYA	0.9882	0.6248	0.1134	6.01	0.1177	6.94	1/982	1/7748
SNV	Breast	RHOBTB1_E75K_4	HLA-C05:01	VVDKVSVSL	1	0.9721	0.0045	1.32	0.0105	35.24	1/982	2/7748
SNV	Breast	RTTN_H625N_4	HLA-A02:01	MLSNPLPRV	0.9984	0.6691	0.0989	1.93	0.0431	2.26	1/982	1/7748
SNV	Breast	RTTN_H625N_5	HLA-A02:01	HMLSNPLPRV	0.9978	0.6189	0.2085	414.49	0.6341	2.26	1/982	1/7748
SNV	Breast	RTTN_H625N_4	HLA-C05:01	MLSNPLPRV	0.9969	0.9618	1.4729	172.1	0.2714	2.26	1/982	1/7748
SNV	Breast	SCN8A_R122T_1	HLA-C07:01	TRIAIKILI	0.9989	0.767	0.1878	52.32	0.0669	9.7	1/982	1/7748
SNV	Breast	SLC12A7_E907K_6	HLA-C07:01	LRISAKVEV	0.9762	0.8054	0.2095	319.64	0.1424	26.1	1/982	2/7748
SNV	Breast	SLC2A13_D360N_5	HLA-C05:01	GVEDNRLAI	0.9994	0.8449	0.4291	289.47	0.3343	6.35	1/982	1/7748
SNV	Breast	SRGAP1_M155I_7	HLA-A02:01	QLHEDLIKV	0.9958	0.5855	0.1006	1.68	0.0349	12.56	1/982	1/7748
SNV	Breast	SRGAP1_M155I_8	HLA-A02:01	FQLHEDLIKV	0.9913	0.6997	0.292	2.28	0.0516	12.56	1/982	1/7748
SNV	Breast	STIP1_R331Q_6	HLA-A02:01	SLAEHQTPDV	0.9924	0.6041	0.8011	398.56	0.6254	95.56	1/982	1/7748
SNV	Breast	SUGP2_R73T_2	HLA-C05:01	STDAGREGL	0.9999	0.9737	0.0299	33.43	0.1469	22.53	1/982	1/7748
SNV	Breast	TPR_Q2329H_5	HLA-B08:01	RVRLHTTL	0.9934	0.5302	0.2567	29.77	0.0821	26.64	1/982	1/7748
SNV	Breast	TPR_Q2329H_6	HLA-C07:01	RRVRLHTTL	0.9979	0.6484	0.0245	137.79	0.102	26.64	1/982	1/7748
SNV	Breast	TRIM13_E384K_1	HLA-C07:01	KRFKNFTLV	0.9849	0.7898	0.0107	132.57	0.1005	10.41	1/982	1/7748
SNV	Breast	WAC_L629F_9	HLA-C07:01	LREQRILFF	0.9801	0.7652	0.1399	78.94	0.0786	26.1	1/982	1/7748
SNV	Breast	ZFP36L2_S2W_8	HLA-A02:01	TLLSAFYDV	0.9909	0.6254	0.0288	21.05	0.2217	66.69	3/982	3/7748
SNV	Breast	ZFP36L2_S2W_8	HLA-A02:01	TLLSAFYDV	0.9909	0.6254	0.0288	21.05	0.2217	66.69	3/982	3/7748
SNV	Breast	ZFP36L2_S2W_8	HLA-A02:01	TLLSAFYDV	0.9909	0.6254	0.0288	21.05	0.2217	66.69	3/982	3/7748
SNV	Breast	ZRANB3_G1069V_2	HLA-C05:01	HVSDITRFL	0.9994	0.8795	0.4291	328.83	0.3504	1.39	1/982	1/7748
SNV	Breast	ZRANB3_G1069V_1	HLA-C05:01	VSDITRFLV	0.9999	0.9495	0.0943	16.51	0.1143	1.39	1/982	1/7748
SNV	Breast	CDK5RAP1_R414W_9	HLA-B58:01	SSRVLEAMW	0.9992	0.9707	0.0769	4.49	0.0788	14.29	1/982	1/7748
SNV	Breast	CDK5RAP1_R414W_10	HLA-B58:01	GSSRVLEAMW	0.9996	0.9831	0.2104	31.3	0.2447	14.29	1/982	1/7748
SNV	Breast	CTSS_K226N_8	HLA-C07:01	YRAATCSNY	0.991	0.6706	0.1878	403.94	0.1596	64.09	1/982	1/7748
SNV	Breast	FAM171B_R513W_9	HLA-B58:01	LGDAQDEKW	0.9756	0.985	0.2924	337.55	0.5803	9.27	1/982	1/7748
SNV	Breast	FAM171B_R513W_11	HLA-B58:01	SSLGDAQDEKW	0.9997	0.9814	0.1634	10.69	0.1455	9.27	1/982	1/7748
SNV	Breast	GYG2_F234L_7	HLA-B58:01	YTYSPALKQF	0.9982	0.6322	0.5759	36.92	0.2634	1.34	1/982	1/7748
SNV	Breast	IL3RA_L110V_6	HLA-B58:01	AGAENVTCW	0.9973	0.9678	0.1898	61.77	0.3295	5.27	1/982	1/7748
SNV	Breast	IL3RA_L110V_7	HLA-B58:01	WAGAENVTCW	0.9938	0.9635	0.2924	189.23	0.4835	5.27	1/982	1/7748
SNV	Breast	PTCH1_E947Q_10	HLA-B58:01	QANIRPHRPQW	0.9906	0.9904	0.8984	350.54	0.5868	4.72	1/982	1/7748
SNV	Breast	RAB6A_K144Q_1	HLA-B58:01	QAKELNVMF	0.9282	0.98	0.2691	289.18	0.5535	211.63	1/982	1/7748
SNV	Breast	RSPH3_L405V_1	HLA-B58:01	VADLLPSVF	0.7893	0.9164	0.3157	410.98	0.6184	3.93	1/982	1/7748
SNV	Breast	RSPH3_L405V_2	HLA-C08:02	YVADLLPSV	0.9875	0.9926	0.6666	57.39	0.0514	3.93	1/982	1/7748
SNV	Breast	RSPH3_L405V_1	HLA-C08:02	VADLLPSVF	0.9997	0.9863	0.0554	10.99	0.0204	3.93	1/982	1/7748
SNV	Breast	SSR1_L140P_4	HLA-C08:02	FTAPPLNTV	0.9944	0.9883	0.1621	31.65	0.0397	120.87	1/982	1/7748
SNV	Breast	ETF1_F148L_10	HLA-A02:01	LLSDDSKFGL	0.957	0.5046	0.4542	162.58	0.4719	69.41	1/982	1/7748
SNV	Breast	ETF1_F148L_11	HLA-A02:01	ALLSDDSKFGL	0.9943	0.5325	0.672	375.14	0.6121	69.41	1/982	1/7748
SNV	Breast	ETF1_F148L_9	HLA-C05:01	LSDDSKFGL	0.9999	0.789	0.0278	3.63	0.0451	69.41	1/982	1/7748
SNV	Breast	FLII_E1113K_6	HLA-C05:01	ASDPDKAKL	1	0.9666	0.011	4.65	0.0534	210.09	1/982	1/7748
SNV	Breast	ATG101_K191N_4	HLA-C05:01	YLYNISFQI	0.7675	0.8285	1.9998	46.93	0.1665	27.02	1/982	1/7748
SNV	Breast	BCL11A_G677R_2	HLA-C07:01	FRDSRQSPF	0.9886	0.516	0.051	117.07	0.0943	9.44	1/982	1/7748
SNV	Breast	BROX_K266N_4	HLA-C05:01	ASDNCGEAI	0.9997	0.8155	0.049	323.37	0.3483	64.33	1/982	1/7748
SNV	Breast	EIF2B5_D236N_8	HLA-A02:01	SLFQGSSNGV	0.9865	0.8267	0.3574	152.77	0.4612	60.42	1/982	1/7748
SNV	Breast	LTA_D84N_6	HLA-C07:01	WRANTNRAF	0.9899	0.8871	0.1431	34.83	0.0524	2.21	1/982	1/7748
SNV	Breast	PABPC1L_R50C_6	HLA-B08:01	DVATRCSL	0.996	0.6023	0.7336	238.31	0.2481	6.22	1/982	1/7748
SNV	Breast	PLXNA4_R483W_9	HLA-C05:01	VVDPGPVLW	0.9966	0.9755	0.2198	5.04	0.0571	1.8	1/982	1/7748
SNV	Breast	PLXNA4_R483W_9	HLA-C05:01	VVDPGPVLWDM	1	0.9883	0.1573	30.38	0.1425	1.8	1/982	1/7748
SNV	Breast	PRMT5_D39H_7	HLA-B08:01	VAKQGFHFL	0.887	0.7847	0.1787	69.64	0.1418	112.31	1/982	1/7748
SNV	Breast	TP53_V157F_3	HLA-C07:01	TRFRAMAIY	0.9925	0.6703	0.2377	411.71	0.1609	98.14	1/982	10/7748
SNV	Breast	TP53_V157F_9	HLA-C05:01	STPPPGTRF	0.6846	0.9491	0.325	110.36	0.229	98.14	1/982	7/7748
SNV	Breast	CLUH_T884I_6	HLA-A02:05	GAADNIAWAV	0.9775	0.8165	0.6577	159.2	0.3112	22.67	1/982	1/7748
SNV	Breast	CLUH_T884I_6	HLA-B58:01	GAADNIAW	0.9965	0.9901	0.8054	178.19	0.4749	22.67	1/982	1/7748
SNV	Breast	KIFC1_C153F_2	HLA-C07:01	RFRERTQTL	0.7348	0.7153	0.7774	440.54	0.1657	30.27	1/982	1/7748
SNV	Breast	KIFC1_C153F_3	HLA-C07:01	KRFRERTQTL	0.9983	0.7083	0.102	217.14	0.1189	30.27	1/982	1/7748
SNV	Breast	RAD54B_G726V_6	HLA-B58:01	KAGGVVLNL	0.9826	0.9845	0.2504	27.34	0.2325	1.82	1/982	1/7748
SNV	Breast	RAD54B_G726V_8	HLA-C12:03	SSKAGGVVL	0.9894	0.9845	0.1782	29.53	0.2737	1.82	1/982	1/7748
SNV	Breast	RAD54B_G726V_6	HLA-C12:03	KAGGVVLNL	0.8753	0.9914	0.252	71.72	0.4417	1.82	1/982	1/7748
SNV	Breast	RGS9_R515W_8	HLA-B58:01	ASPSRFIW	0.9981	0.8084	0.7913	138.1	0.4384	1.94	1/982	1/7748
SNV	Breast	RGS9_R515W_9	HLA-B58:01	FASPSRFIW	0.9989	0.8762	0.0034	1.36	0.0143	1.94	1/982	1/7748
SNV	Breast	RGS9_R515W_10	HLA-B58:01	PFASPSRFIW	0.9405	0.8774	1.5503	373.76	0.5979	1.94	1/982	1/7748
SNV	Breast	RGS9_R515W_11	HLA-B58:01	KPFASPSRFIW	0.988	0.8014	0.5526	43.18	0.2831	1.94	1/982	1/7748
SNV	Breast	RGS9_R515W_3	HLA-C12:03	FIWRPSTTI	0.999	0.9821	0.4101	33.16	0.2964	1.94	1/982	1/7748
SNV	Breast	ZBTB37_A268S_3	HLA-C12:03	SSSEEVTAM	0.9839	0.9857	0.0436	19	0.202	5.54	1/982	1/7748
SNV	Breast	ZHX3_R372W_5	HLA-B18:01	IEDAWKKMF	0.9923	0.9184	0.1296	213.8	0.2028	7.47	1/982	1/7748
SNV	Breast	ZHX3_R372W_7	HLA-B18:01	EEIEDAWKKM	0.9871	0.8427	0.2361	355.13	0.2377	7.47	1/982	1/7748
SNV	Breast	ADRA2B_G350D_2	HLA-B44:03	VDAIGGQWW	0.8843	0.9867	0.499	237.69	0.3505	4.08	1/982	1/7748
SNV	Breast	AP2M1_L112M_4	HLA-B44:03	YELMDEILDF	0.9867	0.9244	0.2505	68.34	0.2551	123.39	1/982	1/7748
SNV	Breast	ARAP3_K605E_4	HLA-C07:02	LFREPHPQY	0.5762	0.939	0.484	361.97	0.3498	2.32	1/982	1/7748
SNV	Breast	ASL_E73D_3	HLA-B44:03	AEDWAQGTF	0.9874	0.9731	0.0915	8.62	0.1152	11.82	1/982	1/7748
SNV	Breast	AZGP1_A178V_9	HLA-B44:03	AEPVYVQRV	0.9496	0.9394	1.178	459.45	0.4033	3088.77	1/982	1/7748
SNV	Breast	AZGP1_A178V_5	HLA-C16:01	YVQRVKAYL	0.9273	0.9366	0.9879	71.49	0.3566	3088.77	1/982	1/7748
SNV	Breast	BCORL1_T345M_9	HLA-C07:02	VLAPMPASM	0.684	0.9854	0.8174	470.82	0.3886	5.34	1/982	1/7748
SNV	Breast	BCORL1_T345M_9	HLA-C16:01	VLAPMPASM	0.9699	0.9909	0.2496	8.09	0.0814	5.34	1/982	1/7748
SNV	Breast	CCSER2_Y627F_1	HLA-C07:02	FRESPLGHF	0.8497	0.9411	0.028	85.66	0.1791	13.62	1/982	1/7748
SNV	Breast	CD33_Y129H_4	HLA-C07:02	KYSHKSPQL	0.5877	0.9062	0.1136	352	0.3456	1.52	1/982	1/7748
SNV	Breast	CDC20_P19L_9	HLA-C16:01	HSLLQLDAL	0.7559	0.9867	0.9025	433.84	0.7982	198.08	1/982	1/7748
SNV	Breast	CDH11_H233Q_4	HLA-B44:03	EEYQVVIQA	0.7828	0.9022	0.3839	427.14	0.3966	8.46	1/982	1/7748
SNV	Breast	DCAF12_R152T_7	HLA-B44:03	IELNPSTTL	0.9227	0.9639	0.1742	130.73	0.3036	102.01	1/982	1/7748
SNV	Breast	DENND5B_L1075F_3	HLA-C07:02	RRFSITSL	0.9934	0.8975	0.2519	212.87	0.2772	1.21	1/982	1/7748
SNV	Breast	DENND5B_L1075F_4	HLA-C07:02	ARRFSITSL	0.8431	0.8942	0.1356	65.58	0.1565	1.21	1/982	1/7748
SNV	Breast	GBF1_R906L_9	HLA-C16:01	YVWNVLLHL	0.9072	0.9744	0.2431	122.15	0.4665	22.04	1/982	1/7748
SNV	Breast	GK5_E422Q_8	HLA-C07:02	FRNKQLYQM	0.9965	0.9325	0.0021	6.03	0.0277	19.38	1/982	1/7748
SNV	Breast	HLA-DMB_A181D_4	HLA-C07:02	SHLDLTPSY	0.7586	0.9637	0.1356	116.21	0.2098	42.97	1/982	1/7748
SNV	Breast	HOMER2_A205E_2	HLA-B44:03	SEASVEQW	0.9998	0.94	0.0935	4.23	0.0795	5.41	1/982	1/7748
SNV	Breast	HOMER2_A205E_4	HLA-B44:03	QESEASVEQW	0.9997	0.9343	0.0055	1.43	0.02	5.41	1/982	1/7748
SNV	Breast	LEMD2_L272P_5	HLA-C16:01	ALLEPLHEL	0.9611	0.9846	0.5381	56.1	0.3073	17.29	1/982	1/7748
SNV	Breast	MON2_S1609L_6	HLA-C07:02	SRMALLVLL	0.9809	0.9022	0.052	9.8	0.0478	6.08	1/982	1/7748
SNV	Breast	MON2_S1609L_7	HLA-C16:01	ISRMALLVL	0.8614	0.956	0.7645	86.13	0.3945	6.08	1/982	1/7748
SNV	Breast	MPI_V154L_4	HLA-C07:02	FRPLEEIVTF	0.9971	0.9617	0.1528	224.86	0.2837	14.05	1/982	1/7748
SNV	Breast	MPI_V154L_3	HLA-C16:01	RPLEEIVTF	0.6321	0.9729	1.8465	73.56	0.3624	14.05	1/982	1/7748
SNV	Breast	MPLKIP_S161T_6	HLA-A25:01	SVVDITQQY	0.9663	0.6301	0.0004	4.3	0.005	15.87	1/982	1/7748
SNV	Breast	MPLKIP_S161T_6	HLA-C16:01	SVVDITQQY	0.5128	0.9442	0.0816	110.97	0.4467	15.87	1/982	1/7748
SNV	Breast	MTMR12_T520S_1	HLA-C07:02	SVWDWSVQF	0.9503	0.9115	1.2628	194.84	0.2668	43.53	1/982	1/7748
SNV	Breast	MTMR12_T520S_1	HLA-C16:01	SVWDWSVQF	0.9864	0.9552	0.1031	15.9	0.1463	43.53	1/982	1/7748
SNV	Breast	OBSCN_E5114K_7	HLA-B07:02	APVVPPKPL	0.9991	0.5001	0.0325	1.51	0.0209	1.68	1/982	1/7748
SNV	Breast	OBSCN_E5114K_9	HLA-B07:02	TPAPVVPPKPL	0.9999	0.6279	0.1859	428.56	0.3884	1.68	1/982	1/7748
SNV	Breast	PFKP_T739M_7	HLA-B44:03	AELKKQMDF	0.9984	0.9405	0.0769	4.54	0.0829	97.7	1/982	1/7748
SNV	Breast	RASGRP2_P401S_3	HLA-B07:02	TPSPRPPVL	0.9998	0.6709	0.0234	1.46	0.0192	1.72	1/982	1/7748
SNV	Breast	RASGRP2_P401S_1	HLA-B07:02	SPRPPVLEE	0.9969	0.5972	0.4666	323.46	0.3636	1.72	1/982	1/7748
SNV	Breast	RASGRP2_P401S_1	HLA-B07:02	SPRPPVLEEW	0.9899	0.6266	0.508	379.18	0.3776	1.72	1/982	1/7748
SNV	Breast	RASGRP2_P401S_3	HLA-C16:01	TPSPRPPVL	0.6883	0.9913	1.2446	446.63	0.8073	1.72	1/982	1/7748
SNV	Breast	SBF1_T810M_5	HLA-A25:01	ESYDMESGF	0.9948	0.7756	0.0296	344.71	0.0587	17.04	1/982	1/7748
SNV	Breast	SBF1_T810M_6	HLA-B44:03	AESYDMESGF	0.9951	0.9472	0.0872	4.04	0.0774	17.04	1/982	1/7748
SNV	Breast	SUGT1_K241N_6	HLA-C16:01	KVLSTNIEI	0.9223	0.9536	1.405	102.19	0.4297	14.11	1/982	1/7748
SNV	Breast	SUPT3H_F325L_8	HLA-C07:02	YRRNGMAL	0.9555	0.8251	0.701	302.12	0.3231	2.39	1/982	1/7748
SNV	Breast	SUPT3H_F325L_8	HLA-C07:02	YRRNGMALL	0.8111	0.8575	0.1136	5.02	0.0189	2.39	1/982	1/7748
SNV	Breast	SYMPK_M1017K_3	HLA-C16:01	FVKNILSRL	0.6108	0.9758	1.0786	151.01	0.5119	18.38	1/982	1/7748
SNV	Breast	ZFP69_G41A_5	HLA-C16:01	KMFEAEALL	0.9683	0.9484	0.7315	162.38	0.5294	4.98	1/982	1/7748
SNV	Breast	DOCK2_T93M_9	HLA-B35:01	IPLAQEVTM	0.9965	0.9666	0.0456	1.78	0.0315	3.85	1/982	1/7748
SNV	Breast	DOCK2_T93M_7	HLA-B35:01	LAQEVTMTL	0.9731	0.9607	0.1561	116.65	0.3232	3.85	1/982	1/7748
SNV	Breast	NBPF9_D533Y_9	HLA-B35:01	HIIPENESY	0.9703	0.8801	0.0922	3.2	0.0613	8.58	1/982	1/7748
SNV	Breast	SPAG5_Y125F_2	HLA-B08:01	NFMVKTIVL	0.9698	0.5039	0.1027	60.75	0.1311	30.61	1/982	1/7748
SNV	Breast	SPAG5_Y125F_9	HLA-B35:01	EAVDPLGNF	0.9852	0.8315	0.2595	19.85	0.1756	30.61	1/982	1/7748
SNV	Breast	SPAG5_Y125F_8	HLA-C04:01	AVDPLGNFM	0.9996	0.8907	0.0496	59.63	0.0593	30.61	1/982	1/7748
SNV	Breast	TLR7_H1038Y_6	HLA-B35:01	LATDNYVAY	0.9877	0.8779	0.0085	1.21	0.014	1.7	1/982	1/7748
SNV	Breast	TLR7_H1038Y_7	HLA-B35:01	ALATDNYVAY	0.8456	0.8923	1.4426	405.71	0.4627	1.7	1/982	1/7748
SNV	Breast	USP31_R584H_8	HLA-B35:01	IPDAESVHL	0.9923	0.837	0.3155	25.29	0.1916	4.64	1/982	1/7748
SNV	Breast	RNF139_D236N_7	HLA-C07:01	KRIRFPNIL	0.9937	0.635	0.0375	66.88	0.0742	102.91	1/982	1/7748
SNV	Breast	RNF139_D236N_5	HLA-C07:01	IRFPNILRV	0.9877	0.6721	0.0425	4.33	0.0087	102.91	1/982	1/7748
SNV	Breast	RNF139_D236N_5	HLA-C07:01	IRFPNILRVF	0.9995	0.5425	0.073	89.75	0.0829	102.91	1/982	1/7748
SNV	Breast	ZNF530_S331Y_2	HLA-C07:01	KYFSHSTNL	0.5136	0.6273	0.336	370.09	0.1535	4.97	1/982	1/7748
SNV	Breast	ABCC8_R298H_6	HLA-B14:02	HAFGRHLVL	0.9962	0.7163	0.0384	17.38	0.009	1.38	1/982	1/7748
SNV	Breast	ABCC8_R298H_7	HLA-B14:02	SHAFGRHLVL	0.9745	0.8917	0.3609	366.59	0.0738	1.38	1/982	1/7748
SNV	Breast	ABCC8_R298H_6	HLA-C06:02	HAFGRHLVL	0.9986	0.9961	0.0231	168.45	0.1222	1.38	1/982	1/7748
SNV	Breast	CAPN1_G435D_4	HLA-C06:02	RRFDRDMETI	0.8963	0.9903	0.2294	126.44	0.1074	83.15	1/982	1/7748
SNV	Breast	CENPE_D1561N_6	HLA-B14:02	HRKAKNSAL	0.988	0.5382	0.007	55.7	0.0215	12.59	1/982	1/7748
SNV	Breast	OLFML2B_A735P_4	HLA-A02:01	LLYPWDNGHQV	0.9981	0.5776	0.6029	14.63	0.1905	23.81	1/982	1/7748
SNV	Breast	RGAG4_F71L_9	HLA-A02:01	VLAEENLEL	0.998	0.5767	0.3398	1.49	0.0206	7.35	1/982	1/7748
SNV	Breast	RGAG4_F71L_9	HLA-C08:02	VLAEENLEL	0.9973	0.9852	0.3146	67.17	0.0556	7.35	1/982	1/7748
SNV	Breast	SORD_M66V_7	HLA-A02:01	FIVKKPVVL	0.928	0.6781	0.65	291.17	0.5678	49.97	1/982	1/7748
SNV	Breast	SOS1_H616Y_9	HLA-A02:01	KLIERLTYYM	0.9965	0.5419	1.0429	95.87	0.3861	20.26	1/982	2/7748
SNV	Breast	AQR_I1070T_6	HLA-B15:03	AQILETETF	0.8133	0.9396	0.0121	1.5	0.013	15.15	1/982	1/7748
SNV	Breast	MSANTD3_S58F_3	HLA-B15:03	YNFQPSVSL	0.9223	0.8272	0.3986	45.3	0.4034	10.57	1/982	1/7748
SNV	Breast	TARS_E147K_4	HLA-B15:03	FEDKEAQAVY	0.844	0.7025	1.4391	262.96	0.7853	54.67	1/982	1/7748
SNV	Breast	ZNF91_G1102A_5	HLA-B15:03	RLHTAEKPY	0.5849	0.8549	0.2384	28.9	0.3202	6.79	1/982	1/7748
SNV	Breast	GSAP_L142V_9	HLA-B35:01	HPVNNVKVV	0.7903	0.829	0.5334	474.93	0.4825	3.4	1/982	1/7748
SNV	Breast	IREB2_D943N_5	HLA-C04:01	SFEDNVEITL	0.9988	0.6896	0.0251	104.46	0.0751	18.75	1/982	1/7748
SNV	Breast	ARFGEF1_S673L_3	HLA-B15:01	TSLSGIGSY	0.9918	0.838	0.2138	41.63	0.1985	44.73	1/982	1/7748
SNV	Breast	CRIM1_C354Y_6	HLA-C07:01	FRMDNYRF	0.9999	0.6672	0.8103	203.56	0.1165	33.9	1/982	1/7748
SNV	Breast	F2RL2_E50K_3	HLA-B18:01	FEKFPFSAL	0.9517	0.9819	0.0824	76.68	0.1383	29.33	1/982	1/7748
SNV	Breast	GMEB1_M159I_2	HLA-B15:01	KIMDSGQIDF	0.9993	0.7291	0.4629	37.87	0.1902	10.48	1/982	1/7748
SNV	Breast	GMEB1_M159I_2	HLA-B15:01	KIMDSGQIDFY	0.9996	0.796	0.4353	484.93	0.5144	10.48	1/982	1/7748
SNV	Breast	HOXA5_I228V_5	HLA-C07:01	RRIEVAHAL	0.999	0.7245	0.0013	4.37	0.0087	4.09	1/982	1/7748
SNV	Breast	ILF3_H37D_4	HLA-C12:03	MVSDTERAL	0.994	0.9686	0.1747	27.98	0.2632	74.79	1/982	1/7748
SNV	Breast	MED25_F71L_6	HLA-C12:03	YSLVVLNTV	0.7571	0.9868	0.1536	115.73	0.5612	51.86	1/982	1/7748
SNV	Breast	MTHFD1L_G759S_2	HLA-B15:01	ASVPLKKEY	0.9768	0.8179	0.4726	43.05	0.2017	7.88	1/982	1/7748
SNV	Breast	OCLN_P292T_8	HLA-A02:01	HIYDEQPTNV	0.9889	0.6311	0.568	131.06	0.435	4.54	1/982	1/7748
SNV	Breast	PCDHB14_V460I_1	HLA-C07:01	IRENNSPAL	0.8164	0.6609	0.3182	298.31	0.1371	4.79	1/982	1/7748
SNV	Breast	PIK3CB_N553S_1	HLA-B18:01	SEMDLIWTL	0.9576	0.9596	0.0144	1.67	0.0059	23.92	1/982	1/7748
SNV	Breast	TANC1_L1826V_8	HLA-B15:01	ITKTVSHVY	0.9997	0.6514	0.2325	6.3	0.0598	8.88	1/982	1/7748
SNV	Breast	TANC1_L1826V_9	HLA-B15:01	RITKTVSHVY	0.9998	0.6811	0.6657	126.49	0.3115	8.88	1/982	1/7748
SNV	Breast	TANC1_L1826V_8	HLA-C12:03	ITKTVSHVY	0.8316	0.9194	0.283	54.71	0.3839	8.88	1/982	2/7748
SNV	Breast	TGFBRAP1_H405Y_9	HLA-B15:01	FTRSHPPLY	0.9969	0.8826	0.0902	18.76	0.1364	22.27	1/982	1/7748
SNV	Breast	TGFBRAP1_H405Y_7	HLA-B15:01	RSHPPLYEY	0.9996	0.9068	0.1619	4.42	0.0454	22.27	1/982	1/7748
SNV	Breast	TGFBRAP1_H405Y_1	HLA-B18:01	YEYADLNQL	0.9727	0.931	0.1389	8.19	0.0551	22.27	1/982	1/7748
SNV	Breast	TGFBRAP1_H405Y_7	HLA-C12:03	RSHPPLYEY	0.7681	0.9543	0.0836	6.41	0.0796	22.27	1/982	1/7748
SNV	Breast	LIG1_I854M_5	HLA-A02:01	SLSPMYPAA	0.9841	0.6827	0.1676	67.42	0.3408	16.23	1/982	1/7748
SNV	Breast	MAN2B2_D804G_9	HLA-A02:01	RLWNNFDWGL	0.9911	0.666	0.3119	115.27	0.413	17.07	1/982	1/7748
SNV	Breast	SLC35D1_P230R_5	HLA-B08:01	FMILRTLAI	0.9978	0.9205	0.0032	329.17	0.2822	19.42	1/982	1/7748
SNV	Breast	SLC35D1_P230R_2	HLA-C07:01	LRTLAIAYF	0.9974	0.5527	0.1515	271.34	0.1297	19.42	1/982	1/7748
SNV	Breast	SLC44A5_Q132E_8	HLA-A02:01	FLTYVEMEL	0.9939	0.5606	0.2414	4.93	0.1032	2.2	1/982	1/7748
SNV	Breast	ZNF365_L421P_7	HLA-C07:01	SRNISLPTL	0.999	0.8721	0.0313	25.39	0.0438	6.23	1/982	1/7748
SNV	Breast	AQP5_S31W_5	HLA-B58:01	FGLGWALKW	0.9971	0.9952	0.0361	39.13	0.2707	348.07	1/982	1/7748
SNV	Breast	DGKA_N408S_9	HLA-A02:01	ILNPRQVFSL	0.9756	0.6663	1.145	148.09	0.4559	13.86	1/982	1/7748
SNV	Breast	GPSM2_A324T_7	HLA-B58:01	RIGEGRTCW	0.9837	0.992	0.2442	56.74	0.3183	10.85	1/982	1/7748
SNV	Breast	ITGA2_Q735H_1	HLA-B58:01	HSCPEHIIY	0.9754	0.6682	0.1843	120.51	0.4188	10.32	1/982	1/7748
SNV	Breast	KIAA1109_D3396Y_3	HLA-B58:01	FAYGFETSW	0.9991	0.9971	0.0019	1.79	0.0256	21.23	1/982	1/7748
SNV	Breast	KIAA1109_D3396Y_4	HLA-B58:01	RFAYGFETSW	0.9619	0.997	0.9695	2.33	0.0379	21.23	1/982	1/7748
SNV	Breast	KIAA2022_D497H_6	HLA-A02:01	YLYDVHSL	0.9974	0.6003	1.128	2.5	0.0555	4.4	1/982	1/7748
SNV	Breast	MACC1_E659K_4	HLA-B58:01	LVSKKVYDW	0.9949	0.7866	0.0693	17.9	0.1928	10.04	1/982	1/7748
SNV	Breast	MYLK_E891Q_5	HLA-C07:01	IRQQQVEQL	0.9971	0.6769	0.0621	112.54	0.0922	22.78	1/982	1/7748
SNV	Breast	NRK_S1349R_6	HLA-B58:01	KSFDERTAI	0.9917	0.8777	0.2104	161.78	0.461	26.39	1/982	1/7748
SNV	Breast	PLRG1_I200M_3	HLA-B58:01	RVMSGHLGW	0.9992	0.9723	0.0158	1.22	0.0082	37.52	1/982	1/7748
SNV	Breast	PTPRU_E333K_3	HLA-B08:01	WAKVHAVSL	0.9986	0.659	0.0037	8.9	0.036	40.82	1/982	1/7748
SNV	Breast	SARDH_C235Y_9	HLA-B58:01	RGAQVIENY	0.917	0.9377	0.8879	21.43	0.2105	4.3	1/982	1/7748
SNV	Breast	SARDH_C235Y_1	HLA-B58:01	YPVTGIRVW	0.6765	0.8974	0.503	402.15	0.6136	4.3	1/982	1/7748
SNV	Breast	SF3B3_S242L_9	HLA-A02:01	FLITVPGGL	0.9758	0.5188	0.1204	25.79	0.2389	78.78	1/982	1/7748
SNV	Breast	SF3B3_S242L_2	HLA-A02:01	GLDGPSGVLI	0.9402	0.7763	0.9689	431	0.6427	78.78	1/982	1/7748
SNV	Breast	TARS_R367K_4	HLA-C07:01	YRKKGFQEV	0.9057	0.6887	0.0949	57.95	0.0704	110.86	1/982	1/7748
SNV	Breast	WWC1_S525F_3	HLA-A02:01	SLFGTPKSM	0.8071	0.8553	0.8283	489.46	0.6708	22.8	1/982	1/7748
SNV	Breast	ZBTB46_Q258H_4	HLA-B58:01	FSEHSAGDAW	0.9891	0.9479	0.2295	95.13	0.3862	12.36	1/982	1/7748
SNV	Breast	ZNF70_S349F_7	HLA-B58:01	KAFSQSFSL	0.9937	0.8482	0.0405	22.74	0.2159	16.34	1/982	1/7748
SNV	Breast	EPB41L2_E372K_3	HLA-B08:01	ELKEKVAEL	0.9996	0.5822	0.0135	1.79	0.005	8.62	1/982	1/7748
SNV	Breast	MUT_I463M_1	HLA-B08:01	MPKLRIEEC	0.9897	0.5204	0.1401	452.15	0.3201	13.68	1/982	1/7748
SNV	Breast	NIPBL_H7L_7	HLA-B08:01	MPLVPITTL	0.9187	0.9303	0.0508	102.94	0.1706	12.01	1/982	1/7748
SNV	Breast	CLYBL_R226W_3	HLA-C03:03	YAWQKIVVI	0.9994	0.9725	0.0578	4.87	0.0486	5.99	1/982	1/7748
SNV	Breast	IRAK3_F470V_2	HLA-C03:03	LVLENVPSI	0.9953	0.9936	0.3315	29.61	0.1651	2.4	1/982	1/7748
SNV	Breast	KIFC3_T755M_10	HLA-B35:01	SPVEKNTSEM	0.9714	0.8962	0.5189	153.88	0.3516	3.4	1/982	1/7748
SNV	Breast	OCRL_M158I_9	HLA-C04:01	GFEDNFSSI	0.9607	0.6663	0.0925	208.26	0.103	51.95	1/982	1/7748
SNV	Breast	PIK3CA_H1047L_2	HLA-A03:01	ALHGGWTTK	0.9988	0.5947	0.0127	2.89	0.0245	14.5	3/982	7/7748
SNV	Breast	RNF113A_Q160H_7	HLA-B15:01	RGINNYHKY	0.9647	0.8764	0.8445	239.36	0.3948	28	1/982	1/7748
SNV	Breast	SMC1A_R295Q_6	HLA-B15:01	ELNQKQPQY	0.9452	0.5529	0.7765	460.69	0.5049	69.48	1/982	1/7748
SNV	Breast	UBA1_M584L_4	HLA-B15:01	RMYLDRRCVY	0.9989	0.7922	0.3036	71.56	0.2557	333.23	1/982	1/7748
SNV	Breast	VPS13B_V3856I_2	HLA-C03:03	YIWKMLQSL	0.9952	0.9881	0.2825	281.59	0.4097	15.93	1/982	1/7748
SNV	Breast	ZDHHC3_S206N_1	HLA-C03:03	NSFSPPTTV	0.9956	0.948	0.0804	22.94	0.1496	27.5	1/982	1/7748
SNV	Breast	ARHGEF11_R1412H_4	HLA-B35:03	RPSHSPPSL	0.9389	0.8592	0.092	293.33	0.1512	31.69	1/982	1/7748
SNV	Breast	ATR_M2540V_7	HLA-C12:03	RACEVTVRL	0.9232	0.9686	0.2699	80.5	0.4687	14.42	1/982	1/7748
SNV	Breast	CRMP1_S427L_7	HLA-C12:03	TAKSHKLAV	0.8717	0.9467	0.1782	277.21	0.8512	1.41	1/982	1/7748
SNV	Breast	CRMP1_S427L_5	HLA-C12:03	KSHKLAVEY	0.581	0.9557	0.1646	113.29	0.5555	1.41	1/982	1/7748
SNV	Breast	GINS3_P41R_4	HLA-C12:03	TAMRRLGAF	0.7633	0.9867	0.2116	21.88	0.2231	5.06	1/982	1/7748
SNV	Breast	NAALADL2_S341R_5	HLA-C12:03	TVNPRHDTF	0.713	0.9193	0.4146	14.27	0.1676	17.51	1/982	1/7748
SNV	Breast	OR4F15_D70N_8	HLA-C12:03	LANLSIINM	0.9823	0.9654	0.2609	51.48	0.3733	2.16	1/982	1/7748
SNV	Breast	PPM1E_A577V_9	HLA-C04:01	YLDLTQIEV	0.9997	0.9766	0.0765	59.77	0.0594	4.02	1/982	1/7748
SNV	Breast	PPM1E_A577V_1	HLA-C12:03	VSKPHSAQF	0.9848	0.9528	0.0638	14.01	0.1649	4.02	1/982	1/7748
SNV	Breast	RBM19_R564Q_6	HLA-C12:03	LVQEVQRFL	0.9508	0.9818	0.7398	491.13	1.0676	17.14	1/982	1/7748
SNV	Breast	SATB2_R618H_1	HLA-C12:03	HTKISLEAL	0.9919	0.9723	0.3889	174.92	0.6849	4.89	1/982	1/7748
SNV	Breast	ADAM19_D219H_5	HLA-C07:02	YLVAHYLEF	0.8976	0.9816	0.5212	340.67	0.3408	3.59	1/982	1/7748
SNV	Breast	PEAK1_R1636W_4	HLA-A24:02	PYSWGLQQL	0.988	0.6984	0.227	5.78	0.161	3.89	1/982	1/7748
SNV	Breast	PEAK1_R1636W_7	HLA-C07:02	FRSPYSWGL	0.8581	0.9581	0.0149	5.34	0.0204	3.89	1/982	1/7748
SNV	Breast	HRC_P23H_1	HLA-B07:02	HPAMTQQL	0.99	0.5514	0.2621	81.02	0.2468	8.79	1/982	1/7748
SNV	Breast	IQGAP3_Q1492H_7	HLA-A02:01	KLQATLHGL	0.9754	0.6248	0.1134	32.69	0.2604	9.48	1/982	1/7748
SNV	Breast	LETMD1_A289T_5	HLA-C05:01	QLDKTLAKL	0.9999	0.8946	0.032	8.7	0.0799	18.89	1/982	1/7748
SNV	Breast	LRRN2_R322Q_6	HLA-C05:01	ITNNPQLSF	0.9964	0.9405	0.8451	49.33	0.1695	1.41	1/982	1/7748
SNV	Breast	LRRN2_R322Q_9	HLA-C05:01	KLDITNNPQL	1	0.9189	0.0755	274.38	0.3275	1.41	1/982	1/7748
SNV	Breast	SCFD2_S621C_5	HLA-B07:02	RPHPCDYPL	0.9995	0.585	0.0095	7.24	0.0915	15.34	1/982	1/7748
SNV	Breast	SCFD2_S621C_5	HLA-B07:02	RPHPCDYPLL	0.9922	0.5085	0.1218	82.76	0.2486	15.34	1/982	1/7748
SNV	Breast	STAT4_G509S_1	HLA-A02:01	SLNSDQLHML	0.9564	0.7075	0.702	91.37	0.3799	1.24	1/982	1/7748
SNV	Breast	TMEM18_C43S_1	HLA-A02:01	SLSSRSYRL	0.873	0.6567	0.3222	357.94	0.6017	12.28	1/982	1/7748
SNV	Breast	TP53_I195T_9	HLA-A02:01	GLAPPQHLTRV	0.9944	0.7346	0.9333	232.61	0.5314	45.6	2/982	4/7748
SNV	Breast	ACVR1B_E412D_5	HLA-A31:01	LVYWDIARR	0.9593	0.6438	0.2473	144.01	0.2582	22.84	1/982	1/7748
SNV	Breast	ACVR1B_M304I_6	HLA-C14:02	VTIEGIIKL	0.9794	0.9496	0.7554	193.99	0.6811	22.84	1/982	1/7748
SNV	Breast	ACVR1B_M304I_6	HLA-C03:04	VTIEGIIKL	0.9993	0.9892	0.041	4.74	0.0473	22.84	1/982	1/7748
SNV	Breast	AIM1_G521A_2	HLA-C03:04	LAGETTPPL	0.9987	0.9949	0.0424	37.85	0.1809	30.6	1/982	1/7748
SNV	Breast	ANKRD36_E1239Q_6	HLA-C14:02	MFDQIQEKF	0.9909	0.9758	0.0478	9.55	0.1418	1.54	1/982	1/7748
SNV	Breast	ANKRD36_E1239Q_3	HLA-C14:02	QIQEKFTSL	0.9891	0.983	0.4886	210.34	0.7068	1.54	1/982	1/7748
SNV	Breast	ARID1B_R2194K_1	HLA-C14:02	KVDENRSEF	0.9994	0.9033	0.342	15	0.1789	28.18	1/982	1/7748
SNV	Breast	ARID1B_R2194K_1	HLA-C03:04	KVDENRSEF	0.9936	0.9846	0.2437	73.09	0.2418	28.18	1/982	1/7748
SNV	Breast	BANK1_L523M_7	HLA-A31:01	VANAFQMER	0.934	0.8544	0.1318	20.12	0.0856	2.33	1/982	1/7748
SNV	Breast	CD1E_P221R_2	HLA-C14:02	SRGPGRLQL	0.5523	0.9394	1.3075	99.27	0.5007	2.58	1/982	1/7748
SNV	Breast	DNAH2_L1075V_3	HLA-C03:04	VSVQLVDAL	0.9991	0.973	0.3025	243.3	0.3882	1.46	1/982	1/7748
SNV	Breast	EPS8L1_G114S_6	HLA-A31:01	AVMPPSRSR	0.9923	0.8119	0.1628	3.54	0.0132	27.64	1/982	1/7748
SNV	Breast	FAM83F_S491Y_1	HLA-C03:04	YAKPSNCVI	0.995	0.9686	0.0494	39.57	0.1841	4.72	1/982	1/7748
SNV	Breast	G3BP1_L259V_1	HLA-B51:01	VPPSGAVPV	0.9362	0.6741	0.0435	90.43	0.223	64.98	1/982	1/7748
SNV	Breast	GREB1_F79L_7	HLA-C14:02	NGPPNPLQL	0.9733	0.9268	0.5641	310.08	0.8723	1.12	1/982	1/7748
SNV	Breast	HIST1H2BC_S125F_9	HLA-C03:04	KAVTKYTSF	0.983	0.9908	0.3901	234.33	0.383	6.37	1/982	1/7748
SNV	Breast	NOTCH4_E60Q_5	HLA-A24:02	GFLGQTCQF	0.9898	0.6711	0.1356	105.19	0.4598	3.81	1/982	1/7748
SNV	Breast	PHACTR1_E511K_7	HLA-C14:02	SQRPTVKEL	0.983	0.9683	0.9732	287.04	0.8406	1.4	1/982	1/7748
SNV	Breast	PUM1_P761L_7	HLA-C14:02	HSQTPPLSL	0.9972	0.9655	0.5014	104.32	0.5134	71.22	1/982	1/7748
SNV	Breast	PUM1_P761L_7	HLA-C03:04	HSQTPPLSL	0.9996	0.9775	0.0457	26.3	0.1579	71.22	1/982	1/7748
SNV	Breast	RANBP17_E920K_4	HLA-C14:02	SISKGLTTL	0.9784	0.959	0.4035	108.57	0.5236	2.17	1/982	1/7748
SNV	Breast	RANBP17_E920K_4	HLA-C03:04	SISKGLTTL	0.9975	0.9869	0.0424	38.74	0.1825	2.17	1/982	1/7748
SNV	Breast	SIGLEC7_L272V_8	HLA-A31:01	SVLEGQSVR	0.9208	0.6481	0.3411	187	0.2868	5.5	1/982	1/7748
SNV	Breast	SLC35B2_M158I_3	HLA-C14:02	VLINRVLAL	0.8235	0.9486	0.1812	27.47	0.253	80.61	1/982	1/7748
SNV	Breast	SLC35B2_M158I_3	HLA-C03:04	VLINRVLAL	0.9954	0.9693	0.4431	55.57	0.2129	80.61	1/982	1/7748
SNV	Breast	SOX11_D115Y_6	HLA-C14:02	MADYPYYKY	0.8286	0.9579	1.5651	192.07	0.6783	101.66	1/982	1/7748
SNV	Breast	SOX13_E182Q_3	HLA-C14:02	LFQKQQQQM	0.5245	0.9827	0.0524	26.83	0.2493	30.06	1/982	1/7748
SNV	Breast	TBC1D25_E279K_5	HLA-C14:02	RANPKDLEF	0.9765	0.9592	0.342	30.34	0.2695	16.86	1/982	1/7748
SNV	Breast	TBC1D25_E279K_5	HLA-C03:04	RANPKDLEF	0.9244	0.989	0.4136	14.62	0.1095	16.86	1/982	1/7748
SNV	Breast	THRSP_L124P_6	HLA-C14:02	SLHHIPMHL	0.6627	0.9252	0.0606	39.55	0.3137	19.81	1/982	1/7748
SNV	Breast	THRSP_L124P_8	HLA-C03:04	FSSLHHIPM	0.9992	0.9749	0.0158	270.09	0.4029	19.81	1/982	1/7748
SNV	Breast	TIGIT_S34F_1	HLA-C03:04	FAEKGGSII	0.9906	0.9861	0.1854	81.56	0.2533	10.55	1/982	1/7748
SNV	Breast	TPM3_D67V_2	HLA-C03:04	KVAQEKLEL	0.9955	0.9861	0.4206	495.28	0.5012	445.84	1/982	1/7748
SNV	Breast	TRIM23_Q473E_5	HLA-C14:02	YLNTEAVVF	0.7753	0.9456	0.2343	89.45	0.4751	7.54	1/982	1/7748
SNV	Breast	TRIM23_Q473E_6	HLA-C14:02	YYLNTEAVVF	0.9136	0.9626	0.415	63.98	0.3952	7.54	1/982	1/7748
SNV	Breast	TRIM23_Q473E_5	HLA-C03:04	YLNTEAVVF	0.9675	0.9698	0.8354	218.18	0.3732	7.54	1/982	1/7748
SNV	Breast	TSNARE1_E469A_6	HLA-A31:01	ASSHAAAAR	0.9704	0.7833	0.1486	119.38	0.2346	6.68	1/982	1/7748
SNV	Breast	TSNARE1_E469A_3	HLA-C14:02	HAAAARQLL	0.9963	0.9758	0.6885	218.08	0.7227	6.68	1/982	1/7748
SNV	Breast	TSNARE1_E469A_3	HLA-C03:04	HAAAARQLL	0.9998	0.9828	0.1275	16.77	0.1232	6.68	1/982	1/7748
SNV	Breast	TTC37_R374P_7	HLA-C03:04	SSEEAIPTL	0.9909	0.9967	0.0816	84.56	0.2571	38.88	1/982	1/7748
SNV	Breast	UVRAG_P92S_4	HLA-C14:02	SLNSTWRSL	0.7269	0.9877	1.296	303.14	0.863	12.75	1/982	1/7748
SNV	Breast	XIRP1_L912V_8	HLA-B51:01	VALTAYSV	0.9997	0.814	0.4118	362.17	0.3905	10.02	1/982	1/7748
SNV	Breast	XIRP1_L912V_5	HLA-C03:04	TAYSVQPRL	0.9997	0.9848	0.3653	6.95	0.0628	10.02	1/982	1/7748
SNV	Breast	ZMYM4_L1283F_5	HLA-C14:02	TFAEFSLGL	0.5772	0.9733	0.2054	6.78	0.1105	56.22	1/982	1/7748
SNV	Breast	FUK_M318I_10	HLA-B13:02	RELRDQPLTI	0.9933	0.8882	0.1775	149.31	0.0648	11.23	1/982	1/7748
SNV	Breast	GTPBP4_D17Y_9	HLA-B57:03	ITVVPSAKY	0.7466	0.9751	0.8658	279.7	0.4846	32.83	1/982	1/7748
SNV	Breast	GTPBP4_D17Y_8	HLA-B57:03	TVVPSAKYF	0.8945	0.9795	0.4666	31.56	0.1797	32.83	1/982	1/7748
SNV	Breast	GTPBP4_D17Y_9	HLA-B57:03	ITVVPSAKYF	0.998	0.9717	0.2169	69.75	0.2722	32.83	1/982	1/7748
SNV	Breast	PDHB_N316T_9	HLA-B57:03	RIMEGPAFTF	0.9993	0.9959	0.3319	136.5	0.367	22.04	1/982	1/7748
SNV	Breast	PNPLA8_S140W_3	HLA-A30:01	KVWDSGWLK	0.9973	0.9749	0.0125	309.34	0.1202	15.26	1/982	1/7748
SNV	Breast	PNPLA8_S140W_9	HLA-B57:03	SSQILRKVW	0.9754	0.9935	0.2169	12.39	0.1151	15.26	1/982	1/7748
SNV	Breast	RAB3GAP2_L616S_5	HLA-B57:03	ITQTSMDTL	0.5841	0.9044	0.583	466.64	0.59	16.29	1/982	1/7748
SNV	Breast	RAB3GAP2_L616S_8	HLA-C07:01	LRNITQTSM	0.9955	0.7561	0.073	70.53	0.0756	16.29	1/982	1/7748
SNV	Breast	REXO2_W179C_2	HLA-B57:03	RCYPEEYEF	0.9519	0.9959	0.2562	34.53	0.1873	14.45	1/982	1/7748
SNV	Breast	SRGN_R85H_7	HLA-B57:03	RIQDLNHIF	0.9015	0.9353	0.2261	88.32	0.3036	88.18	1/982	1/7748
SNV	Breast	TTC9C_G115R_3	HLA-A30:01	RARVAFFHL	0.994	0.904	0.0131	304.47	0.1192	24.37	1/982	1/7748
SNV	Breast	TTC9C_G115R_4	HLA-C06:02	YRARVAFF	0.9703	0.9915	1.1061	215.64	0.136	24.37	1/982	1/7748
SNV	Breast	AMPH_P601T_1	HLA-C16:01	TAMGAADQL	0.7546	0.9898	0.2191	72.73	0.3601	2.09	1/982	1/7748
SNV	Breast	APOOL_S203Y_4	HLA-A02:01	KLGYSSEIEV	0.9761	0.7995	1.4579	55.95	0.3169	28.75	1/982	1/7748
SNV	Breast	GRB10_P448L_6	HLA-A02:01	RVIENLAEA	0.9854	0.5972	0.5313	34.38	0.2653	24.07	1/982	1/7748
SNV	Breast	GRB10_P448L_1	HLA-C16:01	LAEAQSAAL	0.9068	0.989	0.4145	312.06	0.7048	24.07	1/982	1/7748
SNV	Breast	KIAA1549L_V532M_9	HLA-C16:01	YSPTTRHSM	0.9394	0.9687	0.0314	25.49	0.193	4.52	1/982	1/7748
SNV	Breast	KIAA1549L_V532M_2	HLA-C16:01	SMSHPQLQL	0.942	0.9724	0.3891	306.64	0.6998	4.52	1/982	1/7748
SNV	Breast	MBD3_N87S_7	HLA-C07:01	VRYDSSSQV	0.9259	0.6435	0.1144	25.02	0.0434	27.18	1/982	1/7748
SNV	Breast	MTO1_G431E_2	HLA-B44:03	AEQINGTTGY	0.9906	0.9555	0.0915	1.35	0.0129	7.05	1/982	1/7748
SNV	Breast	PHKA2_A466V_2	HLA-C16:01	IVDIHPIQV	0.868	0.9714	0.4239	180.2	0.5545	13.58	1/982	1/7748
SNV	Breast	PTPRD_S1683F_6	HLA-A02:01	IMPYEFTRV	0.9946	0.5844	0.4173	107.55	0.4012	4.22	1/982	1/7748
SNV	Breast	PTPRD_S1683F_9	HLA-C16:01	LVNIMPYEF	0.8049	0.9663	0.8582	232.72	0.6194	4.22	1/982	1/7748
SNV	Breast	EIF3B_E755G_4	HLA-A32:01	TMMGDFRKY	0.7643	0.8676	0.3001	278.47	0.229	98.39	1/982	1/7748
SNV	Breast	FHIT_S22P_8	HLA-A24:02	VFLKTELPF	0.9904	0.5238	0.0354	14.02	0.2442	4.93	1/982	1/7748
SNV	Breast	FHIT_S22P_6	HLA-B39:06	LKTELPFAL	0.9933	0.8656	0.5952	33.69	0.1189	4.93	1/982	1/7748
SNV	Breast	NCAPD3_R1371Q_4	HLA-B39:06	HRSQSLGVL	0.9964	0.8026	0.185	37.58	0.1238	14.18	1/982	1/7748
SNV	Breast	NCAPD3_R1371Q_4	HLA-C07:02	HRSQSLGVL	0.8025	0.9568	0.2294	399.06	0.3642	14.18	1/982	1/7748
SNV	Breast	NCAPD3_R1371Q_4	HLA-C07:01	HRSQSLGVL	0.9946	0.7377	0.1251	311.75	0.1405	14.18	1/982	1/7748
SNV	Breast	PCDHB4_E461K_3	HLA-C07:02	VRKNNSPAL	0.7776	0.9656	0.2126	51.82	0.136	3.82	1/982	1/7748
SNV	Breast	PCDHB4_E461K_3	HLA-C07:01	VRKNNSPAL	0.9685	0.8341	0.1363	170.6	0.1099	3.82	1/982	1/7748
SNV	Breast	WLS_R141H_2	HLA-B39:06	YHDDAFAEW	0.9226	0.9148	1.84	65.22	0.1634	128.86	1/982	1/7748
SNV	Breast	WLS_R141H_2	HLA-C07:02	YHDDAFAEW	0.6192	0.9559	0.5032	309.87	0.3268	128.86	1/982	1/7748
SNV	Breast	WWP2_T627I_8	HLA-C07:02	KFIDTGFIL	0.8467	0.8937	0.3576	26.41	0.091	17.4	1/982	1/7748
SNV	Breast	HOXC4_P227L_3	HLA-B07:02	APLAGAAPSTL	0.9999	0.5499	0.0736	45.21	0.1983	60.05	1/982	1/7748
SNV	Breast	HOXC4_P227L_1	HLA-C03:03	LAGAAPSTL	0.9995	0.9875	0.0504	9.14	0.0767	60.05	1/982	1/7748
SNV	Breast	BCL6_N21K_5	HLA-B08:01	DVLLKLNRL	0.985	0.5743	0.2626	36.03	0.0941	85.87	1/982	1/7748
SNV	Breast	IFT81_V127I_9	HLA-C07:01	ARFLIKLEI	0.9984	0.6158	0.1086	44.01	0.0608	17.19	1/982	1/7748
SNV	Breast	PCSK6_T522M_7	HLA-B08:01	VQVLRTMAL	0.9528	0.6542	0.0306	112.31	0.178	13.38	1/982	1/7748
SNV	Breast	RRP1_P226L_2	HLA-A02:01	ALLAIEDLL	0.9798	0.5008	0.3756	16.78	0.2025	26.77	1/982	1/7748
SNV	Breast	TUBE1_N260D_4	HLA-A02:01	AMNDIVANL	0.996	0.7325	0.2085	1.35	0.0153	8.71	1/982	1/7748
SNV	Breast	TUBE1_N260D_4	HLA-A02:01	AMNDIVANLL	0.9881	0.6307	0.7786	39.15	0.278	8.71	1/982	1/7748
SNV	Breast	TUBE1_N260D_4	HLA-A02:01	AMNDIVANLLL	0.9947	0.5495	0.9071	380.18	0.615	8.71	1/982	1/7748
SNV	Breast	ZFHX4_N1659K_3	HLA-B08:01	AVKSKDTHL	0.9916	0.5133	0.1523	155.06	0.2109	2.11	1/982	1/7748
SNV	Breast	BCORL1_P336L_9	HLA-A02:01	LVLAPVPTL	0.9581	0.6729	0.5218	104.05	0.3966	10.54	1/982	1/7748
SNV	Breast	BCORL1_P336L_8	HLA-A02:01	VLAPVPTLV	0.9982	0.6916	0.0442	1.25	0.0129	10.54	1/982	1/7748
SNV	Breast	BCORL1_P336L_10	HLA-A02:01	TLVLAPVPTL	0.9619	0.6997	0.9966	158.94	0.468	10.54	1/982	1/7748
SNV	Breast	BCORL1_P336L_9	HLA-A02:01	LVLAPVPTLV	0.9746	0.5798	0.5996	35.16	0.2675	10.54	1/982	1/7748
SNV	Breast	BCORL1_P336L_8	HLA-A02:01	VLAPVPTLVL	0.9866	0.7494	0.7316	39.99	0.28	10.54	1/982	1/7748
SNV	Breast	BCORL1_P336L_8	HLA-C05:01	VLAPVPTLV	0.9974	0.9929	0.4176	4.66	0.0534	10.54	1/982	1/7748
SNV	Breast	BCORL1_P336L_7	HLA-C05:01	LAPVPTLVL	0.8027	0.9934	0.1741	445.57	0.3888	10.54	1/982	1/7748
SNV	Breast	BCORL1_P336L_8	HLA-C05:01	VLAPVPTLVL	0.9988	0.9937	0.9846	431.86	0.3849	10.54	1/982	1/7748
SNV	Breast	BRWD3_P308R_6	HLA-A30:01	KFRDRRVKF	0.5939	0.6614	1.6334	469.54	0.169	9.78	1/982	1/7748
SNV	Breast	CBX8_G216D_3	HLA-C05:01	PLDEPSAGL	0.9998	0.8349	0.1133	44.86	0.1637	21.72	1/982	1/7748
SNV	Breast	KIAA0368_G860V_9	HLA-B13:02	KERAIQTLV	0.9897	0.6442	0.1986	316.84	0.1125	90.31	1/982	1/7748
SNV	Breast	NID2_V984M_2	HLA-A02:01	CMDPDGHEV	0.991	0.789	0.365	24.87	0.2358	19.21	1/982	1/7748
SNV	Breast	NID2_V984M_3	HLA-A02:01	WCMDPDGHEV	0.768	0.7789	1.4208	117.13	0.4158	19.21	1/982	1/7748
SNV	Breast	NID2_V984M_2	HLA-C05:01	CMDPDGHEV	0.9999	0.9848	0.0147	6.09	0.0662	19.21	1/982	1/7748
SNV	Breast	NID2_V984M_3	HLA-C05:01	WCMDPDGHEV	0.9985	0.9903	0.7831	102.79	0.2232	19.21	1/982	1/7748
SNV	Breast	NUAK1_P443S_4	HLA-A02:01	VLLSSSPEA	0.9811	0.7445	0.4301	95.66	0.3858	12.75	1/982	1/7748
SNV	Breast	XRRA1_I6S_4	HLA-A02:01	KLDDGKPYL	0.9959	0.5637	0.2256	1.31	0.0142	8.47	3/982	3/7748
SNV	Breast	XRRA1_I6S_4	HLA-A02:01	KLDDGKPYL	0.9959	0.5637	0.2256	1.31	0.0142	8.47	3/982	3/7748
SNV	Breast	XRRA1_I6S_4	HLA-A02:01	KLDDGKPYL	0.9959	0.5637	0.2256	1.31	0.0142	8.47	3/982	3/7748
SNV	Breast	XRRA1_I6S_4	HLA-C05:01	KLDDGKPYL	0.9999	0.8964	0.0039	1.13	0.0048	8.47	3/982	3/7748
SNV	Breast	XRRA1_I6S_4	HLA-C05:01	KLDDGKPYL	0.9999	0.8964	0.0039	1.13	0.0048	8.47	3/982	3/7748
SNV	Breast	XRRA1_I6S_4	HLA-C05:01	KLDDGKPYL	0.9999	0.8964	0.0039	1.13	0.0048	8.47	3/982	3/7748
SNV	Breast	AKT1_E17K_4	HLA-B27:05	KRGKYIKTW	0.9971	0.9208	0.6419	408.5	0.575	51.85	2/982	3/7748
SNV	Breast	DNAH12_Q1761R_2	HLA-B27:05	TRCTFIKFF	0.9992	0.6903	0.7502	34.19	0.2942	1.27	1/982	1/7748
SNV	Breast	GPAM_L188M_2	HLA-A03:02	RMTGWVLLK	0.9989	0.6556	0.004	4.79	0.0169	4.31	1/982	1/7748
SNV	Breast	GPAM_L188M_3	HLA-B27:05	IRMTGWVLL	0.9998	0.795	0.252	2	0.0624	4.31	1/982	1/7748
SNV	Breast	GPAM_L188M_3	HLA-B27:05	IRMTGWVLLK	0.9999	0.8046	0.5276	36.44	0.2997	4.31	1/982	1/7748
SNV	Breast	GPAM_L188M_9	HLA-C15:02	TVSPAMIRM	0.9885	0.8204	0.5149	19.18	0.1419	4.31	1/982	1/7748
SNV	Breast	SHKBP1_E414D_1	HLA-A26:01	DTVGSGPQL	0.9874	0.6514	0.1523	193.29	0.1665	14.5	1/982	1/7748
SNV	Breast	SLC35A2_W272L_5	HLA-B51:01	TPAVLGVV	0.9929	0.8008	0.2213	307.16	0.3672	18.77	1/982	1/7748
SNV	Breast	SLC4A3_R979H_1	HLA-B51:01	HPFPPWMM	0.9875	0.5866	0.2296	39.67	0.1594	2.37	1/982	1/7748
SNV	Breast	SLC4A3_R979H_1	HLA-B51:01	HPFPPWMMV	0.9961	0.8013	0.0073	1.59	0.0062	2.37	1/982	1/7748
SNV	Breast	SLC4A3_R979H_3	HLA-C15:02	SAHPFPPWM	0.9799	0.9113	0.0515	17.79	0.1345	2.37	1/982	1/7748
SNV	Breast	DCHS1_D2519E_8	HLA-C07:02	SRSHAAVEY	0.8039	0.935	0.0573	171.52	0.2519	6.29	1/982	1/7748
SNV	Breast	GPATCH2_G350V_8	HLA-C07:02	ARLSRLHVM	0.9835	0.9547	0.0249	9.28	0.0448	16.41	1/982	1/7748
SNV	Breast	BCAT1_R364H_5	HLA-A02:01	KLASHILSKL	0.9896	0.546	0.2576	251.5	0.5441	1.32	1/982	1/7748
SNV	Breast	CCNB1_G298V_1	HLA-C07:01	VRPLPLHFL	0.9925	0.6663	0.102	274.24	0.1305	3.21	1/982	1/7748
SNV	Breast	CDC42BPG_R968H_7	HLA-C07:01	VRRGWQHVF	0.9823	0.5537	0.0296	52.56	0.0671	7.44	1/982	1/7748
SNV	Breast	CRTAP_T365I_6	HLA-C14:02	QFFNVITL	0.8654	0.9721	0.6775	168.86	0.6411	58.03	1/982	1/7748
SNV	Breast	CRTAP_T365I_7	HLA-C14:02	VQFFNVITL	0.5641	0.9416	0.3734	90.12	0.477	58.03	1/982	1/7748
SNV	Breast	IPO13_V713F_5	HLA-B18:01	FEKSFKTLL	0.869	0.9267	0.1114	231.47	0.2083	8.77	1/982	1/7748
SNV	Breast	IPO13_V713F_6	HLA-C14:02	IFEKSFKTL	0.7695	0.9417	0.1311	10.71	0.1509	8.77	1/982	1/7748
SNV	Breast	MYH10_A914P_3	HLA-C14:02	RLPAKKQEL	0.7114	0.9809	0.494	378.47	0.9543	9.86	1/982	1/7748
SNV	Breast	SDCCAG8_M112I_6	HLA-B18:01	HEETNIPTM	0.9791	0.9841	0.0838	15.93	0.0754	3.76	1/982	1/7748
SNV	Breast	SLC16A1_G417E_2	HLA-B18:01	YEDYKYTY	0.999	0.8891	0.4219	3.21	0.0208	4.5	1/982	1/7748
SNV	Breast	SLC16A1_G417E_2	HLA-B18:01	YEDYKYTYW	0.9903	0.9017	0.4948	187.1	0.1947	4.5	1/982	1/7748
SNV	Breast	SLC16A1_G417E_3	HLA-C07:01	MYEDYKYTY	0.8369	0.6847	0.6086	379.99	0.1553	4.5	1/982	1/7748
SNV	Breast	TRAK1_S200L_3	HLA-B18:01	NELSSSVQNY	0.9796	0.7151	0.0696	35.02	0.1047	5.79	1/982	1/7748
SNV	Breast	TRAK1_S200L_5	HLA-C07:01	KRNELSSSV	0.9829	0.7617	0.1086	425.39	0.1632	5.79	1/982	1/7748
SNV	Breast	DMXL1_D836N_3	HLA-B44:03	EENFILNNL	0.9802	0.9651	0.1785	11.93	0.1325	22	1/982	1/7748
SNV	Breast	DMXL1_D836N_6	HLA-C16:01	HVFEENFIL	0.9629	0.983	0.5866	40.7	0.2602	22	1/982	1/7748
SNV	Breast	PTPRA_R687Q_6	HLA-B44:03	RENKSQQIRQF	0.9992	0.8945	0.1534	141.98	0.3101	99.41	1/982	1/7748
SNV	Breast	RPS16_L47V_9	HLA-B44:03	LEMIEPRTVQY	0.998	0.9402	0.2205	200.98	0.3374	546.67	1/982	1/7748
SNV	Breast	RPS16_L47V_7	HLA-C16:01	MIEPRTVQY	0.5537	0.9816	0.3277	257.15	0.6485	546.67	1/982	1/7748
SNV	Breast	TAOK2_I315F_7	HLA-C07:01	YRKMKKFLF	0.9915	0.5489	0.073	36.14	0.0538	29.31	1/982	1/7748
SNV	Breast	ACAA2_R14L_6	HLA-C12:03	VVAAKLTPF	0.9726	0.9637	0.3176	51.69	0.3741	27.53	1/982	1/7748
SNV	Breast	AGK_Q52E_1	HLA-A02:01	ELIPPNAQV	0.9163	0.7715	0.7638	291.58	0.568	5.85	1/982	1/7748
SNV	Breast	AGO2_E722V_9	HLA-A02:01	RLFCTDKNVRV	0.9969	0.7835	1.128	25.54	0.2381	6.74	1/982	1/7748
SNV	Breast	CCDC66_E825K_6	HLA-C12:03	SSYERKNLI	0.7998	0.974	0.2319	26.34	0.2513	2.88	1/982	1/7748
SNV	Breast	CLDND1_T110S_4	HLA-C12:03	VSFSLTEQF	0.9549	0.988	0.055	50.65	0.3705	26.36	1/982	1/7748
SNV	Breast	CMYA5_F2635L_9	HLA-A02:01	VLVEKTKTL	0.9241	0.7618	0.5871	40.22	0.2806	6.95	1/982	1/7748
SNV	Breast	CMYA5_F2635L_9	HLA-C12:03	VLVEKTKTL	0.989	0.9833	0.4773	83.81	0.4781	6.95	1/982	1/7748
SNV	Breast	COL4A1_P1224L_9	HLA-B07:02	GPQGQPGLL	0.9912	0.608	0.1056	23.6	0.1641	93.75	1/982	1/7748
SNV	Breast	COLGALT2_W203L_9	HLA-C07:02	SRGLYSNFL	0.8473	0.9671	0.3508	342.05	0.3414	1.07	1/982	1/7748
SNV	Breast	DSP_R2118T_5	HLA-A02:01	NLIDTETGM	0.9157	0.5996	0.8485	384.69	0.6176	96.69	1/982	1/7748
SNV	Breast	EPOR_E49K_1	HLA-A02:01	KLLCFTERL	0.9938	0.7213	0.1073	90.14	0.3782	3.06	1/982	1/7748
SNV	Breast	FAM114A1_T238N_8	HLA-B18:01	LEFIGKKNM	0.9926	0.8303	0.1407	33.13	0.1025	22.69	1/982	1/7748
SNV	Breast	FAM114A1_T238N_5	HLA-C12:03	IGKKNMNVL	0.8554	0.992	1.4492	288.95	0.8654	22.69	1/982	1/7748
SNV	Breast	HDAC9_A993S_8	HLA-C12:03	HQSPNMNSV	0.9639	0.9542	1.1363	243.28	0.8066	1.57	1/982	1/7748
SNV	Breast	MUC16_I3493T_7	HLA-C12:03	SVTSPSTGL	0.7675	0.9857	1.4964	261.46	0.8312	1.05	1/982	1/7748
SNV	Breast	PEG3_S1344R_6	HLA-C12:03	KSFIHRTVL	0.9307	0.8514	0.1172	5.65	0.0677	6.12	1/982	1/7748
SNV	Breast	RALGPS2_P327L_3	HLA-C12:03	QTLPSPRNL	0.9018	0.9873	0.4612	69.28	0.4336	7.58	1/982	1/7748
SNV	Breast	RPP30_R91S_1	HLA-C12:03	SATSSRARL	0.9135	0.9824	0.4986	286.74	0.8628	9.01	1/982	1/7748
SNV	Breast	SIGLEC9_T192I_9	HLA-C12:03	SVSPLDPSI	0.8382	0.9583	0.8334	171.13	0.678	1.02	1/982	1/7748
SNV	Breast	SIGLEC9_T192I_1	HLA-C12:03	ITRSSVLTL	0.9867	0.9728	0.0922	8.74	0.1093	1.02	1/982	1/7748
SNV	Breast	TBC1D25_D336E_1	HLA-A02:01	ELASPILAV	0.9391	0.5511	0.5034	50.56	0.3038	11.54	1/982	1/7748
SNV	Breast	TP53_L130V_5	HLA-C12:03	YSPAVNKMF	0.7982	0.9772	0.327	325.17	0.9064	29.91	1/982	1/7748
SNV	Breast	TRBV6-1_P102A_4	HLA-C12:03	SAAASQTSV	0.8976	0.9632	0.2004	29.3	0.2722	3.27	1/982	1/7748
SNV	Breast	TRBV6-1_P102A_3	HLA-C12:03	AAASQTSVY	0.5387	0.9588	0.0415	27.16	0.2573	3.27	1/982	1/7748
SNV	Breast	TRBV6-1_P102A_2	HLA-C12:03	AASQTSVYF	0.8648	0.9657	0.1311	41.32	0.3351	3.27	1/982	1/7748
SNV	Breast	TRPM7_T583R_1	HLA-C12:03	RAQPYRPKI	0.541	0.964	0.523	115.85	0.5615	7.57	1/982	1/7748
SNV	Breast	ZFHX4_D883G_5	HLA-A02:01	LMGDGLSLL	0.9789	0.714	0.0876	25.04	0.2364	3.14	1/982	1/7748
SNV	Breast	ZMAT3_P15H_1	HLA-C12:03	HSPSPPMSV	0.9671	0.9764	0.1956	97.59	0.5156	14.88	1/982	1/7748
SNV	Breast	ZNF540_E129Q_4	HLA-B18:01	SEFQGQQGL	0.7182	0.9712	0.101	24.43	0.0898	1.39	1/982	1/7748
SNV	Breast	ZNF595_V41F_3	HLA-A02:01	NLFSLGFVI	0.9524	0.5671	0.2023	247.75	0.5416	3.94	1/982	1/7748
SNV	Breast	ZNF595_V41F_5	HLA-C07:02	YRNLFSLGF	0.9586	0.8747	0.021	4.03	0.0145	3.94	1/982	1/7748
SNV	Breast	ZNF652_V519A_9	HLA-B07:02	SPATPVPSA	0.9989	0.6124	0.0766	18.22	0.1502	10.97	1/982	1/7748
SNV	Breast	ZNF652_V519A_9	HLA-B07:02	SPATPVPSAV	0.998	0.6755	0.1056	13.04	0.1332	10.97	1/982	1/7748
SNV	Breast	GRB7_A137T_8	HLA-C12:03	MLVQRAHTL	0.984	0.9861	0.3644	41.38	0.3353	25.49	1/982	1/7748
SNV	Breast	MTOR_I1973F_6	HLA-B39:10	HPQALFYPL	0.9529	0.6175	0.0018	11.65	0.1035	16.57	1/982	1/7748
SNV	Breast	MTOR_I1973F_4	HLA-C12:03	QALFYPLTV	0.8741	0.9889	0.1451	55.89	0.3877	16.57	1/982	1/7748
SNV	Breast	TRIP4_P557T_7	HLA-B39:10	FPIKGNTKI	0.6962	0.6941	0.0053	2.13	0.0257	26.91	1/982	1/7748
SNV	Breast	TMEM87A_Q281R_5	HLA-B35:01	YAEFRNIRY	0.9617	0.8546	0.5059	7.8	0.1129	128.92	1/982	1/7748
SNV	Breast	KCTD9_L245S_4	HLA-C12:03	MANSSRCNL	0.9801	0.9884	0.3124	114.14	0.5575	16.44	1/982	1/7748
SNV	Breast	KIFC1_S658F_3	HLA-C12:03	FAFKVNQCV	0.961	0.9542	0.0376	147.08	0.63	34.46	1/982	1/7748
SNV	Breast	PCGF5_R170H_3	HLA-C12:03	STHVTVGTI	0.8538	0.9468	0.278	478.78	1.0571	20.95	1/982	1/7748
SNV	Breast	PRRC2B_R1601Q_8	HLA-C12:03	LSSRIPPQF	0.6942	0.9232	0.2999	375.87	0.961	96.8	1/982	1/7748
SNV	Breast	SCNN1D_G303R_4	HLA-C12:03	ITHRVGLVL	0.9796	0.9832	0.1311	25.94	0.2487	7.66	1/982	1/7748
SNV	Breast	DHODH_G18E_3	HLA-C04:01	ILEGGGLLF	0.9971	0.9809	0.2315	173	0.0914	3.5	1/982	1/7748
SNV	Breast	DHODH_G18E_4	HLA-C16:01	IILEGGGLL	0.8083	0.9841	1.1664	472.85	0.8258	3.5	1/982	1/7748
SNV	Breast	FRYL_L330F_2	HLA-C04:01	FFNNWHIFL	0.516	0.698	0.1935	26.9	0.0416	14.53	1/982	1/7748
SNV	Breast	HMCN1_V1637L_9	HLA-C16:01	KSFHVDVYL	0.9607	0.9418	0.1509	48.69	0.2852	1.69	1/982	1/7748
SNV	Breast	HSBP1L1_Q30E_3	HLA-C04:01	HFEALTATL	0.9985	0.9793	0.0155	24.73	0.0397	67.45	1/982	1/7748
SNV	Breast	IFNGR2_T170M_9	HLA-C04:01	PFDIADTSM	0.9915	0.761	0.0651	61.73	0.06	64.68	1/982	1/7748
SNV	Breast	IFNGR2_T170M_6	HLA-C16:01	IADTSMAFF	0.79	0.9645	0.1765	271.31	0.6641	64.68	1/982	1/7748
SNV	Breast	LMBR1L_N61D_3	HLA-C04:01	TVDKIALEL	1	0.911	0.0315	344.4	0.1275	20.79	1/982	1/7748
SNV	Breast	LMBR1L_N61D_3	HLA-C16:01	TVDKIALEL	0.9679	0.9784	0.21	56.59	0.3091	20.79	1/982	1/7748
SNV	Breast	NSL1_D75H_7	HLA-B44:03	REPALRHAQW	0.9533	0.8528	0.0604	17.16	0.1504	20.92	1/982	1/7748
SNV	Breast	PIP4K2C_Q64H_1	HLA-C04:01	HVPPPVMLL	0.9654	0.8784	0.1961	249.29	0.1114	205.13	1/982	1/7748
SNV	Breast	PIP4K2C_Q64H_3	HLA-C16:01	LSHVPPPVM	0.8964	0.9801	0.0255	23.8	0.1866	205.13	1/982	1/7748
SNV	Breast	PIP4K2C_Q64H_1	HLA-C16:01	HVPPPVMLL	0.9517	0.9807	0.1285	7.07	0.0707	205.13	1/982	1/7748
SNV	Breast	SHROOM4_H1222Q_8	HLA-C16:01	FLPPIRGQL	0.9331	0.9877	0.6071	307.17	0.7003	2.3	1/982	1/7748
SNV	Breast	SPX_T11A_7	HLA-C16:01	RSLAATAL	0.9735	0.9799	0.6563	234.37	0.6214	1.04	1/982	1/7748
SNV	Breast	SPX_T11A_6	HLA-C16:01	SLAATALAL	0.8725	0.9757	1.0535	105.03	0.4354	1.04	1/982	1/7748
SNV	Breast	SPX_T11A_5	HLA-C16:01	LAATALALF	0.7997	0.9899	0.0784	175.35	0.5479	1.04	1/982	1/7748
SNV	Breast	SPX_T11A_4	HLA-C16:01	AATALALFL	0.9225	0.9844	0.2306	330.42	0.721	1.04	1/982	1/7748
SNV	Breast	THEM5_F132L_8	HLA-C16:01	QGFEYVILF	0.6741	0.9748	1.2036	242.23	0.6311	4.84	1/982	1/7748
SNV	Breast	ZBED5_V90L_8	HLA-B44:03	SEGELSRLKF	0.9995	0.9121	0.0724	3.01	0.0602	21.63	1/982	1/7748
SNV	Breast	AGO1_R284H_1	HLA-C07:02	HRPASHQTF	0.8397	0.8122	0.0414	17.26	0.0714	21.53	1/982	1/7748
SNV	Breast	DAB2IP_G257D_4	HLA-C07:02	VFWDEHFEF	0.9039	0.9841	0.0899	28.44	0.095	28.94	1/982	1/7748
SNV	Breast	DAB2IP_G257D_3	HLA-C04:01	FWDEHFEF	0.9999	0.702	0.01	8.87	0.0202	28.94	1/982	1/7748
SNV	Breast	DAB2IP_G257D_4	HLA-C04:01	VFWDEHFEF	0.8173	0.748	0.4653	91.71	0.072	28.94	1/982	1/7748
SNV	Breast	HYOU1_V134L_1	HLA-B39:01	LHFQISSQL	0.9993	0.9542	0.0044	6.44	0.0366	69.09	1/982	1/7748
SNV	Breast	HYOU1_V134L_7	HLA-B35:01	DPQRQTLHF	0.9754	0.719	0.2211	478.13	0.4834	69.09	1/982	1/7748
SNV	Breast	HYOU1_V134L_9	HLA-C07:02	TFDPQRQTL	0.9918	0.9751	0.0638	25.05	0.0881	69.09	1/982	1/7748
SNV	Breast	HYOU1_V134L_9	HLA-C04:01	TFDPQRQTL	0.9996	0.8955	0	1.65	0.0036	69.09	1/982	1/7748
SNV	Breast	HYOU1_V134L_10	HLA-C04:01	LTFDPQRQTL	0.9985	0.855	0.4253	53.89	0.0573	69.09	1/982	1/7748
SNV	Breast	HYOU1_V134L_9	HLA-C04:01	TFDPQRQTLHF	1	0.7736	0.1839	99.63	0.0739	69.09	1/982	1/7748
SNV	Breast	PRCC_R116L_5	HLA-B35:01	LPSPLGPGL	0.9791	0.8956	0.0993	7.9	0.1136	102.89	1/982	1/7748
SNV	Breast	PRCC_R116L_3	HLA-B35:01	SPLGPGLNL	0.9577	0.9115	0.318	67.73	0.2713	102.89	1/982	1/7748
SNV	Breast	SYNM_S1459L_2	HLA-A02:01	TLFTFQMDV	0.9852	0.5315	0.0484	8.58	0.1463	6.71	1/982	1/7748
SNV	Breast	SYNM_S1459L_8	HLA-B35:01	APGPKETLF	0.9462	0.972	0.298	280.39	0.4161	6.71	1/982	1/7748
SNV	Breast	SYNM_S1459L_6	HLA-B35:01	GPKETLFTF	0.9312	0.8644	0.1884	10.71	0.134	6.71	1/982	1/7748
SNV	Breast	TBC1D10C_R141H_2	HLA-B39:01	HHQFPLHEM	0.9995	0.9817	0.012	3.62	0.0224	3.83	1/982	1/7748
SNV	Breast	TBC1D10C_R141H_1	HLA-B39:01	HQFPLHEMF	0.9492	0.9917	0.2933	367.74	0.2794	3.83	1/982	1/7748
SNV	Breast	TBC1D10C_R141H_1	HLA-C07:02	HQFPLHEMF	0.9871	0.9881	0.0301	318.76	0.331	3.83	1/982	1/7748
SNV	Breast	CA2_G182R_8	HLA-C02:02	FTNFDPRRL	0.5047	0.9613	0.4305	59.31	0.1188	25.42	1/982	1/7748
SNV	Breast	IGDCC4_E985V_7	HLA-C07:01	RRSPHRVSL	0.9995	0.7671	0.0057	5.61	0.0103	2.83	1/982	1/7748
SNV	Breast	LYG1_M62V_7	HLA-A02:01	RLAEIDVPYL	0.999	0.5829	0.4216	1.72	0.0361	3.29	1/982	1/7748
SNV	Breast	LYG1_M62V_7	HLA-A02:01	RLAEIDVPYLL	0.9996	0.5225	1.0813	18.08	0.2088	3.29	1/982	1/7748
SNV	Breast	OGDHL_R195W_7	HLA-A02:01	SLREIIWRL	0.9301	0.6871	0.1975	4.35	0.0935	1.12	1/982	1/7748
SNV	Breast	ACLY_I202F_4	HLA-A02:01	YLEFNPLVV	0.9897	0.5856	0.3713	19.52	0.2153	250.89	1/982	1/7748
SNV	Breast	ACLY_I202F_6	HLA-C03:04	FTYLEFNPL	0.9991	0.9903	0.0734	68.83	0.2355	250.89	1/982	1/7748
SNV	Breast	ACLY_I202F_4	HLA-C08:02	YLEFNPLVV	0.9964	0.9925	0.2279	62.15	0.0535	250.89	1/982	1/7748
SNV	Breast	DLC1_D185G_1	HLA-C03:04	GSISKSLEL	0.9998	0.9869	0.2131	347.13	0.4436	14.07	1/982	1/7748
SNV	Breast	ERLIN2_D102H_9	HLA-A02:01	FLVPNAVYHI	0.9966	0.5885	0.132	27.14	0.2433	87.6	1/982	1/7748
SNV	Breast	ERLIN2_D102H_9	HLA-A02:01	FLVPNAVYHIV	0.9967	0.6009	1.5467	163.24	0.4726	87.6	1/982	1/7748
SNV	Breast	ERLIN2_D102H_4	HLA-B15:01	AVYHIVKNY	0.9956	0.8258	0.2361	14.85	0.1204	87.6	1/982	1/7748
SNV	Breast	IDH3A_G106S_3	HLA-C03:04	AASHPSMNL	0.9996	0.9848	0.0645	25.3	0.1556	17.67	1/982	1/7748
SNV	Breast	IDH3A_G106S_2	HLA-C03:04	ASHPSMNLL	0.9987	0.9853	0.0668	115.56	0.2895	17.67	1/982	1/7748
SNV	Breast	LRP1_V4052M_2	HLA-A02:01	AMDYHNERL	0.9399	0.6147	0.924	136.08	0.4414	79.74	1/982	1/7748
SNV	Breast	LRP1_V4052M_9	HLA-B15:01	IQWPTGLAM	0.9994	0.963	0.0208	7.06	0.067	79.74	1/982	1/7748
SNV	Breast	LRP1_V4052M_9	HLA-C03:04	IQWPTGLAM	0.9896	0.9952	0.2614	46.2	0.1954	79.74	1/982	1/7748
SNV	Breast	LRP1_V4052M_2	HLA-C08:02	AMDYHNERL	0.9998	0.9721	0.0815	331.02	0.1174	79.74	1/982	1/7748
SNV	Breast	PANX1_V290L_5	HLA-A02:01	LLAPLVVYT	0.9846	0.6051	0.3051	18.46	0.2106	46.53	1/982	1/7748
SNV	Breast	PANX1_V290L_5	HLA-A02:01	LLAPLVVYTL	0.9895	0.578	0.2899	113.2	0.4099	46.53	1/982	1/7748
SNV	Breast	PANX1_V290L_6	HLA-B15:01	VLLAPLVVY	0.9978	0.9232	0.1565	22.44	0.1496	46.53	1/982	1/7748
SNV	Breast	PANX1_V290L_7	HLA-C03:04	YVLLAPLVV	0.6432	0.9973	0.8274	135.84	0.3083	46.53	1/982	1/7748
SNV	Breast	PANX1_V290L_4	HLA-C03:04	LAPLVVYTL	0.999	0.9895	0.2574	395.22	0.4646	46.53	1/982	1/7748
SNV	Breast	REV3L_C2058F_7	HLA-C08:02	KMDVSPFIL	0.9998	0.94	0.094	90.57	0.0631	15.55	1/982	1/7748
SNV	Breast	SMARCD3_S390N_4	HLA-A02:01	ALDNKIHET	0.9472	0.6353	1.0429	153.03	0.4615	4.3	1/982	1/7748
SNV	Breast	TRPV2_L441R_5	HLA-B15:01	ILILRGGIY	0.9936	0.5893	0.3693	47.19	0.2116	13.29	1/982	1/7748
SNV	Breast	ATG4C_L139F_7	HLA-A02:01	WTWPDAFNI	0.7644	0.5138	0.7085	432.27	0.6433	20.28	1/982	1/7748
SNV	Breast	ATG4C_L139F_9	HLA-A32:01	RAWTWPDAF	0.9606	0.9529	0.0314	18.19	0.0564	20.28	1/982	1/7748
SNV	Breast	NEDD4_P871S_1	HLA-B39:24	SRLKIPAHL	0.9986	0.5701	0.0336	7.8	0.0697	18.14	1/982	1/7748
SNV	Breast	P2RY8_M114I_9	HLA-A32:01	NMYSSILTI	0.9385	0.8088	0.0304	82.38	0.1323	9.71	1/982	1/7748
SNV	Breast	TP53_P27S_4	HLA-A02:01	KLLSENNVL	0.973	0.8035	0.7751	59.96	0.3257	66.29	1/982	1/7748
SNV	Breast	TPR_R2100I_9	HLA-B44:02	QELGPPVQI	0.9867	0.6818	0.139	11.34	0.1179	72.07	1/982	1/7748
SNV	Breast	TPR_R2100I_9	HLA-B44:02	QELGPPVQII	0.98	0.5561	0.3049	209.56	0.3261	72.07	1/982	1/7748
SNV	Breast	ZNF711_D58N_4	HLA-C05:01	VTDNGITL	1	0.8825	0.0147	20.06	0.1234	11.16	1/982	1/7748
SNV	Breast	ZNF711_D58N_5	HLA-C05:01	VVTDNGITL	0.9994	0.9203	0.2104	66.07	0.1891	11.16	1/982	1/7748
SNV	Breast	ZNF711_D58N_5	HLA-C02:02	VVTDNGITL	0.5906	0.9501	0.2134	56.39	0.1146	11.16	1/982	1/7748
SNV	Breast	FTL_D128N_8	HLA-A32:01	RTDPHLCNF	0.9637	0.9484	0.2853	367.4	0.2539	18290.37	1/982	1/7748
SNV	Breast	RNF213_Q670K_7	HLA-A32:01	HILGIPKSW	0.9785	0.9967	0.4244	18.03	0.0561	18.73	1/982	1/7748
SNV	Breast	RNF213_Q670K_8	HLA-B38:01	SHILGIPKSW	0.8367	0.9915	0.7718	376.64	0.1553	18.73	1/982	1/7748
SNV	Breast	UTP20_E1415K_4	HLA-C12:03	TVFKTLSDF	0.7488	0.966	0.6513	156.46	0.6496	12.28	1/982	1/7748
SNV	Breast	DHCR24_R330H_3	HLA-C07:02	YHHHTRSIF	0.727	0.7765	0.1184	229.1	0.2859	207.29	1/982	1/7748
SNV	Breast	DNMT1_D978H_2	HLA-C07:02	SHYIKGSNL	0.6241	0.9291	0.648	124.54	0.2172	18.96	1/982	1/7748
SNV	Breast	LINGO1_V283I_1	HLA-C07:02	IRHLVYLRF	0.8621	0.6742	0.1481	40.25	0.1165	3.44	1/982	1/7748
SNV	Breast	PDE4A_I410M_3	HLA-C07:02	FRMPVDTM	0.9902	0.9333	0.9331	84.74	0.1781	5.67	1/982	1/7748
SNV	Breast	PDE4A_I410M_3	HLA-C07:02	FRMPVDTMV	0.7282	0.96	0.2181	23.85	0.0853	5.67	1/982	1/7748
SNV	Breast	PDE4A_I410M_3	HLA-C07:02	FRMPVDTMVTY	0.9981	0.9689	0.2626	459.45	0.3849	5.67	1/982	1/7748
SNV	Breast	PDE4A_I410M_3	HLA-C07:01	FRMPVDTM	0.9995	0.6435	0.8103	182.11	0.1124	5.67	1/982	1/7748
SNV	Breast	PDE4A_I410M_3	HLA-C07:01	FRMPVDTMV	0.935	0.7452	0.1399	16.78	0.0335	5.67	1/982	1/7748
SNV	Breast	SMAD9_R161H_7	HLA-B08:01	SLLAKFHSA	0.9933	0.5764	0.1523	188	0.2276	1.93	1/982	1/7748
SNV	Breast	SMAD9_R161H_5	HLA-B08:01	LAKFHSASL	0.9986	0.7525	0.0077	9.28	0.0371	1.93	1/982	1/7748
SNV	Breast	TM7SF3_I342M_1	HLA-C07:01	MKYDVNLIL	0.9907	0.7208	0.4203	193.3	0.1146	18.16	1/982	1/7748
SNV	Breast	KIAA1551_L64P_4	HLA-B35:01	QPLPNIQNY	0.9853	0.9721	0.034	1.46	0.0218	21.37	1/982	1/7748
SNV	Breast	KIAA1551_L64P_5	HLA-B35:01	SQPLPNIQNY	0.8419	0.8865	1.7713	21.5	0.1809	21.37	1/982	1/7748
SNV	Breast	KIAA1551_L64P_6	HLA-B35:01	ISQPLPNIQNY	0.9728	0.8546	1.4679	220.88	0.3886	21.37	1/982	1/7748
SNV	Breast	KLHL7_A524S_1	HLA-A02:01	SAVGSIVYV	0.9612	0.6087	0.3914	282.75	0.563	10.99	1/982	1/7748
SNV	Breast	KLHL7_A524S_1	HLA-B35:01	SAVGSIVY	0.9933	0.8584	0.9674	263.19	0.4081	10.99	1/982	1/7748
SNV	Breast	KLHL7_A524V_2	HLA-B35:01	CVAVGSIVY	0.9696	0.892	0.149	461.01	0.4788	10.99	1/982	1/7748
SNV	Breast	COQ5_G35W_2	HLA-C04:01	PWDLLSARL	0.9939	0.9322	0.2771	179.4	0.094	45.42	1/982	1/7748
SNV	Breast	KLHL31_I221R_3	HLA-A02:01	LLRDDDLQL	0.9335	0.7551	0.6794	115.05	0.4127	1.15	1/982	1/7748
SNV	Breast	SLC41A3_V99A_2	HLA-B51:01	EAKDLLTLV	0.9873	0.6906	0.0998	50.38	0.1781	20.38	1/982	1/7748
SNV	Breast	SLC41A3_V99A_3	HLA-B44:03	VEAKDLLTL	0.9597	0.9551	0.1353	265.71	0.3593	20.38	1/982	1/7748
SNV	Breast	TBX3_W113R_7	HLA-B44:03	LEAKELRDQF	0.9975	0.935	0.2265	389.62	0.3893	115.06	1/982	1/7748
SNV	Breast	ARID1A_S1992P_2	HLA-B35:01	LPFVPGNDF	0.9953	0.96	0.062	2	0.0371	22.67	1/982	1/7748
SNV	Breast	CENPK_M166L_9	HLA-C04:01	IFNELKTKL	0.884	0.7456	0.1103	90.48	0.0717	1.31	1/982	1/7748
SNV	Breast	FRK_R64P_2	HLA-B35:01	FPAGDKLQV	0.9684	0.9024	0.1722	36.69	0.2197	1.94	1/982	1/7748
SNV	Breast	FRK_R64P_2	HLA-B35:01	FPAGDKLQVL	0.9914	0.9163	0.286	101.3	0.3087	1.94	1/982	1/7748
SNV	Breast	GREB1L_T613I_6	HLA-C02:02	ASHFKITSL	0.9508	0.9739	0.066	419.28	0.4207	1.47	1/982	1/7748
SNV	Breast	HS6ST2_V144I_9	HLA-A32:01	KIFGPMASI	0.9975	0.9748	0.0314	2.81	0.0117	1.94	1/982	1/7748
SNV	Breast	HS6ST2_V144I_6	HLA-B35:01	GPMASIGNM	0.9763	0.6278	0.7725	375.47	0.4529	1.94	1/982	1/7748
SNV	Breast	HS6ST2_V144I_9	HLA-C02:02	KIFGPMASI	0.6795	0.9817	0.3539	111.49	0.1726	1.94	1/982	1/7748
SNV	Breast	MORN1_P222A_4	HLA-A02:01	ILGAEVMEV	0.9983	0.7449	0.2042	1.48	0.0197	1.02	1/982	1/7748
SNV	Breast	MORN1_P222A_5	HLA-A02:01	VILGAEVMEV	0.9974	0.6516	0.5649	175.7	0.4851	1.02	1/982	1/7748
SNV	Breast	SLC16A14_T356M_4	HLA-B35:01	FPLMSIIAI	0.98	0.7647	0.084	74.95	0.2805	4.34	1/982	1/7748
SNV	Breast	ABCA8_S203L_8	HLA-C17:01	SVMEELMLV	0.9223	0.9283	0.519	12.23	0.0444	2.67	1/982	1/7748
SNV	Breast	C2CD3_T119N_7	HLA-A02:01	LVLEVINKL	0.9861	0.5225	0.5218	210.34	0.5151	7.46	1/982	1/7748
SNV	Breast	C2CD3_T119N_8	HLA-A02:01	VLVLEVINKL	0.9425	0.5517	1.3789	114.72	0.4122	7.46	1/982	1/7748
SNV	Breast	C2CD3_T119N_7	HLA-C17:01	LVLEVINKL	0.6054	0.6795	0.1659	134.86	0.2466	7.46	1/982	1/7748
SNV	Breast	FANCB_D434V_10	HLA-A02:01	ALINLVQGKV	0.9894	0.5112	0.6371	201.19	0.5079	1.55	1/982	1/7748
SNV	Breast	GLE1_R316Q_3	HLA-A02:01	ALQEMRDLL	0.979	0.5963	0.7316	368.98	0.6084	47.17	1/982	1/7748
SNV	Breast	IL4R_E181Q_3	HLA-A02:01	YLQPSLRIAA	0.9448	0.8379	1.0862	269.22	0.5551	20.35	1/982	1/7748
SNV	Breast	MPP5_R606G_3	HLA-A03:01	RLGALLAK	0.9983	0.5235	1.3261	339.01	0.4404	12.09	1/982	1/7748
SNV	Breast	PLXNA3_D1022G_6	HLA-A02:01	YTYTQGPTV	0.9163	0.5587	0.2489	32.72	0.2605	9.8	1/982	1/7748
SNV	Breast	PLXNA3_D1022G_6	HLA-C17:01	YTYTQGPTV	0.7838	0.9803	0.0511	11.3	0.0412	9.8	1/982	1/7748
SNV	Breast	PLXNA3_D1022G_4	HLA-C17:01	YTQGPTVTRL	0.8405	0.9139	0.2966	445.03	0.4534	9.8	1/982	1/7748
SNV	Breast	RNF31_Q411E_8	HLA-A02:01	LLASAQSEV	0.9952	0.578	0.1794	43.31	0.2878	7.24	1/982	1/7748
SNV	Breast	RPS6KB2_E177K_4	HLA-C17:01	YLAKITLAL	0.8214	0.8944	0.0259	5.5	0.0207	8.13	1/982	1/7748
SNV	Breast	TRAK2_T733A_1	HLA-C17:01	ATFSSTMSL	0.5822	0.96	0.0147	23.81	0.075	29.81	1/982	1/7748
SNV	Breast	XAB2_M741T_2	HLA-C17:01	FTASQMLKV	0.7394	0.951	0.3409	31.45	0.0918	21.09	1/982	1/7748
SNV	Breast	BOC_Q167L_6	HLA-A24:02	RYSVKLEWL	0.9897	0.5053	0.0895	68.86	0.4005	4.6	1/982	1/7748
SNV	Breast	BOC_Q167L_7	HLA-C07:01	VRYSVKLEW	0.954	0.8063	0.3229	152.35	0.1057	4.6	1/982	1/7748
SNV	Breast	CCM2_R307H_6	HLA-C12:03	YMLTLHTKL	0.8761	0.9899	0.7544	230.47	0.7868	22.34	1/982	1/7748
SNV	Breast	FAM196A_T353M_7	HLA-C07:01	QRIVPHMEV	0.991	0.7622	0.1663	139.4	0.1024	1.72	1/982	1/7748
SNV	Breast	FAM196A_T353M_6	HLA-C12:03	RIVPHMEVV	0.97	0.9861	0.4773	59.18	0.3976	1.72	1/982	1/7748
SNV	Breast	MAML1_N717I_7	HLA-A24:02	VFPQAGILM	0.9774	0.5664	0.2666	8.66	0.2044	22.67	1/982	1/7748
SNV	Breast	MAML1_N717I_8	HLA-C12:03	RVFPQAGIL	0.9682	0.9888	0.283	4.34	0.0483	22.67	1/982	1/7748
SNV	Breast	MAML1_N717I_8	HLA-C12:03	RVFPQAGILM	0.998	0.9906	0.7194	78.59	0.4631	22.67	1/982	1/7748
SNV	Breast	PRX_E78Q_4	HLA-B38:01	FKYQDALRL	0.9846	0.9422	0.763	349.45	0.1495	1.06	1/982	1/7748
SNV	Breast	SRCAP_L2021V_5	HLA-C12:03	RARPVHRIV	0.5901	0.9816	0.6513	74.68	0.4512	38.92	1/982	1/7748
SNV	Breast	HSP90AB1_R456L_5	HLA-B41:01	SELLLYHTS	0.5061	0.8825	0.4193	338.93	0.3695	1202.12	1/982	1/7748
SNV	Breast	TBX5_V493M_5	HLA-C06:02	YSHGMPRTL	0.9937	0.9839	0.0324	248.72	0.1442	5.76	1/982	1/7748
SNV	Breast	TBX5_V493M_5	HLA-C15:02	YSHGMPRTL	0.9992	0.7851	0.015	5.07	0.0428	5.76	1/982	1/7748
SNV	Breast	TSC22D1_M988V_2	HLA-C15:02	AVDLVKSHL	0.997	0.9085	0.1871	58.01	0.2957	107.15	1/982	1/7748
SNV	Breast	CMIP_G659C_7	HLA-B27:05	ARLLSSCSF	0.9996	0.8645	0.2732	14.05	0.2213	23.56	1/982	1/7748
SNV	Breast	TLR5_D313E_9	HLA-B27:05	SRVFETLKEL	0.9999	0.9451	0.199	41.15	0.3126	7.35	1/982	1/7748
SNV	Breast	TLR5_D313E_8	HLA-C07:02	RVFETLKEL	0.9885	0.9817	1.0599	475.44	0.39	7.35	1/982	1/7748
SNV	Breast	TBL1X_V487L_7	HLA-C05:01	ASFDSTLRL	0.9808	0.877	0.3942	60.04	0.1824	24.41	1/982	1/7748
SNV	Breast	BSDC1_S184L_8	HLA-B07:02	VPAAVSHL	0.9991	0.5052	0.5946	226.95	0.3324	59.01	1/982	1/7748
SNV	Breast	BSDC1_S184L_8	HLA-B07:02	VPAAVSHLEF	0.9974	0.5226	0.2851	96.99	0.2614	59.01	1/982	1/7748
SNV	Breast	BSDC1_S184L_3	HLA-C07:02	SHLEFWHRY	0.7818	0.9497	0.6807	127.8	0.22	59.01	1/982	1/7748
SNV	Breast	CACNA1D_F107L_7	HLA-B07:02	RPARALLCL	0.9996	0.6733	0.0105	4.66	0.0715	6.76	1/982	1/7748
SNV	Breast	CACNA1H_D913G_4	HLA-C07:02	KTMGNVATF	0.9919	0.8716	1.1496	195	0.2669	35.62	1/982	1/7748
SNV	Breast	CDIP1_P46R_1	HLA-C05:01	RADIGPPPY	0.9858	0.9357	0.5075	406.06	0.3771	17.42	1/982	1/7748
SNV	Breast	CRTC3_R87W_9	HLA-A24:02	SFHQADNVW	0.9515	0.6754	0.5949	54.3	0.3749	22.98	1/982	1/7748
SNV	Breast	DEGS2_E11Q_6	HLA-C07:02	SRSDFQWVY	0.8651	0.9321	0.028	14.29	0.0633	71.79	1/982	1/7748
SNV	Breast	FASN_Q2238H_1	HLA-C05:01	HSSERPLFL	0.9998	0.921	0.1233	279.53	0.3299	146.39	1/982	1/7748
SNV	Breast	LRRC27_E191D_6	HLA-B07:02	APPVRDMTL	0.9995	0.5419	0.1081	8.83	0.1025	2.66	1/982	1/7748
SNV	Breast	LRRC27_E191D_8	HLA-B44:02	QEAPPVRDM	0.9939	0.5529	0.1465	5.46	0.0847	2.66	1/982	1/7748
SNV	Breast	LRRC27_E191D_9	HLA-B44:02	SQEAPPVRDM	0.8828	0.5338	1.8844	130.45	0.286	2.66	1/982	1/7748
SNV	Breast	LY6K_S130L_9	HLA-C05:01	NLEGPPINL	0.9999	0.9208	0.1154	131.63	0.2433	2.42	1/982	1/7748
SNV	Breast	MSH5_P814S_7	HLA-C05:01	KLDLEDSNL	0.9998	0.9088	0.0968	19.37	0.1218	1.31	1/982	1/7748
SNV	Breast	NHSL1_P242A_3	HLA-C07:02	YTADHYSTL	0.8989	0.9326	0.6717	16.05	0.0685	4.02	1/982	1/7748
SNV	Breast	NHSL1_P242A_3	HLA-C05:01	YTADHYSTL	0.9993	0.9166	0.1109	3.53	0.0443	4.02	1/982	1/7748
SNV	Breast	PCDHA3_I48M_3	HLA-C07:02	GRMAQDLGL	0.8039	0.945	0.4496	246.01	0.2942	4.13	1/982	1/7748
SNV	Breast	PCDHA3_I48M_1	HLA-C05:01	MAQDLGLEL	0.9996	0.9632	0.0568	14.93	0.1096	4.13	1/982	1/7748
SNV	Breast	PIK3CA_C901F_9	HLA-C05:01	AIDLFTRSF	0.9995	0.9464	0.1154	40.64	0.1578	11.79	1/982	1/7748
SNV	Breast	PLEKHF2_I90M_1	HLA-B44:02	MKDEGDLRNGW	0.9968	0.5699	1.1669	24.48	0.1639	116.33	1/982	1/7748
SNV	Breast	PRCC_Q56E_8	HLA-C07:02	ALLPPPPEM	0.5582	0.9899	0.4496	245.88	0.2942	88.3	1/982	1/7748
SNV	Breast	PRCC_Q56E_8	HLA-C05:01	ALLPPPPEM	0.8941	0.9946	0.377	16.23	0.1135	88.3	1/982	1/7748
SNV	Breast	PRCC_Q56E_7	HLA-C05:01	LLPPPPEML	0.9609	0.9959	0.0943	29.67	0.1414	88.3	1/982	1/7748
SNV	Breast	PRKG1_K147M_6	HLA-C05:01	VMEDGMVEV	0.9998	0.9647	0.1043	2.9	0.0386	15.81	1/982	1/7748
SNV	Breast	PRKG1_K147M_7	HLA-C05:01	YVMEDGMVEV	0.9995	0.9734	1.2036	51.08	0.1716	15.81	1/982	1/7748
SNV	Breast	SENP8_E57K_5	HLA-C07:02	FISPKVTQF	0.967	0.8399	0.1256	53.1	0.1382	3.7	1/982	1/7748
SNV	Breast	SENP8_E57K_6	HLA-C07:02	SFISPKVTQF	0.9914	0.816	0.2181	486.49	0.3934	3.7	1/982	1/7748
SNV	Breast	SENP8_E57K_5	HLA-C05:01	FISPKVTQF	0.977	0.7661	0.1324	118.69	0.2349	3.7	1/982	1/7748
SNV	Breast	SPAG5_D436H_7	HLA-C07:02	SRHDLEHNL	0.9267	0.9397	0.021	21.07	0.0788	7.81	1/982	1/7748
SNV	Breast	SYT12_E105Q_7	HLA-C05:01	SIEDTFQSI	0.9999	0.8833	0.0803	186.28	0.2805	8.68	1/982	1/7748
SNV	Breast	TRMU_R334H_4	HLA-C07:02	FRFHHQMAL	0.9731	0.9696	0	1.99	0.0058	4.82	1/982	1/7748
SNV	Breast	ZFP82_L30F_9	HLA-C05:01	YLDLEQKDF	0.9989	0.875	0.1355	72.46	0.1955	8.69	1/982	1/7748
SNV	Breast	ALOX15B_R634W_3	HLA-B35:08	APWRSIATF	0.9866	0.7847	0.0359	20.77	0.0946	3.3	1/982	1/7748
SNV	Breast	INTS6_N551K_1	HLA-A31:01	KLLDHLTRMR	0.9936	0.5324	0.3202	83.28	0.1898	6.14	1/982	1/7748
SNV	Breast	INTS6_N551K_1	HLA-A02:01	KLLDHLTRM	0.9931	0.6658	0.1273	1.94	0.0434	6.14	1/982	1/7748
SNV	Breast	INTS6_N551K_8	HLA-C04:01	AYDIPRRKL	0.9119	0.6426	0.0146	13.7	0.03	6.14	1/982	1/7748
SNV	Breast	INTS6_N551K_1	HLA-C15:02	KLLDHLTRM	0.9157	0.7038	0.9576	35.28	0.2171	6.14	1/982	1/7748
SNV	Breast	PCDHB15_P429T_7	HLA-C04:01	ITDLGTTRL	1	0.6474	0.0901	364.6	0.1316	4.03	1/982	1/7748
SNV	Breast	PCDHB15_P429T_7	HLA-C15:02	ITDLGTTRL	0.995	0.8815	0.0896	5.05	0.0426	4.03	1/982	1/7748
SNV	Breast	PIK3CA_E542K_8	HLA-C15:02	STRDPLSKI	0.996	0.6932	0.1871	19.94	0.1456	21.87	3/982	4/7748
SNV	Breast	DOCK10_A1534E_1	HLA-B08:01	ELKHVFASL	0.9971	0.7289	0.0314	19.16	0.0622	5.98	1/982	1/7748
SNV	Breast	DOCK10_A1534E_4	HLA-B35:01	SATELKHVF	0.9965	0.8952	0.0569	13.97	0.1544	5.98	1/982	1/7748
SNV	Breast	EPPK1_R745P_2	HLA-B08:01	YPRGYFDQM	0.8855	0.5106	0.2155	112.66	0.1784	4.49	1/982	1/7748
SNV	Breast	EPPK1_R745P_8	HLA-B35:01	VPVDVAYPRGY	0.9978	0.6766	0.4585	94.05	0.3011	4.49	1/982	1/7748
SNV	Breast	PRKACA_W197R_1	HLA-A11:01	RTLCGTPEY	0.9481	0.5212	0.601	206.33	0.4131	66.7	1/982	1/7748
SNV	Breast	AP3M1_P325A_2	HLA-C03:04	TATQGSYTF	0.986	0.9885	0.4206	184.2	0.3501	52.96	1/982	1/7748
SNV	Breast	ARSK_E331K_4	HLA-A02:01	SMYKASAHV	0.9854	0.6126	0.0314	19.38	0.2147	7.38	1/982	1/7748
SNV	Breast	ARSK_E331K_1	HLA-C03:04	KASAHVPLL	0.9988	0.9955	0.0191	10.5	0.0857	7.38	1/982	1/7748
SNV	Breast	DCAF6_P707L_3	HLA-B27:05	RRLLVKMVY	0.9997	0.8764	0.0902	1.4	0.0284	131.52	1/982	1/7748
SNV	Breast	DCAF6_P707L_3	HLA-B27:05	RRLLVKMVYK	0.9998	0.8676	0.1914	120.27	0.428	131.52	1/982	1/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:05	ARHGGWTTK	0.9983	0.8261	0.1474	11.97	0.2093	18.85	11/982	17/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:05	ARHGGWTTKM	0.9998	0.666	0.0388	24.5	0.2651	18.85	11/982	17/7748
SNV	Breast	ABCF3_E181D_3	HLA-A32:01	RIDNFDVSF	0.9419	0.9475	0.7401	14.28	0.0487	17.99	1/982	1/7748
SNV	Breast	ABCF3_E181D_8	HLA-A32:01	KSYDVRIDNF	0.9955	0.7644	0.6847	129.04	0.1642	17.99	1/982	1/7748
SNV	Breast	ABCF3_E181D_7	HLA-C04:01	SYDVRIDNF	0.9926	0.6302	0.0177	5.1	0.0126	17.99	1/982	1/7748
SNV	Breast	AKAP13_L2661F_9	HLA-A32:01	RLRAAQKQF	0.9761	0.8364	0.4686	79.47	0.1302	10.59	1/982	1/7748
SNV	Breast	AKAP8_K534Q_4	HLA-B35:01	HIVQMLEKY	0.9617	0.6398	0.3714	386.96	0.4567	20.4	1/982	1/7748
SNV	Breast	ATF7_E21Q_4	HLA-C03:04	FTNQDHLAV	0.9828	0.9911	0.1696	29.73	0.1653	6.88	1/982	1/7748
SNV	Breast	CLCA4_V740L_9	HLA-C03:04	RTASGGAFL	0.9519	0.9864	0.3766	95.33	0.2695	1.56	1/982	1/7748
SNV	Breast	CLCA4_V740L_2	HLA-C03:04	FLVSQVPSL	0.9951	0.9893	0.0954	11.98	0.094	1.56	1/982	1/7748
SNV	Breast	CRYBG3_I2363V_8	HLA-A32:01	KVLNRDWVL	0.9861	0.929	0.2916	42.94	0.0964	1.75	1/982	1/7748
SNV	Breast	NCKAP1_T908A_3	HLA-A32:01	RMAIIGVIL	0.9246	0.9123	0.1598	34.54	0.0858	13.38	1/982	1/7748
SNV	Breast	NCKAP1_T908A_1	HLA-A32:01	AIIGVILSF	0.9825	0.9492	0.0208	3.01	0.0127	13.38	1/982	1/7748
SNV	Breast	PCDHB7_V660M_8	HLA-C03:04	SATATLHML	0.9996	0.9623	0.0816	37.8	0.1808	2.01	1/982	1/7748
SNV	Breast	RPL13A_N65K_1	HLA-B35:01	KPSRGPYHF	0.9132	0.809	0.1356	86.58	0.2935	862.43	1/982	1/7748
SNV	Breast	RUSC2_G1087V_1	HLA-A32:01	VLYNKVSQF	0.9949	0.8183	0.0914	5.05	0.0261	10.67	1/982	1/7748
SNV	Breast	RYR1_R367Q_8	HLA-B35:01	APDPKALQL	0.9497	0.6586	0.5483	64.95	0.2675	2.12	1/982	1/7748
SNV	Breast	RYR1_R367Q_8	HLA-C04:01	APDPKALQL	0.9997	0.904	0.0315	359.8	0.1307	2.12	1/982	1/7748
SNV	Breast	TP53_I255F_7	HLA-B35:01	RPILTIFTL	0.8936	0.8711	0.2064	304.51	0.4265	73.63	1/982	1/7748
SNV	Breast	WHAMM_I739V_9	HLA-C03:04	AVRPPHASV	0.6184	0.981	0.5709	301.95	0.421	6.74	1/982	1/7748
SNV	Breast	WHAMM_I739V_4	HLA-C03:04	HASVNEHIL	0.9995	0.9935	0.1971	234.34	0.383	6.74	1/982	1/7748
SNV	Breast	ZNF461_K504T_1	HLA-B35:01	TAFSYHSSF	0.9962	0.8239	0.0176	4.69	0.0868	3.45	1/982	1/7748
SNV	Breast	ZNF461_K504T_1	HLA-C03:04	TAFSYHSSF	0.9964	0.9876	0.1404	16.57	0.122	3.45	1/982	1/7748
SNV	Breast	ATAD5_P1415A_6	HLA-A02:01	VLEERALTL	0.9512	0.6186	0.912	92.18	0.381	2.8	1/982	1/7748
SNV	Breast	ATAD5_P1415A_6	HLA-C16:01	VLEERALTL	0.9836	0.9743	0.7761	182.48	0.5575	2.8	1/982	1/7748
SNV	Breast	ATAD5_P1415A_6	HLA-C17:01	VLEERALTL	0.8682	0.9516	0.0529	27.15	0.0819	2.8	1/982	1/7748
SNV	Breast	C5orf42_N2313K_8	HLA-A68:02	TVITEIPKHV	0.9925	0.5394	0.4649	253.06	0.3528	5.05	1/982	1/7748
SNV	Breast	C5orf42_N2313K_5	HLA-B45:01	TEIPKHVNL	0.9515	0.7645	0.1802	158.63	0.2412	5.05	1/982	1/7748
SNV	Breast	ENPEP_V97I_6	HLA-A02:01	RLPDFINPV	0.9979	0.7044	0.0238	1.43	0.0182	5.52	1/982	1/7748
SNV	Breast	ENPEP_V97I_7	HLA-A02:01	FRLPDFINPV	0.7071	0.6582	1.7203	28.04	0.246	5.52	1/982	1/7748
SNV	Breast	ENPEP_V97I_2	HLA-C16:01	FINPVHYDL	0.9928	0.961	0.6458	48.96	0.286	5.52	1/982	1/7748
SNV	Breast	ENPEP_V97I_6	HLA-C17:01	RLPDFINPV	0.642	0.9275	0.4286	82.16	0.187	5.52	1/982	1/7748
SNV	Breast	ENPEP_V97I_2	HLA-C17:01	FINPVHYDL	0.6654	0.664	0.1505	9.07	0.0339	5.52	1/982	1/7748
SNV	Breast	LMNA_R190Q_6	HLA-B45:01	DEMLRQVDA	0.9914	0.8695	0.185	351.73	0.3248	90.26	1/982	1/7748
SNV	Breast	PAICS_R331G_1	HLA-C16:01	GSNGLGPVM	0.7426	0.9801	0.5766	265.49	0.6578	48.03	1/982	1/7748
SNV	Breast	RBL1_I732L_8	HLA-C16:01	VANDAGELTL	0.9844	0.9793	0.2372	288.14	0.6817	6.48	1/982	1/7748
SNV	Breast	ATXN3_G51R_3	HLA-B44:03	AERGVTSEDY	0.9971	0.9238	0.083	9.71	0.1219	4.47	1/982	1/7748
SNV	Breast	CD1C_S62P_6	HLA-C04:01	GWDSEPGTI	0.9743	0.8511	0.0315	315.88	0.1225	1.37	1/982	1/7748
SNV	Breast	ELP6_K88R_3	HLA-B15:01	GLRSAVDVVF	0.9994	0.9334	0.6244	195.1	0.3681	24.49	1/982	1/7748
SNV	Breast	SLC40A1_P397H_8	HLA-C16:01	SVFMPGSHL	0.9723	0.9924	0.3205	13.1	0.1231	276.8	1/982	1/7748
SNV	Breast	SYT9_D443E_8	HLA-B15:01	HLSIAVMEY	0.9992	0.7074	0.0954	22.31	0.1491	2.7	1/982	1/7748
SNV	Breast	DDX41_P213A_3	HLA-A31:01	GIATILSGR	0.9457	0.5888	0.1921	171.38	0.2773	30.25	1/982	1/7748
SNV	Breast	DDX41_P213A_7	HLA-C03:04	IQIQGIATI	0.7507	0.9888	0.9426	173.46	0.3418	30.25	1/982	1/7748
SNV	Breast	EHHADH_P673R_10	HLA-A31:01	MFYASTVGLR	0.9862	0.5461	0.3076	275.86	0.3384	8.62	1/982	1/7748
SNV	Breast	EHHADH_P673R_6	HLA-C03:04	STVGLRTVL	0.9989	0.982	0.3025	76.15	0.2461	8.62	1/982	1/7748
SNV	Breast	HAAO_D251E_3	HLA-B35:01	APEDSLLVL	0.9713	0.9069	0.5556	41.53	0.2297	5.66	1/982	1/7748
SNV	Breast	HAAO_V63L_8	HLA-C03:04	YQLEGDMLL	0.9794	0.9904	1.0044	54.31	0.2105	5.66	1/982	1/7748
SNV	Breast	MFAP5_H106Y_2	HLA-A24:02	IYQLCFTSL	0.9837	0.6367	0.0224	91.75	0.4407	51.05	1/982	1/7748
SNV	Breast	NDUFS8_E87V_2	HLA-A31:01	FVKGPLSPR	0.9447	0.7894	0.1005	29.81	0.105	64.7	1/982	1/7748
SNV	Breast	NPHP4_F729L_8	HLA-A31:01	RYMVGPGLLK	0.9042	0.6313	0.578	272.62	0.3367	1.47	1/982	1/7748
SNV	Breast	NPHP4_F729L_8	HLA-A24:02	RYMVGPGLL	0.9834	0.6357	0.0304	2.94	0.0971	1.47	1/982	1/7748
SNV	Breast	PARP16_N259S_5	HLA-C03:04	FVVTSNQLL	0.9987	0.9934	0.0399	32.83	0.1713	18.78	1/982	1/7748
SNV	Breast	PTPRN2_Y934H_6	HLA-A31:01	KVNKCHRGR	0.9856	0.546	0.1243	17.3	0.0719	1.39	1/982	1/7748
SNV	Breast	SETX_R1926S_5	HLA-B35:01	TTSESIIAY	0.9268	0.7906	0.0922	3.81	0.074	12.85	1/982	1/7748
SNV	Breast	SFI1_M542T_6	HLA-C03:04	RLAERTAIL	0.9525	0.9815	1.7151	214.22	0.3707	8.56	1/982	1/7748
SNV	Breast	SLC2A9_Q316E_1	HLA-B35:01	EVVTVIVTM	0.943	0.83	0.4365	377.47	0.4536	2.07	1/982	1/7748
SNV	Breast	SPINT1_D188Y_9	HLA-B35:01	VLKDVENTY	0.7323	0.8947	0.382	285.73	0.4185	94.15	1/982	1/7748
SNV	Breast	ZBED2_V93L_9	HLA-C03:04	VSRGPGVNL	0.9966	0.9942	0.3088	202.15	0.3628	5.24	1/982	1/7748
SNV	Breast	ZBED2_V93L_4	HLA-C03:04	GVNLGTTAL	0.9943	0.9827	0.649	74.51	0.2438	5.24	1/982	1/7748
SNV	Breast	ACE_V258I_4	HLA-C16:01	HAFIRRAL	0.9849	0.962	0.1956	291.02	0.6846	1.55	1/982	1/7748
SNV	Breast	AGO4_E388K_4	HLA-A02:01	YLKKFGIVV	0.9732	0.5457	0.2054	146.64	0.4542	3.13	1/982	1/7748
SNV	Breast	DOCK6_A1273D_4	HLA-B15:03	QRWDTDLTL	0.6779	0.9235	1.0501	45.36	0.4037	3.48	1/982	1/7748
SNV	Breast	IGKV2D-30_Q26E_4	HLA-A02:01	VMTESPLSL	0.9902	0.5003	0.3359	14.41	0.1892	1.1	1/982	1/7748
SNV	Breast	IGKV2D-30_Q26E_2	HLA-B45:01	TESPLSLPV	0.9991	0.852	0.0143	25.58	0.1041	1.1	1/982	1/7748
SNV	Breast	IGKV2D-30_Q26E_4	HLA-B15:03	VMTESPLSL	0.8123	0.8541	0.408	332.78	0.8429	1.1	1/982	1/7748
SNV	Breast	IGKV2D-30_Q26E_4	HLA-C02:10	VMTESPLSL	0.638	0.9843	0.3851	205.73	0.2707	1.1	1/982	1/7748
SNV	Breast	IGKV2D-30_Q26E_4	HLA-C16:01	VMTESPLSL	0.9775	0.9802	0.3891	28.11	0.2037	1.1	1/982	1/7748
SNV	Breast	MED24_D634H_1	HLA-B15:03	HEREKSLQM	0.5055	0.6533	0.6613	25.96	0.3003	237.04	1/982	1/7748
SNV	Breast	PIK3C2B_C601S_2	HLA-C16:01	YSNTFNADF	0.549	0.9876	0.1001	213.61	0.5954	12.6	1/982	1/7748
SNV	Breast	SYNE1_V5596M_7	HLA-B15:03	LQYLTSMY	0.9104	0.6342	0.9486	55.65	0.4393	2.47	1/982	1/7748
SNV	Breast	SYNE1_V5596M_8	HLA-B15:03	KLQYLTSMY	0.5764	0.6053	0.9019	480.03	0.9372	2.47	1/982	1/7748
SNV	Breast	ZNF816_R409I_6	HLA-C16:01	NVYIRISHL	0.969	0.9725	1.1024	92.72	0.4097	5.23	1/982	1/7748
SNV	Breast	ABL2_E455Q_7	HLA-B15:03	IKWTAPQSL	0.5254	0.6699	1.3008	13.3	0.1971	38.48	1/982	1/7748
SNV	Breast	ABL2_E455Q_5	HLA-B15:03	WTAPQSLAY	0.8797	0.7815	0.3837	91.54	0.5315	38.48	1/982	1/7748
SNV	Breast	ARPC1B_D358N_10	HLA-A02:01	GMDGGMSIWNV	0.9869	0.5568	1.023	243.04	0.5385	55.93	1/982	1/7748
SNV	Breast	CBL_D501H_3	HLA-A02:01	RLHLLPQRV	0.977	0.8253	0.6165	434.91	0.6447	19.57	1/982	1/7748
SNV	Breast	CBL_D501H_1	HLA-A02:01	HLLPQRVCV	0.9881	0.906	0.8398	463.65	0.6588	19.57	1/982	1/7748
SNV	Breast	CCDC150_E927K_4	HLA-B15:03	KQMKLIKDQY	0.8576	0.5259	0.4221	16.93	0.2346	1.35	1/982	1/7748
SNV	Breast	CDK12_R902P_5	HLA-A02:01	TLWYPPPEL	0.9841	0.7897	0.5004	2.41	0.0539	16.04	1/982	1/7748
SNV	Breast	CDK12_R902P_5	HLA-A02:01	TLWYPPPELL	0.9438	0.7473	1.6374	45.84	0.2933	16.04	1/982	1/7748
SNV	Breast	CDK12_R902P_4	HLA-C04:01	LWYPPPELL	0.5767	0.8615	0.224	58.67	0.059	16.04	1/982	1/7748
SNV	Breast	CHPT1_L334V_6	HLA-A02:01	FLGPGVLFL	0.9944	0.8203	0.0123	1.15	0.0102	157.91	1/982	1/7748
SNV	Breast	CHPT1_L334V_7	HLA-B15:03	VFLGPGVLF	0.511	0.9673	1.1739	339.68	0.848	157.91	1/982	1/7748
SNV	Breast	CHPT1_L334V_6	HLA-C04:01	FLGPGVLFL	0.9943	0.9806	0.3734	165.14	0.089	157.91	1/982	1/7748
SNV	Breast	CHPT1_L334V_6	HLA-C02:10	FLGPGVLFL	0.5423	0.991	0.4148	17.37	0.0383	157.91	1/982	1/7748
SNV	Breast	CHRDL1_H26Y_5	HLA-B15:03	EQVKYSETY	0.5217	0.5339	0.0966	4.72	0.0907	1.95	1/982	1/7748
SNV	Breast	FIZ1_H24Y_9	HLA-B15:03	AAAPRVPFY	0.9757	0.7707	0.6105	20.36	0.2631	8.47	1/982	1/7748
SNV	Breast	KIF3A_E658D_7	HLA-A02:01	YLAYTEDSL	0.9775	0.6779	0.365	21.66	0.2241	4.83	1/982	1/7748
SNV	Breast	LCMT2_E219K_1	HLA-B15:03	KQMRPQDAF	0.8271	0.6816	0.0057	1.31	0.0087	4.4	1/982	1/7748
SNV	Breast	LRP4_D1303H_9	HLA-A02:01	GLMDMQAVHRA	0.9986	0.7177	0.9071	100.39	0.392	4.24	1/982	1/7748
SNV	Breast	LRP4_D1303H_2	HLA-B15:03	VHRAQPLGF	0.5009	0.8568	1.2919	23.09	0.2824	4.24	1/982	1/7748
SNV	Breast	MAP4K4_E225Q_1	HLA-A02:01	QMAEGAPPL	0.9759	0.692	0.1535	20.48	0.2194	47.77	1/982	2/7748
SNV	Breast	NDUFS5_R32G_5	HLA-B15:03	KMAGGCHAF	0.9294	0.8456	0.0245	8.22	0.1478	916.82	1/982	1/7748
SNV	Breast	NDUFS5_R32G_6	HLA-B15:03	YKMAGGCHAF	0.9887	0.8591	0.2824	4.65	0.0891	916.82	1/982	1/7748
SNV	Breast	NIN_L231V_9	HLA-A02:01	MLEEVFHNV	0.9992	0.7772	0.0731	1.8	0.0391	22.53	1/982	2/7748
SNV	Breast	PIR_E133Q_8	HLA-C02:10	MVEPQYQQL	0.8867	0.9405	0.2789	301.04	0.3436	7.2	1/982	1/7748
SNV	Breast	PMS1_K653N_2	HLA-B15:03	KNIKPTSAW	0.5953	0.8401	1.0593	318.59	0.8322	11.09	1/982	1/7748
SNV	Breast	SYCP2L_E781Q_2	HLA-B15:03	LQKEVLEF	0.9944	0.905	0.8091	34.37	0.3525	5.81	1/982	1/7748
SNV	Breast	SYCP2L_E781Q_3	HLA-B15:03	HLQKEVLEF	0.924	0.9048	0.1843	26.29	0.3027	5.81	1/982	1/7748
SNV	Breast	TCOF1_P1303L_2	HLA-A02:01	QLWPLNEAQV	0.9924	0.6245	0.9551	187.3	0.4961	17.82	1/982	1/7748
SNV	Breast	TOPBP1_E36Q_6	HLA-B15:03	KEFQSQEY	0.9362	0.6019	0.9221	42.18	0.3904	57.69	1/982	1/7748
SNV	Breast	U2AF2_P97L_7	HLA-C04:01	YWDVPPLGF	0.988	0.9354	0.0036	1.55	0.0032	97.69	1/982	1/7748
SNV	Breast	U2AF2_P97L_8	HLA-C04:01	KYWDVPPLGF	0.9991	0.9664	0.7286	75.18	0.0663	97.69	1/982	1/7748
SNV	Breast	XPO4_E91K_4	HLA-B15:03	GSIKSLRTF	0.9708	0.5305	0.1605	54.01	0.4341	34.41	1/982	1/7748
SNV	Breast	ZMYM2_E395Q_7	HLA-B15:03	AQVDSSQSF	0.9186	0.6787	0.0031	1.07	0.0023	64.05	1/982	1/7748
SNV	Breast	ZMYM2_E395Q_8	HLA-B15:03	VAQVDSSQSF	0.9956	0.6124	1.475	2.73	0.0433	64.05	1/982	1/7748
SNV	Breast	ZMYM2_E395Q_7	HLA-C02:10	AQVDSSQSF	0.7708	0.9483	0.5221	486.48	0.4633	64.05	1/982	1/7748
SNV	Breast	CST7_V34L_3	HLA-B27:05	SRLKPGFPK	0.9994	0.9423	0.0641	19.31	0.2452	6.21	1/982	1/7748
SNV	Breast	CST7_V34L_3	HLA-B27:05	SRLKPGFPKTI	1	0.928	0.1191	326.76	0.5459	6.21	1/982	1/7748
SNV	Breast	DYNC2H1_L3214I_2	HLA-C08:02	YISAAPESL	0.9671	0.9741	0.1759	433.08	0.1301	3.6	1/982	1/7748
SNV	Breast	ESRP1_D499G_1	HLA-B27:05	GRAFMAAQK	0.9987	0.7966	0.3115	49.68	0.3327	27.16	1/982	1/7748
SNV	Breast	FOXRED1_P424R_2	HLA-B27:05	GRHPLVVNM	0.9999	0.8555	0.077	1.11	0.0076	4.92	1/982	1/7748
SNV	Breast	FOXRED1_P424R_2	HLA-B27:05	GRHPLVVNMY	0.9999	0.9242	0.077	1.56	0.0407	4.92	1/982	1/7748
SNV	Breast	FOXRED1_P424R_2	HLA-B27:05	GRHPLVVNMYF	1	0.9022	0.0315	3.49	0.1113	4.92	1/982	1/7748
SNV	Breast	INTS6_V635L_9	HLA-C08:02	MIDEADEFL	0.9992	0.9659	0.0046	36.53	0.0424	2.35	1/982	1/7748
SNV	Breast	LIMA1_L332M_7	HLA-C08:02	SANENSMAV	0.9599	0.9821	0.2134	97.45	0.0648	46.1	1/982	1/7748
SNV	Breast	MRPL18_G9R_7	HLA-B14:02	SRFWRLFSV	0.9971	0.826	0.0259	70.22	0.0238	43.99	1/982	1/7748
SNV	Breast	MRPL18_G9R_7	HLA-B27:05	SRFWRLFSV	0.9998	0.9226	0.0346	6.79	0.1639	43.99	1/982	1/7748
SNV	Breast	MRS2_L338F_3	HLA-B14:02	MRFNLQLTM	0.9987	0.679	0.035	25.11	0.0108	9.55	1/982	1/7748
SNV	Breast	MRS2_L338F_3	HLA-B27:05	MRFNLQLTM	0.9999	0.924	0.011	1.09	0.0058	9.55	1/982	1/7748
SNV	Breast	NBEA_V2417G_5	HLA-A24:02	TFSSGARSW	0.9773	0.7131	0.4934	273.39	0.5928	2.89	1/982	1/7748
SNV	Breast	SZT2_R31C_8	HLA-B14:02	YRISRNVCL	0.9956	0.6142	0.0074	10.02	0.0073	5.68	1/982	1/7748
SNV	Breast	SZT2_R31C_8	HLA-B27:05	YRISRNVCL	0.9998	0.9246	0.3583	10.16	0.1966	5.68	1/982	1/7748
SNV	Breast	SZT2_R31C_5	HLA-B27:05	SRNVCLAWF	0.9969	0.8874	0.6984	417.85	0.5779	5.68	1/982	1/7748
SNV	Breast	TMEM63C_I131M_3	HLA-B27:05	ARMYIVFQY	0.9997	0.8503	0.0315	1.11	0.0076	5.58	1/982	1/7748
SNV	Breast	TMEM63C_I131M_3	HLA-B27:05	ARMYIVFQYH	0.9999	0.8462	0.8406	32.23	0.289	5.58	1/982	1/7748
SNV	Breast	UBR5_R2366I_6	HLA-B14:02	DRDFRIQL	0.9998	0.693	0.5515	421.76	0.079	19.45	1/982	1/7748
SNV	Breast	UBR5_R2366I_3	HLA-B27:05	FRIQLSIDTR	0.9998	0.8398	0.6148	113.28	0.4214	19.45	1/982	1/7748
SNV	Breast	UCP2_Y163F_10	HLA-B27:05	RRYQSTVNAF	1	0.6541	0.0034	1.78	0.0509	72.74	1/982	1/7748
SNV	Breast	UCP2_Y163F_10	HLA-B27:05	RRYQSTVNAFK	0.9999	0.6448	0.0055	258.3	0.5152	72.74	1/982	1/7748
SNV	Breast	XRN1_K630R_2	HLA-B27:05	YRIISLDAW	0.9948	0.873	0.9423	19.15	0.2445	7.22	1/982	1/7748
SNV	Breast	ASNSD1_P118A_9	HLA-A02:01	SLFSEVQGA	0.9841	0.5055	0.2414	6.5	0.1233	56.47	1/982	1/7748
SNV	Breast	ASNSD1_P118A_6	HLA-B18:01	SEVQGAWSF	0.9934	0.9233	0.0039	1.3	0.003	56.47	1/982	1/7748
SNV	Breast	ASNSD1_P118A_6	HLA-B18:01	SEVQGAWSFIY	0.9165	0.8078	0.4129	271.49	0.2192	56.47	1/982	1/7748
SNV	Breast	CYHR1_D309E_8	HLA-A02:01	LLLKGPYEDV	0.915	0.5114	0.861	71.36	0.3481	21.95	1/982	1/7748
SNV	Breast	DLG5_C195F_8	HLA-B18:01	YERLKIQF	0.9978	0.7992	0.2869	219.95	0.2048	20.01	1/982	1/7748
SNV	Breast	ABCB10_E391Q_6	HLA-B08:01	QLARKQAF	0.9943	0.5178	0.4998	226.93	0.2439	9.27	1/982	1/7748
SNV	Breast	ABCB10_E391Q_7	HLA-B08:01	MQLARKQAF	0.9576	0.7557	0.1141	247.59	0.2517	9.27	1/982	1/7748
SNV	Breast	CACNA1D_R1322Q_5	HLA-C07:01	FRLFQVMRL	0.999	0.794	0.0498	11.58	0.023	4.07	1/982	1/7748
SNV	Breast	GLUD2_A78T_7	HLA-C06:02	GFFDRGTSI	0.899	0.9964	0.4585	213.15	0.1354	3.16	1/982	1/7748
SNV	Breast	FOXRED1_V96L_9	HLA-C07:02	RRGAIRVLL	0.9555	0.9276	0.2126	73.42	0.1658	7.29	1/982	1/7748
SNV	Breast	ICE1_I199R_2	HLA-C07:02	SRDKRKVKL	0.811	0.927	0.1184	83.28	0.1764	33.61	1/982	1/7748
SNV	Breast	OSBPL11_L557F_3	HLA-C07:02	SLFEHGEEY	0.5977	0.9806	0.4095	316.73	0.3301	22.97	1/982	1/7748
SNV	Breast	STX3_L153H_7	HLA-C07:02	GRIQRQHEI	0.9183	0.9395	0.3064	89.93	0.1839	52.98	1/982	1/7748
SNV	Breast	ANKS6_K674I_9	HLA-B13:02	SQIAAQRKI	0.882	0.6773	0.1085	161.03	0.0669	2.1	1/982	1/7748
SNV	Breast	APOOL_I175N_9	HLA-A32:01	KVYATSQQNF	0.9977	0.961	0.4526	95.32	0.1408	6.79	1/982	1/7748
SNV	Breast	ASPM_L730I_9	HLA-C05:01	ISEVNAATI	0.9999	0.969	0.2016	374.5	0.3669	1.19	1/982	1/7748
SNV	Breast	CAPN1_N199H_3	HLA-A32:01	KVHGSYEAL	0.9695	0.9848	0.1505	316.24	0.2402	9.23	1/982	1/7748
SNV	Breast	GUCY1B3_K415R_1	HLA-C06:02	RRYDNVTI	0.9155	0.9701	0.7819	257.24	0.1461	5.18	1/982	1/7748
SNV	Breast	GUCY1B3_K415R_2	HLA-C06:02	ARRYDNVTIL	0.9165	0.9928	1.5979	137.14	0.1116	5.18	1/982	1/7748
SNV	Breast	GUCY1B3_K415R_1	HLA-C06:02	RRYDNVTILF	0.9292	0.9865	0.0735	17.02	0.036	5.18	1/982	1/7748
SNV	Breast	KAT2A_P405T_7	HLA-A32:01	AVVPSTTIF	0.9026	0.8986	0.3116	26.45	0.0717	5.47	1/982	1/7748
SNV	Breast	NTRK2_A440T_4	HLA-A32:01	VVITSVVGF	0.9331	0.8063	0.5065	33.9	0.0843	26.1	1/982	1/7748
SNV	Breast	SLC43A2_T422N_3	HLA-A32:01	KINNAMRAF	0.9904	0.9758	0.3314	7.3	0.0317	2.22	1/982	1/7748
SNV	Breast	TUBA1A_T56M_3	HLA-B13:02	SEMGAGKHV	0.9926	0.8317	0.0489	262.73	0.0967	56.44	1/982	1/7748
SNV	Breast	TUBA1A_T56M_3	HLA-B44:02	SEMGAGKHV	0.9164	0.5461	0.148	3.36	0.0576	56.44	1/982	1/7748
SNV	Breast	ZNF518B_L347F_3	HLA-B13:02	AQFIDVKV	0.9777	0.769	0.9281	492.78	0.1569	3.4	1/982	1/7748
SNV	Breast	ZNF518B_L347F_3	HLA-B13:02	AQFIDVKVV	0.9143	0.9573	0.1166	60.68	0.0305	3.4	1/982	1/7748
SNV	Breast	ARID4A_L125F_9	HLA-B18:01	SETLDQLPF	0.9764	0.9165	0.0544	134.9	0.176	9.52	1/982	1/7748
SNV	Breast	ATXN3_G51R_3	HLA-B15:03	AERGVTSEDY	0.8546	0.8353	1.1025	57.99	0.4465	3.09	1/982	1/7748
SNV	Breast	DNAJA3_G469E_4	HLA-B18:01	DEEEFLSKL	0.9968	0.9074	0.1321	91.36	0.1468	37.62	1/982	1/7748
SNV	Breast	GOLGA4_K407N_3	HLA-B18:01	KENSERAAF	0.9469	0.7523	0.1787	75.01	0.1373	61.43	1/982	1/7748
SNV	Breast	GPR34_I104M_9	HLA-C02:10	VAIADLLLM	0.8894	0.9144	0.1447	164.61	0.2345	11.89	1/982	1/7748
SNV	Breast	LRRN2_E479K_5	HLA-C02:10	RVYPKGTLEL	0.9983	0.977	0.6916	50.89	0.1061	17.53	1/982	1/7748
SNV	Breast	MED13L_L1115V_2	HLA-C02:10	IVSDSVMNI	0.5848	0.9633	0.3994	55.22	0.1129	42.49	1/982	1/7748
SNV	Breast	MED13L_L1115V_2	HLA-C05:01	IVSDSVMNI	0.9982	0.927	0.4627	95.27	0.217	42.49	1/982	1/7748
SNV	Breast	MED13L_L1115V_1	HLA-C05:01	VSDSVMNIF	0.9997	0.9299	0.1064	4.74	0.0542	42.49	1/982	1/7748
SNV	Breast	MTERF3_N212T_5	HLA-B15:03	FLTKTHAIF	0.7067	0.828	0.1089	232.96	0.7561	40.69	1/982	1/7748
SNV	Breast	MYCBPAP_H180L_9	HLA-C05:01	GSDQILPHL	1	0.9474	0.0246	6.77	0.071	4.37	1/982	1/7748
SNV	Breast	PEX6_V631M_2	HLA-C02:10	FMVGDLYAL	0.7087	0.9803	0.3666	155.25	0.225	43.24	1/982	1/7748
SNV	Breast	PEX6_V631M_1	HLA-C02:10	MVGDLYALL	0.5647	0.9648	0.359	224.55	0.2849	43.24	1/982	1/7748
SNV	Breast	PRKCE_H27Y_1	HLA-B15:03	YAVGPRPQTF	0.9994	0.5191	1.0661	86.29	0.5191	1.38	1/982	1/7748
SNV	Breast	PRKCE_H27Y_1	HLA-C02:10	YAVGPRPQTF	0.9967	0.9189	0.1144	169.26	0.239	1.38	1/982	1/7748
SNV	Breast	SLC5A6_A192D_3	HLA-C05:01	YTDLGGLKA	0.9997	0.9763	0.2274	27.96	0.1387	18.55	1/982	1/7748
SNV	Breast	SLC5A6_A192D_3	HLA-C05:01	YTDLGGLKAV	1	0.9836	0.0968	21.82	0.1273	18.55	1/982	1/7748
SNV	Breast	SQRDL_I191M_2	HLA-A02:02	AMFTFPNTPV	0.9941	0.507	0.0996	82.08	0.6413	53.31	1/982	1/7748
SNV	Breast	SQRDL_I191M_6	HLA-B18:01	KEGNAMFTF	0.9483	0.9727	0.2135	168.47	0.1887	53.31	1/982	1/7748
SNV	Breast	SYT12_S259F_3	HLA-A02:02	KLFVLDLPL	0.9872	0.5065	0.3605	358.22	1.0431	53.81	1/982	1/7748
SNV	Breast	UBR2_S917L_2	HLA-A02:02	WLESMLQRV	0.994	0.7808	0.5234	141.32	0.7693	21.08	1/982	1/7748
SNV	Breast	YARS_R325W_1	HLA-B18:01	WEKFNTPAL	0.9301	0.884	0.2361	149.99	0.1821	22.27	1/982	1/7748
SNV	Breast	YARS_R325W_6	HLA-C02:10	LLDPIWEKF	0.663	0.9912	0.5221	417.51	0.4195	22.27	1/982	1/7748
SNV	Breast	YARS_R325W_6	HLA-C05:01	LLDPIWEKF	0.9991	0.9569	0.0454	2.51	0.0336	22.27	1/982	1/7748
SNV	Breast	YME1L1_Q130H_5	HLA-B15:03	LKIGHIDQL	0.5715	0.636	1.4391	153.31	0.6507	50.1	1/982	1/7748
SNV	Breast	YME1L1_Q130H_1	HLA-C05:01	HIDQLVENL	0.9999	0.9843	0.032	17.37	0.1167	50.1	1/982	1/7748
SNV	Breast	ZNF630_I142F_9	HLA-B15:03	RVLRQVTVF	0.9448	0.5834	0.0824	18.86	0.2514	7.14	1/982	1/7748
SNV	Breast	ZNF630_I142F_9	HLA-C02:10	RVLRQVTVF	0.5731	0.9224	0.7986	279.57	0.3275	7.14	1/982	1/7748
SNV	Breast	PDE6D_D137N_6	HLA-A02:01	KFFDDNLLV	0.9634	0.5245	0.4542	172.14	0.4816	21.3	1/982	1/7748
SNV	Breast	PDE6D_D137N_5	HLA-C04:01	FFDDNLLV	0.9999	0.7212	0.0266	9.17	0.0206	21.3	1/982	1/7748
SNV	Breast	SEMA3G_E484D_4	HLA-A02:01	VLEDLQVFKV	0.995	0.7838	0.5972	196.03	0.5037	8.18	1/982	1/7748
SNV	Breast	SF3B1_K700E_8	HLA-A02:01	GLVDEQQEV	0.9975	0.5095	0.4121	1.78	0.0385	88	4/982	4/7748
SNV	Breast	GNAS_P335L_5	HLA-C08:02	ALDGLPIKV	0.9975	0.9962	0.0459	106.98	0.0669	384.82	1/982	1/7748
SNV	Breast	IREB2_P895R_10	HLA-A68:01	IGIAPLQFLR	0.9663	0.5433	1.267	379.57	0.6191	13.66	1/982	1/7748
SNV	Breast	WDR13_N389S_4	HLA-C08:02	VVDSEGTLQL	1	0.9837	0.0182	256.94	0.1079	70.1	1/982	1/7748
SNV	Breast	IGLV3-21_T36M_7	HLA-A68:02	SVAPGQMARI	0.9787	0.5312	0.5493	147.53	0.2726	1.45	1/982	1/7748
SNV	Breast	BAP1_T93A_2	HLA-C03:03	AAHALLSVL	0.9997	0.9915	0.0246	14.29	0.1072	34.47	1/982	1/7748
SNV	Breast	DNA2_T678A_5	HLA-A68:02	LTSYAHSAV	0.9829	0.6858	0.0938	166.43	0.2888	22.87	1/982	1/7748
SNV	Breast	DNA2_T678A_2	HLA-C03:03	YAHSAVDNI	0.9983	0.9853	0.0907	25.42	0.1559	22.87	1/982	1/7748
SNV	Breast	NUP188_A325V_8	HLA-A24:02	HHAPVLLVW	0.8266	0.8693	0.8303	207.86	0.5548	17.86	1/982	1/7748
SNV	Breast	PAXBP1_G217V_3	HLA-B53:01	RPVEIPDAAF	0.9394	0.5512	0.1336	65.7	0.1407	29.93	1/982	1/7748
SNV	Breast	PGS1_P132A_8	HLA-C03:03	SLYLGTGAL	0.9265	0.9885	0.9708	147.76	0.3198	17.11	1/982	1/7748
SNV	Breast	WFDC2_Q89E_8	HLA-C03:03	QVNINFPEL	0.9973	0.9881	0.5008	438.33	0.4813	354.36	1/982	1/7748
SNV	Breast	ZW10_T353A_5	HLA-C03:03	YSIPANSSKL	0.9995	0.9754	0.2194	107.91	0.2824	32.58	1/982	1/7748
SNV	Breast	BRWD1_W1082S_8	HLA-B35:01	SIIDDAWSF	0.977	0.9087	0.2356	10.26	0.1305	4.1	1/982	1/7748
SNV	Breast	BRWD1_W1082S_4	HLA-B35:01	DAWSFGTVL	0.9216	0.9478	0.3155	130.12	0.3344	4.1	1/982	1/7748
SNV	Breast	CDT1_V340L_9	HLA-B35:01	HPRFNVDEL	0.9526	0.6782	0.6559	24.2	0.1887	20.52	1/982	1/7748
SNV	Breast	CDT1_V340L_1	HLA-B35:01	LPDIEPAAL	0.9957	0.9831	0.274	3.71	0.0724	20.52	1/982	1/7748
SNV	Breast	DDX1_G478A_3	HLA-B35:01	RPAANSPEM	0.991	0.8564	0.2931	4.42	0.0832	176.72	1/982	1/7748
SNV	Breast	DDX60_T121R_7	HLA-B35:01	TTIDVRRTF	0.9858	0.898	0.3889	96.64	0.3039	2.23	1/982	1/7748
SNV	Breast	ENDOV_E34K_1	HLA-B35:01	KAWQRDPAF	0.8018	0.9185	0.2624	123.56	0.3291	2.94	1/982	1/7748
SNV	Breast	IGHA2_E261K_6	HLA-B44:02	QELPRKKYLTW	0.9995	0.7615	0.1065	7.34	0.0966	3.32	1/982	1/7748
SNV	Breast	MAST1_E264Q_7	HLA-B35:01	DAYERSQSL	0.9866	0.8831	0.7169	154.71	0.3521	5.1	1/982	1/7748
SNV	Breast	MTIF2_E336K_4	HLA-A02:05	ALAKATVAL	0.9907	0.7862	0.1695	7.74	0.0648	56.55	1/982	1/7748
SNV	Breast	NFATC3_I1026F_7	HLA-B35:01	EPNFATFGL	0.8403	0.7846	0.7169	371.71	0.4516	2.88	1/982	1/7748
SNV	Breast	PARD3B_E748D_3	HLA-A02:05	SLDSLQTAV	0.9915	0.5322	0.1614	100.63	0.2508	4.22	1/982	1/7748
SNV	Breast	SCO1_R13W_9	HLA-A23:01	VLVPGRVMW	0.8894	0.5129	0.977	117.62	0.4581	16.08	1/982	1/7748
SNV	Breast	SCO1_R13W_2	HLA-A23:01	MWPLGGQLW	0.9527	0.7247	0.1959	5.75	0.1494	16.08	1/982	1/7748
SNV	Breast	SCO1_R13W_3	HLA-A23:01	VMWPLGGQLW	0.9934	0.6925	0.522	21.59	0.2717	16.08	1/982	1/7748
SNV	Breast	SCO1_R13W_2	HLA-A23:01	MWPLGGQLWRF	0.9941	0.7245	0.277	331.25	0.6332	16.08	1/982	1/7748
SNV	Breast	SCO1_R13W_1	HLA-B35:01	WPLGGQLWRF	0.9968	0.9284	0.2421	356.62	0.4464	16.08	1/982	1/7748
SNV	Breast	TET3_S1283C_5	HLA-B35:01	YALPCFSYY	0.9968	0.8255	0.0073	57.08	0.2558	8.54	1/982	1/7748
SNV	Breast	UGGT1_R490W_9	HLA-B35:01	RPTFPGVIW	0.8523	0.9246	0.7024	257.72	0.4054	23.26	1/982	1/7748
SNV	Breast	VLDLR_D727N_8	HLA-B35:01	LPAPQINNH	0.9689	0.777	0.4668	317.96	0.4319	5.94	1/982	1/7748
SNV	Breast	VLDLR_D727N_4	HLA-B35:01	QINNHSPKY	0.8553	0.8236	0.8061	496.72	0.4882	5.94	1/982	1/7748
SNV	Breast	AP1M1_T328M_3	HLA-B58:01	KTMVGSVKW	0.9995	0.9624	0.0006	1.06	0.0025	14.02	1/982	1/7748
SNV	Breast	AP1M1_T328M_4	HLA-B58:01	FKTMVGSVKW	0.9682	0.9622	1.737	11.21	0.1486	14.02	1/982	1/7748
SNV	Breast	AP1M1_T328M_5	HLA-B58:01	KFKTMVGSVKW	0.9959	0.9787	1.1451	31.84	0.2462	14.02	1/982	1/7748
SNV	Breast	CXorf23_R7S_9	HLA-B58:01	RSRSSSPRW	0.9961	0.9329	0.0559	1.49	0.0183	2.57	1/982	1/7748
SNV	Breast	FAP_L212F_8	HLA-B58:01	MLATKYAFW	0.9915	0.959	0.1745	477.77	0.6517	5.55	1/982	1/7748
SNV	Breast	FAP_L212F_7	HLA-B58:01	LATKYAFWW	0.9959	0.9814	0.0158	20.18	0.2051	5.55	1/982	1/7748
SNV	Breast	OGDH_W653C_5	HLA-B58:01	RTVDCALAEY	0.9947	0.8919	0.4344	120.38	0.4187	44.78	1/982	1/7748
SNV	Breast	RBMS1_R281P_7	HLA-B58:01	YSIATNPMI	0.983	0.6181	0.5323	388.8	0.6061	6.64	1/982	1/7748
SNV	Breast	RUNX1_S229F_6	HLA-B58:01	ASLNHFTAF	0.9964	0.7872	0.0833	143.09	0.4434	11.94	1/982	1/7748
SNV	Breast	TFE3_R412W_8	HLA-B58:01	RSKDLESW	0.9993	0.9907	0.413	22.91	0.2166	24.99	1/982	1/7748
SNV	Breast	ZC2HC1A_R46W_7	HLA-B58:01	KTATKKWKTF	0.9963	0.7643	0.6199	168.3	0.4667	8.7	1/982	1/7748
SNV	Breast	CCR5_V134E_8	HLA-B15:01	YLAVVHAEF	0.9988	0.938	0.0344	97	0.2837	3.32	1/982	1/7748
SNV	Breast	CCR5_V134E_8	HLA-C03:03	YLAVVHAEF	0.9702	0.9833	1.0471	314.04	0.4273	3.32	1/982	1/7748
SNV	Breast	CRYL1_P237H_7	HLA-A24:02	RYAFIGHLETM	0.9999	0.6149	0.6046	193.7	0.5449	17.68	1/982	1/7748
SNV	Breast	CRYL1_P237H_8	HLA-C07:01	MRYAFIGHL	0.999	0.6275	0.0049	11.42	0.0226	17.68	1/982	1/7748
SNV	Breast	CRYL1_P237H_6	HLA-C03:03	YAFIGHLETM	0.9998	0.9861	0.1339	47.54	0.1975	17.68	1/982	1/7748
SNV	Breast	FOS_S4L_9	HLA-A02:01	FLGFNADYEA	0.9911	0.7472	1.2221	126.16	0.4285	43.4	1/982	1/7748
SNV	Breast	MRPL38_V175M_9	HLA-C03:03	FVPRVPLHM	0.9951	0.9871	0.0736	177.1	0.3447	5.26	1/982	1/7748
SNV	Breast	OBSCN_D6067V_7	HLA-A02:01	ILIEDPVGS	0.9683	0.721	1.5143	394.54	0.6232	3.24	1/982	1/7748
SNV	Breast	OBSCN_D6067V_7	HLA-A02:01	ILIEDPVGSCA	0.9874	0.6236	1.3178	281.71	0.5624	3.24	1/982	1/7748
SNV	Breast	PARD6G_R258H_4	HLA-C03:03	NVVHGGRAL	0.99	0.9198	0.185	281.8	0.4098	3.04	1/982	1/7748
SNV	Breast	POPDC3_D13N_1	HLA-B18:01	NEHPVCTTW	0.982	0.7882	0.0432	15.36	0.0742	2.37	1/982	1/7748
SNV	Breast	TAF1C_V402M_9	HLA-C07:01	TAHPRVLTM	0.9778	0.7646	0.2377	222.9	0.1199	14.17	1/982	1/7748
SNV	Breast	TAF1C_V402M_9	HLA-C03:03	TAHPRVLTM	0.9998	0.9845	0.0103	1.93	0.0157	14.17	1/982	1/7748
SNV	Breast	TAF1C_V402M_10	HLA-C03:03	FTAHPRVLTM	0.9996	0.9863	0.1623	226.82	0.3786	14.17	1/982	1/7748
SNV	Breast	THRAP3_S468L_2	HLA-A02:01	KLGKWEGLVYA	0.9838	0.7356	1.7557	29.99	0.2519	89.23	1/982	1/7748
SNV	Breast	THRAP3_S468L_2	HLA-B15:01	KLGKWEGLVY	0.9978	0.9811	0.3661	94.1	0.2809	89.23	1/982	1/7748
SNV	Breast	EHHADH_K338T_4	HLA-C03:04	TANTMITSV	0.9926	0.9845	0.4259	83.98	0.2563	1.97	1/982	1/7748
SNV	Breast	EHHADH_K338T_4	HLA-C12:03	TANTMITSV	0.9738	0.9713	0.1715	19.32	0.2045	1.97	1/982	1/7748
SNV	Breast	MCM7_R164H_4	HLA-A31:01	VTVHGIVTR	0.9481	0.6888	0.0646	31.73	0.11	80.71	1/982	1/7748
SNV	Breast	MCM7_R164H_3	HLA-C12:03	TVHGIVTRV	0.975	0.9803	0.7113	39.82	0.3287	80.71	1/982	1/7748
SNV	Breast	NAV3_S1670Y_3	HLA-C03:04	HSYESVSSI	0.998	0.9893	0.0561	5.16	0.051	4.08	1/982	1/7748
SNV	Breast	NAV3_S1670Y_3	HLA-C12:03	HSYESVSSI	0.9962	0.9739	0.0156	2.1	0.0113	4.08	1/982	1/7748
SNV	Breast	PPP1R12C_R707W_8	HLA-A02:01	ALTETTLWL	0.9899	0.7026	0.2101	9.06	0.1508	15.65	1/982	1/7748
SNV	Breast	PPP1R12C_R707W_3	HLA-A02:01	TLWLAQLKV	0.9851	0.6431	0.2414	16.33	0.2002	15.65	1/982	1/7748
SNV	Breast	PPP1R12C_R707W_1	HLA-A02:01	WLAQLKVEL	0.9934	0.6891	0.5905	34.74	0.2663	15.65	1/982	1/7748
SNV	Breast	PPP1R12C_R707W_10	HLA-B40:01	REALTETTLW	0.7721	0.5893	0.8478	367.52	0.608	15.65	1/982	1/7748
SNV	Breast	PPP1R12C_R707W_10	HLA-B40:01	REALTETTLWL	0.9862	0.5126	0.8942	52.64	0.3916	15.65	1/982	1/7748
SNV	Breast	ABCC9_T877M_1	HLA-C07:02	MHADWIIAM	0.7048	0.9696	0.0496	15.24	0.0662	4.2	1/982	1/7748
SNV	Breast	ABCC9_T877M_1	HLA-C07:01	MHADWIIAM	0.8139	0.6861	0.25	100.55	0.0873	4.2	1/982	1/7748
SNV	Breast	MAPKBP1_H771Y_5	HLA-B07:02	GPNRYQAPSM	0.9991	0.7607	0.1569	44.89	0.1979	4.28	1/982	1/7748
SNV	Breast	MAPKBP1_H771Y_9	HLA-C07:02	QRASGPNRY	0.8015	0.9441	0.3785	231.69	0.2872	4.28	1/982	1/7748
SNV	Breast	MAPKBP1_H771Y_3	HLA-C07:02	NRYQAPSML	0.8031	0.9483	0.0862	6.46	0.0303	4.28	1/982	1/7748
SNV	Breast	MAPKBP1_H771Y_9	HLA-C07:01	QRASGPNRY	0.9897	0.6486	0.25	345.52	0.1485	4.28	1/982	1/7748
SNV	Breast	MAPKBP1_H771Y_3	HLA-C07:01	NRYQAPSML	0.9974	0.6836	0.051	4.84	0.0093	4.28	1/982	1/7748
SNV	Breast	TMPO_E237K_8	HLA-B07:02	RPPLGSTKL	0.9985	0.6348	0.0297	3.36	0.0569	25.87	1/982	1/7748
SNV	Breast	ELP5_I121M_7	HLA-B35:03	DPVPVTMAL	0.9868	0.8833	0.0211	2.16	0.0079	12.65	1/982	1/7748
SNV	Breast	ELP5_I121M_9	HLA-C04:01	RTDPVPVTM	1	0.9274	0.0251	26.95	0.0417	12.65	1/982	1/7748
SNV	Breast	ROBO4_L585P_5	HLA-C04:01	FYGSPIAEL	0.542	0.5996	0.1305	70.8	0.0644	6.46	1/982	1/7748
SNV	Breast	BEST1_T363A_8	HLA-B35:01	RASFMGSAF	0.8578	0.9012	0.1165	218.87	0.3877	2.47	1/982	1/7748
SNV	Breast	BEST1_T363A_8	HLA-C12:03	RASFMGSAF	0.6082	0.9877	0.0775	8.47	0.1061	2.47	1/982	1/7748
SNV	Breast	BEST1_T363A_4	HLA-C12:03	MGSAFNISL	0.986	0.9867	0.3841	89.95	0.4946	2.47	1/982	1/7748
SNV	Breast	CCDC148_S260T_1	HLA-B18:01	TEEDHWIY	0.996	0.8842	0.29	59.9	0.1264	1.6	1/982	1/7748
SNV	Breast	FAT3_G1263V_9	HLA-C04:01	AFDAEKGVV	0.9986	0.9585	0.0198	260.1	0.1134	1.9	1/982	1/7748
SNV	Breast	KMT2C_H367D_3	HLA-C04:01	HYDGMCLDI	0.9865	0.7125	0.0366	405.88	0.1394	40.17	1/982	1/7748
SNV	Breast	MFSD1_R443C_1	HLA-B35:01	CAQGGNLNY	0.9556	0.9563	0.1356	96.09	0.3033	43.28	1/982	1/7748
SNV	Breast	RAB27A_H204Y_11	HLA-B35:01	IPEGVVRSNGY	0.997	0.8361	0.5029	427.82	0.4694	9.54	1/982	1/7748
SNV	Breast	TBC1D25_V485A_6	HLA-C04:01	TFEDAADHL	0.9919	0.8141	0.0171	27.58	0.0423	16.32	1/982	1/7748
SNV	Breast	ZNF649_R301T_5	HLA-C12:03	RAFSTKSL	0.9567	0.974	0.7194	282.66	0.8579	26.88	1/982	1/7748
SNV	Breast	ZNF649_R301T_5	HLA-C12:03	RAFSTKSLL	0.982	0.9786	0.065	4.25	0.0465	26.88	1/982	1/7748
SNV	Breast	COPG2_E141K_1	HLA-B27:05	KRYMKQAIV	0.9997	0.9086	0.395	216.42	0.4933	41.82	1/982	1/7748
SNV	Breast	DNAJC28_A273P_4	HLA-B27:05	LREPILVSR	0.9976	0.8202	0.3115	38.42	0.3053	1.09	1/982	1/7748
SNV	Breast	EGFL8_G13R_5	HLA-A02:06	TLLGRFSFL	0.9836	0.8731	0.1752	338.38	0.5031	1.81	1/982	1/7748
SNV	Breast	EGFL8_G13R_2	HLA-B27:05	GRFSFLLL	1	0.9688	1.1067	24.84	0.2663	1.81	1/982	1/7748
SNV	Breast	EGFL8_G13R_2	HLA-B27:05	GRFSFLLLL	0.9998	0.9112	0.0686	1.12	0.0079	1.81	1/982	1/7748
SNV	Breast	EGFL8_G13R_2	HLA-B27:05	GRFSFLLLLI	0.9998	0.89	0.2929	79.52	0.3828	1.81	1/982	1/7748
SNV	Breast	KATNB1_G464R_7	HLA-B27:05	TRNEPIRLK	0.9971	0.9319	0.2732	82.55	0.3868	6.85	1/982	1/7748
SNV	Breast	KATNB1_G464R_2	HLA-B27:05	IRLKASDFL	0.9992	0.8785	0.5683	251.48	0.5118	6.85	1/982	1/7748
SNV	Breast	LRP2_Q4540H_6	HLA-A02:06	VVQPIHVTV	0.9852	0.6707	0.6358	11.09	0.1275	10.85	1/982	1/7748
SNV	Breast	LRP2_Q4540H_7	HLA-A02:06	KVVQPIHVTV	0.965	0.5	0.716	223.6	0.4315	10.85	1/982	1/7748
SNV	Breast	PTDSS1_R22Q_2	HLA-A02:06	FQMINEQQV	0.9853	0.7886	0.3736	19.77	0.1634	58.11	1/982	1/7748
SNV	Breast	ACD_P77A_1	HLA-A02:01	ALHPLGVAV	0.9877	0.8428	0.1825	4.58	0.0976	16.9	1/982	1/7748
SNV	Breast	ARSB_W353C_5	HLA-A02:01	HISDCLPTL	0.9589	0.8267	0.1229	405.51	0.6292	9.16	1/982	1/7748
SNV	Breast	AUTS2_S688T_3	HLA-A02:01	FLTRPPGPSL	0.9037	0.8127	1.1183	70.22	0.3461	9.96	1/982	1/7748
SNV	Breast	DHRS13_R103P_6	HLA-A02:01	SLASVPAFA	0.9902	0.5222	0.1371	19.19	0.2139	3.6	1/982	1/7748
SNV	Breast	DPYSL3_E232K_4	HLA-B44:03	EELKAEAVF	0.9989	0.959	0.0425	5.2	0.0896	73.49	1/982	2/7748
SNV	Breast	MYO9A_R333W_3	HLA-B44:03	NEWNYHVFY	0.9975	0.8155	0.0469	1.97	0.0372	3.65	1/982	1/7748
SNV	Breast	MYO9A_R333W_3	HLA-B44:03	NEWNYHVFYY	0.9981	0.7465	0.2632	31.46	0.1856	3.65	1/982	1/7748
SNV	Breast	NFKBIZ_S482I_3	HLA-A02:01	GQIAFQVAV	0.99	0.6629	0.2931	29.04	0.249	29.06	1/982	1/7748
SNV	Breast	NFKBIZ_S482I_7	HLA-B44:03	KEHNGQIAF	0.9963	0.7455	0.029	2.4	0.0476	29.06	1/982	1/7748
SNV	Breast	PRUNE2_L2810V_9	HLA-A02:01	KLTAPNINV	0.9863	0.6885	0.3974	6.93	0.1285	3.46	1/982	1/7748
SNV	Breast	SDK1_R1193H_8	HLA-B44:03	SETSLRLHW	0.9997	0.9834	0.0009	1.12	0.0046	3.67	1/982	1/7748
SNV	Breast	SDK1_R1193H_8	HLA-B44:03	SETSLRLHWV	0.9206	0.9842	0.89	304.13	0.3699	3.67	1/982	1/7748
SNV	Breast	SH3D19_D765Y_8	HLA-B44:03	TELESVDYDW	0.9985	0.8061	0.029	4.39	0.0812	19.14	1/982	1/7748
SNV	Breast	SH3D19_D765Y_2	HLA-C04:01	DYDWMSGEL	0.9543	0.8089	0.1251	174.89	0.0922	19.14	1/982	1/7748
SNV	Breast	SMARCC2_K85E_5	HLA-A02:01	FLDFEAGGSL	0.9799	0.7174	0.7351	144.65	0.4519	23	1/982	1/7748
SNV	Breast	DAAM1_K5Q_7	HLA-C07:01	QRGGRGISF	0.9941	0.7547	0.1643	132.33	0.1005	9.7	1/982	1/7748
SNV	Breast	DMXL2_L1340I_5	HLA-C12:02	AAHVISPTL	0.9971	0.9792	0.0761	155.74	0.2369	3.21	1/982	1/7748
SNV	Breast	DMXL2_L1340I_2	HLA-C12:02	VISPTLPQY	0.817	0.9513	0.1549	333.87	0.3857	3.21	1/982	1/7748
SNV	Breast	GALNT7_L82I_3	HLA-B52:01	VDIESIRRI	0.9563	0.8098	0.4914	115.1	0.0179	6.49	1/982	1/7748
SNV	Breast	NEDD4_T694I_2	HLA-C12:02	AIMYSNQAF	0.862	0.9852	0.836	403.34	0.4247	2.04	1/982	1/7748
SNV	Breast	SLC24A1_M208V_3	HLA-C12:02	MTVETSHAI	0.9501	0.9736	0.0703	61.64	0.1246	3.61	1/982	1/7748
SNV	Breast	YOD1_L271V_5	HLA-C07:01	HYDPVQRNF	0.9918	0.7557	0.1315	106.94	0.0897	7.47	1/982	1/7748
SNV	Breast	ZER1_L177P_4	HLA-C12:02	FSRPRFLNL	0.9888	0.9445	0.0875	135.59	0.2186	23.58	1/982	1/7748
SNV	Breast	ZNF780B_Q207K_8	HLA-C12:02	KAFQLHIKL	0.6078	0.9719	0.1521	95.21	0.176	1.05	1/982	1/7748
SNV	Breast	APH1A_A65D_1	HLA-B38:01	DRLQYGLLI	0.9602	0.9824	0.111	73.71	0.0578	88.63	1/982	1/7748
SNV	Breast	ATF1_T142I_2	HLA-C14:02	SIQQGTTIL	0.9027	0.8847	0.955	113.03	0.5339	7.1	1/982	1/7748
SNV	Breast	ATF1_T142I_9	HLA-C12:03	LTMTNSGSI	0.7939	0.9754	0.8772	453.23	1.0345	7.1	1/982	1/7748
SNV	Breast	ATF1_T142I_3	HLA-C12:03	GSIQQGTTI	0.7695	0.9644	0.77	204.27	0.7409	7.1	1/982	1/7748
SNV	Breast	ATF1_T142I_2	HLA-C12:03	SIQQGTTIL	0.9506	0.9486	0.5869	275.58	0.8492	7.1	1/982	1/7748
SNV	Breast	CCDC6_E166V_6	HLA-B38:01	QHLEQVQEF	0.993	0.9912	0.0163	6.23	0.0087	17.04	1/982	1/7748
SNV	Breast	CD109_V225I_1	HLA-C14:02	ILPKFEVTL	0.8386	0.9814	0.2754	424.46	1.0018	6.6	1/982	1/7748
SNV	Breast	CHST15_W464R_5	HLA-C14:02	YLLDRLSVF	0.8377	0.9846	0.0434	7.03	0.1144	9.97	1/982	1/7748
SNV	Breast	CHST15_W464R_6	HLA-C14:02	VYLLDRLSVF	0.9675	0.9693	1.5514	192.63	0.6791	9.97	1/982	1/7748
SNV	Breast	CHST15_W464R_8	HLA-C12:03	YAVYLLDRL	0.9231	0.9804	0.8011	104.83	0.5348	9.97	1/982	1/7748
SNV	Breast	CHST15_W464R_5	HLA-C12:03	YLLDRLSVF	0.9949	0.9929	0.2647	10.78	0.1315	9.97	1/982	1/7748
SNV	Breast	FMO2_R244H_6	HLA-B38:01	FRSMLHNVL	0.997	0.943	0.069	225.87	0.1166	25.13	1/982	1/7748
SNV	Breast	ICK_R280P_2	HLA-B51:01	LPYPYFQVG	0.9454	0.516	0.5345	336.98	0.3803	5.07	1/982	1/7748
SNV	Breast	KCNJ2_A131T_7	HLA-C14:02	EVNSFTTAF	0.6738	0.9207	1.7809	88.47	0.4724	2.81	1/982	1/7748
SNV	Breast	MYO5B_Q225K_8	HLA-B38:01	SRFGKYIKI	0.9681	0.6978	0.1	303.14	0.1388	2.8	1/982	1/7748
SNV	Breast	NLRP3_V72M_6	HLA-A24:02	AWAMAMWIF	0.9469	0.6473	0.0855	13.28	0.2397	2.8	1/982	1/7748
SNV	Breast	NLRP3_V72M_3	HLA-B51:01	MAMWIFAAI	0.9703	0.7704	0.0114	360.57	0.3898	2.8	1/982	1/7748
SNV	Breast	NLRP3_V72M_3	HLA-C12:03	MAMWIFAAI	0.9341	0.9904	0.0638	174.47	0.6841	2.8	1/982	1/7748
SNV	Breast	NR2C2_S307R_3	HLA-C12:03	SAREITRAF	0.933	0.978	0.0334	2.5	0.0201	3.07	1/982	1/7748
SNV	Breast	PKP2_E769G_4	HLA-C12:03	IAKGTLPDL	0.9477	0.972	0.1394	124.57	0.5809	2.13	1/982	1/7748
SNV	Breast	PKP2_E769G_1	HLA-C12:03	GTLPDLVSI	0.9329	0.9702	1.4492	297.28	0.8752	2.13	1/982	1/7748
SNV	Breast	STK35_S499A_3	HLA-C14:02	SMAEGIKQL	0.9836	0.9392	0.1508	28.36	0.2583	7.46	1/982	1/7748
SNV	Breast	STK35_S499A_3	HLA-C12:03	SMAEGIKQL	0.9994	0.962	0.2004	29.14	0.2711	7.46	1/982	1/7748
SNV	Breast	STK35_S499A_2	HLA-C12:03	MAEGIKQLL	0.9565	0.9659	0.2956	283.66	0.8591	7.46	1/982	1/7748
SNV	Breast	TACR1_V66L_4	HLA-B38:01	MRTLTNYFL	0.9929	0.9514	0.2594	111.36	0.0754	3.77	1/982	1/7748
SNV	Breast	TACR1_V66L_9	HLA-C12:03	LAHKRMRTL	0.9485	0.9778	0.0415	11.4	0.1378	3.77	1/982	1/7748
SNV	Breast	TBC1D8_V868L_9	HLA-A24:02	QFAHLFQLL	0.9714	0.5383	0.1053	61.14	0.3876	10.7	1/982	1/7748
SNV	Breast	TET3_D1052N_4	HLA-C12:03	IAINCRLGL	0.9982	0.9754	0.1451	137.46	0.6086	2.07	1/982	1/7748
SNV	Breast	CELF2_L315H_5	HLA-A02:01	ALGAHTSPV	0.9807	0.6913	0.1038	278.11	0.5604	33.06	1/982	1/7748
SNV	Breast	F8_D1391Y_9	HLA-B15:01	AITQSPLSY	0.9908	0.748	0.1821	15.02	0.121	9.83	1/982	1/7748
SNV	Breast	F8_D1391Y_10	HLA-B15:01	GAITQSPLSY	0.9978	0.6886	0.7262	191.62	0.3657	9.83	1/982	1/7748
SNV	Breast	FCN1_S315T_8	HLA-B15:01	AAKGYKYTY	0.9956	0.9042	0.2825	16.81	0.1284	9.4	1/982	1/7748
SNV	Breast	FCN1_S315T_9	HLA-B15:01	SAAKGYKYTY	0.9961	0.9033	1.7481	176.55	0.3551	9.4	1/982	1/7748
SNV	Breast	FCN1_S315T_3	HLA-C07:02	KYTYKVSEM	0.6561	0.9027	0.6066	210.46	0.2759	9.4	1/982	1/7748
SNV	Breast	FERMT3_Y253S_8	HLA-B15:01	ALWLRFKSY	0.9541	0.8774	0.3275	415.9	0.4871	48.56	1/982	1/7748
SNV	Breast	FERMT3_Y253S_5	HLA-C07:02	LRFKSYSFF	0.8959	0.8607	0.0262	40.39	0.1167	48.56	1/982	1/7748
SNV	Breast	KIAA1468_A214S_2	HLA-C03:03	KSKETIQAL	0.9974	0.9813	0.0794	146.56	0.3187	25.38	1/982	1/7748
SNV	Breast	KIF7_S1094L_5	HLA-A02:01	YLSSLETRA	0.992	0.6521	0.354	149.32	0.4573	3.94	1/982	1/7748
SNV	Breast	KIF7_S1094L_3	HLA-C03:03	SSLETRALL	0.9992	0.9863	0.2228	183.36	0.3494	3.94	1/982	1/7748
SNV	Breast	NKD1_I325M_6	HLA-A02:01	FLDTPMAKV	0.9986	0.7392	0.0861	1.29	0.0138	1.16	1/982	1/7748
SNV	Breast	PDHX_G443E_3	HLA-A03:01	AVERFRPVLK	0.9876	0.5339	0.5529	98.08	0.2794	46.85	1/982	1/7748
SNV	Breast	PDHX_G443E_1	HLA-C07:02	ERFRPVLKL	0.8607	0.8991	0.1399	32.98	0.1036	46.85	1/982	1/7748
SNV	Breast	PTPRH_P591R_5	HLA-B07:02	APGDRHSQL	0.9998	0.5746	0.0338	1.6	0.0234	1.41	1/982	1/7748
SNV	Breast	PTPRH_P591R_6	HLA-B07:02	KAPGDRHSQL	0.9877	0.6222	1.4478	217.47	0.3286	1.41	1/982	1/7748
SNV	Breast	SLC16A4_A183G_6	HLA-C03:03	LILFGGIAL	0.9886	0.9713	0.4154	153.69	0.3252	39.09	1/982	1/7748
SNV	Breast	STAP1_R13S_4	HLA-B07:02	APRSIFQERL	0.9983	0.506	0.2682	2.54	0.0436	8.83	1/982	1/7748
SNV	Breast	ZNF366_I272M_9	HLA-C07:02	SKYNLVTHM	0.7947	0.9277	0.3785	431.13	0.3756	5.53	1/982	1/7748
SNV	Breast	ZNF366_I272M_8	HLA-C07:02	KYNLVTHML	0.5597	0.9431	0.2455	21.83	0.0802	5.53	1/982	1/7748
SNV	Breast	ZNF366_R140H_5	HLA-B15:01	FQFYHSLEHF	0.9999	0.9264	0.1177	386.76	0.4747	5.53	1/982	1/7748
SNV	Breast	ZNF366_R140H_7	HLA-C03:03	VGFQFYHSL	0.9797	0.9827	0.7719	319.49	0.4301	5.53	1/982	1/7748
SNV	Breast	ZNF684_R281S_4	HLA-C03:03	KTFSYSSSL	0.988	0.9536	0.1061	16.83	0.1235	3.29	1/982	1/7748
SNV	Breast	ATP1B1_Q79H_9	HLA-B15:01	RVAPPGLTH	0.9959	0.9497	0.8738	319.72	0.4424	30.76	1/982	1/7748
SNV	Breast	ATP1B1_Q79H_8	HLA-C01:02	VAPPGLTHI	0.8044	0.9531	0.002	492.65	0.0513	30.76	1/982	1/7748
SNV	Breast	EFCAB7_V302L_8	HLA-B15:01	QIAQRSMLY	0.9991	0.9225	0.3063	75.1	0.2601	2.15	1/982	1/7748
SNV	Breast	EFCAB7_V302L_9	HLA-B15:01	MQIAQRSMLY	1	0.9313	0.1375	29.72	0.17	2.15	1/982	1/7748
SNV	Breast	JPH2_E669K_4	HLA-B13:02	VEVKEVPNTI	0.9787	0.6138	0.2414	271.12	0.099	2.04	1/982	1/7748
SNV	Breast	PTPRD_S797F_9	HLA-A02:01	GLQPETSYFL	0.9808	0.6924	0.5649	186.89	0.4957	8.88	1/982	1/7748
SNV	Breast	PTPRD_S797F_9	HLA-B15:01	GLQPETSYF	0.9949	0.947	0.2886	20.48	0.1429	8.88	1/982	1/7748
SNV	Breast	RAB19_F37C_4	HLA-B15:01	VQHCKSGVY	0.9997	0.7095	0.0291	21.69	0.1471	1.34	1/982	1/7748
SNV	Breast	RECQL_L286Q_8	HLA-B15:01	ASFNRPNQY	0.9877	0.9187	0.2825	8.57	0.0828	16.41	1/982	1/7748
SNV	Breast	RECQL_L286Q_8	HLA-B15:01	ASFNRPNQYY	0.9989	0.9063	0.6342	150.29	0.334	16.41	1/982	1/7748
SNV	Breast	USP24_D239G_6	HLA-C12:02	MAFNPGNEY	0.8994	0.9762	0.0125	3.13	0.008	16.83	1/982	1/7748
SNV	Breast	AOX1_R58L_2	HLA-A02:01	SLYNPITKRI	0.9146	0.6357	1.2794	395.37	0.6237	6.71	1/982	1/7748
SNV	Breast	CBFB_N63S_7	HLA-C12:03	FVATGTSL	0.9994	0.9944	0.8996	301.45	0.8799	55.06	1/982	1/7748
SNV	Breast	CBFB_N63S_6	HLA-C12:03	VATGTSLSL	0.9826	0.9896	0.0612	14.11	0.166	55.06	1/982	1/7748
SNV	Breast	CBFB_N63S_9	HLA-C12:03	IAFVATGTSL	0.9955	0.9944	0.1836	148.87	0.6338	55.06	1/982	1/7748
SNV	Breast	CDK12_N939S_1	HLA-C17:01	SLELAQLEL	0.7828	0.9756	0.4099	476.83	0.4691	19.18	1/982	1/7748
SNV	Breast	CSTF3_P116S_7	HLA-A25:01	ETKGKLSSY	0.9946	0.7994	0.0111	10.53	0.008	23.07	1/982	1/7748
SNV	Breast	DHRS2_T278A_7	HLA-C12:03	AVAGYSARL	0.981	0.9869	1.3825	44.99	0.3499	15.04	3/982	3/7748
SNV	Breast	DHRS2_T278A_7	HLA-C12:03	AVAGYSARL	0.981	0.9869	1.3825	44.99	0.3499	15.04	3/982	3/7748
SNV	Breast	DHRS2_T278A_7	HLA-C12:03	AVAGYSARL	0.981	0.9869	1.3825	44.99	0.3499	15.04	3/982	3/7748
SNV	Breast	GAPVD1_I1445F_6	HLA-C12:03	STVQYFSSF	0.8461	0.9208	0.0979	22.25	0.2257	15.61	1/982	1/7748
SNV	Breast	IL7R_N182Y_1	HLA-A02:01	YLSSTKLTL	0.9866	0.5216	0.1229	8.41	0.1446	3.94	1/982	1/7748
SNV	Breast	IL7R_N182Y_9	HLA-B18:01	DENKWTHVY	0.9993	0.8153	0.0056	1.23	0.0024	3.94	1/982	1/7748
SNV	Breast	IL7R_N182Y_1	HLA-C17:01	YLSSTKLTL	0.6656	0.5801	0.0634	17.58	0.059	3.94	1/982	1/7748
SNV	Breast	IL7R_N182Y_3	HLA-C12:03	HVYLSSTKL	0.9599	0.9691	0.5118	4.51	0.0514	3.94	1/982	1/7748
SNV	Breast	IL7R_N182Y_1	HLA-C12:03	YLSSTKLTL	0.9981	0.9791	0.3548	44.41	0.3477	3.94	1/982	1/7748
SNV	Breast	KCNJ12_G30S_8	HLA-C12:03	VTMSGANSF	0.8056	0.992	0.0436	8.15	0.102	1.13	1/982	1/7748
SNV	Breast	SLC30A6_S354A_5	HLA-A02:01	VLNFADHHV	0.9914	0.6175	0.1259	11.1	0.167	26.48	1/982	1/7748
SNV	Breast	SLC30A6_S354A_2	HLA-C17:01	FADHHVIPM	0.7822	0.9613	0.0015	23.3	0.0739	26.48	1/982	1/7748
SNV	Breast	SLC30A6_S354A_2	HLA-C12:03	FADHHVIPM	0.9875	0.9807	0.0461	31.73	0.2878	26.48	1/982	1/7748
SNV	Breast	WFS1_Y444F_6	HLA-C17:01	FTVTSFLSL	0.7785	0.958	0.0359	125.68	0.2385	54.01	1/982	1/7748
SNV	Breast	WFS1_Y444F_9	HLA-C12:03	TGFFTVTSF	0.7082	0.9918	0.9184	21.72	0.2221	54.01	1/982	1/7748
SNV	Breast	WFS1_Y444F_6	HLA-C12:03	FTVTSFLSL	0.9918	0.9852	0.0096	16.47	0.1856	54.01	1/982	1/7748
SNV	Breast	ABCA12_F1207L_6	HLA-A02:01	YVLKVLMSL	0.9728	0.5963	0.0775	58.25	0.322	7.16	1/982	1/7748
SNV	Breast	ABCA12_F1207L_6	HLA-C02:02	YVLKVLMSL	0.8362	0.9816	0.1405	114.8	0.1766	7.16	1/982	1/7748
SNV	Breast	AMER1_N799S_1	HLA-A02:01	SLPELPPMV	0.9967	0.7838	0.192	1.4	0.0173	2.79	1/982	1/7748
SNV	Breast	AMER1_N799S_1	HLA-A24:02	SLPELPPMVTF	0.9995	0.6585	0.6448	78.47	0.4188	2.79	1/982	1/7748
SNV	Breast	ARHGAP4_L158R_7	HLA-A02:01	QLQDELREV	0.9969	0.7413	0.6195	32.35	0.2594	7.57	1/982	1/7748
SNV	Breast	B3GALT5_R279G_1	HLA-B27:02	GRIVACHFI	0.9994	0.8018	0.484	396.26	0.5498	9.16	1/982	1/7748
SNV	Breast	CBX2_G367W_3	HLA-B54:01	MPWVGLLA	0.9992	0.888	0.0691	31.97	0.0513	6.95	1/982	1/7748
SNV	Breast	CEP350_E2605V_3	HLA-B27:02	DRVKDVSEYF	0.9996	0.5076	0.9033	231.61	0.4873	23.71	1/982	1/7748
SNV	Breast	CEP350_E2605V_2	HLA-C02:02	RVKDVSEYF	0.7249	0.9619	0.1174	20.27	0.047	23.71	1/982	1/7748
SNV	Breast	DHX36_C234Y_2	HLA-A24:02	GYGKTTQVTQF	0.9978	0.5452	0.3345	144.27	0.504	14.04	1/982	1/7748
SNV	Breast	DHX9_I23V_6	HLA-B54:01	TPSYEVRAV	0.9787	0.6516	0.304	254.13	0.1538	143.66	1/982	1/7748
SNV	Breast	DUS3L_E577V_4	HLA-A02:01	FLLVWLSFL	0.9582	0.6426	0.01	338.91	0.5924	14.22	1/982	1/7748
SNV	Breast	DUS3L_E577V_5	HLA-A24:02	RFLLVWLSF	0.9798	0.8057	0.0488	19.97	0.2742	14.22	1/982	1/7748
SNV	Breast	FLT4_V689A_7	HLA-A02:01	NLTDLLANV	0.9961	0.6646	0.1909	2.44	0.0544	3.62	1/982	1/7748
SNV	Breast	IGFALS_L361F_4	HLA-A02:01	FLGFTNVAV	0.995	0.8735	0.0338	6.46	0.1229	11.46	1/982	1/7748
SNV	Breast	IGFALS_L361F_9	HLA-B27:02	VKAGAFLGF	0.9822	0.5146	1.9726	350.07	0.5352	11.46	1/982	1/7748
SNV	Breast	IGFALS_L361F_1	HLA-C02:02	FTNVAVMNL	0.7994	0.9732	0.1664	33.84	0.0758	11.46	1/982	1/7748
SNV	Breast	IL18_F83L_5	HLA-B27:02	PRTILIISM	0.9986	0.5597	1.2702	136.58	0.4283	9.38	1/982	1/7748
SNV	Breast	MNS1_R311L_2	HLA-A02:01	LLQREDLEQV	0.9753	0.7448	0.8325	126.86	0.4294	11.08	1/982	1/7748
SNV	Breast	MNS1_R311L_3	HLA-A02:01	MLLQREDLEQV	0.9975	0.6006	0.8054	61.65	0.3293	11.08	1/982	1/7748
SNV	Breast	MUM1L1_V610L_6	HLA-A02:01	QLDEVLKYL	0.9937	0.5865	0.363	3.16	0.0697	4.63	1/982	1/7748
SNV	Breast	PCDH19_R284C_5	HLA-C02:02	YVNDCTREL	0.9194	0.9581	0.0551	17.43	0.0385	2.61	1/982	1/7748
SNV	Breast	PSMB1_Q180L_9	HLA-A02:01	MLQPLLDNL	0.987	0.6002	0.2851	23.08	0.2295	352.01	1/982	1/7748
SNV	Breast	SLC44A3_L330Q_1	HLA-A24:02	QFQPLWTF	0.9969	0.8158	1.0068	13.02	0.238	6.87	1/982	1/7748
SNV	Breast	SLC44A3_L330Q_4	HLA-A24:02	PFLQFQPLW	0.9805	0.9114	0.4816	15.51	0.2526	6.87	1/982	1/7748
SNV	Breast	SLC44A3_L330Q_2	HLA-A24:02	LQFQPLWTF	0.9728	0.8467	0.0933	88.5	0.4356	6.87	1/982	1/7748
SNV	Breast	SLC44A3_L330Q_2	HLA-B27:02	LQFQPLWTF	0.9263	0.8156	0.1638	52.33	0.3343	6.87	1/982	1/7748
SNV	Breast	TOR1A_L192P_7	HLA-A02:01	FLDYYDPVDGV	0.9984	0.5665	1.8118	3.98	0.083	34.72	1/982	1/7748
SNV	Breast	TRIOBP_L1139H_6	HLA-A02:01	LLFQDHPRA	0.992	0.7398	0.4044	110.07	0.4051	4.18	1/982	1/7748
SNV	Breast	WASL_M41I_9	HLA-A02:01	FLGKKCVTI	0.959	0.5532	0.2298	133.39	0.438	74.64	1/982	1/7748
SNV	Breast	ANXA11_A389D_4	HLA-C17:01	RSRDHLVAV	0.5904	0.9921	0.1566	492.33	0.4764	74.55	1/982	1/7748
SNV	Breast	ANXA11_A389D_3	HLA-C07:02	SRDHLVAVF	0.9758	0.9094	0.024	16.06	0.0685	74.55	1/982	1/7748
SNV	Breast	C1QTNF3_V162L_10	HLA-C07:02	GRFGAPVSGL	0.9955	0.9477	0.2865	425.59	0.3736	4.42	1/982	1/7748
SNV	Breast	CCDC40_Q1091K_5	HLA-C07:02	FRSKKSLVL	0.9588	0.8689	0.0187	7.22	0.0342	4.24	1/982	1/7748
SNV	Breast	FLRT2_V65I_5	HLA-B35:01	IPEGITVLY	0.9973	0.9295	0.034	1.13	0.0086	1.88	1/982	1/7748
SNV	Breast	FLRT2_V65I_5	HLA-B35:01	IPEGITVLYL	0.9621	0.9427	0.5483	306.8	0.4274	1.88	1/982	1/7748
SNV	Breast	LDOC1_M110I_4	HLA-C05:01	YIEIDSPIL	0.9998	0.8315	0.1573	17.35	0.1166	157.47	1/982	1/7748
SNV	Breast	MACF1_A6892S_5	HLA-B44:02	EELLSWIQW	0.9982	0.7558	0.0116	1.76	0.0259	51.5	1/982	1/7748
SNV	Breast	MACF1_A6892S_9	HLA-B44:02	AELLEELLSW	0.9996	0.6289	0.0063	1.51	0.0198	51.5	1/982	1/7748
SNV	Breast	MACF1_A6892S_6	HLA-B44:02	LEELLSWIQW	0.9951	0.7864	0.1815	419.56	0.3851	51.5	1/982	1/7748
SNV	Breast	ST6GALNAC3_G91D_3	HLA-C05:01	MVDQKVGNEI	0.9999	0.9453	0.043	251.25	0.3164	1.22	1/982	1/7748
SNV	Breast	THOC2_D72V_5	HLA-B35:01	NVLSVISEF	0.9821	0.9061	0.1339	49.66	0.244	25.17	1/982	1/7748
SNV	Breast	AGAP2_G413S_4	HLA-A03:01	GVLSDARSGK	0.9944	0.5053	0.2	97.53	0.2789	3.23	1/982	1/7748
SNV	Breast	C4orf47_K299R_2	HLA-C07:01	SRNYKTSSV	0.9529	0.6575	0.393	204.77	0.1167	10.17	1/982	1/7748
SNV	Breast	KIFAP3_D127N_4	HLA-B18:01	MEINEVANI	0.9314	0.899	0.306	327.46	0.2321	62.78	1/982	1/7748
SNV	Breast	KIFAP3_D127N_1	HLA-B18:01	NEVANINDM	0.9371	0.9231	0.172	63.77	0.1294	62.78	1/982	1/7748
SNV	Breast	RTTN_L1368F_10	HLA-B18:01	EEHIPTQQGF	0.9437	0.7235	0.1502	89.44	0.1458	5.57	1/982	1/7748
SNV	Breast	DHX40_T324I_3	HLA-C12:03	MTIDQQRRI	0.8612	0.9885	0.4894	100.33	0.5231	45.88	1/982	1/7748
SNV	Breast	MUC16_S6253L_9	HLA-C12:03	TSSLVSVTL	0.992	0.9854	0.2956	147.09	0.63	13.84	1/982	1/7748
SNV	Breast	MUC16_S6253L_3	HLA-C12:03	VTLVPTPTL	0.9551	0.9874	0.2148	32.64	0.2933	13.84	1/982	1/7748
SNV	Breast	RAB21_L52P_5	HLA-C12:03	HITTPQASF	0.5202	0.9744	0.5471	318.04	0.8982	20.47	1/982	1/7748
SNV	Breast	RAB21_L52P_4	HLA-C12:03	ITTPQASFL	0.9091	0.9606	0.278	233.58	0.7919	20.47	1/982	1/7748
SNV	Breast	SF3B1_N626D_4	HLA-C12:03	YVRDTTARAF	0.9963	0.9582	0.4515	63.81	0.4144	195.76	1/982	1/7748
SNV	Breast	BAIAP3_S506Y_7	HLA-A02:01	SLADSLYAF	0.8977	0.6183	0.3101	90.58	0.3788	21.64	1/982	1/7748
SNV	Breast	BAIAP3_S506Y_3	HLA-A02:01	SLYAFSEFGL	0.9865	0.6832	0.1526	430.18	0.6423	21.64	1/982	1/7748
SNV	Breast	BAIAP3_S506Y_7	HLA-C02:02	SLADSLYAF	0.5561	0.9631	0.1898	67.53	0.1286	21.64	1/982	1/7748
SNV	Breast	C19orf48_E87Q_5	HLA-B27:02	IRHRQTWAW	0.997	0.5387	0.1311	3.03	0.1212	27.65	1/982	1/7748
SNV	Breast	COG7_R568Q_6	HLA-A02:01	LLAAPQAAL	0.968	0.6694	0.4121	72.45	0.3501	61.75	1/982	1/7748
SNV	Breast	COG7_R568Q_3	HLA-B07:02	APQAALTRL	0.998	0.6651	0.0214	1.61	0.0239	61.75	1/982	1/7748
SNV	Breast	DOCK11_D2062N_1	HLA-B27:02	NRGYGSPRY	0.9915	0.5683	0.4475	146.79	0.4364	14.21	1/982	1/7748
SNV	Breast	EFR3A_E812Q_8	HLA-C02:02	YQSVPVYQM	0.7475	0.986	0.559	83.82	0.1428	118.22	1/982	1/7748
SNV	Breast	ENTPD4_E282K_2	HLA-C07:02	YKVPKTVSF	0.9404	0.9005	0.0226	16.05	0.0685	43.64	1/982	1/7748
SNV	Breast	ENTPD4_E282K_3	HLA-C07:02	AYKVPKTVSF	0.9765	0.913	0.5694	417.11	0.3707	43.64	1/982	1/7748
SNV	Breast	ENTPD4_E282K_4	HLA-C02:02	IAYKVPKTV	0.696	0.9755	0.1083	156.62	0.2264	43.64	1/982	1/7748
SNV	Breast	ESF1_S243L_6	HLA-A02:01	ALEEDLESV	0.9925	0.6761	0.4918	2.06	0.0464	24.82	1/982	1/7748
SNV	Breast	MYCBP2_L3477F_3	HLA-A02:01	SLFRHPSPEL	0.9338	0.7612	0.783	103.25	0.3956	23.06	1/982	1/7748
SNV	Breast	MYCBP2_L3477F_1	HLA-C07:02	FRHPSPEL	0.9943	0.9575	0.0791	208.13	0.2746	23.06	1/982	1/7748
SNV	Breast	PRTFDC1_D59Y_9	HLA-C07:02	DRIERLAKY	0.7768	0.7624	0.5784	463.93	0.3864	4.02	1/982	1/7748
SNV	Breast	PRTFDC1_D59Y_2	HLA-C07:02	KYIMKDIGY	0.622	0.7728	1.4279	316.13	0.3298	4.02	1/982	1/7748
SNV	Breast	TFAP2C_T300P_4	HLA-C07:02	AHVPLLTSL	0.7805	0.9136	0.0862	181.37	0.2584	45.35	1/982	1/7748
SNV	Breast	FAM63A_E455K_9	HLA-A11:01	ATSGRPAGK	0.9989	0.5397	0.1164	8.18	0.0849	94.5	1/982	1/7748
SNV	Breast	GALC_R79G_2	HLA-C12:03	YGSQILDYL	0.6787	0.9664	0.909	313.85	0.8937	15.32	1/982	1/7748
SNV	Breast	MELK_Q115R_2	HLA-B27:05	RRIVSAVAY	0.9997	0.7232	0.0585	1.36	0.0267	6.33	1/982	1/7748
SNV	Breast	MELK_Q115R_3	HLA-B27:05	FRRIVSAVAY	0.999	0.8881	0.4429	332.5	0.5481	6.33	1/982	1/7748
SNV	Breast	MELK_Q115R_2	HLA-B27:05	RRIVSAVAYV	0.9998	0.6861	0.1914	148.03	0.4511	6.33	1/982	1/7748
SNV	Breast	MELK_Q115R_1	HLA-C12:03	RIVSAVAYV	0.7674	0.9642	1.4492	203.92	0.7403	6.33	1/982	1/7748
SNV	Breast	NMI_D4H_8	HLA-B39:01	HKDDTQQIL	0.9947	0.6525	0.3929	8.76	0.0473	13.11	1/982	1/7748
SNV	Breast	THG1L_R64P_6	HLA-B27:05	GRNFHPFAEK	0.9998	0.8701	0.1914	32.54	0.2898	24.1	1/982	1/7748
SNV	Breast	THG1L_R64P_10	HLA-B27:05	VRLDGRNFHPF	1	0.6157	0.6049	441.76	0.5852	24.1	1/982	1/7748
SNV	Breast	AP1G2_S783L_10	HLA-B44:02	FEVNNLPVELW	0.9989	0.5215	0.1088	409.35	0.383	20.57	1/982	1/7748
SNV	Breast	BRWD3_K550R_2	HLA-B27:05	ERIPDQMFF	0.996	0.5443	0.2616	2.9	0.0912	6.42	1/982	1/7748
SNV	Breast	CD4_E355D_3	HLA-B27:05	KRDKAVWVL	0.9967	0.8315	0.3115	3.22	0.103	29.49	1/982	1/7748
SNV	Breast	MED23_V572D_5	HLA-B27:05	SRLLDYMEI	0.9999	0.853	0.4199	6.9	0.165	20.95	1/982	1/7748
SNV	Breast	NAALADL1_E231K_1	HLA-C05:01	KTFPNSWYL	0.8191	0.9192	0.6676	28.82	0.1401	1.5	1/982	2/7748
SNV	Breast	SEC23B_C352F_1	HLA-C05:01	FALDQTGLL	0.9954	0.9933	0.2238	67.54	0.1906	45.38	1/982	1/7748
SNV	Breast	AHCTF1_L2152F_1	HLA-C12:03	FVSDLSSQF	0.9985	0.9442	0.0191	4.9	0.0584	59.76	1/982	1/7748
SNV	Breast	CUBN_H1330N_9	HLA-A02:01	FLAFDLEHNI	0.9932	0.56	0.4074	4.66	0.099	2.06	1/982	1/7748
SNV	Breast	CUBN_H1330N_8	HLA-C12:03	LAFDLEHNI	0.8777	0.9858	0.1564	59.87	0.3996	2.06	1/982	1/7748
SNV	Breast	GSK3A_D253G_3	HLA-C12:03	LVGPDTAVL	0.9951	0.9715	0.6062	169.38	0.6747	13.96	1/982	1/7748
SNV	Breast	JAK1_C189Y_3	HLA-B39:01	NEYLGMAVL	0.7243	0.879	0.413	58.97	0.1354	43.4	1/982	1/7748
SNV	Breast	NRP1_A863V_5	HLA-C12:03	ITIIVMSAL	0.9856	0.9882	0.4559	63.72	0.4141	8.15	1/982	1/7748
SNV	Breast	NRP1_A863V_2	HLA-C12:03	IVMSALGVL	0.9912	0.9924	0.7113	30.44	0.2796	8.15	1/982	1/7748
SNV	Breast	PCDHB12_R461H_2	HLA-B39:01	VHENNSPAL	0.9969	0.9526	0.0915	22.9	0.0852	1.87	1/982	1/7748
SNV	Breast	PCDHB12_R461H_3	HLA-C12:03	FVHENNSPAL	0.9989	0.9787	0.5471	481.68	1.0596	1.87	1/982	1/7748
SNV	Breast	PHLPP1_F748V_1	HLA-A02:01	VLQSLPAEL	0.9826	0.6914	0.5972	15.26	0.1942	6.72	1/982	1/7748
SNV	Breast	PHLPP1_F748V_7	HLA-A02:01	FLLDGNVLQS	0.9919	0.5356	0.6957	196.28	0.5039	6.72	1/982	1/7748
SNV	Breast	PHLPP1_F748V_6	HLA-A02:01	LLDGNVLQSL	0.9836	0.6276	0.5579	250.27	0.5433	6.72	1/982	1/7748
SNV	Breast	PHLPP1_F748V_7	HLA-A02:01	FLLDGNVLQSL	0.9996	0.5456	0.4738	1.73	0.0365	6.72	1/982	1/7748
SNV	Breast	SIGLEC1_P439T_5	HLA-C12:03	VVSETLATL	0.9969	0.9816	0.08	6.94	0.0884	15.12	1/982	1/7748
SNV	Breast	TMEM131_N697S_7	HLA-C12:03	QSLNIMSSF	0.8903	0.9578	0.575	59.96	0.3999	20.41	1/982	1/7748
SNV	Breast	TMEM131_N697S_1	HLA-C12:03	SSFSQKVKI	0.8612	0.9003	0.2269	126.59	0.5852	20.41	1/982	1/7748
SNV	Breast	TPRKB_L106V_8	HLA-C12:03	SANDTSIVI	0.9307	0.9495	0.2004	8.34	0.1045	15.31	1/982	1/7748
SNV	Breast	WWC1_C50S_4	HLA-B39:01	FADSISDEL	0.7193	0.8611	0.4724	231.76	0.2385	11.06	1/982	1/7748
SNV	Breast	WWC1_C50S_4	HLA-C12:03	FADSISDEL	0.8187	0.981	0.3591	211.01	0.7532	11.06	1/982	1/7748
SNV	Breast	NEK3_Q137H_3	HLA-C12:03	LTHNGKVKL	0.9055	0.976	0.1674	82.41	0.4742	5.72	1/982	1/7748
SNV	Breast	PIK3CA_E542K_8	HLA-C12:03	STRDPLSKI	0.8371	0.8875	0.252	111.94	0.5523	12.55	4/982	13/7748
SNV	Breast	PPL_E1632K_1	HLA-C05:01	KIDELQKRL	1	0.9707	0.04	6.3	0.0678	25.87	1/982	1/7748
SNV	Breast	PTK2_R597L_9	HLA-C05:01	MAPESINFL	0.9581	0.9546	0.0841	263.53	0.3224	35.38	1/982	1/7748
SNV	Breast	PTK2_R597L_9	HLA-C12:03	MAPESINFL	0.9825	0.9894	0.1472	16.36	0.1848	35.38	1/982	1/7748
SNV	Breast	TMC7_G687E_4	HLA-A02:01	ALAEAHKRV	0.9833	0.6526	0.7451	50.86	0.3046	3.44	1/982	1/7748
SNV	Breast	ANK3_H471Y_9	HLA-B35:01	NVRGETALY	0.9262	0.8817	0.5701	69.68	0.2739	2.24	1/982	1/7748
SNV	Breast	CNDP2_P76L_8	HLA-B35:01	LPDGSEILL	0.9781	0.9265	0.3252	15.73	0.1615	16.58	1/982	1/7748
SNV	Breast	KAT6B_Q863E_3	HLA-B35:01	MPEHQRQGF	0.9957	0.9279	0.132	8.68	0.1191	10.12	1/982	1/7748
SNV	Breast	LCK_F354L_3	HLA-B35:01	MALIEERNY	0.9938	0.8992	0.336	36.94	0.2203	3.78	1/982	1/7748
SNV	Breast	LCK_F354L_3	HLA-B58:01	MALIEERNY	0.9612	0.8501	0.6765	257.15	0.5332	3.78	1/982	1/7748
SNV	Breast	LOXL3_R598H_6	HLA-B58:01	RPKAGHHSW	0.6133	0.9414	0.4626	470.39	0.6483	2.07	1/982	1/7748
SNV	Breast	LOXL3_R598H_4	HLA-B58:01	KAGHHSWVW	0.9986	0.9963	0.0034	1.96	0.0282	2.07	1/982	1/7748
SNV	Breast	TBCD_A207S_6	HLA-C02:02	KARDASAVL	0.9602	0.9815	0.17	471.08	0.4541	15.64	1/982	1/7748
SNV	Breast	TBCD_A207S_2	HLA-C02:02	ASAVLVSRF	0.5798	0.9826	0.5849	337.11	0.3682	15.64	1/982	1/7748
SNV	Breast	TLR3_V610L_7	HLA-C02:02	SVFNNQLSL	0.8381	0.9914	0.066	24.59	0.0562	3.85	1/982	1/7748
SNV	Breast	PCNT_D1160Y_7	HLA-B39:06	ERGALQYAL	0.9979	0.8553	0.2609	13.12	0.0721	5.9	1/982	1/7748
SNV	Breast	PCNT_D1160Y_1	HLA-C12:03	YALRRLLGL	0.9902	0.989	0.0889	12.93	0.1527	5.9	1/982	1/7748
SNV	Breast	PIK3CA_E542K_8	HLA-C12:03	STRDPLSKI	0.8371	0.8875	0.252	111.94	0.5523	12.95	4/982	13/7748
SNV	Breast	DMD_Q1785K_1	HLA-C07:02	KFNSDIQKL	0.7307	0.8435	0.4018	433.61	0.3764	1.09	1/982	1/7748
SNV	Breast	MRPS27_M10I_1	HLA-B08:01	LLARQVVL	0.9992	0.7711	1.3527	410.16	0.3071	37.48	1/982	1/7748
SNV	Breast	MRPS27_M10I_2	HLA-B08:01	ILLARQVVL	0.9976	0.9411	0.025	29.66	0.0819	37.48	1/982	1/7748
SNV	Breast	PIK3CA_P104L_9	HLA-B08:01	QPFLKVIEL	0.997	0.812	0.0314	11.37	0.0435	12.27	1/982	1/7748
SNV	Breast	PTPRD_S569P_2	HLA-B08:01	TPYRLQGL	0.9943	0.6034	1.5371	57.77	0.1272	2.77	1/982	1/7748
SNV	Breast	QSOX1_C110S_1	HLA-C07:02	SRDFNIPGF	0.8514	0.945	0.0969	14.73	0.0647	68.8	1/982	1/7748
SNV	Breast	QSOX1_C110S_1	HLA-C07:01	SRDFNIPGF	0.9884	0.6868	0.1053	57.89	0.0704	68.8	1/982	1/7748
SNV	Breast	SECISBP2_N31S_6	HLA-A24:02	RFAGLSVAW	0.9862	0.69	0.1956	6.43	0.1718	50.69	1/982	1/7748
SNV	Breast	TUBGCP3_E884K_7	HLA-C07:02	FRLDFNKHY	0.8691	0.8588	0.0018	12.3	0.0572	17.13	1/982	1/7748
SNV	Breast	TUBGCP3_E884K_7	HLA-C07:01	FRLDFNKHY	0.9947	0.5391	0.0067	19.01	0.0366	17.13	1/982	1/7748
SNV	Breast	ADAMTS3_F87Y_9	HLA-C12:03	QLFFNITAY	0.562	0.9774	0.9886	126.29	0.5846	1.63	1/982	1/7748
SNV	Breast	ADAMTS3_F87Y_3	HLA-C12:03	TAYGKDFHL	0.9961	0.9823	0.0922	12.33	0.1467	1.63	1/982	1/7748
SNV	Breast	ADAMTS3_F87Y_1	HLA-C12:03	YGKDFHLRL	0.8582	0.9796	0.6062	23.31	0.2326	1.63	1/982	1/7748
SNV	Breast	AHSA1_M148V_7	HLA-A02:01	KLLREAVGI	0.9835	0.5042	0.5004	21.73	0.2244	26.81	1/982	1/7748
SNV	Breast	ATP6V1A_R571C_1	HLA-B44:03	CEHMGDILY	0.997	0.7488	0.0529	172.35	0.3253	24.41	1/982	1/7748
SNV	Breast	BCAR1_I688V_1	HLA-C12:03	VTRQGKSQL	0.823	0.9343	0.5343	281.8	0.8569	2.32	1/982	1/7748
SNV	Breast	C16orf45_E144A_5	HLA-B44:03	REQEADKEM	0.9856	0.9655	0.3189	176.87	0.3273	12.53	1/982	1/7748
SNV	Breast	C16orf45_E144A_3	HLA-B44:03	QEADKEMADF	0.9944	0.9791	0.0935	31.09	0.1846	12.53	1/982	1/7748
SNV	Breast	CDK5RAP2_P1191A_1	HLA-B44:03	AEMIDSRVL	0.9937	0.945	0.2241	2.54	0.0508	7.94	1/982	1/7748
SNV	Breast	CDK5RAP2_P1191A_7	HLA-C12:03	ILGPLAAEM	0.9965	0.9803	0.4515	454.93	1.0361	7.94	1/982	1/7748
SNV	Breast	DNM2_E291D_5	HLA-B38:01	NHIRDSLPAL	0.9985	0.8309	0.1129	216.89	0.1136	6.46	1/982	1/7748
SNV	Breast	DNM2_E291D_7	HLA-C12:03	LTNHIRDSL	0.9833	0.9491	0.7544	234.34	0.7931	6.46	1/982	1/7748
SNV	Breast	DNM2_E291D_4	HLA-C12:03	HIRDSLPAL	0.9959	0.9629	0.2878	8.86	0.1107	6.46	1/982	1/7748
SNV	Breast	FAM117A_S306F_3	HLA-C12:03	ASFPGHPAF	0.9765	0.991	0.0175	2	0.0098	5.96	1/982	1/7748
SNV	Breast	FAM117A_S306F_4	HLA-C12:03	KASFPGHPAF	0.9971	0.9873	0.6284	57.4	0.3923	5.96	1/982	1/7748
SNV	Breast	FAM117A_S306F_3	HLA-C12:03	ASFPGHPAFL	0.9993	0.9856	0.1646	234.99	0.7941	5.96	1/982	1/7748
SNV	Breast	GBP4_L166V_8	HLA-C12:03	YVTELAEVI	0.9715	0.9817	0.5936	145.04	0.6256	14.32	1/982	1/7748
SNV	Breast	GNPAT_L611F_1	HLA-A02:01	FLDQGTSQC	0.9619	0.7095	0.8398	119.7	0.4195	34.93	1/982	1/7748
SNV	Breast	GNPAT_L611F_9	HLA-C12:03	AVRKFTSQF	0.787	0.9907	0.575	42.11	0.3384	34.93	1/982	1/7748
SNV	Breast	GPR17_P14T_6	HLA-C12:03	GSRKPTREM	0.8172	0.9727	0.58	390.67	0.9756	1.19	1/982	1/7748
SNV	Breast	HPD_P339L_9	HLA-A02:01	YLLQIFTKL	0.9875	0.5702	0.0109	2.23	0.0507	1.12	1/982	1/7748
SNV	Breast	HPD_P339L_2	HLA-A02:01	KLVQDRPTL	0.8754	0.5662	0.5313	110.23	0.4054	1.12	1/982	1/7748
SNV	Breast	HPD_P339L_9	HLA-C12:03	YLLQIFTKL	0.8213	0.9916	0.6452	261.37	0.8311	1.12	1/982	1/7748
SNV	Breast	HPD_P339L_1	HLA-C12:03	LVQDRPTLF	0.9171	0.9825	0.159	19.4	0.2051	1.12	1/982	1/7748
SNV	Breast	IRAK4_S368Y_7	HLA-B44:03	GEITPKYDI	0.9425	0.8105	0.4505	80.38	0.2672	5.75	1/982	1/7748
SNV	Breast	IRAK4_S368Y_7	HLA-B44:03	GEITPKYDIY	0.9979	0.779	0.0851	3.78	0.0744	5.75	1/982	1/7748
SNV	Breast	IRAK4_S368Y_2	HLA-C04:01	KYDIYSFGV	0.9702	0.5765	0.3701	96.08	0.0731	5.75	1/982	1/7748
SNV	Breast	ISYNA1_P497L_3	HLA-A02:01	GLLPQNHML	0.9708	0.7144	0.3297	1.76	0.0377	2.56	1/982	1/7748
SNV	Breast	ISYNA1_P497L_3	HLA-A02:01	GLLPQNHMLL	0.9812	0.5039	0.7411	25.53	0.2381	2.56	1/982	1/7748
SNV	Breast	KIF16B_S1100G_6	HLA-C12:03	KVASSGLPV	0.8415	0.9896	1.3478	395.81	0.9805	9.12	1/982	1/7748
SNV	Breast	KMT2B_V1609I_6	HLA-B44:03	NEWTHINCAIW	0.9993	0.8864	0.0851	413.45	0.394	3.87	1/982	1/7748
SNV	Breast	LPIN2_V300L_2	HLA-A02:01	RLIPSEDNL	0.9272	0.7451	0.7874	111.87	0.4079	12.1	1/982	1/7748
SNV	Breast	LPIN2_V300L_8	HLA-B44:03	SENTHFRLI	0.9948	0.9607	0.2143	16.01	0.147	12.1	1/982	1/7748
SNV	Breast	NCKAP1_M467I_5	HLA-C12:03	FVNTITSL	0.9998	0.9875	0.9886	175.24	0.6855	19.35	1/982	1/7748
SNV	Breast	NCKAP1_M467I_9	HLA-C12:03	IMSSFVNTI	0.9926	0.9802	0.4673	302.46	0.8811	19.35	1/982	1/7748
SNV	Breast	NDUFA6_R86W_9	HLA-B44:03	LDITVKMGW	0.9851	0.9924	0.3661	382.01	0.3878	41.11	1/982	1/7748
SNV	Breast	NDUFA6_R86W_2	HLA-C04:01	GWDKVREMF	0.9015	0.9353	0.0744	33.25	0.0471	41.11	1/982	1/7748
SNV	Breast	NDUFA6_R86W_3	HLA-C12:03	MGWDKVREM	0.9955	0.9841	0.159	7.96	0.0998	41.11	1/982	1/7748
SNV	Breast	NSL1_E183Q_4	HLA-C12:03	VAKQISEAM	0.989	0.9776	0.0761	16.43	0.1853	9.08	1/982	1/7748
SNV	Breast	NSL1_E183Q_1	HLA-C12:03	QISEAMKSL	0.9953	0.9664	0.934	385.18	0.9703	9.08	1/982	1/7748
SNV	Breast	PARP9_H457P_5	HLA-C12:03	FAKDPVKHQL	0.999	0.9874	0.2269	247.31	0.8122	9.86	1/982	1/7748
SNV	Breast	PDE10A_I621T_1	HLA-C12:03	TATDLALYF	0.8347	0.9385	0.1878	34.46	0.3035	2.38	1/982	1/7748
SNV	Breast	POLQ_Q2250K_7	HLA-C12:03	FTEPNIKNV	0.5122	0.9867	0.6452	392.33	0.9772	2.09	1/982	1/7748
SNV	Breast	PRKCB_K276M_7	HLA-A02:01	SVDGWFMLL	0.9091	0.5191	0.2808	166.46	0.4759	1.43	1/982	1/7748
SNV	Breast	PRKCB_K276M_7	HLA-C04:01	SVDGWFMLL	0.9995	0.9503	0.0778	211.84	0.1038	1.43	1/982	1/7748
SNV	Breast	PRKCB_K276M_8	HLA-C12:03	ASVDGWFML	0.9728	0.9829	0.5869	334.34	0.9169	1.43	1/982	1/7748
SNV	Breast	RAI2_T150N_4	HLA-C12:03	SSSNIHNNL	0.972	0.9785	0.6656	98.05	0.5169	29.97	1/982	1/7748
SNV	Breast	ROBO1_A85E_7	HLA-C12:03	VSKGEPETL	0.9956	0.9817	0.2434	335.7	0.9184	12.15	1/982	1/7748
SNV	Breast	SAMD9_C1332W_9	HLA-B44:03	SEPLQVERW	0.9997	0.962	0.07	2.37	0.047	5.45	1/982	1/7748
SNV	Breast	SOBP_C220W_8	HLA-A02:01	RLAFKNNWEL	0.9591	0.6338	1.413	362.87	0.6047	5.61	1/982	1/7748
SNV	Breast	SOBP_C220W_7	HLA-C12:03	LAFKNNWEL	0.9955	0.9914	0.0115	19.76	0.2079	5.61	1/982	1/7748
SNV	Breast	SPTSSA_A48T_8	HLA-C12:03	LVSIVGMTL	0.9816	0.9689	0.3446	37.98	0.3204	18.23	1/982	1/7748
SNV	Breast	SPTSSA_A48T_7	HLA-C12:03	VSIVGMTLY	0.5515	0.9606	0.4241	94.24	0.5063	18.23	1/982	1/7748
SNV	Breast	SRF_P438L_9	HLA-C12:03	VLNAFSQAL	0.9963	0.9625	0.7194	99.94	0.522	14.96	1/982	1/7748
SNV	Breast	TLR3_I422T_1	HLA-B44:03	TESDAFSW	0.9997	0.9878	0.1903	13.51	0.1386	8.9	1/982	1/7748
SNV	Breast	TLR3_I422T_1	HLA-B44:03	TESDAFSWL	0.9279	0.9773	0.2265	168.16	0.3234	8.9	1/982	1/7748
SNV	Breast	TMEM64_N337Y_1	HLA-C12:03	YAAIVACEM	0.9596	0.9862	0.0425	60.79	0.4031	9.7	1/982	1/7748
SNV	Breast	USP9X_T1160S_7	HLA-C12:03	IAKLLLSAI	0.9533	0.9104	0.3124	437.94	1.0204	32.3	1/982	1/7748
SNV	Breast	XPNPEP3_V11L_9	HLA-A02:01	WLLSAPKLL	0.9497	0.6564	0.6341	197.48	0.5049	4.12	1/982	1/7748
SNV	Breast	XPNPEP3_V11L_3	HLA-A02:01	KLLPAVANV	0.9981	0.9248	0.053	1.23	0.0125	4.12	1/982	1/7748
SNV	Breast	XPNPEP3_V11L_6	HLA-C12:03	SAPKLLPAV	0.9898	0.9915	0.159	147.44	0.6308	4.12	1/982	1/7748
SNV	Breast	ZNF354A_R48T_7	HLA-C12:03	VMLENYTNL	0.994	0.9768	0.9511	260.49	0.83	6.37	1/982	1/7748
SNV	Breast	ZNF354A_R48T_2	HLA-C12:03	YTNLVSLGL	0.8471	0.979	0.3984	35.2	0.3072	6.37	1/982	1/7748
SNV	Breast	ZNF417_V509L_9	HLA-A02:01	FLSSSALHL	0.9959	0.6104	0.0126	3.32	0.0721	2.88	1/982	1/7748
SNV	Breast	ZNF417_V509L_9	HLA-C12:03	FLSSSALHL	0.9928	0.9769	0.1621	354.06	0.9385	2.88	1/982	1/7748
SNV	Breast	ARRDC3_I277V_9	HLA-A02:01	KIPPVSPSV	0.9937	0.5706	0.217	14.32	0.1886	26.24	1/982	1/7748
SNV	Breast	MAT2A_L315V_4	HLA-C07:02	RRVVVQVSY	0.8715	0.9524	0.1285	127.83	0.22	84	1/982	1/7748
SNV	Breast	OSGEPL1_I155V_1	HLA-C07:02	VRLTNKVEF	0.964	0.9493	0.1136	27.25	0.0927	8.37	1/982	1/7748
SNV	Breast	RHBDD2_A241V_3	HLA-C07:02	RRVAQSRKL	0.8957	0.9664	0.1925	141.67	0.2311	319.84	1/982	1/7748
SNV	Breast	CHSY1_E607Q_2	HLA-C07:02	GQFSRALAL	0.979	0.9477	0.0379	420.96	0.372	9.53	1/982	1/7748
SNV	Breast	NEDD9_T577M_7	HLA-A25:01	ESIMNSMEY	0.994	0.8085	0.0864	123.19	0.0305	7.17	1/982	1/7748
SNV	Breast	PRRC2C_T1823I_9	HLA-C02:02	VSASVPASI	0.7085	0.984	0.2597	294.4	0.3388	17.09	1/982	1/7748
SNV	Breast	SLC10A1_S178Y_3	HLA-C07:02	LKYKRPQYM	0.8297	0.8969	0.418	164.73	0.2474	3.24	1/982	1/7748
SNV	Breast	SLC1A6_R242W_7	HLA-C02:02	FLENVTWAL	0.6935	0.9924	1.1406	311.19	0.3508	6.59	1/982	1/7748
SNV	Breast	SMC1B_Y511F_4	HLA-C07:02	KRLFPDSVF	0.9295	0.9758	0.2126	137.04	0.2275	1.88	1/982	1/7748
SNV	Breast	TMEM115_P349L_7	HLA-C07:02	TFEAAPLTL	0.9155	0.9843	0.172	294.71	0.3194	23.55	3/982	3/7748
SNV	Breast	TMEM115_P349L_7	HLA-C07:02	TFEAAPLTL	0.9155	0.9843	0.172	294.71	0.3194	23.55	3/982	3/7748
SNV	Breast	TMEM115_P349L_7	HLA-C07:02	TFEAAPLTL	0.9155	0.9843	0.172	294.71	0.3194	23.55	3/982	3/7748
SNV	Breast	VCPIP1_A1188V_7	HLA-A03:01	ALGAAFVTR	0.9574	0.6821	0.3796	80.19	0.2612	5.79	1/982	1/7748
SNV	Breast	VPS53_G193R_2	HLA-C07:02	MRIPQIRQL	0.9037	0.9737	0.0036	2.28	0.0069	3.01	1/982	1/7748
SNV	Breast	ACSF3_R318C_7	HLA-C12:03	HAQDFLCAV	0.9466	0.9948	0.0461	193.83	0.721	1.7	1/982	1/7748
SNV	Breast	GLMP_R228W_3	HLA-B35:03	SPWGNRSLF	0.956	0.9375	0.1145	110.41	0.1067	21.53	1/982	1/7748
SNV	Breast	PIK3CA_H1047L_9	HLA-C12:03	FMKQMNDAL	0.9933	0.9908	0.4559	372.81	0.958	8.82	2/982	2/7748
SNV	Breast	DNAJC3_H113D_6	HLA-A02:01	RLQRGDLLL	0.9493	0.5492	0.9377	399.94	0.6262	137.3	1/982	1/7748
SNV	Breast	DUSP19_I8T_9	HLA-B15:01	SLNQETKAF	0.9987	0.9523	0.1419	5.57	0.0553	2.68	1/982	1/7748
SNV	Breast	EPHX3_S208P_2	HLA-B35:01	YPLHHISQF	0.9993	0.8191	0.0016	1.13	0.0082	1.73	1/982	1/7748
SNV	Breast	EPHX3_S208P_2	HLA-B35:01	YPLHHISQFF	0.9984	0.8185	0.0824	56.26	0.2545	1.73	1/982	1/7748
SNV	Breast	EPHX3_S208P_5	HLA-C04:01	YQDYPLHHI	0.9997	0.8453	0.0833	133.74	0.0814	1.73	1/982	1/7748
SNV	Breast	ESYT3_I606M_9	HLA-B15:01	ALKKGPLLM	0.9885	0.8874	0.3115	92.51	0.2793	1.23	1/982	1/7748
SNV	Breast	LAIR2_A96T_7	HLA-B15:01	SVSEGNTGLY	0.9989	0.8246	0.6045	296.65	0.4297	1.26	1/982	1/7748
SNV	Breast	LAIR2_A96T_7	HLA-C03:04	SVSEGNTGL	0.9887	0.9913	0.2055	74.87	0.2443	1.26	1/982	1/7748
SNV	Breast	NAA25_E70K_5	HLA-A02:01	TLAQKVAAL	0.9814	0.6912	0.5156	19.57	0.2155	23.43	1/982	1/7748
SNV	Breast	NAA25_E70K_5	HLA-C03:04	TLAQKVAAL	0.9955	0.9824	0.852	307.46	0.4239	23.43	1/982	1/7748
SNV	Breast	TTC7A_R138Q_2	HLA-A02:01	YQDAISMYA	0.9825	0.5396	0.5235	300.33	0.5728	14.23	1/982	1/7748
SNV	Breast	TTC7A_R138Q_2	HLA-B15:01	YQDAISMY	0.9981	0.9598	1.6191	199.16	0.3708	14.23	1/982	1/7748
SNV	Breast	TTC7A_R138Q_4	HLA-B15:01	GSYQDAISMY	0.9988	0.8587	0.6426	150.17	0.3339	14.23	1/982	1/7748
SNV	Breast	TTC7A_R138Q_4	HLA-C03:04	GSYQDAISM	0.9983	0.9651	0.5222	80.47	0.2519	14.23	1/982	1/7748
SNV	Breast	UBE4A_I751S_6	HLA-B35:01	RPMYPSLRY	0.9963	0.8706	0.2156	2.29	0.0441	50.99	1/982	1/7748
SNV	Breast	WDR60_N978S_7	HLA-B15:01	VQDDTSSIY	0.9734	0.8006	0.3211	16.2	0.1257	24.97	1/982	1/7748
SNV	Breast	WDR60_N978S_8	HLA-B15:01	LVQDDTSSIY	0.9993	0.7993	0.4875	199.42	0.371	24.97	1/982	1/7748
SNV	Breast	WDR60_N978S_8	HLA-C03:04	LVQDDTSSI	0.9913	0.9861	0.4831	373.09	0.4552	24.97	1/982	1/7748
SNV	Breast	ZBED6CL_A159S_9	HLA-B15:01	LQSSSHSGSF	0.9994	0.9136	0.1041	107.44	0.2931	9.64	1/982	1/7748
SNV	Breast	ZBED6CL_A159S_6	HLA-C03:04	SSHSGSFLL	0.9991	0.992	0.0545	315.28	0.428	9.64	1/982	1/7748
SNV	Breast	ANXA6_R281H_6	HLA-C03:04	RIMVSHSEL	0.9813	0.9734	1.5161	168.16	0.3376	355.54	1/982	1/7748
SNV	Breast	CHTF18_R734S_7	HLA-C07:01	NRMSQMSNL	0.9981	0.5321	0.0907	41.3	0.0586	12.03	1/982	1/7748
SNV	Breast	IREB2_L743V_9	HLA-C03:04	QAIENAHVV	0.9909	0.9918	0.1511	29.83	0.1655	42.34	1/982	1/7748
SNV	Breast	MMGT1_S29F_7	HLA-C03:04	SAAQHRFYM	0.9986	0.9685	0.2055	24.8	0.1544	45.25	1/982	1/7748
SNV	Breast	MTOR_L738F_6	HLA-C03:04	MLIQIFTEL	0.9929	0.9908	0.2163	74.4	0.2437	20.86	1/982	1/7748
SNV	Breast	NME7_D101N_7	HLA-B08:01	LALIKPNAI	0.9959	0.7754	0.0616	42.19	0.1053	8.24	1/982	1/7748
SNV	Breast	NME7_D101N_7	HLA-C03:04	LALIKPNAI	0.9816	0.9911	0.3596	55.06	0.2119	8.24	1/982	1/7748
SNV	Breast	SMARCA4_R1192H_2	HLA-B15:10	HHIGQQNEV	0.9922	0.826	0.0257	399.71	0.0323	76.11	1/982	1/7748
SNV	Breast	STRADA_I130V_2	HLA-C03:04	NVVPYRATF	0.9561	0.9619	0.5621	254.23	0.3942	9.21	1/982	1/7748
SNV	Breast	GLI1_R515W_7	HLA-B27:05	LRPIGTWGL	0.9932	0.928	0.6617	291.62	0.531	1.39	1/982	1/7748
SNV	Breast	GLI1_R515W_7	HLA-B27:02	LRPIGTWGL	0.9938	0.7532	0.5437	109.38	0.4035	1.39	1/982	1/7748
SNV	Breast	GLI1_R515W_7	HLA-C07:02	LRPIGTWGL	0.7938	0.956	0.3064	110.63	0.2045	1.39	1/982	1/7748
SNV	Breast	HMOX2_R203W_3	HLA-C07:02	LYWARMNAL	0.5314	0.982	0.3508	40.17	0.1164	48.73	1/982	1/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:05	ARHGGWTTK	0.9983	0.8261	0.1474	11.97	0.2093	22.84	11/982	17/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:05	ARHGGWTTKM	0.9998	0.666	0.0388	24.5	0.2651	22.84	11/982	17/7748
SNV	Breast	PSTPIP2_P167L_9	HLA-B27:05	SRSANLVNL	0.9997	0.9488	0.3341	7.35	0.1695	18.42	1/982	1/7748
SNV	Breast	PSTPIP2_P167L_9	HLA-B27:02	SRSANLVNL	0.9997	0.7677	0.3121	15.32	0.2312	18.42	1/982	1/7748
SNV	Breast	PSTPIP2_P167L_9	HLA-C07:02	SRSANLVNL	0.9012	0.9721	0.1184	29.02	0.0961	18.42	1/982	1/7748
SNV	Breast	R3HDM2_Q976L_9	HLA-C01:02	RILERASSL	0.8042	0.9758	0.4838	487.14	0.0505	30.39	3/982	3/7748
SNV	Breast	R3HDM2_Q976L_9	HLA-C01:02	RILERASSL	0.8042	0.9758	0.4838	487.14	0.0505	30.39	3/982	3/7748
SNV	Breast	R3HDM2_Q976L_9	HLA-C01:02	RILERASSL	0.8042	0.9758	0.4838	487.14	0.0505	30.39	3/982	3/7748
SNV	Breast	C1orf116_S555I_10	HLA-A02:01	KLADLEQEQI	0.9967	0.7715	0.7351	155.36	0.4641	1.19	1/982	1/7748
SNV	Breast	FBLN1_T161M_5	HLA-A02:01	GLQEMDKIIEV	0.9993	0.6771	0.6957	2.39	0.0536	179.42	1/982	1/7748
SNV	Breast	LURAP1L_T158P_8	HLA-A02:01	SLLESQSPSL	0.9859	0.8014	0.5871	20.69	0.2202	45.01	2/982	2/7748
SNV	Breast	EPB41L2_D969E_2	HLA-B13:02	HEQALAQAI	0.9975	0.9501	0.0323	442.01	0.1438	12.21	1/982	1/7748
SNV	Breast	EPB41L2_D969E_2	HLA-B41:02	HEQALAQAI	0.5149	0.7891	0.0101	2.29	0.0536	12.21	1/982	1/7748
SNV	Breast	LAS1L_A69V_3	HLA-A24:02	RYVLNRITVW	0.9922	0.5572	0.3494	17.17	0.2613	44.74	1/982	1/7748
SNV	Breast	NUP210_F1569V_9	HLA-A02:01	HLHPIQTSV	0.9928	0.6532	0.0914	6.34	0.1216	18.04	1/982	1/7748
SNV	Breast	NUP210_F1569V_9	HLA-C17:01	HLHPIQTSV	0.8846	0.9764	0.0769	53.79	0.144	18.04	1/982	1/7748
SNV	Breast	PCDHGA12_R151Q_2	HLA-A24:02	MQFPLPHAW	0.8435	0.8006	0.3434	176.55	0.5321	1.78	1/982	1/7748
SNV	Breast	PCDHGA12_R151Q_2	HLA-B13:02	MQFPLPHAW	0.8042	0.9608	0.2674	63.72	0.0325	1.78	1/982	1/7748
SNV	Breast	SPINK8_I86V_8	HLA-A02:01	ILFEGLNV	0.9893	0.719	1.8723	14.72	0.1911	9.12	1/982	1/7748
SNV	Breast	SPINK8_I86V_9	HLA-A02:01	KILFEGLNV	0.9708	0.6928	1.0905	392.09	0.6218	9.12	1/982	1/7748
SNV	Breast	SPINK8_I86V_8	HLA-A02:01	ILFEGLNVT	0.9827	0.7045	0.49	6.82	0.1272	9.12	1/982	1/7748
SNV	Breast	SPINK8_I86V_8	HLA-A02:01	ILFEGLNVTKL	0.9988	0.624	0.65	8.63	0.1468	9.12	1/982	1/7748
SNV	Breast	CSRNP2_R119Q_6	HLA-B44:03	QEVNHQEIL	0.9659	0.9655	0.1945	52.22	0.2314	29.52	1/982	1/7748
SNV	Breast	CSRNP2_R119Q_8	HLA-B44:03	QEQEVNHQEI	0.991	0.9773	0.2885	348.01	0.3805	29.52	1/982	1/7748
SNV	Breast	WDR11_N92S_4	HLA-B44:03	ADVSGKIIVW	0.9976	0.983	0.1218	320.9	0.3741	15.36	1/982	1/7748
SNV	Breast	ATRN_Y537H_3	HLA-C02:02	YRHDVDTQM	0.8241	0.9347	1.1529	207.94	0.2724	37.13	1/982	1/7748
SNV	Breast	CCDC142_A378G_2	HLA-C12:03	SGLGGQSSL	0.9391	0.9931	1.0865	362.45	0.9473	3.19	1/982	1/7748
SNV	Breast	COL14A1_L713I_9	HLA-C12:03	VVTAVGTTI	0.6806	0.9463	0.786	50.45	0.3698	52.9	1/982	1/7748
SNV	Breast	DCLK2_L477V_9	HLA-B18:01	MELVKGGDVF	0.9578	0.5682	0.2089	286.06	0.2228	10.22	1/982	1/7748
SNV	Breast	ERICH3_Q1261H_4	HLA-B40:02	AEGHGGVDVV	0.9854	0.5131	0.5726	355.59	0.5644	1.16	1/982	1/7748
SNV	Breast	ERMP1_G629V_9	HLA-C12:03	VVLASILAV	0.7136	0.9852	1.0768	53.8	0.381	19.78	1/982	1/7748
SNV	Breast	ERMP1_G629V_6	HLA-C12:03	ASILAVCTM	0.9257	0.9828	0.278	292.18	0.8692	19.78	1/982	1/7748
SNV	Breast	FAM105A_L267V_9	HLA-C12:03	KTKKVIPSV	0.9668	0.9363	0.5413	226.96	0.7809	15.71	1/982	1/7748
SNV	Breast	FAM105A_L267V_6	HLA-C12:03	KVIPSVFRL	0.9597	0.9749	0.7398	5.76	0.069	15.71	1/982	1/7748
SNV	Breast	FAM105A_L267V_6	HLA-C02:02	KVIPSVFRL	0.6204	0.9708	0.2844	9.43	0.0163	15.71	1/982	1/7748
SNV	Breast	FGGY_S484A_1	HLA-C12:03	AVLVGAAVL	0.9408	0.9918	1.0865	308.39	0.8877	3.4	1/982	1/7748
SNV	Breast	GABRB2_I279M_9	HLA-C12:03	SAARVALGM	0.9494	0.9855	0.1451	48.3	0.3623	2.64	1/982	1/7748
SNV	Breast	GABRB2_I279M_6	HLA-C12:03	RVALGMTTV	0.8987	0.9765	1.473	16.79	0.1877	2.64	1/982	1/7748
SNV	Breast	GABRB2_I279M_5	HLA-C12:03	VALGMTTVL	0.9923	0.9696	0.0376	5.68	0.0681	2.64	1/982	1/7748
SNV	Breast	GABRB2_I279M_3	HLA-C12:03	LGMTTVLTM	0.9189	0.9708	0.5604	42.68	0.3407	2.64	1/982	1/7748
SNV	Breast	GABRB2_I279M_9	HLA-C02:02	SAARVALGM	0.9706	0.9849	0.1115	468.08	0.4522	2.64	1/982	1/7748
SNV	Breast	GABRB2_I279M_6	HLA-C02:02	RVALGMTTV	0.9542	0.9547	1.382	97.76	0.1557	2.64	1/982	1/7748
SNV	Breast	IFT20_E25V_1	HLA-C12:03	VVTQQTIEL	0.9146	0.9684	0.3936	72.15	0.4431	19.98	1/982	1/7748
SNV	Breast	NAA35_D599Y_6	HLA-C12:03	VAFDMYGKV	0.9125	0.992	0.1929	68.89	0.4323	15.51	1/982	1/7748
SNV	Breast	PAXBP1_G709A_6	HLA-C12:03	TSRMVAITL	0.9754	0.9812	0.58	57.54	0.3927	7.1	1/982	1/7748
SNV	Breast	PAXBP1_G709A_4	HLA-C12:03	RMVAITLKL	0.9872	0.952	0.8996	107.35	0.5411	7.1	1/982	1/7748
SNV	Breast	PAXBP1_G709A_4	HLA-C02:02	RMVAITLKL	0.6905	0.9366	0.9155	222.87	0.2837	7.1	1/982	1/7748
SNV	Breast	PNMAL1_V375I_9	HLA-C12:03	VSLGPVSYI	0.8602	0.9728	0.2566	121.06	0.5733	13.49	1/982	1/7748
SNV	Breast	POFUT2_G130A_6	HLA-C12:03	FIAESAGPF	0.9413	0.9901	0.252	131.66	0.5957	20.61	1/982	1/7748
SNV	Breast	POFUT2_G130A_2	HLA-C12:03	SAGPFIDQV	0.7224	0.9851	0.2183	429.81	1.0127	20.61	1/982	1/7748
SNV	Breast	PPDPF_P44L_7	HLA-C12:03	EAIPHPLGL	0.8996	0.9825	0.1294	13.87	0.1634	692.46	1/982	1/7748
SNV	Breast	PPDPF_P44L_7	HLA-C02:02	EAIPHPLGL	0.878	0.9733	0.1944	444.36	0.4373	692.46	1/982	1/7748
SNV	Breast	PTPRG_L747F_6	HLA-C12:03	IVVSAFTFV	0.872	0.9736	1.6035	479.74	1.058	17.17	1/982	1/7748
SNV	Breast	TSR2_R56H_3	HLA-C12:03	FMHNADLEL	0.9993	0.9871	0.1294	35.47	0.3085	165.49	1/982	1/7748
SNV	Breast	TSR2_R56H_3	HLA-C02:02	FMHNADLEL	0.8212	0.9812	0.1755	41.57	0.0923	165.49	1/982	1/7748
SNV	Breast	ZBTB12_V101F_9	HLA-B18:01	LEFAVRDIF	0.995	0.7662	0.0201	2.87	0.0161	8.2	1/982	1/7748
SNV	Breast	ZBTB12_V101F_6	HLA-C12:03	AVRDIFNYL	0.9012	0.9787	0.3176	7.31	0.093	8.2	1/982	1/7748
SNV	Breast	ZBTB12_V101F_1	HLA-C12:03	FNYLTAASY	0.5606	0.9913	1.015	122.17	0.5757	8.2	1/982	1/7748
SNV	Breast	ZBTB12_V101F_6	HLA-C02:02	AVRDIFNYL	0.8812	0.9757	0.2904	43.19	0.0946	8.2	1/982	1/7748
SNV	Breast	ZNF662_G119E_4	HLA-A24:02	QWCESQELW	0.9931	0.6295	0.3565	267.83	0.59	3.53	1/982	1/7748
SNV	Breast	ZNF768_Q524H_5	HLA-C12:03	KAFSHSSDL	0.9519	0.9641	0.0182	8.5	0.1064	53.09	1/982	1/7748
SNV	Breast	ZNF780A_H457D_6	HLA-C12:03	MAFRYDCQL	0.987	0.9539	0.0638	293.73	0.871	4.89	1/982	1/7748
SNV	Breast	HEPH_E300K_1	HLA-C04:01	KIDVHTAFF	0.9994	0.5924	0.1579	208.76	0.1031	10.53	1/982	2/7748
SNV	Breast	HJURP_N465S_8	HLA-B35:03	LPDSWAMSM	0.9902	0.9287	0.0158	2.57	0.0097	41.58	1/982	1/7748
SNV	Breast	NCOR1_N2260K_8	HLA-C04:01	SFADPASKL	0.9621	0.8156	0.1076	73.47	0.0656	18.97	1/982	1/7748
SNV	Breast	CASP8_R233W_5	HLA-C15:02	KSKPWGYCL	0.9958	0.9091	0.7083	181.4	0.4997	33.21	1/982	1/7748
SNV	Breast	EYA3_S517R_1	HLA-A31:01	RCFERIVSR	0.9886	0.6811	0.2377	18.81	0.0801	38.69	1/982	1/7748
SNV	Breast	LRRC32_R357Q_6	HLA-C15:02	RTFEAQRL	0.9983	0.8127	0.6191	373.83	0.6905	25.65	1/982	1/7748
SNV	Breast	MAP3K1_Y392C_6	HLA-A31:01	SLFQKCHSR	0.9804	0.5209	0.0231	65.34	0.1685	80.28	1/982	1/7748
SNV	Breast	MDH2_A252S_2	HLA-B51:01	MSYAGARFV	0.9347	0.7891	0.71	259.58	0.3434	189	1/982	1/7748
SNV	Breast	MDH2_A252S_2	HLA-C15:02	MSYAGARFV	0.9994	0.8962	0.0571	6.31	0.0541	189	1/982	1/7748
SNV	Breast	DOCK11_A1571S_1	HLA-B44:03	SEVKDLTKRI	0.9908	0.8505	0.2481	47.27	0.2221	26.47	1/982	1/7748
SNV	Breast	FMNL2_P245A_6	HLA-C02:02	MVMSHAHAV	0.9667	0.974	0.0491	137.24	0.2051	40.82	1/982	1/7748
SNV	Breast	KPNB1_V424F_9	HLA-C02:02	LMKDPSVVF	0.6718	0.9858	0.1755	137.13	0.2049	120.73	1/982	1/7748
SNV	Breast	LRRK2_L425P_5	HLA-A02:01	ALSTPLEQNV	0.9635	0.6397	1.023	440.11	0.6473	10	1/982	1/7748
SNV	Breast	PIK3CD_F632S_9	HLA-A02:01	YLDCELTKSL	0.9699	0.5698	0.9411	22.39	0.2269	21.99	1/982	1/7748
SNV	Breast	RNF20_K627R_7	HLA-B44:03	KEAEIIRQL	0.998	0.9235	0.0897	1.55	0.0247	48.58	1/982	1/7748
SNV	Breast	RNF20_K627R_5	HLA-B44:03	AEIIRQLKI	0.9978	0.827	0.2069	14.82	0.1432	48.58	1/982	1/7748
SNV	Breast	SVEP1_A2738D_8	HLA-B44:03	TETSMGSDVQY	0.9965	0.907	0.143	135.11	0.3062	2.37	1/982	1/7748
SNV	Breast	TBC1D13_W338S_10	HLA-A02:01	FLLPDVIRIS	0.9803	0.7131	1.2919	45.18	0.2919	25.02	1/982	1/7748
SNV	Breast	TRPV2_V224M_5	HLA-C02:02	KQWDMVSYL	0.8189	0.9306	1.3266	279.85	0.3278	16.75	1/982	1/7748
SNV	Breast	XRRA1_D182Y_2	HLA-A24:02	CYLGILPHL	0.9971	0.5348	0.0096	20.52	0.2766	4.81	1/982	1/7748
SNV	Breast	XRRA1_D182Y_1	HLA-A02:01	YLGILPHL	0.9953	0.6775	1.0119	57.03	0.3193	4.81	1/982	1/7748
SNV	Breast	BRINP3_F576V_9	HLA-A02:01	VLAVYVNPV	0.9938	0.6205	0.0653	25.65	0.2385	1.73	1/982	1/7748
SNV	Breast	BRINP3_F576V_1	HLA-B58:01	VGGSHSESW	0.9931	0.9848	0.193	113.35	0.4101	1.73	1/982	1/7748
SNV	Breast	CASP8_T390M_1	HLA-B27:05	MRYIPDEADF	0.9999	0.8581	0.1824	5.8	0.1528	3.46	1/982	1/7748
SNV	Breast	HOMER3_A56T_9	HLA-B27:05	YRIISIGGTK	0.9997	0.7067	0.578	185.71	0.4763	36.33	1/982	1/7748
SNV	Breast	HSPA4_R695L_9	HLA-B27:05	IRFQESEEL	0.9994	0.727	0.1914	12.67	0.2136	88.22	1/982	1/7748
SNV	Breast	LRRC15_A15T_2	HLA-B58:01	QTWGAGLAY	0.826	0.9917	0.1762	32.8	0.2489	33.83	1/982	1/7748
SNV	Breast	MYOF_C1919W_1	HLA-B27:05	WRLDMIPDL	0.9983	0.9053	0.2193	1.97	0.0612	77.79	1/982	1/7748
SNV	Breast	MYOF_C1919W_1	HLA-B27:05	WRLDMIPDLK	0.9998	0.9148	0.5181	38.07	0.3043	77.79	1/982	1/7748
SNV	Breast	MYOF_C1919W_9	HLA-B58:01	IPAKSPEKW	0.7885	0.8184	0.334	167.22	0.4658	77.79	1/982	1/7748
SNV	Breast	MYOF_C1919W_10	HLA-B58:01	IIPAKSPEKW	0.9914	0.7705	0.4679	83.15	0.3685	77.79	1/982	1/7748
SNV	Breast	MYOF_C1919W_11	HLA-B58:01	TIIPAKSPEKW	0.9996	0.9351	0.285	94.35	0.3851	77.79	1/982	1/7748
SNV	Breast	NOTCH4_C302F_5	HLA-B58:01	YTCLFPETW	0.9982	0.9974	0.003	3.56	0.0652	2.39	1/982	1/7748
SNV	Breast	RYR1_E1869D_6	HLA-A02:01	KMIEPDVFT	0.9602	0.5023	0.5871	153.33	0.4618	1.59	1/982	1/7748
SNV	Breast	GLUD1_G300V_2	HLA-C05:01	FVDKTFVV	1	0.9683	0.1973	110.01	0.2287	178.11	1/982	1/7748
SNV	Breast	MAML2_S999T_8	HLA-A32:01	AAYTPNQTL	0.8008	0.9422	0.4093	437.57	0.2718	3.09	1/982	1/7748
SNV	Breast	MAML2_S999T_5	HLA-B56:01	TPNQTLQQA	0.8584	0.6378	0.0656	48.53	0.0427	3.09	1/982	1/7748
SNV	Breast	MAML2_S999T_8	HLA-C01:02	AAYTPNQTL	0.8682	0.95	0.0171	240.09	0.0197	3.09	1/982	1/7748
SNV	Breast	ABCC3_P1187R_2	HLA-B27:05	YRYIISNRW	0.9977	0.8876	0.501	2.49	0.0788	3.87	1/982	1/7748
SNV	Breast	ABCC3_P1187R_2	HLA-B27:05	YRYIISNRWL	0.9994	0.843	0.957	22.09	0.2561	3.87	1/982	1/7748
SNV	Breast	ABCC9_A78T_8	HLA-B27:05	LRWILTFTL	0.9997	0.9164	0.0297	5.86	0.1536	1.37	1/982	1/7748
SNV	Breast	BCL9_P447S_7	HLA-B35:01	SPDEMVSPSM	0.9751	0.8494	0.3595	65	0.2676	22.35	1/982	1/7748
SNV	Breast	C11orf70_V219I_3	HLA-B35:01	SSIFKVSAY	0.9928	0.7225	0.1136	422.9	0.4679	11.37	1/982	1/7748
SNV	Breast	CACTIN_V324M_9	HLA-B35:01	SAEDDDLAM	0.6915	0.9516	0.6394	25.85	0.1931	9.61	1/982	1/7748
SNV	Breast	CACTIN_V324M_3	HLA-B35:01	LAMEMHEPY	0.9976	0.8253	0.0073	4.39	0.0828	9.61	1/982	1/7748
SNV	Breast	CACTIN_V324M_1	HLA-B35:01	MEMHEPYTF	0.8526	0.8529	0.6506	377.19	0.4535	9.61	1/982	1/7748
SNV	Breast	PTGIS_A370E_4	HLA-B35:01	MPMEDGREF	0.9995	0.9425	0.0436	1.04	0.0026	11.89	1/982	1/7748
SNV	Breast	PTGIS_A370E_6	HLA-B35:01	LAMPMEDGREF	0.9996	0.9186	0.739	90.01	0.297	11.89	1/982	1/7748
SNV	Breast	RAB18_T32R_1	HLA-C04:01	RFDPELAATI	0.9992	0.8966	0.0566	142.75	0.0837	87.9	1/982	1/7748
SNV	Breast	TBC1D4_Y1083N_5	HLA-B35:01	SPSLNAAPW	0.9347	0.8754	0.2356	180.56	0.368	13.52	1/982	1/7748
SNV	Breast	TBC1D4_Y1083N_1	HLA-B35:01	NAAPWFLTL	0.9901	0.8018	0.1984	172.37	0.3632	13.52	1/982	1/7748
SNV	Breast	TBC1D4_Y1083N_1	HLA-C02:02	NAAPWFLTL	0.9377	0.9556	0.0126	86.58	0.145	13.52	1/982	1/7748
SNV	Breast	TRAIP_L267M_9	HLA-B35:01	SADKEIMSM	0.9568	0.9177	0.4542	31.89	0.2085	14.11	1/982	1/7748
SNV	Breast	TRAIP_L267M_9	HLA-C02:02	SADKEIMSM	0.8392	0.9693	0.1174	188.97	0.2569	14.11	1/982	1/7748
SNV	Breast	TRAIP_L267M_3	HLA-C02:02	MSMKKKLTM	0.8497	0.9827	0.0916	396.18	0.4044	14.11	1/982	1/7748
SNV	Breast	ZBTB48_V32L_4	HLA-C04:01	TLDLGGLVF	0.9995	0.8672	0.0372	58.13	0.0588	12.89	1/982	1/7748
SNV	Breast	ATP11A_A836V_5	HLA-C15:02	MILEVHVGI	0.9972	0.7814	1.2734	178.2	0.4966	99.32	1/982	1/7748
SNV	Breast	B2M_Y83F_8	HLA-C15:02	FSKDWSFFL	0.9974	0.9205	0.0274	41.47	0.2443	3662.04	1/982	1/7748
SNV	Breast	B2M_Y83F_8	HLA-C12:03	FSKDWSFFL	0.9921	0.99	0.0575	53.83	0.3811	3662.04	1/982	1/7748
SNV	Breast	EPC1_A832V_8	HLA-C12:03	NIADNTVVM	0.9886	0.9907	0.3701	49.43	0.3663	11.83	1/982	1/7748
SNV	Breast	MPEG1_P418L_9	HLA-C15:02	FSCPSGYSL	0.9993	0.9238	0.046	201.39	0.5231	67.43	1/982	1/7748
SNV	Breast	MPEG1_P418L_5	HLA-C15:02	SGYSLVHLL	0.9755	0.8558	0.5717	141.89	0.4562	67.43	1/982	1/7748
SNV	Breast	MPEG1_P418L_9	HLA-C12:03	FSCPSGYSL	0.9964	0.985	0.065	91.18	0.4978	67.43	1/982	1/7748
SNV	Breast	MPEG1_P418L_5	HLA-C12:03	SGYSLVHLL	0.8363	0.9769	0.523	18.36	0.1977	67.43	1/982	1/7748
SNV	Breast	PLCB4_T898M_2	HLA-A02:01	TMAALASGV	0.9827	0.6212	0.1526	440.96	0.6477	18.7	1/982	1/7748
SNV	Breast	PLCB4_T898M_9	HLA-C12:03	SSELRPTTM	0.828	0.9472	0.4442	313.52	0.8933	18.7	1/982	1/7748
SNV	Breast	TRPS1_P584L_8	HLA-A02:01	HLGEITYLF	0.8672	0.572	1.2328	330.14	0.5882	61.95	1/982	1/7748
SNV	Breast	TRPS1_P584L_9	HLA-B38:01	KHLGEITYL	0.9954	0.91	0.06	97.35	0.0697	61.95	1/982	1/7748
SNV	Breast	C12orf4_R541Q_7	HLA-A02:01	MLPQIFQV	0.9947	0.7072	1.1336	194.22	0.5022	21.75	1/982	1/7748
SNV	Breast	C12orf4_R541Q_8	HLA-A02:01	NMLPQIFQV	0.9953	0.6315	0.0041	1.26	0.013	21.75	1/982	1/7748
SNV	Breast	C12orf4_R541Q_4	HLA-A32:01	QIFQVSSTL	0.7413	0.9419	0.0843	142.51	0.1739	21.75	1/982	1/7748
SNV	Breast	C12orf4_R541Q_2	HLA-B38:01	FQVSSTLTL	0.9657	0.9633	0.0136	63.19	0.0531	21.75	1/982	1/7748
SNV	Breast	C12orf4_R541Q_4	HLA-C12:03	QIFQVSSTL	0.9825	0.9823	0.3089	17.69	0.1935	21.75	1/982	1/7748
SNV	Breast	C12orf4_R541Q_2	HLA-C12:03	FQVSSTLTL	0.9975	0.9731	0.1878	15.75	0.1806	21.75	1/982	1/7748
SNV	Breast	MTFP1_R11H_2	HLA-B38:01	EHDLYRDTW	0.7563	0.9775	0.4795	45.26	0.0418	3.57	1/982	1/7748
SNV	Breast	SLC26A1_D669E_8	HLA-A02:01	FLGEGPGETA	0.9789	0.7999	0.797	229.07	0.5289	3.67	1/982	1/7748
SNV	Breast	WDR19_D772E_5	HLA-A02:01	HLAPEQIPFI	0.995	0.6948	0.4243	49.88	0.3021	18.52	1/982	1/7748
SNV	Breast	WDR19_D772E_5	HLA-A32:01	HLAPEQIPF	0.9795	0.9845	0.3815	186.47	0.1946	18.52	1/982	1/7748
SNV	Breast	WDR19_D772E_5	HLA-C12:03	HLAPEQIPF	0.9316	0.9905	0.6408	452.16	1.0336	18.52	1/982	1/7748
SNV	Breast	CTNNAL1_K439N_8	HLA-A02:01	ALAEYACNL	0.9919	0.517	0.2256	4.58	0.0976	25.77	1/982	1/7748
SNV	Breast	LCA5_K223N_7	HLA-B38:01	ERDDLANKL	0.9926	0.6936	0.1274	23.13	0.0306	7.75	1/982	1/7748
SNV	Breast	MYO16_K987N_6	HLA-C12:03	IIGENNNYL	0.9292	0.9777	0.9444	481.19	1.0592	1.22	1/982	1/7748
SNV	Breast	PLXNB3_D1730E_4	HLA-A02:01	YLFELLDEL	0.9976	0.6539	0.0055	1.12	0.0084	4.47	1/982	1/7748
SNV	Breast	PLXNB3_D1730E_8	HLA-C12:03	IAVKYLFEL	0.9938	0.9883	0.055	95.5	0.5099	4.47	1/982	1/7748
SNV	Breast	PLXNB3_D1730E_4	HLA-C12:03	YLFELLDEL	0.9819	0.9903	0.222	22.94	0.2302	4.47	1/982	1/7748
SNV	Breast	SLIT2_C620F_9	HLA-C12:03	MLRSNRITF	0.921	0.9898	0.8845	42.62	0.3405	5.31	1/982	1/7748
SNV	Breast	SLIT2_C620F_3	HLA-C12:03	ITFVGNDSF	0.6749	0.9575	0.1929	40.53	0.3318	5.31	1/982	1/7748
SNV	Breast	ABCD1_V250M_10	HLA-A24:02	AWPSAIAGLM	0.9697	0.6004	0.3914	496.68	0.696	11.92	1/982	1/7748
SNV	Breast	ABCD1_V250M_7	HLA-C12:03	SAIAGLMVF	0.986	0.9592	0.0351	4.01	0.0419	11.92	1/982	1/7748
SNV	Breast	ABCD1_V250M_1	HLA-C12:03	MVFLTANVL	0.9737	0.9799	0.3334	10.68	0.1304	11.92	1/982	1/7748
SNV	Breast	DENND5A_R471Q_5	HLA-A25:01	ETIAQLQAL	0.9988	0.9291	0.0098	29.06	0.013	25.55	1/982	1/7748
SNV	Breast	DENND5A_R471Q_8	HLA-B44:03	KENETIAQL	0.9804	0.9265	0.1409	3.3	0.0671	25.55	1/982	1/7748
SNV	Breast	DENND5A_R471Q_5	HLA-C12:03	ETIAQLQAL	0.8303	0.9887	0.6194	188.36	0.7101	25.55	1/982	1/7748
SNV	Breast	DMD_G285V_8	HLA-C12:03	ITVSLAQVY	0.5402	0.9177	0.2918	75.86	0.4548	2.76	1/982	1/7748
SNV	Breast	EXT2_R182Q_4	HLA-C04:01	RWDQGTNHL	0.9989	0.7144	0.0026	4.5	0.0112	64.39	1/982	1/7748
SNV	Breast	EXT2_R182Q_5	HLA-C04:01	SRWDQGTNHL	0.9992	0.756	1.0331	318.18	0.1229	64.39	1/982	1/7748
SNV	Breast	EXT2_R182Q_4	HLA-C04:01	RWDQGTNHLL	0.9996	0.791	0.0194	54.8	0.0577	64.39	1/982	1/7748
SNV	Breast	FBXW8_D392A_1	HLA-C12:03	AVSANQVAF	0.8638	0.9871	0.3176	119.39	0.5695	19.25	1/982	1/7748
SNV	Breast	IL17RD_V478I_9	HLA-C12:03	AALSKFIAI	0.9929	0.9771	0.1294	19.25	0.204	5.01	1/982	1/7748
SNV	Breast	MFAP5_S2L_9	HLA-A24:02	LLGPKVLLF	0.9957	0.5565	0.2505	46.33	0.3579	57.1	1/982	1/7748
SNV	Breast	MS4A4A_V99A_2	HLA-C12:03	SAYIGYTI	0.9836	0.9464	1.0953	371.3	0.9564	8.15	1/982	1/7748
SNV	Breast	MS4A4A_V99A_7	HLA-C12:03	GSNPISAYI	0.8848	0.9705	1.015	191.05	0.7155	8.15	1/982	1/7748
SNV	Breast	MS4A4A_V99A_3	HLA-C12:03	ISAYIGYTI	0.9299	0.9519	1.3041	91.89	0.4996	8.15	1/982	1/7748
SNV	Breast	NBEA_L800F_4	HLA-C12:03	RLMFHTNTV	0.694	0.9707	1.3946	93.53	0.5043	3.85	1/982	1/7748
SNV	Breast	PAK2_R417Q_6	HLA-B44:03	PEVVTQKAY	0.838	0.9001	0.2665	17.65	0.1519	53.55	1/982	1/7748
SNV	Breast	PIK3CA_H1047L_9	HLA-C12:03	FMKQMNDAL	0.9933	0.9908	0.4559	372.81	0.958	9.83	2/982	2/7748
SNV	Breast	PTPRJ_R1070H_8	HLA-B44:03	AENRGKNHY	0.9993	0.948	0.0724	1.65	0.0288	19.77	1/982	1/7748
SNV	Breast	RNF214_E151A_1	HLA-B44:03	AEKSPQTSI	0.9892	0.8268	0.3121	30.04	0.1817	6.59	1/982	1/7748
SNV	Breast	TBC1D8_F564L_9	HLA-C12:03	RSLPEHPAL	0.9787	0.9861	0.3493	25.43	0.2457	28.04	1/982	1/7748
SNV	Breast	CTLA4_P137L_5	HLA-C06:02	LMYPLPYYL	0.9928	0.9933	0.715	318.01	0.1634	2.29	1/982	1/7748
SNV	Breast	PRR14_T300I_3	HLA-A68:01	EGIASVSPR	0.9992	0.9085	0.5903	102.07	0.3835	44.28	1/982	1/7748
SNV	Breast	PRR14_T300I_10	HLA-B44:02	AEQSGAAEGI	0.9335	0.6167	0.2175	216.26	0.3288	44.28	1/982	1/7748
SNV	Breast	BTBD8_L316F_10	HLA-A24:02	FFQKPVPRTF	0.9971	0.5152	0.1941	2.34	0.0756	1.16	1/982	1/7748
SNV	Breast	BTBD8_L316F_11	HLA-A24:02	NFFQKPVPRTF	0.9995	0.5283	0.3215	18.33	0.2669	1.16	1/982	1/7748
SNV	Breast	AKAP3_P509L_2	HLA-C05:01	YLPEKPENF	0.7705	0.9639	0.1829	372.08	0.366	1.17	1/982	1/7748
SNV	Breast	ARMC9_P777Q_6	HLA-A02:01	MLDWNQPKA	0.9885	0.6903	0.5409	246.43	0.5408	5.04	1/982	1/7748
SNV	Breast	ARMC9_P777T_6	HLA-A02:01	MLDWNTPKA	0.9925	0.6098	0.3297	36.65	0.2715	5.04	1/982	1/7748
SNV	Breast	ARMC9_P777T_6	HLA-C05:01	MLDWNTPKA	0.9997	0.9754	0.5945	171.35	0.2709	5.04	1/982	1/7748
SNV	Breast	E4F1_T330A_7	HLA-C05:01	VTDAKGAVI	0.9999	0.9033	0.012	2.58	0.0345	29.39	1/982	1/7748
SNV	Breast	RNF111_P823L_5	HLA-A11:01	ATYTLGALH	0.9925	0.6675	0.4099	344.31	0.4937	3.62	1/982	1/7748
SNV	Breast	RNF111_P823L_2	HLA-A02:01	TLGALHPHL	0.9839	0.7052	0.3379	139.58	0.4458	3.62	1/982	1/7748
SNV	Breast	ST13_A152D_4	HLA-A02:01	ILYDKRASV	0.9904	0.5253	0.1218	2.25	0.0511	104.62	1/982	1/7748
SNV	Breast	BZW2_D44Y_1	HLA-A02:01	YLEAVAKFL	0.9677	0.7735	0.4818	123.09	0.4243	79.66	1/982	1/7748
SNV	Breast	CHD1L_D232H_8	HLA-C12:02	FSKEEVGHF	0.9972	0.9665	0.0315	165.83	0.2452	83.4	1/982	1/7748
SNV	Breast	DMXL2_D1665H_1	HLA-C12:02	HAALFYLSM	0.9571	0.9422	0.1703	235.18	0.3146	5.55	1/982	1/7748
SNV	Breast	FCRL1_G258E_7	HLA-B57:01	RSAPSGEGASF	0.9998	0.986	0.059	82.26	0.2688	3.13	1/982	1/7748
SNV	Breast	NUP155_T143P_5	HLA-A02:01	GLSEPILAV	0.9989	0.5825	0.1055	1.28	0.0137	22.38	1/982	1/7748
SNV	Breast	POT1_D420N_5	HLA-B57:01	TSLYNSKIW	0.9996	0.8233	0.1139	3.08	0.0377	12.62	1/982	1/7748
SNV	Breast	GABBR1_H136Y_1	HLA-A02:01	YLVGSSRSI	0.9585	0.6673	0.2899	263.02	0.5513	6.68	1/982	1/7748
SNV	Breast	GABBR1_H136Y_1	HLA-C03:04	YLVGSSRSI	0.8534	0.9921	0.5709	93.54	0.2675	6.68	1/982	1/7748
SNV	Breast	KIF20B_F275L_2	HLA-A32:01	SLFEIYNEY	0.7333	0.8933	0.2087	9.9	0.039	1.51	1/982	1/7748
SNV	Breast	LONP2_G569R_1	HLA-C03:04	RAICRAVAV	0.9662	0.9756	0.2284	170.46	0.3394	9.68	1/982	1/7748
SNV	Breast	RPN1_G158E_5	HLA-A32:01	VVFEENHYF	0.9502	0.8916	0.0537	4.25	0.0212	239.64	1/982	1/7748
SNV	Breast	RPN1_G158E_5	HLA-C14:02	VVFEENHYF	0.5606	0.9387	0.2981	44.02	0.3318	239.64	1/982	1/7748
SNV	Breast	RPN1_G158E_5	HLA-C03:04	VVFEENHYF	0.9879	0.9877	0.1565	36.05	0.1773	239.64	1/982	1/7748
SNV	Breast	STAMBP_E104D_7	HLA-C14:02	IAFPKADEL	0.7529	0.9218	0.1742	24.28	0.2366	7.92	1/982	1/7748
SNV	Breast	STAMBP_E104D_7	HLA-C03:04	IAFPKADEL	0.9998	0.9702	0.0115	1.54	0.0099	7.92	1/982	1/7748
SNV	Breast	STAMBP_E104D_3	HLA-C03:04	KADELKAEL	0.9991	0.9825	0.0457	30.23	0.1663	7.92	1/982	1/7748
SNV	Breast	ARFGEF2_R532H_8	HLA-C03:03	NAANIFEHL	0.9998	0.9899	0.1228	344.06	0.4421	7.05	1/982	1/7748
SNV	Breast	ATP5A1_M296V_10	HLA-A02:01	YLAPYSGCSV	0.9967	0.6244	0.2016	94.19	0.3838	30.21	1/982	1/7748
SNV	Breast	FAM91A1_S204F_3	HLA-A02:01	QLFGSLDYNV	0.9963	0.6873	0.2542	95.87	0.3861	23.06	1/982	1/7748
SNV	Breast	PBK_F40L_4	HLA-A02:01	KLGLGTGVNV	0.9157	0.8811	0.912	108.53	0.4027	15.77	1/982	1/7748
SNV	Breast	PBK_F40L_2	HLA-A02:01	GLGTGVNVYL	0.9467	0.638	0.7056	50.46	0.3036	15.77	1/982	1/7748
SNV	Breast	SPTAN1_T844A_3	HLA-C03:03	AVAQKGNAM	0.9908	0.9927	0.2706	69.28	0.2361	25.88	1/982	1/7748
SNV	Breast	SZT2_R2995L_8	HLA-A02:01	FSYDFHLLL	0.9768	0.568	0.2042	157.06	0.466	4.85	1/982	1/7748
SNV	Breast	SZT2_R2995L_3	HLA-A02:01	HLLLVHQHV	0.9852	0.501	0.3574	382.35	0.6163	4.85	1/982	1/7748
SNV	Breast	SZT2_R2995L_7	HLA-A24:02	SYDFHLLLV	0.9597	0.5671	0.1941	110.86	0.4672	4.85	1/982	1/7748
SNV	Breast	SZT2_R2995L_8	HLA-C03:03	FSYDFHLLL	0.9993	0.9847	0.0027	3.17	0.0331	4.85	1/982	1/7748
SNV	Breast	TNS2_F119L_7	HLA-C03:03	STLPRSLSL	0.9993	0.9924	0.0736	6.16	0.0579	46.44	1/982	1/7748
SNV	Breast	TUT1_R558Q_8	HLA-C03:03	VAANVTSQV	0.9923	0.9833	0.129	31.47	0.1687	22.69	1/982	1/7748
SNV	Breast	ZMYM4_T639K_5	HLA-C03:03	VSIPKGSTV	0.9855	0.9732	0.0452	10.47	0.0855	11.59	1/982	1/7748
SNV	Breast	CCDC170_R32W_7	HLA-B44:03	SEVPVTWEQL	0.9862	0.7081	0.1074	87.08	0.2732	3.8	1/982	1/7748
SNV	Breast	ZBTB41_H649R_8	HLA-C07:02	RRDHLTVRY	0.8513	0.7672	0.1399	122.44	0.2154	9.98	1/982	1/7748
SNV	Breast	AKAP17A_A385T_6	HLA-C12:03	LSRAKTVKL	0.9811	0.9843	0.2566	70.26	0.4369	27.32	1/982	1/7748
SNV	Breast	ARID1B_G1041R_3	HLA-C12:03	TTREKITKV	0.8411	0.9563	0.5679	270.91	0.8434	5.8	1/982	1/7748
SNV	Breast	BTD_G451D_7	HLA-B15:01	GLHTVHDTY	0.9984	0.8215	0.0838	5.39	0.0541	5.18	1/982	1/7748
SNV	Breast	BTD_G451D_7	HLA-B15:01	GLHTVHDTYY	0.9991	0.7988	0.7049	352.3	0.4589	5.18	1/982	1/7748
SNV	Breast	CYP27B1_H13N_7	HLA-C03:03	YASRVFNRV	0.9884	0.9911	0.3896	380.45	0.4584	6.71	1/982	1/7748
SNV	Breast	CYP27B1_H13N_7	HLA-C12:03	YASRVFNRV	0.9884	0.9813	0.1508	57.23	0.3918	6.71	1/982	1/7748
SNV	Breast	DHX15_L741V_5	HLA-B18:01	NEFVVTTKNY	0.9937	0.6744	0.0737	14.36	0.0721	13.65	1/982	1/7748
SNV	Breast	DHX15_L741V_3	HLA-C12:03	FVVTTKNYI	0.8503	0.9553	0.963	131.97	0.5963	13.65	1/982	1/7748
SNV	Breast	ESPL1_G1658V_8	HLA-A25:01	EIADQLQVL	0.9978	0.8387	0.0694	409.56	0.0642	3.81	1/982	1/7748
SNV	Breast	FOCAD_S757Y_6	HLA-C03:03	LSVPGYCYL	0.993	0.9894	0.0804	237.34	0.3848	6.19	1/982	1/7748
SNV	Breast	FOCAD_S757Y_6	HLA-C12:03	LSVPGYCYL	0.9392	0.9713	0.105	100.21	0.5227	6.19	1/982	1/7748
SNV	Breast	FOCAD_S757Y_1	HLA-C12:03	YCYLKLLSL	0.9266	0.9735	0.9444	357.96	0.9426	6.19	1/982	1/7748
SNV	Breast	FOXM1_E267Q_3	HLA-C12:03	WIQDHFPYF	0.9097	0.9851	0.433	182.76	0.6989	8.25	1/982	1/7748
SNV	Breast	KIAA1191_R29Q_5	HLA-B15:01	GIYRQAVSY	0.9996	0.7822	0.1599	12.97	0.1123	44.76	1/982	1/7748
SNV	Breast	MED13_E706A_6	HLA-B18:01	VEGDEAFLF	0.9501	0.9722	0.0892	69.34	0.1335	8.07	1/982	1/7748
SNV	Breast	MED13_E706A_9	HLA-C12:03	YAFVEGDEAF	0.999	0.9873	0.483	439.81	1.0222	8.07	1/982	1/7748
SNV	Breast	OBSCN_G3059R_9	HLA-B18:01	NEIDAQPGRY	0.9902	0.8257	0.0774	11.22	0.0655	1.85	1/982	1/7748
SNV	Breast	OBSCN_S5579L_9	HLA-C03:03	SASPRHGRL	0.9973	0.9845	0.2749	451.05	0.486	1.85	1/982	1/7748
SNV	Breast	OBSCN_S5579L_9	HLA-C12:03	SASPRHGRL	0.9228	0.9823	0.2471	52.29	0.3761	1.85	1/982	1/7748
SNV	Breast	PINK1_K137N_3	HLA-C12:03	KSNPGPDPL	0.9339	0.9316	0.2471	388.1	0.9731	4.27	1/982	1/7748
SNV	Breast	POLE_D1783N_1	HLA-B18:01	NETALCSNTF	0.9259	0.8379	0.2221	379.04	0.2421	5.46	1/982	1/7748
SNV	Breast	PRELP_A243T_5	HLA-C03:03	RVPTTIHQL	0.967	0.9896	0.2796	202.79	0.3632	11.06	1/982	1/7748
SNV	Breast	PRELP_A243T_5	HLA-C12:03	RVPTTIHQL	0.9433	0.9811	0.3889	25.87	0.2483	11.06	1/982	1/7748
SNV	Breast	RBM19_G520A_5	HLA-C12:03	TLFMAPNAV	0.8326	0.981	1.4264	123.83	0.5793	34.08	1/982	1/7748
SNV	Breast	SSBP4_Y26D_7	HLA-B15:01	KLALYVDEY	0.998	0.8814	0.2045	57.91	0.2338	49.02	1/982	1/7748
SNV	Breast	SSBP4_Y26D_1	HLA-B18:01	DEYLLHIGA	0.9276	0.5768	0.2089	158.57	0.1853	49.02	1/982	1/7748
SNV	Breast	SSBP4_Y26D_3	HLA-C03:03	YVDEYLLHI	0.99	0.9729	0.129	124.79	0.2975	49.02	1/982	1/7748
SNV	Breast	SSBP4_Y26D_3	HLA-C12:03	YVDEYLLHI	0.5729	0.9642	0.4729	39.68	0.3281	49.02	1/982	1/7748
SNV	Breast	TMPRSS11D_L93V_5	HLA-B18:01	KESNVRNQF	0.9213	0.9692	0.1296	94.54	0.1484	1.03	1/982	1/7748
SNV	Breast	TSPAN6_R84Q_1	HLA-C12:03	QASAWMLKL	0.9806	0.976	0.0961	260.11	0.8295	14.23	1/982	1/7748
SNV	Breast	KDM2A_I535V_1	HLA-C03:03	VPITKPHTM	0.9847	0.9815	0.689	215.14	0.3713	40.55	1/982	1/7748
SNV	Breast	KIAA0430_P443Q_4	HLA-C03:03	HTAQATVVL	0.9993	0.963	0.0861	5.14	0.0509	26.41	1/982	1/7748
SNV	Breast	KIAA0430_P443Q_8	HLA-C12:02	FANTHTAQA	0.9118	0.98	0.3234	323.77	0.3794	26.41	1/982	1/7748
SNV	Breast	KIAA0430_P443Q_4	HLA-C12:02	HTAQATVVL	0.8981	0.9265	0.0739	31.76	0.0845	26.41	1/982	1/7748
SNV	Breast	KMT2E_N87S_4	HLA-B15:01	ISKSEVGIF	0.9974	0.6653	0.4444	194.26	0.3675	33.14	1/982	1/7748
SNV	Breast	CASP6_T199M_2	HLA-A24:02	YMLPAGADF	0.9333	0.6658	0.3746	13.35	0.2401	64.12	1/982	1/7748
SNV	Breast	CASP6_T199M_3	HLA-A24:02	VYMLPAGADF	0.9954	0.7127	0.1036	1.37	0.0182	64.12	1/982	1/7748
SNV	Breast	CASP6_T199M_3	HLA-A24:02	VYMLPAGADFL	0.9975	0.6469	0.4199	396.97	0.6566	64.12	1/982	1/7748
SNV	Breast	CASP6_T199M_2	HLA-C12:03	YMLPAGADF	0.8153	0.9881	0.283	50.1	0.3686	64.12	1/982	1/7748
SNV	Breast	DACT1_P321S_4	HLA-C12:03	SSLSSPSSL	0.9823	0.9871	0.0594	28.28	0.2652	8.22	1/982	1/7748
SNV	Breast	MAGED1_R743C_7	HLA-A24:02	RYHQNACSRF	0.9953	0.5419	0.1848	56.77	0.3797	288.18	1/982	1/7748
SNV	Breast	SMARCD1_R155W_10	HLA-A24:02	AYMDLLAFEW	0.999	0.5862	0.1281	3.48	0.1112	32.94	1/982	1/7748
SNV	Breast	CNNM3_E443Q_8	HLA-C17:01	TLEDVIEQI	0.6609	0.9351	0.1991	275.27	0.3583	31.14	1/982	1/7748
SNV	Breast	CPS1_S551L_9	HLA-C17:01	ATEDRQLFL	0.5302	0.7828	0.1566	127.74	0.2404	2.07	1/982	1/7748
SNV	Breast	CPS1_S551L_9	HLA-C15:02	ATEDRQLFL	0.974	0.9017	0.1871	22.99	0.1608	2.07	1/982	1/7748
SNV	Breast	EPOR_L500M_3	HLA-B42:02	EPMPPSYVA	0.8837	0.876	0.2481	399.43	0.1055	8.02	1/982	1/7748
SNV	Breast	ESPL1_S1153N_3	HLA-C15:02	CANPVLTAV	0.9996	0.9523	0.0571	101.32	0.3965	10.54	1/982	1/7748
SNV	Breast	MAST3_E168K_1	HLA-A32:01	KIVMMNHVY	0.9293	0.8762	0.2032	434.84	0.2711	7.09	1/982	1/7748
SNV	Breast	MAST3_E168K_6	HLA-C15:02	GTFDNKIVM	0.9945	0.8742	0.2236	9.92	0.0842	7.09	1/982	1/7748
SNV	Breast	MAST3_E168K_6	HLA-C15:02	GTFDNKIVMM	0.9977	0.8749	0.4921	462.89	0.7519	7.09	1/982	1/7748
SNV	Breast	NLN_Q367H_1	HLA-C15:02	HTEELKYSI	0.9889	0.932	0.6021	178.59	0.4969	19.32	1/982	1/7748
SNV	Breast	MAP3K1_E1419K_7	HLA-B52:01	IAFMAPKVL	0.9761	0.9164	0.1749	211.46	0.029	103.7	1/982	1/7748
SNV	Breast	MAP3K1_E1419K_7	HLA-C12:02	IAFMAPKVL	0.9933	0.9647	0.1736	28.86	0.0795	103.7	1/982	1/7748
SNV	Breast	MUC16_N4834Y_2	HLA-A24:02	TYVGTTGSAF	0.9969	0.6425	0.0645	8.06	0.1978	18.68	1/982	1/7748
SNV	Breast	MUC16_N4834Y_1	HLA-C12:02	YVGTTGSAF	0.905	0.9888	0.1549	43.08	0.1007	18.68	1/982	1/7748
SNV	Breast	ZNF462_G2107E_4	HLA-C12:02	KVHEKALTL	0.9729	0.9606	0.0638	19.02	0.0515	3.28	1/982	1/7748
SNV	Breast	ZSWIM3_I307M_3	HLA-C12:02	LSMYHTTRL	0.9937	0.958	0.4813	339.63	0.3892	5.81	1/982	1/7748
SNV	Breast	TARBP1_Q807E_4	HLA-A02:03	SQIERVVSM	0.9818	0.7686	1.1467	15.37	0.3614	42.98	1/982	1/7748
SNV	Breast	TARBP1_Q807E_4	HLA-C07:02	SQIERVVSM	0.9976	0.9771	0.0181	29.83	0.0976	42.98	1/982	1/7748
SNV	Breast	ABCF2_K351R_9	HLA-C07:02	ARFGHGSARL	0.996	0.9735	0.106	485.21	0.393	31.99	1/982	1/7748
SNV	Breast	AGMAT_P167L_4	HLA-C16:01	ITYLILQAM	0.9186	0.9646	0.4704	26.32	0.1961	3.81	1/982	1/7748
SNV	Breast	ALG14_K137T_4	HLA-C07:02	HRVTPDLVL	0.8591	0.9538	0.1528	50.65	0.1339	5.92	1/982	1/7748
SNV	Breast	BIRC6_I3039M_9	HLA-C16:01	SVGDGLFTM	0.919	0.9754	0.3575	12.49	0.1188	16.84	1/982	1/7748
SNV	Breast	C22orf23_T132I_9	HLA-C07:02	QRLQNIFAI	0.9906	0.9301	0.2181	46.43	0.1261	2.37	1/982	1/7748
SNV	Breast	C2orf76_T105A_5	HLA-C16:01	IASEAEIAF	0.7301	0.9707	0.0583	13.33	0.1247	25.2	1/982	1/7748
SNV	Breast	CABYR_T134M_9	HLA-C07:02	YAVPGTEQM	0.966	0.933	0.2943	132.34	0.2238	11.12	1/982	1/7748
SNV	Breast	CABYR_T134M_9	HLA-C16:01	YAVPGTEQM	0.9828	0.9734	0.0029	2.89	0.0206	11.12	1/982	1/7748
SNV	Breast	CACNA1H_L223V_8	HLA-C07:02	MRILVTLVL	0.9789	0.9759	0.1019	18.62	0.0742	40.97	1/982	1/7748
SNV	Breast	CACNA1H_L223V_2	HLA-C16:01	LVLDTLPML	0.9441	0.9652	1.2585	110.51	0.4459	40.97	1/982	1/7748
SNV	Breast	CASP8AP2_A708T_3	HLA-C07:02	GRTAAPVVM	0.8045	0.9594	0.3336	169.21	0.2503	7.06	1/982	1/7748
SNV	Breast	CASP8AP2_A708T_2	HLA-C16:01	RTAAPVVM	0.9974	0.99	1.0009	235.08	0.6223	7.06	1/982	1/7748
SNV	Breast	CASP8AP2_A708T_1	HLA-C16:01	TAAPVVMDV	0.8965	0.989	0.4427	280.24	0.6736	7.06	1/982	1/7748
SNV	Breast	CCDC110_S82L_3	HLA-B52:01	VQLEISEI	0.9689	0.8511	0.0853	433.99	0.0555	2	1/982	1/7748
SNV	Breast	CDPF1_T123M_9	HLA-B07:02	TPSQPGSRM	0.9994	0.5838	0.1126	2.79	0.0488	19.4	3/982	3/7748
SNV	Breast	CDPF1_T123M_9	HLA-B07:02	TPSQPGSRM	0.9994	0.5838	0.1126	2.79	0.0488	19.4	3/982	3/7748
SNV	Breast	CDPF1_T123M_9	HLA-B07:02	TPSQPGSRM	0.9994	0.5838	0.1126	2.79	0.0488	19.4	3/982	3/7748
SNV	Breast	CEP295_F1004I_6	HLA-C16:01	VAQHTITSL	0.975	0.9729	0.014	3.23	0.0261	4.69	1/982	1/7748
SNV	Breast	CLINT1_P548S_6	HLA-C16:01	ALIGGSMPM	0.9424	0.9807	0.6897	171.54	0.5426	31.56	1/982	1/7748
SNV	Breast	CLINT1_P548S_4	HLA-C16:01	IGGSMPMSM	0.7738	0.9544	0.7019	232.56	0.6192	31.56	1/982	1/7748
SNV	Breast	DCSTAMP_Q431R_1	HLA-B07:02	RPLGEVKRRL	0.9756	0.5952	0.3553	76.92	0.2424	1.01	1/982	1/7748
SNV	Breast	EIF2AK2_R356M_3	HLA-C16:01	SSMSKTKCL	0.7544	0.9837	0.4985	225.02	0.6096	16.19	1/982	1/7748
SNV	Breast	EIF4G3_R1100K_8	HLA-C16:01	SSASSLNKF	0.5822	0.98	0.1579	246.85	0.6366	23.28	1/982	1/7748
SNV	Breast	EIF4G3_R1100K_5	HLA-C16:01	SSLNKFSAL	0.9928	0.9822	0.0541	5.27	0.0508	23.28	1/982	1/7748
SNV	Breast	FAM120C_P903L_5	HLA-C16:01	MNHPLPSAL	0.9563	0.9814	0.2036	332.57	0.7228	2.69	1/982	1/7748
SNV	Breast	FAM219A_V91I_1	HLA-C16:01	IPNKGYSSL	0.5976	0.966	1.9315	185.13	0.5609	17.33	1/982	1/7748
SNV	Breast	GABPB2_A54T_7	HLA-C16:01	YGHYSTTEV	0.708	0.9765	1.2308	131.75	0.4821	5.77	1/982	1/7748
SNV	Breast	GNLY_S22F_2	HLA-C07:02	FFRLSPEYY	0.5371	0.9288	0.8844	322.7	0.3328	28.43	1/982	1/7748
SNV	Breast	GNLY_S22F_9	HLA-C16:01	LGNPGLVFF	0.7229	0.9913	0.6158	74.23	0.3643	28.43	1/982	1/7748
SNV	Breast	HTT_T2459A_4	HLA-C16:01	LGWASRTQF	0.7529	0.9593	1.0913	82.77	0.3864	15.4	1/982	1/7748
SNV	Breast	KLF11_A282V_5	HLA-C16:01	VSVPVPPVL	0.8788	0.986	0.0639	4.28	0.0382	12.62	1/982	1/7748
SNV	Breast	LIN54_I287M_9	HLA-C16:01	GTPSKTITM	0.6799	0.9909	0.2306	111.98	0.4486	7.98	1/982	1/7748
SNV	Breast	MAN2A2_R911Q_7	HLA-C07:02	FQVQPRQYL	0.923	0.877	0.1631	255.61	0.2987	9.52	1/982	1/7748
SNV	Breast	MAN2A2_R911Q_7	HLA-C16:01	FQVQPRQYL	0.9772	0.9496	1.0388	167.49	0.5369	9.52	1/982	1/7748
SNV	Breast	MASTL_K72R_7	HLA-C16:01	KADMINRNM	0.8359	0.976	0.3505	58.6	0.3162	16.07	1/982	1/7748
SNV	Breast	MBD5_S42A_7	HLA-C07:02	YVSPSGALL	0.8375	0.9383	1.2921	248.72	0.2955	3.46	1/982	1/7748
SNV	Breast	MBD5_S42A_7	HLA-C16:01	YVSPSGALL	0.9852	0.9663	0.0756	3.47	0.0303	3.46	1/982	1/7748
SNV	Breast	MBOAT1_R51H_6	HLA-C16:01	AAFWFHIYL	0.9478	0.9794	0.1633	75.09	0.3666	7.14	1/982	1/7748
SNV	Breast	MBTPS1_V1013A_6	HLA-C16:01	LGAMVALAF	0.7028	0.9847	1.42	474.3	0.8268	49.53	1/982	1/7748
SNV	Breast	MEGF8_R785H_1	HLA-B07:02	HPGSARLFPL	0.998	0.6527	0.0806	22.53	0.1617	5.16	1/982	1/7748
SNV	Breast	NFRKB_V1138M_3	HLA-C16:01	AAMSKTVAV	0.9961	0.9778	0.0377	2.43	0.0164	17.21	1/982	1/7748
SNV	Breast	NPHP4_A1263T_1	HLA-C07:02	TFTSHPQEL	0.7278	0.9518	0.1528	227.82	0.2852	2.69	1/982	1/7748
SNV	Breast	P3H1_T542M_9	HLA-C16:01	SAHLYYNVM	0.9075	0.9747	0.106	17.83	0.1585	12.32	1/982	1/7748
SNV	Breast	PEX14_A111T_8	HLA-C07:02	SRWRDYGTL	0.8397	0.8747	0.2011	363.76	0.3505	32.2	1/982	1/7748
SNV	Breast	PEX14_A111T_6	HLA-C07:02	WRDYGTLAI	0.8224	0.8794	0.659	127.06	0.2194	32.2	1/982	1/7748
SNV	Breast	PGBD1_M457I_5	HLA-C16:01	TVQEIRCVF	0.6844	0.9819	0.667	379.59	0.7603	11.94	1/982	1/7748
SNV	Breast	PGM5_I547T_7	HLA-C16:01	LSPLIATAL	0.9214	0.9684	0.4056	100.09	0.4254	2.32	1/982	1/7748
SNV	Breast	PIK3CA_S673T_7	HLA-C07:02	FFWHLKTEM	0.8437	0.9833	0.1925	256.23	0.299	5.71	1/982	1/7748
SNV	Breast	PITPNM2_P11S_6	HLA-C07:02	YRIPLSMTV	0.9043	0.8428	0.0226	3	0.0092	1.45	1/982	1/7748
SNV	Breast	PLOD1_T624M_6	HLA-C16:01	YIAPMMEKL	0.9707	0.9421	0.6358	26.95	0.1983	51.96	1/982	1/7748
SNV	Breast	REM1_R15Q_1	HLA-C07:02	QRASTPLPL	0.965	0.9363	0.172	266.1	0.3044	5.55	1/982	1/7748
SNV	Breast	RMND1_K110T_6	HLA-C07:02	RRVTHTPNL	0.9252	0.9518	0.0676	12.48	0.0577	314.91	1/982	1/7748
SNV	Breast	RMND1_K110T_5	HLA-C16:01	RVTHTPNLL	0.8528	0.9738	0.5269	46.28	0.2781	314.91	1/982	1/7748
SNV	Breast	RPS18_Q97H_3	HLA-C16:01	YSHVLANGL	0.8634	0.979	0.1253	61.35	0.3255	2087.87	1/982	1/7748
SNV	Breast	SETDB2_T226A_5	HLA-C07:02	FSFNAYVQL	0.9719	0.8778	1.2188	450.72	0.3821	11.46	1/982	1/7748
SNV	Breast	SETDB2_T226A_5	HLA-C16:01	FSFNAYVQL	0.9847	0.9802	0.0187	7.11	0.0712	11.46	1/982	1/7748
SNV	Breast	SIK3_A629V_6	HLA-C07:02	RFSDGVASI	0.6699	0.9203	0.418	109.94	0.2038	26.48	1/982	1/7748
SNV	Breast	SIK3_A629V_7	HLA-C07:02	RRFSDGVASI	0.972	0.9106	0.2234	296.81	0.3205	26.48	1/982	1/7748
SNV	Breast	SIRT3_L164M_11	HLA-B07:02	IPDFRSPGSGM	0.9999	0.5099	0.3335	13.08	0.1334	16.85	1/982	1/7748
SNV	Breast	SIRT3_L164M_8	HLA-C07:02	FRSPGSGMY	0.7985	0.9602	0.0435	23.5	0.0844	16.85	1/982	1/7748
SNV	Breast	SLC43A3_V26L_5	HLA-A23:01	GFAGLLFGW	0.9724	0.6385	0.2178	63.59	0.3772	10.25	1/982	1/7748
SNV	Breast	SSR2_L113M_9	HLA-C16:01	FTSATITYM	0.9398	0.9724	0.0711	17.94	0.1591	128.92	1/982	1/7748
SNV	Breast	ST3GAL1_S227F_9	HLA-C16:01	SAITTGTIF	0.7152	0.9569	0.1253	18.35	0.1613	48.73	1/982	1/7748
SNV	Breast	SUSD2_R811M_3	HLA-C07:02	RRMKGNTHV	0.7665	0.9154	0.1325	129.95	0.2218	63.76	1/982	1/7748
SNV	Breast	TIMELESS_A960V_6	HLA-C16:01	ILPNGVESL	0.9567	0.9859	0.7424	421.59	0.79	29.75	1/982	1/7748
SNV	Breast	TMEM70_I117V_5	HLA-C16:01	STSLVGLTF	0.6509	0.9747	0.12	36.89	0.2461	28.87	1/982	1/7748
SNV	Breast	TRANK1_R1433H_2	HLA-C07:02	FHFSDLRSL	0.6107	0.9383	0.0969	106.75	0.2006	8.89	1/982	1/7748
SNV	Breast	TRANK1_R1433H_1	HLA-C07:02	HFSDLRSLF	0.9331	0.961	0.0926	29.02	0.0961	8.89	1/982	1/7748
SNV	Breast	TTC17_V477I_5	HLA-C16:01	KSSPIAHSI	0.944	0.9578	0.0668	7.49	0.075	13.07	1/982	1/7748
SNV	Breast	WDR11_I613V_5	HLA-A23:01	NFPTVTALEW	0.9583	0.5409	0.4295	43.13	0.3349	14.1	1/982	1/7748
SNV	Breast	WDR11_I613V_6	HLA-C16:01	KNFPTVTAL	0.9496	0.9838	0.3205	20	0.1699	14.1	1/982	1/7748
SNV	Breast	YARS2_H331Y_3	HLA-B52:01	IDYIMQLHV	0.8035	0.8721	0.0775	294.05	0.0418	24.92	1/982	1/7748
SNV	Breast	DPT_V123E_4	HLA-B44:03	FESELDREW	0.9993	0.9617	0.003	1.93	0.0362	7.89	1/982	1/7748
SNV	Breast	DPT_V123E_2	HLA-B44:03	SELDREWQF	0.9991	0.895	0.0174	1.48	0.0222	7.89	1/982	1/7748
SNV	Breast	DPT_V123E_2	HLA-B44:03	SELDREWQFY	0.9996	0.9206	0.0201	2.71	0.0544	7.89	1/982	1/7748
SNV	Breast	EHD1_F42V_6	HLA-B44:03	EEHYRVHEF	0.9991	0.8578	0.0604	2.06	0.0392	47.36	1/982	1/7748
SNV	Breast	EHD1_F42V_2	HLA-C16:01	RVHEFHSPAL	0.9974	0.98	1.5263	317.64	0.7098	47.36	1/982	1/7748
SNV	Breast	EPG5_R1454H_8	HLA-B44:03	MEYLNMEHIY	0.9996	0.8766	0.1384	19.64	0.1573	12.85	1/982	1/7748
SNV	Breast	FRMD4B_V951L_9	HLA-B15:03	SRASSYSSL	0.6898	0.8238	1.1336	179.79	0.693	13.29	1/982	1/7748
SNV	Breast	FRMD4B_V951L_8	HLA-C16:01	RASSYSSL	0.9718	0.9707	0.7019	415.49	0.7859	13.29	1/982	1/7748
SNV	Breast	HDX_Q319K_5	HLA-B15:03	SMRAKIPSY	0.6454	0.5272	0.1605	4.3	0.0817	2.27	1/982	1/7748
SNV	Breast	HDX_Q319K_2	HLA-B15:03	AKIPSYSRFY	0.903	0.7172	1.9425	29.84	0.3262	2.27	1/982	1/7748
SNV	Breast	PIK3CA_N1044Y_9	HLA-B44:03	LEYFMKQMY	0.99	0.9453	0.1101	7.54	0.1077	16.9	1/982	1/7748
SNV	Breast	RIBC2_D338N_4	HLA-B15:03	RQRNLRRAL	0.5869	0.676	0.6402	32.02	0.3393	3.08	1/982	1/7748
SNV	Breast	CFH_P273T_2	HLA-C15:02	ITNGDYSPL	0.9964	0.9002	0.5068	370.75	0.6878	32.55	1/982	1/7748
SNV	Breast	CLDN12_V154D_4	HLA-C15:02	SIWDIFYNI	0.9924	0.8596	1.0499	339.87	0.6592	51.7	1/982	1/7748
SNV	Breast	GALNT14_K415N_5	HLA-C15:02	LSIPNESSI	0.9986	0.8177	0.2386	122.24	0.4298	1.95	1/982	1/7748
SNV	Breast	PIGN_S856L_3	HLA-A02:03	QLLSKSLFL	0.9674	0.7326	0.297	259.53	1.101	35.44	1/982	1/7748
SNV	Breast	PIGN_S856L_2	HLA-A02:03	LLSKSLFLI	0.9951	0.808	0.0199	141.7	0.905	35.44	1/982	1/7748
SNV	Breast	PIGN_S856L_9	HLA-C15:02	AVQLTTQLL	0.9905	0.8942	0.5941	368.05	0.6854	35.44	1/982	1/7748
SNV	Breast	TP53TG5_P254A_8	HLA-B15:02	LEMPMWHAY	0.9032	0.8871	0.166	464.29	0.26	1.53	1/982	1/7748
SNV	Breast	EFCAB5_A411P_7	HLA-B14:02	DRQRTLPLL	0.9992	0.7969	0.0712	215.23	0.0577	1.04	1/982	1/7748
SNV	Breast	EFCAB5_A411P_5	HLA-B14:02	QRTLPLLEL	0.9994	0.8758	0.1215	428.89	0.0796	1.04	1/982	1/7748
SNV	Breast	EFCAB5_A411P_4	HLA-C15:02	RTLPLLEL	0.9999	0.9722	0.9909	97.31	0.3891	1.04	1/982	1/7748
SNV	Breast	EFCAB5_A411P_4	HLA-C15:02	RTLPLLELF	0.9604	0.9676	0.9464	85.38	0.3653	1.04	1/982	1/7748
SNV	Breast	FLT4_T287A_5	HLA-C15:02	RSQQAHTEL	0.999	0.8443	0.1703	22.24	0.1571	2.25	1/982	1/7748
SNV	Breast	MED24_E193D_3	HLA-C08:02	AIDHSLLKL	0.9999	0.9729	0.0127	193.24	0.0966	268.38	1/982	1/7748
SNV	Breast	MED24_E193D_3	HLA-C15:02	AIDHSLLKL	0.9894	0.8982	0.0756	99.44	0.3931	268.38	1/982	1/7748
SNV	Breast	NBPF12_E125Q_4	HLA-C15:02	SLNQHLQAL	0.9388	0.8269	0.5941	232.58	0.5553	7.21	2/982	2/7748
SNV	Breast	NES_N1541S_8	HLA-C15:02	GVNGQGPSL	0.992	0.9472	0.9909	109.17	0.4098	11.44	1/982	1/7748
SNV	Breast	NQO2_S190T_8	HLA-C15:02	KVLAPQITF	0.8076	0.7768	1.5145	33.09	0.2064	12.63	1/982	1/7748
SNV	Breast	TANK_A192V_7	HLA-C15:02	KTDKQEVLF	0.8879	0.87	0.393	113.75	0.4171	39.87	1/982	1/7748
SNV	Breast	VAV1_V715I_9	HLA-C15:02	ISIKYNVEI	0.9997	0.8897	0.1389	25.91	0.1741	2.15	1/982	1/7748
SNV	Breast	VPS13B_T2459A_7	HLA-B51:01	DPLVTPAAL	0.9068	0.6373	0.1863	109.26	0.2391	9.6	1/982	1/7748
SNV	Breast	ABCA8_L383F_4	HLA-C04:01	DYDFNSNAF	0.9387	0.5666	0.123	50.11	0.0559	2.11	1/982	1/7748
SNV	Breast	ABCB10_F262L_1	HLA-C04:01	LFDKTRTGEL	0.9995	0.7769	0.0815	420	0.1419	65.39	1/982	1/7748
SNV	Breast	ACAD10_E99Q_8	HLA-C07:01	MRAEITAQGF	0.9986	0.5959	0.0851	392.73	0.1576	16.01	1/982	1/7748
SNV	Breast	APBA2_E92K_1	HLA-B18:01	KEEEGITYY	0.9232	0.942	0.1181	28.22	0.0959	1.13	1/982	1/7748
SNV	Breast	ARMC3_I196M_9	HLA-B18:01	QELNAIPPM	0.9838	0.953	0.0666	30.86	0.0996	1.71	1/982	1/7748
SNV	Breast	ASPRV1_S213F_5	HLA-A02:01	FLVDFGAQV	0.9991	0.7297	0.0029	1.14	0.0098	3.33	1/982	1/7748
SNV	Breast	ASPRV1_S213F_5	HLA-A02:01	FLVDFGAQVS	0.9848	0.6184	1.2161	296.9	0.571	3.33	1/982	1/7748
SNV	Breast	ASPRV1_S213F_5	HLA-A02:01	FLVDFGAQVSV	0.9997	0.6375	0.5409	14.23	0.1881	3.33	1/982	1/7748
SNV	Breast	CAMKK2_D287N_3	HLA-B18:01	SENQARFY	0.9975	0.9152	0.1296	283.25	0.2221	50.75	1/982	1/7748
SNV	Breast	CAMKK2_D287N_3	HLA-B18:01	SENQARFYF	0.9966	0.8555	0.0408	2.93	0.017	50.75	1/982	1/7748
SNV	Breast	CAMSAP2_R230W_4	HLA-C07:01	ARYWKEQTL	0.997	0.7604	0.0063	11.95	0.0239	71.4	1/982	1/7748
SNV	Breast	CCDC88A_R321T_8	HLA-A02:01	ALREKAVTV	0.9346	0.5082	0.6406	60.18	0.3262	9	1/982	1/7748
SNV	Breast	CDC37L1_E251Q_1	HLA-B18:01	QEEGYFEAF	0.9948	0.98	0.0166	4.02	0.0308	25.48	1/982	1/7748
SNV	Breast	CHI3L2_S259L_3	HLA-B35:02	MPLEKVVM	0.9804	0.9901	0.4631	210.41	0.1312	62.25	1/982	1/7748
SNV	Breast	CRMP1_P470S_1	HLA-C07:01	SRKAFPEHL	0.9976	0.8428	0.0063	116.64	0.0941	11.42	1/982	1/7748
SNV	Breast	DDX17_Q653E_1	HLA-B18:01	EEYGAGTY	0.9983	0.8154	0.0638	2.53	0.0118	509	1/982	1/7748
SNV	Breast	DDX17_Q653E_2	HLA-B18:01	AEEYGAGTY	0.9022	0.7969	0.1705	76.17	0.138	509	1/982	1/7748
SNV	Breast	DIP2C_G1515A_8	HLA-B18:01	EEHYLIVAV	0.9421	0.9747	0.0824	66.1	0.1312	22.59	1/982	1/7748
SNV	Breast	DONSON_I476M_1	HLA-A02:01	MMPHSLHSL	0.9748	0.714	0.047	292.29	0.5684	20.38	1/982	1/7748
SNV	Breast	EIF4A3_L354F_1	HLA-B35:02	FPNNRELYI	0.9918	0.773	0.1285	29.78	0.0528	72.44	1/982	1/7748
SNV	Breast	EIF4A3_L354F_4	HLA-C04:01	NYDFPNNREL	0.9993	0.5966	0.0633	64.86	0.0616	72.44	1/982	1/7748
SNV	Breast	EVPL_M531I_6	HLA-A02:01	KLLTQITRL	0.9889	0.6805	0.2101	2.99	0.0654	41.3	1/982	1/7748
SNV	Breast	FAM120A_H254Y_8	HLA-B18:01	DEDLASFY	0.9973	0.8768	0.2617	134.79	0.176	235.8	1/982	1/7748
SNV	Breast	FAM120A_H254Y_8	HLA-B18:01	DEDLASFYW	0.977	0.9528	0.398	194.12	0.1968	235.8	1/982	1/7748
SNV	Breast	FAM120A_H338Y_4	HLA-C07:01	MSFYPPHYL	0.9803	0.612	1.5623	97.07	0.0859	235.8	1/982	1/7748
SNV	Breast	FAM13B_R567T_7	HLA-B18:01	DEKREDTTPY	0.9836	0.8393	0.5566	201.83	0.1991	22.19	1/982	1/7748
SNV	Breast	FAM65A_R968Q_3	HLA-A24:02	ASQPGFLTF	0.9752	0.5546	0.3051	35.67	0.33	31.48	1/982	1/7748
SNV	Breast	FAM65A_R968Q_2	HLA-A24:02	SQPGFLTFW	0.9531	0.6332	0.5245	77.34	0.4167	31.48	1/982	1/7748
SNV	Breast	FBXO32_L114V_9	HLA-A02:01	RLDFSTAIV	0.9888	0.5168	0.2691	124.79	0.4266	39.14	1/982	2/7748
SNV	Breast	FGD2_S539L_2	HLA-A02:01	SLATPDQSL	0.8612	0.7188	0.947	146.62	0.4542	5.55	1/982	1/7748
SNV	Breast	FHOD3_Q1160E_4	HLA-C04:01	DFDELQDNL	0.9943	0.8245	0.0727	150.5	0.0857	2.57	1/982	1/7748
SNV	Breast	GPRASP2_Q778E_2	HLA-B18:01	IEIVIKMF	0.9996	0.7856	0.0975	253.27	0.2145	5.59	1/982	1/7748
SNV	Breast	HMCN1_D3139N_3	HLA-C07:01	GRNDKNFHL	0.9967	0.7902	0.044	24.11	0.0425	5.75	1/982	1/7748
SNV	Breast	LAMP2_S107F_11	HLA-A24:02	SWIANFTKAAF	0.9989	0.5508	0.4895	68.3	0.3995	175.92	1/982	1/7748
SNV	Breast	LRRK1_A981S_8	HLA-A02:01	FLAKFEISL	0.9973	0.6978	0.0109	1.35	0.0153	8.46	1/982	1/7748
SNV	Breast	LRRN3_H326D_3	HLA-C04:01	YIDPNAFF	1	0.575	0.0939	90.77	0.0717	1.12	1/982	1/7748
SNV	Breast	LRRN3_H326D_4	HLA-C04:01	SYIDPNAFF	0.893	0.5427	0.3454	45.8	0.0541	1.12	1/982	1/7748
SNV	Breast	LY86_E137K_5	HLA-B35:02	IPQGKYQVL	0.7702	0.8838	0.0828	100.04	0.0977	34.29	1/982	1/7748
SNV	Breast	MAB21L1_E73K_6	HLA-A02:01	VISPTKFEV	0.983	0.7181	0.3735	269.88	0.5555	1.53	2/982	2/7748
SNV	Breast	MAB21L1_E73K_8	HLA-B18:01	LEVISPTKF	0.9962	0.9576	0.0236	7.91	0.0533	1.53	1/982	1/7748
SNV	Breast	MAB21L1_E73K_4	HLA-B35:02	SPTKFEVVL	0.8172	0.9345	0.0521	11.02	0.0345	1.53	1/982	1/7748
SNV	Breast	MED26_V532L_1	HLA-B35:02	LPQSPPTDL	0.901	0.9797	0.065	87.34	0.0942	6.2	1/982	1/7748
SNV	Breast	MET_D414N_3	HLA-C07:01	RRNEYRTEF	0.9979	0.7152	0.0211	5.63	0.0104	7.41	1/982	1/7748
SNV	Breast	NCAPD3_E1253Q_4	HLA-B18:01	SELQYDMKKY	0.9834	0.8355	0.2804	184.88	0.1941	11.44	1/982	1/7748
SNV	Breast	OGDH_E518K_5	HLA-B18:01	NEMDKPMF	0.9995	0.8597	0.197	77.05	0.1386	84.24	1/982	1/7748
SNV	Breast	OGDH_E518K_1	HLA-B35:02	KPMFTQPLM	0.8248	0.8969	0.3	253.19	0.1423	84.24	1/982	1/7748
SNV	Breast	OXER1_E156Q_6	HLA-A24:02	YYLLHQTW	0.9972	0.8934	0.8539	35.32	0.3289	1.3	1/982	1/7748
SNV	Breast	OXER1_E156Q_7	HLA-A24:02	DYYLLHQTW	0.9957	0.7965	0.4507	4.27	0.1288	1.3	1/982	1/7748
SNV	Breast	OXER1_E156Q_5	HLA-A24:02	YLLHQTWRF	0.9858	0.7578	0.1288	78.6	0.419	1.3	1/982	1/7748
SNV	Breast	OXER1_E156Q_6	HLA-A24:02	YYLLHQTWRF	0.9948	0.7415	0.119	4.14	0.1253	1.3	1/982	1/7748
SNV	Breast	OXER1_E156Q_5	HLA-A02:01	YLLHQTWRF	0.8938	0.7353	0.496	438.98	0.6467	1.3	1/982	1/7748
SNV	Breast	PCDHGB7_E346K_3	HLA-B35:02	SPKIIITSL	0.6809	0.6875	0.0914	281.21	0.1486	2.13	1/982	1/7748
SNV	Breast	PCLO_D4729N_1	HLA-B35:02	NPFVKVYLL	0.836	0.7607	0.1074	34.77	0.0568	6.46	1/982	1/7748
SNV	Breast	PKP3_R663C_8	HLA-A02:01	ILNPLLDCV	0.9949	0.6065	0.2851	25.97	0.2395	49.71	1/982	1/7748
SNV	Breast	PMS1_C102Y_1	HLA-A02:01	YIAEVLITT	0.9887	0.6549	0.1811	8.76	0.148	12.06	1/982	1/7748
SNV	Breast	PMS1_C102Y_9	HLA-B18:01	GEALGSICY	0.9306	0.8293	0.0975	55.62	0.1232	12.06	1/982	1/7748
SNV	Breast	PTPN14_Q516H_1	HLA-C07:01	HRNPKNNVV	0.9213	0.686	0.2061	28.95	0.0471	17.22	1/982	1/7748
SNV	Breast	RASD2_S75F_9	HLA-B18:01	YQLDILDTF	0.8498	0.949	0.1321	372.64	0.241	5.92	1/982	1/7748
SNV	Breast	RBM24_P124L_2	HLA-A02:01	YLQAFVQPGV	0.9972	0.8099	0.1218	159.75	0.4689	5.96	1/982	1/7748
SNV	Breast	RCBTB1_E489Q_9	HLA-C04:01	RYDAEDLEQF	0.9999	0.8323	0.0925	392.84	0.1371	44.88	1/982	1/7748
SNV	Breast	RECQL5_F405L_9	HLA-A02:01	MAFDALVTL	0.9492	0.6512	0.1465	326.02	0.5861	22.53	1/982	1/7748
SNV	Breast	RECQL5_F405L_10	HLA-A02:01	IMAFDALVTL	0.9799	0.6362	0.2375	17.49	0.206	22.53	1/982	1/7748
SNV	Breast	RECQL5_F405L_9	HLA-B35:02	MAFDALVTL	0.9851	0.9866	0.0129	8.5	0.031	22.53	1/982	1/7748
SNV	Breast	RECQL5_F405L_9	HLA-C07:01	MAFDALVTL	0.9416	0.8045	0.452	230.63	0.1212	22.53	1/982	1/7748
SNV	Breast	RECQL5_F405L_8	HLA-C04:01	AFDALVTL	1	0.9598	0.0121	31.54	0.0457	22.53	1/982	1/7748
SNV	Breast	RELB_S289F_7	HLA-A02:01	RMDPVLFEPV	0.9973	0.6659	0.488	267.68	0.5542	46.2	1/982	1/7748
SNV	Breast	RELB_S289F_8	HLA-C07:01	RRMDPVLF	0.9999	0.6823	0.2377	132.38	0.1005	46.2	1/982	1/7748
SNV	Breast	RELB_S289F_9	HLA-C07:01	MRRMDPVLF	0.9915	0.689	0.1086	25.09	0.0435	46.2	1/982	1/7748
SNV	Breast	RNF115_L91V_9	HLA-C04:01	FFQDFRPFV	0.9885	0.8068	0.2407	136.43	0.0821	37.24	1/982	1/7748
SNV	Breast	ROBO2_G635A_3	HLA-A02:01	ELADVLVRL	0.979	0.7671	0.5055	7.68	0.1371	6.55	1/982	1/7748
SNV	Breast	RUFY3_E360K_6	HLA-C07:01	LRLDVKKEL	0.9976	0.8076	0.0705	32.43	0.0499	17.41	1/982	1/7748
SNV	Breast	SALL4_Q578E_2	HLA-B18:01	CESSLKMHY	0.9985	0.8527	0.0255	376.58	0.2417	1.46	1/982	1/7748
SNV	Breast	SAMD9L_L183V_9	HLA-C07:01	HRYIEHYTV	0.9959	0.7045	0.0851	26.33	0.0447	115.58	1/982	1/7748
SNV	Breast	SFSWAP_G386E_10	HLA-A24:02	TYCLAPPPPEI	0.9994	0.5486	0.8366	431.52	0.6713	23.91	1/982	1/7748
SNV	Breast	SFSWAP_G386E_8	HLA-A02:01	CLAPPPPEI	0.9948	0.8936	0.5286	20.15	0.218	23.91	1/982	1/7748
SNV	Breast	SFSWAP_G386E_2	HLA-B18:01	PEIDVTTY	0.927	0.9534	0.2684	212.07	0.2023	23.91	1/982	1/7748
SNV	Breast	SFSWAP_G386E_2	HLA-B18:01	PEIDVTTYY	0.8173	0.9402	0.1321	8.98	0.0598	23.91	1/982	1/7748
SNV	Breast	SLC44A4_R583G_4	HLA-A02:01	LLMGNIVRV	0.9984	0.7349	0.0211	1.11	0.008	361.82	1/982	1/7748
SNV	Breast	SLC44A4_R583G_4	HLA-A02:01	LLMGNIVRVV	0.9964	0.6754	0.3398	21.52	0.2236	361.82	1/982	1/7748
SNV	Breast	SMG1_S140L_8	HLA-C07:01	MRKSQERLM	0.9914	0.6597	0.0975	419.22	0.1622	36.64	1/982	1/7748
SNV	Breast	SPTBN2_D1639N_4	HLA-A02:01	ALANYAQTI	0.9939	0.6543	0.49	10.67	0.1638	33.25	1/982	1/7748
SNV	Breast	STARD3_S47F_2	HLA-C04:01	IFDVRRTF	0.9998	0.5911	0.0471	113.22	0.077	46.64	1/982	1/7748
SNV	Breast	STT3B_D417N_8	HLA-A24:02	TWVSFFFNL	0.8903	0.5715	0.0315	52.8	0.372	153.87	1/982	1/7748
SNV	Breast	SUCO_S1045L_8	HLA-C04:01	QFDGDYILKL	0.9994	0.862	0.1739	95.22	0.0729	132.72	1/982	1/7748
SNV	Breast	SYT11_S148F_1	HLA-B35:02	FPSSPEEDVM	0.94	0.9867	0.0091	41.31	0.0624	17.92	1/982	1/7748
SNV	Breast	TADA2A_R280Q_6	HLA-B18:01	LEFELQREI	0.9372	0.8988	0.1787	171.32	0.1897	16.9	1/982	1/7748
SNV	Breast	TANC1_E752Q_1	HLA-C07:01	QRALPILNV	0.9882	0.7615	0.2581	256.25	0.1252	15.74	1/982	1/7748
SNV	Breast	TF_L165V_1	HLA-B18:01	VEKAVANFF	0.982	0.8494	0.0503	11.89	0.0669	2.72	1/982	1/7748
SNV	Breast	TMCO3_L464V_1	HLA-A24:02	VFSLAAVFL	0.7351	0.5397	0.3914	356.21	0.6375	34.25	1/982	1/7748
SNV	Breast	TMCO3_L464V_7	HLA-A02:01	VLIGQIVFSL	0.9905	0.6397	0.1811	41.95	0.2847	34.25	1/982	1/7748
SNV	Breast	TSPAN15_F123L_8	HLA-C07:01	FRNQTIDLL	0.9968	0.6392	0.0425	10.7	0.0207	136.95	1/982	1/7748
SNV	Breast	TUBGCP2_E311Q_7	HLA-A02:01	ILVSQLQQL	0.9864	0.6552	0.2478	9.17	0.1517	45.66	1/982	1/7748
SNV	Breast	TXK_I430M_8	HLA-A24:02	SFGAKFPMKW	0.9924	0.8211	0.6533	156.09	0.5149	1.4	1/982	1/7748
SNV	Breast	ULK4_Q459E_5	HLA-A02:01	FLKDEDWNDFL	0.9935	0.6812	1.1725	481.97	0.6674	5.87	1/982	1/7748
SNV	Breast	USP34_E230Q_1	HLA-A24:02	QYGTPETLPF	0.9959	0.5518	0.2351	5.84	0.162	31.51	1/982	1/7748
SNV	Breast	USP34_E230Q_2	HLA-A02:01	FQYGTPETL	0.9762	0.7564	0.3449	39.84	0.2797	31.51	1/982	1/7748
SNV	Breast	WASF1_D84N_1	HLA-B35:02	NPKEEELSL	0.5949	0.8992	0.1285	23.2	0.047	3.03	1/982	1/7748
SNV	Breast	WDR12_E52Q_8	HLA-B18:01	NEFHKHVQF	0.9982	0.6984	0.0039	1.4	0.0039	11.26	1/982	1/7748
SNV	Breast	WDR55_S93F_2	HLA-C04:01	FFEDGQKL	0.9999	0.7259	0.0155	105.14	0.0752	19.67	1/982	1/7748
SNV	Breast	WDR55_S93F_2	HLA-C04:01	FFEDGQKLI	0.9987	0.5059	0.0194	11.58	0.0239	19.67	1/982	1/7748
SNV	Breast	ZFHX4_T3077M_3	HLA-A02:01	GLMVQQPGM	0.8819	0.6417	0.6625	218.6	0.5213	1.94	1/982	1/7748
SNV	Breast	ZNF462_E1084Q_8	HLA-A02:01	ALSQLSFQV	0.997	0.538	0.0126	4.04	0.0852	3.09	1/982	1/7748
SNV	Breast	ZNF565_S84L_9	HLA-B18:01	LENFGHLAL	0.9688	0.7046	0.1471	27.85	0.0953	6.2	1/982	1/7748
SNV	Breast	MYO6_H126Y_1	HLA-A68:02	YVFAIADKA	0.9861	0.5525	0.071	45.53	0.1439	28.66	1/982	1/7748
SNV	Breast	AFAP1L2_V311L_9	HLA-C03:03	SASEYGSSL	0.9992	0.9942	0.0057	1.93	0.0157	6.17	1/982	1/7748
SNV	Breast	AFAP1L2_V311L_3	HLA-C03:03	SSLDGHPEV	0.9917	0.9962	0.1821	134.62	0.3071	6.17	1/982	1/7748
SNV	Breast	AHNAK_D1242N_8	HLA-A02:01	KMDIDAPNV	0.9945	0.5591	0.3735	5.73	0.1142	126.65	1/982	1/7748
SNV	Breast	ANO6_M630I_7	HLA-A02:01	VLLPWIINL	0.9906	0.5085	0.1073	1.37	0.0162	21.15	1/982	1/7748
SNV	Breast	CD109_S1306L_2	HLA-C03:03	FLGPGRSGM	0.9399	0.9816	0.6309	494.21	0.5008	66.9	1/982	1/7748
SNV	Breast	COL5A3_R525G_8	HLA-B07:02	GPHGPPGGV	0.9978	0.657	0.136	180.04	0.312	22.07	1/982	1/7748
SNV	Breast	CPT1C_F762L_9	HLA-A02:01	ALLDVASLL	0.9945	0.6015	0.0914	2.09	0.0474	7.42	1/982	1/7748
SNV	Breast	CYB561D2_S186F_1	HLA-A02:01	FVTGAAWYL	0.9744	0.6792	0.1073	59.14	0.324	30.58	1/982	1/7748
SNV	Breast	EPHB3_D820N_1	HLA-C03:03	NVWSYGIVM	0.9907	0.9384	0.5685	458.04	0.4884	43.19	1/982	1/7748
SNV	Breast	GUCY1A2_R436Q_8	HLA-A02:01	KLDELMGQGL	0.9741	0.7356	0.7688	128.83	0.4321	1.05	1/982	1/7748
SNV	Breast	HIST1H2BC_V45L_5	HLA-A02:01	YVYKLLKQV	0.9628	0.5832	0.2054	133.48	0.4381	3.73	1/982	1/7748
SNV	Breast	INPP5A_L185F_2	HLA-C07:02	HFFHDASNL	0.7119	0.9582	0.3785	446.05	0.3806	24.33	1/982	1/7748
SNV	Breast	LIPE_E673K_8	HLA-A02:01	YLKSWAQKL	0.9583	0.5994	0.2736	483.25	0.6679	3.04	1/982	1/7748
SNV	Breast	MPP5_I183F_9	HLA-C03:03	KASPPFPLF	0.988	0.9859	0.0884	20.67	0.1409	9.86	1/982	1/7748
SNV	Breast	MPP5_I183F_9	HLA-C07:02	KASPPFPLF	0.9932	0.9423	0.2519	238.03	0.2904	9.86	1/982	1/7748
SNV	Breast	OGT_D430N_1	HLA-C03:03	NAHSNLASI	0.9963	0.9856	0.1061	166.74	0.3364	50.96	1/982	1/7748
SNV	Breast	PIK3CA_E81K_1	HLA-C07:02	KFFDETRRL	0.7303	0.9447	0.2626	13.38	0.0604	9.6	2/982	3/7748
SNV	Breast	PTPDC1_K733N_7	HLA-C07:02	VYNTLKNIF	0.56	0.895	0.2181	127.68	0.2199	3.27	1/982	1/7748
SNV	Breast	SDK1_A2002V_9	HLA-C03:03	TAVSAQVEV	0.9941	0.9872	0.1821	120.7	0.294	7.81	1/982	1/7748
SNV	Breast	SLC5A3_H294Y_3	HLA-C03:03	IAYAKGSTL	0.9998	0.9873	0.0074	1.2	0.0042	8.66	1/982	1/7748
SNV	Breast	SLC5A3_H294Y_3	HLA-C03:03	IAYAKGSTLM	0.9995	0.9854	0.3997	137.33	0.3098	8.66	1/982	1/7748
SNV	Breast	SLC5A3_H294Y_3	HLA-C07:02	IAYAKGSTL	0.8934	0.9713	0.6388	98.56	0.1928	8.66	1/982	1/7748
SNV	Breast	SNRNP40_E23Q_6	HLA-C07:02	KRQRHQLLL	0.9798	0.9132	0.106	81.9	0.1748	32.96	1/982	1/7748
SNV	Breast	SNRNP40_E23V_6	HLA-C07:02	KRQRHVLLL	0.9813	0.9445	0.0301	21.94	0.0805	32.96	1/982	1/7748
SNV	Breast	URB2_I884L_9	HLA-A02:01	SLVKSDFPL	0.9619	0.7171	0.1381	68	0.3419	11.25	1/982	1/7748
SNV	Breast	URB2_I884L_9	HLA-A02:01	SLVKSDFPLQL	0.9015	0.7364	0.9795	56.2	0.3174	11.25	1/982	1/7748
SNV	Breast	URB2_I884L_7	HLA-C07:02	VKSDFPLQL	0.8484	0.9774	0.2351	352.49	0.3458	11.25	1/982	1/7748
SNV	Breast	ZNF500_S140L_6	HLA-C07:02	HRQRGLELL	0.8941	0.9373	0.1325	197.83	0.2686	9.03	1/982	1/7748
SNV	Breast	ZPR1_E116K_9	HLA-A11:01	RALEDMNRK	0.9857	0.5738	0.3766	39.94	0.1982	12.08	1/982	1/7748
SNV	Breast	ARID4B_L1236V_10	HLA-A68:02	MTSAERITIV	0.9956	0.5417	0.5138	364.32	0.4117	61.01	1/982	1/7748
SNV	Breast	ATAD3A_R466W_10	HLA-B58:01	FVDEADAFLW	0.9974	0.966	0.2324	151.57	0.4517	29.12	1/982	1/7748
SNV	Breast	AVPR2_R149C_2	HLA-B58:01	YCHGSGAHW	0.9761	0.9923	0.1083	67.22	0.3406	1.25	1/982	1/7748
SNV	Breast	AVPR2_R149C_4	HLA-B58:01	LAYCHGSGAHW	0.9995	0.9827	0.1446	74.22	0.3536	1.25	1/982	1/7748
SNV	Breast	CCSER1_S192Y_10	HLA-B58:01	KSFSSHYKFY	0.9911	0.5527	0.4679	117.22	0.4149	1.5	1/982	1/7748
SNV	Breast	CDCA8_E237K_7	HLA-B35:03	VPVGGGKSL	0.8997	0.895	0.0401	11.7	0.0376	46.73	1/982	1/7748
SNV	Breast	COL12A1_E38V_2	HLA-B58:01	DVNTVHMSW	0.8698	0.9381	0.336	24.89	0.224	68.36	1/982	1/7748
SNV	Breast	COL12A1_E38V_3	HLA-B58:01	IDVNTVHMSW	0.9975	0.9515	0.649	60.08	0.3259	68.36	1/982	1/7748
SNV	Breast	COL12A1_E38V_4	HLA-C04:01	IIDVNTVHM	0.9999	0.5679	0.0536	290.53	0.1186	68.36	1/982	1/7748
SNV	Breast	DLGAP4_R116H_5	HLA-B35:03	LPIHHDGFSTL	0.9988	0.862	0.062	386.71	0.164	42.08	1/982	1/7748
SNV	Breast	PI4KA_A1192S_8	HLA-B35:03	HPQHYTQSM	0.9903	0.738	0.0158	12.74	0.0392	30.14	1/982	1/7748
SNV	Breast	PI4KA_Q1191H_7	HLA-B35:03	HPQHYTHAM	0.9948	0.7247	0.005	3.42	0.0177	30.14	1/982	1/7748
SNV	Breast	PYGB_M148I_5	HLA-A02:01	FLDSIATL	0.9971	0.5335	0.9594	17.99	0.2084	117.77	1/982	1/7748
SNV	Breast	PYGB_M148I_5	HLA-A02:01	FLDSIATLGL	0.9924	0.6757	0.2489	18.46	0.2106	117.77	1/982	1/7748
SNV	Breast	URB2_A1169T_9	HLA-A02:01	ILLELPALT	0.985	0.7302	0.5258	37.65	0.2742	16.03	1/982	1/7748
SNV	Breast	ZNF292_R2275L_6	HLA-B58:01	RSNLLLHIF	0.9979	0.7174	0.0545	9.59	0.1382	14.96	1/982	1/7748
SNV	Breast	ZNF292_R2275L_7	HLA-C07:01	TRSNLLLHI	0.999	0.5821	0.0949	302.58	0.1382	14.96	1/982	1/7748
SNV	Breast	ZNF732_L545V_6	HLA-C07:01	RRSRVVNKY	0.9887	0.5216	0.0925	393.93	0.1578	1.84	1/982	1/7748
SNV	Breast	ZNF732_S374F_6	HLA-B58:01	KAFRQFATL	0.99	0.9687	0.0927	238.41	0.52	1.84	1/982	1/7748
SNV	Breast	ARID3B_R129H_1	HLA-C03:04	HQDPRVAPM	0.998	0.9877	0.3025	480.23	0.4961	4.26	1/982	1/7748
SNV	Breast	ATP11C_V1010I_5	HLA-C03:04	LVFTITLKL	0.9915	0.9861	0.3531	179.81	0.3468	8.36	1/982	1/7748
SNV	Breast	ATP11C_V1010I_3	HLA-C03:04	FTITLKLAL	0.9995	0.9756	0.0536	17.83	0.1286	8.36	1/982	1/7748
SNV	Breast	CUL9_M1067V_1	HLA-B15:10	VHKDYAVVL	0.855	0.6135	0.0261	140.5	0.0138	14.92	1/982	1/7748
SNV	Breast	NLGN2_T613M_7	HLA-C03:04	HLHNLHMEL	0.9681	0.9797	0.3531	215.62	0.3716	25.19	1/982	1/7748
SNV	Breast	ZNF559_A20D_1	HLA-B53:01	DVDFTQEEW	0.9034	0.8529	0.5553	23.59	0.0905	1.45	1/982	1/7748
SNV	Breast	ZNF611_L164V_3	HLA-B15:10	SHVPELHIF	0.9718	0.5497	0.0491	295.24	0.0266	3.81	1/982	1/7748
SNV	Breast	ZNF611_L164V_6	HLA-C06:02	SFYSHVPEL	0.8254	0.9945	0.1144	66.84	0.0778	3.81	1/982	1/7748
SNV	Breast	ZNF611_L164V_6	HLA-C03:04	SFYSHVPEL	0.9149	0.9954	1.0044	239.77	0.3862	3.81	1/982	1/7748
SNV	Breast	ZSWIM8_A1245V_6	HLA-C06:02	FYFELVKTV	0.5837	0.9959	0.0491	312.41	0.1617	75.75	1/982	1/7748
SNV	Breast	PPFIBP1_R597T_2	HLA-C12:02	LTRSQSTTF	0.9237	0.9626	0.1851	196.44	0.2776	19.83	1/982	1/7748
SNV	Breast	TNFRSF19_P327T_7	HLA-C14:02	SFCDSYTEL	0.6943	0.9733	0.051	16.4	0.1885	6.73	1/982	1/7748
SNV	Breast	DLD_K320N_5	HLA-B35:03	RPFTNNLGL	0.7899	0.8048	0.2281	381.42	0.1634	51.38	1/982	1/7748
SNV	Breast	DLD_K320N_7	HLA-C07:01	GRRPFTNNL	0.9883	0.5486	0.0705	66.23	0.0739	51.38	1/982	1/7748
SNV	Breast	EXPH5_T266N_3	HLA-B18:01	NENSNMSIY	0.9946	0.8562	0.0519	4.52	0.0337	3.63	1/982	1/7748
SNV	Breast	FGD4_P50H_1	HLA-C07:01	HRTPGRHGL	0.9955	0.5911	0.0786	24.7	0.0431	9.42	1/982	1/7748
SNV	Breast	IGBP1_A122S_1	HLA-B18:01	SEFELPKTM	0.9964	0.9739	0.0159	1.55	0.005	120.95	1/982	1/7748
SNV	Breast	NCK2_I6N_9	HLA-B18:01	EEVNVIAKW	0.9969	0.8438	0.1181	10.65	0.0642	66.13	1/982	1/7748
SNV	Breast	TGFBR3_A170G_5	HLA-B18:01	KEYGGVTSF	0.9904	0.9744	0.01	1.98	0.0078	60.01	1/982	1/7748
SNV	Breast	TTC13_Q312E_2	HLA-B18:01	KEKVDFIDAY	0.8559	0.7953	0.3484	291.9	0.2242	11.18	1/982	1/7748
SNV	Breast	FBLN5_I365V_5	HLA-B35:01	VPADVFQM	0.9608	0.7344	0.6351	287.89	0.4194	30.29	1/982	1/7748
SNV	Breast	NPHP4_P534L_9	HLA-B35:01	LPHGSQASL	0.9866	0.8507	0.0771	10.13	0.1294	2.74	1/982	1/7748
SNV	Breast	STAG2_V628A_2	HLA-B35:01	DALEACSKTY	0.97	0.8645	0.8325	129.72	0.3341	33.42	1/982	1/7748
SNV	Breast	TBC1D19_M94I_3	HLA-A24:02	VYIRKAQGSW	0.9564	0.8648	0.4934	122.07	0.4806	6.25	1/982	1/7748
SNV	Breast	TBC1D19_M94I_9	HLA-C15:02	HLKEPLVYI	0.965	0.9489	0.8217	112.28	0.4148	6.25	1/982	1/7748
SNV	Breast	FYB_D632V_9	HLA-C04:01	IYDGIEEEV	0.9986	0.8232	0.0076	19.23	0.0356	19.68	1/982	1/7748
SNV	Breast	MDN1_Y454F_1	HLA-C07:02	FRPLNSHATL	0.9951	0.8772	0.418	435.81	0.3771	17.44	1/982	1/7748
SNV	Breast	PIK3R4_N586S_3	HLA-A02:01	FLSDKNDWHL	0.994	0.5145	0.1848	2.44	0.0545	35.2	1/982	1/7748
SNV	Breast	PNPLA4_K230E_8	HLA-C07:02	LFPPSKREM	0.5093	0.989	0.2455	485.65	0.3931	7.62	1/982	1/7748
SNV	Breast	TNN_A1043T_8	HLA-C07:02	TYPVSLVTF	0.7434	0.9664	0.1325	188.4	0.2629	3.44	1/982	1/7748
SNV	Breast	TUBGCP4_R313S_8	HLA-C07:02	TFAAELHSL	0.659	0.9771	0.3874	440	0.3786	8.77	1/982	1/7748
SNV	Breast	CREBL2_R58L_9	HLA-C08:02	YLEELVSSL	0.9997	0.9827	0.0644	6.94	0.0154	72.96	1/982	1/7748
SNV	Breast	CREBL2_R58L_9	HLA-C12:03	YLEELVSSL	0.9958	0.9899	0.6121	59.52	0.3986	72.96	1/982	1/7748
SNV	Breast	DNAH1_N2137K_3	HLA-B18:01	MEKEQLTLL	0.9513	0.8217	0.1502	56.17	0.1236	1.84	1/982	1/7748
SNV	Breast	DNAH1_N2137K_3	HLA-B18:01	MEKEQLTLLF	0.9925	0.8265	0.2509	356.8	0.238	1.84	1/982	1/7748
SNV	Breast	SF3B1_K700E_5	HLA-B18:01	DEQQEVRTI	0.9603	0.9335	0.2306	325.91	0.2318	130.67	1/982	1/7748
SNV	Breast	SF3B1_K700E_2	HLA-B18:01	QEVRTISAL	0.8976	0.9059	0.0717	208.61	0.2011	130.67	1/982	1/7748
SNV	Breast	FRRS1_R490K_4	HLA-A68:02	TAAKIIAVA	0.9893	0.5473	0.1566	83.56	0.2084	7.51	1/982	1/7748
SNV	Breast	FRRS1_R490K_8	HLA-C12:03	WSMGTAAKI	0.7029	0.9504	0.7049	340.57	0.9239	7.51	1/982	1/7748
SNV	Breast	FRRS1_R490K_5	HLA-C12:03	GTAAKIIAV	0.984	0.9623	1.0691	120.28	0.5715	7.51	1/982	1/7748
SNV	Breast	FRRS1_R490K_1	HLA-C12:03	KIIAVAAMF	0.7434	0.9873	1.7212	384.57	0.9697	7.51	1/982	1/7748
SNV	Breast	IL10RA_R97W_6	HLA-A68:02	HSNGYWARV	0.9901	0.6998	0.2193	368.57	0.4139	6.43	1/982	1/7748
SNV	Breast	MBTD1_I476T_5	HLA-A68:02	ETGSTAAPV	0.9945	0.5161	0.0799	24.96	0.0999	20.07	1/982	1/7748
SNV	Breast	MBTD1_I476T_2	HLA-C12:03	STAAPVKLF	0.6376	0.976	0.222	57.79	0.3935	20.07	1/982	1/7748
SNV	Breast	OPN3_A219T_2	HLA-C12:03	ITHCYGHIL	0.9256	0.9528	0.1244	324.85	0.906	11.18	1/982	1/7748
SNV	Breast	PLEKHG2_I124F_8	HLA-C12:03	YVRDLRSF	0.9882	0.9711	1.9352	165.22	0.6669	8.09	1/982	1/7748
SNV	Breast	PLEKHG2_I124F_8	HLA-C12:03	YVRDLRSFV	0.8105	0.9794	0.963	43.53	0.3442	8.09	1/982	1/7748
SNV	Breast	PLEKHG2_I124F_10	HLA-C12:03	RAYVRDLRSF	0.9955	0.9874	1.8644	445.48	1.0274	8.09	1/982	1/7748
SNV	Breast	PNPLA8_I253V_8	HLA-B27:05	LRSPDPGVLAY	0.9999	0.9453	0.0118	316.3	0.5416	21.96	1/982	1/7748
SNV	Breast	PNPLA8_I253V_7	HLA-C12:03	RSPDPGVLAY	0.9017	0.983	0.3334	322.69	0.9035	21.96	1/982	1/7748
SNV	Breast	PRPF4B_I860V_9	HLA-B27:05	SRFYRAPEV	0.9999	0.8753	0.2409	24.55	0.2653	38.13	1/982	1/7748
SNV	Breast	PRPF4B_I860V_6	HLA-B27:05	YRAPEVIIGK	0.9996	0.8366	0.2732	3.28	0.1049	38.13	1/982	1/7748
SNV	Breast	PRPF4B_I860V_3	HLA-B18:01	PEVIIGKSY	0.8045	0.6866	0.145	90.57	0.1464	38.13	1/982	1/7748
SNV	Breast	USP51_K295Q_5	HLA-C12:03	YVYDQDIEQI	0.9943	0.9703	0.998	394.84	0.9796	2.9	1/982	1/7748
SNV	Breast	WDR76_G588V_4	HLA-A68:02	HSFVGEYLV	0.9916	0.8122	0.0386	47.32	0.147	9.75	1/982	1/7748
SNV	Breast	WDR76_G588V_2	HLA-A68:02	FVGEYLVSV	0.9957	0.876	0.034	42.19	0.1377	9.75	1/982	1/7748
SNV	Breast	WDR76_G588V_7	HLA-B27:05	KRVHSFVGEY	0.9999	0.8972	0.0346	13.25	0.2169	9.75	1/982	1/7748
SNV	Breast	WDR76_G588V_6	HLA-C12:03	RVHSFVGEY	0.6837	0.9791	0.2699	27.35	0.2587	9.75	1/982	1/7748
SNV	Breast	WDR76_G588V_2	HLA-C12:03	FVGEYLVSV	0.9719	0.9853	0.4773	62.24	0.4086	9.75	1/982	1/7748
SNV	Breast	NTRK1_L96V_6	HLA-B41:01	GELRNVTIV	0.5045	0.975	0.0943	11.52	0.0794	1.11	1/982	1/7748
SNV	Breast	CD9_L96I_7	HLA-A02:01	GLFFGFILV	0.9906	0.6694	0.0408	4.19	0.0904	560.4	1/982	1/7748
SNV	Breast	FAM200B_K412R_5	HLA-B08:01	FLIERKSHL	0.9984	0.5704	0.0019	3.44	0.0137	16.91	1/982	1/7748
SNV	Breast	FAM200B_K412R_5	HLA-C07:02	FLIERKSHL	0.5798	0.8898	0.5982	204.72	0.2726	16.91	1/982	1/7748
SNV	Breast	KLHL12_L471P_3	HLA-A02:01	ALPNDHIYV	0.9937	0.6604	0.3795	4.66	0.099	56.65	1/982	1/7748
SNV	Breast	KLHL12_L471P_3	HLA-A02:01	ALPNDHIYVV	0.9908	0.6073	0.5055	8.04	0.1409	56.65	1/982	1/7748
SNV	Breast	KLHL12_L471P_2	HLA-B08:01	LPNDHIYVV	0.7086	0.5026	0.4539	367.96	0.2941	56.65	1/982	1/7748
SNV	Breast	LCA5_P307Q_1	HLA-B08:01	QNKEKELAL	0.9977	0.6797	0.0435	42.23	0.1054	3.64	1/982	1/7748
SNV	Breast	MTF1_H82L_10	HLA-A02:01	FLVGGEEGFL	0.9853	0.7501	0.4709	62.73	0.3316	27.09	1/982	1/7748
SNV	Breast	MTF1_H82L_10	HLA-A02:01	FLVGGEEGFLL	0.998	0.7284	0.7194	103.07	0.3954	27.09	1/982	1/7748
SNV	Breast	NBPF12_E125Q_4	HLA-A02:01	SLNQHLQAL	0.9726	0.6393	0.3157	12.47	0.1764	5.81	1/982	2/7748
SNV	Breast	NBPF12_E125Q_4	HLA-B08:01	SLNQHLQAL	0.9848	0.5575	0.0109	8.36	0.0345	5.81	1/982	1/7748
SNV	Breast	RAPGEF2_S698L_2	HLA-A02:01	CLDEDAQEL	0.9745	0.7259	0.6927	50.17	0.3028	5.76	1/982	1/7748
SNV	Breast	SYDE1_H588R_2	HLA-C07:02	KRHIEVLHY	0.8782	0.8847	0.0379	314.84	0.3292	11.24	1/982	1/7748
SNV	Breast	SYDE1_H588R_1	HLA-C07:02	RHIEVLHYL	0.9781	0.9472	0.0676	20.46	0.0777	11.24	1/982	1/7748
SNV	Breast	SYDE1_H588R_1	HLA-C07:01	RHIEVLHYL	0.9986	0.6648	0.073	322.26	0.1431	11.24	1/982	1/7748
SNV	Breast	SYDE1_R537C_7	HLA-A02:01	LLLDHLCLV	0.9983	0.5999	0.0031	5.64	0.113	11.24	1/982	2/7748
SNV	Breast	ZNF12_D229N_6	HLA-C07:02	KAFQKNTVF	0.9569	0.9521	0.2737	313.98	0.3288	24.55	1/982	1/7748
SNV	Breast	DNMT1_D859N_5	HLA-B44:03	LEGDNGKTY	0.9854	0.8104	0.0786	3.1	0.0624	43.98	1/982	1/7748
SNV	Breast	DNMT1_D859N_5	HLA-B44:03	LEGDNGKTYF	0.9901	0.7971	0.1128	203.86	0.3385	43.98	1/982	1/7748
SNV	Breast	DNMT1_D859N_5	HLA-B18:01	LEGDNGKTY	0.9807	0.8092	0.0644	15.67	0.0749	43.98	1/982	1/7748
SNV	Breast	ESYT1_R806W_3	HLA-B18:01	MEWAEDLPL	0.9262	0.8874	0.1471	175.47	0.1911	143.27	1/982	1/7748
SNV	Breast	GEMIN5_P292T_2	HLA-C15:02	WTSNQPTQL	0.9926	0.8934	0.2893	51.36	0.2773	14.75	1/982	1/7748
SNV	Breast	GEMIN5_P292T_1	HLA-C15:02	TSNQPTQLV	0.9985	0.8964	0.0956	67.57	0.3227	14.75	1/982	1/7748
SNV	Breast	OSR2_Q47E_2	HLA-B44:03	VETMHMNHW	0.9993	0.9639	0.0229	2.37	0.0471	9.29	1/982	1/7748
SNV	Breast	TSC1_Y948F_3	HLA-C07:01	SRFEAQKRI	0.9939	0.6984	0.1144	43.66	0.0606	15.82	1/982	1/7748
SNV	Breast	ACAA2_V343M_2	HLA-B39:10	NMNGGAIAL	0.7622	0.8963	0.512	294.46	0.4218	53.9	1/982	1/7748
SNV	Breast	ACAA2_V343M_4	HLA-C16:01	KTNMNGGAI	0.6406	0.954	1.5401	460.99	0.8176	53.9	1/982	1/7748
SNV	Breast	ACAA2_V343M_2	HLA-C16:01	NMNGGAIAL	0.8669	0.9723	0.9879	316.45	0.7087	53.9	1/982	1/7748
SNV	Breast	ACAA2_V343M_2	HLA-C12:03	NMNGGAIAL	0.9888	0.962	0.6062	350.05	0.9342	53.9	1/982	1/7748
SNV	Breast	ADCK2_Q521H_7	HLA-C12:03	VVMGQGHRV	0.6488	0.9816	1.473	82.24	0.4737	88.7	1/982	1/7748
SNV	Breast	BRD4_M1073I_4	HLA-B39:10	SPQISQFQSL	0.5273	0.9408	0.1934	38.7	0.1897	39.99	1/982	1/7748
SNV	Breast	CCDC69_V291I_5	HLA-B39:10	TPTEISFL	0.7888	0.8162	1.1736	173.38	0.3457	10.36	1/982	1/7748
SNV	Breast	CCDC69_V291I_8	HLA-B39:10	APVTPTEISF	0.7129	0.9341	0.4293	273.2	0.4087	10.36	1/982	1/7748
SNV	Breast	CCDC69_V291I_9	HLA-C12:03	LAPVTPTEI	0.9825	0.9891	0.4036	247.27	0.8122	10.36	1/982	1/7748
SNV	Breast	CCNH_E141Q_6	HLA-B44:03	QEKALQQIL	0.9808	0.9488	0.1802	81.72	0.2684	11.42	1/982	1/7748
SNV	Breast	CCNH_E141Q_6	HLA-B44:03	QEKALQQILEY	0.9991	0.9389	0.1825	382.5	0.3879	11.42	1/982	1/7748
SNV	Breast	CCNH_E141Q_4	HLA-C16:01	KALQQILEY	0.6098	0.9728	0.0639	65.42	0.3386	11.42	1/982	1/7748
SNV	Breast	CCNH_E141Q_4	HLA-C12:03	KALQQILEY	0.5111	0.9853	0.1311	20.49	0.2133	11.42	1/982	1/7748
SNV	Breast	CYP8B1_M81R_3	HLA-C16:01	FVRDPLSF	0.9731	0.9421	0.9025	367.65	0.7513	1.23	1/982	1/7748
SNV	Breast	CYP8B1_M81R_3	HLA-C12:03	FVRDPLSF	0.9908	0.9502	1.0865	125.75	0.5834	1.23	1/982	1/7748
SNV	Breast	CYP8B1_M81R_5	HLA-C12:03	FTFVRDPLSF	0.9994	0.9267	0.8011	302.03	0.8806	1.23	1/982	1/7748
SNV	Breast	DOCK4_S1435C_7	HLA-B44:03	KENEFKCLW	0.9994	0.9005	0.0085	1.66	0.0291	9.92	1/982	1/7748
SNV	Breast	ELF2_A415V_5	HLA-C12:03	QSVNVGAPL	0.9732	0.9528	0.3446	334.52	0.9171	9.54	1/982	1/7748
SNV	Breast	EOGT_P483S_9	HLA-B39:10	FPQDKGHHSTL	0.9683	0.9935	0.1467	9.38	0.0891	9.12	1/982	1/7748
SNV	Breast	GRHL1_G390E_2	HLA-B44:03	KELPLNIQV	0.8516	0.9229	0.1565	86.27	0.2725	16.59	1/982	1/7748
SNV	Breast	GRHL1_G390E_8	HLA-C16:01	SSQKGVKEL	0.8786	0.9891	0.1548	83.17	0.3874	16.59	1/982	1/7748
SNV	Breast	GUCY1A3_I371M_10	HLA-A29:02	RVMDLKGQMMY	0.9997	0.5651	0.3538	13.25	0.1648	48.4	1/982	1/7748
SNV	Breast	KCND3_Q414H_7	HLA-A31:01	RIYHQNHR	0.9964	0.5479	1.5993	469.4	0.4169	3.92	1/982	1/7748
SNV	Breast	MUT_T101A_2	HLA-A31:01	YAFRPWTIR	0.9685	0.7117	0.0929	86.41	0.1933	24.55	1/982	1/7748
SNV	Breast	MUT_T101A_2	HLA-C16:01	YAFRPWTI	0.9883	0.9849	0.6158	467.4	0.822	24.55	1/982	1/7748
SNV	Breast	MUT_T101A_2	HLA-C12:03	YAFRPWTI	0.9743	0.9865	0.7321	253.98	0.8213	24.55	1/982	1/7748
SNV	Breast	NAPA_D183H_4	HLA-C16:01	KAIHIYEQV	0.9487	0.9819	0.257	340.58	0.7296	57.45	1/982	1/7748
SNV	Breast	NAPA_D183H_4	HLA-C12:03	KAIHIYEQV	0.8918	0.987	0.1274	191.78	0.7169	57.45	1/982	1/7748
SNV	Breast	NT5DC3_V173L_7	HLA-A31:01	YIQLGTLYR	0.9461	0.5476	0.1219	244.22	0.321	3.26	1/982	1/7748
SNV	Breast	NT5DC3_V173L_8	HLA-A31:01	HYIQLGTLYR	0.9878	0.6664	0.3791	398.39	0.391	3.26	1/982	1/7748
SNV	Breast	PEX11G_S93Y_10	HLA-B44:03	EEDAFVRCVY	0.9993	0.8184	0.1236	3.81	0.0747	12.4	1/982	1/7748
SNV	Breast	PEX11G_S93Y_11	HLA-B44:03	QEEDAFVRCVY	0.9999	0.9154	0.1984	363.71	0.3839	12.4	1/982	1/7748
SNV	Breast	PIGM_F275L_4	HLA-B39:10	SPYLYMLYL	0.5009	0.8112	0.1913	28.14	0.1597	17.55	1/982	1/7748
SNV	Breast	PIGM_F275L_7	HLA-C12:03	HNFSPYLYM	0.7444	0.9832	1.3253	109.46	0.5463	17.55	1/982	1/7748
SNV	Breast	PLA2R1_Q910E_6	HLA-A31:01	RTVNNESQR	0.9861	0.5666	0.1683	31.7	0.1099	3.7	1/982	1/7748
SNV	Breast	PPP2R5D_L357V_1	HLA-C16:01	VTEPVIVGL	0.8781	0.981	0.4339	243.14	0.6321	56.32	1/982	1/7748
SNV	Breast	PPP2R5D_L357V_1	HLA-C12:03	VTEPVIVGL	0.7139	0.9674	0.6339	259.21	0.8283	56.32	1/982	1/7748
SNV	Breast	PRMT7_N453K_1	HLA-C16:01	KIIEKRPEL	0.9979	0.9731	0.4516	7.3	0.0731	10.25	1/982	1/7748
SNV	Breast	PRMT7_N453K_1	HLA-C12:03	KIIEKRPEL	0.9966	0.9731	0.6284	25.07	0.2435	10.25	1/982	1/7748
SNV	Breast	PRPF6_K117Q_7	HLA-A31:01	RMDERRQER	0.9675	0.5365	0.5255	22.15	0.0916	150.84	1/982	1/7748
SNV	Breast	RBBP8_E752Q_1	HLA-B44:03	QELSTATKKL	0.9797	0.9722	0.1802	110.18	0.2907	50.14	1/982	1/7748
SNV	Breast	SMAP1_E213Q_4	HLA-C16:01	KAAQPTVDL	0.8769	0.9601	0.0784	4.76	0.044	10.64	1/982	1/7748
SNV	Breast	SMAP1_E213Q_3	HLA-C16:01	AAQPTVDLL	0.8831	0.9732	0.1364	60.63	0.3231	10.64	1/982	1/7748
SNV	Breast	SMAP1_E213Q_4	HLA-C12:03	KAAQPTVDL	0.9517	0.9621	0.1365	28.91	0.2695	10.64	1/982	1/7748
SNV	Breast	SMAP1_E213Q_3	HLA-C12:03	AAQPTVDLL	0.8677	0.969	0.159	144.99	0.6255	10.64	1/982	1/7748
SNV	Breast	SMC6_S565F_9	HLA-C16:01	TSRPPIIVF	0.6341	0.9472	0.0711	5.04	0.0478	17.9	1/982	1/7748
SNV	Breast	SMC6_S565F_3	HLA-C16:01	IVFEFRNEI	0.908	0.9646	0.5473	10.12	0.1	17.9	1/982	1/7748
SNV	Breast	SMC6_S565F_9	HLA-C12:03	TSRPPIIVF	0.9335	0.9464	0.1121	5.34	0.0642	17.9	1/982	1/7748
SNV	Breast	SMC6_S565F_3	HLA-C12:03	IVFEFRNEI	0.9759	0.9787	0.2269	4.35	0.0485	17.9	1/982	1/7748
SNV	Breast	STIP1_D456H_8	HLA-C12:03	DVYQKALHL	0.7625	0.9774	1.1775	220.8	0.7705	246.5	1/982	1/7748
SNV	Breast	TRAV3_P5H_9	HLA-C16:01	SAHISMLAM	0.8243	0.9807	0.0431	4.97	0.0469	3.95	1/982	1/7748
SNV	Breast	TRAV3_P5H_9	HLA-C12:03	SAHISMLAM	0.9655	0.9785	0.0511	7.92	0.0993	3.95	1/982	1/7748
SNV	Breast	UPF2_V846L_9	HLA-B44:03	QEDVGIHVL	0.9795	0.9529	0.2808	48.34	0.2242	45.31	1/982	1/7748
SNV	Breast	UTRN_Q2218K_7	HLA-A31:01	ASDIPVKSHR	0.9277	0.6274	1.1365	100.93	0.2115	20.07	1/982	1/7748
SNV	Breast	CNTNAP1_A49V_9	HLA-C03:03	SSYYSLLTV	0.8897	0.9908	1.0384	396.55	0.4651	7.09	1/982	1/7748
SNV	Breast	CNTNAP1_A49V_3	HLA-C03:03	LTVPRFARL	0.9979	0.9712	0.2796	463.37	0.4903	7.09	1/982	1/7748
SNV	Breast	PC_M616I_7	HLA-C03:03	ATFDVAIRF	0.9901	0.987	0.7165	137.9	0.3104	12.82	1/982	1/7748
SNV	Breast	PPP1R32_P229H_7	HLA-C03:03	QALPGDHAL	0.9995	0.9852	0.0295	5.39	0.0527	3.87	1/982	1/7748
SNV	Breast	PPP1R32_P229H_1	HLA-C03:03	HALLPGQSV	0.9939	0.9919	0.1417	28.59	0.1629	3.87	1/982	1/7748
SNV	Breast	SLC35A5_T344A_4	HLA-C03:03	VIIATVSVL	0.9983	0.9945	0.2369	31.36	0.1685	24.48	1/982	1/7748
SNV	Breast	SLC35A5_T344A_2	HLA-C03:03	IATVSVLVF	0.9983	0.9895	0.422	279.91	0.4087	24.48	1/982	1/7748
SNV	Breast	TRPM2_L1161R_8	HLA-C08:02	KVDAMVDRL	0.9995	0.971	0.0956	190.16	0.0959	2.62	1/982	1/7748
SNV	Breast	FBXW7_R357K_5	HLA-C12:03	SAYIKQHRI	0.8659	0.9241	0.4146	28.18	0.2645	6.86	1/982	1/7748
SNV	Breast	INTS6_M36I_7	HLA-C12:03	GAVETFIKL	0.9968	0.9834	0.159	44.27	0.3471	12.39	1/982	1/7748
SNV	Breast	PIK3CA_T1025A_7	HLA-C12:03	IAYIRKAL	0.9985	0.9875	0.6583	274.37	0.8477	14.64	1/982	2/7748
SNV	Breast	SGSM2_L136P_4	HLA-C12:03	RTAPIEKVL	0.9883	0.9715	0.4146	15.33	0.1776	16.3	1/982	1/7748
SNV	Breast	STX6_E72K_3	HLA-C12:03	IVKANPRKF	0.6559	0.9522	0.3784	137.28	0.6081	33.79	1/982	1/7748
SNV	Breast	STX6_E72K_1	HLA-C12:03	KANPRKFNL	0.9337	0.9821	0.4986	13.88	0.1635	33.79	1/982	1/7748
SNV	Breast	TMEM38B_A218D_4	HLA-C12:03	FIVDTKITM	0.9997	0.9785	0.0922	4.37	0.0489	5.53	1/982	1/7748
SNV	Breast	TMEM38B_A218D_3	HLA-C12:03	IVDTKITMM	0.9138	0.9796	0.5679	62.47	0.4094	5.53	1/982	1/7748
SNV	Breast	CADM3_A205V_7	HLA-B38:01	TREDDGVSI	0.9853	0.6475	0.2657	226.99	0.117	4.51	1/982	1/7748
SNV	Breast	FOXO1_T385R_5	HLA-C17:01	LSSPRSLTV	0.9623	0.886	0.0634	177.51	0.286	35.46	1/982	1/7748
SNV	Breast	FOXO1_T385R_5	HLA-C12:03	LSSPRSLTV	0.9915	0.9735	0.0476	35.43	0.3084	35.46	1/982	1/7748
SNV	Breast	CASD1_T431A_1	HLA-B40:01	ADEWKGWMQL	0.8067	0.5604	1.459	4.84	0.1774	12.18	1/982	1/7748
SNV	Breast	DCAF4L2_L239P_8	HLA-C03:04	FAIMTPLPF	0.9984	0.9878	0.0424	10.33	0.0847	1.81	1/982	1/7748
SNV	Breast	ISG15_R99L_4	HLA-B40:01	YEVLLTQTV	0.9929	0.5202	0.0278	1.77	0.072	696.4	1/982	1/7748
SNV	Breast	RDH14_M316I_2	HLA-A11:01	AIDESVARK	0.9973	0.5371	0.4893	5.1	0.0585	57.58	1/982	1/7748
SNV	Breast	RFC1_K902R_8	HLA-A11:01	VAAGGDMRK	0.9885	0.6125	0.5521	184.98	0.3965	43.96	1/982	1/7748
SNV	Breast	ANO8_V759L_8	HLA-A02:11	FVQFGYVLL	0.894	0.6275	0.5607	245.78	1.1927	24.56	1/982	1/7748
SNV	Breast	ANO8_V759L_1	HLA-A02:11	LLFSSAFPL	0.9874	0.5889	0.0083	5.36	0.2925	24.56	1/982	1/7748
SNV	Breast	ANO8_V759L_7	HLA-B52:01	VQFGYVLL	0.869	0.9757	0.2208	398.43	0.0523	24.56	1/982	1/7748
SNV	Breast	BARX2_P71L_4	HLA-B52:01	RAYLLLSVI	0.5721	0.711	0.3584	319.21	0.0446	4.97	1/982	1/7748
SNV	Breast	CDH23_E1695Q_8	HLA-C07:01	FRIDRHMQV	0.99	0.6925	0.023	2.72	0.0059	2.53	1/982	1/7748
SNV	Breast	CDH23_E1695Q_8	HLA-C07:01	FRIDRHMQVI	0.9974	0.5727	0.3733	313.75	0.141	2.53	1/982	1/7748
SNV	Breast	CMYA5_D941V_9	HLA-A02:11	NLSEEDQEV	0.9534	0.5615	0.6295	21.15	0.5724	4.41	1/982	1/7748
SNV	Breast	ERBB2_E405D_4	HLA-A02:11	TLEDITGYL	0.9412	0.7285	0.4467	4.91	0.2796	3138.23	1/982	1/7748
SNV	Breast	ERBB2_E405D_3	HLA-B18:01	LEDITGYLY	0.9891	0.9512	0.0638	12.49	0.0681	3138.23	1/982	1/7748
SNV	Breast	ERBB2_E405D_6	HLA-B18:01	FETLEDITGY	0.9311	0.9438	0.3606	51.23	0.1199	3138.23	1/982	1/7748
SNV	Breast	HS2ST1_R270Q_4	HLA-A02:11	ALPQFFRGA	0.8976	0.8011	0.642	275.75	1.2295	23.26	1/982	1/7748
SNV	Breast	HS2ST1_R270Q_7	HLA-B18:01	LEAALPQF	0.9944	0.9311	0.1502	362.12	0.239	23.26	1/982	1/7748
SNV	Breast	HS2ST1_R270Q_7	HLA-B18:01	LEAALPQFF	0.9935	0.941	0.0351	6.82	0.0465	23.26	1/982	1/7748
SNV	Breast	TNS4_S324A_9	HLA-A02:11	SLHSLGSVAL	0.8456	0.6481	0.8239	422.89	1.3668	29.66	1/982	1/7748
SNV	Breast	ZNF701_C341F_3	HLA-B18:01	NEFGKTFSH	0.996	0.8425	0.1148	29.66	0.0979	6.17	1/982	1/7748
SNV	Breast	CCR1_I129N_3	HLA-C16:01	LTNDRYLAI	0.8917	0.9454	0.1849	32.1	0.2244	7.25	1/982	1/7748
SNV	Breast	KIAA1524_L423V_8	HLA-C16:01	IAKAIEVVL	0.8784	0.9881	0.2036	15.31	0.1416	4.33	1/982	1/7748
SNV	Breast	KIAA1524_L423V_6	HLA-C16:01	KAIEVVLTL	0.9993	0.9861	0.0022	1.3	0.0039	4.33	1/982	1/7748
SNV	Breast	MKS1_E501K_5	HLA-C16:01	RAFMKSSSL	0.9949	0.9788	0.0209	1.48	0.0058	22.28	1/982	1/7748
SNV	Breast	PLA2R1_W1044L_6	HLA-C16:01	VVYSNLSPF	0.8814	0.9764	0.1633	21.23	0.1758	2.41	1/982	1/7748
SNV	Breast	PLEKHA8_A460S_3	HLA-C16:01	RASPSYEDF	0.5367	0.957	0.1709	125.95	0.4728	4.63	1/982	1/7748
SNV	Breast	RPRD1B_N189K_1	HLA-C16:01	KAASGDATV	0.5694	0.9781	0.4145	187.61	0.5641	11.94	1/982	1/7748
SNV	Breast	TMEM100_V70M_1	HLA-B35:01	MVTAVAYSF	0.9828	0.9614	0.0783	45.42	0.2369	5.42	1/982	1/7748
SNV	Breast	IFT140_T929M_7	HLA-C04:01	YYEKSDMHRF	0.9994	0.5185	0.7422	439.33	0.1452	22.99	1/982	1/7748
SNV	Breast	IFT140_T929M_4	HLA-C15:02	KSDMHRFEV	0.9989	0.879	0.2095	52.01	0.2792	22.99	1/982	1/7748
SNV	Breast	CFLAR_A189S_8	HLA-B14:02	YRNVLQASI	0.999	0.7066	0.0544	469.26	0.0839	6.12	1/982	1/7748
SNV	Breast	DDX1_S150F_1	HLA-C05:01	FTMQASLDL	0.9352	0.8656	1.1921	312.65	0.344	50.68	1/982	1/7748
SNV	Breast	EFNA5_N178S_6	HLA-C05:01	RVFDVSDKV	0.9751	0.8913	1.2504	422.31	0.382	4.48	1/982	1/7748
SNV	Breast	EFNA5_N178S_2	HLA-C05:01	VSDKVENSL	1	0.9252	0.0071	3.38	0.0431	4.48	1/982	1/7748
SNV	Breast	EFNA5_N178S_2	HLA-C08:02	VSDKVENSL	0.9999	0.9692	0.0031	42.83	0.0455	4.48	1/982	1/7748
SNV	Breast	PNPLA6_A287V_1	HLA-C05:01	VARDSTVLRL	0.9874	0.9857	1.1921	200.87	0.2892	38.29	1/982	1/7748
SNV	Breast	TMEM74B_R157W_1	HLA-B18:01	WEMERLEMY	0.9995	0.7585	0.0088	2.03	0.0081	3.59	1/982	1/7748
SNV	Breast	TMEM74B_R157W_1	HLA-B18:01	WEMERLEMYY	0.9979	0.7586	0.1985	251.5	0.214	3.59	1/982	1/7748
SNV	Breast	ADAMTSL3_R1207M_2	HLA-C16:01	KMTEVINIL	0.9808	0.9644	1.0139	61.53	0.3261	2.98	1/982	1/7748
SNV	Breast	DOCK10_R1879H_6	HLA-C16:01	FGRYYHVAF	0.566	0.946	1.2308	220.26	0.6033	5.26	1/982	1/7748
SNV	Breast	CACHD1_A876S_1	HLA-C16:01	SRIPGTNAF	0.6492	0.9688	1.863	271.75	0.6646	5.41	1/982	1/7748
SNV	Breast	DNAJC10_G197E_2	HLA-B45:01	KEVNSYPSL	0.89	0.7094	0.2226	150.74	0.2368	15.22	1/982	1/7748
SNV	Breast	HACE1_K496Q_7	HLA-C16:01	FVNRNPQII	0.6862	0.9733	1.192	364.27	0.7486	6.77	1/982	1/7748
SNV	Breast	PTPRG_I16S_1	HLA-A02:01	STSSVLHYV	0.9861	0.5463	0.0623	204.05	0.5102	34.88	1/982	1/7748
SNV	Breast	PTPRG_I16S_4	HLA-C16:01	FLKSTSSVL	0.7148	0.9857	0.9025	397.1	0.7731	34.88	1/982	1/7748
SNV	Breast	PTPRG_I16S_1	HLA-C17:01	STSSVLHYV	0.6906	0.8387	0.2336	49.08	0.1357	34.88	1/982	1/7748
SNV	Breast	RIMKLB_D301G_4	HLA-A02:01	IIAGYAASL	0.9631	0.6668	0.5496	132.55	0.4369	9.83	1/982	1/7748
SNV	Breast	RIMKLB_D301G_4	HLA-C16:01	IIAGYAASL	0.9883	0.9857	0.6897	27.44	0.2	9.83	1/982	1/7748
SNV	Breast	RIMKLB_D301G_3	HLA-C16:01	IAGYAASLL	0.7379	0.9832	0.6358	316.78	0.709	9.83	1/982	1/7748
SNV	Breast	SH3BP4_F785L_8	HLA-C16:01	YVNLPLTL	0.997	0.97	0.5381	67.45	0.3448	21.13	1/982	1/7748
SNV	Breast	SH3BP4_F785L_8	HLA-C16:01	YVNLPLTLF	0.9461	0.9718	0.1849	25.82	0.1943	21.13	1/982	1/7748
SNV	Breast	TIAM2_S1178L_7	HLA-C16:01	NTLETPLQF	0.629	0.964	0.1548	91.6	0.4072	1.74	1/982	1/7748
SNV	Breast	ADHFE1_A237T_2	HLA-B15:16	VTNSGFDVL	0.8901	0.8156	0.6212	87.38	0.4673	2.78	1/982	1/7748
SNV	Breast	ADHFE1_A237T_2	HLA-C16:01	VTNSGFDVL	0.7731	0.9731	0.5171	80.41	0.3806	2.78	1/982	1/7748
SNV	Breast	ALKBH1_K3E_10	HLA-B45:01	GEMAAAVGSV	0.9974	0.989	0.114	100.16	0.2019	4.75	1/982	1/7748
SNV	Breast	ALKBH1_K3E_10	HLA-B45:01	GEMAAAVGSVA	0.9996	0.9906	0.1261	253.52	0.2859	4.75	1/982	1/7748
SNV	Breast	CIB2_R134Q_3	HLA-C16:01	LAQLTKSEL	0.9584	0.9832	0.3356	159.17	0.5246	5.64	1/982	1/7748
SNV	Breast	CNTN4_S1024F_9	HLA-B15:16	IMISLTARF	0.9703	0.6557	0.2547	199.02	0.6949	2.03	1/982	1/7748
SNV	Breast	CNTN4_S1024F_7	HLA-B15:16	ISLTARFSL	0.9866	0.5135	0.2854	137.78	0.5766	2.03	3/982	3/7748
SNV	Breast	CNTN4_S1024F_7	HLA-B15:16	ISLTARFSL	0.9866	0.5135	0.2854	137.78	0.5766	2.03	3/982	3/7748
SNV	Breast	CNTN4_S1024F_7	HLA-B15:16	ISLTARFSL	0.9866	0.5135	0.2854	137.78	0.5766	2.03	3/982	3/7748
SNV	Breast	CNTN4_S1024F_7	HLA-C16:01	ISLTARFSL	0.9267	0.9785	0.4239	15.64	0.1443	2.03	3/982	3/7748
SNV	Breast	CNTN4_S1024F_7	HLA-C16:01	ISLTARFSL	0.9267	0.9785	0.4239	15.64	0.1443	2.03	3/982	3/7748
SNV	Breast	CNTN4_S1024F_7	HLA-C16:01	ISLTARFSL	0.9267	0.9785	0.4239	15.64	0.1443	2.03	3/982	3/7748
SNV	Breast	GPR156_T122K_5	HLA-C16:01	TLIQKRLSM	0.8668	0.9672	0.8925	78.02	0.3744	1.39	1/982	1/7748
SNV	Breast	GPR156_T122K_5	HLA-C14:02	TLIQKRLSM	0.6807	0.9486	0.4886	99.81	0.5021	1.39	1/982	1/7748
SNV	Breast	IMMT_K257E_6	HLA-B15:16	HSNILEAAM	0.9459	0.7104	0.9356	466.62	1.0225	44.79	1/982	1/7748
SNV	Breast	IMMT_K257E_6	HLA-C16:01	HSNILEAAM	0.6513	0.9886	0.3132	452.74	0.8117	44.79	1/982	1/7748
SNV	Breast	KIF2C_D279H_7	HLA-B15:16	LAKKEIHVI	0.9524	0.5757	0.8831	178.73	0.6564	28.35	1/982	1/7748
SNV	Breast	PDCL3_R76W_8	HLA-B15:16	RAIEMYRW	0.997	0.9313	0.8692	281.42	0.8077	31.06	1/982	1/7748
SNV	Breast	PSPH_G54V_5	HLA-B15:16	RAMGVAVPF	0.9929	0.9394	0.0111	12.53	0.1193	14.27	1/982	1/7748
SNV	Breast	PSPH_G54V_1	HLA-B15:16	VAVPFKAAL	0.9544	0.7839	0.2829	173.08	0.6449	14.27	1/982	1/7748
SNV	Breast	PSPH_G54V_5	HLA-C16:01	RAMGVAVPF	0.9326	0.9902	0.0116	3.44	0.03	14.27	1/982	1/7748
SNV	Breast	PSPH_G54V_1	HLA-C16:01	VAVPFKAAL	0.9617	0.9856	0.0158	2.59	0.0179	14.27	1/982	1/7748
SNV	Breast	PSPH_G54V_1	HLA-C14:02	VAVPFKAAL	0.6109	0.9801	0.1593	146.53	0.6002	14.27	1/982	1/7748
SNV	Breast	RNASET2_V178E_2	HLA-B45:01	GEIPKIQCL	0.9635	0.6314	0.2766	175.16	0.2496	33.5	1/982	1/7748
SNV	Breast	RNASET2_V178E_5	HLA-B15:16	RVYGEIPKI	0.994	0.8726	0.5567	5.42	0.0406	33.5	1/982	1/7748
SNV	Breast	RNASET2_V178E_5	HLA-C16:01	RVYGEIPKI	0.9622	0.9465	1.4669	16.82	0.1526	33.5	1/982	1/7748
SNV	Breast	RUNX1_F70L_8	HLA-C14:02	VRTDSPNLL	0.6982	0.9643	1.7071	169.6	0.6424	14.28	1/982	1/7748
SNV	Breast	RUNX1_F70Y_9	HLA-B15:16	LVRTDSPNY	0.8401	0.7982	0.8762	269.98	0.7929	14.28	1/982	1/7748
SNV	Breast	RUNX1_F70Y_8	HLA-C14:02	VRTDSPNYL	0.6362	0.9535	1.521	72.91	0.425	14.28	1/982	1/7748
SNV	Breast	SCAF11_K165E_6	HLA-B45:01	SETGGEKNA	0.9762	0.8814	0.0808	416.72	0.3477	10.22	1/982	1/7748
SNV	Breast	SCAF11_K165E_2	HLA-B45:01	GEKNAAIKI	0.944	0.8053	0.2494	123.17	0.2195	10.22	1/982	1/7748
SNV	Breast	TMTC3_V348L_9	HLA-B15:16	YSGDSSKTL	0.5247	0.544	0.5567	308.81	0.8446	5.64	1/982	1/7748
SNV	Breast	TMTC3_V348L_9	HLA-C16:01	YSGDSSKTL	0.6588	0.9828	0.1579	31.22	0.2201	5.64	1/982	1/7748
SNV	Breast	TMTC3_V348L_5	HLA-C16:01	SSKTLLMAL	0.8428	0.969	0.0969	33.36	0.2304	5.64	1/982	1/7748
SNV	Breast	TMTC3_V348L_10	HLA-C14:02	RYSGDSSKTL	0.9211	0.9662	0.5689	211.34	0.7089	5.64	1/982	1/7748
SNV	Breast	USP28_I1003T_2	HLA-B15:16	ATEVMRNHW	0.9152	0.902	0.3705	69.46	0.4044	11.34	1/982	1/7748
SNV	Breast	WSB1_D341N_3	HLA-A02:01	RINEDYPVQV	0.982	0.5725	0.8661	288.23	0.5662	8.85	1/982	1/7748
SNV	Breast	WSB1_D341N_1	HLA-B45:01	NEDYPVQVA	0.9973	0.7659	0.1058	7.1	0.0364	8.85	1/982	1/7748
SNV	Breast	CDK20_H296Y_6	HLA-B81:01	APLPAYPSEL	0.8605	0.6149	0.0734	57.48	0.0771	9.62	1/982	1/7748
SNV	Breast	CD109_E1329K_5	HLA-A68:02	MVPSKAISL	0.9573	0.7104	1.2223	275.91	0.3664	3.58	1/982	1/7748
SNV	Breast	CD109_E1329K_5	HLA-B08:01	MVPSKAISL	0.9962	0.654	0.0367	43.03	0.1067	3.58	1/982	1/7748
SNV	Breast	CD109_E1329K_5	HLA-C16:01	MVPSKAISL	0.9955	0.9767	0.2784	10.56	0.1038	3.58	1/982	1/7748
SNV	Breast	CD109_E1329K_1	HLA-C16:01	KAISLSETV	0.9337	0.9707	0.2372	62.02	0.3277	3.58	1/982	1/7748
SNV	Breast	CTNNB1_M98V_9	HLA-C16:01	RAQRVRAAV	0.8893	0.9806	0.7424	150.78	0.5116	254.36	1/982	1/7748
SNV	Breast	CTNNB1_M98V_4	HLA-C16:01	RAAVFPETL	0.9835	0.9878	0.0266	2.57	0.0177	254.36	1/982	1/7748
SNV	Breast	GLUD2_M290L_4	HLA-C16:01	ASYLSILGM	0.861	0.9698	0.4056	44.24	0.2719	2.07	1/982	1/7748
SNV	Breast	HSPG2_V3009I_9	HLA-B52:01	QEASFTVTI	0.5051	0.975	0.0185	136.71	0.0203	52.38	1/982	1/7748
SNV	Breast	TPP2_E347K_1	HLA-C16:01	KAVWKHNII	0.6353	0.9547	0.7526	374.04	0.7561	26.26	1/982	1/7748
SNV	Breast	ACIN1_R40L_8	HLA-C15:02	GTFEGRWLKL	0.9983	0.9356	0.9576	315.45	0.6347	23.47	1/982	1/7748
SNV	Breast	BZW2_M398I_5	HLA-C15:02	FLDQIKKFV	0.9631	0.8967	0.4059	201.21	0.5229	36.09	1/982	1/7748
SNV	Breast	CD96_S342I_9	HLA-C15:02	KSVLTRVHI	0.9985	0.6512	0.3296	188.7	0.5085	1.22	1/982	1/7748
SNV	Breast	DDX60L_K1167I_9	HLA-C15:02	KTQKRITKI	0.9977	0.8449	0.1273	59.31	0.2991	4.71	1/982	1/7748
SNV	Breast	DGCR2_D170Y_4	HLA-B40:01	QEWYQPERSF	0.9674	0.5409	0.4988	313.42	0.5879	32.12	1/982	1/7748
SNV	Breast	FAT1_R806H_5	HLA-C15:02	KAAWHLLHV	0.9997	0.9839	0.0001	11.52	0.0921	8.31	1/982	1/7748
SNV	Breast	FAT1_R806H_4	HLA-C15:02	AAWHLLHVV	0.9996	0.9913	0.1134	283.46	0.5997	8.31	1/982	1/7748
SNV	Breast	KIAA1429_G1581V_9	HLA-A02:01	FLSEPSSPV	0.9982	0.5638	0.0279	2.08	0.0471	108.12	1/982	1/7748
SNV	Breast	KLHL25_V440G_1	HLA-C15:02	GSAKLKLFV	0.9983	0.8568	0.8036	473.19	0.7581	3.18	1/982	1/7748
SNV	Breast	KLHL25_V440G_5	HLA-C03:04	NAAVGSAKL	0.998	0.9573	0.1404	160.49	0.3312	3.18	1/982	1/7748
SNV	Breast	OBSCN_R1269Q_2	HLA-B40:01	VQTEAGASATL	0.9902	0.7499	1.8401	60.82	0.4057	102.33	1/982	1/7748
SNV	Breast	PLCH1_P745L_9	HLA-C15:02	KVISGQQLL	0.9991	0.7251	0.1304	16.1	0.1249	2	1/982	1/7748
SNV	Breast	PLCH1_P745L_9	HLA-C03:04	KVISGQQLL	0.992	0.9736	0.2016	95.92	0.2702	2	1/982	1/7748
SNV	Breast	PLEKHM3_L190F_3	HLA-A02:01	FLFPSPNKI	0.9962	0.5383	0.0348	1.28	0.0137	1.01	1/982	1/7748
SNV	Breast	PLEKHM3_L190F_3	HLA-C15:02	FLFPSPNKI	0.9532	0.9422	0.1186	8.18	0.0722	1.01	1/982	1/7748
SNV	Breast	PLEKHM3_L190F_3	HLA-C03:04	FLFPSPNKI	0.8261	0.99	0.044	12.12	0.0947	1.01	1/982	1/7748
SNV	Breast	POGZ_E1206D_3	HLA-A02:01	IMDLWSTRV	0.993	0.7822	0.2016	20.02	0.2175	16.88	1/982	1/7748
SNV	Breast	POGZ_E1206D_8	HLA-C15:02	YSDDEIMDL	0.9697	0.8898	0.0354	20.62	0.1489	16.88	1/982	1/7748
SNV	Breast	POGZ_E1206D_8	HLA-C03:04	YSDDEIMDL	0.9776	0.9885	0.0576	192.45	0.3561	16.88	1/982	1/7748
SNV	Breast	PRDM10_R129I_9	HLA-C15:02	ATLQTPLGI	0.998	0.9658	0.2796	10.58	0.0872	3.2	1/982	1/7748
SNV	Breast	SEMA4F_A81V_9	HLA-C15:02	ASHTLYVGV	0.9993	0.7838	0.2634	468.05	0.7551	3.48	1/982	1/7748
SNV	Breast	SEMA4F_A81V_2	HLA-C15:02	GVRDTIFAL	0.9533	0.8555	1.4359	70.11	0.3294	3.48	1/982	1/7748
SNV	Breast	SEMA4F_A81V_2	HLA-C03:04	GVRDTIFAL	0.886	0.9689	1.2094	311.25	0.4259	3.48	1/982	1/7748
SNV	Breast	SNX7_D203H_6	HLA-C15:02	LTFNEHFKI	0.9986	0.88	0.2549	46.25	0.2614	10.37	1/982	1/7748
SNV	Breast	TTN_K21249E_5	HLA-C15:02	KSWMEANHV	0.9988	0.7732	0.1528	195.54	0.5164	258.13	1/982	1/7748
SNV	Breast	USP39_V157I_9	HLA-C15:02	KSHAYIHSI	0.9997	0.7576	0.0014	6.49	0.0559	20.1	1/982	1/7748
SNV	Breast	USP39_V157I_7	HLA-C15:02	HAYIHSIQF	0.96	0.8218	0.3359	50.57	0.2749	20.1	1/982	1/7748
SNV	Breast	USP39_V157I_3	HLA-C15:02	HSIQFSHHV	0.9998	0.7976	0.0231	22.09	0.1564	20.1	1/982	1/7748
SNV	Breast	USP39_V157I_7	HLA-C03:04	HAYIHSIQF	0.999	0.9715	0.0691	3.26	0.0338	20.1	1/982	1/7748
SNV	Breast	USP39_V157I_1	HLA-C03:04	IQFSHHVFL	0.9441	0.9849	0.7765	388.94	0.462	20.1	1/982	1/7748
SNV	Breast	AMOTL2_E61K_5	HLA-A02:01	ILAPKDSQV	0.9954	0.6711	0.3495	3.56	0.0755	37.12	1/982	1/7748
SNV	Breast	AMOTL2_E61K_5	HLA-C05:01	ILAPKDSQV	0.9983	0.9901	0.874	262.49	0.3219	37.12	1/982	1/7748
SNV	Breast	C2CD3_C1420Y_8	HLA-A02:01	RLWLPIHYV	0.9951	0.6675	0.0495	1.66	0.0341	6.92	1/982	1/7748
SNV	Breast	CUL9_M651I_7	HLA-A02:01	LLVTEGITL	0.9586	0.7705	0.519	97.87	0.3888	8.24	1/982	1/7748
SNV	Breast	CYB5A_E43Q_4	HLA-A02:01	FLEQHPGGEEV	0.9955	0.7331	0.9594	222.79	0.5244	70.85	1/982	1/7748
SNV	Breast	DGKH_P851A_7	HLA-B35:01	IAVLNIASY	0.9959	0.7951	0.0149	3.8	0.074	18.65	1/982	1/7748
SNV	Breast	DOCK11_S1306L_1	HLA-B35:01	LPQELINIL	0.992	0.8211	0.1884	7.16	0.1078	5.11	1/982	1/7748
SNV	Breast	DPM3_T22N_3	HLA-A02:01	ALNTGALGL	0.9565	0.5483	0.7225	71.02	0.3475	204.21	1/982	1/7748
SNV	Breast	ETV6_S350F_2	HLA-C04:01	LFDSRYENF	0.9986	0.6477	0.0177	5.68	0.0137	34.48	1/982	1/7748
SNV	Breast	FAHD2A_S78L_10	HLA-C05:01	FLEQGEATLL	0.9999	0.9938	0.0943	408.74	0.3779	4.06	1/982	1/7748
SNV	Breast	FES_A271T_1	HLA-B35:01	TPDVPPCVTF	0.9911	0.9446	0.312	48.31	0.2418	9.5	1/982	1/7748
SNV	Breast	FNDC1_H864Y_9	HLA-B35:01	RAHPRVPSY	0.9584	0.8873	0.108	10.45	0.132	16.76	1/982	1/7748
SNV	Breast	FNDC1_H864Y_2	HLA-C04:01	SYSDSHPKL	0.9801	0.6954	0.1935	214.49	0.1044	16.76	1/982	1/7748
SNV	Breast	FNDC1_H864Y_1	HLA-C05:01	YSDSHPKL	1	0.8429	0.0029	111.29	0.2297	16.76	1/982	1/7748
SNV	Breast	FSTL4_E715Q_6	HLA-A02:01	WLHVQQITV	0.991	0.5617	0.1611	303.38	0.5745	1.28	1/982	1/7748
SNV	Breast	GNA12_E357K_5	HLA-C04:01	AIDTKNVRF	0.9997	0.7677	0.0968	271.25	0.1154	20.95	1/982	2/7748
SNV	Breast	GNA12_E357K_5	HLA-C05:01	AIDTKNVRF	0.9997	0.98	0.0781	10.07	0.0902	20.95	1/982	1/7748
SNV	Breast	HDDC3_E73K_4	HLA-C04:01	TLDKVELHF	0.9998	0.7425	0.0471	136.24	0.082	14.5	1/982	1/7748
SNV	Breast	HDDC3_E73K_4	HLA-C05:01	TLDKVELHF	0.9998	0.9118	0.038	4.4	0.0507	14.5	1/982	1/7748
SNV	Breast	HEYL_F179L_2	HLA-A02:01	SLFHSCPGL	0.914	0.7438	0.0516	84.17	0.3694	15.31	1/982	1/7748
SNV	Breast	HEYL_F179L_8	HLA-B35:01	FPAWPWSLF	0.9992	0.9624	0.006	4.64	0.0862	15.31	1/982	1/7748
SNV	Breast	HPS6_D685H_3	HLA-A02:01	RLHAHLPLL	0.9907	0.6929	0.0653	6.47	0.123	22.91	1/982	1/7748
SNV	Breast	HPX_S190F_9	HLA-B35:01	WPAVGNCSF	0.997	0.8824	0.0283	3.24	0.0622	12.21	1/982	1/7748
SNV	Breast	HSD17B4_S398L_9	HLA-A02:01	GLAEIPGLL	0.9923	0.5038	0.4681	5.2	0.1071	55.69	1/982	1/7748
SNV	Breast	HSD17B4_S398L_9	HLA-C05:01	GLAEIPGLL	0.9961	0.9047	1.7386	251.29	0.3164	55.69	1/982	1/7748
SNV	Breast	HSD17B4_S398L_8	HLA-C05:01	LAEIPGLLI	0.9997	0.9388	0.1683	38.59	0.1546	55.69	1/982	1/7748
SNV	Breast	HSPD1_E154K_8	HLA-C05:01	AVDAVIAKL	0.9999	0.9714	0.012	1.76	0.0198	140.3	1/982	1/7748
SNV	Breast	INHA_V281M_2	HLA-A02:01	IMYPPSFIF	0.8729	0.5674	1.8035	493.52	0.6726	1.97	1/982	1/7748
SNV	Breast	JADE3_R538T_8	HLA-A02:01	SLFYPPPTI	0.984	0.7619	0.2355	3.6	0.0761	12.47	1/982	1/7748
SNV	Breast	JADE3_R538T_8	HLA-A02:01	SLFYPPPTITL	0.9893	0.7778	1.8035	33.73	0.2634	12.47	1/982	1/7748
SNV	Breast	JADE3_R538T_5	HLA-B35:01	YPPPTITL	0.9608	0.6901	0.674	232.89	0.394	12.47	1/982	1/7748
SNV	Breast	JADE3_R538T_7	HLA-C04:01	LFYPPPTITL	0.9804	0.7296	0.5222	367.7	0.1322	12.47	1/982	1/7748
SNV	Breast	KDM4C_S451L_9	HLA-A02:01	NLSDHIKLL	0.9395	0.6051	0.3795	119.67	0.4194	5.4	1/982	1/7748
SNV	Breast	KIAA0100_E1670Q_7	HLA-A02:01	SLDSVQQLM	0.9671	0.5006	0.5235	56.24	0.3175	40.66	1/982	1/7748
SNV	Breast	KIAA0100_E1670Q_7	HLA-C04:01	SLDSVQQLM	0.9999	0.8437	0.0343	127.69	0.0798	40.66	1/982	1/7748
SNV	Breast	KIAA0100_E1670Q_7	HLA-C05:01	SLDSVQQL	1	0.8671	0.018	374.47	0.3668	40.66	1/982	1/7748
SNV	Breast	KIAA0100_E1670Q_7	HLA-C05:01	SLDSVQQLM	0.9999	0.8991	0.005	1.89	0.0224	40.66	1/982	1/7748
SNV	Breast	KIAA0100_E1670Q_8	HLA-C05:01	RSLDSVQQLM	0.9995	0.9723	1.4615	369.55	0.3652	40.66	1/982	1/7748
SNV	Breast	KIAA0753_E617K_8	HLA-A03:01	RLAWLDAKTSK	0.9996	0.6083	0.4641	34.66	0.1765	8.77	1/982	1/7748
SNV	Breast	MEGF8_D2707Y_1	HLA-B35:01	YPTAPASAW	0.9953	0.759	0.0446	1.9	0.0348	11.24	1/982	1/7748
SNV	Breast	MORC2_M253I_6	HLA-B35:01	YIDPRIRIF	0.9557	0.7582	0.8404	142.55	0.3437	24.7	1/982	1/7748
SNV	Breast	MORC2_M253I_6	HLA-C04:01	YIDPRIRIF	0.9993	0.563	0.0146	10.96	0.0232	24.7	1/982	1/7748
SNV	Breast	MORC2_M253I_7	HLA-C04:01	LYIDPRIRIF	0.9996	0.5653	0.6743	349.67	0.1286	24.7	1/982	1/7748
SNV	Breast	MORC2_M253I_6	HLA-C05:01	YIDPRIRI	1	0.8176	0.0311	47.63	0.1674	24.7	1/982	1/7748
SNV	Breast	MORC2_M253I_6	HLA-C05:01	YIDPRIRIF	0.9993	0.7904	0.0147	2.59	0.0347	24.7	1/982	1/7748
SNV	Breast	MORC2_M253I_6	HLA-C05:01	YIDPRIRIFI	0.9995	0.7998	0.1829	23.32	0.1304	24.7	1/982	1/7748
SNV	Breast	MORN1_E478K_6	HLA-B44:02	LEEGPKASSSW	0.9999	0.5721	0.0814	118.62	0.278	4.74	1/982	1/7748
SNV	Breast	MPHOSPH9_E1103Q_8	HLA-B35:01	TPQGNDFQY	0.9901	0.9222	0.0393	1.43	0.0209	2.67	1/982	1/7748
SNV	Breast	MPHOSPH9_E1103Q_9	HLA-B35:01	VTPQGNDFQY	0.8688	0.7925	1.218	40.13	0.2269	2.67	1/982	1/7748
SNV	Breast	MPP1_K281N_8	HLA-A03:01	VVRLPAFNRK	0.9653	0.5215	0.4719	94.02	0.2756	7.91	1/982	1/7748
SNV	Breast	MPP1_K281N_5	HLA-B35:01	LPAFNRKTL	0.9209	0.7714	0.5225	190.3	0.3733	7.91	1/982	1/7748
SNV	Breast	MRPL9_R232T_6	HLA-C05:01	GLDTVTVPM	0.9998	0.9361	0.088	14.22	0.1073	86.85	1/982	1/7748
SNV	Breast	MSC_S196F_10	HLA-B35:01	RPDSDTKEVF	0.9042	0.9358	0.4542	397.07	0.46	15.52	1/982	1/7748
SNV	Breast	MTMR12_S496L_1	HLA-B35:01	LPHQKDTNM	0.9843	0.9086	0.1722	10.13	0.1295	15.01	1/982	1/7748
SNV	Breast	MYOF_G855A_4	HLA-B35:01	FAEATFTVF	0.9909	0.9659	0.0315	5.91	0.0976	66.4	1/982	1/7748
SNV	Breast	MYOF_G855A_5	HLA-C04:01	SFAEATFTV	0.7862	0.9744	0.8413	408.42	0.1399	66.4	1/982	1/7748
SNV	Breast	MYOF_G855A_4	HLA-C05:01	FAEATFTVF	0.9997	0.9952	0.1904	33.26	0.1467	66.4	1/982	1/7748
SNV	Breast	NAA15_G502A_6	HLA-A02:01	AMNKFAEAL	0.9781	0.5484	0.4818	225.1	0.5261	11.29	1/982	1/7748
SNV	Breast	NPHP4_S756F_6	HLA-C04:01	VWDGDFLL	1	0.8187	0.1141	60.36	0.0596	2.28	1/982	1/7748
SNV	Breast	NPHP4_S756F_6	HLA-C04:01	VWDGDFLLL	0.9989	0.8425	0.0025	2.48	0.0066	2.28	1/982	1/7748
SNV	Breast	NRXN2_F368L_10	HLA-A02:01	ALVEPVNGKL	0.937	0.5523	0.9034	161.94	0.4712	2.24	1/982	1/7748
SNV	Breast	NRXN2_F368L_2	HLA-A02:01	KLNDNAWHDV	0.9958	0.7031	0.6989	19.47	0.2151	2.24	1/982	1/7748
SNV	Breast	NRXN2_F368L_9	HLA-C05:01	LVEPVNGKL	0.9996	0.9325	0.1623	64.23	0.1871	2.24	1/982	1/7748
SNV	Breast	NUP160_S571L_5	HLA-A02:01	FLIPLSLV	0.9983	0.6157	1.7836	254.21	0.5458	13.2	1/982	1/7748
SNV	Breast	NUP160_S571L_8	HLA-A02:01	YLSFLIPLSL	0.9889	0.6521	0.2375	458.77	0.6565	13.2	1/982	1/7748
SNV	Breast	NUP160_S571L_3	HLA-B35:01	IPLSLVDHL	0.9842	0.6397	0.1521	189.81	0.3731	13.2	1/982	1/7748
SNV	Breast	NUP160_S571L_3	HLA-B35:01	IPLSLVDHLY	0.9984	0.5601	0.1136	15.63	0.1611	13.2	1/982	1/7748
SNV	Breast	NUP188_G1454S_8	HLA-B35:01	EEADHTVSF	0.8171	0.9033	0.8562	124.15	0.3296	24.61	1/982	1/7748
SNV	Breast	OSBPL10_R454T_5	HLA-B35:01	TPEETVICF	0.9886	0.932	0.1611	3.22	0.0619	5.97	1/982	1/7748
SNV	Breast	PARS2_E151K_9	HLA-A03:01	RLRDRHGKK	0.9901	0.5103	0.1405	34.44	0.1759	5.54	1/982	1/7748
SNV	Breast	PICK1_E205K_11	HLA-A03:01	GVREPQPAASK	0.9994	0.5383	0.5437	423.82	0.4776	21.24	1/982	2/7748
SNV	Breast	PICK1_E205K_4	HLA-B35:01	AASKAFVKF	0.9882	0.8964	0.0783	470.57	0.4814	21.24	1/982	1/7748
SNV	Breast	PICK1_E205K_8	HLA-B35:01	EPQPAASKAF	0.9256	0.6948	0.5029	431.5	0.4704	21.24	1/982	1/7748
SNV	Breast	PIK3C2B_E1025K_8	HLA-A02:01	ILRTGLEKV	0.9145	0.7255	0.5089	144.3	0.4515	11.33	1/982	1/7748
SNV	Breast	PIK3C2B_E1025K_9	HLA-A03:01	GILRTGLEK	0.9903	0.651	0.2646	10.3	0.0989	11.33	1/982	1/7748
SNV	Breast	PIK3CA_E453K_3	HLA-A02:01	GLKDLLNPI	0.9672	0.5423	0.5138	157.89	0.4669	5.64	5/982	6/7748
SNV	Breast	PLA2G4F_D151N_1	HLA-B35:01	NSQELQVEF	0.9535	0.9285	0.2475	294.38	0.4222	6.92	1/982	1/7748
SNV	Breast	PLXNB2_F1425L_3	HLA-A02:01	KLLKAIKHQV	0.9761	0.5638	0.5286	185.52	0.4944	184.43	1/982	1/7748
SNV	Breast	RARS_D551N_6	HLA-A02:01	RLANINEEM	0.9925	0.6712	0.9594	29.09	0.2491	47.09	1/982	1/7748
SNV	Breast	RARS_D551N_6	HLA-C05:01	RLANINEEM	0.9765	0.9558	1.4067	294.85	0.3366	47.09	1/982	1/7748
SNV	Breast	RPUSD3_D176Y_9	HLA-B35:01	TATYCAVTY	0.9881	0.7951	0.0551	121.86	0.3277	11.79	1/982	1/7748
SNV	Breast	SBNO2_E449Q_7	HLA-B35:01	TPFRNFQEF	0.9978	0.9469	0.0435	1.56	0.0246	29.07	1/982	1/7748
SNV	Breast	SENP1_E637D_3	HLA-C04:01	VWDILHRKL	0.9876	0.9331	0.0185	8.73	0.0199	8.14	1/982	1/7748
SNV	Breast	SLC35F3_L382F_9	HLA-B35:01	LPEEWDVWF	0.9796	0.9564	0.279	24.96	0.1908	2.47	1/982	1/7748
SNV	Breast	SLC35F3_L382F_6	HLA-C04:01	EWDVWFIKL	0.957	0.7835	0.1155	273.12	0.1157	2.47	1/982	1/7748
SNV	Breast	SLC9A7_S323L_2	HLA-A02:01	KLVGIFLGI	0.9912	0.5725	0.0484	6.9	0.1281	6.47	1/982	1/7748
SNV	Breast	SLC9A7_S323L_10	HLA-C04:01	AFDAAAFFKL	0.9993	0.7463	0.2684	314.02	0.1223	6.47	1/982	1/7748
SNV	Breast	SORCS1_R93W_3	HLA-B35:01	RAWGTGASM	0.9278	0.8554	0.3068	72.86	0.2779	4.46	1/982	1/7748
SNV	Breast	SSBP4_S256L_4	HLA-B35:01	YSSLSPGSY	0.9057	0.8111	0.0794	222.3	0.3893	55.48	1/982	1/7748
SNV	Breast	SSBP4_S256L_6	HLA-B35:01	IPYSSLSPGSY	0.9982	0.7737	0.1739	288.31	0.4196	55.48	1/982	1/7748
SNV	Breast	SUDS3_S248F_8	HLA-B35:01	LPATPAEF	0.9935	0.9595	0.531	119.66	0.3258	30.99	1/982	1/7748
SNV	Breast	SUDS3_S248F_5	HLA-B35:01	TPAEFPAQRF	0.9953	0.9305	0.3098	54.13	0.2511	30.99	1/982	1/7748
SNV	Breast	SUPT16H_M147I_6	HLA-B35:01	FPGEFIKSW	0.9958	0.8943	0.1113	23.61	0.1871	43.1	1/982	1/7748
SNV	Breast	TAF5_S492L_10	HLA-A02:01	SLIAGGFADL	0.9862	0.6208	0.6242	169.49	0.479	3.45	1/982	1/7748
SNV	Breast	TAF5_S492L_4	HLA-C05:01	FADLTVRV	1	0.9922	0.0665	200.16	0.2888	3.45	1/982	1/7748
SNV	Breast	TEP1_S1382C_7	HLA-A02:01	TLYEQVCERL	0.9749	0.5351	0.9285	149.86	0.4579	15.13	1/982	1/7748
SNV	Breast	TGFBRAP1_L404V_6	HLA-B35:01	RSHPPVHEY	0.9633	0.9329	0.1113	79.5	0.2858	13.16	1/982	1/7748
SNV	Breast	THTPA_E164K_5	HLA-A02:01	ALVHKEAEV	0.9679	0.7878	0.4121	36.31	0.2706	4.21	1/982	1/7748
SNV	Breast	THUMPD2_R468T_1	HLA-A02:01	TMSPFGSLV	0.9776	0.5294	0.053	53.47	0.311	13.29	1/982	1/7748
SNV	Breast	TRMT10A_K239N_8	HLA-B35:01	LPLGNFVNM	0.9963	0.9751	0.0569	2.83	0.0549	5.5	1/982	1/7748
SNV	Breast	USP8_E871Q_8	HLA-C05:01	YSQQDSQQL	0.9995	0.9398	0.1109	446.35	0.389	6.56	1/982	1/7748
SNV	Breast	USP8_E871Q_6	HLA-C05:01	QQDSQQLLL	0.9999	0.9641	0.1445	52.65	0.1734	6.56	1/982	1/7748
SNV	Breast	WAC_S532Y_8	HLA-B35:01	SPGPNHTY	0.9697	0.6571	0.298	82.78	0.2894	27.87	1/982	1/7748
SNV	Breast	WAC_S532Y_10	HLA-B35:01	SPSPGPNHTY	0.9881	0.6095	0.0715	1.87	0.0339	27.87	1/982	1/7748
SNV	Breast	WDR17_D51N_5	HLA-B35:01	AASGNRFAY	0.981	0.8875	0.0629	4.8	0.0883	1.87	1/982	1/7748
SNV	Breast	XRN1_R837Q_7	HLA-B35:01	TIVKDIQAF	0.9347	0.8161	0.2889	31.91	0.2085	6.39	1/982	1/7748
SNV	Breast	ZC3HAV1_K726N_5	HLA-A02:01	FLSSNKYKL	0.9659	0.5263	0.0571	4.69	0.0995	12.36	1/982	2/7748
SNV	Breast	ZC3HAV1_K726N_5	HLA-C05:01	FLSSNKYKL	0.9788	0.945	0.7074	232.88	0.3068	12.36	1/982	1/7748
SNV	Breast	ZFYVE26_D1150N_9	HLA-B35:01	TPSGSRQMNY	0.9746	0.8809	0.279	173.6	0.3639	6.41	1/982	1/7748
SNV	Breast	ZMYND8_F494L_5	HLA-B35:01	SPKPLSPQL	0.7931	0.683	0.298	399.74	0.4608	30.16	1/982	1/7748
SNV	Breast	ZNF836_S885F_4	HLA-B35:01	MIHFGEKPY	0.9719	0.9339	0.1835	485.84	0.4854	8.22	1/982	1/7748
SNV	Breast	KIAA0100_L686V_10	HLA-A02:01	YLYQHVLATV	0.9988	0.6875	0.0211	17.99	0.2084	45.65	1/982	1/7748
SNV	Breast	MAPK10_R110G_5	HLA-C07:02	KRAYGELVL	0.9502	0.9776	0.2351	159.76	0.2441	2.93	1/982	1/7748
SNV	Breast	OAS2_V230M_6	HLA-B44:02	LELLTMYAW	0.995	0.746	0.0899	15.65	0.1357	12.21	1/982	1/7748
SNV	Breast	TMEM132C_V745M_7	HLA-A02:01	SQDEAVMSV	0.9788	0.6137	0.4709	6.11	0.1188	1.11	1/982	1/7748
SNV	Breast	TMEM132C_V745M_7	HLA-C05:01	SQDEAVMSV	0.9999	0.9879	0.0726	3.66	0.0453	1.11	1/982	1/7748
SNV	Breast	CAST_D431Y_9	HLA-B57:01	ATLKGTVPY	0.957	0.9811	0.8017	451.4	0.4762	24.04	1/982	1/7748
SNV	Breast	DHX57_E265Q_2	HLA-B57:01	IQRIQNRVW	0.9632	0.9614	0.8187	100.75	0.2832	8.15	1/982	1/7748
SNV	Breast	NDUFB6_F105Y_4	HLA-C06:02	SRIYPGDTIL	0.9812	0.9716	0.7927	299.88	0.1579	23.8	1/982	1/7748
SNV	Breast	PLCG2_V717I_1	HLA-B57:01	ISYYEKHSL	0.9737	0.9584	1.8624	121.56	0.2966	2.63	1/982	1/7748
SNV	Breast	TMEM120A_A162T_5	HLA-B57:01	RVTDTAFNF	0.9969	0.8932	0.3005	25.46	0.1799	42.75	1/982	1/7748
SNV	Breast	TMEM120A_A162T_1	HLA-B57:01	TAFNFLLVW	0.9984	0.9893	0.0145	19.95	0.1553	42.75	1/982	1/7748
SNV	Breast	PMVK_N183Y_9	HLA-C07:01	QRLEEQLEY	0.994	0.6454	0.1315	427.02	0.1635	370.58	1/982	1/7748
SNV	Breast	CMKLR1_A305V_9	HLA-A02:01	GLPLATALV	0.9527	0.5647	0.4709	275.73	0.559	8.7	1/982	1/7748
SNV	Breast	CSTF3_A324T_7	HLA-A02:01	KLFSDETANI	0.9961	0.7207	0.367	7.45	0.1345	15.06	1/982	1/7748
SNV	Breast	CSTF3_A324T_5	HLA-B35:01	FSDETANIY	0.7186	0.8716	0.218	6.08	0.0987	15.06	1/982	1/7748
SNV	Breast	DHRS4L2_S176C_3	HLA-B35:01	SPCPGFSPY	0.9955	0.7417	0.0069	5.45	0.0942	22.25	1/982	1/7748
SNV	Breast	DHRS4L2_S176C_4	HLA-B35:01	FSPCPGFSPY	0.9857	0.8079	0.3224	378.45	0.4539	22.25	1/982	1/7748
SNV	Breast	FAM120C_L765P_2	HLA-B35:01	LPMCCVLRY	0.9994	0.7347	0.0115	143.91	0.3447	4.1	1/982	1/7748
SNV	Breast	GRAMD1C_Q185L_9	HLA-A02:01	LLDKSLTRL	0.9855	0.5953	0.354	16.5	0.2011	2.29	1/982	1/7748
SNV	Breast	GRAMD1C_Q185L_10	HLA-A02:01	VLLDKSLTRL	0.9913	0.6602	0.5235	32.23	0.259	2.29	1/982	1/7748
SNV	Breast	GRAMD1C_Q185L_3	HLA-C07:02	TRLEFWQLL	0.9826	0.9917	0.0606	21.43	0.0794	2.29	1/982	1/7748
SNV	Breast	GRAMD1C_Q185L_9	HLA-C04:01	LLDKSLTRL	0.9999	0.6962	0.0496	488.03	0.1531	2.29	1/982	1/7748
SNV	Breast	PTPRA_Y588F_4	HLA-B35:01	NTDFVNASF	0.7865	0.905	0.5059	117.85	0.3242	47.49	1/982	1/7748
SNV	Breast	TUBA1C_H61R_2	HLA-C07:02	KRVPRAVFV	0.9054	0.9365	0.1356	29.74	0.0974	49.06	1/982	1/7748
SNV	Breast	ERG_V134E_3	HLA-C05:01	VIEPADPTL	0.9998	0.9375	0.051	6.09	0.0662	3.85	1/982	1/7748
SNV	Breast	GLB1_S543L_4	HLA-B15:10	AHNLSNYTL	0.9947	0.6291	0.0813	129.99	0.0131	39.59	1/982	1/7748
SNV	Breast	KLHL26_D525N_1	HLA-A02:01	NVLAVEYYV	0.9688	0.5732	0.3359	373.85	0.6113	3.97	1/982	1/7748
SNV	Breast	KLHL26_D525N_7	HLA-C05:01	HVDRCFNVL	0.9998	0.9783	0.0568	280.01	0.3301	3.97	1/982	1/7748
SNV	Breast	PPP1R15A_S259F_6	HLA-C05:01	GSDPRFWEY	0.9874	0.9634	0.6274	286.56	0.333	72.17	1/982	1/7748
SNV	Breast	UNC93B1_R312P_4	HLA-C05:01	AAYPPTEEI	0.894	0.9582	0.2781	44.19	0.1628	54	1/982	1/7748
SNV	Breast	ARID1B_Q810H_1	HLA-C07:02	HMHAGISSF	0.942	0.9459	0.1325	187.13	0.2621	41.08	1/982	1/7748
SNV	Breast	ASCC3_D896H_7	HLA-C17:01	FLESLAHNL	0.6807	0.9222	0.0813	25.15	0.0776	62.59	1/982	1/7748
SNV	Breast	BBX_D482Y_1	HLA-C17:01	YIESVIYTI	0.7862	0.6795	0.1923	34.83	0.0987	51.06	1/982	1/7748
SNV	Breast	CD1E_I163F_1	HLA-C07:02	FRAQNICKV	0.7672	0.8701	0.2455	321.22	0.3321	13.52	1/982	1/7748
SNV	Breast	CEP170B_P1334L_2	HLA-C17:01	MLSTPASTI	0.512	0.9465	0.3134	211.29	0.3134	58.78	1/982	1/7748
SNV	Breast	CYP27B1_S388F_10	HLA-A03:01	RLYPVVPGNFR	0.9993	0.5255	0.4351	22	0.1419	3.77	1/982	1/7748
SNV	Breast	GGT1_P411L_5	HLA-A30:01	KVRSLVSGI	0.9953	0.828	0.0425	53.54	0.0266	31.77	1/982	1/7748
SNV	Breast	GGT1_P411L_9	HLA-C07:02	YFGSKVRSL	0.6032	0.9593	0.1925	35.5	0.1083	31.77	1/982	1/7748
SNV	Breast	HMCN1_E518V_2	HLA-C17:01	SVPPPVIQV	0.8535	0.9527	0.1166	17.53	0.0589	4.43	1/982	1/7748
SNV	Breast	HTT_Q2575E_1	HLA-C17:01	EAWDPVPSL	0.7633	0.9726	0.1923	470.72	0.4662	26.02	1/982	1/7748
SNV	Breast	KAT6B_K377N_7	HLA-B07:02	SPGRGQNTKV	0.958	0.5181	0.3296	228.1	0.3328	48.11	1/982	1/7748
SNV	Breast	LARP6_V129I_2	HLA-A30:01	SIKLLTSFK	0.9964	0.7831	0.0596	268.5	0.1107	3.32	1/982	1/7748
SNV	Breast	LMOD1_T462S_9	HLA-B41:02	FELAGPRMSV	0.9863	0.576	0.3305	84.18	0.4432	23	1/982	1/7748
SNV	Breast	LPCAT2_M310I_6	HLA-A30:01	KVRNLIAEA	0.9981	0.9599	0.0639	14.78	0.0097	5.61	1/982	1/7748
SNV	Breast	LPCAT2_M310I_5	HLA-C07:02	VRNLIAEAL	0.8819	0.9723	0.1256	29.29	0.0966	5.61	1/982	1/7748
SNV	Breast	MUC16_A3879P_4	HLA-B07:02	TPSPPWITEM	0.9941	0.595	0.1427	6.57	0.0854	1.05	1/982	1/7748
SNV	Breast	PEX5L_E230K_9	HLA-A30:01	GGKSALNSK	0.9837	0.8459	0.3847	371.35	0.1411	3.35	1/982	1/7748
SNV	Breast	ROBO4_G257S_1	HLA-B07:02	SPKPRPAV	0.9998	0.5986	0.1792	37.87	0.1891	5.37	1/982	1/7748
SNV	Breast	ROBO4_G257S_1	HLA-B07:02	SPKPRPAVW	0.9915	0.7449	0.2422	33.24	0.1823	5.37	1/982	1/7748
SNV	Breast	ROBO4_G257S_1	HLA-B07:02	SPKPRPAVWL	0.993	0.8022	0.1228	3.25	0.0555	5.37	1/982	1/7748
SNV	Breast	SLC8A1_R703L_7	HLA-C17:01	RIAEMGLPI	0.5122	0.9706	0.9085	291.95	0.3682	2.1	1/982	1/7748
SNV	Breast	SRCAP_R3189Q_4	HLA-B07:02	TPRQRPGPRRL	0.9999	0.801	0.368	327.7	0.3647	69.36	1/982	1/7748
SNV	Breast	TDRD6_E494Q_8	HLA-C07:02	AFYDAQVQF	0.6361	0.9762	0.0399	5.01	0.0188	1.56	1/982	1/7748
SNV	Breast	TENM3_D1791N_5	HLA-C07:02	KIYDNHRKF	0.8988	0.8066	0.77	57.67	0.1456	1.14	1/982	1/7748
SNV	Breast	TENM3_D1791N_4	HLA-C07:02	IYDNHRKFL	0.6613	0.8641	0.0862	92.31	0.1864	1.14	1/982	1/7748
SNV	Breast	TLCD1_P70A_3	HLA-C17:01	QTADMLVEI	0.7392	0.9561	0.7097	114.25	0.2277	31.21	1/982	1/7748
SNV	Breast	UST_G11R_1	HLA-B07:02	RADPWPHGAPM	0.9994	0.8121	1.2677	18.27	0.1503	9.45	1/982	1/7748
SNV	Breast	ZFP30_F363L_3	HLA-A30:01	KTLSRGYHL	0.9862	0.6913	0.0571	153.61	0.0748	8.33	1/982	1/7748
SNV	Breast	ACTR10_L220V_5	HLA-C14:02	FVSDVKRGL	0.9943	0.9405	1.0719	349.57	0.9216	44.27	1/982	1/7748
SNV	Breast	CYP2U1_E202K_5	HLA-A02:01	KIIEKFKYV	0.9973	0.5076	0.2651	9.5	0.1545	8.27	1/982	1/7748
SNV	Breast	DDX10_F552L_2	HLA-A02:01	YLNEKMSIL	0.9954	0.5048	0.1759	2.22	0.0504	13.07	1/982	1/7748
SNV	Breast	DDX10_F552L_2	HLA-C05:01	YLNEKMSIL	0.999	0.954	0.3719	7.88	0.0764	13.07	1/982	1/7748
SNV	Breast	DDX10_F552L_2	HLA-C14:02	YLNEKMSIL	0.9943	0.9677	0.2981	21.68	0.2221	13.07	1/982	1/7748
SNV	Breast	DMD_R2218T_7	HLA-A02:01	ILSEFQTDL	0.9906	0.664	0.1953	6.6	0.1244	3.77	1/982	1/7748
SNV	Breast	DMD_R2218T_7	HLA-C05:01	ILSEFQTDL	0.9984	0.9123	0.6946	405.74	0.377	3.77	1/982	1/7748
SNV	Breast	DMD_R2218T_2	HLA-C05:01	QTDLNEFVL	0.9999	0.9744	0.1233	12.12	0.0998	3.77	1/982	1/7748
SNV	Breast	HIST1H2BC_E72Q_7	HLA-C05:01	FVNDIFQRI	0.9994	0.9634	0.3829	5.69	0.063	43.5	2/982	2/7748
SNV	Breast	HIST1H2BC_E72Q_7	HLA-C14:02	FVNDIFQRI	0.9913	0.9177	1.826	205.83	0.6982	43.5	1/982	1/7748
SNV	Breast	HTT_Q1395H_3	HLA-A02:01	VLHKVSTQL	0.9348	0.6697	0.2651	177.97	0.4873	16.92	1/982	1/7748
SNV	Breast	HTT_Q1395H_3	HLA-C14:02	VLHKVSTQL	0.711	0.9585	0.1593	97.51	0.4963	16.92	1/982	1/7748
SNV	Breast	LTBP1_C1188Y_2	HLA-C14:02	TYPDGFQL	0.9607	0.9786	0.3734	411.45	0.9887	27.93	1/982	1/7748
SNV	Breast	MAP4K4_L804F_1	HLA-C05:01	FSNGETESV	0.9997	0.8747	0.1623	387.31	0.3711	42.48	1/982	1/7748
SNV	Breast	SERPINB9_S5F_8	HLA-C14:02	LFNASGTF	0.9042	0.9749	1.0264	278.28	0.8279	46.25	1/982	1/7748
SNV	Breast	SLC46A3_M104I_7	HLA-C14:02	YGRKFPIIL	0.5708	0.938	0.7485	90.68	0.4785	27.3	1/982	1/7748
SNV	Breast	TM6SF1_H119D_3	HLA-C05:01	SADYLMYL	1	0.8339	0.1623	473.43	0.3965	9.85	1/982	1/7748
SNV	Breast	TM6SF1_H119D_7	HLA-C05:01	YWDGSADYL	0.9988	0.9085	0.1683	165.66	0.267	9.85	1/982	1/7748
SNV	Breast	TM6SF1_H119D_4	HLA-C05:01	GSADYLMYL	0.998	0.8897	1.0919	48.14	0.168	9.85	1/982	1/7748
SNV	Breast	TM6SF1_H119D_3	HLA-C05:01	SADYLMYLV	0.9994	0.8669	0.2751	22.35	0.1284	9.85	1/982	1/7748
SNV	Breast	TM6SF1_H119D_7	HLA-C14:02	YWDGSADYL	0.9209	0.9516	0.3235	26.15	0.2461	9.85	1/982	1/7748
SNV	Breast	TMEM120B_D157Y_3	HLA-C14:02	VTYEVFNFL	0.7936	0.9746	1.6491	287.08	0.8407	4.02	1/982	1/7748
SNV	Breast	TMEM120B_D157Y_2	HLA-C14:02	TYEVFNFLL	0.6277	0.9683	0.3734	282.82	0.8345	4.02	1/982	1/7748
SNV	Breast	ZDHHC9_L84F_5	HLA-C14:02	MATLFRTSF	0.6624	0.9715	0.5491	184.54	0.6667	33.14	1/982	1/7748
SNV	Breast	R3HDM2_N60D_4	HLA-A03:01	RTSDHGHARK	0.9956	0.5256	0.1526	15.42	0.1203	31.98	1/982	1/7748
SNV	Breast	RPL4_R33Q_2	HLA-C17:01	IQPDIVNFV	0.7538	0.782	1.108	392.27	0.4246	826.01	1/982	1/7748
SNV	Breast	SRMS_R147W_4	HLA-A02:02	FLIWPSESSL	0.9881	0.5921	0.1898	13.37	0.3071	12.83	1/982	1/7748
SNV	Breast	SRMS_R147W_3	HLA-C03:04	LIWPSESSL	0.9994	0.9892	0.2095	92.4	0.2663	12.83	1/982	1/7748
SNV	Breast	SYNE1_E6683Q_6	HLA-B15:01	HKRGVQLEY	0.7389	0.7046	0.7109	322.65	0.4439	1.82	1/982	1/7748
SNV	Breast	SYNE1_E6683Q_8	HLA-C03:04	RAHKRGVQL	0.97	0.9766	0.0424	17.13	0.1253	1.82	1/982	1/7748
SNV	Breast	CREB5_S230L_9	HLA-B07:02	SPQVQPMHL	0.9976	0.5389	0.0399	6.7	0.0867	1.57	1/982	1/7748
SNV	Breast	CREB5_S230L_3	HLA-C07:02	MHLEAKMRL	0.6316	0.9399	0.5371	191.28	0.2647	1.57	1/982	1/7748
SNV	Breast	ELF4_L483F_2	HLA-C07:02	IFSGLPQLL	0.6513	0.9077	0.1675	141.18	0.2307	20.68	1/982	1/7748
SNV	Breast	ELF4_L483F_3	HLA-C02:02	LIFSGLPQL	0.5533	0.9498	0.1755	173.31	0.2428	20.68	1/982	1/7748
SNV	Breast	KBTBD7_P370Q_4	HLA-C02:02	YTMQSPLTSF	0.9966	0.983	0.034	102.57	0.1619	5.64	1/982	1/7748
SNV	Breast	LCP2_R61W_5	HLA-B51:01	FPKLWVPI	0.999	0.8445	0.2334	67.82	0.1989	9.3	1/982	1/7748
SNV	Breast	LCP2_R61W_5	HLA-B51:01	FPKLWVPIL	0.9231	0.5756	0.031	10.8	0.0743	9.3	1/982	1/7748
SNV	Breast	MORF4L2_H227P_7	HLA-A02:01	QVYGAPPLL	0.9406	0.6159	0.9832	494.3	0.6729	322.98	1/982	1/7748
SNV	Breast	MORF4L2_H227P_5	HLA-C07:02	YGAPPLLRL	0.869	0.9772	0.7252	190.74	0.2643	322.98	1/982	1/7748
SNV	Breast	MORF4L2_H227P_7	HLA-C02:02	QVYGAPPLL	0.8059	0.987	0.2336	33.7	0.0755	322.98	1/982	1/7748
SNV	Breast	MORF4L2_H227P_5	HLA-C02:02	YGAPPLLRL	0.8447	0.9783	0.2844	30.88	0.0694	322.98	1/982	1/7748
SNV	Breast	TTLL3_M692I_3	HLA-C07:02	RRIGVRPAV	0.8537	0.9389	0.1528	53.06	0.1381	2.63	1/982	1/7748
SNV	Breast	RIF1_T205A_7	HLA-B39:06	VHLRGAAAL	0.9956	0.9744	0.0447	3.04	0.0254	15.75	1/982	1/7748
SNV	Breast	RIF1_T205A_1	HLA-C16:01	AALEMGMPL	0.954	0.9879	0.0756	11.04	0.1077	15.75	1/982	1/7748
SNV	Breast	NCOR1_P1029Q_1	HLA-C15:02	QTRPPPPLI	0.9934	0.8527	0.2746	11.15	0.0896	18.49	1/982	1/7748
SNV	Breast	SFMBT1_L414M_9	HLA-C15:02	ITAVRGSYM	0.9309	0.726	0.6441	86.12	0.3669	13.09	1/982	1/7748
SNV	Breast	ABCD1_I317M_9	HLA-C07:02	SYQDLASQM	0.84	0.9756	0.0168	20.25	0.0773	17.05	1/982	1/7748
SNV	Breast	BLVRA_S171Y_1	HLA-C07:02	YRLTWLVSL	0.9738	0.9738	0.0061	5.17	0.0195	128.67	1/982	1/7748
SNV	Breast	CALM2_D65H_2	HLA-C07:02	IHFPEFLTM	0.8737	0.8948	0.0365	25.81	0.0898	163.07	1/982	1/7748
SNV	Breast	CALM2_D65H_1	HLA-C07:02	HFPEFLTMM	0.8224	0.9671	0.1973	25.98	0.0902	163.07	1/982	1/7748
SNV	Breast	MYH9_L347F_7	HLA-C07:02	RVISGVFQL	0.9923	0.9433	1.51	111.86	0.2057	273.88	1/982	1/7748
SNV	Breast	PEAK1_P871L_4	HLA-B07:02	APFLPPRST	0.9869	0.7184	0.1843	138.72	0.29	3.54	1/982	1/7748
SNV	Breast	PIEZO1_G505R_9	HLA-B07:02	GPVSLRQLRL	0.9874	0.564	0.4801	399.63	0.3822	22.86	1/982	1/7748
SNV	Breast	SYNM_I861M_1	HLA-C07:02	MRYSWQDEI	0.8301	0.9101	0.206	46.93	0.1271	3.24	1/982	1/7748
SNV	Breast	TNRC18_E2942K_5	HLA-C07:02	YQDSKGLYY	0.7397	0.9004	0.1449	155.15	0.2409	25.3	1/982	1/7748
SNV	Breast	ZNF561_V234L_3	HLA-A03:01	RALTASSHLK	0.9977	0.7054	0.143	129.45	0.3066	8.65	1/982	1/7748
SNV	Breast	ERAP2_E564Q_6	HLA-C07:02	LRLQQQRFL	0.9365	0.9397	0.1925	156.95	0.2421	1.61	1/982	1/7748
SNV	Breast	ERAP2_E564Q_6	HLA-C07:01	LRLQQQRFL	0.9928	0.6283	0.0907	129.73	0.0996	1.61	1/982	1/7748
SNV	Breast	FAM188A_F158L_8	HLA-B08:01	ALIQKRSL	0.999	0.5248	0.2427	10.73	0.0411	21.96	1/982	1/7748
SNV	Breast	FAM188A_F158L_9	HLA-B08:01	HALIQKRSL	0.9922	0.5691	0.1046	70.79	0.143	21.96	1/982	1/7748
SNV	Breast	BTRC_R460T_7	HLA-C16:01	STCEFVTTL	0.9786	0.9871	0.0583	59.98	0.3209	7.01	1/982	1/7748
SNV	Breast	CENPE_I1493T_2	HLA-C16:01	TTNELRVNL	0.9948	0.9717	0.5381	48.76	0.2854	14.26	1/982	1/7748
SNV	Breast	CRYZ_C145S_8	HLA-C16:01	RALIHSASV	0.9521	0.9834	0.1509	13.35	0.1248	17.46	1/982	1/7748
SNV	Breast	CRYZ_C145S_1	HLA-C16:01	SVKAGESVL	0.7598	0.9834	1.405	313.74	0.7063	17.46	1/982	1/7748
SNV	Breast	HK3_C892G_7	HLA-B45:01	RELAPRGVV	0.993	0.9315	0.2844	166.65	0.2454	20.4	1/982	1/7748
SNV	Breast	HK3_C892G_5	HLA-B35:01	LAPRGVVTF	0.9766	0.8338	0.1294	306.73	0.4274	20.4	1/982	1/7748
SNV	Breast	HK3_C892G_5	HLA-C16:01	LAPRGVVTF	0.8443	0.9838	0.0969	43.56	0.2697	20.4	1/982	1/7748
SNV	Breast	IMMP2L_V27L_7	HLA-B35:01	VAVPVALTF	0.9964	0.8445	0.0101	3.56	0.0699	3.45	1/982	1/7748
SNV	Breast	IMMP2L_V27L_8	HLA-C16:01	FVAVPVAL	0.9977	0.9876	0.7424	492.77	0.8391	3.45	1/982	1/7748
SNV	Breast	IMMP2L_V27L_9	HLA-C16:01	FFVAVPVAL	0.9019	0.9872	1.0009	233.28	0.6201	3.45	1/982	1/7748
SNV	Breast	IMMP2L_V27L_7	HLA-C16:01	VAVPVALTF	0.8827	0.9865	0.0104	3.01	0.0225	3.45	1/982	1/7748
SNV	Breast	NAPA_H144Q_8	HLA-B35:01	DIEKAIAQY	0.8959	0.9509	0.6479	145.69	0.346	46.77	1/982	1/7748
SNV	Breast	PAN2_I278M_2	HLA-A02:01	AMTPLQVHV	0.9973	0.66	0.0751	3.29	0.0717	11.57	1/982	1/7748
SNV	Breast	PAN2_I278M_6	HLA-C16:01	RMMRAMTPL	0.9841	0.9793	1.9709	182.62	0.5577	11.57	1/982	1/7748
SNV	Breast	PIK3C2A_I214M_8	HLA-B35:01	HPQGSLPMY	0.9984	0.9304	0.0304	1.34	0.0184	10.42	1/982	1/7748
SNV	Breast	PIK3C2A_I214M_9	HLA-B35:01	FHPQGSLPMY	0.9656	0.9465	1.7979	17.9	0.1693	10.42	1/982	1/7748
SNV	Breast	PPT2_F238L_9	HLA-C16:01	VITPWQSSL	0.9685	0.9859	0.8351	53.02	0.2971	6.12	1/982	1/7748
SNV	Breast	RRNAD1_T338S_2	HLA-C16:01	RSHCYRAAL	0.9288	0.977	0.0639	74.35	0.3646	34.1	1/982	1/7748
SNV	Breast	TIAM1_P282R_8	HLA-B35:01	AAAEETPRY	0.9865	0.9295	0.3005	3.1	0.0593	2.25	1/982	1/7748
SNV	Breast	TRIP11_D462G_6	HLA-C16:01	STATRGISL	0.986	0.9824	0.1253	3.91	0.0349	10.17	1/982	1/7748
SNV	Breast	KMT2C_A3103S_8	HLA-B08:01	IMKAKMVSL	0.9992	0.7297	0.0004	1.68	0.0044	10.06	1/982	1/7748
SNV	Breast	CEBPZ_S743L_2	HLA-A02:01	YLGDPLQDFTL	0.9983	0.5551	0.783	10.1	0.1594	52.33	1/982	1/7748
SNV	Breast	CEBPZ_S743L_2	HLA-B15:01	YLGDPLQDF	0.9782	0.9238	0.3726	322.9	0.4441	52.33	1/982	1/7748
SNV	Breast	MVB12B_A303T_7	HLA-A31:01	RTEQSATAR	0.937	0.7795	0.5172	297.89	0.3494	8.97	1/982	1/7748
SNV	Breast	RABEP2_L500F_9	HLA-B15:01	QQEQSKAQF	0.9818	0.822	0.5249	398.6	0.4799	56.25	1/982	1/7748
SNV	Breast	RABEP2_L500F_10	HLA-B15:01	VQQEQSKAQF	0.9996	0.7429	0.393	90.72	0.2775	56.25	1/982	1/7748
SNV	Breast	ABAT_R475H_4	HLA-C07:02	IRFHPTLVF	0.8692	0.9441	0.0037	3.61	0.012	1.12	1/982	1/7748
SNV	Breast	ABAT_R475H_4	HLA-C07:01	IRFHPTLVF	0.9991	0.7077	0.0077	7.09	0.0129	1.12	1/982	1/7748
SNV	Breast	AFAP1_T652S_8	HLA-B07:02	KALAGGVSL	0.9357	0.5253	0.1286	135.3	0.288	20.75	1/982	1/7748
SNV	Breast	NAF1_R255Q_8	HLA-C07:02	AHPFYVLQF	0.7436	0.932	0.2671	293.95	0.319	6.93	1/982	1/7748
SNV	Breast	ST3GAL3_L30V_6	HLA-C07:02	YSAWKVHLL	0.9915	0.9444	1.1223	444.56	0.3801	13.69	1/982	1/7748
SNV	Breast	TBC1D2B_D619Y_5	HLA-C07:02	VRALYLKTL	0.9704	0.9308	0.1631	32.67	0.1029	10.65	1/982	1/7748
SNV	Breast	TBC1D2B_D619Y_5	HLA-C07:01	VRALYLKTL	0.9959	0.5723	0.082	109.66	0.0909	10.65	1/982	1/7748
SNV	Breast	NFKB1_M435I_9	HLA-B08:01	NAGMKHGTI	0.8637	0.7089	0.7619	195.98	0.2312	37.82	1/982	1/7748
SNV	Breast	PIK3CA_E542K_8	HLA-C12:03	STRDPLSKI	0.8371	0.8875	0.252	111.94	0.5523	15.24	4/982	13/7748
SNV	Breast	SRM_A141V_6	HLA-C12:03	FLPGMVIGY	0.5572	0.9804	1.0589	328.66	0.9104	136.53	1/982	1/7748
SNV	Breast	TBX15_T269M_9	HLA-B35:03	VPVGDGVKM	0.9632	0.7486	0.0311	3.73	0.0196	16	1/982	1/7748
SNV	Breast	TBX15_T269M_2	HLA-C12:03	KMFNFPETV	0.8149	0.9912	0.4773	72.61	0.4446	16	1/982	1/7748
SNV	Breast	URB2_I1415V_3	HLA-A02:20	GSVDDLPTV	0.8293	0.511	0.3654	274.27	0.3756	14.97	1/982	1/7748
SNV	Breast	URB2_I1415V_2	HLA-C03:04	SVDDLPTVL	0.9989	0.985	0.033	3.64	0.037	14.97	1/982	1/7748
SNV	Breast	URB2_I1415V_2	HLA-C12:02	SVDDLPTVL	0.7636	0.9615	0.1325	34.52	0.0888	14.97	1/982	1/7748
SNV	Breast	ZFP36L2_L25F_4	HLA-C03:04	LANFNLNNM	0.999	0.9915	0.2326	160.03	0.3308	289.56	1/982	1/7748
SNV	Breast	ZFP36L2_L25F_4	HLA-C12:02	LANFNLNNM	0.9271	0.984	0.2195	332.48	0.3848	289.56	1/982	1/7748
SNV	Breast	UBE2O_A1014S_4	HLA-C07:02	IYPSVPPHF	0.7295	0.9509	0.028	22.06	0.0808	20.91	1/982	1/7748
SNV	Breast	UBE2O_A1014V_4	HLA-C07:02	IYPVVPPHF	0.76	0.9344	0.0969	43.21	0.1211	20.91	1/982	1/7748
SNV	Breast	ABCA12_F849L_8	HLA-C16:01	WMDKSPLLM	0.9848	0.9795	0.4145	460.52	0.8172	1.16	1/982	1/7748
SNV	Breast	ABCA12_F849L_5	HLA-C16:01	KSPLLMNSF	0.7661	0.974	0.6358	478.4	0.8296	1.16	1/982	1/7748
SNV	Breast	ADAMTS12_S135F_9	HLA-B38:01	SHVKMMASF	0.9773	0.9892	0.0352	130.66	0.0823	11.69	1/982	1/7748
SNV	Breast	ADAMTS12_S135F_3	HLA-C16:01	ASFAPLCHL	0.9039	0.988	0.0357	172.35	0.5437	11.69	1/982	1/7748
SNV	Breast	ADAMTS12_S135F_3	HLA-C12:03	ASFAPLCHL	0.9655	0.9893	0.0274	121.06	0.5733	11.69	1/982	1/7748
SNV	Breast	ARHGAP31_S487F_6	HLA-C16:01	KALNIFEPF	0.9222	0.9687	0.1548	185	0.5608	17.6	1/982	1/7748
SNV	Breast	ARHGEF12_D837H_5	HLA-C16:01	SNLEHILQL	0.9806	0.9849	0.5074	487.66	0.8358	27.9	1/982	1/7748
SNV	Breast	ARHGEF12_D837H_8	HLA-C12:03	KIFSNLEHI	0.9665	0.9763	0.4284	411.29	0.995	27.9	1/982	1/7748
SNV	Breast	ARHGEF12_D837H_5	HLA-C12:03	SNLEHILQL	0.9679	0.9866	0.4773	418.38	1.0016	27.9	1/982	1/7748
SNV	Breast	BUB3_D117G_4	HLA-C16:01	GSWGQTVKL	0.8843	0.9809	0.4605	163.98	0.5318	48.8	1/982	1/7748
SNV	Breast	BUB3_D117G_4	HLA-C12:03	GSWGQTVKL	0.913	0.9654	0.5679	242.68	0.8057	48.8	1/982	1/7748
SNV	Breast	CCDC173_K79N_6	HLA-B44:03	AERKANKEM	0.9907	0.9558	0.3351	165.58	0.3222	1.29	1/982	1/7748
SNV	Breast	CMAS_S348L_6	HLA-B44:03	MEVSVLDKL	0.9923	0.9253	0.1039	32.62	0.1887	48.62	1/982	1/7748
SNV	Breast	CMAS_S348L_3	HLA-C16:01	SVLDKLAVV	0.9541	0.9797	1.3599	55.01	0.3033	48.62	1/982	1/7748
SNV	Breast	CMAS_S348L_3	HLA-C12:03	SVLDKLAVV	0.924	0.9775	0.5537	21.83	0.2228	48.62	1/982	1/7748
SNV	Breast	DAXX_V348I_5	HLA-B38:01	YRPGIDPAL	0.9942	0.9461	0.0934	71.36	0.0568	80.48	1/982	1/7748
SNV	Breast	DLC1_E313K_3	HLA-C16:01	KAKDGMQCL	0.812	0.9652	0.2496	42.21	0.2653	13.63	1/982	1/7748
SNV	Breast	DLC1_E313K_3	HLA-C12:03	KAKDGMQCL	0.9583	0.9678	0.1782	85.56	0.4829	13.63	1/982	1/7748
SNV	Breast	DONSON_G299E_2	HLA-B38:01	AESDLITAL	0.8069	0.9474	0.1906	439.45	0.1673	14.33	1/982	1/7748
SNV	Breast	DONSON_G299E_2	HLA-B44:03	AESDLITAL	0.9914	0.9458	0.0816	1.79	0.0327	14.33	1/982	1/7748
SNV	Breast	DONSON_G299E_2	HLA-B44:03	AESDLITALI	0.9967	0.9294	0.1633	54.77	0.2358	14.33	1/982	1/7748
SNV	Breast	EFCAB6_R18Q_7	HLA-C16:01	RSHPHTQKF	0.943	0.9578	0.0005	3.72	0.0329	2.44	1/982	1/7748
SNV	Breast	EFCAB6_R18Q_7	HLA-C12:03	RSHPHTQKF	0.9478	0.9485	0.0096	5.29	0.0637	2.44	1/982	1/7748
SNV	Breast	FILIP1_D658N_1	HLA-B44:03	NEYDQLEQKF	0.9997	0.8332	0.0365	2	0.0379	3.11	1/982	1/7748
SNV	Breast	ILK_N202K_3	HLA-B44:03	NEKHSGELW	0.9993	0.9779	0.0164	1.88	0.035	18.51	1/982	1/7748
SNV	Breast	ILK_N202K_4	HLA-B44:03	LNEKHSGELW	0.8991	0.9835	1.8766	241.1	0.3517	18.51	1/982	1/7748
SNV	Breast	KIAA0825_L202V_2	HLA-C16:01	FVYPESEVI	0.9595	0.9728	0.4985	12.51	0.119	1.09	1/982	1/7748
SNV	Breast	KIAA0825_L202V_2	HLA-C12:03	FVYPESEVI	0.9966	0.9824	0.1172	3.57	0.0354	1.09	1/982	1/7748
SNV	Breast	KIAA1456_L330V_6	HLA-C16:01	RAPGTVKHL	0.8118	0.9841	0.1285	105.92	0.4371	3.38	1/982	1/7748
SNV	Breast	KIAA1456_L330V_6	HLA-C12:03	RAPGTVKHL	0.8938	0.9713	0.1451	100.3	0.523	3.38	1/982	1/7748
SNV	Breast	KLHL31_G131A_7	HLA-C16:01	IAYAYTAKL	0.9729	0.9599	0.0116	2.15	0.013	1.01	1/982	1/7748
SNV	Breast	KLHL31_G131A_5	HLA-C16:01	YAYTAKLTL	0.9978	0.9411	0.001	1.24	0.0032	1.01	1/982	1/7748
SNV	Breast	KLHL31_G131A_3	HLA-C16:01	YTAKLTLSL	0.9891	0.9668	0.0026	2.4	0.0162	1.01	1/982	1/7748
SNV	Breast	KLHL31_G131A_7	HLA-C12:03	IAYAYTAKL	0.9967	0.986	0.0041	2.05	0.0105	1.01	1/982	1/7748
SNV	Breast	KLHL31_G131A_5	HLA-C12:03	YAYTAKLTL	0.9997	0.967	0.0006	1.22	0.0028	1.01	1/982	1/7748
SNV	Breast	KLHL31_G131A_3	HLA-C12:03	YTAKLTLSL	0.9982	0.9748	0.0055	2.45	0.0187	1.01	1/982	1/7748
SNV	Breast	KLHL31_G131A_2	HLA-C12:03	TAKLTLSLY	0.7066	0.9621	0.327	329.04	0.9109	1.01	1/982	1/7748
SNV	Breast	NF1_L2073V_1	HLA-C12:03	VMWDDIAIL	0.9912	0.9785	0.8094	378.02	0.9632	8.42	1/982	1/7748
SNV	Breast	PANK4_E646Q_7	HLA-C16:01	GVFPFVQEL	0.9916	0.9744	0.1548	5.08	0.0483	19.4	1/982	1/7748
SNV	Breast	PANK4_E646Q_7	HLA-C12:03	GVFPFVQEL	0.9965	0.9771	0.065	3.75	0.0378	19.4	1/982	1/7748
SNV	Breast	PCDHGC3_G99R_1	HLA-C16:01	RTLPSCTVTL	0.9961	0.9913	0.5968	209.57	0.5908	19.23	1/982	1/7748
SNV	Breast	PIK3CA_C420R_4	HLA-B44:03	EEHRPLAW	0.9998	0.9264	0.131	197.13	0.3358	10.4	2/982	2/7748
SNV	Breast	PIK3CA_C420R_5	HLA-B44:03	KEEHRPLAW	0.9928	0.957	0.0604	4.58	0.0834	10.4	2/982	2/7748
SNV	Breast	PIK3CA_C420R_6	HLA-B44:03	AKEEHRPLAW	0.7691	0.9618	0.9303	34.41	0.1932	10.4	2/982	2/7748
SNV	Breast	PIK3CA_E545K_5	HLA-B44:03	SEITKQEKDF	0.9989	0.8114	0.0872	10.32	0.1253	10.4	6/982	18/7748
SNV	Breast	PNISR_I566M_9	HLA-C12:03	HSRSRSPTM	0.8921	0.958	0.1451	21.92	0.2234	38.92	1/982	1/7748
SNV	Breast	PTPRO_E482Q_7	HLA-B44:03	KESQRLQKQY	0.9991	0.8035	0.0816	5.79	0.0944	2.79	1/982	1/7748
SNV	Breast	RAD9A_S266L_9	HLA-B38:01	GHFVLATLL	0.9931	0.9943	0.0244	59.15	0.0511	27.84	1/982	1/7748
SNV	Breast	RANBP2_E2171K_1	HLA-B44:03	KEMKSGLKDF	0.9956	0.8031	0.083	5.14	0.0891	38.44	1/982	1/7748
SNV	Breast	RANBP2_E2171K_7	HLA-C16:01	KLIQRAKEM	0.7541	0.9689	0.8221	208.32	0.5893	38.44	1/982	1/7748
SNV	Breast	RANBP2_E2171K_3	HLA-C16:01	RAKEMKSGL	0.5767	0.9839	0.915	172.44	0.5439	38.44	1/982	1/7748
SNV	Breast	RANBP2_E2171K_7	HLA-C12:03	KLIQRAKEM	0.7451	0.9824	0.8424	466.62	1.0465	38.44	1/982	1/7748
SNV	Breast	RANBP2_E2171K_3	HLA-C12:03	RAKEMKSGL	0.9117	0.9815	0.8996	89.96	0.4946	38.44	1/982	1/7748
SNV	Breast	REPS1_G33R_6	HLA-C16:01	KVVVNRRVL	0.648	0.97	1.3599	83.25	0.3876	15.93	1/982	1/7748
SNV	Breast	REPS1_G33R_4	HLA-C16:01	VVNRRVLEL	0.9833	0.9816	0.4239	11.26	0.1095	15.93	1/982	1/7748
SNV	Breast	REPS1_G33R_4	HLA-C12:03	VVNRRVLEL	0.9937	0.9565	0.5413	40.36	0.331	15.93	1/982	1/7748
SNV	Breast	SEMA3E_E364K_5	HLA-B44:03	KEGPKYHW	0.9995	0.9545	0.5429	400.18	0.3914	3.68	1/982	1/7748
SNV	Breast	SF3B1_K666N_4	HLA-C12:03	TGINIVQQI	0.6466	0.9698	1.2835	453.47	1.0348	151.06	1/982	1/7748
SNV	Breast	SORBS3_R230Q_1	HLA-B44:03	QEKVDNVW	0.9995	0.9811	0.3661	484.78	0.4093	75.81	1/982	1/7748
SNV	Breast	SRGAP3_E152K_1	HLA-C16:01	KLLKVTNEL	0.8234	0.9792	1.2719	76.24	0.3697	3.08	1/982	1/7748
SNV	Breast	TAOK2_V301M_6	HLA-C16:01	RTKDAMREL	0.98	0.9742	0.3356	9.63	0.0967	48.35	1/982	1/7748
SNV	Breast	TAOK2_V301M_6	HLA-C12:03	RTKDAMREL	0.9735	0.9767	0.327	10.52	0.1287	48.35	1/982	1/7748
SNV	Breast	TMEM260_D577H_7	HLA-B44:03	EEYGRFHPSSW	0.9996	0.9853	0.0816	3.89	0.0756	9.02	1/982	1/7748
SNV	Breast	UMPS_E391K_1	HLA-B44:03	KEHSEFVVGF	0.9974	0.9534	0.0655	11.63	0.1312	16.37	1/982	1/7748
SNV	Breast	UMPS_E391K_4	HLA-C16:01	RMAKEHSEF	0.826	0.9738	1.832	348.52	0.7361	16.37	1/982	1/7748
SNV	Breast	UMPS_E391K_3	HLA-C12:03	MAKEHSEFV	0.9602	0.9863	0.08	244.33	0.8081	16.37	1/982	1/7748
SNV	Breast	WDFY4_D2429N_8	HLA-C12:03	FTLSPTGNV	0.8829	0.9885	0.4442	261.27	0.831	4.65	1/982	1/7748
SNV	Breast	WDFY4_D2429N_8	HLA-C12:03	FTLSPTGNVY	0.9164	0.9771	0.1836	359.95	0.9447	4.65	1/982	1/7748
SNV	Breast	ZNF541_I1210M_7	HLA-C16:01	YIWKKMMKF	0.8048	0.9467	0.7219	129.78	0.479	6.16	1/982	1/7748
SNV	Breast	ZNF541_I1210M_7	HLA-C12:03	YIWKKMMKF	0.8415	0.9803	0.9805	61.75	0.4067	6.16	1/982	1/7748
SNV	Breast	DNAH17_E441G_5	HLA-A02:01	FLKLGKIEL	0.9593	0.8064	0.9635	135.11	0.4402	1.55	1/982	1/7748
SNV	Breast	ITPKC_T197A_2	HLA-C03:04	WAHQNSSSL	0.9995	0.9582	0.0262	3.78	0.038	50.37	1/982	1/7748
SNV	Breast	PLEKHG6_T396M_3	HLA-A02:01	DLMSPMLGV	0.9374	0.7132	0.6281	202.91	0.5093	11.34	1/982	1/7748
SNV	Breast	PLEKHG6_T396M_6	HLA-C03:04	STLDLMSPM	0.9976	0.9855	0.7448	356.08	0.4477	11.34	1/982	1/7748
SNV	Breast	ENDOD1_A62T_4	HLA-B44:03	AEGTERFATLY	0.9997	0.9836	0.2205	303.13	0.3696	37.19	1/982	1/7748
SNV	Breast	ENDOD1_A62T_6	HLA-B15:03	QRAEGTERF	0.7177	0.9108	0.967	22.97	0.2816	37.19	1/982	1/7748
SNV	Breast	ENDOD1_A62T_6	HLA-C07:01	QRAEGTERF	0.9966	0.8196	0.1053	211.66	0.118	37.19	1/982	1/7748
SNV	Breast	CLK2_I215V_10	HLA-A02:01	RLEINVLEKV	0.9662	0.6609	1.1118	395.42	0.6237	56.57	1/982	1/7748
SNV	Breast	KCNMA1_R729H_3	HLA-C03:04	RVHGNVDTL	0.9707	0.9698	0.089	14.18	0.1065	4.94	1/982	1/7748
SNV	Breast	SMG7_S99R_3	HLA-C03:04	AARGFYTQL	0.9952	0.9821	0.1189	64.15	0.228	39.57	1/982	1/7748
SNV	Breast	TNK2_A921T_7	HLA-C03:04	AALDPKTNF	0.9978	0.9864	0.2379	61.67	0.2239	40.07	1/982	1/7748
SNV	Breast	ZNF689_E60K_1	HLA-C03:04	KTYGHLGAL	0.9925	0.9958	0.0912	19.59	0.1365	10.98	1/982	1/7748
SNV	Breast	ARTN_V196I_6	HLA-C06:02	TRYEAISF	0.9302	0.9905	0.6804	338.02	0.169	4.57	1/982	1/7748
SNV	Breast	DDX11_A571E_7	HLA-A02:05	HIQGFLEAL	0.9621	0.5301	0.4073	182.74	0.332	7.36	1/982	1/7748
SNV	Breast	GPRASP2_T734M_4	HLA-B14:01	NARMKFHVL	0.9637	0.5675	0.3005	241.15	0.0613	3.29	1/982	1/7748
SNV	Breast	GRIPAP1_R42L_3	HLA-A02:14	SLLQKVAYL	0.9882	0.7494	0.2516	57.62	0.1524	26.58	1/982	1/7748
SNV	Breast	GRIPAP1_R42L_3	HLA-A02:05	SLLQKVAYL	0.9906	0.5513	0.2074	40.04	0.1696	26.58	1/982	1/7748
SNV	Breast	TP53_L194R_8	HLA-A02:14	GLAPPQHRI	0.9729	0.8102	0.9029	383.42	0.3351	82.34	1/982	1/7748
SNV	Breast	TP53_L194R_8	HLA-A02:05	GLAPPQHRI	0.9904	0.7508	0.6923	33.87	0.1584	82.34	1/982	1/7748
SNV	Breast	ULBP2_L150V_9	HLA-C04:01	SFDGQIFLV	0.9984	0.9411	0.0096	5.42	0.0132	8.07	1/982	1/7748
SNV	Breast	ULBP2_L150V_9	HLA-C04:01	SFDGQIFLVF	0.9996	0.8751	0.0799	27.51	0.0422	8.07	1/982	1/7748
SNV	Breast	AP1G1_F686Y_1	HLA-A02:02	YLLDGLSSQPL	0.9989	0.6814	1.1434	4.76	0.1454	36.06	1/982	1/7748
SNV	Breast	ARF1_A137T_1	HLA-B44:03	TEITDKLGL	0.9871	0.8363	0.2446	17.23	0.1506	1027.68	1/982	1/7748
SNV	Breast	BCORL1_A1661S_6	HLA-C14:02	FYRQVSSSQL	0.9526	0.9199	0.3094	173.28	0.6486	11.49	1/982	1/7748
SNV	Breast	CHD6_M2520I_1	HLA-A02:02	IMLPGMAAV	0.9977	0.8214	0.0039	2.14	0.0642	6.47	1/982	1/7748
SNV	Breast	CHD6_M2520I_8	HLA-B15:16	STLSMLPIM	0.9379	0.5948	0.5274	66.75	0.3949	6.47	1/982	1/7748
SNV	Breast	FUBP3_A31G_7	HLA-B15:16	RVRQIAGKI	0.7894	0.7385	1.9195	417.59	0.9719	30.72	1/982	1/7748
SNV	Breast	GEMIN4_R504C_8	HLA-B15:16	KVLAGILCSW	0.9947	0.989	0.119	169.13	0.6366	22.9	1/982	1/7748
SNV	Breast	GRIN2A_I775T_2	HLA-B15:16	QTDLALLQF	0.7727	0.9709	0.3249	60.05	0.3722	1.53	1/982	1/7748
SNV	Breast	HPS3_A874T_5	HLA-C04:01	SFDITSII	0.9999	0.5151	0.0616	350.09	0.1287	22.21	1/982	1/7748
SNV	Breast	HPS3_A874T_5	HLA-C04:01	SFDITSIIPF	0.9992	0.5834	0.1794	271.84	0.1155	22.21	1/982	1/7748
SNV	Breast	IGHA1_Q287K_5	HLA-B44:03	QEPSKGTTTF	0.9513	0.8967	0.1611	16.83	0.1495	1772.96	1/982	1/7748
SNV	Breast	INO80D_P611T_7	HLA-B44:03	NEITDITHDL	0.9708	0.8935	0.3236	133.35	0.3052	3.52	1/982	1/7748
SNV	Breast	ITPRIP_E320Q_2	HLA-A02:02	YQFDLAFGQL	0.989	0.8728	0.7935	157.53	0.7978	24.35	1/982	1/7748
SNV	Breast	ITPRIP_E320Q_8	HLA-B15:16	KGIAHKYQF	0.9857	0.5623	0.4145	346.24	0.89	24.35	1/982	1/7748
SNV	Breast	ITPRIP_E320Q_1	HLA-C04:01	QFDLAFGQL	0.9986	0.9852	0.0146	9.6	0.0213	24.35	1/982	1/7748
SNV	Breast	ITPRIP_E320Q_1	HLA-C14:02	QFDLAFGQL	0.931	0.9916	0.2691	199.9	0.6898	24.35	1/982	1/7748
SNV	Breast	KCMF1_D298A_6	HLA-B15:16	LTRLNAPKM	0.9205	0.611	0.6555	47.92	0.3237	40.05	1/982	1/7748
SNV	Breast	KLHL23_T338K_6	HLA-B44:03	IEALDKVWIY	0.9972	0.7841	0.2241	55.69	0.2374	14.57	1/982	1/7748
SNV	Breast	SPAG9_D43N_3	HLA-C14:02	RYNEEVVKEL	0.9891	0.9661	0.4269	105.98	0.5174	24.11	1/982	1/7748
SNV	Breast	SPSB4_P261L_4	HLA-B15:16	SSLLLPQSL	0.9794	0.8124	0.4789	177.55	0.654	1.26	1/982	1/7748
SNV	Breast	SPSB4_P261L_9	HLA-C14:02	RLQDISSLL	0.9873	0.9669	0.5014	57.99	0.3785	1.26	1/982	1/7748
SNV	Breast	SUV39H1_V45F_6	HLA-C04:01	LYDFEFEYL	0.9985	0.7125	0.0083	8.55	0.0196	21.27	1/982	1/7748
SNV	Breast	SUV39H1_V45F_6	HLA-C14:02	LYDFEFEYL	0.9247	0.9579	0.2381	241.31	0.7672	21.27	1/982	1/7748
SNV	Breast	TRRAP_F154S_2	HLA-B15:16	HSLDFVKQI	0.9937	0.6134	0.4512	13.56	0.1289	40.61	1/982	1/7748
SNV	Breast	TRRAP_F154S_6	HLA-B44:03	QEIHHSLDF	0.9952	0.8656	0.012	2.89	0.0579	40.61	1/982	1/7748
SNV	Breast	TRRAP_F154S_8	HLA-C14:02	ITQEIHHSL	0.9931	0.9643	0.4681	71.01	0.4185	40.61	1/982	1/7748
SNV	Breast	ADAMTS1_A831V_8	HLA-C03:04	QVLTVGNVL	0.9909	0.9882	0.9129	401.97	0.4673	2.11	1/982	1/7748
SNV	Breast	ADCY3_A111T_3	HLA-C03:04	AVTGIGLVL	0.9964	0.9959	0.2805	33.61	0.1727	2.14	1/982	1/7748
SNV	Breast	ARHGAP32_R606L_9	HLA-C03:04	LTLEEAQAL	0.9994	0.9815	0.1116	40.98	0.1867	5.31	1/982	1/7748
SNV	Breast	BCL6B_A106V_5	HLA-A02:01	RLSPVTAPAV	0.9964	0.5488	0.3346	39.95	0.2799	4.16	1/982	1/7748
SNV	Breast	BCL6B_A106V_3	HLA-C03:04	SPVTAPAVL	0.9842	0.9811	1.1387	496.67	0.5017	4.16	1/982	1/7748
SNV	Breast	EVA1C_E320K_5	HLA-C03:04	RAHPKRAAL	0.9802	0.9854	0.0457	7.27	0.0648	9.04	1/982	1/7748
SNV	Breast	SPNS1_D177E_8	HLA-C03:04	IAPTLIAEL	0.9995	0.9667	0.0536	19	0.1339	3.28	1/982	1/7748
SNV	Breast	TAOK1_I237V_1	HLA-C03:04	VAQNESPTL	0.9994	0.9788	0.089	16.46	0.1213	3.2	1/982	1/7748
SNV	Breast	ZC3H14_C261Y_3	HLA-A02:01	RLYEPEVLNSL	0.9994	0.6129	1.1014	56.59	0.3183	4.47	1/982	1/7748
SNV	Breast	DDX18_R539H_9	HLA-B35:01	RPEELGFLHY	0.9893	0.8898	0.3714	65.63	0.2685	11.93	1/982	1/7748
SNV	Breast	FAM20C_F391L_3	HLA-C16:01	AALLPDLSL	0.9375	0.9844	0.21	32.17	0.2248	21.45	1/982	1/7748
SNV	Breast	HTT_S273L_5	HLA-C16:01	TAAGLAVSI	0.9015	0.9871	0.4056	47.12	0.2807	14.37	1/982	1/7748
SNV	Breast	MFAP4_G53S_9	HLA-B35:01	YAQGYQSDSVY	0.9893	0.8028	1.9358	430.72	0.4702	60.58	1/982	1/7748
SNV	Breast	PSORS1C1_L21F_4	HLA-B35:01	TPAFQGPQL	0.9431	0.9491	0.291	37.25	0.2209	4.48	1/982	1/7748
SNV	Breast	CLCN5_V202M_9	HLA-C16:01	KTITLVLAM	0.9722	0.9687	0.0891	8.22	0.0833	7.57	1/982	1/7748
SNV	Breast	CLCN5_V202M_3	HLA-C16:01	LAMSSGLSL	0.9781	0.9924	0.0165	2.32	0.0154	7.57	1/982	1/7748
SNV	Breast	ETS2_V249I_9	HLA-C16:01	KSRLSSVSI	0.8081	0.9347	1.9504	241.3	0.6299	19.8	1/982	1/7748
SNV	Breast	ETS2_V249I_7	HLA-C16:01	RLSSVSITY	0.5848	0.9336	1.346	163.71	0.5314	19.8	1/982	1/7748
SNV	Breast	SLC13A2_V58I_6	HLA-A02:01	ALPLAITAL	0.9392	0.5986	0.4654	325.05	0.5856	3.36	1/982	1/7748
SNV	Breast	SLC13A2_V58I_1	HLA-C16:01	ITALFPLIL	0.9484	0.9301	0.4704	70.14	0.3528	3.36	1/982	1/7748
SNV	Breast	ATAD2B_S916L_2	HLA-A30:01	ALMAPPRRK	0.9759	0.8763	0.4401	377.18	0.1434	7.1	1/982	1/7748
SNV	Breast	BRCA2_D596N_4	HLA-A30:01	AIHNETSYK	0.984	0.8586	0.0835	179.36	0.0825	3.17	1/982	1/7748
SNV	Breast	BRCA2_D596N_5	HLA-B15:03	YAIHNETSY	0.9844	0.8484	0.07	12.76	0.1908	3.17	1/982	1/7748
SNV	Breast	CRLF1_Q269E_4	HLA-C02:10	FLFEAKYQI	0.653	0.9897	0.9605	73.81	0.1345	46.36	1/982	1/7748
SNV	Breast	IGSF10_H1735D_4	HLA-B14:02	DHLDVTLSV	0.9987	0.7346	0.078	260.63	0.0634	2.27	1/982	1/7748
SNV	Breast	IGSF10_H1735D_6	HLA-C08:02	GTDHLDVTL	0.9999	0.9516	0.0535	168.98	0.0905	2.27	1/982	1/7748
SNV	Breast	IGSF10_H1735D_3	HLA-C08:02	HLDVTLSVV	0.9976	0.9953	0.0771	470.09	0.1366	2.27	1/982	1/7748
SNV	Breast	MAST4_R2418T_7	HLA-A30:01	KGFPEATGK	0.9749	0.9631	0.1164	404.67	0.1527	6.03	1/982	1/7748
SNV	Breast	MAST4_R2418T_1	HLA-A30:01	TGKGPGPQK	0.976	0.8723	0.624	467.27	0.1685	6.03	1/982	1/7748
SNV	Breast	MAST4_R2418T_2	HLA-A30:01	ATGKGPGPQK	0.9583	0.8776	0.8435	345.83	0.1309	6.03	1/982	1/7748
SNV	Breast	MLF1_H52L_9	HLA-C08:02	ISDGRGRAL	0.9999	0.9847	0.0043	64.19	0.0544	28.02	1/982	1/7748
SNV	Breast	MTOR_E2369Q_4	HLA-A30:01	MTRQKFPEK	0.9988	0.7498	0.0074	20.34	0.0122	26.08	1/982	1/7748
SNV	Breast	MTOR_E2369Q_1	HLA-B15:03	QKFPEKIPF	0.6653	0.8725	0.2173	3.08	0.0548	26.08	1/982	1/7748
SNV	Breast	MTOR_E2369Q_2	HLA-B15:03	RQKFPEKIPF	0.9703	0.7996	0.9346	5.06	0.0997	26.08	1/982	1/7748
SNV	Breast	ORC2_G470R_2	HLA-B14:02	SRSLPLSSL	0.9984	0.8318	0.0259	94.45	0.0314	27.61	1/982	1/7748
SNV	Breast	POGZ_E614D_3	HLA-B14:02	IHDDTRHLL	0.9897	0.5695	0.0818	396.26	0.0767	39.73	1/982	1/7748
SNV	Breast	POGZ_E614D_4	HLA-C02:10	MIHDDTRHL	0.5905	0.9763	0.0511	114.83	0.1767	39.73	1/982	1/7748
SNV	Breast	RALY_R69W_5	HLA-B14:02	ERHAWAAVL	0.9984	0.9584	0.0131	31.28	0.0136	87.81	1/982	1/7748
SNV	Breast	RALY_R69W_10	HLA-B15:03	VQYSNERHAW	0.9269	0.5135	0.6673	142.9	0.632	87.81	1/982	1/7748
SNV	Breast	RFC1_R824Q_2	HLA-B15:03	AQSKALTY	0.8565	0.7724	0.6787	3.71	0.0664	38.32	1/982	2/7748
SNV	Breast	SEC16A_P1703Q_3	HLA-B14:02	WRQHLAMVL	0.9958	0.8577	0.037	313.75	0.0686	45.38	1/982	1/7748
SNV	Breast	TTC13_D238Y_8	HLA-A30:01	RINEAVNYL	0.9732	0.8407	0.1655	455.89	0.1658	24.86	1/982	1/7748
SNV	Breast	TTC13_D238Y_8	HLA-C02:10	RINEAVNYL	0.8623	0.982	0.3479	5.73	0.0087	24.86	1/982	1/7748
SNV	Breast	TTC13_D238Y_8	HLA-C08:02	RINEAVNYL	0.9906	0.9785	0.5291	200.06	0.0982	24.86	1/982	1/7748
SNV	Breast	U2SURP_D555H_2	HLA-B14:02	NHIGDAMVF	0.9448	0.6184	0.2888	173.7	0.0503	45.53	1/982	1/7748
SNV	Breast	U2SURP_D555H_2	HLA-B15:03	NHIGDAMVF	0.7564	0.5464	1.0501	128.36	0.6035	45.53	1/982	1/7748
SNV	Breast	ZNF251_L192V_9	HLA-C02:10	SAFDRNLNV	0.9794	0.9652	0.0736	45.9	0.0982	48.05	1/982	1/7748
SNV	Breast	ZNF251_L192V_2	HLA-C08:02	NVDQNVVRL	0.9999	0.969	0.0259	42.73	0.0454	48.05	1/982	1/7748
SNV	Breast	B3GALNT2_A60V_3	HLA-B15:16	LSVRNNHEL	0.9541	0.7237	0.2473	213.73	0.7182	2.24	1/982	1/7748
SNV	Breast	CASZ1_N343K_1	HLA-A30:01	KVKYLHLFK	0.9991	0.7722	0.0067	18.52	0.0114	6.95	1/982	1/7748
SNV	Breast	CASZ1_N343K_7	HLA-B15:03	SKYDLEKVKY	0.9639	0.6134	1.2366	9.14	0.1566	6.95	1/982	1/7748
SNV	Breast	CDH1_D254Y_1	HLA-B15:03	YQNDNKPEF	0.9639	0.8866	0.0215	1.29	0.0082	139.37	1/982	1/7748
SNV	Breast	CDH1_D254Y_3	HLA-B15:16	VTYQNDNKPEF	0.9998	0.919	0.7392	68.78	0.4017	139.37	1/982	1/7748
SNV	Breast	CDH1_D254Y_1	HLA-C02:10	YQNDNKPEF	0.7905	0.9886	0.7873	30.85	0.0693	139.37	1/982	1/7748
SNV	Breast	CDH1_D254Y_1	HLA-C14:02	YQNDNKPEF	0.8963	0.9681	0.2343	10.29	0.1477	139.37	1/982	1/7748
SNV	Breast	CDH1_D254Y_2	HLA-C14:02	TYQNDNKPEF	0.9642	0.9722	0.4622	226.24	0.7389	139.37	1/982	1/7748
SNV	Breast	EGF_A45T_7	HLA-B15:16	STCVGPTPF	0.9505	0.6012	0.0954	369.07	0.9171	3.12	1/982	1/7748
SNV	Breast	EIF2AK3_A304S_1	HLA-C02:10	SIMDIVIKV	0.5973	0.9223	0.3176	34.07	0.0762	11.35	1/982	1/7748
SNV	Breast	FAR1_L196F_9	HLA-B15:03	LVNDITPKF	0.9701	0.8229	0.1358	36.98	0.366	19.12	1/982	1/7748
SNV	Breast	FAR1_L196F_1	HLA-B15:03	FIGDRPNTY	0.6354	0.6454	0.4527	90.55	0.5292	19.12	1/982	1/7748
SNV	Breast	FAR1_L196F_9	HLA-B15:16	LVNDITPKF	0.9944	0.6043	0.1164	5.29	0.0391	19.12	1/982	1/7748
SNV	Breast	FAR1_L196F_9	HLA-C02:10	LVNDITPKF	0.7587	0.971	0.034	5.33	0.0084	19.12	1/982	1/7748
SNV	Breast	FAR1_L196F_9	HLA-C14:02	LVNDITPKF	0.9871	0.9444	0.7554	43.73	0.3307	19.12	1/982	1/7748
SNV	Breast	FAR1_L196F_2	HLA-C14:02	KFIGDRPNTY	0.932	0.8636	0.2429	45	0.3355	19.12	1/982	1/7748
SNV	Breast	HOMEZ_S373T_2	HLA-B15:16	KTFFLQCQW	0.9909	0.9312	0.0043	42.67	0.299	10.72	1/982	1/7748
SNV	Breast	INO80_Y96F_9	HLA-B15:03	GSSGMLNTF	0.9368	0.573	0.1873	468.53	0.9305	15.9	1/982	1/7748
SNV	Breast	INO80_Y96F_9	HLA-B15:16	GSSGMLNTF	0.9916	0.6372	0.0727	11.99	0.1138	15.9	1/982	1/7748
SNV	Breast	INO80_Y96F_10	HLA-B15:16	AGSSGMLNTF	0.9724	0.6948	1.0381	324.91	0.8647	15.9	1/982	1/7748
SNV	Breast	INO80_Y96F_7	HLA-C14:02	SGMLNTFSL	0.6061	0.9531	1.9221	128.58	0.5668	15.9	1/982	1/7748
SNV	Breast	KIF22_E646D_7	HLA-B15:16	ITGKQMDSF	0.9549	0.5915	0.3008	36.21	0.2701	52.17	1/982	1/7748
SNV	Breast	PCDHB7_A717V_4	HLA-A30:01	RSRVAPVGR	0.9959	0.9027	0.0668	187.02	0.0849	1.55	1/982	1/7748
SNV	Breast	TTC21A_M682I_5	HLA-B15:16	VALNILRNI	0.9925	0.6845	0.6304	105	0.5147	2.29	1/982	1/7748
SNV	Breast	ZNF274_R218Q_7	HLA-A23:01	ALPVKLQTW	0.971	0.7935	0.7086	218.84	0.56	7.24	1/982	1/7748
SNV	Breast	ZNF274_R218Q_8	HLA-B15:16	GALPVKLQTW	0.9848	0.9711	0.3916	175.8	0.6504	7.24	1/982	1/7748
SNV	Breast	ZNF334_F168L_9	HLA-C14:02	KIPDGYSGL	0.8948	0.9438	1.2839	170.51	0.6439	2.72	1/982	1/7748
SNV	Breast	ITGA3_D441Y_6	HLA-A32:01	GQMDVYENF	0.9618	0.9322	0.9201	231.62	0.2129	38.07	1/982	1/7748
SNV	Breast	ITGA3_D441Y_1	HLA-B44:03	YENFYPDLL	0.826	0.9291	0.4955	391.43	0.3897	38.07	1/982	1/7748
SNV	Breast	ITGA3_D441Y_2	HLA-C04:01	VYENFYPDL	0.8539	0.6788	0.2701	420.04	0.1419	38.07	1/982	1/7748
SNV	Breast	NOP56_R154C_5	HLA-B58:01	HSYSCAKVKF	0.997	0.6017	1.2166	291.27	0.5547	55.36	1/982	1/7748
SNV	Breast	YTHDF3_P55S_4	HLA-B58:01	MSDSYMPSY	0.5669	0.8374	0.5526	53.58	0.3108	62.09	1/982	1/7748
SNV	Breast	ZNF500_T85S_2	HLA-B58:01	RSKEQILEL	0.9959	0.9252	0.4228	153.6	0.4536	6.42	1/982	1/7748
SNV	Breast	AFF3_D394V_9	HLA-A30:01	RTALRALSV	0.9978	0.884	0.1209	252.25	0.1065	5.47	1/982	1/7748
SNV	Breast	AFF3_D394V_5	HLA-C03:04	RALSVSAVV	0.9487	0.987	0.6211	100.91	0.2754	5.47	1/982	1/7748
SNV	Breast	AKNA_P1322S_5	HLA-B42:01	SPRPSPGLWYL	0.9662	0.6425	0.2086	53.14	0.2613	10.26	1/982	1/7748
SNV	Breast	AKNA_P1322S_3	HLA-C03:04	RPSPGLWYL	0.7828	0.9861	1.7037	229.12	0.38	10.26	1/982	1/7748
SNV	Breast	BCORL1_G1078V_2	HLA-A30:01	RVQAEVRAK	0.9968	0.8816	0.1021	51.28	0.0254	1.87	1/982	1/7748
SNV	Breast	BCORL1_G1078V_5	HLA-B42:01	APQRVQAEV	0.9729	0.5079	0.1078	9.57	0.1209	1.87	1/982	1/7748
SNV	Breast	ESRP1_C551R_3	HLA-B42:01	LPRLSPPSYTF	0.9864	0.5397	0.3992	30.71	0.2168	126.46	1/982	1/7748
SNV	Breast	ESRP1_C551R_1	HLA-C03:04	RLSPPSYTF	0.7728	0.9896	1.082	71.55	0.2395	126.46	1/982	1/7748
SNV	Breast	MAN2B2_L162R_6	HLA-C17:01	ATTPTRFAL	0.5912	0.8957	0.3229	245.33	0.3387	8.77	1/982	1/7748
SNV	Breast	MAN2B2_L162R_6	HLA-C03:04	ATTPTRFAL	0.9987	0.976	0.547	81.92	0.2538	8.77	1/982	1/7748
SNV	Breast	MAP3K10_D897G_7	HLA-A30:01	ASRPRLGPWK	0.9973	0.827	0.8136	327.49	0.1241	11.89	1/982	1/7748
SNV	Breast	MAP3K10_D897G_1	HLA-B42:01	GPWKLVSF	0.9507	0.7094	1.3039	359.6	0.4892	11.89	1/982	1/7748
SNV	Breast	MAP3K10_D897G_5	HLA-B42:01	RPRLGPWKL	0.5373	0.6615	0.0216	1.56	0.0219	11.89	1/982	1/7748
SNV	Breast	MAP3K10_D897G_5	HLA-B42:01	RPRLGPWKLV	0.5627	0.599	0.478	374.75	0.4956	11.89	1/982	1/7748
SNV	Breast	MECP2_R309W_9	HLA-B42:01	LPIKKRKTW	0.797	0.6765	0.8558	468.94	0.5328	5.11	1/982	1/7748
SNV	Breast	MROH8_D562N_8	HLA-A30:01	ISRPKYTNI	0.9139	0.724	0.5395	444.67	0.1631	1.17	1/982	1/7748
SNV	Breast	MROH8_D562N_3	HLA-C17:01	YTNIVLSFL	0.664	0.9073	0.2281	58.88	0.1522	1.17	1/982	1/7748
SNV	Breast	PAFAH1B2_L62R_2	HLA-B15:10	ERFSPLHAL	0.983	0.6104	0.0118	27	0.0073	14.31	1/982	1/7748
SNV	Breast	SLC25A1_A232T_6	HLA-C17:01	GAIAGTASV	0.8437	0.9903	0.3994	286.58	0.3651	200.78	1/982	1/7748
SNV	Breast	SLC25A1_A232T_6	HLA-C03:04	GAIAGTASV	0.9965	0.99	0.1971	14.64	0.1097	200.78	1/982	1/7748
SNV	Breast	SPIN3_N79I_9	HLA-C17:01	TVLDQVPVI	0.5423	0.959	0.494	153.96	0.265	1.35	1/982	1/7748
SNV	Breast	SPIN3_N79I_9	HLA-C03:04	TVLDQVPVI	0.9755	0.9885	0.7013	134.18	0.3066	1.35	1/982	1/7748
SNV	Breast	THBS1_T302I_3	HLA-C17:01	KVIEENKEL	0.5332	0.9354	0.2218	462.81	0.4623	42.05	1/982	1/7748
SNV	Breast	THBS1_T302I_3	HLA-C03:04	KVIEENKEL	0.9987	0.9943	0.1144	70.31	0.2377	42.05	1/982	1/7748
SNV	Breast	ABCG5_V476I_5	HLA-C03:04	LPFSIVATM	0.9918	0.9962	0.7094	142.2	0.3146	1.37	1/982	1/7748
SNV	Breast	ABCG5_V476I_3	HLA-C03:04	FSIVATMIF	0.9918	0.9846	0.276	419.13	0.4741	1.37	1/982	1/7748
SNV	Breast	HERC6_R441K_3	HLA-C03:04	MAKDTFKKL	0.9981	0.9902	0.0253	151.18	0.323	22.65	1/982	1/7748
SNV	Breast	RRH_S321R_7	HLA-C03:04	QTMPVTRIL	0.9987	0.9924	0.3901	28.2	0.1621	1.9	1/982	1/7748
SNV	Breast	WDFY3_I480V_2	HLA-C03:04	SVIAMKTLL	0.9977	0.9929	0.8003	389.54	0.4622	15.45	1/982	1/7748
SNV	Breast	DOPEY2_P135Q_8	HLA-C04:01	LYEKYFLQL	0.9907	0.8416	0.1103	175.03	0.0922	3.95	1/982	1/7748
SNV	Breast	MGAT4A_S441I_10	HLA-C04:01	KFDKPVNVEI	0.9987	0.6214	0.0408	136.05	0.082	4.25	1/982	1/7748
SNV	Breast	SIGLEC10_Q258R_10	HLA-A68:01	NTPALEPQPR	0.9883	0.5464	0.4089	484.22	0.6747	3.1	1/982	1/7748
SNV	Breast	SYPL1_T77A_2	HLA-C06:02	AAFGYPFRL	0.9844	0.9956	0.1535	317.97	0.1634	145.04	1/982	1/7748
SNV	Breast	CHM_M296I_5	HLA-B27:05	KRMLIKFLT	0.9989	0.8099	0.7171	200.67	0.4849	2.39	1/982	1/7748
SNV	Breast	CHM_M296I_5	HLA-B27:05	KRMLIKFLTF	1	0.8559	0.0641	3.9	0.1227	2.39	1/982	1/7748
SNV	Breast	KMT2A_I1401F_9	HLA-B35:03	IPADGVHRF	0.9727	0.7061	0.0215	3.76	0.0198	2.47	1/982	1/7748
SNV	Breast	MSN_R100H_8	HLA-A02:05	LIQDITQHL	0.9937	0.6652	0.0446	16.77	0.1065	54.23	1/982	1/7748
SNV	Breast	MSN_R100H_7	HLA-C04:01	IQDITQHLF	0.9998	0.8656	0.1155	74.27	0.0659	54.23	1/982	1/7748
SNV	Breast	SEMA6C_A77S_8	HLA-B27:05	NRTLLVASR	0.9991	0.5752	0.6148	366.86	0.5609	3.76	1/982	1/7748
SNV	Breast	C17orf96_L369V_7	HLA-B44:03	VPEPPGVKFW	0.9091	0.9458	1.6021	71.65	0.2587	5.99	1/982	1/7748
SNV	Breast	FAT1_A2088V_5	HLA-B42:01	LPYYVVVKV	0.8103	0.6737	0.3939	104.28	0.3301	19.29	1/982	1/7748
SNV	Breast	FAT1_A2088V_8	HLA-C17:01	FVNLPYYVV	0.6364	0.9058	1.4324	262.91	0.3505	19.29	1/982	1/7748
SNV	Breast	FOXA1_I176M_4	HLA-C17:01	YSYMSLITM	0.6108	0.8367	0.2739	118.3	0.2316	363.94	1/982	1/7748
SNV	Breast	FOXA1_I176M_2	HLA-C17:01	YMSLITMAI	0.6182	0.8516	0.2657	83.08	0.1887	363.94	1/982	1/7748
SNV	Breast	FOXA1_I176M_9	HLA-C16:01	HAKPPYSYM	0.8376	0.9684	0.0149	6.38	0.0638	363.94	1/982	1/7748
SNV	Breast	FOXA1_I176M_4	HLA-C16:01	YSYMSLITM	0.9538	0.983	0.0503	2.67	0.0185	363.94	1/982	1/7748
SNV	Breast	FOXA1_I176M_2	HLA-C16:01	YMSLITMAI	0.8101	0.9583	1.0139	463.56	0.8194	363.94	1/982	1/7748
SNV	Breast	LATS1_R1125C_6	HLA-B44:03	SEIKNCDLVY	0.9991	0.8145	0.0275	13.49	0.1385	16.68	1/982	1/7748
SNV	Breast	PTCD2_L339P_7	HLA-B44:03	DEIYGTPHI	0.9604	0.9149	0.502	277.57	0.3627	4	1/982	1/7748
SNV	Breast	ERBB2_V777L_1	HLA-C12:03	LGSPYVSRL	0.9891	0.9831	0.6956	172.59	0.6807	218.22	2/982	2/7748
SNV	Breast	KDM4A_K1012R_1	HLA-C07:02	RRVKSRLSV	0.9081	0.8571	0.2575	461.93	0.3857	43.54	1/982	1/7748
SNV	Breast	MAN2A2_S1047L_8	HLA-C07:02	SFHPLASLL	0.5108	0.9744	0.0756	23.72	0.085	16.3	1/982	1/7748
SNV	Breast	MAN2A2_S1047L_9	HLA-C12:03	RSFHPLASL	0.9951	0.9918	0.0075	4.31	0.0477	16.3	1/982	1/7748
SNV	Breast	MAN2A2_S1047L_8	HLA-C12:03	SFHPLASLL	0.5039	0.9894	1.1985	434.5	1.0172	16.3	1/982	1/7748
SNV	Breast	MMP15_N272K_1	HLA-B39:10	KPNAIMAPF	0.5331	0.8928	0.4394	67.45	0.2391	33.15	1/982	1/7748
SNV	Breast	MMP15_N272K_4	HLA-C12:03	HSSKPNAIM	0.8766	0.9806	0.1394	303.39	0.8821	33.15	1/982	1/7748
SNV	Breast	SKI_E215V_3	HLA-C12:03	LSVRSVRVY	0.5666	0.9774	0.4515	379.65	0.9648	73.94	1/982	1/7748
SNV	Breast	MRPL3_K103M_9	HLA-C07:01	FRVGLIALM	0.9991	0.6753	0.0177	20.35	0.0383	149.93	1/982	1/7748
SNV	Breast	ZNF500_P115L_9	HLA-B08:01	QARVREQQL	0.9981	0.5634	0.0338	7.45	0.0317	11.39	1/982	1/7748
SNV	Breast	MTHFSD_V77M_1	HLA-B08:01	MLQSKKTL	0.9985	0.9067	0.1455	3.82	0.0163	8.59	1/982	1/7748
SNV	Breast	MTHFSD_V77M_1	HLA-B08:01	MLQSKKTLL	0.9964	0.8739	0.0013	5.18	0.0219	8.59	1/982	1/7748
SNV	Breast	NCOA1_Q882H_1	HLA-B53:01	HPGTGDQIPW	0.92	0.6813	0.1273	34.42	0.1048	13.44	1/982	1/7748
SNV	Breast	AKAP13_Q2642H_5	HLA-B44:03	EELQHKKGTY	0.9993	0.8294	0.062	4.97	0.0874	18.72	1/982	1/7748
SNV	Breast	CHERP_E31Q_8	HLA-B27:05	ARNGPEFQK	0.9985	0.7289	0.1732	4.89	0.1403	40.55	1/982	1/7748
SNV	Breast	CHERP_E31Q_8	HLA-B27:05	ARNGPEFQKM	0.9999	0.6721	0.0421	4.97	0.1414	40.55	1/982	1/7748
SNV	Breast	IGFBP5_E130K_6	HLA-B44:03	SEMAEKTY	0.9998	0.9359	0.2938	7.97	0.1108	105.85	1/982	1/7748
SNV	Breast	IGFBP5_E130K_3	HLA-B44:03	AEKTYSPKI	0.9762	0.9674	0.3942	88.38	0.2743	105.85	1/982	1/7748
SNV	Breast	IGFBP5_E130K_3	HLA-B44:03	AEKTYSPKIF	0.9901	0.955	0.2355	24.66	0.1689	105.85	1/982	1/7748
SNV	Breast	INO80B_E173K_1	HLA-B27:05	KRLLTARQR	0.9993	0.7441	0.2616	158.1	0.4584	12.17	1/982	1/7748
SNV	Breast	ISLR_M129I_2	HLA-C04:01	KIDSNELTF	0.9998	0.8119	0.0848	433.86	0.1443	220.25	1/982	1/7748
SNV	Breast	NBPF3_Q626H_8	HLA-B27:05	IRHHLAFHM	0.9995	0.7299	0.0246	18.87	0.2434	7.78	1/982	1/7748
SNV	Breast	PIK3CA_E453K_3	HLA-A02:01	GLKDLLNPI	0.9672	0.5423	0.5138	157.89	0.4669	9.74	5/982	6/7748
SNV	Breast	TRIO_G2885E_4	HLA-B27:05	VRWESLTEGK	0.9988	0.7624	0.3341	66.74	0.3641	12.29	1/982	1/7748
SNV	Breast	UBXN7_R215T_5	HLA-B44:03	EEGQTYIQF	0.9987	0.7661	0.0391	2.79	0.0559	19.47	1/982	1/7748
SNV	Breast	UBXN7_R215T_6	HLA-B44:03	SEEGQTYIQF	0.9993	0.7433	0.058	19.44	0.1568	19.47	1/982	1/7748
SNV	Breast	UBXN7_R215T_5	HLA-B44:03	EEGQTYIQFY	0.9977	0.8091	0.0915	6.79	0.1018	19.47	1/982	1/7748
SNV	Breast	UBXN7_R215T_6	HLA-B44:03	SEEGQTYIQFY	0.9987	0.7983	0.1675	293.36	0.3671	19.47	1/982	1/7748
SNV	Breast	VSIG10L_R731W_7	HLA-A02:01	ILGPQEWSA	0.9732	0.6937	0.4654	40.74	0.2818	1.2	1/982	1/7748
SNV	Breast	VSIG10L_R731W_3	HLA-B44:03	QEWSAVVPL	0.9601	0.9845	0.1175	203.25	0.3382	1.2	1/982	1/7748
SNV	Breast	ZBTB10_C455Y_1	HLA-B27:05	YRNFIKDAL	0.9988	0.9298	0.199	3.68	0.1166	14.92	1/982	1/7748
SNV	Breast	ZBTB10_C455Y_7	HLA-B44:03	SEVVQTYRNF	0.999	0.9316	0.034	7.97	0.1108	14.92	1/982	1/7748
SNV	Breast	G3BP2_S39F_9	HLA-C07:02	HRFYGRNSF	0.8846	0.9423	0.0181	3.13	0.0096	72.5	1/982	1/7748
SNV	Breast	G3BP2_S39F_8	HLA-C07:02	RFYGRNSFY	0.7259	0.9465	0.8716	30.11	0.098	72.5	1/982	1/7748
SNV	Breast	GPRASP2_A422T_8	HLA-B35:01	EGAIGGSTY	0.8753	0.9182	0.3389	90.32	0.2973	12.49	1/982	1/7748
SNV	Breast	GRB10_P136A_7	HLA-C07:02	FRTSSLAAI	0.8351	0.9425	0.2865	240.08	0.2914	24.54	1/982	1/7748
SNV	Breast	MSH6_G443R_1	HLA-B35:01	RVSELGLVF	0.9187	0.8571	0.1966	258.84	0.406	18.12	1/982	1/7748
SNV	Breast	MSH6_G443R_8	HLA-C07:02	YHMDALIRV	0.5487	0.927	0.8405	128.11	0.2203	18.12	1/982	1/7748
SNV	Breast	C6orf141_D115N_8	HLA-B44:03	EEVAGAENL	0.9484	0.9393	0.218	14.9	0.1434	2.24	1/982	1/7748
SNV	Breast	CA11_G233D_5	HLA-B44:03	PESFDFITY	0.8289	0.9147	0.3802	197.39	0.3359	99.68	1/982	1/7748
SNV	Breast	COL3A1_S1274R_5	HLA-B44:03	PELKRGEYW	0.8567	0.9367	0.5556	53.49	0.2336	662.59	1/982	1/7748
SNV	Breast	DPP3_R703H_1	HLA-C04:01	HFPEDGPEL	0.8451	0.8939	0.0266	104.94	0.0752	77.03	1/982	1/7748
SNV	Breast	FAT2_S1047L_6	HLA-B44:03	QENSPLGTQV	0.7082	0.933	0.2355	427.26	0.3966	11.06	1/982	1/7748
SNV	Breast	GZMM_Y245D_6	HLA-B53:01	TAVAPDVSW	0.9871	0.5226	0.0182	3.25	0.0251	5.41	1/982	1/7748
SNV	Breast	KCND1_F231I_8	HLA-B44:03	GERFPQAIF	0.9775	0.9458	0.2291	52.84	0.2325	1.66	1/982	1/7748
SNV	Breast	L1CAM_S442R_6	HLA-B53:01	MAVQGRTAY	0.9254	0.6996	0.0864	115.26	0.1793	12.12	1/982	1/7748
SNV	Breast	PON1_H243Y_6	HLA-B44:03	AELLAYKIHVY	0.9997	0.9053	0.4436	42.67	0.2126	1.08	1/982	1/7748
SNV	Breast	RAF1_R354W_8	HLA-B44:03	SEVMLSTW	0.9998	0.9802	0.1331	18.58	0.1545	24.05	1/982	1/7748
SNV	Breast	RAF1_R354W_11	HLA-B44:03	IEASEVMLSTW	0.9997	0.9762	0.1515	115.43	0.2941	24.05	1/982	1/7748
SNV	Breast	RAF1_R354W_10	HLA-B53:01	EASEVMLSTW	0.9909	0.6645	0.2064	34.58	0.1051	24.05	1/982	1/7748
SNV	Breast	SLC9A2_F162L_1	HLA-C04:01	LFENIGTIF	0.7629	0.5931	0.0968	14.62	0.0311	1.79	1/982	1/7748
SNV	Breast	VILL_V265F_9	HLA-B44:03	YEKGKDLVF	0.9661	0.8242	0.1475	150.53	0.3147	2.69	1/982	1/7748
SNV	Breast	ZC3H15_D142H_6	HLA-C04:01	YIDARHEEL	1	0.7666	0.0163	40.34	0.0516	80.24	1/982	1/7748
SNV	Breast	ZNF335_E329K_4	HLA-B44:03	AEDKPRGRQL	0.9773	0.6052	0.3351	127.42	0.3016	17.51	1/982	1/7748
SNV	Breast	ZNF547_E14Q_3	HLA-C04:01	VFQDVAIYF	0.7523	0.9079	0.1424	15.51	0.032	1.54	1/982	1/7748
SNV	Breast	BOD1L1_D140Y_3	HLA-B57:03	VVYPKINHTF	0.9998	0.8128	0.1854	15.57	0.1311	16.89	1/982	1/7748
SNV	Breast	CSMD1_G2010S_2	HLA-B57:03	ISYGAHIQF	0.9987	0.8807	0.0054	1.55	0.0075	2.9	1/982	1/7748
SNV	Breast	NRXN2_A814T_5	HLA-A68:02	ETLFTGHKL	0.9919	0.5268	0.1901	49.03	0.1499	3.27	1/982	1/7748
SNV	Breast	UTRN_I1851M_5	HLA-B57:03	KAIPMQQRKM	0.9842	0.9756	0.996	233.85	0.4537	18.75	1/982	1/7748
SNV	Breast	WDFY4_A1959V_7	HLA-A68:02	AAAPSLVNI	0.8991	0.515	0.9685	184.76	0.3034	4.53	1/982	1/7748
SNV	Breast	WDFY4_A1959V_10	HLA-B45:01	AEAAAAPSLV	0.997	0.9552	0.1233	38.04	0.1292	4.53	1/982	1/7748
SNV	Breast	WDFY4_A1959V_7	HLA-B57:03	AAAPSLVNI	0.9886	0.9822	0.6038	45.63	0.2168	4.53	1/982	1/7748
SNV	Breast	DSEL_R306C_7	HLA-C12:03	YVFLAQCHF	0.6365	0.9946	0.3784	244.97	0.809	2.98	1/982	1/7748
SNV	Breast	MB21D2_S197L_10	HLA-C14:02	FYDSISIVLL	0.9921	0.9104	0.342	262.35	0.8037	8.03	1/982	1/7748
SNV	Breast	RAB9B_V28I_1	HLA-B15:16	ITNKFDSQAF	0.9958	0.5435	0.5339	58.64	0.3671	2.32	1/982	1/7748
SNV	Breast	ATP5C1_L273V_7	HLA-B35:01	MIDKLTVTF	0.9772	0.9624	0.1866	10.78	0.1346	327.48	1/982	1/7748
SNV	Breast	ATP5C1_L273V_7	HLA-C04:01	MIDKLTVTF	0.9998	0.7242	0.0297	67.28	0.0628	327.48	1/982	1/7748
SNV	Breast	ATP5C1_L273V_7	HLA-C17:01	MIDKLTVTF	0.6809	0.6851	0.0259	26.99	0.0815	327.48	1/982	1/7748
SNV	Breast	C2orf69_P373T_3	HLA-B35:01	EATSIENHF	0.9686	0.8103	0.2319	23.75	0.1875	12.41	1/982	1/7748
SNV	Breast	C2orf69_P373T_1	HLA-C17:01	TSIENHFRV	0.7028	0.9155	1.1452	358.57	0.4042	12.41	1/982	1/7748
SNV	Breast	CABYR_E349D_3	HLA-C17:01	VVDKTTSGM	0.5009	0.9548	0.2281	69.71	0.1674	1.39	1/982	1/7748
SNV	Breast	COL12A1_G934S_8	HLA-B35:01	SAPGMVRSY	0.98	0.8539	0.2211	24.49	0.1895	15.89	1/982	1/7748
SNV	Breast	CXADR_G245E_9	HLA-A02:02	GLIAGAIIET	0.9941	0.5563	1.0388	227.45	0.9008	3.03	1/982	1/7748
SNV	Breast	CXADR_G245E_8	HLA-A02:02	LIAGAIIETL	0.9935	0.5019	0.4705	279.83	0.9649	3.03	1/982	1/7748
SNV	Breast	CXADR_G245E_4	HLA-C17:01	AIIETLLAL	0.6336	0.9533	0.0259	68.79	0.1662	3.03	1/982	1/7748
SNV	Breast	ECEL1_W563L_2	HLA-A02:02	TLLLPPQAL	0.9039	0.7022	1.4121	74.44	0.6208	1.35	1/982	1/7748
SNV	Breast	ECEL1_W563L_7	HLA-C17:01	EVDKSTLLL	0.6593	0.7977	0.4487	101.72	0.2145	1.35	1/982	1/7748
SNV	Breast	IGF2R_A281V_3	HLA-B35:01	SPVVTITF	0.9753	0.6777	0.4208	96.85	0.3041	29.96	1/982	1/7748
SNV	Breast	ILVBL_L464V_7	HLA-B35:01	LPDNSIVVV	0.9565	0.8991	0.3912	36.79	0.22	37.47	1/982	1/7748
SNV	Breast	ILVBL_L464V_8	HLA-C17:01	TLPDNSIVV	0.5027	0.7726	0.8304	156.08	0.267	37.47	1/982	1/7748
SNV	Breast	LIN37_E187D_8	HLA-B35:01	IPSPLQPDM	0.9883	0.6822	0.0915	5.34	0.0933	7.09	1/982	1/7748
SNV	Breast	MYOM1_P1245A_5	HLA-B42:01	FPTVAVKSEL	0.9722	0.8387	0.1391	47.79	0.2507	2.04	1/982	1/7748
SNV	Breast	NCKAP5_K1155M_4	HLA-C17:01	VLMMSPQLL	0.6014	0.8964	0.5773	139.7	0.2507	1.04	1/982	1/7748
SNV	Breast	NFASC_S755L_7	HLA-B42:01	TPMNATLAF	0.7771	0.7759	0.02	1.67	0.0302	1.17	1/982	1/7748
SNV	Breast	NFASC_S755L_7	HLA-B35:01	TPMNATLAF	0.9989	0.7281	0.0039	1.09	0.0059	1.17	1/982	1/7748
SNV	Breast	NFASC_S755L_1	HLA-B35:01	LAFGPNLRY	0.9984	0.8921	0.0578	1.85	0.0335	1.17	1/982	1/7748
SNV	Breast	NFASC_S755L_8	HLA-B35:01	WTPMNATLAF	0.9776	0.7118	1.6584	25.7	0.1927	1.17	1/982	1/7748
SNV	Breast	OPRL1_T109M_6	HLA-B42:01	LPFQGMDIL	0.6073	0.8079	0.1549	6.61	0.1023	1.11	1/982	1/7748
SNV	Breast	OPRL1_T109M_6	HLA-B42:01	LPFQGMDILL	0.7842	0.8366	0.377	297.99	0.4602	1.11	1/982	1/7748
SNV	Breast	OPRL1_T109M_6	HLA-B35:01	LPFQGMDIL	0.9863	0.9329	0.1339	3.62	0.071	1.11	1/982	1/7748
SNV	Breast	RASGRP2_R455H_4	HLA-B35:01	QIIHGNFPY	0.975	0.9267	0.108	167.64	0.3604	1.45	1/982	1/7748
SNV	Breast	STAG1_V234L_9	HLA-A02:02	AMKLMTALL	0.9624	0.534	1.0651	477.79	1.1465	9.83	1/982	1/7748
SNV	Breast	STAG1_V234L_7	HLA-A02:02	KLMTALLNV	0.998	0.5596	0.0772	2.58	0.0834	9.83	1/982	1/7748
SNV	Breast	STAG1_V234L_3	HLA-A02:02	ALLNVALNL	0.9867	0.5108	0.7525	6.47	0.1896	9.83	1/982	1/7748
SNV	Breast	STAG1_V234L_5	HLA-C17:01	MTALLNVAL	0.8356	0.8835	0.2739	387.31	0.4217	9.83	1/982	1/7748
SNV	Breast	UBR5_R23G_7	HLA-A02:02	QLNDRLGEV	0.9967	0.5403	0.3436	15.81	0.3355	55.14	1/982	1/7748
SNV	Breast	UBR5_R23G_3	HLA-C17:01	RLGEVSEKL	0.5522	0.9802	0.4606	323.13	0.3854	55.14	1/982	1/7748
SNV	Breast	CCDC157_V272M_6	HLA-B35:01	LPAATMGRW	0.9849	0.9349	0.5769	243.85	0.3988	5.36	1/982	1/7748
SNV	Breast	CCDC157_V272M_9	HLA-C07:02	LRPLPAATM	0.9477	0.9862	0.0638	46.48	0.1262	5.36	1/982	1/7748
SNV	Breast	FSD1_E355A_7	HLA-B35:01	TLIDGGAHY	0.9443	0.8472	0.2421	13.35	0.1517	6.78	1/982	1/7748
SNV	Breast	IARS2_R817H_3	HLA-C07:02	KRHSCQTAL	0.7957	0.8871	0.024	369.45	0.3528	110.12	1/982	1/7748
SNV	Breast	PLK2_L208V_6	HLA-C07:02	HRDLKVGNF	0.8206	0.9226	0.1631	46.96	0.1271	19.83	1/982	1/7748
SNV	Breast	PPARG_L242V_4	HLA-B27:05	LRAVAKHLY	0.9985	0.956	0.252	172.28	0.468	3.72	1/982	1/7748
SNV	Breast	TMEM26_V271L_1	HLA-B27:05	LRLILMTYF	0.9995	0.8634	0.4199	15	0.2262	1.11	1/982	1/7748
SNV	Breast	TMEM26_V271L_9	HLA-C03:04	IQDGPFLVL	0.9911	0.9919	0.1971	129.82	0.3021	1.11	1/982	1/7748
SNV	Breast	SEMA6A_L818M_9	HLA-B15:03	SHIPSVVVM	0.8086	0.8681	0.9019	13.66	0.2013	3	1/982	1/7748
SNV	Breast	STAR_V28M_2	HLA-B15:03	AMMAISQEL	0.8584	0.9197	0.1843	124.27	0.596	9.65	1/982	1/7748
SNV	Breast	STAR_V28M_2	HLA-C02:10	AMMAISQEL	0.79	0.9603	0.559	209.11	0.2733	9.65	1/982	1/7748
SNV	Breast	ZNF112_K750I_6	HLA-C02:10	RVKPYICEM	0.9155	0.9825	0.1755	180.87	0.2497	5.58	1/982	1/7748
SNV	Breast	NFATC1_T154M_6	HLA-C07:01	KRSPSMATL	0.9991	0.6752	0.0057	51.52	0.0664	12.39	1/982	2/7748
SNV	Breast	SEC22C_P150T_7	HLA-B08:01	ELKLQPTAV	0.9948	0.7859	0.0563	23.41	0.07	22.13	1/982	1/7748
SNV	Breast	CYP4X1_S117T_6	HLA-A02:01	YLQKFTPPL	0.996	0.6763	0.007	3.08	0.0678	325.86	1/982	1/7748
SNV	Breast	CYP4X1_S117T_6	HLA-A02:01	YLQKFTPPLL	0.9837	0.6553	0.519	214.45	0.5182	325.86	1/982	1/7748
SNV	Breast	CYP4X1_S117T_6	HLA-C16:01	YLQKFTPPL	0.8892	0.9862	0.5473	289.67	0.6832	325.86	1/982	1/7748
SNV	Breast	EEF1A1_V12I_8	HLA-C16:01	KTHINIVII	0.8896	0.9266	0.678	263.53	0.6556	3400.08	1/982	1/7748
SNV	Breast	GFM1_A134V_8	HLA-C16:01	FTIEVERVL	0.9605	0.9739	0.1394	23.07	0.1836	42.86	1/982	1/7748
SNV	Breast	GFM1_A134V_8	HLA-C03:03	FTIEVERVL	0.9996	0.9893	0.0372	4.82	0.0481	42.86	1/982	1/7748
SNV	Breast	ROBO3_A413T_1	HLA-B15:01	TVQRGDAGYY	0.9969	0.7996	0.9734	35.51	0.1845	2.72	1/982	1/7748
SNV	Breast	SEC23IP_Q69E_4	HLA-A02:01	FLGETSIHT	0.9661	0.6047	0.2524	58.85	0.3233	37.2	1/982	1/7748
SNV	Breast	WDFY4_L711M_6	HLA-A02:01	GLFEKMAEDL	0.9517	0.6413	1.1885	34.87	0.2667	1.36	1/982	1/7748
SNV	Breast	FAM96A_S22F_3	HLA-A74:01	GLFEPGAAR	0.9728	0.9815	0.228	220.43	0.0339	49.36	1/982	1/7748
SNV	Breast	FCRLA_T89S_1	HLA-C04:01	SFSEPFHLI	0.8231	0.7183	0.1595	162.71	0.0885	2.4	1/982	1/7748
SNV	Breast	HUWE1_K3274N_8	HLA-B35:01	RPLDLLHNM	0.9901	0.8198	0.2489	7.94	0.1139	22.54	1/982	1/7748
SNV	Breast	LILRB2_H409Y_1	HLA-B35:01	YPSEPLEL	0.9812	0.9301	0.5059	202.81	0.3799	5.33	1/982	1/7748
SNV	Breast	LILRB2_H409Y_9	HLA-B35:01	NSDPYLLSY	0.8506	0.8337	0.3751	20.65	0.1782	5.33	1/982	1/7748
SNV	Breast	LILRB2_H409Y_1	HLA-B35:01	YPSEPLELV	0.9615	0.8552	0.1984	159.75	0.3554	5.33	1/982	1/7748
SNV	Breast	LILRB2_H409Y_2	HLA-C04:01	SYPSEPLEL	0.5149	0.7686	0.0395	195.15	0.0999	5.33	1/982	1/7748
SNV	Breast	NAT10_E506K_6	HLA-B35:01	LPEACKLYY	0.9965	0.7116	0.0578	35.09	0.2162	30.9	1/982	1/7748
SNV	Breast	PRDX2_D189Y_9	HLA-B35:01	DTIKPNVDY	0.9294	0.7507	0.451	175.95	0.3653	556.67	1/982	1/7748
SNV	Breast	PRDX2_D189Y_6	HLA-B35:01	KPNVDYSKEY	0.9607	0.74	0.6606	71.66	0.2764	556.67	1/982	1/7748
SNV	Breast	TBC1D25_G475D_4	HLA-B35:01	RPADGGGSTF	0.9587	0.6697	0.1268	20.22	0.1768	13.96	1/982	1/7748
SNV	Breast	TBXAS1_V193A_1	HLA-B53:01	AAFGTPVDSW	0.9838	0.8511	0.1336	144.86	0.199	9.15	1/982	1/7748
SNV	Breast	TEAD1_S202L_9	HLA-B35:01	EPASAPAPL	0.9667	0.7752	0.2529	122.74	0.3284	4.93	1/982	1/7748
SNV	Breast	TEAD1_S202L_5	HLA-B35:01	APAPLVPAW	0.9823	0.8279	0.1281	5.16	0.0919	4.93	1/982	1/7748
SNV	Breast	TEAD1_S202L_4	HLA-B53:01	PAPLVPAW	0.9813	0.855	1.3085	161.41	0.2085	4.93	1/982	1/7748
SNV	Breast	TEAD1_S202L_5	HLA-B53:01	APAPLVPAW	0.9836	0.9057	0.0032	1.72	0.0072	4.93	1/982	1/7748
SNV	Breast	TEAD1_S202L_6	HLA-B53:01	SAPAPLVPAW	0.9596	0.8109	0.1273	7.62	0.0487	4.93	1/982	1/7748
SNV	Breast	C11orf24_A242T_2	HLA-C12:03	TTASPVPPM	0.9567	0.9685	0.1451	90.47	0.496	51.02	1/982	1/7748
SNV	Breast	DRAP1_F80Y_7	HLA-B18:01	IELEQQYDF	0.9941	0.9411	0.0488	7.25	0.0491	192.2	1/982	1/7748
SNV	Breast	EHD4_I247F_3	HLA-C12:03	KVFNTPEVL	0.9656	0.9951	0.2183	6	0.0726	31.76	1/982	1/7748
SNV	Breast	ERBB2_V777L_5	HLA-A02:01	VMAGLGSPYV	0.9947	0.6909	0.2069	92.66	0.3817	173.04	2/982	2/7748
SNV	Breast	ERBB2_V777L_6	HLA-A25:01	YVMAGLGSPY	0.9771	0.9539	0.286	348.32	0.0592	173.04	1/982	2/7748
SNV	Breast	ERBB2_V777L_9	HLA-B18:01	DEAYVMAGL	0.9678	0.9339	0.2955	113.98	0.1627	173.04	1/982	1/7748
SNV	Breast	ERBB2_V777L_1	HLA-C12:03	LGSPYVSRL	0.9891	0.9831	0.6956	172.59	0.6807	173.04	2/982	2/7748
SNV	Breast	GRWD1_G330E_9	HLA-A02:01	FLLSGGDDEAL	0.9932	0.5711	0.6989	175.15	0.4846	29.89	1/982	1/7748
SNV	Breast	GRWD1_G330E_2	HLA-B18:01	DEALKIWDL	0.9489	0.8396	0.3157	263.37	0.2171	29.89	1/982	1/7748
SNV	Breast	PTPRG_M174I_3	HLA-B18:01	VEIQIFFY	0.9958	0.794	0.1172	31.63	0.1006	3.45	1/982	1/7748
SNV	Breast	PTPRG_M174I_7	HLA-C07:01	RRFPVEIQI	0.9988	0.7945	0.0245	20.25	0.0382	3.45	1/982	1/7748
SNV	Breast	PTPRG_M174I_7	HLA-C07:01	RRFPVEIQIF	0.9992	0.7173	0.0406	197.92	0.1155	3.45	1/982	1/7748
SNV	Breast	DIP2A_A1305D_3	HLA-B35:01	LPDRAVSTTF	0.9936	0.7902	0.2116	6.83	0.1051	5.51	1/982	1/7748
SNV	Breast	ZNF101_T33M_5	HLA-C07:01	YRDVMLETF	0.9986	0.6793	0.0211	94.61	0.0849	7.61	1/982	1/7748
SNV	Breast	ACTR6_R332Q_7	HLA-B35:01	FPGFRDQVY	0.9983	0.8648	0.0234	1.32	0.0179	17.12	1/982	1/7748
SNV	Breast	DST_G4229R_4	HLA-C04:01	YQDRLQAVF	0.9998	0.9088	0.1655	177.22	0.0931	2.12	1/982	1/7748
SNV	Breast	G6PD_E63A_3	HLA-B35:01	LPANTFIVGY	0.9972	0.5972	0.0867	11.08	0.1368	299.05	1/982	1/7748
SNV	Breast	HECTD4_T1783N_1	HLA-B35:01	NASEPDTTL	0.8361	0.9001	0.4169	125.94	0.331	2.42	1/982	1/7748
SNV	Breast	NUP133_I668R_10	HLA-A03:01	RLSDLVNTAR	0.9976	0.6425	0.2435	331.61	0.4368	8.35	1/982	1/7748
SNV	Breast	P3H1_Q339R_5	HLA-B35:01	EVMNRNLAY	0.9797	0.8566	0.1835	3.85	0.0748	17.09	1/982	1/7748
SNV	Breast	PUS7_T653A_3	HLA-B53:01	NQAQLNTTW	0.677	0.5065	0.3599	221.71	0.2363	3.03	1/982	1/7748
SNV	Breast	VPS33B_A9S_3	HLA-B35:01	SPELPDFSM	0.9909	0.9013	0.298	8.28	0.1164	9.4	1/982	1/7748
SNV	Breast	VPS33B_A9S_9	HLA-B35:01	FPHRPDSPEL	0.9905	0.7721	0.4305	70.2	0.2745	9.4	1/982	1/7748
SNV	Breast	BIRC6_T1115S_7	HLA-A02:01	VLNSNISNI	0.989	0.5142	0.6863	111.08	0.4067	18.44	1/982	1/7748
SNV	Breast	BIRC6_T1115S_2	HLA-C17:01	ISNIPQIQV	0.7282	0.8078	0.5308	462.08	0.462	18.44	1/982	1/7748
SNV	Breast	BIRC6_T1115S_2	HLA-C15:02	ISNIPQIQV	0.9996	0.8996	0.1304	9.12	0.0804	18.44	1/982	1/7748
SNV	Breast	DAPK1_A248T_2	HLA-C15:02	LTKDFIRRL	0.9825	0.8038	0.1737	126.59	0.436	41.78	1/982	1/7748
SNV	Breast	EMP1_T33M_2	HLA-A02:01	NMVDASVGL	0.9739	0.5128	0.2333	14.84	0.1918	409.32	1/982	1/7748
SNV	Breast	EMP1_T33M_2	HLA-C17:01	NMVDASVGL	0.5233	0.9626	0.4606	310.19	0.3785	409.32	1/982	1/7748
SNV	Breast	EMP1_T33M_4	HLA-C15:02	VSNMVDASV	0.9986	0.898	0.6613	217.45	0.5403	409.32	1/982	1/7748
SNV	Breast	NDUFC2_R77C_5	HLA-A02:01	YLVKCEDYL	0.9353	0.6579	0.0602	149.21	0.4572	44.76	1/982	1/7748
SNV	Breast	PTCH2_A389V_8	HLA-A02:01	TLDDILHV	0.9954	0.7499	0.8226	191.03	0.4995	5	1/982	2/7748
SNV	Breast	PTCH2_A389V_9	HLA-A02:01	TTLDDILHV	0.9842	0.7462	0.1676	58.32	0.3222	5	1/982	2/7748
SNV	Breast	PTCH2_A389V_8	HLA-A02:01	TLDDILHVF	0.9532	0.6583	0.6574	67.04	0.3401	5	1/982	2/7748
SNV	Breast	PTCH2_A389V_9	HLA-C17:01	TTLDDILHV	0.6478	0.877	0.3134	162.04	0.2726	5	1/982	1/7748
SNV	Breast	PTCH2_A389V_8	HLA-C17:01	TLDDILHVF	0.731	0.7683	0.013	8.8	0.0329	5	1/982	1/7748
SNV	Breast	PTCH2_A389V_9	HLA-C15:02	TTLDDILHV	0.9991	0.9396	0.0535	22.18	0.1568	5	1/982	1/7748
SNV	Breast	PTCH2_A389V_8	HLA-C15:02	TLDDILHVF	0.7365	0.8818	0.1646	73.05	0.3369	5	1/982	1/7748
SNV	Breast	TP53_V157D_4	HLA-C15:02	GTRDRAMAI	0.9789	0.7466	0.924	63.63	0.3117	255.18	1/982	1/7748
SNV	Breast	ATP2B1_E605Q_7	HLA-C12:03	FSKGASQII	0.9867	0.9402	0.2148	131.73	0.5958	19.89	1/982	1/7748
SNV	Breast	C1RL_L279R_2	HLA-C07:02	IRTAAHTIY	0.8029	0.8285	0.3636	195.05	0.267	59.16	1/982	1/7748
SNV	Breast	DAXX_L143M_7	HLA-C12:03	HSAKKKMNL	0.676	0.9881	0.5679	180.13	0.6943	105.75	1/982	1/7748
SNV	Breast	DFNB59_E235Q_2	HLA-C12:03	FQREETATF	0.9961	0.9923	0.4673	16.91	0.1885	3.06	1/982	1/7748
SNV	Breast	DFNB59_E67K_1	HLA-C12:03	KISAGISSY	0.5488	0.9482	0.5413	80.4	0.4684	3.06	1/982	1/7748
SNV	Breast	GGT7_A327T_5	HLA-C12:03	AAFYTGGNL	0.961	0.9919	0.4406	24.86	0.2423	27.22	1/982	1/7748
SNV	Breast	GGT7_A327T_3	HLA-C12:03	FYTGGNLTL	0.5587	0.9903	1.3575	324.22	0.9053	27.22	1/982	1/7748
SNV	Breast	HRASLS2_E63K_5	HLA-C12:03	IVKKKLLSV	0.9176	0.942	0.8845	345.16	0.9289	20.75	1/982	1/7748
SNV	Breast	MALT1_D638G_8	HLA-C07:02	YVTDFPLGL	0.8383	0.9799	1.7665	67.38	0.1588	7.89	1/982	1/7748
SNV	Breast	MALT1_D638G_8	HLA-C12:03	YVTDFPLGL	0.9942	0.9892	0.0922	4.79	0.0566	7.89	1/982	1/7748
SNV	Breast	PCDHGB7_G585V_6	HLA-C12:03	RAAQPVYLV	0.6227	0.9812	0.327	31.22	0.2846	5.37	1/982	1/7748
SNV	Breast	RUFY1_S283P_6	HLA-C12:03	GVIDFPLYL	0.9856	0.9791	0.339	5.09	0.0612	48.46	1/982	1/7748
SNV	Breast	TLR3_H563Y_9	HLA-C07:02	IYFLKGLSY	0.6479	0.7842	0.2294	9.86	0.0482	8.91	1/982	1/7748
SNV	Breast	TLR3_H563Y_3	HLA-C12:03	LSYLHILNL	0.9976	0.9795	0.143	27.27	0.2581	8.91	1/982	1/7748
SNV	Breast	TMEM5_A247T_1	HLA-C12:03	TTYRNFPVV	0.9499	0.9876	0.6284	95.76	0.5106	8.85	1/982	1/7748
SNV	Breast	TMEM5_A247T_8	HLA-C12:03	FQWPLGVTTY	0.9947	0.9901	0.934	386.64	0.9717	8.85	1/982	1/7748
SNV	Breast	BSDC1_E369Q_9	HLA-B07:02	APTDLRVFQL	0.9977	0.728	0.2178	4.52	0.0706	84.08	1/982	1/7748
SNV	Breast	DDX10_D15G_3	HLA-B07:02	RPGPVRSF	0.9994	0.6828	0.3625	26.91	0.1712	8.87	1/982	1/7748
SNV	Breast	DDX10_D15G_5	HLA-B57:03	GARPGPVRSF	0.97	0.9868	0.7332	190.87	0.4187	8.87	1/982	1/7748
SNV	Breast	DDX10_D15G_4	HLA-C07:02	ARPGPVRSF	0.8329	0.9796	0.024	11.84	0.0557	8.87	1/982	1/7748
SNV	Breast	MKI67_K254N_3	HLA-C07:02	SQNENVLQY	0.8262	0.9053	0.0756	477.52	0.3906	19.58	1/982	1/7748
SNV	Breast	PLEKHG4B_V1022M_6	HLA-C07:02	KYLRHMFLF	0.59	0.8935	1.1101	303.45	0.3237	14.27	1/982	1/7748
SNV	Breast	RNF220_R75W_9	HLA-B57:03	YTFASMYHW	0.9507	0.9124	0.0013	1.94	0.0151	20.54	1/982	1/7748
SNV	Breast	SPRTN_R140H_5	HLA-C07:02	KHMHHINSL	0.8057	0.8852	0.0158	55.69	0.1425	5.4	1/982	1/7748
SNV	Breast	ZMYM1_H328R_3	HLA-B07:02	VVRDTSTEL	0.9977	0.6484	0.1843	14.13	0.1373	7.05	1/982	1/7748
SNV	Breast	ZMYM1_H328R_2	HLA-C07:02	VRDTSTELL	0.7884	0.9347	0.1675	471.32	0.3887	7.05	1/982	1/7748
SNV	Breast	ABCA2_R1057H_6	HLA-C03:04	YGHDIHTEM	0.9997	0.9575	0.0253	2.52	0.0265	13.03	1/982	1/7748
SNV	Breast	ABCA2_R1057H_6	HLA-C16:01	YGHDIHTEM	0.9944	0.9732	0.0471	3.82	0.034	13.03	1/982	1/7748
SNV	Breast	ACOT9_T273S_6	HLA-C03:04	TLDPKSISF	0.9959	0.9847	0.1739	103.55	0.2781	10.71	1/982	1/7748
SNV	Breast	ACOT9_T273S_6	HLA-C16:01	TLDPKSISF	0.9778	0.9651	0.1668	18.13	0.1601	10.71	1/982	1/7748
SNV	Breast	ACOT9_T273S_7	HLA-C16:01	STLDPKSISF	0.9986	0.9595	0.1509	487.7	0.8358	10.71	1/982	1/7748
SNV	Breast	BAIAP3_A694S_7	HLA-A02:01	ALAGIHSPFL	0.9936	0.7621	0.4216	50.62	0.304	8.44	1/982	1/7748
SNV	Breast	CBLN4_R158H_1	HLA-B44:03	HEAATNGVLLY	0.9954	0.9583	0.062	63.58	0.2497	1.18	1/982	1/7748
SNV	Breast	CDH17_K552N_5	HLA-C03:04	SSFANFTLI	0.9896	0.9852	0.2163	152.28	0.324	1.17	1/982	1/7748
SNV	Breast	CDH17_K552N_5	HLA-C16:01	SSFANFTL	0.9859	0.9775	0.5074	243.97	0.6331	1.17	1/982	1/7748
SNV	Breast	CDH17_K552N_6	HLA-C16:01	ASSFANFTL	0.9482	0.9833	0.1849	84.1	0.3897	1.17	1/982	1/7748
SNV	Breast	CDH17_K552N_5	HLA-C16:01	SSFANFTLI	0.8373	0.9752	0.2251	55.21	0.304	1.17	1/982	1/7748
SNV	Breast	EHMT2_N528Y_5	HLA-C16:01	VSQLYGMVF	0.6705	0.9594	0.257	191.84	0.5695	57.44	1/982	1/7748
SNV	Breast	FOXD3_N227S_7	HLA-B44:03	SEDMFDSGSF	0.9956	0.9736	0.126	130.15	0.3032	3.93	1/982	1/7748
SNV	Breast	HSD17B3_A203V_9	HLA-C03:04	YSMYSASKV	0.9405	0.9924	1.1986	284.92	0.4116	4.52	1/982	1/7748
SNV	Breast	HSD17B3_A203V_8	HLA-C03:04	SMYSASKVF	0.931	0.9881	1.8029	202.46	0.363	4.52	1/982	1/7748
SNV	Breast	HSD17B3_A203V_9	HLA-C16:01	YSMYSASKV	0.8377	0.9829	1.3165	184.94	0.5607	4.52	1/982	1/7748
SNV	Breast	HSD17B3_A203V_8	HLA-C16:01	SMYSASKVF	0.8525	0.9764	0.6254	25.38	0.1926	4.52	1/982	1/7748
SNV	Breast	LRRC43_F128V_4	HLA-C03:04	YSYVRSLRV	0.801	0.9819	0.7013	377.18	0.457	4	1/982	1/7748
SNV	Breast	LRRC43_F128V_6	HLA-C16:01	FFYSYVRSL	0.763	0.9817	1.6854	69.04	0.3495	4	1/982	1/7748
SNV	Breast	LRRC43_F128V_4	HLA-C16:01	YSYVRSLRV	0.8148	0.9613	0.4145	26.71	0.1975	4	1/982	1/7748
SNV	Breast	MICU1_S8F_6	HLA-A02:01	SLFALAELA	0.9861	0.5754	0.2542	286.16	0.565	45.12	1/982	1/7748
SNV	Breast	MICU1_S8F_6	HLA-A02:01	SLFALAELAV	0.9938	0.6762	0.2016	376.73	0.613	45.12	1/982	1/7748
SNV	Breast	PRAM1_P163L_9	HLA-C03:04	ASLPEPGAL	0.9989	0.997	0.1144	54.61	0.211	1.93	1/982	1/7748
SNV	Breast	PRAM1_P163L_9	HLA-C16:01	ASLPEPGAL	0.8387	0.9904	0.1226	33.53	0.2312	1.93	1/982	1/7748
SNV	Breast	RBMS3_Q26K_1	HLA-C16:01	KSYAPAPHPM	0.9982	0.9533	0.1253	277.4	0.6706	2.63	1/982	1/7748
SNV	Breast	RDH13_G254R_6	HLA-C16:01	SSTTLRPIF	0.6215	0.9617	0.7761	476.06	0.828	9.98	1/982	1/7748
SNV	Breast	TMEM182_V23M_1	HLA-C03:04	MAFGSDYWL	0.9973	0.9871	0.4546	117.2	0.291	1.4	1/982	1/7748
SNV	Breast	TMEM182_V23M_1	HLA-C16:01	MAFGSDYWL	0.9299	0.9881	0.667	293.75	0.6873	1.4	1/982	1/7748
SNV	Breast	TNS2_C351S_2	HLA-C03:04	LSISLEPAL	0.9996	0.9878	0.2016	117.98	0.2917	33.89	1/982	1/7748
SNV	Breast	TNS2_C351S_2	HLA-C16:01	LSISLEPAL	0.8987	0.9872	0.2915	326.28	0.7174	33.89	1/982	1/7748
SNV	Breast	TUBA1C_I341F_9	HLA-C16:01	ATIKTKRTF	0.6143	0.9865	0.3277	85.88	0.3939	58.36	1/982	1/7748
SNV	Breast	UBE3B_L235V_7	HLA-C03:04	LTAAFSVAL	0.9993	0.9894	0.1349	17.72	0.1281	17.03	1/982	1/7748
SNV	Breast	UBE3B_L235V_3	HLA-C03:04	FSVALRPVI	0.9989	0.9792	0.3901	355.92	0.4476	17.03	1/982	1/7748
SNV	Breast	UBE3B_L235V_7	HLA-C16:01	LTAAFSVAL	0.9868	0.9729	0.106	10.89	0.1066	17.03	1/982	1/7748
SNV	Breast	VPS8_A159G_6	HLA-C16:01	AGLPTGIAV	0.646	0.9956	1.2854	112.03	0.4487	14.59	1/982	1/7748
SNV	Breast	VRK2_H316N_5	HLA-A02:01	ILNPNGIPL	0.9886	0.5136	0.581	13.15	0.1811	9.94	1/982	1/7748
SNV	Breast	VRK2_H316N_5	HLA-C03:04	ILNPNGIPL	0.978	0.9877	0.1787	10.93	0.0885	9.94	1/982	1/7748
SNV	Breast	VRK2_H316N_5	HLA-C16:01	ILNPNGIPL	0.9825	0.9757	0.4605	19.35	0.1666	9.94	1/982	1/7748
SNV	Breast	AMPD3_Y561H_1	HLA-C03:04	HMYANIMVL	0.9939	0.9784	0.1919	8.71	0.0737	3.07	1/982	1/7748
SNV	Breast	AMPD3_Y561H_1	HLA-C15:02	HMYANIMVL	0.9895	0.7768	0.6021	75.86	0.3438	3.07	1/982	1/7748
SNV	Breast	ARHGAP32_M1264I_9	HLA-C15:02	TSTATMTYI	0.9979	0.78	0.6993	299.56	0.6177	29.08	1/982	1/7748
SNV	Breast	BTBD19_E222K_8	HLA-C03:04	VAAPVVKKL	0.9995	0.9936	0.0179	3.78	0.038	8.35	1/982	1/7748
SNV	Breast	BTBD19_E222K_8	HLA-C15:02	VAAPVVKKL	0.999	0.9573	0.0274	11.25	0.0901	8.35	1/982	1/7748
SNV	Breast	CCDC92_S29R_1	HLA-C03:04	RAQKNLLFL	0.9724	0.9847	0.131	309.53	0.425	32.53	1/982	1/7748
SNV	Breast	CCDC92_S29R_1	HLA-C15:02	RAQKNLLFL	0.9989	0.8509	0.0321	21.32	0.1524	32.53	1/982	1/7748
SNV	Breast	FOXO4_L396V_6	HLA-A02:06	SQAPTVLLL	0.9777	0.6209	0.5068	12.39	0.1341	30.68	1/982	1/7748
SNV	Breast	FOXO4_L396V_10	HLA-B51:02	DPILSQAPTV	0.9764	0.6834	0.456	231.52	0.3211	30.68	1/982	1/7748
SNV	Breast	FOXO4_L396V_8	HLA-C03:04	ILSQAPTVL	0.9694	0.9897	0.2574	27.43	0.1604	30.68	1/982	1/7748
SNV	Breast	FOXO4_L396V_7	HLA-C03:04	LSQAPTVLL	0.9996	0.9889	0.1275	333.67	0.4372	30.68	1/982	1/7748
SNV	Breast	FOXO4_L396V_6	HLA-C03:04	SQAPTVLLL	0.9915	0.989	0.5399	149.87	0.3218	30.68	1/982	1/7748
SNV	Breast	FOXO4_L396V_8	HLA-C15:02	ILSQAPTVL	0.9079	0.8626	0.4989	88.25	0.3713	30.68	1/982	1/7748
SNV	Breast	FOXO4_L396V_7	HLA-C15:02	LSQAPTVLL	0.9985	0.8253	0.0441	13.35	0.1058	30.68	1/982	1/7748
SNV	Breast	FOXO4_L396V_6	HLA-C15:02	SQAPTVLLL	0.9958	0.8197	0.393	82.66	0.3594	30.68	1/982	1/7748
SNV	Breast	IGKV1D-16_S98I_9	HLA-C15:02	GTDFTLTII	0.9674	0.881	0.6275	308.61	0.6275	2.11	1/982	1/7748
SNV	Breast	KIAA0513_A18V_9	HLA-A02:06	SLIDFGPEV	0.9989	0.8487	0.0065	1.08	0.0027	5.62	1/982	1/7748
SNV	Breast	KIAA0513_A18V_9	HLA-C03:04	SLIDFGPEV	0.5372	0.9907	0.5931	105.48	0.28	5.62	1/982	1/7748
SNV	Breast	KIAA0513_A18V_9	HLA-C15:02	SLIDFGPEV	0.9835	0.8949	0.362	18.45	0.1381	5.62	1/982	1/7748
SNV	Breast	MEIS3_D301H_4	HLA-B51:02	LAQHTGLTI	0.9893	0.5963	0.0754	38.19	0.1326	41.59	1/982	1/7748
SNV	Breast	MEIS3_D301H_4	HLA-C03:04	LAQHTGLTI	0.9961	0.9722	0.0717	52.19	0.2063	41.59	1/982	1/7748
SNV	Breast	MEIS3_D301H_4	HLA-C15:02	LAQHTGLTI	0.998	0.846	0.0956	112.96	0.4159	41.59	1/982	1/7748
SNV	Breast	MEIS3_D301H_1	HLA-C15:02	HTGLTILQV	0.995	0.9607	0.2796	176.51	0.4949	41.59	1/982	1/7748
SNV	Breast	P3H1_S469F_6	HLA-A02:06	KLLNGFQRV	0.9979	0.904	0.1304	2.58	0.0328	32.03	1/982	1/7748
SNV	Breast	PTPRK_I867V_7	HLA-A02:06	GQLHPAVRV	0.9257	0.9007	1.1665	26.63	0.1857	25.38	1/982	1/7748
SNV	Breast	ZNF507_D552N_4	HLA-C03:04	NSSNGLTSL	0.9986	0.9812	0.2055	308.33	0.4244	6.85	1/982	1/7748
SNV	Breast	ADH5_D125N_3	HLA-B35:01	MPNGTSRF	0.9968	0.9419	1.145	74.39	0.2798	48.56	1/982	1/7748
SNV	Breast	AEBP1_S667L_3	HLA-B35:01	VPLLNPDGY	0.9876	0.5293	0.0664	3.37	0.0654	374.6	1/982	1/7748
SNV	Breast	AIM1_Q1699E_4	HLA-C07:04	QYDENHIIL	0.8515	0.9525	0.0166	259.41	0.0098	14.8	1/982	1/7748
SNV	Breast	AIM1_Q1699E_4	HLA-C04:01	QYDENHIIL	0.9989	0.7838	0.0066	2.42	0.0064	14.8	1/982	1/7748
SNV	Breast	ANXA1_D200N_3	HLA-B35:01	LANSDARAL	0.9025	0.8463	0.7725	430.98	0.4703	84.97	1/982	1/7748
SNV	Breast	ANXA1_D200N_3	HLA-B35:01	LANSDARALY	0.9945	0.8659	0.6606	402.12	0.4616	84.97	1/982	1/7748
SNV	Breast	CAMSAP2_H391Y_9	HLA-B35:01	EGATFTQSY	0.9495	0.7347	0.2374	71.89	0.2767	16.41	1/982	1/7748
SNV	Breast	CAPRIN1_E381K_5	HLA-C04:01	MLDFKNQTL	0.9999	0.8496	0.0129	71.52	0.0647	123.29	1/982	1/7748
SNV	Breast	CDH1_G278V_5	HLA-B35:01	GALPVTSVM	0.9849	0.8887	0.312	329.81	0.4365	191.03	1/982	1/7748
SNV	Breast	CDH1_G278V_3	HLA-B35:01	LPVTSVMEV	0.956	0.8574	0.1373	368.77	0.4506	191.03	1/982	1/7748
SNV	Breast	DBH_A270T_6	HLA-A26:01	EVFQCTPEM	0.9986	0.527	0.0166	78.54	0.1111	1.43	1/982	1/7748
SNV	Breast	DBH_A270T_1	HLA-B35:01	TPEMDSVPHF	0.9948	0.9358	0.4365	49.97	0.2445	1.43	1/982	1/7748
SNV	Breast	ECD_Q422E_4	HLA-B35:01	SPDELDQLL	0.857	0.828	0.509	67.17	0.2706	28.38	1/982	1/7748
SNV	Breast	ECD_Q422E_8	HLA-C04:01	WLDLSPDEL	0.9995	0.8759	0.0727	374.97	0.1337	28.38	1/982	1/7748
SNV	Breast	ESPN_R403T_1	HLA-B35:01	TAADIQSY	0.982	0.8636	0.909	35.52	0.2171	41.33	1/982	1/7748
SNV	Breast	ESPN_R403T_2	HLA-B35:01	ATAADIQSY	0.9513	0.8298	0.4908	143.4	0.3443	41.33	1/982	1/7748
SNV	Breast	ESPN_R403T_1	HLA-B35:01	TAADIQSYM	0.9936	0.8835	0.2931	6.9	0.1056	41.33	1/982	1/7748
SNV	Breast	ESPN_R403T_3	HLA-B35:01	SATAADIQSY	0.9618	0.7489	0.5944	158.03	0.3543	41.33	1/982	1/7748
SNV	Breast	EVC_S437I_6	HLA-B35:01	EAERFIREF	0.9328	0.7688	0.909	457.64	0.4779	6.29	1/982	1/7748
SNV	Breast	FAM129A_G68A_7	HLA-B35:01	KPPLAPATILY	0.9884	0.8138	1.1809	186.88	0.3715	62.09	1/982	1/7748
SNV	Breast	FAM65C_E141K_7	HLA-B35:01	HISKVDKLY	0.8441	0.6032	0.5225	340.3	0.4405	1.54	1/982	1/7748
SNV	Breast	FUBP1_D581N_7	HLA-B35:01	APAGQVNY	0.8941	0.9067	1.3194	425.29	0.4686	71.11	1/982	1/7748
SNV	Breast	FUBP1_D581N_9	HLA-B35:01	NPAPAGQVNY	0.966	0.7084	0.1984	2.36	0.0456	71.11	1/982	1/7748
SNV	Breast	GLCE_S469L_1	HLA-B35:01	LALRATAPY	0.9866	0.8959	0.0283	51.35	0.2467	48.04	1/982	1/7748
SNV	Breast	HSPA12A_S436T_2	HLA-A26:01	WTSQGMLRM	0.9229	0.7487	0.1211	415.56	0.2201	3.57	1/982	1/7748
SNV	Breast	HSPA8_Q58E_6	HLA-B35:01	DAAKNEVAM	0.9453	0.9307	0.2233	7.17	0.1079	554.78	1/982	1/7748
SNV	Breast	IARS_T777A_5	HLA-B35:01	TPFLAELMY	0.9984	0.8015	0.0283	1.79	0.0318	45.91	1/982	1/7748
SNV	Breast	INVS_D387N_1	HLA-B35:01	NVMKHTPLF	0.9884	0.9154	0.1595	49.53	0.2438	5.68	1/982	1/7748
SNV	Breast	KANSL1_M786I_9	HLA-C04:01	VHDPNHSKI	0.9902	0.6394	0.0744	355.95	0.1299	16.31	1/982	1/7748
SNV	Breast	MAGIX_S299F_9	HLA-B35:01	DPNDQIPGF	0.9606	0.938	0.1866	9.79	0.1266	8.21	1/982	1/7748
SNV	Breast	MAP2_G993A_6	HLA-B35:01	ETFGLAVTY	0.9506	0.9703	0.1427	4.68	0.0868	1.29	1/982	1/7748
SNV	Breast	MYNN_L538F_9	HLA-B35:01	DSSAEDHTF	0.7009	0.7994	0.3751	102.88	0.3103	15.11	1/982	1/7748
SNV	Breast	NCOA2_S655L_3	HLA-B35:01	EPLPLASSL	0.9849	0.8148	0.2529	20.57	0.1779	14.03	1/982	1/7748
SNV	Breast	PHYKPL_E247K_4	HLA-B35:01	VADKIQVGF	0.9363	0.8802	0.3098	118.86	0.3251	15.8	1/982	1/7748
SNV	Breast	PHYKPL_E247K_4	HLA-C04:01	VADKIQVGF	0.9998	0.9171	0.0968	494.26	0.1541	15.8	1/982	1/7748
SNV	Breast	PLXNA2_S43F_9	HLA-B35:01	MPQFSTFHF	0.9985	0.9348	0.0024	2.62	0.0511	13.19	1/982	1/7748
SNV	Breast	PLXNA2_S43F_2	HLA-C04:01	HFENRDWTF	0.9627	0.7424	0.1424	75.73	0.0666	13.19	1/982	1/7748
SNV	Breast	PPP2CA_L103F_9	HLA-A26:01	ETVTLLVAF	0.9979	0.7994	0.0063	2.84	0.0099	126.78	1/982	1/7748
SNV	Breast	PREX2_R484K_8	HLA-A26:01	DVISKGVKL	0.9972	0.5484	0.122	58.49	0.0964	2.95	1/982	1/7748
SNV	Breast	PRPF39_E57Q_6	HLA-B35:01	NASTEQTEM	0.9262	0.8381	0.478	199.69	0.3783	20.58	1/982	1/7748
SNV	Breast	PTPRG_L221F_9	HLA-C04:01	ALDPIIHGF	0.9991	0.6327	0.0251	7.06	0.0166	6.43	1/982	1/7748
SNV	Breast	PTPRR_S578F_9	HLA-B35:01	DVEEDRLAF	0.9559	0.8443	0.4705	11.05	0.1367	1.69	1/982	1/7748
SNV	Breast	RALGPS1_E73Q_1	HLA-A11:01	QLASCGWSK	0.9955	0.5363	0.1283	309.69	0.477	8.27	1/982	1/7748
SNV	Breast	SEC22A_S19F_4	HLA-B35:01	LPLFASTDY	0.998	0.6819	0.0121	2.22	0.0423	12.16	1/982	1/7748
SNV	Breast	SENP7_L59V_1	HLA-B35:01	VPLQWERSL	0.94	0.8928	0.3529	270.76	0.4117	12.7	1/982	1/7748
SNV	Breast	SLC30A4_R205T_5	HLA-B35:01	EAVQTTIHM	0.9847	0.7596	0.1311	15.06	0.1589	3.2	1/982	1/7748
SNV	Breast	SLC30A4_R205T_7	HLA-C04:01	LYEAVQTTI	0.941	0.8583	0.1289	106.18	0.0754	3.2	1/982	1/7748
SNV	Breast	SON_E1152K_4	HLA-B35:01	LPPKEPPTM	0.9863	0.9643	0.2374	20.37	0.1773	65.48	1/982	1/7748
SNV	Breast	SSC5D_D1318N_3	HLA-B35:01	TPNPTTTPH	0.8996	0.8404	0.3276	476.09	0.4828	7.93	1/982	1/7748
SNV	Breast	STAT4_E302K_5	HLA-B15:09	THMLKRVTF	0.8974	0.6398	0.257	483.49	0.0399	8.77	1/982	1/7748
SNV	Breast	SYNE3_E804K_3	HLA-B15:09	SHKDFSQLL	0.9705	0.769	0.0253	295.38	0.0313	2.86	1/982	1/7748
SNV	Breast	TAF2_E172K_3	HLA-B35:01	MAKRGAHVF	0.9745	0.9026	0.061	16.04	0.1627	14.37	1/982	1/7748
SNV	Breast	TFAP4_F4L_6	HLA-B35:01	VPTQKVPSL	0.9773	0.8249	0.298	84.61	0.2914	5.04	3/982	3/7748
SNV	Breast	TFAP4_F4L_6	HLA-B35:01	VPTQKVPSL	0.9773	0.8249	0.298	84.61	0.2914	5.04	3/982	3/7748
SNV	Breast	TFAP4_F4L_6	HLA-B35:01	VPTQKVPSL	0.9773	0.8249	0.298	84.61	0.2914	5.04	3/982	3/7748
SNV	Breast	TMEM145_D58Y_9	HLA-B35:01	FLSDYGRLY	0.9142	0.6865	0.3276	62.79	0.2645	4	1/982	1/7748
SNV	Breast	TNXB_E753K_5	HLA-B35:01	VPTIKGMRM	0.9058	0.7987	0.4908	82.94	0.2896	4.51	1/982	1/7748
SNV	Breast	TSPAN32_R305K_9	HLA-A11:01	AAHRALQGK	0.9907	0.6774	0.1935	291.37	0.4674	3.41	1/982	1/7748
SNV	Breast	VPS13D_P3515S_3	HLA-B35:01	LPSPFRIDNF	0.9894	0.7798	0.2574	418.25	0.4665	12.12	1/982	1/7748
SNV	Breast	WDR6_D624N_3	HLA-B35:01	VPNGSMVIL	0.973	0.6573	0.2389	10.28	0.1307	79.53	1/982	1/7748
SNV	Breast	YLPM1_P1332S_1	HLA-B35:01	SPLPPLPPL	0.9907	0.9607	0.1249	52.16	0.248	15.51	1/982	1/7748
SNV	Breast	ZNF366_E94Q_9	HLA-B35:01	MPYNHPAEQ	0.9489	0.9069	0.291	194.47	0.3756	3.29	1/982	1/7748
SNV	Breast	ZNF366_E94Q_5	HLA-B35:01	HPAEQVTLA	0.9521	0.6614	0.3565	186.12	0.3711	3.29	1/982	1/7748
SNV	Breast	ZNF366_E94Q_5	HLA-B35:01	HPAEQVTLAL	0.9943	0.6799	0.298	16.56	0.1646	3.29	1/982	1/7748
SNV	Breast	ZNF366_E94Q_6	HLA-B15:09	NHPAEQVTL	0.9543	0.7196	0.0559	160.86	0.0197	3.29	1/982	1/7748
SNV	Breast	DIS3L_F610L_9	HLA-A02:01	SVVDDIPEL	0.9805	0.5202	0.4301	5.26	0.1079	13.46	1/982	1/7748
SNV	Breast	DIS3L_F610L_11	HLA-A02:01	NLSVVDDIPEL	0.9589	0.6038	1.5309	226.89	0.5274	13.46	1/982	1/7748
SNV	Breast	IREB2_S715A_9	HLA-A02:01	VLFPWDLKA	0.9938	0.8427	0.1121	5.25	0.1078	8.94	1/982	1/7748
SNV	Breast	IREB2_S715A_7	HLA-B53:01	FPWDLKATY	0.9953	0.5239	0.001	1.41	0.0046	8.94	1/982	1/7748
SNV	Breast	KAZN_E273D_8	HLA-B53:01	TVLNGNQDW	0.7144	0.6471	0.4502	461.25	0.3163	9.17	1/982	1/7748
SNV	Breast	RANBP3_R90P_7	HLA-A02:01	QLPPFPPEL	0.9892	0.8071	0.3756	6.73	0.126	14.18	1/982	1/7748
SNV	Breast	RANBP3_R90P_8	HLA-A02:01	AQLPPFPPEL	0.9518	0.8436	1.4338	205.21	0.5111	14.18	1/982	1/7748
SNV	Breast	SAV1_F116L_2	HLA-A02:01	SLVTEVSFA	0.9767	0.6676	0.2478	251.76	0.5442	20.11	1/982	1/7748
SNV	Breast	SAV1_F116L_1	HLA-A02:01	LVTEVSFAV	0.9946	0.6278	0.0835	299.25	0.5722	20.11	1/982	1/7748
SNV	Breast	SAV1_F116L_2	HLA-A02:01	SLVTEVSFAV	0.9966	0.6379	0.0914	115.1	0.4128	20.11	1/982	1/7748
SNV	Breast	THEM4_D116H_2	HLA-C04:01	FHDGLGFEY	0.9522	0.786	0.3086	353.57	0.1294	14.63	1/982	1/7748
SNV	Breast	USP20_A65V_9	HLA-C04:01	FADHSTIHV	0.9999	0.6688	0.0439	422.32	0.1423	23.69	1/982	1/7748
SNV	Breast	FASN_L2464V_6	HLA-C08:02	GADYNVSQV	0.9996	0.9825	0.0686	358.05	0.1203	529.4	1/982	1/7748
SNV	Breast	CEP170B_F404L_8	HLA-A02:01	LLHNQQALV	0.9861	0.6863	0.2794	390.4	0.6209	34.45	1/982	1/7748
SNV	Breast	EFEMP2_V368I_2	HLA-C16:01	SIYPGAYNAF	0.998	0.9615	0.5074	140.95	0.496	33.97	1/982	1/7748
SNV	Breast	AATK_R133L_7	HLA-A32:01	YLKEIGLGW	0.9464	0.9307	0.1095	27.19	0.0729	2.05	1/982	1/7748
SNV	Breast	AATK_R133L_7	HLA-B58:01	YLKEIGLGW	0.9533	0.927	0.1515	35.49	0.2584	2.05	1/982	1/7748
SNV	Breast	CMPK1_S147F_5	HLA-B58:01	KADVFFVLF	0.9854	0.8221	0.1104	157	0.4567	186.48	1/982	1/7748
SNV	Breast	CMPK1_S147F_10	HLA-B58:01	KTMDGKADVF	0.9975	0.8237	0.2104	16.85	0.1859	186.48	1/982	1/7748
SNV	Breast	CMPK1_S147F_10	HLA-B58:01	KTMDGKADVFF	0.9996	0.8147	0.1799	104.57	0.3986	186.48	1/982	1/7748
SNV	Breast	DOPEY1_M1719R_8	HLA-B58:01	ASIIPPDRI	0.8987	0.7485	1.8287	318.61	0.5703	11.37	1/982	1/7748
SNV	Breast	NAALADL2_P648H_8	HLA-A32:01	IANEPVLHF	0.9685	0.944	0.2711	131.91	0.1664	12.17	1/982	1/7748
SNV	Breast	NAALADL2_P648H_8	HLA-B58:01	IANEPVLHF	0.9957	0.8368	0.0462	2.04	0.0294	12.17	1/982	1/7748
SNV	Breast	PSMD12_Q26H_7	HLA-B58:01	YSATVDHRL	0.918	0.8327	0.5979	61.36	0.3286	79.03	1/982	1/7748
SNV	Breast	PSMD12_Q26H_1	HLA-C07:01	HRLPECAKL	0.9968	0.8875	0.0456	377.41	0.1548	79.03	1/982	1/7748
SNV	Breast	SCN4A_T299M_8	HLA-B58:01	TTWYSNDMW	0.994	0.9718	0.0301	2.06	0.0296	4.87	1/982	1/7748
SNV	Breast	SCN4A_T299M_2	HLA-B58:01	DMWYGNDTW	0.7388	0.9765	0.5058	437.86	0.6324	4.87	1/982	1/7748
SNV	Breast	SLC35E2B_E257D_6	HLA-A32:01	RFSAPDLQF	0.866	0.9217	0.8934	264.48	0.2245	27.76	1/982	1/7748
SNV	Breast	SLC35E2B_E257D_5	HLA-B58:01	FSAPDLQFY	0.9812	0.7079	0.0814	11.04	0.1476	27.76	1/982	1/7748
SNV	Breast	SLC35E2B_E257D_7	HLA-C07:01	YRFSAPDLQF	0.9995	0.5612	0.0313	16.96	0.0337	27.76	1/982	1/7748
SNV	Breast	SPHK2_G256V_2	HLA-B58:01	NVLLDRPDW	0.9337	0.9796	0.3324	327.78	0.5752	10.08	1/982	1/7748
SNV	Breast	XKR6_Q614R_7	HLA-A32:01	RTINILRYV	0.9894	0.9593	0.1095	132.51	0.1668	1.2	1/982	1/7748
SNV	Breast	XKR6_Q614R_7	HLA-B58:01	RTINILRY	0.9966	0.8591	1.863	104.78	0.3989	1.2	1/982	1/7748
SNV	Breast	XKR6_Q614R_7	HLA-B58:01	RTINILRYV	0.9822	0.7903	0.4861	424.97	0.6258	1.2	1/982	1/7748
SNV	Breast	XKR6_Q614R_8	HLA-C07:01	RRTINILRY	0.9956	0.6892	0.1701	209.76	0.1176	1.2	1/982	1/7748
SNV	Breast	XKR6_Q614R_2	HLA-C07:01	LRYVTPTAV	0.9645	0.7635	0.0907	58.61	0.0707	1.2	1/982	1/7748
SNV	Breast	MYLK_G1639S_2	HLA-B57:03	ISYATDMW	0.9986	0.9577	1.1264	18.86	0.1413	13.81	1/982	1/7748
SNV	Breast	NCEH1_K255I_1	HLA-A02:01	ILQALIYPV	0.9958	0.5129	0.0088	28.58	0.2476	31.97	1/982	1/7748
SNV	Breast	SLC2A6_A124V_1	HLA-A02:01	VLMAGAHGL	0.9814	0.5201	0.0338	2.35	0.053	24.32	1/982	1/7748
SNV	Breast	CAPN2_I687V_1	HLA-B45:01	VELDLISWL	0.76	0.9236	0.379	394.12	0.3402	111.42	1/982	1/7748
SNV	Breast	CCDC24_R47P_7	HLA-B45:01	AEVAMLPAL	0.9681	0.9422	0.0558	12.05	0.0607	32.14	1/982	1/7748
SNV	Breast	CDHR4_L717Q_8	HLA-A02:01	LLQGLAQQL	0.9838	0.6748	0.5055	203.84	0.51	5.08	1/982	1/7748
SNV	Breast	CEP170B_R20W_4	HLA-A02:01	RLPWELIFV	0.9921	0.6702	0.0338	6.17	0.1195	46.2	1/982	1/7748
SNV	Breast	IGKV1-16_A47V_1	HLA-C17:01	VSQGISNYL	0.5198	0.7003	0.2884	210.24	0.3125	126.38	1/982	1/7748
SNV	Breast	IGKV1-16_A47V_2	HLA-C16:01	RVSQGISNY	0.5471	0.941	1.0913	368.15	0.7516	126.38	1/982	1/7748
SNV	Breast	IGKV1-16_A47V_1	HLA-C16:01	VSQGISNYL	0.8733	0.9595	0.3277	53.26	0.2978	126.38	1/982	1/7748
SNV	Breast	MYO10_E995A_5	HLA-B45:01	EEVDAGFEA	0.9968	0.9273	0.009	4	0.0187	10.07	1/982	1/7748
SNV	Breast	MYO10_E995A_6	HLA-B45:01	EEEVDAGFEA	0.9816	0.9507	0.1635	90.84	0.1939	10.07	1/982	1/7748
SNV	Breast	TMED3_T153M_1	HLA-C16:01	MVIDSQTHY	0.5867	0.9574	0.1001	261.25	0.6531	14.56	1/982	1/7748
SNV	Breast	TNS1_R1031Q_6	HLA-B45:01	VESVAQTAV	0.9968	0.8721	0.0138	31.53	0.1172	23.77	1/982	1/7748
SNV	Breast	TRIM72_R192H_4	HLA-A02:01	SLDHEAERV	0.994	0.7731	0.5156	29.98	0.2519	1.59	1/982	1/7748
SNV	Breast	ZNF233_C454Y_7	HLA-B45:01	GEKPYKYEV	0.9908	0.8767	0.1802	71.75	0.1748	3.48	1/982	1/7748
SNV	Breast	DAAM2_A2V_10	HLA-B07:02	VPRKRSHHGL	0.9972	0.736	0.1335	31.02	0.1788	4.02	1/982	1/7748
SNV	Breast	NCOA6_T883R_2	HLA-C07:01	LRSPLLVNL	0.9994	0.7396	0.0354	25.13	0.0436	34	1/982	1/7748
SNV	Breast	ANO10_L173M_3	HLA-B35:01	FPMHDSEAL	0.9966	0.9372	0.038	1.36	0.019	24.97	1/982	1/7748
SNV	Breast	ATXN7L2_R409W_4	HLA-B07:02	RPPWPQAF	0.9791	0.6152	0.5553	247.93	0.3402	9.77	1/982	1/7748
SNV	Breast	DCBLD2_S311L_9	HLA-B35:01	IADPQITAL	0.9791	0.839	0.3663	24.63	0.1899	31.63	1/982	1/7748
SNV	Breast	DCBLD2_S311L_9	HLA-C15:05	IADPQITAL	0.9993	0.9131	0.0003	1.88	0.0054	31.63	1/982	1/7748
SNV	Breast	DCBLD2_S311L_10	HLA-C15:05	VIADPQITAL	0.9993	0.9153	0.2451	121.88	0.2883	31.63	1/982	1/7748
SNV	Breast	DCBLD2_S311L_9	HLA-C04:01	IADPQITAL	0.9999	0.6732	0.005	53.02	0.057	31.63	1/982	1/7748
SNV	Breast	DENND1A_P900S_9	HLA-B35:01	MPNLFGQMSM	0.9974	0.9391	0.1624	43.13	0.2327	19.95	1/982	1/7748
SNV	Breast	NDUFAF1_T21A_5	HLA-B35:01	FSKPASALY	0.9907	0.8364	0.0357	22.38	0.1835	25.01	1/982	1/7748
SNV	Breast	NDUFAF1_T21A_3	HLA-B35:01	KPASALYPF	0.9903	0.8703	0.0545	8.29	0.1164	25.01	1/982	1/7748
SNV	Breast	OSCP1_R151Q_7	HLA-C15:05	QVDETLQQL	0.998	0.9518	0.0348	17.93	0.0849	7.2	1/982	1/7748
SNV	Breast	RPGR_S138F_3	HLA-C15:05	FTFEHKIKQL	0.9973	0.8536	0.1853	488.05	0.553	4.21	1/982	1/7748
SNV	Breast	VWDE_P317L_9	HLA-A02:01	YLRIESTVLI	0.9291	0.6744	1.7388	30.34	0.2531	4.64	1/982	1/7748
SNV	Breast	VWDE_P317L_7	HLA-C15:05	RIESTVLII	0.9898	0.9023	0.8267	204.95	0.3694	4.64	1/982	1/7748
SNV	Breast	BCL10_I86L_1	HLA-C07:02	LRREKTQNF	0.7702	0.9131	0.1399	37.28	0.1115	21.17	1/982	1/7748
SNV	Breast	C9orf64_N153D_3	HLA-C04:01	ILDETGKIL	0.9997	0.6661	0.0163	129.01	0.0801	17.72	1/982	1/7748
SNV	Breast	CNTNAP1_S692I_8	HLA-B35:01	TAGGYPYIF	0.9854	0.8129	0.6899	263.79	0.4084	4.24	1/982	1/7748
SNV	Breast	ENAH_P438S_8	HLA-C07:02	GRGNGPLSL	0.8638	0.9703	0.3121	196.36	0.2677	32.17	1/982	1/7748
SNV	Breast	EPHB1_E601G_2	HLA-B35:01	YGDPNEAVREF	0.9996	0.8905	1.4885	46.8	0.2392	1.16	1/982	1/7748
SNV	Breast	ESPN_S647T_1	HLA-B35:01	TPTGDNSEL	0.9074	0.864	0.4467	157.9	0.3542	4.34	1/982	1/7748
SNV	Breast	EXO1_G328R_2	HLA-C07:02	LRNKDINTF	0.8744	0.9433	0.0791	32.19	0.102	19.47	1/982	1/7748
SNV	Breast	FBRSL1_S494I_5	HLA-C07:02	FRHSIVSF	0.9993	0.7868	0.1481	118.54	0.2119	22.8	1/982	1/7748
SNV	Breast	FBRSL1_S494I_6	HLA-C07:02	YFRHSIVSF	0.7649	0.7339	0.0969	23.81	0.0852	22.8	1/982	1/7748
SNV	Breast	FBRSL1_S494I_5	HLA-C07:02	FRHSIVSFF	0.8623	0.8439	0.0003	3.01	0.0092	22.8	1/982	1/7748
SNV	Breast	FBRSL1_S494I_6	HLA-C07:02	YFRHSIVSFF	0.8915	0.8046	1.323	383.98	0.3585	22.8	1/982	1/7748
SNV	Breast	FBXL14_S287L_9	HLA-C07:02	LRLSGLDVL	0.8688	0.977	0.2811	327.99	0.3352	48.4	1/982	1/7748
SNV	Breast	GPR174_P123L_9	HLA-C07:02	RRFWFLMYL	0.9851	0.9407	0.0066	19.31	0.0756	8.09	1/982	1/7748
SNV	Breast	HRAS_G12C_5	HLA-A03:01	VVGACGVGK	0.9726	0.5449	0.3265	213.86	0.3718	87.08	1/982	1/7748
SNV	Breast	LCP1_L251V_9	HLA-C07:02	SRNEALIAV	0.9158	0.9789	0.2011	43.59	0.1217	199.95	1/982	1/7748
SNV	Breast	NUDT16_D52H_4	HLA-C07:02	MRFHGRLGF	0.8834	0.9445	0.0099	3.03	0.0093	8.33	1/982	1/7748
SNV	Breast	RASGRP3_L147Q_1	HLA-C04:01	QFDHLEPIEL	0.9996	0.9545	0.0594	296.3	0.1195	6.87	1/982	1/7748
SNV	Breast	RB1_V288E_5	HLA-B35:01	NIDEEKNVY	0.8826	0.8479	0.9603	18.78	0.1722	31.55	1/982	1/7748
SNV	Breast	RBM7_Q217H_7	HLA-C07:02	RHYSREHRY	0.8354	0.8804	0.2181	111.89	0.2057	9.44	1/982	2/7748
SNV	Breast	RPS29_L6M_6	HLA-C07:02	MYWSHPRKF	0.52	0.9441	0.002	3.2	0.0098	79.01	1/982	1/7748
SNV	Breast	SH3GLB2_F22L_9	HLA-C07:02	IFFTRAVQL	0.7977	0.8435	0.2011	16.99	0.0708	34.19	1/982	1/7748
SNV	Breast	SIRPG_F276V_4	HLA-C07:02	VRKVYPQSL	0.835	0.9138	0.0365	28.45	0.095	14.1	1/982	1/7748
SNV	Breast	SIRPG_F276V_2	HLA-C07:02	KVYPQSLQL	0.9732	0.9116	1.0346	32.49	0.1026	14.1	1/982	1/7748
SNV	Breast	SLC15A2_N78D_3	HLA-C04:01	HWDEDTSTSI	0.9998	0.5996	0.024	417.34	0.1415	1.75	1/982	1/7748
SNV	Breast	STON1_V352M_7	HLA-B35:01	TVKIEHMSY	0.9613	0.962	0.6026	459.67	0.4784	2.1	1/982	1/7748
SNV	Breast	SUN1_W323L_6	HLA-B35:01	LPVLNLASM	0.997	0.864	0.0416	3.2	0.0613	35.21	1/982	1/7748
SNV	Breast	TRIM24_G669C_3	HLA-B35:01	SPCLAGPVTM	0.9513	0.871	0.3663	140.46	0.3422	10.67	1/982	1/7748
SNV	Breast	ZC3H12A_P192A_7	HLA-B07:02	QPRPDVAI	0.9992	0.6912	0.634	95.35	0.26	18.84	1/982	1/7748
SNV	Breast	ZNF600_C453F_5	HLA-C07:02	KVFSFGSTL	0.891	0.9099	1.323	196.86	0.268	7.58	1/982	1/7748
SNV	Breast	ZNF91_G11E_8	HLA-B35:01	TPGSLEMEL	0.9358	0.7463	0.4229	321.44	0.4333	2.43	1/982	1/7748
SNV	Breast	ARHGEF28_V1403F_9	HLA-C07:02	SHIEIHRLF	0.6736	0.8788	0.2351	23.34	0.084	7.96	1/982	1/7748
SNV	Breast	CHCHD6_C197Y_7	HLA-C07:02	RRVEPVYSGL	0.99	0.9596	0.1449	319.8	0.3315	15.37	1/982	1/7748
SNV	Breast	DIXDC1_Y275C_8	HLA-B07:02	RPGSPGTCL	0.9994	0.5321	0.0209	2.16	0.036	11.16	1/982	1/7748
SNV	Breast	HIST1H4K_D69Y_9	HLA-C07:02	VFLENVIRY	0.5446	0.7285	0.5513	92.63	0.1868	2.65	1/982	1/7748
SNV	Breast	PPWD1_R90I_3	HLA-C07:02	MHIDVITHV	0.6461	0.9417	0.4095	423.95	0.3731	24.07	1/982	1/7748
SNV	Breast	ROPN1L_G159V_1	HLA-B07:02	VPARIPFKTF	0.9939	0.6435	0.3151	51.82	0.2088	2.78	1/982	1/7748
SNV	Breast	SIRPA_P280T_3	HLA-A23:01	FYTQRLQLTW	0.9937	0.5652	0.2985	187.16	0.5314	18.22	1/982	1/7748
SNV	Breast	SIRPA_P280T_6	HLA-C07:02	VRKFYTQRL	0.8812	0.9791	0.1575	91.53	0.1856	18.22	1/982	1/7748
SNV	Breast	SIRPA_P280T_4	HLA-C07:02	KFYTQRLQL	0.7503	0.9502	0.3636	27.25	0.0927	18.22	1/982	1/7748
SNV	Breast	SPOP_D140N_6	HLA-C07:02	KFIRRNFLL	0.6895	0.8649	1.0346	138.76	0.2289	51.31	1/982	2/7748
SNV	Breast	ZFYVE1_A581D_5	HLA-B07:02	GPTKDVTSWL	0.9386	0.581	1.2484	486.96	0.3996	30.29	1/982	1/7748
SNV	Breast	ELP2_F622S_3	HLA-B35:01	MASSPNEKF	0.9925	0.9016	0.0315	7.17	0.1079	52.16	1/982	1/7748
SNV	Breast	NFE2L3_I309V_9	HLA-B14:02	YHVNFSQAV	0.9932	0.946	0.0561	456.89	0.0826	107.26	1/982	1/7748
SNV	Breast	PTPN2_A300T_1	HLA-C04:01	TFDHSPNKI	0.9987	0.5987	0.0029	5.35	0.0131	20.16	1/982	1/7748
SNV	Breast	PTPN2_A300T_1	HLA-C04:01	TFDHSPNKIM	0.9994	0.6177	0.0385	393.35	0.1372	20.16	1/982	1/7748
SNV	Breast	TUBGCP2_A110G_6	HLA-C08:02	RAELAGAAV	0.996	0.9953	0.306	291.46	0.1126	49.57	1/982	1/7748
SNV	Breast	ATP7A_D782E_4	HLA-C06:02	TFFETPPML	0.6156	0.9855	0.1958	257.36	0.1461	18.62	1/982	1/7748
SNV	Breast	COL4A3BP_L507F_9	HLA-B35:01	WPASQRDVF	0.9962	0.8717	0.0754	2.29	0.0441	23.25	1/982	1/7748
SNV	Breast	COL4A3BP_L507F_9	HLA-B35:01	WPASQRDVFY	0.9979	0.8371	0.1311	41.04	0.2287	23.25	1/982	1/7748
SNV	Breast	FAM160B1_F110L_7	HLA-B15:03	KQQVLVLY	0.8273	0.5113	1.0421	84.82	0.5155	9.01	1/982	1/7748
SNV	Breast	FAM160B1_F110L_8	HLA-B15:03	MKQQVLVLY	0.5023	0.5689	0.319	17.01	0.2354	9.01	1/982	1/7748
SNV	Breast	FIBP_R21C_9	HLA-A02:01	TLIDEDVYC	0.954	0.514	1.3365	80.77	0.3641	40.2	1/982	1/7748
SNV	Breast	FIBP_R21C_8	HLA-A02:01	LIDEDVYCL	0.9838	0.5198	0.4323	147.68	0.4554	40.2	1/982	1/7748
SNV	Breast	FIBP_R21C_1	HLA-A02:01	CLWLDGYSV	0.9854	0.7271	0.1304	406.55	0.6298	40.2	1/982	1/7748
SNV	Breast	FIBP_R21C_9	HLA-A02:01	TLIDEDVYCL	0.9961	0.522	0.6195	5.66	0.1132	40.2	1/982	1/7748
SNV	Breast	FIBP_R21C_2	HLA-A02:01	YCLWLDGYSV	0.9045	0.7193	1.9293	23.79	0.2321	40.2	1/982	1/7748
SNV	Breast	GLIS3_D717H_6	HLA-B15:03	GQASFHVF	0.9546	0.9058	0.9545	16.92	0.2345	2.96	1/982	1/7748
SNV	Breast	GLIS3_D717H_7	HLA-C16:01	MGQASFHVF	0.9542	0.9814	0.3975	101.13	0.4276	2.96	1/982	1/7748
SNV	Breast	LIPH_R381I_8	HLA-B15:03	HQVSLLAIF	0.9271	0.668	0.0079	3.28	0.0591	1.89	1/982	1/7748
SNV	Breast	PWWP2A_R195G_8	HLA-B15:03	VLMDLSKGF	0.7181	0.6918	0.1779	25.63	0.2983	4.85	1/982	1/7748
SNV	Breast	REC8_P507L_9	HLA-C16:01	SSLVSPLSL	0.9329	0.982	0.117	7.49	0.075	12.47	1/982	1/7748
SNV	Breast	SLCO4A1_L466M_3	HLA-B15:03	VSMLGILVF	0.9766	0.6	0.0563	52.68	0.4298	3.82	1/982	1/7748
SNV	Breast	SLCO4A1_L466M_3	HLA-C16:01	VSMLGILVF	0.87	0.9516	0.2784	30.6	0.2169	3.82	1/982	1/7748
SNV	Breast	SOX15_F56L_9	HLA-C16:01	KVKRPMNAL	0.7151	0.9297	1.346	16.64	0.1516	1.63	1/982	1/7748
SNV	Breast	ADTRP_A162G_1	HLA-B58:01	GSIAYISRILW	0.9992	0.8506	0.4096	310.31	0.5657	1.19	1/982	1/7748
SNV	Breast	BROX_E231Q_2	HLA-B58:01	LQPAYSAKW	0.9078	0.9747	0.3857	238.81	0.5203	40.77	1/982	1/7748
SNV	Breast	BROX_E231Q_4	HLA-B58:01	SSLQPAYSAKW	0.9997	0.9412	0.1804	17.55	0.1906	40.77	1/982	1/7748
SNV	Breast	C2CD5_D819G_3	HLA-B58:01	STGNEELLQF	0.9801	0.9271	0.6199	478.75	0.6522	23.14	1/982	1/7748
SNV	Breast	CDC73_E24D_1	HLA-B58:01	DVIFGEFSW	0.8545	0.9876	0.3695	52.41	0.3079	33.93	1/982	1/7748
SNV	Breast	CDC73_E24D_1	HLA-B53:01	DVIFGEFSW	0.9614	0.7435	0.199	7.83	0.0494	33.93	1/982	1/7748
SNV	Breast	IKZF2_R208H_6	HLA-B58:01	RSYKQHSSL	0.9776	0.7968	0.2504	139.36	0.4397	3.45	1/982	1/7748
SNV	Breast	NEDD9_A798D_6	HLA-B58:01	ATKMADLHY	0.9613	0.9229	0.6971	356.78	0.5899	15.9	1/982	1/7748
SNV	Breast	SEMA5B_A411V_8	HLA-A23:01	RYQENPRVAW	0.989	0.8903	0.4195	6.76	0.1694	1.2	1/982	1/7748
SNV	Breast	SEMA5B_A411V_7	HLA-B58:01	YQENPRVAW	0.6544	0.9948	0.8582	360.64	0.5918	1.2	1/982	1/7748
SNV	Breast	SVEP1_Q3051K_8	HLA-B58:01	ITCEADGKW	0.9957	0.8889	0.04	4.25	0.0752	3.71	1/982	1/7748
SNV	Breast	ZNF440_H250N_3	HLA-B58:01	RTNTGEKPY	0.8616	0.9361	1.0964	277.48	0.5463	8.74	1/982	1/7748
SNV	Breast	ALDH3B2_P351L_3	HLA-C16:01	LALSGLEKL	0.8033	0.9928	0.2141	225.97	0.6108	378.57	1/982	1/7748
SNV	Breast	BCL7C_R44H_8	HLA-C15:05	TVGDTSLHI	0.9929	0.8482	0.4229	262.33	0.4128	30.48	1/982	1/7748
SNV	Breast	C1QTNF1_A88T_8	HLA-C15:05	TSMYPATTV	0.9998	0.9726	0.7086	29.82	0.1252	10.87	1/982	1/7748
SNV	Breast	C1QTNF1_A88T_3	HLA-C15:05	ATTVPQINI	0.9912	0.9214	0.7165	333.03	0.4658	10.87	1/982	1/7748
SNV	Breast	C1QTNF1_A88T_1	HLA-C15:05	TVPQINITI	0.9824	0.9346	0.3689	241.36	0.3959	10.87	1/982	1/7748
SNV	Breast	C1QTNF1_A88T_8	HLA-C16:01	TSMYPATTV	0.9611	0.9899	0.7897	27.98	0.203	10.87	1/982	1/7748
SNV	Breast	FAM129B_V445M_8	HLA-B45:01	REQMDNAMYT	0.9223	0.8992	0.3991	352.77	0.3252	157.39	1/982	1/7748
SNV	Breast	FAM129B_V445M_6	HLA-C16:01	QMDNAMYTF	0.8715	0.992	1.0255	367.15	0.7509	157.39	1/982	1/7748
SNV	Breast	FAM129B_V445M_3	HLA-C16:01	NAMYTFETL	0.9634	0.9582	0.4516	38.64	0.2529	157.39	1/982	1/7748
SNV	Breast	FHDC1_R892W_7	HLA-C15:05	AVAKSVWTL	0.9982	0.9634	0.7731	100.83	0.2637	21.17	1/982	1/7748
SNV	Breast	FHDC1_R892W_7	HLA-C16:01	AVAKSVWTL	0.97	0.9744	0.6897	10.66	0.1046	21.17	1/982	1/7748
SNV	Breast	HCFC1_P1541T_1	HLA-B45:01	TELPAAVDL	0.772	0.8963	0.1525	170.9	0.2475	36.69	1/982	1/7748
SNV	Breast	HCFC1_P1541T_10	HLA-B45:01	AEVLSASQTT	0.9325	0.9516	0.1323	201.45	0.2633	36.69	1/982	1/7748
SNV	Breast	HCFC1_P1541T_7	HLA-C15:05	LSASQTTEL	0.9992	0.856	0.0948	152.92	0.3221	36.69	1/982	1/7748
SNV	Breast	HCFC1_P1541T_7	HLA-C16:01	LSASQTTEL	0.8929	0.9682	0.0609	25.52	0.1931	36.69	1/982	1/7748
SNV	Breast	HEATR1_L420S_4	HLA-C16:01	KVSSLNEQF	0.9046	0.9854	0.2496	495.5	0.8409	5.77	1/982	1/7748
SNV	Breast	HEATR1_L420S_1	HLA-C16:01	SLNEQFLPL	0.963	0.9837	0.7645	384.59	0.764	5.77	1/982	1/7748
SNV	Breast	MRPS12_L33V_3	HLA-C15:05	ATVNQMHRL	0.9985	0.8935	0.4604	115.93	0.2818	76.73	1/982	1/7748
SNV	Breast	MRPS12_L33V_3	HLA-C16:01	ATVNQMHRL	0.8366	0.9833	0.7121	408.37	0.781	76.73	1/982	1/7748
SNV	Breast	NBPF12_E386K_1	HLA-C16:01	KGRDASRSL	0.532	0.976	1.9878	247.7	0.6376	3.24	1/982	1/7748
SNV	Breast	PNISR_I459L_2	HLA-C16:01	FLHKEQNSL	0.7656	0.9733	0.4056	183.26	0.5585	16.49	1/982	1/7748
SNV	Breast	PYGB_R410L_6	HLA-C16:01	YAINQLHL	0.9974	0.9839	0.3205	490.5	0.8377	182.32	1/982	1/7748
SNV	Breast	RECQL4_T465R_3	HLA-B45:01	AERPAEVFQA	0.9963	0.9494	0.1108	19.43	0.0866	30.35	1/982	1/7748
SNV	Breast	RECQL4_T465R_1	HLA-B07:02	RPAEVFQAL	0.9996	0.6575	0.0006	1.09	0.004	30.35	1/982	1/7748
SNV	Breast	RECQL4_T465R_1	HLA-C16:01	RPAEVFQAL	0.7853	0.9882	1.346	30.59	0.2169	30.35	1/982	1/7748
SNV	Breast	RHOBTB2_I109V_3	HLA-C15:05	FSVANPNSL	0.9993	0.9233	0.0214	18.84	0.0882	5.54	1/982	1/7748
SNV	Breast	RHOBTB2_I109V_3	HLA-C16:01	FSVANPNSL	0.9703	0.9816	0.0415	4.81	0.0446	5.54	1/982	1/7748
SNV	Breast	SLC10A5_R307I_4	HLA-C15:05	RIIIPLSFI	0.9751	0.936	1.6467	451.51	0.5349	2	1/982	1/7748
SNV	Breast	SLC10A5_R307I_3	HLA-C15:05	IIIPLSFIL	0.9781	0.9183	0.8452	300.68	0.4431	2	1/982	1/7748
SNV	Breast	SLC10A5_R307I_3	HLA-C16:01	IIIPLSFIL	0.9615	0.9625	1.4669	118.44	0.4601	2	1/982	1/7748
SNV	Breast	TANGO6_V834I_1	HLA-C15:05	ITTEQLQEV	0.9994	0.9497	0.1541	340.27	0.4706	3.9	1/982	1/7748
SNV	Breast	TLK2_R568Q_6	HLA-B45:01	SEKEAQSII	0.9839	0.7353	0.092	49.13	0.1459	29.88	1/982	1/7748
SNV	Breast	WDR20_F52L_9	HLA-C15:05	GSNPVRVSL	0.9998	0.943	0.2529	8.62	0.0466	5.6	1/982	1/7748
SNV	Breast	WDR20_F52L_9	HLA-C16:01	GSNPVRVSL	0.9912	0.9912	0.257	3.63	0.032	5.6	1/982	1/7748
SNV	Breast	ANKRD28_E882K_8	HLA-C15:02	LVSSASAKL	0.9821	0.9259	0.5205	250.16	0.5717	10.26	1/982	1/7748
SNV	Breast	ANKRD28_E882K_6	HLA-C15:02	SSASAKLTL	0.9995	0.8802	0.0861	25.19	0.171	10.26	1/982	1/7748
SNV	Breast	ARSA_H425R_4	HLA-C15:02	LTAREPPLL	0.9992	0.8458	0.3683	184.83	0.5038	30.42	1/982	1/7748
SNV	Breast	BAX_R89Q_1	HLA-B41:01	QEVFFRVAA	0.9273	0.9923	0.1101	28.47	0.14	94.39	1/982	1/7748
SNV	Breast	CAPRIN2_S607F_1	HLA-C15:02	FTLPKDPVL	0.9987	0.9461	0.06	4.6	0.0376	2.04	1/982	1/7748
SNV	Breast	CAPRIN2_S607F_1	HLA-C08:02	FTLPKDPVL	0.8911	0.9733	0.4045	251.06	0.107	2.04	1/982	1/7748
SNV	Breast	CPEB2_P476T_1	HLA-B41:01	TELKYPKGA	0.672	0.8712	0.1958	302.52	0.3538	1.06	1/982	1/7748
SNV	Breast	DMTF1_P476S_6	HLA-C15:02	SSADSSATV	0.9995	0.6759	0.1055	32.96	0.2057	7.16	1/982	1/7748
SNV	Breast	DOCK11_S2067Y_3	HLA-C15:02	YGYPRYAEV	0.9991	0.8857	0.6441	21	0.1508	2.05	3/982	3/7748
SNV	Breast	DOCK11_S2067Y_3	HLA-C15:02	YGYPRYAEV	0.9991	0.8857	0.6441	21	0.1508	2.05	3/982	3/7748
SNV	Breast	DOCK11_S2067Y_3	HLA-C15:02	YGYPRYAEV	0.9991	0.8857	0.6441	21	0.1508	2.05	3/982	3/7748
SNV	Breast	FNDC3B_G472A_4	HLA-C15:02	YTLANIPQM	0.9969	0.88	0.0834	4.27	0.0331	19.39	1/982	1/7748
SNV	Breast	KDM6A_E206K_1	HLA-C15:02	KIQFHIAHL	0.9964	0.8788	0.3428	398.68	0.71	11.82	1/982	1/7748
SNV	Breast	MFN1_T215M_1	HLA-B41:01	MEKHFFHKV	0.8468	0.9237	0.0165	91.77	0.2308	19.33	1/982	1/7748
SNV	Breast	RAPGEFL1_G383V_5	HLA-C15:02	FLHEVSKTL	0.9369	0.945	0.1345	45.85	0.2601	13.5	1/982	1/7748
SNV	Breast	RAPGEFL1_G383V_5	HLA-C08:02	FLHEVSKTL	0.8967	0.9811	0.1558	219.65	0.102	13.5	1/982	1/7748
SNV	Breast	SBNO2_K871N_7	HLA-C15:02	FASIVANRL	0.9988	0.9282	0.1345	37.44	0.2271	25.92	1/982	1/7748
SNV	Breast	SBNO2_K871N_4	HLA-C15:02	IVANRLESL	0.9989	0.8311	0.6541	55.78	0.2898	25.92	1/982	1/7748
SNV	Breast	SLC35C2_S128P_4	HLA-C15:02	LIFPLIFKL	0.9905	0.8541	0.4059	244.56	0.5666	23.7	1/982	1/7748
SNV	Breast	SLC9A8_A394V_6	HLA-C15:02	VLFGRVVNI	0.9576	0.9191	1.0499	77.87	0.3485	8.68	1/982	1/7748
SNV	Breast	SNUPN_L336F_3	HLA-B41:01	YEFEHLSTP	0.6793	0.9214	0.1145	28.27	0.1395	18.15	1/982	1/7748
SNV	Breast	SPPL3_I272M_1	HLA-C15:02	MVMPGLLL	0.9997	0.9328	1.9983	178.28	0.4966	17.14	1/982	1/7748
SNV	Breast	TBC1D9_A978E_2	HLA-B41:01	GEDDGFVTVSL	0.9665	0.9587	0.247	444.23	0.4087	45.04	1/982	1/7748
SNV	Breast	TUBB2A_M403I_6	HLA-C15:02	YTGEGIDEM	0.9586	0.9701	0.2144	248.73	0.5704	32.87	1/982	1/7748
SNV	Breast	TUBB2A_M403I_6	HLA-C08:02	YTGEGIDEM	0.9936	0.9545	0.2079	472.57	0.137	32.87	1/982	1/7748
SNV	Breast	UHRF1BP1_S273I_1	HLA-C15:02	ILAPEPVQI	0.9945	0.9093	0.3809	29.37	0.1898	9.22	1/982	1/7748
SNV	Breast	UHRF1BP1_S273I_1	HLA-C08:02	ILAPEPVQI	0.9465	0.994	0.3395	402.52	0.1247	9.22	1/982	1/7748
SNV	Breast	XPO4_L6M_9	HLA-C15:02	AAAMGPPEV	0.9992	0.9739	0.1477	28.82	0.1874	5.24	1/982	1/7748
SNV	Breast	XPO4_L6M_8	HLA-C15:02	AAMGPPEVI	0.9983	0.9774	0.1029	21.12	0.1514	5.24	1/982	1/7748
SNV	Breast	ZEB1_Y843H_3	HLA-C15:02	VAHTYSTTV	0.9992	0.8626	0.0165	36.94	0.2249	1.74	1/982	1/7748
SNV	Breast	CLU_V20F_8	HLA-C02:10	LTWESGQFL	0.5347	0.955	0.2336	353.57	0.3786	1540.44	1/982	1/7748
SNV	Breast	CLU_V20F_8	HLA-C16:01	LTWESGQFL	0.8744	0.9814	0.307	273.83	0.6668	1540.44	1/982	1/7748
SNV	Breast	SEMA4A_P581R_1	HLA-B15:03	RHLSALASYY	0.7926	0.5132	1.9535	371.51	0.87	14.12	1/982	1/7748
SNV	Breast	ANKRD52_L707M_8	HLA-C08:02	HVDCVHLML	0.9997	0.9868	0.0494	133.16	0.0741	22.18	1/982	1/7748
SNV	Breast	DNAJC21_P59L_5	HLA-A02:01	VLSDLQERA	0.9961	0.6692	0.6371	265.44	0.5528	23.3	1/982	1/7748
SNV	Breast	TMCO6_P423S_7	HLA-C07:01	QRLWPGSLL	0.9987	0.7627	0.0907	45.61	0.0621	9.1	1/982	1/7748
SNV	Breast	CLDN1_Y33H_1	HLA-C03:04	HSYAGDNIV	0.8855	0.9803	1.053	387.63	0.4614	18.23	1/982	1/7748
SNV	Breast	MARK2_R302Q_5	HLA-A02:01	IMKDQWMNV	0.9953	0.6844	0.4466	274.98	0.5585	47.35	1/982	1/7748
SNV	Breast	SOCS4_M415I_8	HLA-A02:01	ALPIPSSIKL	0.8183	0.5827	1.6957	188.75	0.4974	13.28	1/982	1/7748
SNV	Breast	SOCS4_M415I_7	HLA-B39:01	LPIPSSIKL	0.7068	0.8643	0.5196	455.18	0.2996	13.28	1/982	1/7748
SNV	Breast	SOCS4_M415I_2	HLA-B15:01	SIKLYLKEY	0.9977	0.8872	0.4557	375.77	0.4698	13.28	1/982	1/7748
SNV	Breast	SOCS4_M415I_7	HLA-C03:04	LPIPSSIKL	0.9761	0.983	0.6581	67.44	0.2333	13.28	1/982	1/7748
SNV	Breast	TTLL11_Q719H_4	HLA-A02:01	FLAHRKFKM	0.949	0.7202	0.1706	340.01	0.5929	5.08	1/982	1/7748
SNV	Breast	WHSC1L1_M642I_9	HLA-B39:01	SRASTDVEI	0.9973	0.6608	0.1541	26.08	0.0913	150.44	1/982	1/7748
SNV	Breast	BIRC6_C4770F_9	HLA-C07:01	KRVEIMAQF	0.9992	0.6683	0.0096	44.07	0.0609	17.27	1/982	1/7748
SNV	Breast	CEP170_E600Q_3	HLA-B08:01	DQQERIMEF	0.861	0.8457	0.47	170.14	0.2189	8.71	1/982	1/7748
SNV	Breast	FLNC_E873K_5	HLA-B08:01	KVKAKGPGL	0.9491	0.7071	0.1523	318.29	0.2786	9.73	1/982	1/7748
SNV	Breast	GPC6_R372T_1	HLA-B07:02	TPTTAAGTSL	0.9972	0.5501	0.0669	6.2	0.0813	12.1	1/982	1/7748
SNV	Breast	MVB12A_I31M_10	HLA-B07:02	APPPRGFSAM	0.9996	0.5873	0.0704	5.26	0.0754	33.72	1/982	1/7748
SNV	Breast	NLRP1_Q243E_4	HLA-B08:01	TPPEAHTSL	0.5463	0.8346	0.3434	493.19	0.3318	15.29	1/982	1/7748
SNV	Breast	WIZ_S719Y_1	HLA-B07:02	YLVPRPPQTSL	0.9907	0.6022	1.6699	1.29	0.0127	59.05	1/982	1/7748
SNV	Breast	CNKSR1_T435M_7	HLA-B35:01	FVLKGHMLY	0.9668	0.8785	0.0469	15	0.1587	26.57	1/982	1/7748
SNV	Breast	CNKSR1_T435M_10	HLA-B27:05	RRWFVLKGHM	0.9998	0.6494	0.0346	53.42	0.3404	26.57	1/982	1/7748
SNV	Breast	CNKSR1_T435M_10	HLA-B27:05	RRWFVLKGHML	0.9999	0.5729	0.0537	61.5	0.3554	26.57	1/982	1/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:05	ARHGGWTTK	0.9983	0.8261	0.1474	11.97	0.2093	4.21	11/982	17/7748
SNV	Breast	PIK3CA_H1047R_2	HLA-B27:05	ARHGGWTTKM	0.9998	0.666	0.0388	24.5	0.2651	4.21	11/982	17/7748
SNV	Breast	SPDL1_G474R_3	HLA-A02:01	ALRGEVYRL	0.9289	0.6402	0.7085	80.5	0.3636	4.08	1/982	1/7748
SNV	Breast	FRRS1_D50N_7	HLA-B15:01	QSVPVHNIY	0.9895	0.7927	0.3408	30.56	0.172	7.98	1/982	1/7748
SNV	Breast	FRRS1_D50N_1	HLA-B15:01	NIYVSQMTF	0.9857	0.7753	0.1024	460.1	0.5046	7.98	1/982	1/7748
SNV	Breast	GPR39_E416K_8	HLA-A02:01	FLSTFQSKA	0.9945	0.531	0.0571	248.09	0.5418	1.92	1/982	1/7748
SNV	Breast	HMCN1_S836L_9	HLA-A02:01	RLDNMPIFL	0.9958	0.5153	0.3941	1.71	0.0359	2.25	1/982	1/7748
SNV	Breast	HMCN1_S836L_10	HLA-C07:02	RRLDNMPIFL	0.9818	0.8703	0.0969	152.9	0.2393	2.25	1/982	1/7748
SNV	Breast	IPPK_E379K_3	HLA-B15:01	STKDDGTVAF	0.9997	0.6478	0.5288	25.08	0.1577	7.88	1/982	1/7748
SNV	Breast	RPA2_F64Y_7	HLA-A02:01	TLVDEVYRI	0.9966	0.573	0.1395	1.44	0.0186	120.98	1/982	1/7748
SNV	Breast	SEC31A_P555S_3	HLA-B15:01	FLSSSGGTF	0.9934	0.8964	0.0035	7.42	0.0703	67.25	1/982	1/7748
SNV	Breast	STAG2_L1000F_3	HLA-C07:02	AFFDILSEF	0.8591	0.9672	0.0168	6.89	0.0326	33.56	1/982	2/7748
SNV	Breast	TSPAN15_D212Y_7	HLA-C07:02	ERFSVQYVI	0.8988	0.764	0.5784	487	0.3935	285.12	1/982	1/7748
SNV	Breast	ZNF347_S46F_6	HLA-C07:02	YRNLAFLGI	0.9402	0.92	0.3064	33.64	0.1048	4.24	1/982	1/7748
