Type	Tissue	Mutation	HLA	Peptide	Deep_bind	Deep_imm	MHCf_rank (%)	Net4_aff (nM)	Net4_rank (%)	TPM	Frequency in the tissue	Frequency in all samples
INDEL	Thyroid	ARID2_D230Sfs*59	HLA-C16:01	LSFGKTSL	0.9972	0.988	0.3529	299	0.9392	6.23	1/248	1/7086
INDEL	Thyroid	ARID2_D230Sfs*59	HLA-C16:01	LSFGKTSLM	0.9799	0.9864	0.3822	24	0.0581	6.23	1/248	1/7086
INDEL	Thyroid	ARID2_D230Sfs*59	HLA-C16:01	FGKTSLMIM	0.6765	0.9853	0.651	196.2	0.6511	6.23	1/248	1/7086
INDEL	Thyroid	ARID2_D230Sfs*59	HLA-C16:01	KTSLMIMKF	0.7006	0.968	0.0762	356.2	1.0643	6.23	1/248	1/7086
INDEL	Thyroid	ARID2_D230Sfs*59	HLA-C16:01	MIMKFVTSF	0.9917	0.9864	0.1227	36.2	0.1048	6.23	1/248	1/7086
INDEL	Thyroid	ARID2_D230Sfs*59	HLA-C16:01	TSFLTETSL	0.7022	0.992	0.3941	68.5	0.2376	6.23	1/248	1/7086
INDEL	Thyroid	ARID2_D230Sfs*59	HLA-C16:01	FGSLYFIHL	0.9291	0.9714	0.2543	371.7	1.0944	6.23	1/248	1/7086
INDEL	Thyroid	ARID2_D230Sfs*59	HLA-C16:01	FIHLESWAL	0.8661	0.9735	0.4475	120.7	0.4109	6.23	1/248	1/7086
INDEL	Thyroid	USP9X_Y630Mfs*13	HLA-C07:02	TYMESMRLM	0.6609	0.8858	0.0344	48	0.0196	9.51	1/248	1/7086
INDEL	Thyroid	USP9X_Y630Mfs*13	HLA-C05:01	YMESMRLML	0.9998	0.9178	0.6818	256.9	0.1148	9.51	1/248	1/7086
INDEL	Thyroid	RECK_H865Qfs*22	HLA-B08:01	KIRMQCTCL	0.6569	0.8944	1.182	172.9	0.3049	2.9	1/248	1/7086
INDEL	Thyroid	LRP1B_D1396Efs*13	HLA-C03:04	YGILFWTEM	0.9931	0.9888	0.6352	70.4	0.2826	2.44	1/248	1/7086
INDEL	Thyroid	ABCC9_L306Ffs*17	HLA-B57:01	SSTFRYFW	0.9996	0.7807	0.1302	102.7	0.2356	4.91	1/248	1/7086
INDEL	Thyroid	ABCC9_L306Ffs*17	HLA-A02:01	LLDLFVFL	0.9949	0.5135	1.9682	189.9	1.5922	4.91	1/248	1/7086
INDEL	Thyroid	ABCC9_L306Ffs*17	HLA-B57:01	LSSTFRYFW	0.9997	0.8314	0.037	5.2	0.0076	4.91	1/248	1/7086
INDEL	Thyroid	ABCC9_L306Ffs*17	HLA-B57:01	STFRYFWLI	0.9843	0.8013	0.3787	414.4	0.6502	4.91	1/248	1/7086
INDEL	Thyroid	ABCC9_L306Ffs*17	HLA-A02:01	VLLDLFVFL	0.9942	0.5713	0.0643	6.2	0.053	4.91	1/248	1/7086
INDEL	Thyroid	ABCC9_L306Ffs*17	HLA-B57:01	LLSSTFRYFW	0.9993	0.8745	0.6973	13.5	0.0189	4.91	1/248	1/7086
INDEL	Thyroid	ABCC9_L306Ffs*17	HLA-B57:01	ILLSSTFRYFW	0.9984	0.8295	0.834	47.2	0.1299	4.91	1/248	1/7086
INDEL	Thyroid	ABCC9_L306Ffs*17	HLA-B57:01	STFRYFWLIYW	0.9994	0.8716	0.2913	232.3	0.424	4.91	1/248	1/7086
INDEL	Thyroid	ABCC9_Y305delinsLVNFSPLN	HLA-A02:01	LLSSTFRLV	0.9939	0.5922	0.1055	70.9	0.8348	4.91	1/248	1/7086
INDEL	Thyroid	ABCC9_Y305delinsLVNFSPLN	HLA-C03:04	LVNFSPLNL	0.9985	0.987	0.5435	135.4	0.4399	4.91	1/248	1/7086
INDEL	Thyroid	ABCC9_Y305delinsLVNFSPLN	HLA-C03:04	FSPLNLADL	0.9909	0.9867	0.5328	299.6	0.7225	4.91	1/248	1/7086
INDEL	Thyroid	ABCC9_Y305delinsLVNFSPLN	HLA-A02:01	NLADLLGFA	0.9923	0.5163	0.3152	38.5	0.5013	4.91	1/248	1/7086
INDEL	Thyroid	ABCC9_Y305delinsLVNFSPLN	HLA-A02:01	ILLSSTFRLV	0.9953	0.5159	0.3367	10.6	0.1248	4.91	1/248	1/7086
INDEL	Thyroid	ABCC9_Y305delinsLVNFSPLN	HLA-B57:01	LSSTFRLVNF	0.9998	0.8619	0.5165	154.6	0.3155	4.91	1/248	1/7086
INDEL	Thyroid	ABCC9_Y305delinsLVNFSPLN	HLA-A02:01	RLVNFSPLNL	0.9891	0.5503	0.1196	70.5	0.8318	4.91	1/248	1/7086
INDEL	Thyroid	TENM1_T2591Kfs*30	HLA-B57:01	LVLIGNKERSW	1	0.9687	0.4078	478.2	0.7235	56.44	1/248	1/7086
INDEL	Thyroid	TENM1_T2591Kfs*30	HLA-B57:01	RSWGEADSGEW	1	0.9826	0.1734	31.3	0.0792	56.44	1/248	1/7086
INDEL	Thyroid	RBM6_K36Rfs*33	HLA-C03:04	YPPPPLRVM	0.9828	0.9921	0.2122	303	0.7274	58.64	1/248	1/7086
INDEL	Thyroid	RBM6_K36Rfs*33	HLA-A32:01	RVMLKRDTL	0.9654	0.9056	0.0848	185.3	0.3292	58.64	1/248	1/7086
INDEL	Thyroid	RBM6_K36Rfs*33	HLA-A32:01	ATFLAEIHF	0.9746	0.9386	0.1734	186.7	0.3315	58.64	1/248	1/7086
INDEL	Thyroid	RBM6_K36Rfs*33	HLA-A32:01	FLAEIHFPL	0.8265	0.9799	0.8607	91.3	0.1633	58.64	1/248	1/7086
INDEL	Thyroid	RBM6_K36Rfs*33	HLA-C03:04	FLAEIHFPL	0.9963	0.9933	0.3028	13.6	0.0516	58.64	1/248	1/7086
INDEL	Thyroid	RBM6_K36Rfs*33	HLA-C08:02	FLAEIHFPL	0.9903	0.9892	1.1679	232.9	0.0251	58.64	1/248	1/7086
INDEL	Thyroid	BRAF_I582_A598dup	HLA-A32:01	KIGDFGLAI	0.9176	0.9757	0.4865	81	0.15	16.51	1/248	1/7086
INDEL	Thyroid	BRAF_I582_A598dup	HLA-C03:04	LAIFLHEDL	0.9993	0.9919	0.1915	140.5	0.4503	16.51	1/248	1/7086
INDEL	Thyroid	BRAF_I582_A598dup	HLA-A32:01	KIGDFGLAIF	0.9919	0.977	0.3107	487	0.7437	16.51	1/248	1/7086
INDEL	Thyroid	TG_E663Lfs*59	HLA-C03:04	KASWAASLL	0.993	0.9957	0.5491	34.8	0.159	14882.5	1/248	1/7086
INDEL	Thyroid	TG_E663Lfs*59	HLA-C03:04	LLAPPCLSL	0.996	0.9888	0.262	122	0.4107	14882.5	1/248	1/7086
INDEL	Thyroid	TG_E663Lfs*59	HLA-C03:04	LAPPCLSLL	0.9967	0.9895	0.4061	210.3	0.5816	14882.5	1/248	1/7086
INDEL	Thyroid	TG_E663Lfs*59	HLA-C03:04	SASTQSATV	0.9819	0.9818	0.7494	141.7	0.4528	14882.5	1/248	1/7086
INDEL	Thyroid	TG_E663Lfs*59	HLA-C03:04	ASTQSATVL	0.9977	0.9791	0.5868	89.2	0.3369	14882.5	1/248	1/7086
INDEL	Thyroid	TG_E663Lfs*59	HLA-A31:01	QSATVLMLR	0.9615	0.5844	0.1821	31.7	0.2497	14882.5	1/248	1/7086
INDEL	Thyroid	TG_E663Lfs*59	HLA-A31:01	ATVLMLRVR	0.9619	0.84	0.4113	85.8	0.6722	14882.5	1/248	1/7086
INDEL	Thyroid	TG_E663Lfs*59	HLA-A32:01	VLMLRVRPF	0.9157	0.9635	1.5029	151.6	0.2711	14882.5	1/248	1/7086
INDEL	Thyroid	TG_E663Lfs*59	HLA-A32:01	LMLRVRPFL	0.8188	0.9661	0.9455	348.4	0.5623	14882.5	1/248	1/7086
INDEL	Thyroid	TG_E663Lfs*59	HLA-A31:01	TQSATVLMLR	0.9672	0.5068	0.4967	112.4	0.8239	14882.5	1/248	1/7086
INDEL	Thyroid	SVIL_S1601Mfs*13	HLA-A32:01	LVFDFGMKF	0.9561	0.975	0.4001	79.7	0.1476	40.42	1/248	1/7086
INDEL	Thyroid	SVIL_S1601Mfs*13	HLA-C03:04	LVFDFGMKF	0.9895	0.9925	0.6635	209.1	0.5795	40.42	1/248	1/7086
INDEL	Thyroid	SVIL_S1601Mfs*13	HLA-C03:04	FGMKFTYGM	0.9965	0.9856	1.9339	34.9	0.1595	40.42	1/248	1/7086
INDEL	Thyroid	NAALADL1_A36Pfs*102	HLA-C07:01	WRPSWGSWM	0.8959	0.6887	1.6929	134.8	0.0533	1.25	1/248	1/7086
INDEL	Thyroid	STT3A_T470Nfs*6	HLA-A32:01	VMAFFLINL	0.7258	0.9007	1.0341	130.3	0.2287	64.72	1/248	1/7086
INDEL	Thyroid	RAB11FIP2_M336Ifs*10	HLA-B35:01	ETWDSSIIY	0.8803	0.7852	0.6875	42.5	0.1645	10.49	1/248	1/7086
INDEL	Thyroid	RAB11FIP2_M336Ifs*10	HLA-C12:03	SIIYFQNQL	0.9579	0.9666	0.9173	369.5	1.2674	10.49	1/248	1/7086
INDEL	Thyroid	LATS1_F88Lfs*44	HLA-A02:01	ILLGVLQKL	0.9934	0.6327	0.0131	20.6	0.2813	12.23	1/248	1/7086
INDEL	Thyroid	LATS1_F88Lfs*44	HLA-A02:01	LLDLMRIWL	0.9699	0.5535	0.5999	152.2	1.3953	12.23	1/248	1/7086
INDEL	Thyroid	LATS1_F88Lfs*44	HLA-A02:01	SLLPLQMKQI	0.8845	0.8458	1.0266	73.7	0.8585	12.23	1/248	1/7086
INDEL	Thyroid	LATS1_F88Lfs*44	HLA-A02:01	KLLDLMRIWL	0.9826	0.6574	0.1915	15.2	0.1874	12.23	1/248	1/7086
INDEL	Thyroid	LATS1_F88Lfs*44	HLA-A02:01	KLFRKLTTEV	0.9856	0.6943	0.6408	27.3	0.3704	12.23	1/248	1/7086
INDEL	Thyroid	ZNF337_E456Gfs*52	HLA-C03:04	ITHSGRSLL	0.9872	0.9603	0.5471	199.6	0.5627	1.54	1/248	1/7086
INDEL	Thyroid	ZNF337_E456Gfs*52	HLA-C03:04	CARTVDEAL	0.9943	0.9902	0.7638	448.6	0.9313	1.54	1/248	1/7086
INDEL	Thyroid	ZNF337_E456Gfs*52	HLA-B40:01	GEGFGISPPI	0.9833	0.7013	1.0192	42.9	0.1224	1.54	1/248	1/7086
INDEL	Thyroid	DNM3_F372Mfs*7	HLA-A02:01	RIFHERFPMI	0.9628	0.6308	0.8884	264.7	1.9669	1.18	1/248	1/7086
INDEL	Thyroid	HPGDS_I17Afs*20	HLA-B35:01	EAYFSYIY	0.99	0.8227	1.8454	366.6	0.7216	2.79	1/248	1/7086
INDEL	Thyroid	HPGDS_I17Afs*20	HLA-B35:01	EAYFSYIYY	0.9838	0.765	0.0848	26.9	0.1075	2.79	1/248	1/7086
INDEL	Thyroid	HMCN1_L2859Cfs*29	HLA-B27:05	SREQIVISL	0.9926	0.8925	0.2573	316.7	0.8858	1.03	1/248	1/7086
INDEL	Thyroid	HMCN1_L2859Cfs*29	HLA-B27:05	SREQIVISLK	0.9987	0.8667	0.4902	149.5	0.4888	1.03	1/248	1/7086
INDEL	Thyroid	MPHOSPH10_R671_Q672insVH	HLA-B27:05	KRVHQDISV	0.9997	0.6615	0.4061	382.2	1.0224	8.59	1/248	1/7086
INDEL	Thyroid	MPHOSPH10_R671_Q672insVH	HLA-B27:05	KRVHQDISVHK	0.9999	0.7358	0.4078	488.1	1.2238	8.59	1/248	1/7086
INDEL	Thyroid	LRBA_E402Vfs*55	HLA-B50:01	AESDLFLAV	0.5416	0.9525	0.0109	32.2	0.0155	6.29	1/248	1/7086
INDEL	Thyroid	LRBA_E402Vfs*55	HLA-A02:01	TMGNSLVPL	0.9646	0.5491	0.585	59.8	0.7302	6.29	2/248	2/7086
INDEL	Thyroid	LRBA_E402Vfs*55	HLA-A02:01	TMGNSLVPL	0.9646	0.5491	0.585	59.8	0.7302	6.29	2/248	2/7086
INDEL	Thyroid	LRBA_E402Vfs*55	HLA-B27:05	SRTIHGLQM	0.9997	0.5299	0.3137	158.7	0.5142	6.29	1/248	1/7086
INDEL	Thyroid	LRBA_E402Vfs*55	HLA-B27:05	LRTTLQFLF	0.9999	0.6673	0.4737	23.7	0.0438	6.29	1/248	1/7086
INDEL	Thyroid	LRBA_E402Vfs*55	HLA-B50:01	AESDLFLAVS	0.7324	0.6369	0.3974	272	0.1978	6.29	1/248	1/7086
INDEL	Thyroid	COL4A3BP_D59delinsVKSLY	HLA-A02:01	ALSYYKSEV	0.9438	0.7897	0.3577	160.8	1.4423	6.44	2/248	2/7086
INDEL	Thyroid	COL4A3BP_D59delinsVKSLY	HLA-A02:01	ALSYYKSEV	0.9438	0.7897	0.3577	160.8	1.4423	6.44	2/248	2/7086
INDEL	Thyroid	COL4A3BP_D59delinsVKSLY	HLA-A02:01	SLYETEYGC	0.8913	0.7936	1.1855	226.2	1.777	6.44	2/248	2/7086
INDEL	Thyroid	COL4A3BP_D59delinsVKSLY	HLA-A02:01	SLYETEYGC	0.8913	0.7936	1.1855	226.2	1.777	6.44	2/248	2/7086
INDEL	Thyroid	UTRN_E1022Vfs*18	HLA-B27:05	LRAFVSSAR	0.9983	0.7631	0.7514	179.3	0.5668	14.1	1/248	1/7086
INDEL	Thyroid	ZBTB10_S512_N513insLN	HLA-B27:05	TRNLTNLASL	0.9997	0.8982	1.1394	285.7	0.8205	2.45	1/248	1/7086
INDEL	Thyroid	TBC1D31_N927Kfs*10	HLA-A02:01	KLLREKLYI	0.9662	0.5891	0.5077	99.1	1.052	1.17	2/248	2/7086
INDEL	Thyroid	TBC1D31_N927Kfs*10	HLA-A02:01	KLLREKLYI	0.9662	0.5891	0.5077	99.1	1.052	1.17	2/248	2/7086
INDEL	Thyroid	SLTM_A328Yfs*14	HLA-B27:05	YRQNLETKK	0.9982	0.8965	0.6616	134.5	0.4444	13.8	1/248	1/7086
INDEL	Thyroid	SLTM_A328Yfs*14	HLA-B27:05	YRQNLETKKR	0.9993	0.675	0.7986	464.8	1.1798	13.8	1/248	1/7086
INDEL	Thyroid	SCAF4_P746Lfs*31	HLA-A02:01	FLPPGPPPL	0.9941	0.913	0.1336	7.8	0.0795	10.37	2/248	2/7086
INDEL	Thyroid	SCAF4_P746Lfs*31	HLA-A02:01	FLPPGPPPL	0.9941	0.913	0.1336	7.8	0.0795	10.37	2/248	2/7086
INDEL	Thyroid	SCAF4_P746Lfs*31	HLA-C17:01	FLPPGPPPL	0.6981	0.9914	0.2335	176	0.0445	10.37	1/248	1/7086
INDEL	Thyroid	SCAF4_P746Lfs*31	HLA-C01:02	FLPPGPPPL	0.9648	0.9806	0.167	140.8	0.0082	10.37	1/248	1/7086
INDEL	Thyroid	SCAF4_P746Lfs*31	HLA-A02:01	FLPPGPPPLM	0.9889	0.8553	0.1994	122.9	1.2079	10.37	2/248	2/7086
INDEL	Thyroid	SCAF4_P746Lfs*31	HLA-A02:01	FLPPGPPPLM	0.9889	0.8553	0.1994	122.9	1.2079	10.37	2/248	2/7086
INDEL	Thyroid	TRAPPC10_I775Lfs*43	HLA-C17:01	FVLPHIYPL	0.8296	0.7784	0.1227	196.4	0.0516	3.3	1/248	1/7086
INDEL	Thyroid	TRAPPC10_I775Lfs*43	HLA-A02:01	LIAFWQAFL	0.8835	0.5911	0.9103	60.4	0.7361	3.3	2/248	2/7086
INDEL	Thyroid	TRAPPC10_I775Lfs*43	HLA-A02:01	LIAFWQAFL	0.8835	0.5911	0.9103	60.4	0.7361	3.3	2/248	2/7086
INDEL	Thyroid	TRAPPC10_I775Lfs*43	HLA-B27:05	HRSPSCTWSR	0.9992	0.6067	0.9663	98.4	0.328	3.3	1/248	1/7086
INDEL	Thyroid	TRAPPC10_I775Lfs*43	HLA-B27:05	SRWLIAFWQA	0.9989	0.8192	1.6127	74	0.2459	3.3	1/248	1/7086
INDEL	Thyroid	TRAPPC10_I775Lfs*43	HLA-A02:01	WLIAFWQAFL	0.9856	0.557	0.6594	30.2	0.4048	3.3	2/248	2/7086
INDEL	Thyroid	TRAPPC10_I775Lfs*43	HLA-A02:01	WLIAFWQAFL	0.9856	0.557	0.6594	30.2	0.4048	3.3	2/248	2/7086
INDEL	Thyroid	TRAPPC10_I775Lfs*43	HLA-A02:01	FLRESSSLSL	0.9537	0.5708	0.6674	179.4	1.5386	3.3	2/248	2/7086
INDEL	Thyroid	TRAPPC10_I775Lfs*43	HLA-A02:01	FLRESSSLSL	0.9537	0.5708	0.6674	179.4	1.5386	3.3	2/248	2/7086
INDEL	Thyroid	TRAPPC10_I775Lfs*43	HLA-B50:01	RESSSLSLPA	0.9421	0.5951	0.4196	63.7	0.0437	3.3	1/248	1/7086
INDEL	Thyroid	TRAPPC10_I775Lfs*43	HLA-B27:05	SRWLIAFWQAF	1	0.7884	0.7554	56.6	0.1854	3.3	1/248	1/7086
INDEL	Thyroid	RAPGEF6_I133Kfs*55	HLA-B08:01	MMWRLTAI	0.9993	0.9716	1.7092	16.4	0.0197	1.59	1/248	1/7086
INDEL	Thyroid	RAPGEF6_I133Kfs*55	HLA-B08:01	LMMWRLTAI	0.9966	0.9833	0.5347	5.2	0.0067	1.59	1/248	1/7086
INDEL	Thyroid	RAPGEF6_I133Kfs*55	HLA-B08:01	LPRCISQKTL	0.8534	0.613	0.6616	488.6	0.7528	1.59	1/248	1/7086
INDEL	Thyroid	UTRN_N2522delinsISISLY	HLA-B08:01	MVKALGISI	0.9786	0.5665	0.6737	475.6	0.7364	24.63	1/248	1/7086
INDEL	Thyroid	MGA_K2262Tfs*78	HLA-B41:02	GEAVLTSL	0.8739	0.6223	0.281	47.9	0.1531	3.8	1/248	1/7086
INDEL	Thyroid	MGA_K2262Tfs*78	HLA-B08:01	MIMRKLMI	0.9993	0.6147	1.1651	21.1	0.0356	3.8	1/248	1/7086
INDEL	Thyroid	MGA_K2262Tfs*78	HLA-C07:01	RRAATHFLV	0.9896	0.6433	0.3137	162.6	0.0631	3.8	1/248	1/7086
INDEL	Thyroid	MGA_K2262Tfs*78	HLA-B08:01	MMKMIMRKL	0.9847	0.7443	0.7304	31.7	0.0528	3.8	1/248	1/7086
INDEL	Thyroid	MGA_K2262Tfs*78	HLA-B08:01	MIMRKLMIL	0.9971	0.6963	0.4078	4.3	0.006	3.8	1/248	1/7086
INDEL	Thyroid	MGA_K2262Tfs*78	HLA-C07:01	MRKLMILLM	0.9901	0.6026	0.5245	102.2	0.039	3.8	1/248	1/7086
INDEL	Thyroid	MGA_K2262Tfs*78	HLA-B08:01	ILLMKLWML	0.9564	0.9453	1.0978	103.8	0.1853	3.8	1/248	1/7086
INDEL	Thyroid	MGA_K2262Tfs*78	HLA-B08:01	FLTTRVRRL	0.9912	0.512	0.5999	54	0.0967	3.8	1/248	1/7086
INDEL	Thyroid	MGA_K2262Tfs*78	HLA-B41:02	AEGMDIFRVT	0.516	0.6262	0.4382	126.3	0.461	3.8	1/248	1/7086
INDEL	Thyroid	DOCK11_A1149_F1150insVL	HLA-B08:01	NLLIKHAV	0.9989	0.5976	0.5982	64.1	0.1133	12.48	1/248	1/7086
INDEL	Thyroid	DOCK11_A1149_F1150insVL	HLA-B08:01	LLIKHAVL	0.9997	0.5729	0.3837	43.5	0.0731	12.48	1/248	1/7086
INDEL	Thyroid	DOCK11_A1149_F1150insVL	HLA-B08:01	NLLIKHAVL	0.9983	0.7147	0.3137	15.5	0.0172	12.48	1/248	1/7086
INDEL	Thyroid	ARRDC3_E261Rfs*21	HLA-B57:01	SSGKTRDVEW	0.9993	0.9761	0.5454	120	0.2616	99.92	1/248	1/7086
INDEL	Thyroid	ARRDC3_E261Rfs*21	HLA-B57:01	LSSGKTRDVEW	1	0.9719	0.3413	268.5	0.4699	99.92	1/248	1/7086
INDEL	Thyroid	GATAD2A_S232Rfs*83	HLA-C16:01	RASSASPMF	0.737	0.9585	0.5195	39.2	0.1173	41.58	1/248	1/7086
INDEL	Thyroid	CLCA2_S686Ifs*37	HLA-B35:05	FAANGRYIIM	0.984	0.6816	1.3843	213.3	0.4868	1.42	1/248	1/7086
INDEL	Thyroid	SCARB2_F273Lfs*10	HLA-B35:05	FPSDLQVSV	0.9867	0.5275	0.0452	32.9	0.084	159.34	1/248	1/7086
INDEL	Thyroid	DOCK7_N1926Ifs*27	HLA-B15:02	TSSSIHVLY	0.9979	0.8103	0.0255	433.2	0.64	10.67	1/248	1/7086
INDEL	Thyroid	DOCK7_N1926Ifs*27	HLA-C08:01	SSIHVLYTL	0.9857	0.982	0.1272	484.1	0.1705	10.67	1/248	1/7086
INDEL	Thyroid	DOCK7_N1926Ifs*27	HLA-B15:02	SIHVLYTLY	0.9886	0.8303	0.2197	481.3	0.6999	10.67	1/248	1/7086
INDEL	Thyroid	ITGA6_D745Vfs*9	HLA-B15:02	LIATFPVHF	0.9983	0.9095	0.3217	209.3	0.3517	77.32	1/248	1/7086
INDEL	Thyroid	ITGA6_D745Vfs*9	HLA-C07:02	TFPVHFNLF	0.7759	0.983	0.0495	349.1	0.2313	77.32	1/248	1/7086
INDEL	Thyroid	MTX1_Q33Pfs*84	HLA-A30:01	RQRCPATWA	0.972	0.9404	1.6471	28.9	0.1386	10.68	1/248	1/7086
INDEL	Thyroid	MTX1_Q33Pfs*84	HLA-A30:01	GGRPPPRPA	0.8985	0.9102	1.9339	170.2	0.8196	10.68	1/248	1/7086
INDEL	Thyroid	DOK6_R25Dfs*18	HLA-A11:01	GIFDDAGWFSR	0.9984	0.5439	0.2165	462.2	1.6772	2.39	1/248	1/7086
INDEL	Thyroid	TG_G923Cfs*6	HLA-A02:05	KLPTCPCTAV	0.9415	0.7554	0.3577	261.3	1.5024	4899.54	1/248	1/7086
INDEL	Thyroid	CDV3_L198Afs*13	HLA-B35:01	FPSAVNCQA	0.9487	0.8967	0.6891	52	0.2015	13.42	1/248	1/7086
INDEL	Thyroid	ATN1_L352Wfs*20	HLA-A02:01	LLHPTLCLL	0.9581	0.5531	0.2745	55.6	0.6866	144.46	1/248	1/7086
INDEL	Thyroid	ATN1_L352Wfs*20	HLA-C03:03	LLHPTLCLL	0.8564	0.9788	1.0292	397.4	0.8563	144.46	1/248	1/7086
INDEL	Thyroid	ATN1_L352Wfs*20	HLA-A02:01	TLCLLLPLL	0.9317	0.725	0.4263	99.4	1.0545	144.46	1/248	1/7086
INDEL	Thyroid	ATN1_L352Wfs*20	HLA-A02:01	LLHPTLCLLL	0.9549	0.5441	1.205	96.8	1.0373	144.46	1/248	1/7086
INDEL	Thyroid	ATN1_L352Wfs*20	HLA-A02:01	TLCLLLPLLL	0.9219	0.678	1.3381	118.1	1.1775	144.46	1/248	1/7086
INDEL	Thyroid	SBF1_E749_E750del	HLA-C03:03	KSTVFSQAI	0.9658	0.9769	1.2725	486.4	0.9934	64.35	1/248	1/7086
INDEL	Thyroid	ZNF598_Y53_A54del	HLA-C12:02	YFADGKVLY	0.8707	0.9609	0.0745	375.6	0.529	17.25	1/248	1/7086
INDEL	Thyroid	HIST2H2AC_I63Sfs*32	HLA-C12:03	TTRRRASSL	0.8933	0.9799	1.3	231.9	0.9166	1.32	1/248	1/7086
INDEL	Thyroid	SPTBN2_T64_S69dup	HLA-C12:03	STKWVNSHL	0.9897	0.9731	0.4825	315.8	1.1292	11.48	1/248	1/7086
INDEL	Thyroid	RBBP6_K1004Tfs*33	HLA-C12:03	VIKPNGRMM	0.9746	0.9693	0.3787	371.4	1.2722	17.39	1/248	1/7086
INDEL	Thyroid	METTL2A_E44Gfs*71	HLA-C03:04	RSMPTNTGM	0.9736	0.9798	0.267	16.7	0.0687	11.72	1/248	1/7086
INDEL	Thyroid	METTL2A_E44Gfs*71	HLA-C08:01	RSMPTNTGM	0.7116	0.9822	0.3235	384.3	0.1386	11.72	1/248	1/7086
INDEL	Thyroid	METTL2A_E44Gfs*71	HLA-C03:04	FSRIDIGFL	0.9972	0.9699	0.9455	286.4	0.7029	11.72	1/248	1/7086
INDEL	Thyroid	MX2_K54Rfs*15	HLA-B58:01	LSSPRTSTF	0.9882	0.8573	0.0745	52.3	0.2943	1.76	1/248	1/7086
INDEL	Thyroid	MX2_K54Rfs*15	HLA-C12:03	LSSPRTSTF	0.9868	0.9801	0.0762	15.3	0.0488	1.76	1/248	1/7086
INDEL	Thyroid	WDFY3_L1526Tfs*7	HLA-A02:01	SLFEHFIET	0.9933	0.8308	0.0052	6.5	0.0577	11.36	2/248	2/7086
INDEL	Thyroid	WDFY3_L1526Tfs*7	HLA-A02:01	SLFEHFIET	0.9933	0.8308	0.0052	6.5	0.0577	11.36	2/248	2/7086
INDEL	Thyroid	WDFY3_L1526Tfs*7	HLA-B18:01	FEHFIETAH	0.9946	0.9641	0.1994	159	0.099	11.36	1/248	1/7086
INDEL	Thyroid	WDFY3_L1526Tfs*7	HLA-A02:01	SLFEHFIETA	0.9983	0.8196	0.0052	13.2	0.1597	11.36	2/248	2/7086
INDEL	Thyroid	WDFY3_L1526Tfs*7	HLA-A02:01	SLFEHFIETA	0.9983	0.8196	0.0052	13.2	0.1597	11.36	2/248	2/7086
INDEL	Thyroid	UTP14C_Q15Rfs*14	HLA-C12:02	LSHRRTSGF	0.7184	0.9864	0.7329	454.6	0.6352	25.84	1/248	1/7086
INDEL	Thyroid	UTP14C_Q15Rfs*14	HLA-C03:04	SGFAKKLPL	0.9904	0.9673	0.6911	402.5	0.8633	25.84	1/248	1/7086
INDEL	Thyroid	CNNM4_F394Lfs*7	HLA-C07:01	IRSDAILDL	0.9908	0.5821	0.0697	132.7	0.0525	8.26	1/248	1/7086
INDEL	Thyroid	CNTNAP1_A1354Pfs*125	HLA-B08:01	YPRSWRSPGL	0.9873	0.6705	0.8492	69.8	0.1211	6.79	2/248	2/7086
INDEL	Thyroid	CNTNAP1_A1354Pfs*125	HLA-B08:01	YPRSWRSPGL	0.9873	0.6705	0.8492	69.8	0.1211	6.79	2/248	2/7086
INDEL	Thyroid	NIPBL_L1406delinsQDKENI	HLA-A02:06	ITDTTILQV	0.9867	0.5436	0.0214	148.5	1.4517	12.43	1/248	1/7086
INDEL	Thyroid	UBR4_F786_L787insTGA	HLA-C04:01	VWDRFTGAL	0.9974	0.9867	0.276	478	0.0099	17.12	1/248	1/7086
INDEL	Thyroid	SUCO_D60Rfs*37	HLA-B35:01	MPNHWENQV	0.9361	0.908	0.1498	161.8	0.4305	20.98	1/248	1/7086
INDEL	Thyroid	IGHM_F155Lfs*53	HLA-A31:01	PSSPVRIPR	0.8808	0.7249	0.6467	127.1	0.8971	41.41	1/248	1/7086
INDEL	Thyroid	IGHM_F155Lfs*53	HLA-A31:01	SSPVRIPRR	0.947	0.6032	1.1369	196.5	1.1923	41.41	1/248	1/7086
INDEL	Thyroid	IGHM_F155Lfs*53	HLA-B14:02	RRIRAAWPL	0.9713	0.8715	1.276	417.2	0.0342	41.41	1/248	1/7086
INDEL	Thyroid	IGHM_F155Lfs*53	HLA-B35:01	LAASHRTSF	0.9646	0.9482	0.2499	34.4	0.1356	41.41	1/248	1/7086
INDEL	Thyroid	IGHM_F155Lfs*53	HLA-B35:01	FPTPSLSPG	0.9548	0.7553	1.3768	53.7	0.2065	41.41	1/248	1/7086
INDEL	Thyroid	IGHM_F155Lfs*53	HLA-A31:01	SPSSPVRIPR	0.8717	0.6267	1.1446	29.3	0.2297	41.41	1/248	1/7086
INDEL	Thyroid	IGHM_F155Lfs*53	HLA-A31:01	AAWPLAASHR	0.987	0.7553	0.5144	93.8	0.7192	41.41	1/248	1/7086
INDEL	Thyroid	IGHM_F155Lfs*53	HLA-A31:01	RAAWPLAASHR	0.9939	0.6401	0.3806	54.9	0.4614	41.41	1/248	1/7086
INDEL	Thyroid	IGHM_F155Lfs*53	HLA-B35:01	WPLAASHRTSF	0.9992	0.8785	0.4456	79.4	0.2709	41.41	1/248	1/7086
INDEL	Thyroid	CLDN7_L9Afs*30	HLA-B35:01	HPAVADELL	0.9771	0.8938	0.356	102.4	0.3243	308.18	1/248	1/7086
INDEL	Thyroid	SCPEP1_M143Vfs*42	HLA-B35:01	IPDSSILHF	0.9984	0.856	0.0052	31.5	0.125	91.86	1/248	1/7086
INDEL	Thyroid	SCPEP1_M143Vfs*42	HLA-A31:01	LHFLRVLWR	0.8167	0.937	1.4821	397.7	1.8342	91.86	1/248	1/7086
INDEL	Thyroid	SCPEP1_M143Vfs*42	HLA-A31:01	HFLRVLWRK	0.9446	0.6908	0.7702	39.4	0.323	91.86	1/248	1/7086
INDEL	Thyroid	SCPEP1_M143Vfs*42	HLA-A31:01	KNGSWHWSR	0.9112	0.8006	0.4096	13.4	0.0766	91.86	1/248	1/7086
INDEL	Thyroid	SCPEP1_M143Vfs*42	HLA-A31:01	ILHFLRVLWR	0.9871	0.9508	1.4904	24.5	0.184	91.86	1/248	1/7086
INDEL	Thyroid	SCPEP1_M143Vfs*42	HLA-A31:01	RKNGSWHWSR	0.8429	0.7727	1.8911	45.5	0.3766	91.86	1/248	1/7086
INDEL	Thyroid	GRAMD1C_K262Lfs*5	HLA-C12:03	ESFDGNSSL	0.8536	0.9682	0.3685	85.7	0.3914	12.91	2/248	2/7086
INDEL	Thyroid	GRAMD1C_K262Lfs*5	HLA-C12:03	ESFDGNSSL	0.8536	0.9682	0.3685	85.7	0.3914	12.91	2/248	2/7086
INDEL	Thyroid	N4BP2_I1039Yfs*12	HLA-C12:03	SISDSYQSI	0.9908	0.9071	0.7967	202.4	0.831	4.74	2/248	2/7086
INDEL	Thyroid	N4BP2_I1039Yfs*12	HLA-C12:03	SISDSYQSI	0.9908	0.9071	0.7967	202.4	0.831	4.74	2/248	2/7086
INDEL	Thyroid	BRAF_A598_T599insIIGDFGLA	HLA-C12:03	LAIIGDFGL	0.8183	0.9816	1.3306	462	1.4708	15.98	2/248	2/7086
INDEL	Thyroid	BRAF_A598_T599insIIGDFGLA	HLA-C12:03	LAIIGDFGL	0.8183	0.9816	1.3306	462	1.4708	15.98	2/248	2/7086
INDEL	Thyroid	EZH2_N167Lfs*12	HLA-A24:02	SMMKFLWSW	0.9889	0.6066	0.4397	131.6	0.2602	4.36	1/248	1/7086
INDEL	Thyroid	RBBP6_N1351delinsRITKY	HLA-C12:03	YVSTKPSNI	0.9875	0.9721	0.9203	100.1	0.4497	30.1	2/248	2/7086
INDEL	Thyroid	RBBP6_N1351delinsRITKY	HLA-C12:03	YVSTKPSNI	0.9875	0.9721	0.9203	100.1	0.4497	30.1	2/248	2/7086
INDEL	Thyroid	RPGRIP1L_S770Mfs*21	HLA-C12:03	MVSKHPKLL	0.9544	0.9728	0.4599	149.8	0.6463	2.05	2/248	2/7086
INDEL	Thyroid	RPGRIP1L_S770Mfs*21	HLA-C12:03	MVSKHPKLL	0.9544	0.9728	0.4599	149.8	0.6463	2.05	2/248	2/7086
INDEL	Thyroid	TAF1_F584Cfs*38	HLA-A24:02	NYGSPSFPPTW	0.9992	0.9663	0.538	155.8	0.2969	16.37	1/248	1/7086
INDEL	Thyroid	TAF1_F584Lfs*94	HLA-C12:03	CTFSARSPL	0.9643	0.9736	0.8859	40.9	0.1763	16.37	2/248	2/7086
INDEL	Thyroid	TAF1_F584Lfs*94	HLA-C12:03	CTFSARSPL	0.9643	0.9736	0.8859	40.9	0.1763	16.37	2/248	2/7086
INDEL	Thyroid	TAF1_F584Lfs*94	HLA-C12:03	SARSPLSPTF	0.9956	0.9868	0.4865	304.8	1.1002	16.37	2/248	2/7086
INDEL	Thyroid	TAF1_F584Lfs*94	HLA-C12:03	SARSPLSPTF	0.9956	0.9868	0.4865	304.8	1.1002	16.37	2/248	2/7086
INDEL	Thyroid	PUM1_T1002Kfs*20	HLA-C07:02	FALSKHTSL	0.9844	0.9474	0.0778	221.3	0.1451	56.18	1/248	1/7086
INDEL	Thyroid	PUM1_T1002Kfs*20	HLA-C03:03	FALSKHTSL	0.9999	0.9938	0.0142	3	0.0081	56.18	1/248	1/7086
INDEL	Thyroid	KIAA0319L_S286Ffs*29	HLA-B07:02	LPLPPRPL	0.9992	0.5746	0.4529	35.1	0.1216	31.98	1/248	1/7086
INDEL	Thyroid	KIAA0319L_S286Ffs*29	HLA-C03:03	FSNTQYSVM	0.9996	0.9891	0.3217	11	0.0387	31.98	1/248	1/7086
INDEL	Thyroid	KIAA0319L_S286Ffs*29	HLA-A02:01	TQYSVMLPL	0.8608	0.5148	0.6818	85.6	0.9543	31.98	1/248	1/7086
INDEL	Thyroid	KIAA0319L_S286Ffs*29	HLA-C03:03	MLPLPPRPL	0.9778	0.9931	0.3866	366	0.8116	31.98	1/248	1/7086
INDEL	Thyroid	KIAA0319L_S286Ffs*29	HLA-B07:02	RAPQHHTQL	0.9889	0.5505	0.7267	404.5	0.7376	31.98	1/248	1/7086
INDEL	Thyroid	KIAA0319L_S286Ffs*29	HLA-C07:02	RAPQHHTQL	0.8856	0.9267	0.4033	372.6	0.246	31.98	1/248	1/7086
INDEL	Thyroid	KIAA0319L_S286Ffs*29	HLA-C03:03	RAPQHHTQL	0.9877	0.9512	0.3495	105.4	0.3753	31.98	1/248	1/7086
INDEL	Thyroid	KIAA0319L_S286Ffs*29	HLA-A02:01	VMLPLPPRPL	0.9112	0.8597	0.8859	133.2	1.2727	31.98	1/248	1/7086
INDEL	Thyroid	SLC19A2_F286Yfs*48	HLA-A02:01	VLWNDYPDV	0.9825	0.6841	0.1498	13.2	0.1603	11.88	1/248	1/7086
INDEL	Thyroid	SLC19A2_F286Yfs*48	HLA-C03:03	VLLLSPSSL	0.8653	0.9835	1.5295	342	0.7799	11.88	1/248	1/7086
INDEL	Thyroid	SLC19A2_F286Yfs*48	HLA-A02:01	LLLSPSSLL	0.9683	0.6017	0.4426	92.8	1.0095	11.88	1/248	1/7086
INDEL	Thyroid	SLC19A2_F286Yfs*48	HLA-C03:03	LLLSPSSLL	0.937	0.9869	1.7896	286.6	0.7033	11.88	1/248	1/7086
INDEL	Thyroid	SLC19A2_F286Yfs*48	HLA-A02:01	LLSPSSLLV	0.9961	0.6825	0.1242	13.7	0.167	11.88	1/248	1/7086
INDEL	Thyroid	SLC19A2_F286Yfs*48	HLA-A02:01	LLVCVVGPL	0.972	0.5468	0.4078	104.1	1.0844	11.88	1/248	1/7086
INDEL	Thyroid	SLC19A2_F286Yfs*48	HLA-A02:01	VLWNDYPDVL	0.9842	0.632	0.6314	96.2	1.0333	11.88	1/248	1/7086
INDEL	Thyroid	SLC19A2_F286Yfs*48	HLA-A02:01	LLLSPSSLLV	0.996	0.5262	0.3199	23.5	0.3225	11.88	1/248	1/7086
INDEL	Thyroid	SLC19A2_F286Yfs*48	HLA-A02:01	SLLVCVVGPL	0.96	0.5735	1.0239	98.9	1.0507	11.88	1/248	1/7086
INDEL	Thyroid	SLC19A2_F286Yfs*48	HLA-A02:01	VLWNDYPDVLL	0.9947	0.5987	0.4183	111.8	1.1358	11.88	1/248	1/7086
INDEL	Thyroid	SLC19A2_F286Yfs*48	HLA-A02:01	LLSPSSLLVCV	0.9765	0.6196	0.6018	120.1	1.1901	11.88	1/248	1/7086
INDEL	Thyroid	SLC19A2_F286Pfs*50	HLA-A02:01	PLFPDVLLL	0.8265	0.5443	0.9942	168.5	1.4814	11.88	1/248	1/7086
INDEL	Thyroid	SLC19A2_F286Pfs*50	HLA-C03:03	VLLLSPSSL	0.8653	0.9835	1.5295	342	0.7799	11.88	1/248	1/7086
INDEL	Thyroid	SLC19A2_F286Pfs*50	HLA-A02:01	LLLSPSSLL	0.9683	0.6017	0.4426	92.8	1.0095	11.88	1/248	1/7086
INDEL	Thyroid	SLC19A2_F286Pfs*50	HLA-C03:03	LLLSPSSLL	0.937	0.9869	1.7896	286.6	0.7033	11.88	1/248	1/7086
INDEL	Thyroid	SLC19A2_F286Pfs*50	HLA-A02:01	LLSPSSLLV	0.9961	0.6825	0.1242	13.7	0.167	11.88	1/248	1/7086
INDEL	Thyroid	SLC19A2_F286Pfs*50	HLA-A02:01	LLVCVVGPL	0.972	0.5468	0.4078	104.1	1.0844	11.88	1/248	1/7086
INDEL	Thyroid	SLC19A2_F286Pfs*50	HLA-A02:01	LLLSPSSLLV	0.996	0.5262	0.3199	23.5	0.3225	11.88	1/248	1/7086
INDEL	Thyroid	SLC19A2_F286Pfs*50	HLA-A02:01	SLLVCVVGPL	0.96	0.5735	1.0239	98.9	1.0507	11.88	1/248	1/7086
INDEL	Thyroid	SLC19A2_F286Pfs*50	HLA-A02:01	VLWNDPLFPDV	0.9976	0.7388	0.4825	24.7	0.3392	11.88	1/248	1/7086
INDEL	Thyroid	SLC19A2_F286Pfs*50	HLA-A02:01	LLSPSSLLVCV	0.9765	0.6196	0.6018	120.1	1.1901	11.88	1/248	1/7086
INDEL	Thyroid	CEP350_K1783_I1784insAKVIF	HLA-C03:03	FIRQTTIKL	0.9458	0.9611	0.4232	163	0.492	8.44	1/248	1/7086
INDEL	Thyroid	PPP1R12B_P160Sfs*19	HLA-C03:03	LSLKYGLPL	0.9983	0.9792	0.7286	20.8	0.0888	3.5	1/248	1/7086
INDEL	Thyroid	PPP1R12B_P160Sfs*19	HLA-C07:02	LKYGLPLTL	0.8823	0.9766	0.0214	464	0.3023	3.5	1/248	1/7086
INDEL	Thyroid	KDM5B_P539Qfs*22	HLA-A02:01	NVMKKLAQV	0.9425	0.6986	0.0267	87.1	0.9669	9.28	1/248	1/7086
INDEL	Thyroid	KDM5B_P539Qfs*22	HLA-A02:01	MLWKTQNSL	0.9807	0.5881	0.0631	40.9	0.5302	9.28	1/248	1/7086
INDEL	Thyroid	KDM5B_P539Qfs*22	HLA-C03:03	MLWKTQNSL	0.9728	0.9871	0.6408	192.1	0.549	9.28	1/248	1/7086
INDEL	Thyroid	MAP10_I837delinsTWTLDF	HLA-C03:03	SCYENTWTL	0.9427	0.9955	0.5181	260.2	0.6644	3.06	1/248	1/7086
INDEL	Thyroid	PPP1R21_S218_L219insSFICY	HLA-A02:01	RLEESSFICYL	0.9953	0.5046	0.7749	147.7	1.3664	62.48	1/248	1/7086
INDEL	Thyroid	KDM3A_P942_H943insSHNEYRL	HLA-C07:02	SHNEYRLHY	0.6731	0.6975	0.1098	386.8	0.255	9.75	1/248	1/7086
INDEL	Thyroid	IGKV1-27_R21Efs*8	HLA-A02:01	WLPDTEPDV	0.9271	0.7588	0.6212	139.9	1.3143	899.87	1/248	1/7086
INDEL	Thyroid	DDX18_P503Qfs*22	HLA-A02:01	MTLRNIFIV	0.9497	0.6236	0.3898	35	0.4628	18.87	1/248	1/7086
INDEL	Thyroid	RBMS1_Y271Gfs*13	HLA-C03:03	AAIQNGFGI	0.9919	0.9901	0.9913	68.4	0.2762	11.66	1/248	1/7086
INDEL	Thyroid	RBMS1_Y271Gfs*13	HLA-C03:03	FGILHHTVL	0.9993	0.9957	0.0396	13.7	0.0521	11.66	1/248	1/7086
INDEL	Thyroid	RBMS1_Y271Gfs*13	HLA-A02:01	GILHHTVLL	0.9628	0.7394	0.3302	145.2	1.3499	11.66	1/248	1/7086
INDEL	Thyroid	KLHL41_W203_V204insR	HLA-A02:01	AVFEAVMKWRV	0.9514	0.7736	1.516	95.4	1.0276	1.13	1/248	1/7086
INDEL	Thyroid	MAP2_I1006Nfs*12	HLA-C03:03	LAKDLSNSL	0.9995	0.9798	0.1255	45.9	0.1962	8.54	1/248	1/7086
INDEL	Thyroid	XRCC5_L284Qfs*23	HLA-C07:02	RRYTKRNSL	0.9385	0.8496	0.3318	58.6	0.0281	119.52	1/248	1/7086
INDEL	Thyroid	XRCC5_L284Qfs*23	HLA-C03:03	YTKRNSLLL	0.9714	0.9782	0.8833	171.6	0.5082	119.52	1/248	1/7086
INDEL	Thyroid	XRCC5_L284Qfs*23	HLA-C07:02	RRYTKRNSLL	0.9875	0.8995	0.6117	440.1	0.288	119.52	1/248	1/7086
INDEL	Thyroid	USP40_R248Tfs*13	HLA-A02:01	FLTVSLLTI	0.9831	0.5967	0.1793	20.8	0.2842	15.96	1/248	1/7086
INDEL	Thyroid	USP40_R248Tfs*13	HLA-C03:03	VSLLTINQL	0.997	0.9896	0.5962	332.3	0.7673	15.96	1/248	1/7086
INDEL	Thyroid	CBLB_C435Vfs*14	HLA-C03:03	VAASLTPL	0.9999	0.9875	0.7106	265.8	0.6729	5.51	1/248	1/7086
INDEL	Thyroid	CBLB_C435Vfs*14	HLA-C03:03	VVAASLTPL	0.9989	0.9841	0.5077	12.4	0.0448	5.51	1/248	1/7086
INDEL	Thyroid	CCDC14_T736Yfs*31	HLA-C07:02	NYRCTQFTF	0.5179	0.7846	0.3698	240.2	0.158	5.55	1/248	1/7086
INDEL	Thyroid	CCDC14_T736Yfs*31	HLA-C07:02	YRCTQFTFL	0.8954	0.8273	0.4078	108.7	0.0589	5.55	1/248	1/7086
INDEL	Thyroid	CCDC14_T736Yfs*31	HLA-C03:03	FTFLLLEAL	0.9977	0.987	0.4967	58.1	0.2401	5.55	1/248	1/7086
INDEL	Thyroid	CCDC14_T736Yfs*31	HLA-C07:02	HHFLRDYPL	0.8361	0.9096	0.3925	380.7	0.2509	5.55	1/248	1/7086
INDEL	Thyroid	ANXA3_H294Qfs*27	HLA-C07:02	MAIPYIQQL	0.9876	0.9769	0.0131	168.6	0.1045	14.81	1/248	1/7086
INDEL	Thyroid	ANXA3_H294Qfs*27	HLA-C03:03	MAIPYIQQL	0.9999	0.9885	0.0014	4.2	0.013	14.81	1/248	1/7086
INDEL	Thyroid	ANXA3_H294Qfs*27	HLA-C03:03	YIQQLNRIL	0.9936	0.9776	0.5264	300.9	0.7244	14.81	1/248	1/7086
INDEL	Thyroid	COPS4_K137Ifs*11	HLA-C03:03	ISTDINSTM	0.9995	0.991	0.1112	18.7	0.0796	27.23	1/248	1/7086
INDEL	Thyroid	TIGD2_D111Ifs*18	HLA-A02:01	ITMLWEWKV	0.931	0.8337	0.3806	27.7	0.3754	8.23	1/248	1/7086
INDEL	Thyroid	TIGD2_D111Ifs*18	HLA-A02:01	MLWEWKVIL	0.9922	0.6475	0.0121	5.9	0.0479	8.23	1/248	1/7086
INDEL	Thyroid	TIGD2_D111Ifs*18	HLA-A02:01	MLWEWKVILM	0.9894	0.6301	0.1465	24.6	0.3372	8.23	1/248	1/7086
INDEL	Thyroid	BDH2_S244Rfs*39	HLA-A02:01	VIIDGGWRL	0.979	0.6203	0.0848	45	0.5756	111.85	1/248	1/7086
INDEL	Thyroid	BDH2_S244Rfs*39	HLA-A02:01	VIIDGGWRLV	0.9918	0.6221	0.3941	64.2	0.7751	111.85	1/248	1/7086
INDEL	Thyroid	REV3L_S546Vfs*15	HLA-C07:02	SRTHSVFLF	0.9317	0.9618	0.0315	126.4	0.068	5.21	1/248	1/7086
INDEL	Thyroid	REV3L_S546Vfs*15	HLA-A02:01	RTHSVFLFV	0.9049	0.7004	0.0187	191.2	1.5987	5.21	1/248	1/7086
INDEL	Thyroid	LTV1_Q44delinsHASL	HLA-A02:01	VLLPTHASL	0.9696	0.7013	0.0995	102.6	1.075	22.56	1/248	1/7086
INDEL	Thyroid	LTV1_Q44delinsHASL	HLA-C03:03	VLLPTHASL	0.9864	0.9931	0.193	88.7	0.3356	22.56	1/248	1/7086
INDEL	Thyroid	LTV1_Q44delinsHASL	HLA-B07:02	RVLLPTHASL	0.9634	0.6966	1.6327	439.2	0.7718	22.56	1/248	1/7086
INDEL	Thyroid	EIF3B_F371Pfs*12	HLA-B07:02	RPLLQPPRGSA	0.9997	0.5308	0.5829	50.3	0.1747	37.66	1/248	1/7086
INDEL	Thyroid	SOSTDC1_P3_P4insEM	HLA-C03:03	MPAIHFYLL	0.9859	0.972	1.3454	262.6	0.6682	24.99	1/248	1/7086
INDEL	Thyroid	PHTF2_F256Lfs*15	HLA-A02:01	DLWHAAFLI	0.7704	0.7133	1.566	149.2	1.3763	5.67	1/248	1/7086
INDEL	Thyroid	PHTF2_F256Lfs*15	HLA-C03:03	HAAFLISFI	0.9824	0.972	0.4311	154.5	0.4771	5.67	1/248	1/7086
INDEL	Thyroid	PHTF2_F256Lfs*15	HLA-C07:02	FRDLWHAAFL	0.9856	0.9907	1.6615	140.4	0.0781	5.67	1/248	1/7086
INDEL	Thyroid	ST7_S523Kfs*?	HLA-C03:03	FMDYKTIHI	0.938	0.9895	0.6911	445.5	0.9259	15.22	1/248	1/7086
INDEL	Thyroid	ST7_S523Kfs*?	HLA-C07:02	KFTDVQFYF	0.7927	0.8687	0.0412	338.6	0.2244	15.22	1/248	1/7086
INDEL	Thyroid	BRAF_P490_Q494del	HLA-A02:01	ALQAFKNEV	0.9916	0.5908	0.3657	132.8	1.2703	11.92	1/248	1/7086
INDEL	Thyroid	BRAF_P490_Q494del	HLA-A02:01	KMLNVTALQA	0.9826	0.5228	0.5328	142.1	1.329	11.92	1/248	1/7086
INDEL	Thyroid	PCM1_T1294Wfs*10	HLA-A02:01	SLASKDKWFL	0.9105	0.6187	0.6758	80.6	0.9134	27.92	1/248	1/7086
INDEL	Thyroid	PCM1_H1993Tfs*17	HLA-C03:03	YSIYLVKYV	0.9177	0.9715	0.5365	309.2	0.7362	27.92	1/248	1/7086
INDEL	Thyroid	SH2D4A_L52Ffs*24	HLA-C03:03	AAMERKESF	0.9905	0.9883	0.2102	202.5	0.568	27.89	1/248	1/7086
INDEL	Thyroid	MCM4_G198Kfs*19	HLA-C03:03	KVMSMGRLM	0.8807	0.9855	1.5707	178.7	0.523	5.11	1/248	1/7086
INDEL	Thyroid	MCM4_G198Kfs*19	HLA-C07:02	MSMGRLMLL	0.9923	0.9176	0.276	176.2	0.1109	5.11	1/248	1/7086
INDEL	Thyroid	MCM4_G198Kfs*19	HLA-C03:03	MSMGRLMLL	0.999	0.9816	0.0658	12.1	0.0435	5.11	1/248	1/7086
INDEL	Thyroid	CHD7_P2599_T2600insAE	HLA-A02:01	KLHPAETYTV	0.9975	0.7944	0.0979	53.4	0.6651	4.62	1/248	1/7086
INDEL	Thyroid	STAU2_P409_K410insF	HLA-C03:03	TPFKGILHL	0.9769	0.9902	0.0558	487.3	0.9949	6.94	1/248	1/7086
INDEL	Thyroid	KIAA2026_H1764delinsLKLAD	HLA-C03:03	IINTVPLKL	0.9963	0.9879	0.037	499.4	1.0096	8.63	1/248	1/7086
INDEL	Thyroid	DENND4C_N590Vfs*4	HLA-B07:02	RPITEAPSV	0.9973	0.6658	0.0441	87.5	0.2681	7.68	1/248	1/7086
INDEL	Thyroid	DENND4C_N590Vfs*4	HLA-B07:02	RPITEAPSVF	0.9979	0.5568	0.1977	52.9	0.1812	7.68	1/248	1/7086
INDEL	Thyroid	DENND4C_N590Vfs*4	HLA-A02:01	YLRPITEAPSV	0.9801	0.5514	1.4064	32.1	0.4293	7.68	1/248	1/7086
INDEL	Thyroid	SUV39H2_I218Yfs*52	HLA-C03:03	FASFELAM	1	0.9948	0.6314	145.8	0.4607	2	1/248	1/7086
INDEL	Thyroid	SUV39H2_I218Yfs*52	HLA-C07:02	AYNKNQQYF	0.5467	0.9247	0.0948	303.2	0.1996	2	1/248	1/7086
INDEL	Thyroid	SUV39H2_I218Yfs*52	HLA-A02:01	FQQLKSHLV	0.9269	0.5348	0.2978	178.2	1.532	2	1/248	1/7086
INDEL	Thyroid	SUV39H2_I218Yfs*52	HLA-C03:03	KSHLVLPSM	0.9912	0.9956	0.5058	336.8	0.7732	2	1/248	1/7086
INDEL	Thyroid	SUV39H2_I218Yfs*52	HLA-C03:03	NATQGVSVV	0.9444	0.9781	0.7573	356.3	0.7976	2	1/248	1/7086
INDEL	Thyroid	SUV39H2_I218Yfs*52	HLA-C03:03	ATQGVSVVL	0.9992	0.9913	0.3367	269.5	0.6784	2	1/248	1/7086
INDEL	Thyroid	SUV39H2_I218Yfs*52	HLA-C03:03	VSVVLIVPI	0.9607	0.9906	1.9612	428.2	0.8969	2	1/248	1/7086
INDEL	Thyroid	SUV39H2_I218Yfs*52	HLA-C07:02	RFASFELAM	0.7338	0.9464	0.3386	325.1	0.2153	2	1/248	1/7086
INDEL	Thyroid	SUV39H2_I218Yfs*52	HLA-C07:02	IRFASFELAM	0.995	0.8665	0.9642	335.2	0.2221	2	1/248	1/7086
INDEL	Thyroid	SUV39H2_I218Yfs*52	HLA-A02:01	VLPSMNATQGV	0.8216	0.6089	1.7839	115.1	1.1581	2	1/248	1/7086
INDEL	Thyroid	ANKRD26_K1329_E1330insILNEFISSF	HLA-C03:03	ILNEFISSF	0.986	0.9851	0.0671	283.4	0.6985	2.17	1/248	1/7086
INDEL	Thyroid	ANKRD26_K1329_E1330insILNEFISSF	HLA-C03:03	SSFEQLKKL	0.9991	0.9917	0.4096	446.6	0.9278	2.17	1/248	1/7086
INDEL	Thyroid	ZNF239_I27Nfs*22	HLA-A02:01	LLFPETGTV	0.9893	0.7866	0.0214	24.8	0.3393	2.71	1/248	1/7086
INDEL	Thyroid	ZNF239_I27Nfs*22	HLA-A02:01	LLLFPETGTV	0.9782	0.6636	1.0214	92.3	1.0063	2.71	1/248	1/7086
INDEL	Thyroid	ZNF239_L25Hfs*33	HLA-C03:03	LSTVGRSIF	0.985	0.9874	1.202	486.7	0.9939	2.71	1/248	1/7086
INDEL	Thyroid	USP54_S1439delinsWWA	HLA-C03:03	WASNVRKPL	0.9993	0.992	0.5924	38.6	0.174	23.43	1/248	1/7086
INDEL	Thyroid	IDE_G331Kfs*12	HLA-A02:01	SLSWSSHWA	0.9161	0.7084	0.6408	245.6	1.8772	12.49	1/248	1/7086
INDEL	Thyroid	IDE_G331Kfs*12	HLA-C07:02	YYKSNPKWSL	0.856	0.9252	1.0524	292.3	0.1924	12.49	1/248	1/7086
INDEL	Thyroid	ZNF143_M214delinsKYMGL	HLA-C07:02	KYMGLQIVL	0.6157	0.8951	0.0166	284.6	0.1872	6.27	1/248	1/7086
INDEL	Thyroid	TENM4_E1005Dfs*11	HLA-C07:02	MRHEDGGMRF	0.9989	0.9475	0.2287	361	0.2388	2.34	1/248	1/7086
INDEL	Thyroid	SYTL2_I66Mfs*13	HLA-C07:02	RHRDKMISM	0.7466	0.949	0.4563	210	0.1371	1.85	1/248	1/7086
INDEL	Thyroid	SYTL2_I66Mfs*13	HLA-C03:03	MAQISSEHL	0.9998	0.9824	0.3352	66.6	0.2699	1.85	1/248	1/7086
INDEL	Thyroid	EXPH5_T786Lfs*55	HLA-C07:02	MYIPHLKYL	0.5031	0.888	0.0166	13.3	0.0077	1.37	1/248	1/7086
INDEL	Thyroid	EXPH5_T786Lfs*55	HLA-C07:02	LHYLQINPM	0.8177	0.9794	1.1446	453.1	0.2955	1.37	1/248	1/7086
INDEL	Thyroid	EXPH5_T786Lfs*55	HLA-A02:01	YLQINPMTL	0.974	0.641	0.1625	28.2	0.3808	1.37	1/248	1/7086
INDEL	Thyroid	EXPH5_T786Lfs*55	HLA-C03:03	YLQINPMTL	0.9647	0.9919	0.2227	35.9	0.1633	1.37	1/248	1/7086
INDEL	Thyroid	EXPH5_T786Lfs*55	HLA-A02:01	NLAQQLPFL	0.9668	0.5668	0.0396	19.6	0.2653	1.37	1/248	1/7086
INDEL	Thyroid	EXPH5_T786Lfs*55	HLA-C07:02	FRNTEHHHL	0.9692	0.9419	0.1596	61.9	0.03	1.37	1/248	1/7086
INDEL	Thyroid	EXPH5_T786Lfs*55	HLA-C07:02	HYLQINPMTL	0.7632	0.9844	0.0717	354	0.2344	1.37	1/248	1/7086
INDEL	Thyroid	KMT2A_D2834Gfs*26	HLA-C03:03	LSIFTITTV	0.9772	0.9675	0.3941	71.4	0.286	8.39	1/248	1/7086
INDEL	Thyroid	KMT2A_D2834Gfs*26	HLA-C03:03	SIFTITTVM	0.9935	0.9536	0.4659	63.7	0.2597	8.39	1/248	1/7086
INDEL	Thyroid	KMT2A_D2834Gfs*26	HLA-C03:03	FTITTVMTV	0.9605	0.991	0.2382	24.5	0.1074	8.39	1/248	1/7086
INDEL	Thyroid	KMT2A_D2834Gfs*26	HLA-C03:03	VGISCLQTL	0.9992	0.9787	0.6875	447.4	0.9293	8.39	1/248	1/7086
INDEL	Thyroid	KMT2A_D2834Gfs*26	HLA-A29:02	CLQTLWTLY	0.998	0.5389	0.4916	27.5	0.1346	8.39	1/248	1/7086
INDEL	Thyroid	KMT2A_D2834Gfs*26	HLA-A29:02	SCLQTLWTLY	0.9921	0.5083	1.4904	82.3	0.3573	8.39	1/248	1/7086
INDEL	Thyroid	NECAP1_Y57_I58insSFYLL	HLA-C03:03	TAYSFYLLI	0.9668	0.9875	0.3075	136	0.4412	15.38	1/248	1/7086
INDEL	Thyroid	NECAP1_Y57_I58insSFYLL	HLA-C03:03	YSFYLLIKL	0.9828	0.9794	0.4698	79.3	0.3098	15.38	1/248	1/7086
INDEL	Thyroid	NECAP1_Y57_I58insSFYLL	HLA-A02:01	LLIKLEDKV	0.986	0.6445	0.276	163.5	1.4559	15.38	1/248	1/7086
INDEL	Thyroid	NECAP1_Y57_I58insSFYLL	HLA-A02:01	YLLIKLEDKV	0.9742	0.5287	0.9253	50.9	0.6395	15.38	1/248	1/7086
INDEL	Thyroid	LRRK2_L498Vfs*32	HLA-C03:03	YSAWHARRI	0.9552	0.9903	0.4134	226.3	0.6088	98.79	1/248	1/7086
INDEL	Thyroid	LRRK2_L498Vfs*32	HLA-C07:02	RRIQGGYRI	0.8956	0.9438	0.2636	334.7	0.2218	98.79	1/248	1/7086
INDEL	Thyroid	RAPGEF3_E95Gfs*74	HLA-C03:03	SSETGSTTL	0.9872	0.996	0.4153	350.1	0.79	42.25	1/248	1/7086
INDEL	Thyroid	RAPGEF3_E95Gfs*74	HLA-C03:03	LGSIGSAAL	0.9967	0.9358	0.8087	65.2	0.265	42.25	1/248	1/7086
INDEL	Thyroid	RAPGEF3_E95Gfs*74	HLA-A02:01	WMGSWPWDL	0.874	0.7792	0.4769	11.9	0.1424	42.25	1/248	1/7086
INDEL	Thyroid	SPPL3_V94Rfs*51	HLA-C03:03	YSSSCNDSF	0.9332	0.9876	0.9942	325.4	0.7583	41.88	1/248	1/7086
INDEL	Thyroid	SPPL3_V94Rfs*51	HLA-C03:03	FSSPPDVPV	0.9899	0.9668	0.4382	14.9	0.0604	41.88	1/248	1/7086
INDEL	Thyroid	SPPL3_V94Rfs*51	HLA-C03:03	FSSPPDVPVF	0.9998	0.9623	0.3974	226.2	0.6086	41.88	1/248	1/7086
INDEL	Thyroid	PITPNM2_Q279Hfs*63	HLA-B07:02	APSGARPQETV	0.9996	0.62	0.2636	364.2	0.6943	1.68	1/248	1/7086
INDEL	Thyroid	ZNF10_K487Ifs*51	HLA-C03:03	MTSLSTREF	0.9924	0.9902	0.8004	228.2	0.6121	14.04	1/248	1/7086
INDEL	Thyroid	ZNF10_K487Ifs*51	HLA-A02:01	SLSTREFML	0.9564	0.7329	0.2268	101.1	1.0653	14.04	1/248	1/7086
INDEL	Thyroid	ZNF10_K487Ifs*51	HLA-C03:03	VALSSARTL	0.9996	0.9844	0.0539	13.8	0.053	14.04	1/248	1/7086
INDEL	Thyroid	ZNF10_K487Ifs*51	HLA-C03:03	LSSARTLHL	0.9994	0.9832	0.2653	177	0.5195	14.04	1/248	1/7086
INDEL	Thyroid	ZNF10_K487Ifs*51	HLA-A02:01	FMLEKRPINV	0.9978	0.6162	0.1098	7.1	0.0691	14.04	1/248	1/7086
INDEL	Thyroid	ZNF10_K487Ifs*51	HLA-A02:01	FMLEKRPINVI	0.9911	0.5554	1.3176	64.1	0.774	14.04	1/248	1/7086
INDEL	Thyroid	MTMR6_G547Efs*36	HLA-A02:01	HLTSKLPCV	0.9806	0.7337	0.2825	78.2	0.8935	13.53	1/248	1/7086
INDEL	Thyroid	MTMR6_G547Efs*36	HLA-C03:03	LTSKLPCVL	0.995	0.9944	0.7286	144.9	0.459	13.53	1/248	1/7086
INDEL	Thyroid	TBC1D4_H1066delinsPFNY	HLA-C07:02	SRLLHDYPF	0.9511	0.91	0.2841	487.6	0.3203	17.26	1/248	1/7086
INDEL	Thyroid	SALL2_H963_H964insKE	HLA-A02:01	LLAHKEHQV	0.9939	0.6206	0.1317	46.5	0.592	11.57	1/248	1/7086
INDEL	Thyroid	NID2_R775Lfs*14	HLA-A02:01	HMCDTTALTV	0.9946	0.5326	0.3041	172.6	1.5017	8.92	1/248	1/7086
INDEL	Thyroid	ARID4A_G584Afs*47	HLA-C07:02	LRKFMKPVL	0.8284	0.9904	0.9036	437.6	0.2866	8.72	1/248	1/7086
INDEL	Thyroid	ARID4A_G584Afs*47	HLA-A02:01	FMKPVLKAL	0.9658	0.6736	0.1547	156.6	1.4196	8.72	1/248	1/7086
INDEL	Thyroid	ARID4A_G584Afs*47	HLA-C07:02	FMKPVLKAL	0.5671	0.9775	0.276	391	0.2577	8.72	1/248	1/7086
INDEL	Thyroid	ARID4A_G584Afs*47	HLA-C03:03	FMKPVLKAL	0.9963	0.9933	0.1317	165.6	0.4965	8.72	1/248	1/7086
INDEL	Thyroid	ARID4A_G584Afs*47	HLA-C03:03	ITMDGMSGM	0.9923	0.9912	0.7438	20.4	0.0873	8.72	1/248	1/7086
INDEL	Thyroid	GALC_G512_V513insITR	HLA-C07:02	RVFEYFTNI	0.9655	0.9638	0.3041	465.4	0.3034	15.24	1/248	1/7086
INDEL	Thyroid	GALC_G512_V513insITR	HLA-C03:03	RVFEYFTNI	0.9486	0.9918	0.0539	170.9	0.5069	15.24	1/248	1/7086
INDEL	Thyroid	ZNF280D_E277Nfs*5	HLA-A02:01	FLGLAKTNV	0.9711	0.8403	0.3639	46.7	0.594	6.53	1/248	1/7086
INDEL	Thyroid	VPS13C_I1766delinsTQLDYIF	HLA-A02:01	YIFIPQSSV	0.9569	0.5897	0.0717	100.5	1.0611	8.57	1/248	1/7086
INDEL	Thyroid	VPS13C_I1766delinsTQLDYIF	HLA-C03:03	YIFIPQSSV	0.9696	0.9871	0.2684	70.8	0.2839	8.57	1/248	1/7086
INDEL	Thyroid	AKAP13_A1174Ifs*6	HLA-C03:03	CTMGDIFSL	0.9969	0.9905	0.9014	134.3	0.4378	28.16	1/248	1/7086
INDEL	Thyroid	DHX38_K106Ffs*12	HLA-C07:02	IRFRKTDII	0.8356	0.7293	0.9993	243.9	0.1604	17.03	1/248	1/7086
INDEL	Thyroid	DHX38_K106Ffs*12	HLA-C07:02	FRKTDIIGL	0.8991	0.8642	0.1383	159.6	0.0971	17.03	1/248	1/7086
INDEL	Thyroid	DHX38_K106Ffs*12	HLA-C07:02	FRKTDIIGLL	0.9714	0.8595	0.9711	432.7	0.2837	17.03	1/248	1/7086
INDEL	Thyroid	NUP88_S698_L699insRRSS	HLA-C03:03	SSLPKPTII	0.9911	0.9641	0.2636	301.9	0.7258	27.92	1/248	1/7086
INDEL	Thyroid	TEFM_F175Tfs*18	HLA-C03:03	NSIISIVTI	0.9957	0.9593	0.6655	289.3	0.7073	5.21	1/248	1/7086
INDEL	Thyroid	TEFM_F175Tfs*18	HLA-C03:03	SIISIVTIL	0.9951	0.9715	0.1807	280.2	0.694	5.21	1/248	1/7086
INDEL	Thyroid	ZNF521_G928Pfs*51	HLA-C07:02	LRRAVSLPF	0.8289	0.966	0.8378	180.9	0.1147	9.51	1/248	1/7086
INDEL	Thyroid	ZNF521_G928Pfs*51	HLA-B07:02	VPYLRRAVSL	0.9982	0.7633	0.0154	13.1	0.0385	9.51	1/248	1/7086
INDEL	Thyroid	RTTN_L497Sfs*38	HLA-A02:01	FLWTCLFL	0.9874	0.8308	1.5795	68.4	0.814	2.07	1/248	1/7086
INDEL	Thyroid	RTTN_L497Sfs*38	HLA-A29:02	FSFLWTCLF	0.9018	0.8587	0.7616	195.4	0.6288	2.07	1/248	1/7086
INDEL	Thyroid	RTTN_L497Sfs*38	HLA-C03:03	FSFLWTCLF	0.91	0.9969	1.2796	205.7	0.5736	2.07	1/248	1/7086
INDEL	Thyroid	RTTN_L497Sfs*38	HLA-A02:01	CLFLWNIQI	0.9446	0.8017	0.4456	236.3	1.8283	2.07	1/248	1/7086
INDEL	Thyroid	RTTN_L497Sfs*38	HLA-A02:01	FLWNIQIFM	0.9837	0.6123	0.0671	5.3	0.0401	2.07	1/248	1/7086
INDEL	Thyroid	RTTN_L497Sfs*38	HLA-A02:01	KLLWPIWNS	0.9422	0.5904	1.3596	97.2	1.0394	2.07	1/248	1/7086
INDEL	Thyroid	RTTN_L497Sfs*38	HLA-A29:02	YFSFLWTCLF	0.9556	0.7862	1.5385	26.6	0.1298	2.07	1/248	1/7086
INDEL	Thyroid	RTTN_L497Sfs*38	HLA-A02:01	FLWNIQIFMKL	0.9822	0.5808	1.4611	17.7	0.2331	2.07	1/248	1/7086
INDEL	Thyroid	RBFA_R164Gfs*7	HLA-C07:02	QRSAAHMGF	0.9358	0.9442	0.5128	404.8	0.2666	11.13	1/248	1/7086
INDEL	Thyroid	ZNF85_F575Lfs*8	HLA-C03:03	KALPHSSHL	0.9996	0.9959	0.193	20.3	0.0869	4.29	1/248	1/7086
INDEL	Thyroid	ZNF284_V248Gfs*166	HLA-C03:03	YTQEKNLIF	0.9974	0.9766	0.2122	229.5	0.6144	1.35	1/248	1/7086
INDEL	Thyroid	ZNF284_V248Gfs*166	HLA-C07:02	VRNVGRPSF	0.8101	0.9591	0.0808	178	0.1124	1.35	1/248	1/7086
INDEL	Thyroid	ZNF284_V248Gfs*166	HLA-B07:02	RPSFTIPSF	0.9974	0.524	0.0187	17.2	0.0591	1.35	1/248	1/7086
INDEL	Thyroid	ZNF284_V248Gfs*166	HLA-C03:03	FTIPSFGNI	0.988	0.9834	0.5419	38.7	0.1747	1.35	1/248	1/7086
INDEL	Thyroid	ZNF284_V248Gfs*166	HLA-C03:03	FGNIKESIL	0.9991	0.9914	0.7304	364.5	0.8093	1.35	1/248	1/7086
INDEL	Thyroid	ZNF284_V248Gfs*166	HLA-C03:03	RSHSNVIYV	0.8215	0.9899	0.3624	326.6	0.7599	1.35	1/248	1/7086
INDEL	Thyroid	ZNF284_V248Gfs*166	HLA-C03:03	RASIVDQIL	0.9716	0.9849	0.3283	136.1	0.4414	1.35	1/248	1/7086
INDEL	Thyroid	ZNF284_V248Gfs*166	HLA-A02:01	ILIGIPWST	0.9718	0.562	0.3235	17.4	0.2276	1.35	1/248	1/7086
INDEL	Thyroid	ZNF284_V248Gfs*166	HLA-C03:03	IALVRDQHL	0.9992	0.9796	0.2319	262.6	0.6682	1.35	1/248	1/7086
INDEL	Thyroid	ZNF284_V248Gfs*166	HLA-C07:02	VRDQHLIVI	0.9412	0.8094	0.2071	365.3	0.2415	1.35	1/248	1/7086
INDEL	Thyroid	ZNF284_V248Gfs*166	HLA-C03:03	RASGGPHVF	0.9676	0.9945	0.4263	71	0.2844	1.35	1/248	1/7086
INDEL	Thyroid	ZNF284_V248Gfs*166	HLA-C03:03	FQDISGSTM	0.9964	0.9919	0.1775	37.6	0.1704	1.35	1/248	1/7086
INDEL	Thyroid	SLC6A16_E475Gfs*13	HLA-A02:01	FLKASGVGPKV	0.9594	0.6517	1.4522	180.8	1.5458	1.49	1/248	2/7086
INDEL	Thyroid	VPS16_R116_R117insQ	HLA-C07:02	FRQRHFSM	0.9982	0.879	1.073	270.3	0.1771	36.57	1/248	1/7086
INDEL	Thyroid	PI4KA_L1496Dfs*24	HLA-A02:01	LLSLDLWPL	0.9748	0.8007	0.23	8.1	0.0857	15.61	1/248	1/7086
INDEL	Thyroid	PI4KA_L1496Dfs*24	HLA-A02:01	LLLSLDLWPL	0.9816	0.7342	0.3822	6.3	0.0547	15.61	1/248	1/7086
INDEL	Thyroid	SPECC1L_S101Rfs*20	HLA-C07:02	YFETHRHSF	0.9333	0.802	0.0979	132.7	0.0717	16.05	1/248	1/7086
INDEL	Thyroid	SPECC1L_S101Rfs*20	HLA-C07:02	SFFNQAEHF	0.7142	0.9672	0.0919	280.5	0.1844	16.05	1/248	1/7086
INDEL	Thyroid	SPECC1L_S101Rfs*20	HLA-C07:02	FFNQAEHFY	0.7801	0.9725	0.1609	407.4	0.2683	16.05	1/248	1/7086
INDEL	Thyroid	SPECC1L_S101Rfs*20	HLA-C07:02	RYFETHRHSF	0.9879	0.865	0.0412	124.7	0.0672	16.05	1/248	1/7086
INDEL	Thyroid	EIF4ENIF1_S540_S541insNKYI	HLA-A02:01	YISNLLSGL	0.9694	0.5042	0.2183	46.6	0.593	18.76	1/248	2/7086
INDEL	Thyroid	EIF4ENIF1_S540_S541insNKYI	HLA-C03:03	YISNLLSGL	0.9963	0.9824	0.7376	186.6	0.5384	18.76	1/248	1/7086
INDEL	Thyroid	NHSL2_G704Efs*23	HLA-B07:02	KPRGVNSTL	0.9998	0.6296	0.0073	2.9	0.0059	1.05	1/248	1/7086
INDEL	Thyroid	NHSL2_G704Efs*23	HLA-B07:02	KPRGVNSTLI	0.9957	0.5005	0.2882	12	0.0339	1.05	1/248	1/7086
INDEL	Thyroid	NHSL2_G704Efs*23	HLA-B07:02	KPRGVNSTLIS	0.9998	0.5827	1.516	239.1	0.5317	1.05	1/248	1/7086
INDEL	Thyroid	NEXN_N154Ifs*17	HLA-C07:01	QRKEMIHYL	0.9978	0.8032	0.0618	106.4	0.0409	11.14	2/248	2/7086
INDEL	Thyroid	NEXN_N154Ifs*17	HLA-C07:01	QRKEMIHYL	0.9978	0.8032	0.0618	106.4	0.0409	11.14	2/248	2/7086
INDEL	Thyroid	VPS13C_I2865Dfs*22	HLA-A02:01	SLLYHCKQV	0.9018	0.6667	0.4426	187.6	1.5807	14.49	1/248	1/7086
INDEL	Thyroid	VPS13C_I2865Dfs*22	HLA-A02:01	LLYHCKQVI	0.8549	0.5574	1.0863	256.2	1.9287	14.49	1/248	1/7086
INDEL	Thyroid	IDE_V946Efs*33	HLA-A02:01	FLPGKWILV	0.996	0.7885	0.0008	7.6	0.0767	11.05	2/248	2/7086
INDEL	Thyroid	IDE_V946Efs*33	HLA-A02:01	FLPGKWILV	0.996	0.7885	0.0008	7.6	0.0767	11.05	2/248	2/7086
INDEL	Thyroid	IDE_V946Efs*33	HLA-A02:01	VLLLESSHV	0.9824	0.5154	0.4246	57.3	0.7036	11.05	2/248	2/7086
INDEL	Thyroid	IDE_V946Efs*33	HLA-A02:01	VLLLESSHV	0.9824	0.5154	0.4246	57.3	0.7036	11.05	2/248	2/7086
INDEL	Thyroid	IDE_V946Efs*33	HLA-A02:01	SMFLPGKWIL	0.8909	0.5505	0.9297	118.9	1.1823	11.05	2/248	2/7086
INDEL	Thyroid	IDE_V946Efs*33	HLA-A02:01	SMFLPGKWIL	0.8909	0.5505	0.9297	118.9	1.1823	11.05	2/248	2/7086
INDEL	Thyroid	IDE_V946Efs*33	HLA-A02:01	FLPGKWILVL	0.9805	0.6461	0.0794	49.6	0.6249	11.05	2/248	2/7086
INDEL	Thyroid	IDE_V946Efs*33	HLA-A02:01	FLPGKWILVL	0.9805	0.6461	0.0794	49.6	0.6249	11.05	2/248	2/7086
INDEL	Thyroid	IDE_V946Efs*33	HLA-B27:05	IRYPSMFLPGK	0.9998	0.6832	0.5999	119	0.3944	11.05	1/248	1/7086
INDEL	Thyroid	IDE_V946Efs*33	HLA-A02:01	SMFLPGKWILV	0.9886	0.5875	0.4599	120	1.1897	11.05	2/248	2/7086
INDEL	Thyroid	IDE_V946Efs*33	HLA-A02:01	SMFLPGKWILV	0.9886	0.5875	0.4599	120	1.1897	11.05	2/248	2/7086
INDEL	Thyroid	KCNQ5_K741Sfs*64	HLA-B15:02	TLQAYRKAF	0.751	0.9287	0.7304	290.9	0.4732	5.75	1/248	1/7086
INDEL	Thyroid	KCNQ5_K741Sfs*64	HLA-C08:01	FLTSPPALL	0.7206	0.9945	0.3941	302.8	0.107	5.75	2/248	2/7086
INDEL	Thyroid	KCNQ5_K741Sfs*64	HLA-C08:01	FLTSPPALL	0.7206	0.9945	0.3941	302.8	0.107	5.75	2/248	2/7086
INDEL	Thyroid	KCNQ5_K741Sfs*64	HLA-A11:01	RLHSQISPR	0.9583	0.5255	0.361	438.3	1.631	5.75	1/248	1/7086
INDEL	Thyroid	MSANTD2_G404Vfs*62	HLA-C08:01	IAHSKPTVL	0.5247	0.9815	0.0282	406.9	0.1469	16.37	2/248	2/7086
INDEL	Thyroid	MSANTD2_G404Vfs*62	HLA-C08:01	IAHSKPTVL	0.5247	0.9815	0.0282	406.9	0.1469	16.37	2/248	2/7086
INDEL	Thyroid	MSANTD2_G404Vfs*62	HLA-B15:02	GVFLKAQAF	0.9769	0.9693	0.1354	392.6	0.5893	16.37	1/248	1/7086
INDEL	Thyroid	MSANTD2_G404Vfs*62	HLA-B15:02	AQAFMPLAM	0.946	0.9335	0.0255	192.6	0.3239	16.37	1/248	1/7086
INDEL	Thyroid	MSANTD2_G404Vfs*62	HLA-B15:13	FQHKPHYRW	0.8905	0.9037	0.1369	413.7	0.1002	16.37	1/248	1/7086
INDEL	Thyroid	ZMPSTE24_S352Efs*29	HLA-B18:01	DEFFPVFF	0.9992	0.9849	0.1242	43.5	0.0314	52.78	1/248	1/7086
INDEL	Thyroid	ZMPSTE24_S352Efs*29	HLA-B18:01	DEFFPVFFF	0.9951	0.981	0.1025	12.2	0.0093	52.78	1/248	1/7086
INDEL	Thyroid	ZMPSTE24_S352Efs*29	HLA-A02:06	GAFCCIWFL	0.8934	0.7458	0.2856	46.2	0.5791	52.78	1/248	1/7086
INDEL	Thyroid	ZMPSTE24_S352Efs*29	HLA-A02:06	IIEPDEFFPV	0.9714	0.6483	1.6564	22.8	0.2904	52.78	1/248	1/7086
INDEL	Thyroid	ZMPSTE24_S352Efs*29	HLA-A02:06	IIIEPDEFFPV	0.9958	0.5992	1.0239	8.9	0.0876	52.78	1/248	1/7086
INDEL	Thyroid	ZMPSTE24_S352delinsRTFKKFYLLT	HLA-C03:03	YLLTQMNSF	0.8605	0.9865	1.9543	490.9	1.0004	52.78	1/248	1/7086
INDEL	Thyroid	ZMPSTE24_S352delinsRTFKKFYLLT	HLA-A02:06	LLTQMNSFL	0.934	0.6297	0.6535	220.9	1.9404	52.78	1/248	1/7086
INDEL	Thyroid	ZMPSTE24_S352delinsRTFKKFYLLT	HLA-B18:01	TQMNSFLCF	0.7263	0.8587	1.2796	236.2	0.1574	52.78	1/248	1/7086
INDEL	Thyroid	ZMPSTE24_S352delinsRTFKKFYLLT	HLA-A02:06	YLLTQMNSFL	0.9834	0.6397	0.6572	49.4	0.6123	52.78	1/248	1/7086
INDEL	Thyroid	CALCRL_I284Hfs*23	HLA-A02:06	VLIPISSTL	0.963	0.6189	0.0396	99.4	1.0922	12.91	1/248	1/7086
INDEL	Thyroid	CALCRL_I284Hfs*23	HLA-C03:03	VLIPISSTL	0.9968	0.9846	0.0794	24.4	0.1069	12.91	1/248	1/7086
INDEL	Thyroid	CALCRL_I284Hfs*23	HLA-C03:03	IPISSTLSM	0.9956	0.984	0.5471	49.2	0.2078	12.91	1/248	1/7086
INDEL	Thyroid	CALCRL_I284Hfs*23	HLA-A02:06	STLSMAQFV	0.9571	0.74	0.2793	44.2	0.5571	12.91	1/248	1/7086
INDEL	Thyroid	CALCRL_I284Hfs*23	HLA-A02:06	LSMAQFVLL	0.9396	0.6273	1.0214	60.8	0.7369	12.91	1/248	1/7086
INDEL	Thyroid	CALCRL_I284Hfs*23	HLA-C03:03	LSMAQFVLL	0.9989	0.9746	0.6996	30.2	0.1351	12.91	1/248	1/7086
INDEL	Thyroid	TTLL4_E531Vfs*29	HLA-C03:03	FSGGRLRVL	0.9975	0.9628	0.1641	208.4	0.5783	4.13	1/248	2/7086
INDEL	Thyroid	TTLL4_E531Vfs*29	HLA-B18:01	DENEEVTVRF	0.9984	0.9257	0.2239	146.4	0.0951	4.13	1/248	1/7086
INDEL	Thyroid	UPF2_V922Cfs*13	HLA-A24:02	HYSGHMWPV	0.9119	0.751	1.0314	201.3	0.3644	21.44	1/248	1/7086
INDEL	Thyroid	UPF2_V922Cfs*13	HLA-C03:03	YSGHMWPVL	0.9967	0.9904	0.5365	173.8	0.5129	21.44	1/248	1/7086
INDEL	Thyroid	UPF2_V922Cfs*13	HLA-A24:02	HYSGHMWPVL	0.9954	0.7907	0.5094	183.7	0.3401	21.44	1/248	1/7086
INDEL	Thyroid	TPP1_H298Qfs*28	HLA-C03:03	YSSPGRQAL	0.9998	0.9691	0.0658	5.1	0.0183	151.29	1/248	1/7086
INDEL	Thyroid	TPP1_H298Qfs*28	HLA-C03:03	SVMSQPCHM	0.9909	0.9881	0.7726	186.2	0.5377	151.29	1/248	1/7086
INDEL	Thyroid	TRGV4_S36Lfs*61	HLA-A02:01	SLVILLKEV	0.9616	0.7008	0.1227	95.7	1.0295	1.32	1/248	1/7086
INDEL	Thyroid	TRGV4_S36Lfs*61	HLA-A02:01	ILLKEVPAT	0.9729	0.6458	0.651	106.8	1.1007	1.32	1/248	1/7086
INDEL	Thyroid	TRGV4_S36Lfs*61	HLA-B39:01	TMTPTPPAL	0.6977	0.9645	1.8135	414.6	0.4102	1.32	1/248	1/7086
INDEL	Thyroid	TRGV4_S36Lfs*61	HLA-A02:01	SLLKSLVILL	0.9716	0.5486	0.7415	34.2	0.4544	1.32	1/248	1/7086
INDEL	Thyroid	CCBL2_K181Sfs*19	HLA-C12:03	FIPLRSSQL	0.9993	0.9877	0.3639	176.9	0.7433	47.57	1/248	1/7086
INDEL	Thyroid	CCBL2_K181Sfs*19	HLA-C12:03	RSSQLFNLF	0.5882	0.9469	0.0631	202.9	0.8325	47.57	1/248	1/7086
INDEL	Thyroid	CCBL2_K181Sfs*19	HLA-C12:03	FMEKDGLVL	0.9847	0.9876	1.1888	318.1	1.135	47.57	1/248	1/7086
INDEL	Thyroid	CCBL2_K181Sfs*19	HLA-A24:02	VFIPLRSSQLF	0.9998	0.7149	0.148	61.2	0.1381	47.57	1/248	1/7086
INDEL	Thyroid	CLK4_E204Kfs*11	HLA-C12:03	AARSKLFSL	0.9929	0.9845	0.2089	88.5	0.4013	11.1	1/248	1/7086
INDEL	Thyroid	PHF3_V586Dfs*16	HLA-C12:03	INFTNFQAL	0.8294	0.9903	1.0016	232.2	0.9173	21.83	1/248	1/7086
INDEL	Thyroid	PHF3_V586Dfs*16	HLA-C12:03	TNFQALNSF	0.6971	0.985	1.224	360.9	1.2448	21.83	1/248	1/7086
INDEL	Thyroid	PHF3_V586Dfs*16	HLA-C12:03	FTNFQALNSF	0.9981	0.9881	0.9867	127.4	0.5601	21.83	1/248	1/7086
INDEL	Thyroid	PYGO1_Q45_G46insYG	HLA-C12:03	YGGPSFPPL	0.9597	0.9894	0.6233	235.7	0.9262	4.46	2/248	2/7086
INDEL	Thyroid	ZNF30_G396Lfs*9	HLA-C12:03	VQHGRLHTL	0.9909	0.9725	0.3941	131.2	0.5755	2.79	1/248	1/7086
INDEL	Thyroid	LRRK2_W1393Gfs*17	HLA-A33:03	NVGILQVVR	0.8764	0.5343	0.4263	171.6	0.5789	10.69	1/248	1/7086
INDEL	Thyroid	RARA_T259Hfs*65	HLA-A33:03	DLHAVHAR	0.982	0.6079	0.8698	400.5	1.0675	16.52	1/248	1/7086
INDEL	Thyroid	RARA_T259Hfs*65	HLA-C07:01	ARAGHHDLL	0.9787	0.69	0.1625	420.1	0.1452	16.52	1/248	1/7086
INDEL	Thyroid	RARA_T259Hfs*65	HLA-C07:01	LRPPHRPGL	0.9767	0.6857	0.1317	345.8	0.1239	16.52	1/248	1/7086
INDEL	Thyroid	PIGM_F396Kfs*11	HLA-A24:02	IWLAGLFKAF	0.9954	0.8196	0.4845	25.7	0.054	12.84	1/248	1/7086
INDEL	Thyroid	PIGM_F396Kfs*11	HLA-A24:02	IWLAGLFKAFF	0.9973	0.7769	1.8911	108.4	0.2254	12.84	1/248	1/7086
INDEL	Thyroid	TOR3A_S164Nfs*29	HLA-A11:01	STAGLAQAR	0.9968	0.509	0.2102	252	1.1692	33.19	1/248	1/7086
INDEL	Thyroid	TOR3A_S164Nfs*29	HLA-A11:01	TSWHGCWWR	0.9437	0.7015	0.9103	398.7	1.5486	33.19	1/248	1/7086
INDEL	Thyroid	TOR3A_S164Nfs*29	HLA-A11:01	RTSWHGCWWR	0.979	0.5401	0.3941	174.1	0.9149	33.19	1/248	1/7086
INDEL	Thyroid	MTR_G492Sfs*9	HLA-A24:02	KYSCYGGHGF	0.9952	0.5401	0.3685	107.1	0.2235	21.11	1/248	1/7086
INDEL	Thyroid	CLASP1_E1409Vfs*81	HLA-C07:02	RRPTTPSTL	0.8357	0.9594	0.0734	303.9	0.2	19.9	2/248	2/7086
INDEL	Thyroid	CLASP1_E1409Vfs*81	HLA-C07:02	RRPTTPSTL	0.8357	0.9594	0.0734	303.9	0.2	19.9	2/248	2/7086
INDEL	Thyroid	MYO3B_N777delinsMFYVY	HLA-C07:02	FYVYRPLL	0.9734	0.6604	0.2151	452.8	0.2953	5.54	2/248	2/7086
INDEL	Thyroid	MYO3B_N777delinsMFYVY	HLA-C07:02	FYVYRPLL	0.9734	0.6604	0.2151	452.8	0.2953	5.54	2/248	2/7086
INDEL	Thyroid	MYO3B_N777delinsMFYVY	HLA-C07:02	MFYVYRPLL	0.5657	0.6781	1.0366	45.4	0.0185	5.54	2/248	2/7086
INDEL	Thyroid	MYO3B_N777delinsMFYVY	HLA-C07:02	MFYVYRPLL	0.5657	0.6781	1.0366	45.4	0.0185	5.54	2/248	2/7086
INDEL	Thyroid	MYO3B_N777delinsMFYVY	HLA-C07:02	YRPLLDMFL	0.9463	0.8704	0.3318	62.1	0.0301	5.54	2/248	2/7086
INDEL	Thyroid	MYO3B_N777delinsMFYVY	HLA-C07:02	YRPLLDMFL	0.9463	0.8704	0.3318	62.1	0.0301	5.54	2/248	2/7086
INDEL	Thyroid	GLB1L_E357Lfs*53	HLA-A24:02	YQGSSFGTF	0.8395	0.6739	1.4522	233.1	0.404	17.62	1/248	1/7086
INDEL	Thyroid	GLB1L_E357Lfs*53	HLA-A24:02	ALPPWAHSF	0.9954	0.7294	0.0441	85.3	0.1851	17.62	1/248	1/7086
INDEL	Thyroid	GLB1L_E357Lfs*53	HLA-A24:02	EYQGSSFGTF	0.9951	0.7292	0.2913	40.8	0.0905	17.62	1/248	1/7086
INDEL	Thyroid	GLB1L_E357Lfs*53	HLA-A24:02	SAPGWAFTGF	0.9857	0.6792	1.8524	347.9	0.5288	17.62	1/248	1/7086
INDEL	Thyroid	GLB1L_E357Lfs*53	HLA-A24:02	LALPPWAHSF	0.9929	0.7275	0.4563	389.6	0.5648	17.62	1/248	1/7086
INDEL	Thyroid	SETD5_R621Yfs*37	HLA-C07:02	SRISYSLSV	0.9463	0.8838	0.2138	71.5	0.036	31.79	2/248	2/7086
INDEL	Thyroid	SETD5_R621Yfs*37	HLA-C07:02	SRISYSLSV	0.9463	0.8838	0.2138	71.5	0.036	31.79	2/248	2/7086
INDEL	Thyroid	HPS3_Q863Tfs*11	HLA-A24:02	TTVSYMWSF	0.9626	0.5022	1.2147	348.5	0.5294	16.47	1/248	1/7086
INDEL	Thyroid	ECT2_K541Ffs*16	HLA-A24:02	RFGKNLPSL	0.9857	0.5344	0.5686	315.6	0.4979	4.16	1/248	1/7086
INDEL	Thyroid	DCLK2_S415Ffs*31	HLA-A11:01	IVHWKGVCPK	0.9948	0.5449	0.7683	58.7	0.3601	3.46	1/248	1/7086
INDEL	Thyroid	CMYA5_Y2979Tfs*11	HLA-B38:02	MQDKLETIL	0.97	0.9848	0.2482	295.2	0.0429	7.6	1/248	1/7086
INDEL	Thyroid	PHIP_A1554Dfs*15	HLA-C07:02	SFQSWSIQF	0.6298	0.9492	0.3152	480.7	0.3151	13.41	2/248	2/7086
INDEL	Thyroid	PHIP_A1554Dfs*15	HLA-C07:02	SFQSWSIQF	0.6298	0.9492	0.3152	480.7	0.3151	13.41	2/248	2/7086
INDEL	Thyroid	ZNF292_H563Afs*10	HLA-C07:02	RHAQKAHSL	0.8642	0.9652	0.6674	405.9	0.2673	9.79	2/248	2/7086
INDEL	Thyroid	ZNF292_H563Afs*10	HLA-C07:02	RHAQKAHSL	0.8642	0.9652	0.6674	405.9	0.2673	9.79	2/248	2/7086
INDEL	Thyroid	ABCA13_I2874Mfs*26	HLA-A24:02	HFSVWRNTW	0.9761	0.504	0.2009	314.9	0.4971	1.05	1/248	1/7086
INDEL	Thyroid	ABCA13_I2874Mfs*26	HLA-B38:02	WRNTWEDYL	0.9895	0.9802	0.6572	382.5	0.0588	1.05	1/248	1/7086
INDEL	Thyroid	ABCA13_I2874Mfs*26	HLA-C07:02	WRNTWEDYL	0.7916	0.9771	0.8749	242.1	0.1592	1.05	2/248	2/7086
INDEL	Thyroid	ABCA13_I2874Mfs*26	HLA-C07:02	WRNTWEDYL	0.7916	0.9771	0.8749	242.1	0.1592	1.05	2/248	2/7086
INDEL	Thyroid	ABCA13_I2874Mfs*26	HLA-B38:02	NHFSVWRNTW	0.8418	0.9839	0.2054	435.8	0.0696	1.05	1/248	1/7086
INDEL	Thyroid	KMT2E_G372Efs*5	HLA-B38:02	EQFEANEVF	0.759	0.9464	0.4808	380.1	0.0584	30.95	1/248	1/7086
INDEL	Thyroid	SNX16_D92Vfs*15	HLA-C07:02	TRPRVYINL	0.9388	0.9028	0.037	258.4	0.1695	12.92	2/248	2/7086
INDEL	Thyroid	SNX16_D92Vfs*15	HLA-C07:02	TRPRVYINL	0.9388	0.9028	0.037	258.4	0.1695	12.92	2/248	2/7086
INDEL	Thyroid	MKI67_E519Vfs*25	HLA-C07:02	LRPELFDVF	0.904	0.9834	0.0396	357.2	0.2364	1.69	2/248	2/7086
INDEL	Thyroid	MKI67_E519Vfs*25	HLA-C07:02	LRPELFDVF	0.904	0.9834	0.0396	357.2	0.2364	1.69	2/248	2/7086
INDEL	Thyroid	RTN3_E515Lfs*21	HLA-C07:02	FRLKNLFPF	0.9561	0.9577	0.538	64.4	0.0316	106.81	2/248	2/7086
INDEL	Thyroid	RTN3_E515Lfs*21	HLA-C07:02	FRLKNLFPF	0.9561	0.9577	0.538	64.4	0.0316	106.81	2/248	2/7086
INDEL	Thyroid	NCAPD3_C203Wfs*51	HLA-C07:02	VFLERKATM	0.6205	0.9512	0.0861	248.3	0.1632	8.09	2/248	2/7086
INDEL	Thyroid	NCAPD3_C203Wfs*51	HLA-C07:02	VFLERKATM	0.6205	0.9512	0.0861	248.3	0.1632	8.09	2/248	2/7086
INDEL	Thyroid	NCAPD3_C203Wfs*51	HLA-A24:02	IWPDFFCPGPF	0.9937	0.7215	0.7456	153.7	0.2939	8.09	1/248	1/7086
INDEL	Thyroid	HEBP1_N106Afs*41	HLA-C07:02	FRIPATNF	0.9965	0.9566	0.2446	419.2	0.2756	60.13	2/248	2/7086
INDEL	Thyroid	HEBP1_N106Afs*41	HLA-C07:02	FRIPATNF	0.9965	0.9566	0.2446	419.2	0.2756	60.13	2/248	2/7086
INDEL	Thyroid	HEBP1_N106Afs*41	HLA-A11:01	ATHQLPVTK	0.9996	0.521	0.0025	28.7	0.1704	60.13	1/248	1/7086
INDEL	Thyroid	HEBP1_N106Afs*41	HLA-A11:01	KATHQLPVTK	0.9967	0.5024	0.4382	121.5	0.7033	60.13	1/248	1/7086
INDEL	Thyroid	XRCC6BP1_V138Sfs*41	HLA-C07:02	WRAQRFELL	0.9772	0.9613	0.3956	49.2	0.0203	12.91	3/248	3/7086
INDEL	Thyroid	XRCC6BP1_V138Sfs*41	HLA-C07:02	WRAQRFELL	0.9772	0.9613	0.3956	49.2	0.0203	12.91	3/248	3/7086
INDEL	Thyroid	SYT1_D116Efs*15	HLA-C07:02	LRPSRMMML	0.9605	0.9064	0.241	38	0.0149	3.31	2/248	2/7086
INDEL	Thyroid	SYT1_D116Efs*15	HLA-C07:02	LRPSRMMML	0.9605	0.9064	0.241	38	0.0149	3.31	2/248	2/7086
INDEL	Thyroid	SPPL3_S16Efs*17	HLA-C07:02	YISDFHSSY	0.8075	0.7309	0.0481	475.9	0.3115	33.32	2/248	2/7086
INDEL	Thyroid	SPPL3_S16Efs*17	HLA-C07:02	YISDFHSSY	0.8075	0.7309	0.0481	475.9	0.3115	33.32	2/248	2/7086
INDEL	Thyroid	SEC23A_S588Vfs*27	HLA-B38:02	FHLRRSVPL	0.9953	0.9452	0.5245	188	0.0219	19.65	1/248	1/7086
INDEL	Thyroid	SEC23A_S588Vfs*27	HLA-C07:02	FHLRRSVPL	0.753	0.9602	0.9525	225.5	0.1479	19.65	2/248	2/7086
INDEL	Thyroid	SEC23A_S588Vfs*27	HLA-C07:02	FHLRRSVPL	0.753	0.9602	0.9525	225.5	0.1479	19.65	2/248	2/7086
INDEL	Thyroid	SEC23A_S588Vfs*27	HLA-C07:02	MRVHIIVTI	0.9788	0.8852	0.0154	252.8	0.1661	19.65	2/248	2/7086
INDEL	Thyroid	SEC23A_S588Vfs*27	HLA-C07:02	MRVHIIVTI	0.9788	0.8852	0.0154	252.8	0.1661	19.65	2/248	2/7086
INDEL	Thyroid	FAM98B_Q320Pfs*16	HLA-C07:02	MFLPKDFSL	0.862	0.9426	0.184	107.5	0.0583	15.52	2/248	2/7086
INDEL	Thyroid	FAM98B_Q320Pfs*16	HLA-C07:02	MFLPKDFSL	0.862	0.9426	0.184	107.5	0.0583	15.52	2/248	2/7086
INDEL	Thyroid	VPS13C_I817Ffs*6	HLA-B38:02	MHVRFYFHF	0.9263	0.9745	0.6911	493.1	0.0859	18.04	1/248	1/7086
INDEL	Thyroid	RBBP6_Y529Lfs*70	HLA-A11:01	VSSWPATTR	0.9905	0.5908	0.1641	189.7	0.9679	21.24	1/248	1/7086
INDEL	Thyroid	RBBP6_Y529Lfs*70	HLA-A11:01	SVSSWPATTR	0.9973	0.5591	0.1761	121.3	0.7025	21.24	1/248	1/7086
INDEL	Thyroid	CDK12_S987Rfs*18	HLA-C07:02	LREEFRRFL	0.9238	0.9353	0.7438	144.6	0.0824	12.79	2/248	2/7086
INDEL	Thyroid	CDK12_S987Rfs*18	HLA-C07:02	LREEFRRFL	0.9238	0.9353	0.7438	144.6	0.0824	12.79	2/248	2/7086
INDEL	Thyroid	CDK12_S987Rfs*18	HLA-C07:02	FRRFLSFLL	0.9674	0.9113	0.7376	64.2	0.0315	12.79	2/248	2/7086
INDEL	Thyroid	CDK12_S987Rfs*18	HLA-C07:02	FRRFLSFLL	0.9674	0.9113	0.7376	64.2	0.0315	12.79	2/248	2/7086
INDEL	Thyroid	SPAG9_F712Lfs*17	HLA-A11:01	GSVVGASVLK	0.9987	0.5025	0.2745	36.9	0.2249	27.92	1/248	1/7086
INDEL	Thyroid	SPAG9_F712Lfs*17	HLA-A11:01	GGSVVGASVLK	0.9963	0.6387	1.0705	216.1	1.0555	27.92	1/248	1/7086
INDEL	Thyroid	RPRD1A_L129Sfs*17	HLA-C07:02	IRSLGSELM	0.8373	0.9029	0.7226	395.1	0.2605	28.12	2/248	2/7086
INDEL	Thyroid	RPRD1A_L129Sfs*17	HLA-C07:02	IRSLGSELM	0.8373	0.9029	0.7226	395.1	0.2605	28.12	2/248	2/7086
INDEL	Thyroid	RPRD1A_L129Sfs*17	HLA-A11:01	RSLGSELMNR	0.9926	0.5023	0.0919	101.7	0.5985	28.12	1/248	1/7086
INDEL	Thyroid	ZNF302_F394_C395insHS	HLA-B38:02	FHSCCSSHL	0.99	0.9332	0.4213	183.1	0.0211	21.38	1/248	1/7086
INDEL	Thyroid	CSNK1E_E247Rfs*15	HLA-C07:02	SRILNIPQL	0.8652	0.9759	0.0187	69.9	0.035	48.78	2/248	2/7086
INDEL	Thyroid	CSNK1E_E247Rfs*15	HLA-C07:02	SRILNIPQL	0.8652	0.9759	0.0187	69.9	0.035	48.78	2/248	2/7086
INDEL	Thyroid	CSNK1E_E247Rfs*15	HLA-C07:02	SRILNIPQLL	0.9879	0.9809	0.4769	489.8	0.3219	48.78	2/248	2/7086
INDEL	Thyroid	CSNK1E_E247Rfs*15	HLA-C07:02	SRILNIPQLL	0.9879	0.9809	0.4769	489.8	0.3219	48.78	2/248	2/7086
INDEL	Thyroid	TUBGCP6_K34Sfs*46	HLA-A11:01	SVNRKRASK	0.9943	0.6021	0.7533	174.3	0.9157	32.11	1/248	1/7086
INDEL	Thyroid	TUBGCP6_K34Sfs*46	HLA-C07:02	SRRWPTMLF	0.8845	0.8738	0.2287	55.8	0.0263	32.11	2/248	2/7086
INDEL	Thyroid	TUBGCP6_K34Sfs*46	HLA-C07:02	SRRWPTMLF	0.8845	0.8738	0.2287	55.8	0.0263	32.11	2/248	2/7086
INDEL	Thyroid	TUBGCP6_K34Sfs*46	HLA-A24:02	RWPTMLFSQI	0.9911	0.6453	0.5868	39.3	0.0864	32.11	1/248	1/7086
INDEL	Thyroid	TUBGCP6_K34Sfs*46	HLA-A24:02	RWPTMLFSQIF	0.9973	0.6737	0.4902	32.1	0.0716	32.11	1/248	1/7086
INDEL	Thyroid	POLA1_D1343Efs*10	HLA-C07:02	KYYEAIKGF	0.55	0.8979	0.0835	162.6	0.0993	6.08	2/248	2/7086
INDEL	Thyroid	POLA1_D1343Efs*10	HLA-C07:02	KYYEAIKGF	0.55	0.8979	0.0835	162.6	0.0993	6.08	2/248	2/7086
INDEL	Thyroid	POLA1_D1343Efs*10	HLA-C07:02	YYEAIKGFL	0.7559	0.8553	0.4078	231.6	0.1522	6.08	2/248	2/7086
INDEL	Thyroid	POLA1_D1343Efs*10	HLA-C07:02	YYEAIKGFL	0.7559	0.8553	0.4078	231.6	0.1522	6.08	2/248	2/7086
INDEL	Thyroid	ZFHX3_R2988Efs*33	HLA-C07:02	AFWYKPNEL	0.5219	0.9649	0.0465	343.1	0.2274	27.13	1/248	1/7086
INDEL	Thyroid	BACH1_T291Rfs*16	HLA-B27:05	RRKILLLSA	0.9982	0.7948	0.5471	64	0.2117	36.65	1/248	1/7086
INDEL	Thyroid	BACH1_T291Rfs*16	HLA-B27:05	RRKILLLSAQ	0.9986	0.5239	1.8393	107.7	0.3595	36.65	1/248	1/7086
INDEL	Thyroid	BACH1_T291Rfs*16	HLA-B27:05	RKILLLSAQL	0.9998	0.8446	1.8454	435.2	1.1211	36.65	1/248	1/7086
INDEL	Thyroid	BACH1_T291Rfs*16	HLA-B27:05	RRKILLLSAQL	0.9999	0.6851	1.1651	40.4	0.1101	36.65	1/248	1/7086
INDEL	Thyroid	TBC1D2B_E452Rfs*38	HLA-B07:02	SARARATGL	0.9959	0.691	0.5077	51.9	0.1789	9.3	1/248	1/7086
INDEL	Thyroid	TBC1D2B_E452Rfs*38	HLA-A11:01	ATGLLPPWR	0.972	0.8312	0.5886	405.2	1.5627	9.3	1/248	1/7086
INDEL	Thyroid	TBC1D2B_E452Rfs*38	HLA-B07:02	LPPWRPAPL	0.9994	0.7721	0.2165	32.4	0.1148	9.3	1/248	1/7086
INDEL	Thyroid	TBC1D2B_E452Rfs*38	HLA-B07:02	RPAPLRLCL	0.9998	0.6179	0.0523	3.5	0.007	9.3	1/248	1/7086
INDEL	Thyroid	TBC1D2B_E452Rfs*38	HLA-B07:02	LLPPWRPAPL	0.9039	0.7543	0.7573	265.3	0.571	9.3	1/248	1/7086
INDEL	Thyroid	TBC1D2B_E452Rfs*38	HLA-C07:02	WRPAPLRLCL	0.9844	0.9674	1.5029	476.4	0.3118	9.3	1/248	1/7086
INDEL	Thyroid	TBC1D2B_E452Rfs*38	HLA-B07:02	RPAPLRLCLL	0.9989	0.6194	0.193	6.1	0.0102	9.3	1/248	1/7086
INDEL	Thyroid	TBC1D2B_E452Rfs*38	HLA-B07:02	LPPWRPAPLRL	0.9989	0.7003	0.9735	167.1	0.4184	9.3	1/248	1/7086
INDEL	Thyroid	ATM_E16Nfs*18	HLA-C07:02	CRQLNMIEL	0.9045	0.8305	0.719	340.9	0.2259	9.79	1/248	1/7086
INDEL	Thyroid	ZC3H18_P606Rfs*32	HLA-B07:02	RPRPQHLP	0.9984	0.5674	1.1339	287.2	0.6011	12.29	1/248	1/7086
INDEL	Thyroid	ZC3H18_P606Rfs*32	HLA-B07:02	RPRPQHLPH	0.9928	0.5453	0.5657	160.4	0.4063	12.29	1/248	1/7086
INDEL	Thyroid	ZC3H18_P606Rfs*32	HLA-B07:02	RPQHLPHIDL	0.9908	0.5474	0.1072	20.1	0.0698	12.29	1/248	1/7086
INDEL	Thyroid	ALS2_F792Sfs*18	HLA-A02:01	WLWEDSSFL	0.994	0.625	0.1196	2.6	0.008	3.88	1/248	1/7086
INDEL	Thyroid	ALS2_F792Sfs*18	HLA-C03:04	SSFLLSLPL	0.9968	0.9928	0.6058	22	0.0949	3.88	1/248	1/7086
INDEL	Thyroid	ALS2_F792Sfs*18	HLA-C12:03	SSFLLSLPL	0.9667	0.9855	0.7438	29	0.1155	3.88	1/248	1/7086
INDEL	Thyroid	ALS2_F792Sfs*18	HLA-A02:01	WLWEDSSFLL	0.9977	0.5747	0.2712	3.8	0.0171	3.88	1/248	1/7086
INDEL	Thyroid	MRPL38_S282Lfs*30	HLA-C03:04	RTHAPHPAI	0.9172	0.9894	0.5962	72.6	0.2896	2.28	1/248	1/7086
INDEL	Thyroid	MRPL38_S282Lfs*30	HLA-C12:03	RTHAPHPAI	0.8421	0.9781	0.5038	65.4	0.3091	2.28	1/248	1/7086
INDEL	Thyroid	MRPL38_S282Lfs*30	HLA-C03:04	WPSGPSALL	0.9904	0.9799	1.5753	464.8	0.9586	2.28	1/248	1/7086
INDEL	Thyroid	MRPL38_S282Lfs*30	HLA-C03:04	ISWPSGPSAL	0.999	0.9705	0.3184	121.8	0.4104	2.28	1/248	1/7086
INDEL	Thyroid	MRPL38_S282Lfs*30	HLA-C12:03	ISWPSGPSAL	0.9965	0.9895	0.4397	335.7	1.1792	2.28	1/248	1/7086
INDEL	Thyroid	PCDHGA11_N447Kfs*29	HLA-B51:01	LPFFLTPLTL	0.9794	0.8138	0.2856	282.7	0.044	1.53	1/248	1/7086
INDEL	Thyroid	MYOM2_Y715Ifs*15	HLA-B15:16	LTVPSHPIL	0.9843	0.7998	0.2367	41.3	0.1062	1.33	1/248	1/7086
INDEL	Thyroid	MYOM2_Y715Ifs*15	HLA-C14:02	TVPSHPILM	0.8416	0.9658	0.361	178.6	0.5538	1.33	1/248	1/7086
INDEL	Thyroid	MYOM2_Y715Ifs*15	HLA-B15:16	LTVPSHPILM	0.9962	0.7362	0.9253	53	0.1573	1.33	1/248	1/7086
INDEL	Thyroid	TG_W1892Mfs*38	HLA-B15:16	FSLCAGALF	0.9889	0.8055	0.7058	13.2	0.0106	7048.69	1/248	1/7086
INDEL	Thyroid	WARS_F289Cfs*36	HLA-B15:16	LSHVPLTRI	0.992	0.5556	1.0292	64.2	0.2069	14.5	1/248	1/7086
INDEL	Thyroid	ZNHIT6_S292Lfs*6	HLA-C03:03	VARTADHIL	0.9922	0.9852	0.4295	231.4	0.6177	4.17	1/248	1/7086
INDEL	Thyroid	ZNHIT6_S292Lfs*6	HLA-A32:01	RTADHILEM	0.9969	0.9655	0.0045	101.5	0.1754	4.17	1/248	1/7086
INDEL	Thyroid	ZNHIT6_S292Lfs*6	HLA-B15:01	RTADHILEM	0.999	0.9467	0.051	150	0.735	4.17	1/248	1/7086
INDEL	Thyroid	ZNHIT6_S292Lfs*6	HLA-C03:03	RTADHILEM	0.9971	0.9902	0.0037	20.3	0.0869	4.17	1/248	1/7086
INDEL	Thyroid	ZNHIT6_S292Lfs*6	HLA-A32:01	RTADHILEMLF	0.999	0.9684	0.0539	460.2	0.7095	4.17	1/248	1/7086
INDEL	Thyroid	CERKL_M324Kfs*102	HLA-B35:01	TATLHIIKY	0.9949	0.7025	0.0096	90.2	0.297	2.49	1/248	1/7086
INDEL	Thyroid	CERKL_M324Kfs*102	HLA-A02:01	GMYSWSTSA	0.981	0.5968	0.1994	21.1	0.2884	2.49	1/248	1/7086
INDEL	Thyroid	CERKL_M324Kfs*102	HLA-B35:01	APSAPLASF	0.9959	0.7339	0.033	82.6	0.279	2.49	1/248	1/7086
INDEL	Thyroid	CERKL_M324Kfs*102	HLA-B35:01	APLASFFAL	0.9718	0.9303	0.2868	65.3	0.2359	2.49	1/248	1/7086
INDEL	Thyroid	CERKL_M324Kfs*102	HLA-B35:01	FALGSQPCL	0.9014	0.9612	0.0919	269.6	0.6024	2.49	1/248	1/7086
INDEL	Thyroid	CERKL_M324Kfs*102	HLA-B35:01	CPLTNGEIL	0.9746	0.7636	1.2862	348.9	0.6979	2.49	1/248	1/7086
INDEL	Thyroid	CERKL_M324Kfs*102	HLA-A02:01	LLLRHWQNL	0.9386	0.7891	1.1763	234.9	1.8207	2.49	1/248	1/7086
INDEL	Thyroid	CERKL_M324Kfs*102	HLA-A02:01	LLWGMYSWST	0.9502	0.515	1.975	54.1	0.6717	2.49	1/248	1/7086
INDEL	Thyroid	AP3M2_V107Rfs*24	HLA-C07:02	RYWKRCLTM	0.7711	0.9528	0.6594	84.4	0.0446	4.29	1/248	1/7086
INDEL	Thyroid	AP3M2_V107Rfs*24	HLA-C07:02	FHWLPSRTF	0.6908	0.9875	0.1055	199.6	0.1293	4.29	1/248	1/7086
INDEL	Thyroid	AP3M2_V107Rfs*24	HLA-C07:02	VRYWKRCLTM	0.9698	0.9252	0.8247	173.9	0.109	4.29	1/248	1/7086
INDEL	Thyroid	MACF1_S3963Afs*50	HLA-C03:04	YAVRPVSSI	0.9992	0.9742	0.0166	5.1	0.0184	11.76	1/248	1/7086
INDEL	Thyroid	PPT1_V88Lfs*17	HLA-C03:04	FLNLNKSQF	0.9647	0.9847	1.403	374.5	0.8241	71.84	1/248	1/7086
INDEL	Thyroid	TESK2_G30Tfs*35	HLA-C03:04	LAIFVSSSY	0.9738	0.9753	0.4865	341.8	0.7796	3.85	1/248	1/7086
INDEL	Thyroid	TESK2_G30Tfs*35	HLA-C03:04	FVSSSYKCL	0.9746	0.9826	0.5181	160.2	0.4872	3.85	1/248	1/7086
INDEL	Thyroid	TESK2_G30Tfs*35	HLA-A24:02	SYKCLFQTDAF	0.995	0.5493	0.8065	87.8	0.1901	3.85	1/248	1/7086
INDEL	Thyroid	USP33_K100Mfs*7	HLA-C03:04	STIHSQETM	0.9993	0.97	0.7081	199.9	0.5633	13.29	1/248	2/7086
INDEL	Thyroid	LRRC8D_N572Rfs*14	HLA-C03:04	YLIGNLRNL	0.9924	0.9761	0.0344	65.9	0.2676	11.6	1/248	1/7086
INDEL	Thyroid	DPYD_M166Tfs*11	HLA-C03:04	YSCFSNIVM	0.9973	0.9874	0.5454	81.8	0.317	12.34	1/248	1/7086
INDEL	Thyroid	DPYD_G138Vfs*29	HLA-C03:04	VVDAIYMPL	0.9937	0.9865	0.5941	104.4	0.373	12.34	1/248	1/7086
INDEL	Thyroid	PPP2R5A_M126Ifs*9	HLA-C03:04	SAYSDIVKI	0.999	0.9778	0.0226	63.4	0.2584	36.6	1/248	1/7086
INDEL	Thyroid	CENPF_P155Ffs*9	HLA-C03:04	KIFTTPLTF	0.8328	0.9841	0.0686	188	0.5411	1.43	1/248	1/7086
INDEL	Thyroid	CENPF_P155Ffs*9	HLA-C03:04	FTTPLTFHL	0.9993	0.9889	0.1255	40.7	0.181	1.43	1/248	1/7086
INDEL	Thyroid	EML4_N581_D582insYT	HLA-C03:04	YTDGFQIEV	0.9542	0.9927	0.0344	384.3	0.8381	13.18	1/248	1/7086
INDEL	Thyroid	MSH2_I906Hfs*3	HLA-C03:04	MSEENITHL	0.9993	0.9876	0.2054	86.8	0.3307	14.79	1/248	1/7086
INDEL	Thyroid	RTN4_V665_S666insES	HLA-C03:04	EAMSVESSL	0.9994	0.9842	0.5454	122.9	0.4127	59.46	1/248	1/7086
INDEL	Thyroid	TMEM131_V542_L543insVL	HLA-A02:07	FLDYFVVLL	0.9934	0.7467	0.0762	71.3	0.0097	6.63	1/248	1/7086
INDEL	Thyroid	TMEM131_V542_L543insVL	HLA-C03:04	FVVLLPPKI	0.8593	0.9901	0.9152	489.6	0.9985	6.63	1/248	1/7086
INDEL	Thyroid	ZEB2_A891_K892insE	HLA-C03:04	FSAEKPLYTAL	1	0.9908	0.2793	341.5	0.7793	1.34	1/248	1/7086
INDEL	Thyroid	LY75_W1016Cfs*11	HLA-C03:04	CAYSGLPM	0.9997	0.9881	0.8813	165.6	0.4965	10.28	1/248	1/7086
INDEL	Thyroid	CIR1_T139Nfs*34	HLA-C03:04	TQIENVLCL	0.9893	0.9809	0.1448	314.6	0.7436	32.37	1/248	1/7086
INDEL	Thyroid	GLB1L_V358Lfs*53	HLA-A24:02	YQGSSFGTF	0.8395	0.6739	1.4522	233.1	0.404	28.58	1/248	1/7086
INDEL	Thyroid	GLB1L_V358Lfs*53	HLA-C03:04	WAFTGFPRL	0.9995	0.9943	0.3639	13.2	0.0487	28.58	1/248	1/7086
INDEL	Thyroid	GLB1L_V358Lfs*53	HLA-C03:04	FTGFPRLAL	0.999	0.9941	0.0671	58.5	0.2415	28.58	1/248	1/7086
INDEL	Thyroid	GLB1L_V358Lfs*53	HLA-A24:02	ALPPWAHSF	0.9954	0.7294	0.0441	85.3	0.1851	28.58	1/248	1/7086
INDEL	Thyroid	GLB1L_V358Lfs*53	HLA-C03:04	HSFNLANDL	0.9957	0.9939	0.5077	170.7	0.5064	28.58	1/248	1/7086
INDEL	Thyroid	GLB1L_V358Lfs*53	HLA-A24:02	EYQGSSFGTF	0.9951	0.7292	0.2913	40.8	0.0905	28.58	1/248	1/7086
INDEL	Thyroid	GLB1L_V358Lfs*53	HLA-A24:02	SAPGWAFTGF	0.9857	0.6792	1.8524	347.9	0.5288	28.58	1/248	1/7086
INDEL	Thyroid	GLB1L_V358Lfs*53	HLA-A24:02	LALPPWAHSF	0.9929	0.7275	0.4563	389.6	0.5648	28.58	1/248	1/7086
INDEL	Thyroid	GLB1L_V358Lfs*53	HLA-C03:04	WAFTGFPRLAL	0.9999	0.9913	0.6333	307.1	0.7332	28.58	1/248	1/7086
INDEL	Thyroid	FGD5_S891Lfs*38	HLA-C03:04	SIRGDAPAL	0.9849	0.9724	0.1435	400	0.8598	4.87	1/248	1/7086
INDEL	Thyroid	LARS2_A138_A139insLSF	HLA-C03:04	FGLPAENAL	0.9987	0.9913	0.2352	18.2	0.0765	5.91	1/248	1/7086
INDEL	Thyroid	LARS2_A138_A139insLSF	HLA-C03:04	LPAENALSF	0.9546	0.9846	0.4614	188.1	0.5413	5.91	1/248	1/7086
INDEL	Thyroid	LARS2_A138_A139insLSF	HLA-C03:04	LSFAVERNL	0.9982	0.9923	0.7438	252.8	0.653	5.91	1/248	1/7086
INDEL	Thyroid	DENND6A_P346_P347insRKL	HLA-A02:07	KLPSVILGV	0.9947	0.6126	0.0017	186.1	0.0349	7.48	1/248	1/7086
INDEL	Thyroid	ADAMTS9_V836delinsGLSSIGI	HLA-C03:04	YSGSETAGL	0.9748	0.9809	0.8698	297.2	0.719	7.31	1/248	1/7086
INDEL	Thyroid	NFXL1_G665Vfs*27	HLA-C03:04	YSCKRVCVL	0.9962	0.9755	0.3898	414.1	0.8786	3.3	1/248	1/7086
INDEL	Thyroid	THAP9_C717Lfs*24	HLA-C03:04	FVSGLQIIV	0.9054	0.9737	0.5637	431.3	0.901	2.6	1/248	1/7086
INDEL	Thyroid	THAP9_C717Lfs*24	HLA-A24:02	MLQTSYQLF	0.9774	0.5023	0.637	71.3	0.1562	2.6	1/248	1/7086
INDEL	Thyroid	NUDT9_H324delinsQVFLFKII	HLA-A02:07	KLYASQVFL	0.9951	0.6357	0.0267	457.2	0.0845	24.49	1/248	1/7086
INDEL	Thyroid	NUDT9_H324delinsQVFLFKII	HLA-C03:04	FLFKIISQF	0.9791	0.9575	0.4232	494.3	1.004	24.49	1/248	1/7086
INDEL	Thyroid	RAP1GDS1_E405Ffs*11	HLA-C03:04	KMLSAGVTF	0.665	0.996	1.5067	427.2	0.8956	14.71	1/248	1/7086
INDEL	Thyroid	RAP1GDS1_E405Ffs*11	HLA-A02:07	MLSAGVTFL	0.986	0.6123	0.2526	415.6	0.0781	14.71	1/248	1/7086
INDEL	Thyroid	RAP1GDS1_E405Ffs*11	HLA-C03:04	MLSAGVTFL	0.9189	0.984	0.9103	143.2	0.4558	14.71	1/248	1/7086
INDEL	Thyroid	RAP1GDS1_E405Ffs*11	HLA-A02:07	FLSRGSFEI	0.9953	0.6459	0.2213	156.7	0.0261	14.71	1/248	1/7086
INDEL	Thyroid	TBCK_I486Vfs*48	HLA-C03:04	LGVEGAVFM	0.9968	0.9958	0.7438	160.2	0.4873	2.82	1/248	1/7086
INDEL	Thyroid	TBCK_I486Vfs*48	HLA-C03:04	GAVFMPSTM	0.9986	0.9843	0.3987	51.2	0.2156	2.82	1/248	1/7086
INDEL	Thyroid	TBCK_I486Vfs*48	HLA-C03:04	VFMPSTMQL	0.9694	0.9899	0.0671	201.6	0.5663	2.82	1/248	1/7086
INDEL	Thyroid	TBCK_I486Vfs*48	HLA-A02:07	FMPSTMQLI	0.9882	0.5238	0.1963	215.9	0.0425	2.82	1/248	1/7086
INDEL	Thyroid	TBCK_I486Vfs*48	HLA-C03:04	STMQLIKTL	0.9989	0.9521	0.2896	83.2	0.321	2.82	1/248	1/7086
INDEL	Thyroid	TBCK_A485Vfs*50	HLA-C03:04	LGVEGVSLF	0.9969	0.9957	0.9971	315.7	0.7452	2.82	1/248	1/7086
INDEL	Thyroid	TBCK_A485Vfs*50	HLA-C03:04	VSLFMPSTM	0.9989	0.9912	0.5723	36.6	0.1662	2.82	1/248	1/7086
INDEL	Thyroid	TBCK_A485Vfs*50	HLA-C03:04	LFMPSTMQL	0.9771	0.9871	0.1317	126.1	0.42	2.82	1/248	1/7086
INDEL	Thyroid	TBCK_A485Vfs*50	HLA-A02:07	FMPSTMQLI	0.9882	0.5238	0.1963	215.9	0.0425	2.82	1/248	1/7086
INDEL	Thyroid	TBCK_A485Vfs*50	HLA-C03:04	STMQLIKTL	0.9989	0.9521	0.2896	83.2	0.321	2.82	1/248	1/7086
INDEL	Thyroid	MFSD8_T254Kfs*30	HLA-A24:02	RLLLWPSMF	0.9686	0.6135	0.4153	263.7	0.4422	5.02	1/248	1/7086
INDEL	Thyroid	EDNRA_F40_R41insFS	HLA-C03:04	HVDDFTTFF	0.9779	0.9651	0.0282	434.7	0.9071	3.43	1/248	1/7086
INDEL	Thyroid	EDNRA_F40_R41insFS	HLA-C03:04	FSRGTELSF	0.9951	0.9931	0.3495	75.2	0.2979	3.43	1/248	1/7086
INDEL	Thyroid	NR3C2_K601Rfs*19	HLA-C03:04	YVWCVGMRL	0.9967	0.9794	1.3416	198.2	0.5601	3.86	1/248	1/7086
INDEL	Thyroid	KIAA0922_G517Dfs*54	HLA-A02:07	FLWINLPGM	0.9726	0.6512	0.0995	214.1	0.0421	2.76	1/248	1/7086
INDEL	Thyroid	KIAA0922_G517Dfs*54	HLA-C03:04	FLWINLPGM	0.6366	0.9941	1.3273	316.8	0.7467	2.76	1/248	1/7086
INDEL	Thyroid	KIAA0922_G517Dfs*54	HLA-A24:02	LWINLPGMW	0.9838	0.6327	0.8108	196.2	0.3575	2.76	1/248	1/7086
INDEL	Thyroid	OSMR_Y168Lfs*32	HLA-C03:04	FMENNLIHM	0.9958	0.9872	0.6137	122.5	0.4119	4.68	1/248	1/7086
INDEL	Thyroid	ZFYVE16_I595Tfs*7	HLA-C03:04	HGINITFTF	0.9847	0.974	0.721	442.6	0.9208	4.72	1/248	1/7086
INDEL	Thyroid	APC_S1863delinsNLC	HLA-C03:04	FSRNDSLNL	0.999	0.9882	0.5399	43.1	0.1883	2.39	1/248	2/7086
INDEL	Thyroid	ZNF311_E156_I157insNFITLT	HLA-C03:04	SQQENFITL	0.9923	0.9731	0.4883	359.4	0.8017	1.31	1/248	1/7086
INDEL	Thyroid	FAM83B_S804Afs*6	HLA-A24:02	FYRLCSSATL	0.9771	0.5552	1.5977	182.3	0.338	1.33	1/248	1/7086
INDEL	Thyroid	COL12A1_L2210Gfs*62	HLA-C03:04	MVTSPGSHL	0.9978	0.9839	0.3624	59.5	0.2448	2.89	1/248	1/7086
INDEL	Thyroid	COL12A1_L2210Gfs*62	HLA-C03:04	VTSPGSHLL	0.9994	0.992	0.1793	119.2	0.4041	2.89	1/248	1/7086
INDEL	Thyroid	COL12A1_L2210Gfs*62	HLA-C03:04	SAWIRNQSL	0.9992	0.988	0.037	56.2	0.2338	2.89	1/248	1/7086
INDEL	Thyroid	COL12A1_L2210Gfs*62	HLA-C03:04	YSAWIRNQSL	0.9993	0.9846	0.2165	222	0.6013	2.89	1/248	1/7086
INDEL	Thyroid	DOPEY1_P255_F256insKV	HLA-C03:04	FCFPKVFHM	0.9793	0.9942	0.1242	294.2	0.7146	4.23	1/248	1/7086
INDEL	Thyroid	PREP_N522Kfs*17	HLA-C03:04	LAKPNKTAL	0.9985	0.9702	0.2183	36.3	0.1653	15.14	1/248	1/7086
INDEL	Thyroid	PREP_N522Kfs*17	HLA-C03:04	TALMTFSVL	0.9991	0.9858	0.4659	11.6	0.0405	15.14	1/248	1/7086
INDEL	Thyroid	PREP_N522Kfs*17	HLA-C03:04	MTFSVLLSI	0.951	0.9931	0.766	58.8	0.2425	15.14	1/248	1/7086
INDEL	Thyroid	REV3L_T1655Rfs*31	HLA-C03:04	FPLDFVAFI	0.9517	0.9967	1.3988	325	0.7578	2.58	1/248	1/7086
INDEL	Thyroid	REV3L_T1655Rfs*31	HLA-C03:04	VAFILEVSL	0.9995	0.9936	0.3698	43.7	0.1901	2.58	1/248	1/7086
INDEL	Thyroid	RSPH4A_P474Ifs*31	HLA-A02:07	FLFHLSQEM	0.996	0.6265	0.0658	382.7	0.0738	1.11	1/248	1/7086
INDEL	Thyroid	RSPH4A_P474Ifs*31	HLA-C03:04	FLFHLSQEM	0.998	0.9943	0.1196	19.6	0.0838	1.11	1/248	1/7086
INDEL	Thyroid	RSPH4A_P474Ifs*31	HLA-B40:01	FQQEPTSVL	0.8262	0.6289	0.8444	496.6	0.6885	1.11	1/248	1/7086
INDEL	Thyroid	RSPH4A_P474Ifs*31	HLA-C03:04	FQQEPTSVL	0.9923	0.9962	0.1566	19.5	0.083	1.11	1/248	1/7086
INDEL	Thyroid	NCOA7_F724Yfs*15	HLA-A24:02	LYFHTLWWW	0.9854	0.7709	0.7286	232.2	0.4028	5.79	1/248	1/7086
INDEL	Thyroid	NCOA7_F724Yfs*15	HLA-A24:02	GYLYFHTLWW	0.9754	0.5818	1.2078	197.6	0.3595	5.79	1/248	1/7086
INDEL	Thyroid	PSMA2_T107Kfs*8	HLA-A24:02	VYQEPIPKLSW	0.9999	0.6949	0.0154	230.3	0.4003	4.91	1/248	1/7086
INDEL	Thyroid	CCDC132_T718_S719insKLELKLKY	HLA-C03:04	LVVLTKLEL	0.9987	0.9957	0.8108	218.3	0.595	3.41	1/248	1/7086
INDEL	Thyroid	CCDC132_T718_S719insKLELKLKY	HLA-C03:04	YSGDTLYGL	0.993	0.9566	0.9357	344	0.7824	3.41	1/248	1/7086
INDEL	Thyroid	DOCK5_V607Sfs*34	HLA-C03:04	IALKTAFRL	0.9978	0.9465	0.897	114.1	0.3934	2.08	1/248	1/7086
INDEL	Thyroid	KAT6A_S670Ifs*32	HLA-A02:07	YLIWVVFPT	0.9796	0.702	0.6692	400.4	0.0762	5.73	1/248	1/7086
INDEL	Thyroid	KAT6A_S670Ifs*32	HLA-A24:02	IWVVFPTWHI	0.9535	0.6928	1.9828	173.5	0.3247	5.73	1/248	1/7086
INDEL	Thyroid	KAT6A_S670Ifs*32	HLA-A24:02	RYLIWVVFPTW	0.9943	0.8595	1.6471	92.8	0.1996	5.73	1/248	1/7086
INDEL	Thyroid	PABPC1_E328Vfs*29	HLA-C03:04	VVAAKGLVL	0.9983	0.992	0.2396	50.1	0.2114	261.64	1/248	1/7086
INDEL	Thyroid	KIAA0020_T16_A17insILILIL	HLA-C03:04	KSTKTILIL	0.9912	0.9702	0.1242	488.5	0.9967	10.66	1/248	1/7086
INDEL	Thyroid	KIAA2026_V1292Afs*53	HLA-C03:04	FSFHFCSSA	0.9418	0.9898	1.8202	145.3	0.4597	7.03	1/248	1/7086
INDEL	Thyroid	MRPL50_S81Mfs*6	HLA-C03:04	YVKEVFGSM	0.9906	0.9878	0.3235	167.6	0.4999	10.94	1/248	1/7086
INDEL	Thyroid	C5_S772Rfs*21	HLA-A24:02	SYFPERLVV	0.9853	0.6106	0.0643	343.5	0.5248	1.73	1/248	1/7086
INDEL	Thyroid	SETX_I1878Tfs*30	HLA-C03:04	CTIITHNSL	0.9966	0.9602	0.7304	232.5	0.6196	11.49	1/248	1/7086
INDEL	Thyroid	NET1_N60Qfs*15	HLA-C03:04	FTFLTPGPQL	0.9981	0.9857	0.4078	144.5	0.4583	13.8	1/248	1/7086
INDEL	Thyroid	SKIDA1_G539Vfs*8	HLA-C03:04	ASLVGVVSL	0.9997	0.9956	0.3041	121.7	0.41	1.27	1/248	1/7086
INDEL	Thyroid	KIF11_T222_T223insSIRLVKTH	HLA-C03:04	KTHTAATLM	0.9421	0.9797	1.2367	260.6	0.6651	3.24	1/248	1/7086
INDEL	Thyroid	MS4A4A_N166Hfs*20	HLA-C03:04	YCHLSLTTM	0.9858	0.9618	0.5419	142.1	0.4535	1.23	1/248	1/7086
INDEL	Thyroid	MS4A4A_N166Hfs*20	HLA-C03:04	TMATQIIVM	0.9876	0.99	0.7726	243.3	0.6377	1.23	1/248	1/7086
INDEL	Thyroid	MS4A4A_N166Hfs*20	HLA-C03:04	YSFHHPYCHL	0.9992	0.9901	0.7399	232.2	0.6191	1.23	1/248	1/7086
INDEL	Thyroid	DLG2_L354_C355insPIYP	HLA-C03:04	YSTVNKLPI	0.9656	0.9897	1.1532	33.2	0.1518	3.04	1/248	1/7086
INDEL	Thyroid	MPZL3_S86Lfs*28	HLA-C03:04	FGIGFPGLEM	0.9999	0.99	0.3254	120.2	0.4065	18.05	1/248	1/7086
INDEL	Thyroid	KIAA1551_S667_C668insI	HLA-C03:04	SSICSMEVL	0.9995	0.9929	0.8655	68.7	0.2771	6.22	1/248	1/7086
INDEL	Thyroid	LRRK2_K2278Lfs*14	HLA-C03:04	LAIFEDLEL	0.9995	0.9929	0.1527	25.1	0.1104	32.25	1/248	1/7086
INDEL	Thyroid	ZNF10_K187Tfs*12	HLA-C03:04	TSSNVTHIL	0.9997	0.9922	0.0441	277.6	0.6902	4.84	1/248	1/7086
INDEL	Thyroid	N4BP2L2_N269delinsINKH	HLA-C03:04	FVSLLLRPI	0.9668	0.9917	1.8454	161.2	0.489	7.22	1/248	1/7086
INDEL	Thyroid	SUPT16H_D664Ffs*57	HLA-C03:04	LIYTFAQIL	0.9922	0.9811	1.0705	175.1	0.5156	20.32	1/248	1/7086
INDEL	Thyroid	SUPT16H_D664Ffs*57	HLA-C03:04	KAHWRPMSM	0.9877	0.9898	0.0835	29.9	0.1336	20.32	1/248	1/7086
INDEL	Thyroid	SUPT16H_D664Ffs*57	HLA-C03:04	MSMASASHL	0.9998	0.9947	0.4382	5.4	0.02	20.32	1/248	1/7086
INDEL	Thyroid	SUPT16H_D664Ffs*57	HLA-C03:04	SMASASHLF	0.9429	0.9922	1.9978	447	0.9286	20.32	1/248	1/7086
INDEL	Thyroid	SUPT16H_D664Ffs*57	HLA-C03:04	MSMASASHLF	0.9997	0.9927	1.5887	372.5	0.8212	20.32	1/248	1/7086
INDEL	Thyroid	BAZ1A_Y814Cfs*51	HLA-A24:02	RMYRRCTGF	0.9292	0.5652	1.7432	325	0.5072	4.2	1/248	1/7086
INDEL	Thyroid	BAZ1A_Y814Cfs*51	HLA-C03:04	FSLLFLDSL	0.9969	0.9906	0.6173	78.1	0.3065	4.2	1/248	1/7086
INDEL	Thyroid	BAZ1A_Y814Cfs*51	HLA-A24:02	MYRRCTGFSL	0.9805	0.8095	1.0192	214.6	0.3814	4.2	1/248	1/7086
INDEL	Thyroid	MBIP_P266Ifs*32	HLA-C03:04	ASLLNIFSL	0.9984	0.9887	0.5231	241	0.6338	46.85	1/248	1/7086
INDEL	Thyroid	ARID4A_K597Tfs*5	HLA-C03:04	KIYEASITL	0.9977	0.9907	0.037	18.1	0.0761	4.84	1/248	1/7086
INDEL	Thyroid	WDR89_C213Sfs*16	HLA-C03:04	WMFKPVTQF	0.9918	0.9507	1.3176	144.4	0.4581	7.27	1/248	1/7086
INDEL	Thyroid	TJP1_I292Sfs*67	HLA-C03:04	MAVSGVEM	0.9999	0.9833	0.2138	130.7	0.4301	16.46	1/248	1/7086
INDEL	Thyroid	TJP1_I292Sfs*67	HLA-C03:04	FSHWHQIIL	0.9993	0.9747	0.0073	13.4	0.05	16.46	1/248	1/7086
INDEL	Thyroid	TJP1_I292Sfs*67	HLA-C03:04	ILVDHTIGL	0.9764	0.9679	0.0109	139.1	0.4476	16.46	1/248	1/7086
INDEL	Thyroid	TJP1_I292Sfs*67	HLA-C03:04	AMAVSGVEM	0.9823	0.9874	0.8065	215.3	0.5901	16.46	1/248	1/7086
INDEL	Thyroid	TJP1_I292Sfs*67	HLA-C03:04	FLNLGLSQL	0.9907	0.9656	0.4825	110.8	0.3866	16.46	1/248	1/7086
INDEL	Thyroid	TJP1_I292Sfs*67	HLA-C03:04	QAMAVSGVEM	0.9989	0.9881	0.7081	333.6	0.7691	16.46	1/248	1/7086
INDEL	Thyroid	ZCCHC14_Y809Afs*57	HLA-C03:04	TAAAGPQTL	0.9995	0.988	0.2978	11.6	0.0408	12.93	1/248	1/7086
INDEL	Thyroid	ZCCHC14_Y809Afs*57	HLA-C03:04	LTAAAGPQTL	0.9986	0.9816	0.6996	334.1	0.7698	12.93	1/248	1/7086
INDEL	Thyroid	ZNF286A_A474Vfs*59	HLA-C03:04	SAVHLSSDI	0.9893	0.987	1.211	286.4	0.7029	1.19	1/248	1/7086
INDEL	Thyroid	KCNJ16_W85Yfs*24	HLA-C03:04	LSYNVVVDI	0.9876	0.9768	1.3344	486.4	0.9934	206.11	1/248	1/7086
INDEL	Thyroid	KCNJ16_W85Yfs*24	HLA-C03:04	HSLSSWRSI	0.9691	0.9874	1.7557	445.6	0.9262	206.11	1/248	1/7086
INDEL	Thyroid	KCNJ16_W85Yfs*24	HLA-A24:02	IWLCLLAHSL	0.935	0.593	1.276	378.8	0.5559	206.11	1/248	1/7086
INDEL	Thyroid	YES1_P309Nfs*28	HLA-C03:04	VAIKTLKNI	0.9911	0.9822	0.9495	450.3	0.9342	17.2	1/248	1/7086
INDEL	Thyroid	MAPRE2_V78Dfs*23	HLA-C03:04	YTKDGTALF	0.9938	0.9856	0.1886	125.8	0.4194	5.79	1/248	1/7086
INDEL	Thyroid	MAPRE2_V78Dfs*23	HLA-C03:04	TALFRSGLL	0.9929	0.9937	0.8884	303.2	0.7277	5.79	1/248	1/7086
INDEL	Thyroid	MAPRE2_E79Pfs*25	HLA-C03:04	TALFRSGLL	0.9929	0.9937	0.8884	303.2	0.7277	5.79	1/248	1/7086
INDEL	Thyroid	ZNF829_N390Tfs*52	HLA-C03:04	FAMREFIL	1	0.99	0.5435	346.4	0.7854	1.18	1/248	1/7086
INDEL	Thyroid	ZNF829_N390Tfs*52	HLA-C03:04	IIIKAQILL	0.9983	0.9878	0.8629	482.6	0.9875	1.18	1/248	1/7086
INDEL	Thyroid	ZNF829_N390Tfs*52	HLA-C03:04	MTVRNVERL	0.9986	0.9859	0.5038	417.8	0.8834	1.18	1/248	1/7086
INDEL	Thyroid	ZNF829_N390Tfs*52	HLA-C03:04	FAMREFILV	0.9871	0.9911	0.167	21.8	0.094	1.18	1/248	1/7086
INDEL	Thyroid	ZNF829_N390Tfs*52	HLA-A02:07	ILLDIREFTL	0.9972	0.6766	0.1098	491.2	0.0898	1.18	1/248	1/7086
INDEL	Thyroid	ZNF527_P292Vfs*23	HLA-C03:04	YSFFTQVRTL	0.9972	0.9624	1.1027	121.7	0.4101	1.07	1/248	1/7086
INDEL	Thyroid	ZNF525_N161Sfs*40	HLA-C03:04	LVGPKPIYL	0.9915	0.9735	0.0481	404.1	0.8654	1.34	1/248	1/7086
INDEL	Thyroid	ZNF544_P168_S169insRSF	HLA-C01:02	SLPRSFSTL	0.6216	0.9665	0.0201	396.1	0.0099	5.02	1/248	1/7086
INDEL	Thyroid	ZNF544_P168_S169insRSF	HLA-C03:04	RSFSTLSLL	0.9867	0.9928	0.6674	54.4	0.2273	5.02	1/248	1/7086
INDEL	Thyroid	ZNF544_P168_S169insRSF	HLA-C03:04	YSLPRSFSTL	0.9998	0.9914	0.1025	44.9	0.1935	5.02	1/248	1/7086
INDEL	Thyroid	MXRA5_I1819Mfs*80	HLA-C03:04	ISFMLKHLL	0.9974	0.9911	0.7967	223.1	0.6031	5.3	1/248	1/7086
INDEL	Thyroid	MXRA5_I1819Mfs*80	HLA-C03:04	STRAAQSSL	0.9908	0.9682	0.9357	440.4	0.9172	5.3	1/248	1/7086
INDEL	Thyroid	MXRA5_I1819Mfs*80	HLA-C03:04	LLHPNSGLL	0.9146	0.9587	0.8271	200	0.5634	5.3	1/248	1/7086
INDEL	Thyroid	STARD8_Q764Pfs*9	HLA-C03:04	MAATPGPVA	0.9906	0.9913	0.1401	110.4	0.3859	3.37	1/248	1/7086
INDEL	Thyroid	ARMCX1_E403Lfs*35	HLA-C03:04	FSYSKSLEF	0.9993	0.9913	0.0131	5.4	0.0199	18.57	1/248	1/7086
INDEL	Thyroid	ARMCX1_E403Lfs*35	HLA-C01:02	FSYSKSLEF	0.6922	0.9704	0.051	411	0.01	18.57	1/248	1/7086
INDEL	Thyroid	ARMCX1_E403Lfs*35	HLA-C03:04	YSKSLEFVL	0.9993	0.9949	0.5435	143	0.4553	18.57	1/248	1/7086
INDEL	Thyroid	ARMCX1_E403Lfs*35	HLA-A24:02	SYSKSLEFVL	0.9869	0.6172	0.7356	152.8	0.2926	18.57	1/248	1/7086
INDEL	Thyroid	DOCK11_R309_S310insISIM	HLA-C03:04	MASLERISI	0.9996	0.9901	0.4675	55.5	0.2313	8.66	1/248	1/7086
INDEL	Thyroid	DOCK11_R309_S310insISIM	HLA-C03:04	ASLERISIM	0.9996	0.9872	0.2367	128.5	0.4253	8.66	1/248	1/7086
INDEL	Thyroid	DOCK11_R309_S310insISIM	HLA-C03:04	SIMSMHPEL	0.9984	0.9891	0.3089	70.2	0.2818	8.66	1/248	1/7086
INDEL	Thyroid	DOCK11_R309_S310insISIM	HLA-C03:04	IMSMHPELM	0.9908	0.9824	1.3381	441.8	0.9195	8.66	1/248	1/7086
INDEL	Thyroid	DOCK11_R309_S310insISIM	HLA-C03:04	MASLERISIM	0.9997	0.9904	1.9682	471	0.9686	8.66	1/248	1/7086
INDEL	Thyroid	DNAH7_E2144_F2145insSLLWFLL	HLA-B18:01	DESLLWFLL	0.9617	0.9777	1.202	62.3	0.0429	1.25	1/248	1/7086
INDEL	Thyroid	DNAH7_E2144_F2145insSLLWFLL	HLA-A02:01	SLLWFLLFL	0.8832	0.7033	0.1977	30.1	0.4024	1.25	1/248	1/7086
INDEL	Thyroid	DNAH7_E2144_F2145insSLLWFLL	HLA-A02:01	FLLFLDLTT	0.9706	0.6739	0.7881	27.8	0.3762	1.25	1/248	1/7086
INDEL	Thyroid	DNAH7_E2144_F2145insSLLWFLL	HLA-B44:03	DESLLWFLLF	0.9673	0.9833	1.7785	123.3	0.1434	1.25	1/248	1/7086
INDEL	Thyroid	DNAH7_E2144_F2145insSLLWFLL	HLA-B18:01	DESLLWFLLF	0.9741	0.9626	1.8911	47.8	0.0342	1.25	1/248	1/7086
INDEL	Thyroid	STAU2_Q446Hfs*27	HLA-C16:01	MNHSYLQAL	0.9559	0.9762	0.7356	233.6	0.7612	6.25	1/248	1/7086
INDEL	Thyroid	STAU2_Q446Hfs*27	HLA-C16:01	SVYLPHRIV	0.7446	0.959	0.651	347.7	1.0472	6.25	1/248	1/7086
INDEL	Thyroid	STAU2_Q446Hfs*27	HLA-A02:01	YLPHRIVQL	0.9892	0.8214	0.0014	15.9	0.1971	6.25	1/248	1/7086
INDEL	Thyroid	STAU2_Q446Hfs*27	HLA-C16:01	YLPHRIVQL	0.9891	0.9879	0.0084	196.5	0.6522	6.25	1/248	1/7086
INDEL	Thyroid	STAU2_Q446Hfs*27	HLA-A02:01	YLQALSSVYL	0.9918	0.6028	0.388	13	0.1565	6.25	1/248	1/7086
INDEL	Thyroid	OLFML1_E121Dfs*12	HLA-B44:03	SEDKTLADIF	0.9933	0.8498	0.4563	294.5	0.2964	2	1/248	1/7086
INDEL	Thyroid	OLFML1_E121Dfs*12	HLA-A02:01	TLADIFFENVA	0.9976	0.5042	0.4967	48.8	0.6171	2	1/248	1/7086
INDEL	Thyroid	HSD17B12_M278Sfs*65	HLA-A02:01	YLIHALSGL	0.9894	0.521	0.0808	5.1	0.0359	25.51	1/248	1/7086
INDEL	Thyroid	HSD17B12_M278Sfs*65	HLA-C16:01	YLIHALSGL	0.8129	0.9864	1.2398	297.3	0.9348	25.51	1/248	1/7086
INDEL	Thyroid	HSD17B12_M278Sfs*65	HLA-C16:01	HALSGLDNL	0.8259	0.991	0.5471	207.3	0.6829	25.51	1/248	1/7086
INDEL	Thyroid	HSD17B12_M278Sfs*65	HLA-B18:01	HEYEQVYTG	0.912	0.8704	0.296	239.8	0.1602	25.51	1/248	1/7086
INDEL	Thyroid	HSD17B12_M278Sfs*65	HLA-B18:01	YEQVYTGSL	0.9499	0.7931	0.8492	232.5	0.1544	25.51	1/248	1/7086
INDEL	Thyroid	HSD17B12_M278Sfs*65	HLA-B18:01	FENSHEYEQVY	0.9763	0.8884	0.3495	203.5	0.1302	25.51	1/248	1/7086
INDEL	Thyroid	FMR1_G491Yfs*8	HLA-C16:01	RGPGYTSYL	0.5605	0.9881	0.3974	158.5	0.5387	16.64	1/248	1/7086
INDEL	Thyroid	UNG_G93Wfs*23	HLA-C07:01	ARNVPVWAL	0.9974	0.7828	0.0523	254.7	0.0926	18.55	1/248	1/7086
INDEL	Thyroid	RSPH6A_P142Sfs*17	HLA-B35:01	QPLGPVQPL	0.9369	0.9642	0.7473	344.9	0.6937	1.78	1/248	1/7086
INDEL	Thyroid	RSPH6A_P142Sfs*17	HLA-B35:01	QPLPDRPVL	0.8674	0.9852	0.0315	496.4	0.8769	1.78	1/248	1/7086
INDEL	Thyroid	HP1BP3_K130Rfs*16	HLA-C12:03	KQFLPGLPF	0.9306	0.9878	0.8813	391.9	1.3215	89.19	1/248	1/7086
INDEL	Thyroid	CTPS1_T110Nfs*29	HLA-B35:01	YTCPSCPSY	0.963	0.8086	0.4916	174.3	0.4519	7.57	1/248	1/7086
INDEL	Thyroid	USP24_E925_R926insK	HLA-C12:03	VIIEKRLLL	0.9969	0.9817	0.0948	253.4	0.9691	14.45	1/248	1/7086
INDEL	Thyroid	SLC16A4_W306Cfs*31	HLA-C12:03	YIFTCKIKL	0.978	0.9756	0.6314	184.1	0.7695	21.47	1/248	1/7086
INDEL	Thyroid	SLC16A4_W306Cfs*31	HLA-C12:03	FTCKIKLVF	0.7798	0.9666	0.184	200.3	0.8244	21.47	1/248	1/7086
INDEL	Thyroid	SLC16A4_W306Cfs*31	HLA-C12:03	FSPQSVSIL	0.9966	0.9506	0.451	50.3	0.2219	21.47	1/248	1/7086
INDEL	Thyroid	SLC16A4_W306Cfs*31	HLA-B35:01	QSVSILHPY	0.983	0.8562	0.2089	54.4	0.2085	21.47	1/248	1/7086
INDEL	Thyroid	SLC16A4_W306Cfs*31	HLA-C12:03	QSVSILHPY	0.5402	0.9352	0.2604	197	0.8137	21.47	1/248	1/7086
INDEL	Thyroid	SLC16A4_W306Cfs*31	HLA-C12:03	SVSILHPYL	0.7234	0.9479	0.6154	321.4	1.1435	21.47	1/248	1/7086
INDEL	Thyroid	SLC16A4_W306Cfs*31	HLA-C12:03	LVFSPQSVSI	0.9981	0.9542	1.7612	457.8	1.4622	21.47	1/248	1/7086
INDEL	Thyroid	SLC16A4_W306Cfs*31	HLA-B35:01	SPQSVSILHPY	0.9891	0.5825	0.2526	131.7	0.3784	21.47	1/248	1/7086
INDEL	Thyroid	CEP350_D1222delinsADSQY	HLA-B35:01	LSVKADSQY	0.9442	0.7125	0.8951	284.3	0.6221	9.77	1/248	1/7086
INDEL	Thyroid	CEP350_D1222delinsADSQY	HLA-C12:03	SVKADSQYF	0.9303	0.8968	0.1704	442.5	1.4295	9.77	1/248	1/7086
INDEL	Thyroid	HMCN1_Q1794_A1795delinsH	HLA-B35:01	HQVSNTGLY	0.8143	0.6523	1.1952	392.7	0.7555	1.62	1/248	1/7086
INDEL	Thyroid	HMCN1_Q1794_A1795delinsH	HLA-C12:03	IAHQVSNTGL	0.9925	0.9607	0.6929	481	1.5099	1.62	1/248	1/7086
INDEL	Thyroid	MBOAT2_L63_G64insKV	HLA-C12:03	HVVATLLKV	0.7148	0.9717	0.5058	254.1	0.9707	12.99	1/248	1/7086
INDEL	Thyroid	ITSN2_Q802Hfs*21	HLA-B35:01	WLYGSFHTM	0.873	0.8797	1.6177	183.5	0.4667	37.12	1/248	1/7086
INDEL	Thyroid	ITSN2_Q802Hfs*21	HLA-C12:03	WLYGSFHTM	0.9653	0.9849	0.4646	27.8	0.1099	37.12	1/248	1/7086
INDEL	Thyroid	ITSN2_Q802Hfs*21	HLA-C12:03	HTMRKFWLV	0.5311	0.9817	0.637	342.8	1.1962	37.12	1/248	1/7086
INDEL	Thyroid	C2orf16_K1274Nfs*10	HLA-B18:01	NENLLWKY	0.9992	0.5903	0.0631	76.6	0.0532	1.71	1/248	1/7086
INDEL	Thyroid	MSH2_L805Hfs*11	HLA-C12:03	TAHKMWSPL	0.9472	0.9713	0.7014	79.5	0.3685	16.92	1/248	1/7086
INDEL	Thyroid	GPD2_C309Nfs*27	HLA-B35:01	DAAAINLTL	0.9632	0.8168	0.0794	128.3	0.3728	21.09	1/248	1/7086
INDEL	Thyroid	GPD2_C309Nfs*27	HLA-C12:03	DAAAINLTL	0.7954	0.9599	0.1025	470.1	1.4876	21.09	1/248	1/7086
INDEL	Thyroid	GPD2_C309Nfs*27	HLA-C12:03	AAINLTLPA	0.9917	0.9704	0.6949	167.1	0.7055	21.09	1/248	1/7086
INDEL	Thyroid	GPD2_C309Nfs*27	HLA-B35:01	LPAKCWCPY	0.9956	0.7348	0.4232	4.7	0.014	21.09	1/248	1/7086
INDEL	Thyroid	GPD2_C309Nfs*27	HLA-B35:01	CPYCDAWLL	0.95	0.9603	1.1086	125.6	0.3683	21.09	1/248	1/7086
INDEL	Thyroid	XRCC5_T303delinsNLIHS	HLA-B18:01	DENLIHSEV	0.9367	0.565	0.2039	325.3	0.2113	116.83	1/248	1/7086
INDEL	Thyroid	GOLGA4_V1715delinsGFLYL	HLA-C12:03	SAKNGFLYL	0.989	0.9885	0.0539	41.2	0.1775	27.03	1/248	1/7086
INDEL	Thyroid	GOLGA4_V1715delinsGFLYL	HLA-B35:01	NGFLYLAAY	0.9431	0.8675	0.9787	152.1	0.4126	27.03	1/248	1/7086
INDEL	Thyroid	PTPRG_S1183_V1184insFKDII	HLA-C12:03	SSFKDIIVV	0.9797	0.9714	0.0932	42.7	0.1843	40.87	1/248	1/7086
INDEL	Thyroid	STX19_P125Hfs*13	HLA-B18:01	VENGHIIY	0.9959	0.7996	0.2573	325.7	0.2115	1.08	1/248	1/7086
INDEL	Thyroid	STX19_P125Hfs*13	HLA-B35:01	EVENGHIIY	0.7202	0.6918	0.7726	228.9	0.5402	1.08	1/248	1/7086
INDEL	Thyroid	STX19_P125Hfs*13	HLA-B18:01	SEVENGHIIY	0.9504	0.8068	0.0412	123.7	0.0856	1.08	1/248	1/7086
INDEL	Thyroid	STX19_P125Hfs*13	HLA-B18:01	VENGHIIYIF	0.9889	0.7406	0.2138	200.4	0.1274	1.08	1/248	1/7086
INDEL	Thyroid	PARP9_C821Wfs*36	HLA-C12:03	LVHPGICTV	0.9724	0.9845	0.0558	17.6	0.059	24.27	1/248	1/7086
INDEL	Thyroid	PARP9_C821Wfs*36	HLA-B18:01	NETLCTASL	0.9172	0.8369	0.8149	165.1	0.1023	24.27	1/248	1/7086
INDEL	Thyroid	CRMP1_P515_A516insFP	HLA-C12:03	ATPKYATPF	0.6672	0.9809	0.5328	393.1	1.324	10.09	1/248	1/7086
INDEL	Thyroid	CRMP1_P515_A516insFP	HLA-C12:03	YATPFPAPS	0.9224	0.9856	1.0474	445.9	1.4369	10.09	1/248	1/7086
INDEL	Thyroid	CRMP1_P515_A516insFP	HLA-B35:01	FPAPSAKSS	0.9325	0.9241	1.0655	443	0.8161	10.09	1/248	1/7086
INDEL	Thyroid	CRMP1_P515_A516insFP	HLA-A03:01	ATPFPAPSAK	0.9941	0.5648	0.3398	32	0.1079	10.09	1/248	1/7086
INDEL	Thyroid	ATP10D_S1371_G1372insLEL	HLA-C12:03	QSAGKSLEL	0.9992	0.9894	0.167	245.2	0.9497	7.88	1/248	1/7086
INDEL	Thyroid	ATP10D_S1371_G1372insLEL	HLA-C12:03	YANQSAGKSL	0.9967	0.9851	0.5038	268.8	1.005	7.88	1/248	1/7086
INDEL	Thyroid	GUCY1B3_F217Lfs*11	HLA-C12:03	YTFCKALL	0.9965	0.9581	1.1446	398.4	1.3358	9.64	1/248	1/7086
INDEL	Thyroid	GCNT4_H10Pfs*41	HLA-B35:01	TAESFHPVF	0.992	0.915	0.3495	93.3	0.3042	2.68	1/248	1/7086
INDEL	Thyroid	GCNT4_H10Pfs*41	HLA-C12:03	SFHPVFNPM	0.7096	0.9735	0.7329	278.9	1.033	2.68	1/248	1/7086
INDEL	Thyroid	GCNT4_H10Pfs*41	HLA-B35:01	HPVFNPMAA	0.9569	0.8323	0.0441	50.1	0.1948	2.68	1/248	1/7086
INDEL	Thyroid	GCNT4_H10Pfs*41	HLA-C12:03	VFNPMAALF	0.6587	0.9582	0.0995	424	1.3897	2.68	1/248	1/7086
INDEL	Thyroid	GCNT4_H10Pfs*41	HLA-B35:01	HPVFNPMAAL	0.9849	0.8035	0.3009	133.6	0.3816	2.68	1/248	1/7086
INDEL	Thyroid	GCNT4_H10Pfs*41	HLA-B35:01	YPTAESFHPVF	0.9997	0.8017	0.5779	37.8	0.147	2.68	1/248	1/7086
INDEL	Thyroid	GCNT4_H10Pfs*41	HLA-B35:01	HPVFNPMAALF	0.9995	0.722	0.2573	81.3	0.2758	2.68	1/248	1/7086
INDEL	Thyroid	CEP120_E829Ifs*29	HLA-C12:03	KVIAKHTNL	0.9791	0.9538	0.5296	204.1	0.8364	10.39	1/248	1/7086
INDEL	Thyroid	CEP120_E829Ifs*29	HLA-C12:03	ESWNLQLSL	0.7984	0.9867	1.4215	365.8	1.2578	10.39	1/248	1/7086
INDEL	Thyroid	ZSCAN16_S252Rfs*40	HLA-B35:01	FSHSSDLRM	0.83	0.6907	0.5686	278.5	0.6145	11.53	1/248	1/7086
INDEL	Thyroid	ZSCAN16_S252Rfs*40	HLA-C12:03	FSHSSDLRM	0.9143	0.9526	0.1014	46.3	0.1993	11.53	1/248	1/7086
INDEL	Thyroid	ZSCAN16_S252Rfs*40	HLA-C12:03	RSPINVMSV	0.832	0.9899	0.3787	190.5	0.7922	11.53	1/248	1/7086
INDEL	Thyroid	ZSCAN16_S252Rfs*40	HLA-C12:03	FSAHISLDI	0.9407	0.9635	0.5904	49.8	0.219	11.53	1/248	1/7086
INDEL	Thyroid	ZSCAN16_S252Rfs*40	HLA-C12:03	SAHISLDII	0.7949	0.9601	0.8127	287.5	1.0559	11.53	1/248	1/7086
INDEL	Thyroid	ZSCAN16_S252Rfs*40	HLA-B35:01	HISLDIIEY	0.9782	0.7456	0.2396	41.6	0.1611	11.53	1/248	1/7086
INDEL	Thyroid	FGD2_R148Wfs*4	HLA-B35:01	FPEDVVWPL	0.9908	0.9811	0.2868	9.2	0.0326	2.23	1/248	1/7086
INDEL	Thyroid	DSE_I430_V431insIP	HLA-C12:03	RAIYDIIPV	0.944	0.9937	0.9152	28.8	0.1148	2.44	1/248	1/7086
INDEL	Thyroid	DSE_I430_V431insIP	HLA-A03:01	AIYDIIPVHR	0.9894	0.649	0.0214	188.2	0.6149	2.44	1/248	1/7086
INDEL	Thyroid	HDAC9_N970Lfs*7	HLA-B18:01	SEACVLTQM	0.9767	0.7864	0.2896	147.5	0.0955	3.9	1/248	1/7086
INDEL	Thyroid	BCAP29_N155Pfs*20	HLA-B18:01	MEEPIILF	0.999	0.8588	0.5886	159.4	0.0992	42.1	1/248	1/7086
INDEL	Thyroid	BCAP29_N155Pfs*20	HLA-C12:03	FMEEPIILF	0.9533	0.9904	0.3367	296.1	1.0782	42.1	1/248	1/7086
INDEL	Thyroid	BCAP29_N155Pfs*20	HLA-B18:01	MEEPIILFL	0.9654	0.7433	0.4048	157.1	0.0985	42.1	1/248	1/7086
INDEL	Thyroid	RBM28_V319_S320insTELV	HLA-C12:03	KAVQVTELV	0.7202	0.9598	0.4295	252.5	0.9668	5.8	1/248	1/7086
INDEL	Thyroid	DOCK5_V607Sfs*34	HLA-C12:03	IALKTAFRL	0.9315	0.9644	0.6973	307	1.106	17.22	1/248	2/7086
INDEL	Thyroid	DOCK5_V607Sfs*34	HLA-C12:03	SAPQSSPRM	0.8741	0.9709	0.3925	450.9	1.4476	17.22	1/248	2/7086
INDEL	Thyroid	PREX2_P674_R675insS	HLA-C12:03	STKPSRETV	0.961	0.9608	0.5962	415.8	1.3727	11.04	1/248	1/7086
INDEL	Thyroid	FZD6_I234Kfs*26	HLA-C12:03	VSLYITLSV	0.8984	0.9867	1.0394	91.1	0.4126	53.15	1/248	1/7086
INDEL	Thyroid	FZD6_I234Kfs*26	HLA-C12:03	YITLSVTAL	0.9925	0.9754	0.7399	66.7	0.3151	53.15	1/248	1/7086
INDEL	Thyroid	FZD6_I234Kfs*26	HLA-B35:01	ITLSVTALY	0.9501	0.8251	1.1679	158.8	0.4251	53.15	1/248	1/7086
INDEL	Thyroid	FZD6_I234Kfs*26	HLA-C12:03	LSVTALYLL	0.9497	0.9661	1.6663	371	1.2711	53.15	1/248	1/7086
INDEL	Thyroid	ZNF462_V885_Y886insLETW	HLA-B35:01	DPNDHSAVL	0.9726	0.8393	0.2978	174.7	0.4525	9.7	1/248	1/7086
INDEL	Thyroid	USP54_P926Gfs*32	HLA-B35:01	LPAMSHTHH	0.9675	0.7583	1.4863	459.3	0.8354	48.1	1/248	1/7086
INDEL	Thyroid	USP54_P926Gfs*32	HLA-B35:01	PAMSHTHHY	0.972	0.6812	0.4986	389.6	0.7515	48.1	1/248	1/7086
INDEL	Thyroid	USP54_P926Gfs*32	HLA-B35:01	LPHSTAPPV	0.9509	0.9324	0.5723	94.9	0.3079	48.1	1/248	1/7086
INDEL	Thyroid	USP54_P926Gfs*32	HLA-B35:01	LPAMSHTHHY	0.9986	0.726	0.2009	22.6	0.0925	48.1	1/248	1/7086
INDEL	Thyroid	IDE_N184Kfs*15	HLA-C12:03	NTMQLIQNM	0.8306	0.9899	0.6392	137.7	0.601	13.67	1/248	1/7086
INDEL	Thyroid	ZNF518A_K123delinsIGLHLE	HLA-C12:03	FSCLIGLHL	0.9598	0.9813	0.5829	394.5	1.3272	16.66	1/248	1/7086
INDEL	Thyroid	PIK3C2A_E291_E292insKTIP	HLA-B35:01	IPEKNVSSL	0.9714	0.8264	0.0686	317.9	0.6635	27.41	1/248	1/7086
INDEL	Thyroid	BIRC2_T393_P394insINM	HLA-C12:03	AVMMNTINM	0.9413	0.993	1.0192	87.9	0.3991	35.82	1/248	1/7086
INDEL	Thyroid	BIRC2_T393_P394insINM	HLA-B35:01	MPVVKSALEM	0.9963	0.8728	0.5657	14.3	0.0562	35.82	1/248	1/7086
INDEL	Thyroid	BIRC2_P394Lfs*5	HLA-B35:01	DAVMMNTLY	0.9858	0.8635	0.3152	31.1	0.1234	35.82	1/248	1/7086
INDEL	Thyroid	UTP20_T1002Yfs*24	HLA-B18:01	SEDNAVVKY	0.9921	0.9453	0.033	342	0.2203	4.91	1/248	1/7086
INDEL	Thyroid	UTP20_T1002Yfs*24	HLA-B35:01	SPPSRSISY	0.9743	0.5502	0.1704	187.1	0.4724	4.91	1/248	1/7086
INDEL	Thyroid	UTP20_T1002Yfs*24	HLA-C12:03	ISYSDENFV	0.8511	0.983	1.3344	281.8	1.0408	4.91	1/248	1/7086
INDEL	Thyroid	UTP20_T1002Yfs*24	HLA-C12:03	YVHSPPSRSI	0.9933	0.9744	0.3837	302.5	1.0944	4.91	1/248	1/7086
INDEL	Thyroid	NAA25_Y355delinsSAH	HLA-B18:01	EELMFQSAH	0.993	0.8298	0.3057	177.6	0.1114	7.75	1/248	1/7086
INDEL	Thyroid	NAA25_Y355delinsSAH	HLA-C12:03	FQSAHFKKF	0.916	0.97	0.4675	279.3	1.034	7.75	1/248	1/7086
INDEL	Thyroid	NAA25_Y355delinsSAH	HLA-B18:01	EELMFQSAHF	0.9898	0.8197	0.3199	60.3	0.0415	7.75	1/248	1/7086
INDEL	Thyroid	TRAFD1_A147Vfs*36	HLA-B18:01	NEVVNMPY	0.9992	0.8482	0.2287	36.3	0.025	24.96	1/248	1/7086
INDEL	Thyroid	TRAFD1_A147Vfs*36	HLA-B35:01	MPYLLMHM	0.9955	0.8313	0.8004	250.9	0.5751	24.96	1/248	1/7086
INDEL	Thyroid	TRAFD1_A147Vfs*36	HLA-B18:01	NEVVNMPYL	0.9104	0.8387	0.6556	474	0.2905	24.96	1/248	1/7086
INDEL	Thyroid	TRAFD1_A147Vfs*36	HLA-C12:03	VVNMPYLLM	0.8582	0.9605	1.073	289.7	1.0617	24.96	1/248	1/7086
INDEL	Thyroid	TRAFD1_A147Vfs*36	HLA-B35:01	MPYLLMHMM	0.9959	0.8493	0.1401	7.8	0.0257	24.96	1/248	1/7086
INDEL	Thyroid	TRAFD1_A147Vfs*36	HLA-C12:03	HMMNLGVRM	0.9708	0.9883	1.749	128.4	0.5642	24.96	1/248	1/7086
INDEL	Thyroid	NUPL1_S222Ffs*23	HLA-C12:03	IVAPQIKRV	0.9434	0.9869	0.0452	379.7	1.2933	10.8	1/248	1/7086
INDEL	Thyroid	N4BP2L1_L62Sfs*11	HLA-C12:03	KTTLARQSM	0.6824	0.9679	1.211	356.2	1.2323	13.95	1/248	1/7086
INDEL	Thyroid	N4BP2L1_L62Sfs*11	HLA-B35:01	LARQSMCSM	0.7503	0.7966	1.6082	156.8	0.4215	13.95	1/248	1/7086
INDEL	Thyroid	N4BP2L1_L62Sfs*11	HLA-C12:03	LARQSMCSM	0.8492	0.9784	0.6616	27.2	0.1072	13.95	1/248	1/7086
INDEL	Thyroid	LPAR6_L32delinsFQ	HLA-C12:03	FSMVFVLGF	0.7455	0.985	0.585	64.2	0.3036	20.18	1/248	1/7086
INDEL	Thyroid	LPAR6_L32delinsFQ	HLA-C12:03	FQISNCVAI	0.9891	0.946	1.2398	92.1	0.4171	20.18	1/248	1/7086
INDEL	Thyroid	LPAR6_L32delinsFQ	HLA-B35:01	QISNCVAIY	0.8561	0.6233	1.5578	459.1	0.8352	20.18	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	MARLVSVM	0.9995	0.9816	0.5058	299.5	1.0868	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	TATARLVGM	0.98	0.9759	0.2227	112.1	0.4942	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	TARLVGMEI	0.8563	0.9753	0.3152	144.5	0.627	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-B18:01	MEINVNSSA	0.7976	0.791	0.4825	337.5	0.2179	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-B35:01	SAVTEGLVY	0.994	0.9107	0.0412	27.5	0.1098	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	AVTEGLVYV	0.6035	0.9916	0.2896	187.9	0.7829	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	LVYVVNVPV	0.9536	0.9637	1.9682	163.5	0.6929	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-B35:01	YVVNVPVTM	0.9772	0.9026	0.1149	47.5	0.1841	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	YVVNVPVTM	0.9962	0.9479	0.0835	9.2	0.0202	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	VVNVPVTML	0.9819	0.9486	0.3837	330.2	1.1655	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	FMGTPVNVM	0.9957	0.9923	0.5868	85.9	0.3918	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	NVMRGTVEL	0.9968	0.9752	0.2745	124.7	0.5488	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	ILMTSVQVM	0.9947	0.9902	0.9152	128.8	0.5658	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	TSVQVMDSV	0.6979	0.967	1.6372	323	1.1476	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	SAREARICL	0.9689	0.9668	0.3717	146.3	0.6336	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	NVANAPAIL	0.9354	0.9703	0.6018	371.3	1.272	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	NAPAILQEI	0.9529	0.9866	0.2367	380.7	1.2959	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	MARLVSVMI	0.9727	0.9787	0.6556	109.4	0.4847	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	LVSVMIAAV	0.9219	0.9944	1.6615	230	0.9117	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-B35:01	MIAAVKTSM	0.9788	0.95	0.8859	93.7	0.3052	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	MIAAVKTSM	0.9989	0.98	0.4167	55.5	0.2498	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	IAAVKTSMV	0.9845	0.9794	0.4409	74.2	0.3476	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	WSVEATAHV	0.9198	0.9817	1.5067	57.7	0.2642	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	TAHVPVVAV	0.9966	0.9883	0.0187	40.3	0.1736	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	SSANIRGSV	0.9087	0.9603	0.9472	163.4	0.6925	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	MAKSAVTEGL	0.9971	0.9933	0.8024	450.2	1.4462	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	YVVNVPVTML	0.999	0.9406	0.6837	303.8	1.0977	3.12	1/248	1/7086
INDEL	Thyroid	ITGBL1_T190Nfs*226	HLA-C12:03	TAHVPVVAVF	0.9987	0.9835	0.2557	293.4	1.0712	3.12	1/248	1/7086
INDEL	Thyroid	EIF5_D167Ffs*63	HLA-C12:03	KGVEWMKSV	0.6678	0.9617	0.7881	453.2	1.4523	58.01	1/248	1/7086
INDEL	Thyroid	EIF5_D167Ffs*63	HLA-B18:01	VEWMKSVTM	0.9912	0.9485	0.2253	49.8	0.0354	58.01	1/248	1/7086
INDEL	Thyroid	EIF5_D167Vfs*63	HLA-C12:03	KGVEWMKSV	0.6678	0.9617	0.7881	453.2	1.4523	58.01	1/248	1/7086
INDEL	Thyroid	EIF5_D167Vfs*63	HLA-B18:01	VEWMKSVTM	0.9912	0.9485	0.2253	49.8	0.0354	58.01	1/248	1/7086
INDEL	Thyroid	DTWD1_Y122Lfs*33	HLA-C12:03	LAPEFVNIL	0.9968	0.9863	0.0452	71	0.3342	6.5	1/248	1/7086
INDEL	Thyroid	DTWD1_Y122Lfs*33	HLA-C12:03	FMLTRIRVF	0.9426	0.9874	0.5982	77.6	0.3612	6.5	1/248	1/7086
INDEL	Thyroid	DTWD1_Y122Lfs*33	HLA-C12:03	FQNMKKRTM	0.8141	0.9906	1.0547	138.7	0.605	6.5	1/248	1/7086
INDEL	Thyroid	DTWD1_Y122Lfs*33	HLA-C12:03	RTMKLHSFF	0.5525	0.9811	0.557	92.7	0.4196	6.5	1/248	1/7086
INDEL	Thyroid	DTWD1_Y122Lfs*33	HLA-B35:01	HSFFLDLSL	0.8629	0.9342	1.9682	413.3	0.7806	6.5	1/248	1/7086
INDEL	Thyroid	DTWD1_Y122Lfs*33	HLA-C12:03	HSFFLDLSL	0.9727	0.9928	0.6079	23	0.0866	6.5	1/248	1/7086
INDEL	Thyroid	PYGO1_Q45_G46insYG	HLA-C12:03	YGGPSFPPL	0.9597	0.9894	0.6233	235.7	0.9262	7.03	2/248	2/7086
INDEL	Thyroid	WDR90_L1684Sfs*14	HLA-C12:03	FAMSLSSV	0.9986	0.9939	0.7554	80.4	0.372	10.53	1/248	1/7086
INDEL	Thyroid	ZC3H7A_S836Tfs*79	HLA-C12:03	FSTPRTTST	0.8851	0.9466	1.0292	217	0.8756	32.2	1/248	1/7086
INDEL	Thyroid	ZC3H7A_S836Tfs*79	HLA-C12:03	TASQQAISV	0.8907	0.9804	0.5312	194.8	0.8065	32.2	1/248	1/7086
INDEL	Thyroid	ZC3H7A_S836Tfs*79	HLA-C12:03	ASQQAISVF	0.9605	0.9787	0.3914	270.9	1.011	32.2	1/248	1/7086
INDEL	Thyroid	ZC3H7A_S397Lfs*36	HLA-B18:01	LEMTLETF	0.9996	0.8777	0.4409	157.2	0.0985	32.2	1/248	1/7086
INDEL	Thyroid	ZC3H7A_S397Lfs*36	HLA-C12:03	ISWEFQVSL	0.998	0.9875	0.433	65.8	0.3111	32.2	1/248	1/7086
INDEL	Thyroid	ZC3H7A_S397Lfs*36	HLA-B18:01	WEFQVSLEM	0.9973	0.8989	0.5583	7.4	0.0074	32.2	1/248	1/7086
INDEL	Thyroid	ZC3H7A_S397Lfs*36	HLA-C12:03	FQVSLEMTL	0.9945	0.9809	0.9203	106.1	0.4727	32.2	1/248	1/7086
INDEL	Thyroid	ZC3H7A_S397Lfs*36	HLA-B18:01	LEMTLETFL	0.9118	0.9094	1.8016	283.4	0.1885	32.2	1/248	1/7086
INDEL	Thyroid	ZC3H7A_S397Lfs*36	HLA-C12:03	MTLETFLEV	0.9259	0.9855	0.3254	30.3	0.1213	32.2	1/248	1/7086
INDEL	Thyroid	ZC3H7A_S397Lfs*36	HLA-B18:01	LETFLEVQL	0.8597	0.9257	1.3526	436	0.2695	32.2	1/248	1/7086
INDEL	Thyroid	MLKL_L347Ffs*10	HLA-C12:03	YQVKFRWSL	0.9375	0.9902	0.5419	149.2	0.6438	9.62	1/248	1/7086
INDEL	Thyroid	FLII_Y243Qfs*66	HLA-C12:03	GAVPVHRPV	0.9612	0.9883	0.367	170.4	0.7186	84.94	1/248	1/7086
INDEL	Thyroid	FLII_Y243Qfs*66	HLA-B35:01	QAEEAVPEF	0.8796	0.9759	0.4475	75.3	0.26	84.94	1/248	1/7086
INDEL	Thyroid	UTP6_D106Nfs*86	HLA-C12:03	LMFNFGSPM	0.9954	0.9578	1.3658	21.6	0.0773	18.6	1/248	1/7086
INDEL	Thyroid	UTP6_D106Nfs*86	HLA-C12:03	FNFGSPMWL	0.6363	0.9761	0.2712	57.3	0.2614	18.6	1/248	1/7086
INDEL	Thyroid	UTP6_D106Nfs*86	HLA-C12:03	FGSPMWLFV	0.5161	0.9803	0.5213	231.6	0.9159	18.6	1/248	1/7086
INDEL	Thyroid	UTP6_D106Nfs*86	HLA-C12:03	FVRSGLLKL	0.9742	0.9926	0.2526	35	0.1467	18.6	1/248	1/7086
INDEL	Thyroid	UTP6_D106Nfs*86	HLA-C12:03	YSLPCWRFI	0.5862	0.9465	0.7594	155.5	0.6662	18.6	1/248	1/7086
INDEL	Thyroid	INTS2_I577Kfs*23	HLA-C12:03	FIDSCVKPL	0.9818	0.9431	0.7494	439.2	1.4223	3.85	1/248	1/7086
INDEL	Thyroid	GRB2_L164Sfs*51	HLA-B35:01	YVQASSLTL	0.7902	0.8334	1.1532	232.9	0.5469	64	1/248	1/7086
INDEL	Thyroid	GRB2_L164Sfs*51	HLA-C12:03	YVQASSLTL	0.9944	0.9677	0.5264	19.9	0.0694	64	1/248	1/7086
INDEL	Thyroid	GRB2_L164Sfs*51	HLA-C12:03	ASAGEILSM	0.9956	0.9863	0.2712	83	0.3814	64	1/248	1/7086
INDEL	Thyroid	GRB2_L164Sfs*51	HLA-B35:01	LATGRPACF	0.6788	0.9079	0.5829	293.3	0.6337	64	1/248	1/7086
INDEL	Thyroid	GRB2_L164Sfs*51	HLA-B35:01	RPACFPAIM	0.9879	0.7366	0.6737	70.6	0.2477	64	1/248	1/7086
INDEL	Thyroid	L3MBTL4_K159_F160insTEYIVNFKK	HLA-C12:03	YIVNFKKFV	0.7016	0.968	1.5067	333.6	1.1739	2.99	1/248	1/7086
INDEL	Thyroid	L3MBTL4_K159_F160insTEYIVNFKK	HLA-B18:01	TEYIVNFKKF	0.9096	0.7605	0.7638	384.5	0.2414	2.99	1/248	1/7086
INDEL	Thyroid	ZNF583_T487Rfs*10	HLA-C12:03	HQRIHRVSL	0.9925	0.9856	0.1704	317.4	1.1333	3.06	1/248	1/7086
INDEL	Thyroid	ZNF583_T487Rfs*10	HLA-C12:03	RVSLWRETL	0.9393	0.9831	0.3413	177.3	0.7447	3.06	1/248	1/7086
INDEL	Thyroid	RALGAPB_V279_A280insPHIR	HLA-C12:03	RAQTWFRFL	0.7619	0.9779	0.0523	223.3	0.8939	18.77	1/248	1/7086
INDEL	Thyroid	TTC3_N1243Tfs*13	HLA-B35:01	KPKPVSATF	0.9059	0.8639	0.0062	304.4	0.6474	48.76	1/248	1/7086
INDEL	Thyroid	TTC3_N1243Tfs*13	HLA-C12:03	TFFILPSQL	0.53	0.9887	1.9404	438.6	1.4211	48.76	1/248	1/7086
INDEL	Thyroid	MN1_E385Dfs*101	HLA-C12:03	HAAQPARAI	0.933	0.9926	0.1149	51.7	0.2299	3.66	1/248	1/7086
INDEL	Thyroid	MN1_E385Dfs*101	HLA-B35:01	GAQPAAAAF	0.9385	0.9595	0.4213	179	0.4596	3.66	1/248	1/7086
INDEL	Thyroid	MN1_E385Dfs*101	HLA-C12:03	GAQPAAAAF	0.8888	0.9949	0.361	177.5	0.7455	3.66	1/248	1/7086
INDEL	Thyroid	MN1_E385Dfs*101	HLA-C12:03	AAAFRRAPL	0.9892	0.9858	0.2335	95.2	0.4301	3.66	1/248	1/7086
INDEL	Thyroid	KDELR3_Y191Ifs*8	HLA-C12:03	TIFIITKTI	0.9023	0.9863	1.0837	213.4	0.8648	38.26	1/248	1/7086
INDEL	Thyroid	CASK_K756Rfs*40	HLA-B35:01	APRPVCVPY	0.9809	0.744	0.0465	68	0.2419	7.36	1/248	1/7086
INDEL	Thyroid	CASK_K756Rfs*40	HLA-B35:01	RPVCVPYSTY	0.9912	0.8896	0.0601	159.3	0.426	7.36	1/248	1/7086
INDEL	Thyroid	FMR1_G491Yfs*4	HLA-C12:03	RGPGYTSYL	0.6642	0.9738	0.6715	270.6	1.01	31.42	1/248	1/7086
INDEL	Thyroid	ZNF275_V137Lfs*18	HLA-C12:03	VSLGGWRSL	0.9874	0.9931	0.2925	140.9	0.6134	7.36	1/248	1/7086
INDEL	Thyroid	VPS13D_S1320Tfs*20	HLA-B35:01	HQSHHSTSY	0.8655	0.7356	0.9889	292.3	0.6324	13.68	1/248	1/7086
INDEL	Thyroid	RANBP2_C3221Lfs*25	HLA-A32:01	RITITELLW	0.9955	0.9884	0.0539	126.1	0.2194	24.23	1/248	1/7086
INDEL	Thyroid	ZNF852_R288Kfs*13	HLA-A32:01	RSKNLVKTF	0.9761	0.9855	0.0948	272	0.4587	1.32	1/248	1/7086
INDEL	Thyroid	ZNF852_R288Kfs*13	HLA-B35:01	TPTSVSAHW	0.9875	0.8128	0.0794	335.3	0.6832	1.32	1/248	1/7086
INDEL	Thyroid	SLC4A4_P1063delinsLFS	HLA-B35:01	QPFLSDSKLF	0.925	0.8005	0.6737	427	0.7967	18.22	1/248	1/7086
INDEL	Thyroid	LARP1B_W295Ffs*25	HLA-A32:01	KLGQFQALL	0.9697	0.9739	0.4865	118.7	0.202	5.11	1/248	1/7086
INDEL	Thyroid	CTSO_R86Nfs*29	HLA-A32:01	KQTFQVSQI	0.9053	0.9382	0.7533	394.4	0.622	45.95	1/248	1/7086
INDEL	Thyroid	CTSO_R86Nfs*29	HLA-A32:01	QTFQVSQIL	0.7436	0.7999	1.1792	372.2	0.5917	45.95	1/248	1/7086
INDEL	Thyroid	CTSO_R86Nfs*29	HLA-A32:01	AIYLNLKQTF	0.993	0.8754	0.5637	444.9	0.6898	45.95	1/248	1/7086
INDEL	Thyroid	CTSO_R86Nfs*29	HLA-A32:01	STYVHPQCVF	0.9819	0.8905	0.4061	406.2	0.6386	45.95	1/248	1/7086
INDEL	Thyroid	RAD50_K1119Cfs*16	HLA-A32:01	RIWIFIIRL	0.9638	0.9549	0.1182	134.9	0.2387	13.88	1/248	1/7086
INDEL	Thyroid	ZBED9_K928Ffs*11	HLA-B35:01	DIFFSLFAY	0.9018	0.707	1.2465	43.6	0.1684	1.71	1/248	1/7086
INDEL	Thyroid	CPED1_L499Pfs*12	HLA-B35:01	VPDPILVSF	0.998	0.6865	0.0142	16	0.0655	2.27	1/248	1/7086
INDEL	Thyroid	CPED1_L499Pfs*12	HLA-B35:01	SVPDPILVSF	0.9913	0.6777	0.1886	306.8	0.6504	2.27	1/248	1/7086
INDEL	Thyroid	CPED1_L499Hfs*15	HLA-B35:01	LVDPILVSF	0.9826	0.7233	0.0745	140.1	0.3917	2.27	1/248	1/7086
INDEL	Thyroid	CPED1_L499Hfs*15	HLA-C08:02	LVDPILVSF	0.9993	0.9442	0.0396	429.6	0.0502	2.27	1/248	1/7086
INDEL	Thyroid	CPED1_L499Hfs*15	HLA-A32:01	KLVDPILVSF	0.9987	0.9668	0.0052	66.5	0.1221	2.27	1/248	1/7086
INDEL	Thyroid	CNTNAP2_L663Vfs*11	HLA-A32:01	QVSFTAPPW	0.8259	0.9846	1.276	190.9	0.3383	2.43	1/248	1/7086
INDEL	Thyroid	STAU2_P409_K410insF	HLA-B35:01	TPFKGILHL	0.9734	0.8684	0.0109	192.9	0.4811	5.97	1/248	2/7086
INDEL	Thyroid	STAU2_P409_K410insF	HLA-B35:01	FPEPTNNTPF	0.9981	0.9389	0.2054	12.1	0.0454	5.97	1/248	2/7086
INDEL	Thyroid	KIAA1429_Q555Ffs*23	HLA-A32:01	VTAGSAILF	0.9668	0.9523	0.6038	224	0.3874	9.18	1/248	1/7086
INDEL	Thyroid	NDUFAF6_L320delinsQVF	HLA-B35:01	NTLQVFPLY	0.9273	0.8593	1.211	334.1	0.6819	4.15	1/248	1/7086
INDEL	Thyroid	NDUFAF6_L320delinsQVF	HLA-A32:01	QVFPLYLYI	0.9758	0.831	0.5296	36.7	0.0662	4.15	1/248	1/7086
INDEL	Thyroid	PTK2_D342Sfs*6	HLA-B35:01	TIAENMASF	0.983	0.9412	0.6616	57.7	0.2172	11.8	1/248	1/7086
INDEL	Thyroid	HRCT1_R94Tfs*63	HLA-B14:01	HHHHHPTPL	0.9912	0.8489	0.2604	252	0.0168	2.08	1/248	1/7086
INDEL	Thyroid	HRCT1_R94Tfs*63	HLA-B35:01	HPTPLTTST	0.875	0.7715	0.8271	392.4	0.755	2.08	1/248	1/7086
INDEL	Thyroid	PTAR1_I35Ffs*8	HLA-C08:02	HIDEIGLFL	0.9995	0.9687	0.0166	86.3	0.01	6.94	1/248	1/7086
INDEL	Thyroid	SPIN1_K260Nfs*5	HLA-A32:01	YVYDLVNHL	0.9149	0.9106	0.0412	409.3	0.6429	43.57	1/248	1/7086
INDEL	Thyroid	SPIN1_K260Nfs*5	HLA-B35:01	YVYDLVNHLY	0.9969	0.7535	0.0822	103	0.3255	43.57	1/248	1/7086
INDEL	Thyroid	RABGAP1_V380_I381insN	HLA-A32:01	KSYVNITGSW	0.9967	0.9804	0.1514	92.6	0.165	21.95	1/248	1/7086
INDEL	Thyroid	RABGAP1_V380_I381insDY	HLA-B35:01	YVDYITGSW	0.8875	0.8929	1.7146	305.5	0.6488	21.95	1/248	1/7086
INDEL	Thyroid	RABGAP1_V380_I381insDY	HLA-A32:01	KSYVDYITGSW	0.999	0.9591	0.3235	356.3	0.5722	21.95	1/248	1/7086
INDEL	Thyroid	C9orf116_N96Rfs*15	HLA-A32:01	RTILSMFTW	0.9976	0.9088	0.0045	7.6	0.01	6.47	1/248	1/7086
INDEL	Thyroid	IFIT3_S389Afs*36	HLA-A32:01	KMHQIIGIF	0.9913	0.8873	0.1465	26.5	0.0485	17.8	1/248	1/7086
INDEL	Thyroid	CFAP43_S747Kfs*15	HLA-A32:01	KSFRRFGIRF	0.9918	0.7035	0.4967	140.9	0.2511	2.66	1/248	1/7086
INDEL	Thyroid	PIK3C2A_I847Nfs*22	HLA-B14:01	NRIRLFIQL	0.9988	0.6514	0.033	204.9	0.0135	23.53	1/248	1/7086
INDEL	Thyroid	PIK3C2A_I847Nfs*22	HLA-A32:01	RIRLFIQLL	0.9761	0.9862	0.5144	98.8	0.1723	23.53	1/248	1/7086
INDEL	Thyroid	PIK3C2A_I847Nfs*22	HLA-A32:01	RLFIQLLKL	0.9892	0.9728	0.1994	32.5	0.0586	23.53	1/248	1/7086
INDEL	Thyroid	CD3G_V99_Y100insVS	HLA-B35:01	KPLQVVSYY	0.9953	0.7086	0.0465	98.8	0.3166	4.93	1/248	1/7086
INDEL	Thyroid	ARHGEF7_E334Ifs*49	HLA-B35:01	SPFCSECPH	0.9305	0.5744	1.2177	441.9	0.8148	7.34	1/248	1/7086
INDEL	Thyroid	ARHGEF7_E334Ifs*49	HLA-B35:01	VPHVLCQSPF	0.9761	0.7902	1.224	272.5	0.6065	7.34	1/248	1/7086
INDEL	Thyroid	ALDH6A1_I503delinsSYNVF	HLA-A32:01	GSYNVFQFY	0.9216	0.9281	0.1581	444.3	0.6891	15.69	1/248	1/7086
INDEL	Thyroid	ALDH6A1_I503delinsSYNVF	HLA-A32:01	NVFQFYTQL	0.7033	0.9314	0.6875	351.8	0.5666	15.69	1/248	1/7086
INDEL	Thyroid	ALDH6A1_I503delinsSYNVF	HLA-A32:01	KQGSYNVFQF	0.9719	0.9398	1.3988	235.6	0.4038	15.69	1/248	1/7086
INDEL	Thyroid	RHBDF1_R743Pfs*186	HLA-B35:01	SPSCPTSAL	0.976	0.8405	0.0267	120.6	0.3595	6.58	1/248	1/7086
INDEL	Thyroid	RHBDF1_R743Pfs*186	HLA-A32:01	SSSFRWSSW	0.9803	0.987	0.388	205.8	0.3613	6.58	1/248	1/7086
INDEL	Thyroid	RHBDF1_R743Pfs*186	HLA-A32:01	SSWASWLAW	0.9835	0.9813	0.3302	13.8	0.0214	6.58	1/248	1/7086
INDEL	Thyroid	RHBDF1_R743Pfs*186	HLA-A32:01	SVRSTNWTL	0.8525	0.975	0.6949	112.7	0.1926	6.58	1/248	1/7086
INDEL	Thyroid	RHBDF1_R743Pfs*186	HLA-A32:01	RSSSFRWSSW	0.9921	0.9868	0.1369	67.4	0.1235	6.58	1/248	1/7086
INDEL	Thyroid	RHBDF1_R743Pfs*186	HLA-A32:01	SSWASWLAWW	0.9642	0.9893	1.5528	134	0.2368	6.58	1/248	1/7086
INDEL	Thyroid	RHBDF1_R743Pfs*186	HLA-A32:01	SSFRWSSWASW	0.9968	0.9892	0.9621	304.4	0.5022	6.58	1/248	1/7086
INDEL	Thyroid	ZNF66_F42Lfs*35	HLA-A32:01	LTYRTFLVL	0.9677	0.9403	0.2213	165.8	0.2954	1.35	1/248	1/7086
INDEL	Thyroid	ZIK1_Y407delinsFSSVN	HLA-A32:01	RVHTGERPF	0.944	0.9279	0.2604	311	0.5116	3.71	1/248	1/7086
INDEL	Thyroid	B3GALT5_T93Gfs*34	HLA-A32:01	KQLKGHSSSW	0.9261	0.9779	0.0583	332.5	0.5415	1.22	1/248	1/7086
INDEL	Thyroid	MACF1_Q5037Lfs*25	HLA-A03:01	RSLMLWVLK	0.9958	0.5292	0.3461	51.8	0.1941	12.69	1/248	1/7086
INDEL	Thyroid	USP33_K100Ifs*10	HLA-C03:04	HSQETITGM	0.9973	0.9874	0.5686	172.1	0.5094	15.95	1/248	1/7086
INDEL	Thyroid	PI4KB_V6_E7insL	HLA-C03:04	TVVLEPAPL	0.9959	0.9913	0.7788	156.4	0.4805	33.71	1/248	1/7086
INDEL	Thyroid	NCKAP1_V1110Nfs*10	HLA-C03:04	FPYNPQNFF	0.9761	0.9709	0.3974	119.8	0.4055	11.86	1/248	1/7086
INDEL	Thyroid	GOLGA4_V1715Gfs*14	HLA-C03:04	SAKNGFLYL	0.9968	0.9923	0.0643	102.7	0.3692	23.71	1/248	1/7086
INDEL	Thyroid	GOLGA4_V1715Gfs*14	HLA-B07:02	VPRSAKNGFL	0.9984	0.5524	0.1915	19.8	0.0691	23.71	1/248	1/7086
INDEL	Thyroid	FRYL_L313_Y314insQKFH	HLA-C07:02	FHYPLITCL	0.6103	0.7766	0.0808	114.9	0.0621	4.06	1/248	1/7086
INDEL	Thyroid	FRYL_L313_Y314insQKFH	HLA-C03:04	FHYPLITCL	0.938	0.9516	0.9103	463.1	0.9558	4.06	1/248	1/7086
INDEL	Thyroid	FRYL_L313_Y314insQKFH	HLA-C07:02	HYPLITCLL	0.5831	0.663	0.4263	137.6	0.0758	4.06	1/248	1/7086
INDEL	Thyroid	FRYL_L313_Y314insQKFH	HLA-C07:02	FHYPLITCLL	0.9468	0.7872	1.6226	339.2	0.2248	4.06	1/248	1/7086
INDEL	Thyroid	SIL1_Q154Hfs*9	HLA-C07:02	ARHAIFLGL	0.9351	0.9349	0.0583	180.4	0.1144	25.27	1/248	1/7086
INDEL	Thyroid	SMURF1_H87Qfs*44	HLA-C07:02	YRIPAFGSM	0.9041	0.9601	0.148	19.5	0.0089	6.17	1/248	1/7086
INDEL	Thyroid	SMURF1_H87Qfs*44	HLA-C03:04	YRIPAFGSM	0.7813	0.9845	1.6274	477.3	0.9788	6.17	1/248	1/7086
INDEL	Thyroid	SMURF1_H87Qfs*44	HLA-C03:04	FGSMQTKPL	0.9991	0.9704	0.9129	89.4	0.3375	6.17	1/248	1/7086
INDEL	Thyroid	SMURF1_H87Qfs*44	HLA-B40:01	QETGSWLPGL	0.9354	0.8157	0.9152	165.7	0.3563	6.17	1/248	1/7086
INDEL	Thyroid	GBF1_L1157Dfs*93	HLA-C03:04	VADCSRPSI	0.996	0.9821	0.296	267.9	0.676	21.93	1/248	1/7086
INDEL	Thyroid	GBF1_L1157Dfs*93	HLA-C03:04	CSRPSIPPL	0.9965	0.9919	0.5962	85.5	0.3272	21.93	1/248	1/7086
INDEL	Thyroid	GBF1_L1157Dfs*93	HLA-C03:04	FATDEAQCAI	0.9973	0.9904	0.9059	279.3	0.6927	21.93	1/248	1/7086
INDEL	Thyroid	ZFYVE26_I1775Rfs*9	HLA-B07:02	SPAAPPGRI	0.9983	0.5511	0.4167	93	0.2811	2.42	1/248	1/7086
INDEL	Thyroid	ZFYVE26_I1775Rfs*9	HLA-C03:04	FSPAAPPGRIL	0.9996	0.9644	0.4438	379.3	0.831	2.42	1/248	1/7086
INDEL	Thyroid	BZRAP1_G878Vfs*22	HLA-B07:02	CPGRSGAQPA	0.9929	0.7464	1.9269	174.8	0.4319	8.16	1/248	1/7086
INDEL	Thyroid	SCAF1_T327Hfs*19	HLA-B07:02	SPRPDAQPHTA	0.9999	0.6177	0.0658	448.7	0.7807	23.09	1/248	1/7086
INDEL	Thyroid	LENG9_T270Qfs*36	HLA-A03:01	VLRPGPRTK	0.9971	0.5024	0.0745	88.7	0.3307	7.92	1/248	1/7086
INDEL	Thyroid	LENG9_T270Qfs*36	HLA-B07:02	GPRTKGPAL	0.9998	0.7327	0.0096	3.8	0.0074	7.92	1/248	1/7086
INDEL	Thyroid	LENG9_T270Qfs*36	HLA-B07:02	RTKGPALVL	0.991	0.7171	0.1418	176.3	0.4343	7.92	1/248	1/7086
INDEL	Thyroid	LENG9_T270Qfs*36	HLA-C03:04	RTKGPALVL	0.9911	0.9894	0.1025	300.1	0.7231	7.92	1/248	1/7086
INDEL	Thyroid	LENG9_T270Qfs*36	HLA-B07:02	GPALVLQPL	0.9981	0.5274	0.451	18.2	0.0629	7.92	1/248	1/7086
INDEL	Thyroid	LENG9_T270Qfs*36	HLA-C03:04	LANRAPHIL	0.9994	0.9882	0.3866	28.2	0.1237	7.92	1/248	1/7086
INDEL	Thyroid	LENG9_T270Qfs*36	HLA-B40:01	AETQKPSGVL	0.9942	0.6879	0.2382	98	0.2412	7.92	1/248	1/7086
INDEL	Thyroid	LENG9_T270Qfs*36	HLA-A11:01	GVLRPGPRTK	0.9967	0.596	0.2025	119.6	0.6946	7.92	1/248	1/7086
INDEL	Thyroid	LENG9_T270Qfs*36	HLA-A03:01	GVLRPGPRTK	0.9912	0.581	0.1566	116.4	0.4119	7.92	1/248	1/7086
INDEL	Thyroid	LENG9_T270Qfs*36	HLA-B07:02	RPGPRTKGPA	0.9974	0.6222	0.6692	98.8	0.2939	7.92	1/248	1/7086
INDEL	Thyroid	LENG9_T270Qfs*36	HLA-B07:02	GPRTKGPALV	0.9985	0.729	0.4153	49.8	0.1731	7.92	1/248	1/7086
INDEL	Thyroid	LENG9_T270Qfs*36	HLA-B07:02	RPGPRTKGPAL	1	0.7024	0.2151	7.5	0.0141	7.92	1/248	1/7086
INDEL	Thyroid	LENG9_T270Qfs*36	HLA-B07:02	GPRTKGPALVL	1	0.7455	0.1448	32.2	0.1142	7.92	1/248	1/7086
INDEL	Thyroid	DPYD_P789delinsHAA	HLA-B35:03	LPGFHAAIL	0.9797	0.947	0.3685	261.1	0.0465	10.6	1/248	1/7086
INDEL	Thyroid	FRRS1_N321Kfs*14	HLA-C07:02	NRFDLKHKL	0.9142	0.9532	0.033	277	0.1819	1.31	1/248	1/7086
INDEL	Thyroid	FRRS1_N321Kfs*14	HLA-C04:01	RFDLKHKLL	0.9824	0.9272	0.2684	483.4	0.0099	1.31	1/248	1/7086
INDEL	Thyroid	SMG7_D583Efs*21	HLA-A31:01	LLERRTTTR	0.8565	0.6058	1.8072	270	1.467	22.01	1/248	1/7086
INDEL	Thyroid	SMG7_D583Efs*21	HLA-A31:01	VTKNEVLLER	0.9829	0.5923	0.3851	58.9	0.4968	22.01	1/248	1/7086
INDEL	Thyroid	SMG7_D583Efs*21	HLA-A31:01	VLLERRTTTR	0.9557	0.63	0.7058	130.7	0.9141	22.01	1/248	1/7086
INDEL	Thyroid	RBM5_T536Kfs*20	HLA-A31:01	RLPKTWNAGLR	0.9851	0.7695	0.5686	198.2	1.1994	25.59	1/248	1/7086
INDEL	Thyroid	MMRN1_C474Mfs*9	HLA-C07:02	VRQEMTLTM	0.9674	0.9481	0.1514	48.5	0.0198	22.59	1/248	1/7086
INDEL	Thyroid	CALD1_N144Rfs*3	HLA-A31:01	RMQNDTAER	0.9612	0.5742	0.4347	23.7	0.1753	15.7	1/248	1/7086
INDEL	Thyroid	CASC10_R64Afs*30	HLA-C07:02	WLHPPHFSL	0.6626	0.8572	1.2592	304.5	0.2005	7.24	1/248	1/7086
INDEL	Thyroid	CASC10_R64Afs*30	HLA-B07:02	VPGASAAAAA	0.9797	0.785	1.156	328.2	0.6534	7.24	1/248	1/7086
INDEL	Thyroid	CASC10_R64Afs*30	HLA-B07:02	QPARNPQPWL	0.9533	0.7594	1.0192	171.6	0.4263	7.24	1/248	1/7086
INDEL	Thyroid	CASC10_R64Afs*30	HLA-A31:01	KVAPPGSQPAR	0.9979	0.83	0.1807	234.3	1.3437	7.24	1/248	1/7086
INDEL	Thyroid	ENTPD1_Q80Ifs*11	HLA-A31:01	VVHIRLASR	0.9609	0.5101	0.241	16	0.1054	35.41	1/248	1/7086
INDEL	Thyroid	ENTPD1_Q80Ifs*11	HLA-A31:01	VVHIRLASRR	0.9244	0.6399	1.6929	81.9	0.6482	35.41	1/248	1/7086
INDEL	Thyroid	USP47_R1355Lfs*10	HLA-C07:02	HRVTYSPLL	0.9299	0.9568	0.3217	64.4	0.0316	16.68	1/248	1/7086
INDEL	Thyroid	USP47_R1355Lfs*10	HLA-C07:02	HRVTYSPLLM	0.995	0.9454	0.5962	450.6	0.2941	16.68	1/248	1/7086
INDEL	Thyroid	USP47_R1355Lfs*10	HLA-A31:01	TYSPLLMYVKR	0.9926	0.588	1.4904	194.1	1.1819	16.68	1/248	1/7086
INDEL	Thyroid	TUT1_P233Qfs*41	HLA-A31:01	GLHPSFPSR	0.9805	0.8855	0.2684	51.2	0.4265	11.1	1/248	1/7086
INDEL	Thyroid	TUT1_P233Qfs*41	HLA-A03:01	GLHPSFPSR	0.9894	0.7526	0.4183	376.1	0.9976	11.1	1/248	1/7086
INDEL	Thyroid	TUT1_P233Qfs*41	HLA-B35:03	FPTGPSSPGL	0.9858	0.7446	0.458	204.1	0.0406	11.1	1/248	1/7086
INDEL	Thyroid	TUT1_P233Qfs*41	HLA-B35:03	FPSRFTTSCF	0.9723	0.8732	0.3851	346.1	0.056	11.1	1/248	1/7086
INDEL	Thyroid	MSANTD2_N508Efs*39	HLA-C07:02	SRSFPQIHL	0.9436	0.9076	0.2009	490.4	0.3224	13.99	1/248	1/7086
INDEL	Thyroid	MSANTD2_N508Efs*39	HLA-A31:01	QIHLHQICR	0.957	0.5921	0.5128	107.3	0.7966	13.99	1/248	1/7086
INDEL	Thyroid	MSANTD2_N508Efs*39	HLA-A31:01	HLHQICRSR	0.9693	0.7346	0.5982	72.1	0.5858	13.99	1/248	1/7086
INDEL	Thyroid	MSANTD2_N508Efs*39	HLA-A31:01	RSREGFSFRR	0.9965	0.534	0.0919	6.3	0.0192	13.99	1/248	1/7086
INDEL	Thyroid	CEP290_K912Nfs*44	HLA-A31:01	QLRNSQKMR	0.9095	0.5822	0.834	221.2	1.2914	3.57	1/248	1/7086
INDEL	Thyroid	CEP290_K912Nfs*44	HLA-C07:02	WRLKFVKKL	0.8702	0.8948	0.2778	214.7	0.1405	3.57	1/248	1/7086
INDEL	Thyroid	CEP290_K912Nfs*44	HLA-A31:01	DLRKWPFSR	0.8557	0.9309	0.0142	127.7	0.9001	3.57	1/248	1/7086
INDEL	Thyroid	CEP290_K912Nfs*44	HLA-C07:02	LRKWPFSRL	0.8195	0.9834	0.766	315.2	0.2083	3.57	1/248	1/7086
INDEL	Thyroid	CEP290_K912Nfs*44	HLA-A31:01	KDLRKWPFSR	0.8916	0.9201	1.2431	15.7	0.1022	3.57	1/248	1/7086
INDEL	Thyroid	UHRF1BP1L_K258_S259insPHNL	HLA-C07:02	VQYAKPHNL	0.9671	0.9608	0.0601	370.3	0.2445	3.23	1/248	1/7086
INDEL	Thyroid	UHRF1BP1L_K258_S259insPHNL	HLA-C07:02	YAKPHNLSL	0.9414	0.8907	0.0396	101.5	0.0554	3.23	1/248	1/7086
INDEL	Thyroid	MPHOSPH8_K550Sfs*27	HLA-C07:02	FMYTFSTLM	0.7009	0.9256	1.5753	117.3	0.0634	28.89	1/248	1/7086
INDEL	Thyroid	SLC46A3_L106Rfs*53	HLA-C07:02	QRLALFALL	0.9981	0.9429	0.6818	358.2	0.2371	18.72	1/248	1/7086
INDEL	Thyroid	SLC46A3_L106Rfs*53	HLA-B35:03	IPAFDCIYL	0.9717	0.8344	0.4347	236.6	0.0441	18.72	1/248	1/7086
INDEL	Thyroid	SLC46A3_L106Rfs*53	HLA-A31:01	VFRWCSCNQR	0.9739	0.76	1.0341	14.6	0.0904	18.72	1/248	1/7086
INDEL	Thyroid	ZBTB1_G259_K260insTFFTYI	HLA-C07:02	IRDGTFFTY	0.953	0.8769	0.0558	340.2	0.2254	10.26	1/248	1/7086
INDEL	Thyroid	ZWILCH_E268Dfs*12	HLA-B35:03	FATEISSCF	0.9624	0.8334	0.0344	489.1	0.0842	2.46	1/248	1/7086
INDEL	Thyroid	ADAMTSL3_L1385Tfs*77	HLA-C07:02	STFSRQPTL	0.9609	0.9177	0.2913	397.9	0.2622	3.43	1/248	1/7086
INDEL	Thyroid	ADAMTSL3_L1385Tfs*77	HLA-A31:01	AMTQQENPR	0.9042	0.7556	1.1142	366.8	1.751	3.43	1/248	1/7086
INDEL	Thyroid	GRIK5_M247Ifs*62	HLA-B07:02	KPAPTWAL	0.9997	0.6779	0.2382	15.2	0.0491	10.18	1/248	1/7086
INDEL	Thyroid	GRIK5_M247Ifs*62	HLA-B35:03	SPSCIWTVL	0.9642	0.8759	0.3235	193	0.039	10.18	1/248	1/7086
INDEL	Thyroid	GRIK5_M247Ifs*62	HLA-A31:01	SWASPCSTR	0.9225	0.5147	0.5058	205.8	1.2311	10.18	1/248	1/7086
INDEL	Thyroid	GRIK5_M247Ifs*62	HLA-B07:02	RPTPSTLSL	0.9999	0.6138	0.1227	4.9	0.0088	10.18	1/248	1/7086
INDEL	Thyroid	GRIK5_M247Ifs*62	HLA-A31:01	AASTCPGGR	0.8827	0.5682	0.9129	414.6	1.8787	10.18	1/248	1/7086
INDEL	Thyroid	GRIK5_M247Ifs*62	HLA-A31:01	KPAPTWALR	0.7751	0.9731	0.5419	316.5	1.6144	10.18	1/248	1/7086
INDEL	Thyroid	GRIK5_M247Ifs*62	HLA-A31:01	TSWASPCSTR	0.9685	0.5577	0.8771	62.6	0.5234	10.18	1/248	1/7086
INDEL	Thyroid	GRIK5_M247Ifs*62	HLA-B07:02	RPTPSTLSLS	0.9891	0.5467	1.6663	101.9	0.3004	10.18	1/248	1/7086
INDEL	Thyroid	GRIK5_M247Ifs*62	HLA-A31:01	TVKPAPTWALR	0.9968	0.9413	0.1963	76.1	0.6105	10.18	1/248	1/7086
INDEL	Thyroid	ATRX_A1734_M1735insK	HLA-A31:01	KMNSIRSRR	0.9943	0.5878	0.3089	4.3	0.0091	6.71	1/248	1/7086
INDEL	Thyroid	ATRX_A1734_M1735insK	HLA-A31:01	AKMNSIRSRR	0.792	0.6987	1.749	21.8	0.1591	6.71	1/248	1/7086
INDEL	Thyroid	ATRX_A1734_M1735insK	HLA-A31:01	KMNSIRSRRR	0.9889	0.6779	0.5471	11.9	0.066	6.71	1/248	1/7086
INDEL	Thyroid	ATRX_A1734_M1735insK	HLA-A31:01	KAKMNSIRSRR	0.9857	0.6826	1.5707	32.1	0.2541	6.71	1/248	1/7086
INDEL	Thyroid	UBR5_F2693Lfs*25	HLA-B15:01	VQMLISLPL	0.9706	0.763	0.7905	38.1	0.1869	18.55	1/248	1/7086
INDEL	Thyroid	UBR5_F2693Lfs*25	HLA-B35:01	MLISLPLSM	0.8834	0.8769	0.8813	86.8	0.2891	18.55	1/248	1/7086
INDEL	Thyroid	UBR5_F2693Lfs*25	HLA-B15:01	MLISLPLSM	0.9964	0.9052	0.2841	20.1	0.0787	18.55	1/248	1/7086
INDEL	Thyroid	UBR5_F2693Lfs*25	HLA-C03:03	MLISLPLSM	0.9926	0.9869	0.2868	25.4	0.1115	18.55	1/248	1/7086
INDEL	Thyroid	UBR5_F2693Lfs*25	HLA-C03:03	LSMMNQEKM	0.9982	0.9657	1.5887	136.1	0.4415	18.55	1/248	1/7086
INDEL	Thyroid	UBR5_F2693Lfs*25	HLA-A02:01	MLRSFCSSSV	0.8194	0.6698	0.9405	49.7	0.6265	18.55	1/248	1/7086
INDEL	Thyroid	UBR5_F2693Lfs*25	HLA-B15:01	MMNQEKMLRSF	0.9999	0.8681	1.9404	79.7	0.4275	18.55	1/248	1/7086
INDEL	Thyroid	PLXNC1_I1168_N1169insSGEPFYLLVTTLNQKI	HLA-A02:01	KISGEPFYL	0.9913	0.7613	0.1369	47.5	0.6017	15.73	1/248	1/7086
INDEL	Thyroid	CACNA2D4_R426Efs*17	HLA-A02:01	SLGEKCLLL	0.9667	0.7228	0.3685	139.5	1.3113	1.14	1/248	1/7086
INDEL	Thyroid	VAV2_K764Sfs*69	HLA-B35:03	LPVLPTTFL	0.9915	0.9289	0.1383	212.1	0.0415	26.63	1/248	1/7086
INDEL	Thyroid	DPY19L4_R39Lfs*25	HLA-B08:01	NALQRFSL	0.9998	0.5769	0.0686	12.8	0.0121	5.43	1/248	1/7086
INDEL	Thyroid	DPY19L4_R39Lfs*25	HLA-C08:02	ISDIPIPEL	0.9999	0.9415	0.0096	207.5	0.0224	5.43	1/248	1/7086
INDEL	Thyroid	DPY19L4_R39Lfs*25	HLA-B08:01	QNMYYFNAL	0.7588	0.8359	1.4485	134.9	0.2418	5.43	1/248	1/7086
INDEL	Thyroid	DPY19L4_R39Lfs*25	HLA-B14:02	QNMYYFNAL	0.9637	0.7857	0.7533	480.9	0.0387	5.43	1/248	1/7086
INDEL	Thyroid	DPY19L4_R39Lfs*25	HLA-C07:01	YYFNALQRF	0.779	0.513	0.1963	229.6	0.0852	5.43	1/248	1/7086
INDEL	Thyroid	DPY19L4_R39Lfs*25	HLA-B08:01	FNALQRFSL	0.9952	0.6829	1.0547	189.8	0.3368	5.43	1/248	1/7086
INDEL	Thyroid	DPY19L4_R39Lfs*25	HLA-B08:01	NALQRFSLA	0.9964	0.7843	1.2725	121	0.2156	5.43	1/248	1/7086
INDEL	Thyroid	DPY19L4_R39Lfs*25	HLA-B08:01	AVLQRLLVV	0.9938	0.5447	0.1383	483.9	0.747	5.43	1/248	1/7086
INDEL	Thyroid	CHEK2_E84Nfs*26	HLA-C07:01	FRMDLPIL	0.9996	0.6099	0.2319	207.8	0.0787	1.78	1/248	1/7086
INDEL	Thyroid	CHEK2_E84Nfs*26	HLA-C06:02	FRMDLPIL	0.9393	0.9957	0.2382	298.8	0.103	1.78	1/248	1/7086
INDEL	Thyroid	CHEK2_E84Nfs*26	HLA-B08:01	DQNLRSLPL	0.9952	0.5958	0.3736	87.9	0.1566	1.78	1/248	1/7086
INDEL	Thyroid	CHEK2_E84Nfs*26	HLA-C07:01	FRMDLPILNV	0.9844	0.6761	0.0835	158.5	0.0617	1.78	1/248	1/7086
INDEL	Thyroid	CHEK2_E84Nfs*26	HLA-C06:02	FRMDLPILNV	0.801	0.9964	0.0995	126	0.0462	1.78	1/248	1/7086
INDEL	Thyroid	PTBP2_N95Kfs*18	HLA-A31:01	SGIFGTSNR	0.9273	0.5262	0.4916	119	0.8579	2.42	1/248	1/7086
INDEL	Thyroid	TG_I821Yfs*6	HLA-B58:01	ASGNFSLFY	0.9412	0.9623	0.9889	477.5	1.385	2326.82	1/248	1/7086
INDEL	Thyroid	ARHGAP29_S882Rfs*17	HLA-C12:03	ITYRRSSM	0.9843	0.9768	1.221	454.6	1.4555	5.36	1/248	1/7086
INDEL	Thyroid	ARHGAP29_S882Rfs*17	HLA-A31:01	RLVEFLITYRR	0.9967	0.645	1.1501	64.9	0.5396	5.36	1/248	1/7086
INDEL	Thyroid	WIPF2_P182Qfs*56	HLA-C12:03	FTLVERDLL	0.899	0.9629	0.9814	468.7	1.4846	15.73	1/248	1/7086
INDEL	Thyroid	WIPF2_P182Qfs*56	HLA-C12:03	LLHPQSNHL	0.9989	0.974	0.7494	233	0.9194	15.73	1/248	1/7086
INDEL	Thyroid	WIPF2_P182Qfs*56	HLA-B38:01	LHPQSNHLL	0.9847	0.9045	0.367	491.5	0.0839	15.73	1/248	1/7086
INDEL	Thyroid	WIPF2_P182Qfs*56	HLA-A31:01	AAKPPPTTER	0.9906	0.6903	0.0888	240.5	1.3681	15.73	1/248	1/7086
INDEL	Thyroid	ZNF407_L1973Ffs*26	HLA-A31:01	LGGWSRSPR	0.9302	0.7492	1.224	60.6	0.5091	2.13	1/248	1/7086
INDEL	Thyroid	ZNF407_L1973Ffs*26	HLA-C12:03	WSRSPRGIL	0.7861	0.9755	1.4148	149.7	0.646	2.13	1/248	1/7086
INDEL	Thyroid	ZNF407_L1973Ffs*26	HLA-A31:01	IFKPLGGWSR	0.9906	0.9386	0.1498	29.6	0.2321	2.13	1/248	1/7086
INDEL	Thyroid	ZNF407_L1973Ffs*26	HLA-A31:01	EIFKPLGGWSR	0.9904	0.943	0.0919	431.2	1.9194	2.13	1/248	1/7086
INDEL	Thyroid	METTL8_F173Nfs*22	HLA-B35:05	LVAMPLSGY	0.7771	0.7012	0.5512	328.1	0.6651	2.48	1/248	1/7086
INDEL	Thyroid	PURA_R111Qfs*90	HLA-B15:01	FQRLPGRLH	0.9844	0.9232	0.1915	360.8	1.3993	13.78	1/248	1/7086
INDEL	Thyroid	MAPKBP1_D1238Mfs*97	HLA-C03:04	GSLPPAMAV	0.9882	0.9827	0.2712	257	0.6595	5.3	1/248	1/7086
INDEL	Thyroid	MAPKBP1_D1238Mfs*97	HLA-C02:06	GSLPPAMAV	0.7848	0.9782	0.267	482.6	0.182	5.3	1/248	1/7086
INDEL	Thyroid	MAPKBP1_D1238Mfs*97	HLA-A02:01	RTWAWWLNL	0.9137	0.7925	0.9595	92.9	1.0102	5.3	2/248	2/7086
INDEL	Thyroid	MAPKBP1_D1238Mfs*97	HLA-A02:01	RTWAWWLNL	0.9137	0.7925	0.9595	92.9	1.0102	5.3	2/248	2/7086
INDEL	Thyroid	MAPKBP1_D1238Mfs*97	HLA-C03:04	WAWWLNLKL	0.9875	0.997	1.3951	210.9	0.5827	5.3	1/248	1/7086
INDEL	Thyroid	MAPKBP1_D1238Mfs*97	HLA-C03:04	ASWPCPAGL	0.9944	0.9933	0.5982	362	0.8056	5.3	1/248	1/7086
INDEL	Thyroid	MAPKBP1_D1238Mfs*97	HLA-C03:04	SPNHCLTVL	0.9447	0.9778	0.4675	462.7	0.955	5.3	1/248	1/7086
INDEL	Thyroid	MAPKBP1_D1238Mfs*97	HLA-A02:01	TVLPWLHSL	0.9268	0.703	0.0109	53	0.6608	5.3	2/248	2/7086
INDEL	Thyroid	MAPKBP1_D1238Mfs*97	HLA-A02:01	TVLPWLHSL	0.9268	0.703	0.0109	53	0.6608	5.3	2/248	2/7086
INDEL	Thyroid	MAPKBP1_D1238Mfs*97	HLA-C03:04	TVLPWLHSL	0.9994	0.9968	0.0412	88.2	0.3342	5.3	1/248	1/7086
INDEL	Thyroid	MAPKBP1_D1238Mfs*97	HLA-A02:01	VLPWLHSLL	0.9449	0.6269	0.9226	204.8	1.6712	5.3	2/248	2/7086
INDEL	Thyroid	MAPKBP1_D1238Mfs*97	HLA-A02:01	VLPWLHSLL	0.9449	0.6269	0.9226	204.8	1.6712	5.3	2/248	2/7086
INDEL	Thyroid	MAPKBP1_D1238Mfs*97	HLA-A02:01	GLGSLPPAMAV	0.9787	0.7127	0.834	158.1	1.4278	5.3	2/248	2/7086
INDEL	Thyroid	MAPKBP1_D1238Mfs*97	HLA-A02:01	GLGSLPPAMAV	0.9787	0.7127	0.834	158.1	1.4278	5.3	2/248	2/7086
INDEL	Thyroid	CUEDC1_S94Afs*153	HLA-A02:01	GLWNLIARM	0.9335	0.6103	0.0808	48.9	0.6181	12.28	1/248	1/7086
INDEL	Thyroid	CUEDC1_S94Afs*153	HLA-A02:01	WLPRLRLPV	0.9373	0.5739	0.6929	204.6	1.6703	12.28	1/248	1/7086
INDEL	Thyroid	CUEDC1_S94Afs*153	HLA-A02:01	TLGAPSLGV	0.9484	0.7265	0.4769	149.4	1.3775	12.28	1/248	1/7086
INDEL	Thyroid	CUEDC1_S94Afs*153	HLA-B44:03	VERDVHLPW	0.9987	0.953	0.3028	79.3	0.0941	12.28	1/248	1/7086
INDEL	Thyroid	ABHD16A_Y73Ffs*79	HLA-B08:01	FLSLRLLL	0.9997	0.7373	0.1886	68.5	0.1194	5.58	1/248	1/7086
INDEL	Thyroid	ABHD16A_Y73Ffs*79	HLA-B08:01	LPPRHWPL	0.9937	0.8265	0.8585	28.7	0.0483	5.58	1/248	1/7086
INDEL	Thyroid	ABHD16A_Y73Ffs*79	HLA-B07:02	LPPRHWPL	0.9985	0.7176	0.8108	258.3	0.5609	5.58	1/248	1/7086
INDEL	Thyroid	ABHD16A_Y73Ffs*79	HLA-B08:01	VPAVHHHL	0.9924	0.7135	0.3542	331.5	0.5434	5.58	1/248	1/7086
INDEL	Thyroid	ABHD16A_Y73Ffs*79	HLA-B08:01	FLSLRLLLL	0.9958	0.7833	0.2025	47.7	0.0813	5.58	1/248	1/7086
INDEL	Thyroid	ABHD16A_Y73Ffs*79	HLA-B08:01	GLPPRHWPL	0.9065	0.7927	0.9226	181.1	0.3207	5.58	1/248	1/7086
INDEL	Thyroid	INPP5K_N254del	HLA-C14:02	TYKFDRNSDY	0.6386	0.8767	1.2269	356.7	0.9996	64.61	1/248	1/7086
INDEL	Thyroid	EPRS_K1354Tfs*18	HLA-B35:01	FPLDLKLGH	0.9927	0.7489	0.3124	111.8	0.3432	56.65	1/248	1/7086
INDEL	Thyroid	GOLGA4_E1030Lfs*41	HLA-C05:01	FIDENSMM	1	0.9377	0.0465	220.3	0.0995	11.5	1/248	1/7086
INDEL	Thyroid	GOLGA4_E1030Lfs*41	HLA-B35:01	FIDENSMMSY	0.9742	0.8482	0.0835	96.6	0.3117	11.5	1/248	1/7086
INDEL	Thyroid	UBN2_L999Wfs*16	HLA-B35:01	HPWFLGQY	0.9935	0.8655	0.3268	360.2	0.7129	4.11	1/248	1/7086
INDEL	Thyroid	UBN2_L999Wfs*16	HLA-A02:01	YLAPLPPV	0.9995	0.8002	0.7172	11.4	0.1355	4.11	1/248	2/7086
INDEL	Thyroid	UBN2_L999Wfs*16	HLA-B35:01	HPWFLGQYL	0.9866	0.8632	0.1581	41.2	0.1597	4.11	1/248	1/7086
INDEL	Thyroid	UBN2_L999Wfs*16	HLA-A02:01	FLGQYLAPL	0.9944	0.7524	0.1609	3.9	0.0177	4.11	1/248	2/7086
INDEL	Thyroid	UBN2_L999Wfs*16	HLA-A02:01	YLAPLPPVT	0.9935	0.8168	0.2543	55.8	0.6885	4.11	1/248	2/7086
INDEL	Thyroid	UBN2_L999Wfs*16	HLA-A02:01	YLAPLPPVTI	0.9984	0.794	0.0396	21.1	0.2882	4.11	1/248	2/7086
INDEL	Thyroid	ITGBL1_C299Vfs*108	HLA-A02:01	CLALGGVNV	0.9195	0.8747	1.0781	156	1.4167	1.08	1/248	1/7086
INDEL	Thyroid	ITGBL1_C299Vfs*108	HLA-A02:01	ALGGVNVNV	0.9915	0.8507	0.0558	31.6	0.4226	1.08	1/248	1/7086
INDEL	Thyroid	ITGBL1_C299Vfs*108	HLA-A02:01	RLVSVMIAA	0.9788	0.597	0.2151	57	0.6999	1.08	1/248	1/7086
INDEL	Thyroid	ITGBL1_C299Vfs*108	HLA-A02:01	LVSVMIAAV	0.9603	0.7851	0.8065	141	1.3218	1.08	1/248	1/7086
INDEL	Thyroid	ITGBL1_C299Vfs*108	HLA-B35:01	MIAAVKTSM	0.9788	0.95	0.8859	93.7	0.3052	1.08	1/248	1/7086
INDEL	Thyroid	ITGBL1_C299Vfs*108	HLA-A02:01	LALGGVNVNV	0.9688	0.8442	1.2465	156.6	1.42	1.08	1/248	1/7086
INDEL	Thyroid	ITGBL1_C299Vfs*108	HLA-A02:01	RLVSVMIAAV	0.9936	0.6875	0.3386	31.3	0.4191	1.08	1/248	1/7086
INDEL	Thyroid	ITGBL1_C299Vfs*108	HLA-A02:01	MIAAVKTSMV	0.9587	0.5735	1.9202	161.2	1.4443	1.08	1/248	1/7086
INDEL	Thyroid	ITGBL1_C299Vfs*108	HLA-A02:01	SMVWSVEATA	0.8802	0.5301	1.4254	172.4	1.5006	1.08	1/248	1/7086
INDEL	Thyroid	MYO9A_F1412Vfs*20	HLA-B35:01	SVSSFQIVY	0.9688	0.6806	0.0441	52	0.2016	2.98	1/248	1/7086
INDEL	Thyroid	APOBR_M756delinsIP	HLA-B35:01	IPGGDVVPH	0.9149	0.6888	0.891	323.6	0.6701	14.17	1/248	1/7086
INDEL	Thyroid	DNAJA2_F52delinsSTLI	HLA-B35:01	EISSTLIAY	0.9006	0.7837	0.2213	22.7	0.0928	29.17	1/248	1/7086
INDEL	Thyroid	ZNF763_C230Wfs*170	HLA-B35:01	NPLVILLPI	0.8326	0.6848	1.8135	407.8	0.774	1.43	1/248	1/7086
INDEL	Thyroid	ZNF763_C230Wfs*170	HLA-B35:01	LVILLPIEY	0.9723	0.7646	0.276	86.4	0.2882	1.43	1/248	1/7086
INDEL	Thyroid	ZNF763_C230Wfs*170	HLA-B35:01	LPIEYMKEL	0.9956	0.8516	0.037	56.5	0.214	1.43	1/248	1/7086
INDEL	Thyroid	ZNF763_C230Wfs*170	HLA-A02:01	TLEKSLMNV	0.9612	0.7792	0.5904	133.9	1.2766	1.43	1/248	1/7086
INDEL	Thyroid	ZNF763_C230Wfs*170	HLA-A02:01	TLGESHMNV	0.9859	0.8032	0.4263	34.9	0.4623	1.43	1/248	1/7086
INDEL	Thyroid	ZNF763_C230Wfs*170	HLA-B35:01	NPSVGVIPF	0.9947	0.6593	0.3753	7	0.0232	1.43	1/248	1/7086
INDEL	Thyroid	ZNF763_C230Wfs*170	HLA-B35:01	IPFKYMKEL	0.9544	0.7987	0.0717	392.6	0.7554	1.43	1/248	1/7086
INDEL	Thyroid	ZNF763_C230Wfs*170	HLA-C05:01	FVDMKGPTL	1	0.9764	0.0481	20.7	0.0096	1.43	1/248	1/7086
INDEL	Thyroid	ZNF763_C230Wfs*170	HLA-A02:01	LTLEKSLMNV	0.9809	0.7336	1.0341	197.4	1.6325	1.43	1/248	1/7086
INDEL	Thyroid	ZNF763_C230Wfs*170	HLA-B35:01	NPLVILLPIEY	0.9971	0.7247	0.9574	336.4	0.6845	1.43	1/248	1/7086
INDEL	Thyroid	ZNF763_C230Wfs*170	HLA-B35:01	NPSVGVIPFKY	0.9931	0.6092	0.897	363.5	0.7175	1.43	1/248	1/7086
INDEL	Thyroid	HUWE1_T3501Hfs*32	HLA-A02:01	LLHPPLSLL	0.9778	0.5757	0.2543	107.2	1.1041	27.95	1/248	1/7086
INDEL	Thyroid	HUWE1_T3501Hfs*32	HLA-A02:01	SLLLQPWLL	0.9401	0.8965	0.0558	14.5	0.1782	27.95	1/248	1/7086
INDEL	Thyroid	HUWE1_T3501Hfs*32	HLA-A03:01	LLQPWLLPR	0.9565	0.7625	0.3987	350.1	0.9507	27.95	1/248	1/7086
INDEL	Thyroid	HUWE1_T3501Hfs*32	HLA-B35:01	QPWLLPRLF	0.9504	0.9453	0.1182	151.7	0.4119	27.95	1/248	1/7086
INDEL	Thyroid	HUWE1_T3501Hfs*32	HLA-A02:01	WLLPRLFPP	0.8237	0.7292	1.3915	83	0.9337	27.95	1/248	1/7086
INDEL	Thyroid	HUWE1_T3501Hfs*32	HLA-A02:01	LLPRLFPPL	0.9824	0.7493	0.2089	40.8	0.5292	27.95	1/248	1/7086
INDEL	Thyroid	HUWE1_T3501Hfs*32	HLA-A02:01	LLHPPLSLLL	0.9734	0.5242	1.2561	73.2	0.8539	27.95	1/248	1/7086
INDEL	Thyroid	HUWE1_T3501Hfs*32	HLA-A03:01	LLLQPWLLPR	0.955	0.7312	1.7953	299.4	0.8503	27.95	1/248	1/7086
INDEL	Thyroid	HUWE1_T3501Hfs*32	HLA-A02:01	LLQPWLLPRL	0.9771	0.8181	0.4916	65.7	0.7893	27.95	1/248	1/7086
INDEL	Thyroid	HUWE1_T3501Hfs*32	HLA-A02:01	WLLPRLFPPL	0.9909	0.6885	0.5213	10.5	0.124	27.95	1/248	1/7086
INDEL	Thyroid	APAF1_K1200Sfs*34	HLA-A02:01	YISGGTLSL	0.9682	0.556	0.1514	66.1	0.7928	3.31	1/248	1/7086
INDEL	Thyroid	APAF1_K1200Sfs*34	HLA-A02:01	ILRKYTCPL	0.7586	0.7936	1.4148	198.2	1.6368	3.31	1/248	1/7086
INDEL	Thyroid	APAF1_K1200Sfs*34	HLA-B08:01	ILRKYTCPL	0.9923	0.9172	0.6038	12.4	0.0114	3.31	1/248	1/7086
INDEL	Thyroid	APAF1_K1200Sfs*34	HLA-B15:01	TQMEPILRKY	0.9999	0.7502	0.0979	34.6	0.1671	3.31	1/248	1/7086
INDEL	Thyroid	COG8_H480Ifs*31	HLA-A03:01	RLPSAAGSK	0.9958	0.7899	0.4753	67.9	0.2568	14.97	2/248	2/7086
INDEL	Thyroid	COG8_H480Ifs*31	HLA-A03:01	RLPSAAGSK	0.9958	0.7899	0.4753	67.9	0.2568	14.97	2/248	2/7086
INDEL	Thyroid	ZNF544_M143_V144delinsI	HLA-B15:03	FILTSERLF	0.8957	0.8519	1.4522	131	1.685	6.76	1/248	1/7086
INDEL	Thyroid	BRWD3_V1035Cfs*23	HLA-B35:01	MPDVIDFLCY	0.9973	0.8584	0.1761	10.6	0.0392	1.24	1/248	1/7086
INDEL	Thyroid	GTPBP4_V114Dfs*52	HLA-B40:01	QEAEAEFGV	0.8667	0.6642	0.6875	218	0.4281	17.7	1/248	1/7086
INDEL	Thyroid	GTPBP4_V114Dfs*52	HLA-C03:04	ASASAFIPF	0.9681	0.9899	0.9336	62.2	0.2542	17.7	1/248	1/7086
INDEL	Thyroid	GTPBP4_V114Dfs*52	HLA-B40:01	AEFGVFGASA	0.9552	0.8943	0.0583	480.4	0.6771	17.7	1/248	1/7086
INDEL	Thyroid	SENP2_H436Mfs*11	HLA-C12:03	LMYSVLSSI	0.9854	0.9629	1.9129	56.9	0.2591	7.18	1/248	1/7086
INDEL	Thyroid	ARID2_Q1575Sfs*51	HLA-C07:01	YRMWSRRTL	0.999	0.6949	0.0601	12.7	0.0071	4.46	1/248	1/7086
INDEL	Thyroid	ARID2_Q1575Sfs*51	HLA-A02:01	RMWSRRTLL	0.9069	0.6103	0.3028	77.1	0.885	4.46	1/248	1/7086
INDEL	Thyroid	ARID2_Q1575Sfs*51	HLA-A02:01	TLLCHLHQL	0.9928	0.5387	0.1098	7.6	0.0762	4.46	1/248	1/7086
INDEL	Thyroid	ARID2_Q1575Sfs*51	HLA-B08:01	TLLCHLHQL	0.8278	0.8238	0.4883	76.1	0.1322	4.46	1/248	1/7086
INDEL	Thyroid	ARID2_Q1575Sfs*51	HLA-B08:01	QLYKCRASL	0.9961	0.7121	0.5868	188.9	0.3351	4.46	1/248	1/7086
INDEL	Thyroid	ARID2_Q1575Sfs*51	HLA-A02:01	TVLSLLHSV	0.9853	0.6887	0.0062	26.1	0.3566	4.46	1/248	1/7086
INDEL	Thyroid	ARID2_Q1575Sfs*51	HLA-A02:01	SLLHSVDPV	0.9946	0.6334	0.1898	5.3	0.0409	4.46	1/248	1/7086
INDEL	Thyroid	ARID2_Q1575Sfs*51	HLA-C07:01	YRMWSRRTLL	0.9992	0.6492	0.2841	35.4	0.01	4.46	1/248	1/7086
INDEL	Thyroid	ARID2_Q1575Sfs*51	HLA-C06:02	YRMWSRRTLL	0.9258	0.987	0.7399	40.1	0.0102	4.46	1/248	1/7086
INDEL	Thyroid	ARID2_Q1575Sfs*51	HLA-A02:01	LLHSVDPVSL	0.9044	0.7942	0.2352	233.1	1.8107	4.46	1/248	1/7086
INDEL	Thyroid	MAP1A_S1004Rfs*55	HLA-B08:01	SPQWKKSL	0.9943	0.54	0.4599	155.1	0.2763	1.1	1/248	1/7086
INDEL	Thyroid	MAP1A_S1004Rfs*55	HLA-B08:01	QVWAKKMLL	0.9884	0.6903	0.4902	378	0.6021	1.1	1/248	1/7086
INDEL	Thyroid	MAP1A_S1004Rfs*55	HLA-C07:01	LRRQSSQGL	0.8557	0.6066	0.8515	346.6	0.1242	1.1	1/248	1/7086
INDEL	Thyroid	MAP1A_S1004Rfs*55	HLA-C07:01	FRRQTPGETL	0.9859	0.8145	0.4113	341.8	0.1227	1.1	1/248	1/7086
INDEL	Thyroid	MAP1A_S1004Rfs*55	HLA-C06:02	FRRQTPGETL	0.9682	0.991	0.678	346.8	0.118	1.1	1/248	1/7086
INDEL	Thyroid	PSMD8_F258Sfs*42	HLA-C03:04	SSLTSCSTL	0.9978	0.9926	0.6949	127.3	0.4226	60.32	1/248	1/7086
INDEL	Thyroid	PSMD8_F258Sfs*42	HLA-C03:04	STLSGMRSL	0.9985	0.987	0.3268	66	0.2677	60.32	1/248	1/7086
INDEL	Thyroid	DHX30_R223Gfs*7	HLA-B07:02	APLRDSGGV	0.9931	0.562	1.4904	481.5	0.8123	26.13	1/248	1/7086
INDEL	Thyroid	DHX30_R223Gfs*7	HLA-B07:02	APLRDSGGVPL	0.9999	0.7515	0.367	58.4	0.194	26.13	1/248	1/7086
INDEL	Thyroid	CLUH_P410Qfs*130	HLA-B07:02	RPRPLQGL	0.9997	0.7459	0.2102	11.9	0.0332	24.95	1/248	1/7086
INDEL	Thyroid	CLUH_P410Qfs*130	HLA-B07:02	HPRHPGAGP	0.9967	0.7424	0.4438	257.9	0.5603	24.95	1/248	1/7086
INDEL	Thyroid	CLUH_P410Qfs*130	HLA-B07:02	QPGLRRPRPL	0.9978	0.5994	0.5924	78	0.2446	24.95	1/248	1/7086
INDEL	Thyroid	CLUH_P410Qfs*130	HLA-B07:02	LPRLPGHGPV	0.9979	0.5066	0.3698	7.7	0.0146	24.95	1/248	1/7086
INDEL	Thyroid	CLUH_P410Qfs*130	HLA-B07:02	HPRHPGAGPG	0.995	0.5847	0.9381	117.9	0.334	24.95	1/248	1/7086
INDEL	Thyroid	CLUH_P410Qfs*130	HLA-B07:02	TPAVPGAAGA	0.9835	0.678	1.0445	196.7	0.4668	24.95	1/248	1/7086
INDEL	Thyroid	CLUH_P410Qfs*130	HLA-B07:02	HPRHPGAGPGA	0.9999	0.7793	0.2183	253.9	0.5543	24.95	1/248	1/7086
INDEL	Thyroid	ATP6V1B2_E502_Y504dup	HLA-B15:01	STLSEFYEF	0.9308	0.9623	0.9642	330.4	1.3229	82.76	1/248	1/7086
INDEL	Thyroid	ATP6V1B2_E502_Y504dup	HLA-B15:01	TLSEFYEFY	0.9956	0.9441	0.3367	314.7	1.2797	82.76	1/248	1/7086
INDEL	Thyroid	TG_S1977Yfs*37	HLA-C12:03	GAMRTHAAL	0.9966	0.9806	0.5619	82.8	0.3809	1720.73	1/248	1/7086
INDEL	Thyroid	TG_S1977Yfs*37	HLA-B35:01	LPFQKLMGIY	0.9978	0.6971	0.1855	51.7	0.2007	1720.73	1/248	1/7086
INDEL	Thyroid	TG_S1977Yfs*37	HLA-A02:01	NLFLMGSLNV	0.9823	0.5323	0.9814	52.8	0.6593	1720.73	1/248	1/7086
INDEL	Thyroid	RAD54L2_E902Rfs*19	HLA-B08:01	TLLRRSQL	0.9992	0.6325	0.4646	31.9	0.0532	6.65	1/248	1/7086
INDEL	Thyroid	RAD54L2_E902Rfs*19	HLA-B08:01	CTLLRRSQL	0.9857	0.6302	0.9275	81.7	0.1441	6.65	1/248	1/7086
INDEL	Thyroid	RNF128_V211Rfs*42	HLA-B08:01	SIFFRFCVL	0.9857	0.5159	0.4563	13.6	0.0133	122.68	1/248	1/7086
INDEL	Thyroid	SETD2_E2215Nfs*33	HLA-B35:02	VPSMWPRVM	0.7992	0.9623	0.7986	470.5	0.1219	34.96	1/248	1/7086
INDEL	Thyroid	SETD2_E2215Nfs*33	HLA-B35:02	FPVPSMWPRVM	0.9886	0.9822	1.403	113	0.0359	34.96	1/248	1/7086
INDEL	Thyroid	GPATCH3_R37_E38insIG	HLA-A30:01	RSYFSQFRI	0.9795	0.8168	0.2573	51	0.266	22.59	1/248	1/7086
INDEL	Thyroid	GPATCH3_R37_E38insIG	HLA-A32:01	RSYFSQFRI	0.993	0.872	0.0299	20.4	0.0343	22.59	1/248	1/7086
INDEL	Thyroid	UTP11L_V151Gfs*16	HLA-B07:02	SPGASRQSL	0.9999	0.5544	0.0131	5.1	0.0091	27.75	1/248	1/7086
INDEL	Thyroid	ODF2L_K596_M597insFLFV	HLA-A32:01	KVAEEIEKF	0.9977	0.8816	0.0121	169	0.3008	15.8	1/248	1/7086
INDEL	Thyroid	HMCN1_V4343Mfs*6	HLA-A32:01	KAIGFMSWF	0.9911	0.9934	0.4048	53	0.0954	1.29	1/248	1/7086
INDEL	Thyroid	CENPF_A2697Mfs*31	HLA-A30:01	KVREEIMCT	0.9826	0.9082	1.4064	101.7	0.5068	1.11	1/248	1/7086
INDEL	Thyroid	CENPF_A2697Mfs*31	HLA-A32:01	TVLNISYGF	0.8965	0.6677	0.5512	30.6	0.0558	1.11	1/248	1/7086
INDEL	Thyroid	CENPF_A2697Mfs*31	HLA-A30:01	ISYGFMKLK	0.9928	0.8323	0.2352	46.5	0.2436	1.11	1/248	1/7086
INDEL	Thyroid	IARS2_C1002Ffs*31	HLA-A32:01	SSMCRSCQW	0.9897	0.9295	0.7881	298.2	0.4939	65.43	1/248	1/7086
INDEL	Thyroid	TAF5L_S114Tfs*20	HLA-A30:01	KTLHSGKFL	0.881	0.9472	0.6854	61.2	0.3142	12.82	1/248	1/7086
INDEL	Thyroid	UBXN2A_L124Ffs*26	HLA-C07:02	FYEACVPAL	0.5774	0.911	0.1734	253.8	0.1667	8.59	1/248	1/7086
INDEL	Thyroid	PPM1B_L410Vfs*9	HLA-C07:02	HRGNYRQVI	0.8013	0.9025	0.7638	477.2	0.3125	19.78	1/248	1/7086
INDEL	Thyroid	ALMS1_N2445_F2447delinsI	HLA-B13:02	SDVLLIPYV	0.9045	0.5496	0.9913	469.1	0.0742	4.53	1/248	1/7086
INDEL	Thyroid	ALMS1_N2445_F2447delinsI	HLA-A30:01	LLIPYVSPK	0.9715	0.7454	0.3639	422.4	1.7889	4.53	1/248	1/7086
INDEL	Thyroid	CLASP1_A1221Sfs*16	HLA-A30:01	GSKLPPLPL	0.9714	0.9714	0.8991	183.7	0.888	17.54	1/248	1/7086
INDEL	Thyroid	CLASP1_A1221Sfs*16	HLA-A30:01	PLRAGGVVK	0.6683	0.9424	1.9897	385.3	1.6548	17.54	1/248	1/7086
INDEL	Thyroid	SSFA2_G411Ffs*7	HLA-A32:01	KLGEESFLF	0.9889	0.9908	0.1688	35.6	0.0643	44.6	1/248	1/7086
INDEL	Thyroid	PGAP1_N229delinsIYYFFFH	HLA-A32:01	TVNNYWILI	0.9211	0.872	1.7731	177	0.315	4.11	1/248	1/7086
INDEL	Thyroid	PGAP1_N229delinsIYYFFFH	HLA-A30:01	IYYFFFHAR	0.8082	0.7496	0.7494	446.1	1.8714	4.11	1/248	1/7086
INDEL	Thyroid	PGAP1_N229delinsIYYFFFH	HLA-C07:02	FFHARHINL	0.5636	0.9708	0.2653	36.8	0.0143	4.11	1/248	1/7086
INDEL	Thyroid	PGAP1_N229delinsIYYFFFH	HLA-C06:02	FFHARHINL	0.9628	0.9956	0.3332	404.5	0.1346	4.11	1/248	1/7086
INDEL	Thyroid	PGAP1_N229delinsIYYFFFH	HLA-C07:02	FFFHARHINL	0.8867	0.9684	0.9173	462.7	0.3013	4.11	1/248	1/7086
INDEL	Thyroid	PGAP1_N229delinsIYYFFFH	HLA-B07:02	HARHINLTTL	0.9863	0.6077	0.8931	229.5	0.5161	4.11	1/248	1/7086
INDEL	Thyroid	DNAJC13_F854delinsLTFINKS	HLA-A32:01	RSYEFLTF	0.9984	0.9934	0.5399	162.6	0.2901	15.36	1/248	1/7086
INDEL	Thyroid	DNAJC13_F854delinsLTFINKS	HLA-A30:01	SIKRSYEFL	0.9491	0.9576	1.014	129.3	0.6338	15.36	1/248	1/7086
INDEL	Thyroid	DNAJC13_F854delinsLTFINKS	HLA-C07:02	KRSYEFLTF	0.9282	0.9872	0.1302	298.1	0.1963	15.36	1/248	1/7086
INDEL	Thyroid	DNAJC13_F854delinsLTFINKS	HLA-A30:01	RSYEFLTFI	0.9783	0.9562	0.0932	46.8	0.2451	15.36	1/248	1/7086
INDEL	Thyroid	DNAJC13_F854delinsLTFINKS	HLA-A32:01	RSYEFLTFI	0.9947	0.9874	0.0142	16.3	0.0265	15.36	1/248	1/7086
INDEL	Thyroid	DNAJC13_F854delinsLTFINKS	HLA-B13:02	RSYEFLTFI	0.8075	0.5305	0.0255	252.5	0.019	15.36	1/248	1/7086
INDEL	Thyroid	DNAJC13_F854delinsLTFINKS	HLA-C07:02	TFINKSNEL	0.7727	0.8763	0.0201	321.2	0.2125	15.36	1/248	1/7086
INDEL	Thyroid	DNAJC13_F854delinsLTFINKS	HLA-A32:01	KSNELYHRF	0.9982	0.8782	0.0344	55.8	0.1023	15.36	1/248	1/7086
INDEL	Thyroid	DNAJC13_F854delinsLTFINKS	HLA-A30:01	RSYEFLTFINK	0.9964	0.9066	0.2367	78.5	0.3937	15.36	1/248	1/7086
INDEL	Thyroid	ZBTB38_R264Yfs*34	HLA-A30:01	AAKPKTCYY	0.8874	0.6336	0.2071	132.8	0.6516	30.85	1/248	1/7086
INDEL	Thyroid	ZBTB38_R264Yfs*34	HLA-A30:01	CYYYFPEAK	0.7867	0.7848	0.5038	314.4	1.4022	30.85	1/248	1/7086
INDEL	Thyroid	ZBTB38_R264Yfs*34	HLA-A32:01	ILHTTGFGF	0.8904	0.9292	0.4277	289.1	0.4821	30.85	1/248	1/7086
INDEL	Thyroid	ZBTB38_R264Yfs*34	HLA-A30:01	TGFGFSHRK	0.9574	0.8162	0.9549	121.7	0.5953	30.85	1/248	1/7086
INDEL	Thyroid	ZBTB38_R264Yfs*34	HLA-C07:02	YYFPEAKDIL	0.8988	0.9576	0.1212	322.9	0.2137	30.85	1/248	1/7086
INDEL	Thyroid	SRP72_I598Mfs*29	HLA-B07:02	GPREQLQEL	0.9997	0.5599	0.1112	17	0.058	43.64	1/248	1/7086
INDEL	Thyroid	SRP72_I598Mfs*29	HLA-A32:01	QLQELHLNW	0.9878	0.9766	0.2396	121.2	0.2079	43.64	1/248	1/7086
INDEL	Thyroid	SRP72_I598Mfs*29	HLA-A32:01	HLNWMPVKL	0.8856	0.9564	0.5128	412.8	0.6477	43.64	1/248	1/7086
INDEL	Thyroid	MOB1B_T12_F13insPTN	HLA-A30:01	SSKTPTNFK	0.9985	0.6604	0.2009	6.9	0.0147	20.27	1/248	1/7086
INDEL	Thyroid	MOB1B_T12_F13insPTN	HLA-A30:01	KTPTNFKPK	0.992	0.5988	0.2868	27.1	0.1224	20.27	1/248	1/7086
INDEL	Thyroid	MOB1B_T12_F13insPTN	HLA-A30:01	RSSKTPTNFK	0.9987	0.8371	0.6392	9.9	0.0261	20.27	1/248	1/7086
INDEL	Thyroid	MOB1B_T12_F13insPTN	HLA-A30:01	KTPTNFKPKK	0.9912	0.5889	0.704	108	0.5363	20.27	1/248	1/7086
INDEL	Thyroid	MOB1B_T12_F13insPTN	HLA-A30:01	SSKTPTNFKPK	0.9987	0.6905	0.5038	113.2	0.5595	20.27	1/248	1/7086
INDEL	Thyroid	MOB1B_K14Lfs*5	HLA-A30:01	GSRSSKTFL	0.9538	0.9035	0.9226	33.6	0.1736	20.27	1/248	1/7086
INDEL	Thyroid	ANKRD17_K1794Nfs*12	HLA-A32:01	LINALINGF	0.9058	0.9121	1.5614	390.3	0.6162	19.14	1/248	1/7086
INDEL	Thyroid	SH3D19_L145Ifs*68	HLA-A32:01	FLRKPHLPF	0.7501	0.9689	0.7151	469.4	0.7215	28.81	1/248	1/7086
INDEL	Thyroid	GFM2_I598_E599insRKKT	HLA-B07:02	RPIRKKTET	0.9876	0.5202	0.713	201.5	0.474	15.06	1/248	1/7086
INDEL	Thyroid	VCAN_V1792Sfs*10	HLA-A30:01	STPSLSLQK	0.9302	0.5222	0.3152	372.2	1.6046	4.51	1/248	1/7086
INDEL	Thyroid	TCERG1_E886Nfs*4	HLA-A30:01	RSEQTKNSK	0.9432	0.7609	1.5795	267.1	1.2226	13.65	1/248	1/7086
INDEL	Thyroid	TCERG1_E886Nfs*4	HLA-A30:01	KARSEQTKNSK	0.9982	0.7703	1.1369	94.3	0.4726	13.65	1/248	1/7086
INDEL	Thyroid	FAT2_G617_V618insYVLKE	HLA-A32:01	YVLKEVISL	0.8945	0.8362	0.2526	465.6	0.7165	1.5	1/248	1/7086
INDEL	Thyroid	FAT2_G617_V618insYVLKE	HLA-A30:01	VLKEVISLK	0.9933	0.7787	0.0583	145.3	0.7117	1.5	1/248	1/7086
INDEL	Thyroid	UBLCP1_K51_G52insIDT	HLA-A32:01	KLLGLKVKI	0.9945	0.9299	0.1212	47.1	0.0841	33.03	1/248	1/7086
INDEL	Thyroid	ZNF184_N393Rfs*23	HLA-B07:02	RPSTGPQL	0.9991	0.5903	0.3639	34.7	0.1207	8.02	1/248	1/7086
INDEL	Thyroid	ZNF184_N393Rfs*23	HLA-A30:01	KTYKCRFFS	0.9835	0.7522	1.2592	15.6	0.0515	8.02	1/248	1/7086
INDEL	Thyroid	ZNF184_N393Rfs*23	HLA-B07:02	RPSTGPQLL	0.999	0.5173	0.148	26.7	0.0978	8.02	1/248	1/7086
INDEL	Thyroid	ZSCAN12_K504Nfs*74	HLA-A30:01	CGNLWRLLK	0.976	0.8818	1.221	280.3	1.2719	3.92	1/248	1/7086
INDEL	Thyroid	ZSCAN12_K504Nfs*74	HLA-C07:02	SRNIRESTL	0.8553	0.9601	0.0383	259.3	0.1701	3.92	1/248	1/7086
INDEL	Thyroid	ZSCAN12_K504Nfs*74	HLA-A30:01	SIRESTLGR	0.9891	0.6778	0.3806	290.9	1.3113	3.92	1/248	1/7086
INDEL	Thyroid	ZSCAN12_K504Nfs*74	HLA-A30:01	RSPTNVMSV	0.962	0.8629	0.7267	312.1	1.3935	3.92	1/248	1/7086
INDEL	Thyroid	ZSCAN12_K504Nfs*74	HLA-A30:01	RGRRPATRK	0.9946	0.8768	0.6252	18.1	0.07	3.92	1/248	1/7086
INDEL	Thyroid	ZSCAN12_K504Nfs*74	HLA-C07:02	RRPATRKYF	0.7615	0.9305	0.5128	296.8	0.1954	3.92	1/248	1/7086
INDEL	Thyroid	UBR2_T1449_M1450insFTFILIFFL	HLA-A32:01	HLVTFTFIL	0.7582	0.8864	1.6663	311.6	0.5125	19.91	1/248	1/7086
INDEL	Thyroid	UBR2_T1449_M1450insFTFILIFFL	HLA-A32:01	VTFTFILIF	0.8942	0.8765	0.6018	162.5	0.29	19.91	1/248	1/7086
INDEL	Thyroid	UBR2_T1449_M1450insFTFILIFFL	HLA-A32:01	FLMAHIIQI	0.9511	0.9767	0.033	117.6	0.1996	19.91	1/248	1/7086
INDEL	Thyroid	UBR2_T1449_M1450insFTFILIFFL	HLA-A32:01	LMAHIIQIL	0.9027	0.9766	0.5347	254.3	0.433	19.91	1/248	1/7086
INDEL	Thyroid	UBR2_T1449_M1450insFTFILIFFL	HLA-A32:01	HIFHLVTFTF	0.9883	0.8988	1.1421	23.9	0.0397	19.91	1/248	1/7086
INDEL	Thyroid	PTCHD4_R318delinsTG	HLA-A30:01	GTKENLPFK	0.9963	0.9121	0.0344	9.4	0.0244	22.41	1/248	1/7086
INDEL	Thyroid	PTCHD4_R318delinsTG	HLA-A30:01	RTGTKENLPFK	0.9974	0.9445	0.9014	33.7	0.1739	22.41	1/248	1/7086
INDEL	Thyroid	UBE2J1_S197Ffs*11	HLA-A30:01	SSGKTIFNK	0.9866	0.5932	0.296	285.8	1.2918	55.82	1/248	1/7086
INDEL	Thyroid	UBE2J1_S197Ffs*11	HLA-A30:01	SGKTIFNKK	0.9923	0.6516	0.241	52.7	0.2743	55.82	1/248	1/7086
INDEL	Thyroid	UBE2J1_S197Ffs*11	HLA-A30:01	KTIFNKKRK	0.9938	0.7515	0.585	74	0.3752	55.82	1/248	1/7086
INDEL	Thyroid	UBE2J1_S197Ffs*11	HLA-A30:01	SSGKTIFNKK	0.9894	0.6907	1.2334	97.2	0.486	55.82	1/248	1/7086
INDEL	Thyroid	TUBE1_E437delinsVSKLQ	HLA-A30:01	KLQSCFTEA	0.6623	0.9776	1.7038	438.1	1.8441	8	1/248	1/7086
INDEL	Thyroid	STX7_R235Sfs*31	HLA-A30:01	KSSFKIIIK	0.9972	0.681	0.0778	23.8	0.0992	9.76	1/248	1/7086
INDEL	Thyroid	STX7_R235Sfs*31	HLA-A30:01	SSFKIIIKK	0.998	0.656	0.0121	85.9	0.4312	9.76	1/248	1/7086
INDEL	Thyroid	STX7_R235Sfs*31	HLA-A32:01	ASSFLSLSL	0.9055	0.9512	1.1589	209.3	0.3665	9.76	1/248	1/7086
INDEL	Thyroid	STX7_R235Sfs*31	HLA-A30:01	RKSSFKIIIK	0.9376	0.7358	1.3768	168.2	0.8087	9.76	1/248	1/7086
INDEL	Thyroid	STX7_R235Sfs*31	HLA-A30:01	KSSFKIIIKK	0.9967	0.6654	0.3974	134.7	0.6615	9.76	1/248	1/7086
INDEL	Thyroid	STX7_S234_R235insN	HLA-A30:01	KSNRKTLCI	0.9856	0.7922	0.9735	125.6	0.6147	9.76	1/248	1/7086
INDEL	Thyroid	SHPRH_K1212Sfs*14	HLA-A32:01	KLVREAVSI	0.9776	0.9023	0.6333	78.8	0.1459	1.36	1/248	1/7086
INDEL	Thyroid	SHPRH_K1212Sfs*14	HLA-A30:01	LVREAVSIK	0.9934	0.8142	0.4061	22.6	0.0938	1.36	1/248	1/7086
INDEL	Thyroid	SHPRH_K1212Sfs*14	HLA-A30:01	KMKKPGGTSI	0.9742	0.9225	0.4438	179.9	0.8691	1.36	1/248	1/7086
INDEL	Thyroid	GCC1_E707Mfs*26	HLA-A30:01	AALQSHIMK	0.9786	0.8454	0.2089	120.3	0.5894	12.74	1/248	1/7086
INDEL	Thyroid	GCC1_E707Mfs*26	HLA-A30:01	RTSGTRAGR	0.9862	0.7519	0.8186	311.1	1.3899	12.74	1/248	1/7086
INDEL	Thyroid	GCC1_E707Mfs*26	HLA-A30:01	GTRAGREPI	0.9487	0.7931	1.3	34.2	0.1769	12.74	1/248	1/7086
INDEL	Thyroid	ESYT2_W158Gfs*13	HLA-A32:01	RACDLPAGF	0.9346	0.9895	0.262	453.9	0.7011	41.98	1/248	1/7086
INDEL	Thyroid	ESYT2_W158Gfs*13	HLA-A30:01	AGFIFQTLK	0.9529	0.8806	0.4456	66.7	0.3418	41.98	1/248	1/7086
INDEL	Thyroid	YWHAZ_S184Kfs*15	HLA-C07:02	FYYEILNKF	0.8114	0.8316	0.0062	96.4	0.0527	240.96	1/248	1/7086
INDEL	Thyroid	YWHAZ_S184Kfs*15	HLA-A30:01	SVFYYEILNK	0.9429	0.6319	0.3089	447	1.8744	240.96	1/248	1/7086
INDEL	Thyroid	RFK_K127Tfs*22	HLA-A30:01	VTRTFENQR	0.958	0.8026	0.5471	354.8	1.5464	25.63	1/248	1/7086
INDEL	Thyroid	RFK_K127Tfs*22	HLA-C07:02	QRRQFLPGF	0.9093	0.9241	0.6233	479.5	0.3142	25.63	1/248	1/7086
INDEL	Thyroid	RFK_K127Tfs*22	HLA-A32:01	RTFENQRRQF	0.9964	0.9017	0.0658	198.9	0.3509	25.63	1/248	1/7086
INDEL	Thyroid	RFK_K127Tfs*22	HLA-A30:01	RTFENQRRQFL	0.9823	0.8539	0.637	301.3	1.3523	25.63	1/248	1/7086
INDEL	Thyroid	DNAJC1_Q502delinsRSRE	HLA-A30:01	RSREKLLEL	0.9972	0.9618	0.0794	16.5	0.0582	58.12	1/248	1/7086
INDEL	Thyroid	USP54_S1439delinsWA	HLA-A32:01	HSFDWASNV	0.6704	0.9892	1.4358	393.3	0.6206	43.66	1/248	1/7086
INDEL	Thyroid	ALDH18A1_R128Afs*21	HLA-A32:01	KQRLAMRSF	0.9172	0.8977	0.5723	460.9	0.7104	71.07	1/248	1/7086
INDEL	Thyroid	ALDH18A1_R128Afs*21	HLA-A32:01	RLAMRSFCL	0.965	0.9691	0.4808	99.9	0.1735	71.07	1/248	1/7086
INDEL	Thyroid	ALDH18A1_R128Afs*21	HLA-A30:01	AMRSFCLRA	0.9187	0.9595	1.0445	62.3	0.3201	71.07	1/248	1/7086
INDEL	Thyroid	ALDH18A1_R128Afs*21	HLA-A30:01	RSFCLRACGR	0.9871	0.9358	1.9055	178.2	0.8609	71.07	1/248	1/7086
INDEL	Thyroid	PDZD8_I370delinsMKKE	HLA-A30:01	SIKTVELMK	0.9918	0.8152	0.3851	114	0.5631	8.59	1/248	1/7086
INDEL	Thyroid	PDZD8_I370delinsMKKE	HLA-A30:01	SIKTVELMKK	0.9909	0.8262	0.8127	316.5	1.4101	8.59	1/248	1/7086
INDEL	Thyroid	PDZD8_I370delinsMKKE	HLA-A30:01	RSSIKTVELMK	0.9967	0.9209	1.314	287.8	1.2992	8.59	1/248	1/7086
INDEL	Thyroid	COPB1_G596Tfs*34	HLA-A32:01	MATILHLTF	0.9728	0.8793	0.0686	162.3	0.2897	77.91	1/248	1/7086
INDEL	Thyroid	COPB1_G596Tfs*34	HLA-A32:01	ATILHLTFW	0.9928	0.9543	0.0267	163.2	0.2911	77.91	1/248	1/7086
INDEL	Thyroid	COPB1_G596Tfs*34	HLA-A32:01	LTFWENPLF	0.9349	0.9678	0.6854	202.1	0.3558	77.91	1/248	1/7086
INDEL	Thyroid	COPB1_G596Tfs*34	HLA-C07:02	TFWENPLFL	0.5666	0.9664	0.0383	100	0.0546	77.91	1/248	1/7086
INDEL	Thyroid	COPB1_G596Tfs*34	HLA-C07:02	LRSQLLMMM	0.9907	0.9604	0.6535	156.2	0.0946	77.91	1/248	1/7086
INDEL	Thyroid	COPB1_G596Tfs*34	HLA-A32:01	RSQLLMMMW	0.9958	0.9437	0.1336	70.4	0.1295	77.91	1/248	1/7086
INDEL	Thyroid	COPB1_G596Tfs*34	HLA-B13:02	SQLLMMMWI	0.5914	0.6152	0.7702	429	0.0607	77.91	1/248	1/7086
INDEL	Thyroid	COPB1_G596Tfs*34	HLA-A32:01	LLMMMWIEF	0.9098	0.9603	1.4566	233.2	0.3999	77.91	1/248	1/7086
INDEL	Thyroid	COPB1_G596Tfs*34	HLA-A32:01	LMATILHLTF	0.9869	0.8676	0.786	178.6	0.3178	77.91	1/248	1/7086
INDEL	Thyroid	ABTB2_T714Yfs*20	HLA-A30:01	RTRYRRPCT	0.9631	0.9004	1.2078	22.4	0.0928	6.45	1/248	1/7086
INDEL	Thyroid	ABTB2_T714Yfs*20	HLA-A30:01	RYRRPCTTA	0.9314	0.8245	1.4863	13.3	0.0416	6.45	1/248	1/7086
INDEL	Thyroid	ABTB2_T714Yfs*20	HLA-B07:02	YRRPCTTAL	0.7802	0.5258	0.585	433.8	0.7667	6.45	1/248	1/7086
INDEL	Thyroid	ABTB2_T714Yfs*20	HLA-C07:02	YRRPCTTAL	0.797	0.9209	0.1072	17.2	0.0085	6.45	1/248	1/7086
INDEL	Thyroid	ABTB2_T714Yfs*20	HLA-A32:01	TTALSTATW	0.9645	0.9819	0.0643	206.5	0.3624	6.45	1/248	1/7086
INDEL	Thyroid	ABTB2_T714Yfs*20	HLA-A32:01	STATWTSPW	0.951	0.9515	0.1609	17.3	0.0286	6.45	1/248	1/7086
INDEL	Thyroid	CPNE8_S427Ifs*27	HLA-A30:01	VARYAIFCK	0.9958	0.787	0.7514	25.6	0.112	7.46	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-A32:01	RTWLWPSF	0.9956	0.9884	0.8655	66.9	0.1228	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-A32:01	ITFEHIRTW	0.9954	0.9622	0.0037	21.8	0.0366	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-C07:02	IRTWLWPSF	0.8414	0.9576	0.7767	289.8	0.1907	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-A30:01	RTWLWPSFV	0.9778	0.9695	0.5491	90.6	0.4552	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-A32:01	RTWLWPSFV	0.9633	0.9888	0.4367	28.9	0.0532	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-A32:01	WLWPSFVHL	0.8698	0.9739	0.5583	430.1	0.6708	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-B13:02	SQTAAILYI	0.8976	0.5119	0.0045	267.5	0.0224	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-A32:01	AILYIQWSM	0.7076	0.9624	1.6762	81.8	0.1511	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-A32:01	MNFMRTMSI	0.5588	0.9757	0.8833	253.2	0.4313	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-B13:02	MNFMRTMSI	0.6533	0.7017	0.6655	376.1	0.0467	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-C07:02	MNFMRTMSI	0.9104	0.974	0.704	348	0.2306	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-C06:02	MNFMRTMSI	0.9841	0.9966	0.3427	177.4	0.0653	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-A30:01	RTMSIFPAC	0.8466	0.9667	1.3493	48.8	0.2555	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-A32:01	MSIFPACLL	0.6368	0.947	1.202	446.4	0.6918	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-A32:01	SIFPACLLM	0.8613	0.9519	0.8361	403.2	0.6345	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-C07:02	MRRSSCVVL	0.7792	0.9493	0.7945	106.2	0.0577	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-A30:01	RSSCVVLAV	0.9961	0.8832	0.2089	96.7	0.4838	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-A32:01	RSSCVVLAV	0.9523	0.9451	0.1688	163	0.2908	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-A30:01	SSCVVLAVK	0.9752	0.8656	0.7376	296	1.3315	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-A32:01	VVLAVKRSW	0.9639	0.9724	0.241	183	0.3252	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-A32:01	QTAAILYIQW	0.9884	0.9638	0.9621	319.7	0.5239	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-A30:01	RTMSIFPACL	0.9742	0.9436	1.1763	43.2	0.2265	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-A32:01	RTMSIFPACL	0.991	0.9746	0.5399	47.8	0.0851	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-A30:01	RSSCVVLAVK	0.9957	0.9066	0.3769	65.6	0.3364	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-A32:01	RTWLWPSFVHL	0.9954	0.9703	0.9889	377.2	0.5976	18.1	1/248	1/7086
INDEL	Thyroid	PDZRN4_M344Rfs*75	HLA-A32:01	RTMSIFPACLL	0.9928	0.9792	0.7683	166.6	0.2968	18.1	1/248	1/7086
INDEL	Thyroid	SENP1_Y270Ifs*35	HLA-A32:01	SVIFPIFLY	0.8182	0.848	0.1465	435.2	0.6775	7.93	1/248	2/7086
INDEL	Thyroid	XRCC6BP1_V138Sfs*41	HLA-B07:02	HCRAHSSSL	0.9803	0.6358	1.1792	148.5	0.3872	18.37	1/248	1/7086
INDEL	Thyroid	XRCC6BP1_V138Sfs*41	HLA-C07:02	WRAQRFELL	0.9772	0.9613	0.3956	49.2	0.0203	18.37	3/248	3/7086
INDEL	Thyroid	XRCC6BP1_V138Sfs*41	HLA-A30:01	AQRFELLTL	0.8697	0.9198	1.5614	483.3	1.9901	18.37	1/248	1/7086
INDEL	Thyroid	XRCC6BP1_V138Sfs*41	HLA-B13:02	AQRFELLTLV	0.8096	0.878	0.9942	196.5	0.0098	18.37	1/248	1/7086
INDEL	Thyroid	CEP290_I2286Kfs*8	HLA-A30:01	KLKELETDK	0.9839	0.9102	0.5347	398.9	1.7051	6.79	1/248	1/7086
INDEL	Thyroid	FREM2_R2241Gfs*38	HLA-A32:01	TLIGIYLQL	0.8795	0.9618	0.3753	359.9	0.5767	1.86	1/248	1/7086
INDEL	Thyroid	FREM2_R2241Gfs*38	HLA-A32:01	MLIRLLLNL	0.88	0.9082	0.4263	155.4	0.2779	1.86	1/248	1/7086
INDEL	Thyroid	DIS3_V855_R856insNSQ	HLA-C07:02	QRKNAIVVL	0.9646	0.9042	0.3514	355.4	0.2353	6.88	1/248	1/7086
INDEL	Thyroid	DAAM1_S848Hfs*21	HLA-A30:01	RQKHYPFAL	0.9824	0.5946	0.4311	192.6	0.9273	7	1/248	1/7086
INDEL	Thyroid	DAAM1_S848Hfs*21	HLA-A32:01	RQKHYPFAL	0.9726	0.7972	0.3769	129.2	0.2263	7	1/248	1/7086
INDEL	Thyroid	DAAM1_S848Hfs*21	HLA-A30:01	ALSHHYCGK	0.9417	0.8232	1.0192	306.5	1.3724	7	1/248	1/7086
INDEL	Thyroid	RBM25_H650Pfs*20	HLA-A30:01	KTHQINSNL	0.9843	0.798	0.3137	37.6	0.195	34.92	1/248	1/7086
INDEL	Thyroid	RBM25_H650Pfs*20	HLA-A32:01	KTHQINSNL	0.9749	0.8467	0.3495	155.1	0.2772	34.92	1/248	1/7086
INDEL	Thyroid	RBM25_H650Pfs*20	HLA-A30:01	KTHQINSNLR	0.9953	0.8362	0.9432	345.5	1.5148	34.92	1/248	1/7086
INDEL	Thyroid	KDM8_K152Sfs*63	HLA-A30:01	RATLHKESK	0.9863	0.9247	0.9814	98.6	0.4926	5.77	1/248	1/7086
INDEL	Thyroid	KDM8_K152Sfs*63	HLA-B07:02	VPPAFQGAV	0.9524	0.5586	0.9472	279.3	0.5904	5.77	1/248	1/7086
INDEL	Thyroid	KDM8_K152Sfs*63	HLA-B07:02	CPWLPPRATL	0.9971	0.5568	0.3577	19.4	0.0674	5.77	1/248	1/7086
INDEL	Thyroid	SPECC1_T289Lfs*78	HLA-A30:01	SIKKTYMEM	0.9038	0.7717	0.6556	114.5	0.565	3.66	1/248	1/7086
INDEL	Thyroid	SPECC1_T289Lfs*78	HLA-A32:01	QMLPTLSTL	0.807	0.9632	0.3235	113.7	0.1941	3.66	1/248	1/7086
INDEL	Thyroid	SPECC1_T289Lfs*78	HLA-B07:02	TPLRVQSVL	0.9993	0.5472	0.1112	18.7	0.0649	3.66	1/248	1/7086
INDEL	Thyroid	SPECC1_T289Lfs*78	HLA-C07:02	LRVQSVLLL	0.969	0.9512	0.267	87.6	0.0471	3.66	1/248	1/7086
INDEL	Thyroid	SPECC1_T289Lfs*78	HLA-A30:01	RVQSVLLLG	0.9283	0.8612	1.9978	145.7	0.7133	3.66	1/248	1/7086
INDEL	Thyroid	SPECC1_T289Lfs*78	HLA-A32:01	RQMLPTLSTL	0.974	0.9659	0.5002	75.8	0.1403	3.66	1/248	1/7086
INDEL	Thyroid	SPECC1_T289Lfs*78	HLA-B07:02	HPQGPCPPPV	0.9782	0.6912	0.5165	249.4	0.5476	3.66	1/248	1/7086
INDEL	Thyroid	SPECC1_T289Lfs*78	HLA-B07:02	GPCPPPVTPL	0.9992	0.5328	0.4232	384.1	0.7161	3.66	1/248	1/7086
INDEL	Thyroid	TEFM_S218_I219insESPI	HLA-A30:01	SSESPIIISK	0.8804	0.6395	1.5029	379.9	1.6341	5.98	1/248	1/7086
INDEL	Thyroid	KCNJ16_W85Yfs*28	HLA-A32:01	YILSYNVLW	0.9098	0.9202	0.5181	97.3	0.1705	199.72	1/248	1/7086
INDEL	Thyroid	KCNJ16_W85Yfs*28	HLA-A32:01	LSYNVLWRV	0.6721	0.9613	0.9663	397.3	0.6262	199.72	1/248	1/7086
INDEL	Thyroid	KCNJ16_W85Yfs*28	HLA-A32:01	LLAHSLSSW	0.9883	0.984	0.3168	197.1	0.3481	199.72	1/248	1/7086
INDEL	Thyroid	KCNJ16_W85Yfs*28	HLA-A30:01	SLSSWRSIK	0.9763	0.8041	0.6095	241.3	1.1229	199.72	1/248	1/7086
INDEL	Thyroid	WDR7_Y1169Lfs*36	HLA-A30:01	TSSTQHYPK	0.9836	0.7012	0.8951	137.2	0.6736	4.53	1/248	1/7086
INDEL	Thyroid	WDR7_S1170Kfs*36	HLA-A30:01	LTSGGSNYK	0.9426	0.9131	0.9993	243.1	1.1302	4.53	1/248	1/7086
INDEL	Thyroid	WDR7_S1170Kfs*36	HLA-A30:01	KSIAGQTYL	0.9406	0.7643	0.2464	97.8	0.4889	4.53	1/248	1/7086
INDEL	Thyroid	WDR7_S1170Kfs*36	HLA-A32:01	KSIAGQTYL	0.9735	0.6029	0.0979	213.3	0.3725	4.53	1/248	1/7086
INDEL	Thyroid	WDR7_S1170Kfs*36	HLA-A30:01	TSSTQHYPK	0.9836	0.7012	0.8951	137.2	0.6736	4.53	1/248	1/7086
INDEL	Thyroid	TICAM1_L655Ffs*38	HLA-A30:01	SLRPHPHPL	0.959	0.8137	0.3753	151.9	0.7403	23.17	1/248	1/7086
INDEL	Thyroid	TICAM1_L655Ffs*38	HLA-B07:02	RPHPHPLRA	0.9982	0.7558	0.0062	65.8	0.2136	23.17	1/248	1/7086
INDEL	Thyroid	TICAM1_L655Ffs*38	HLA-A30:01	RAQGCNPSL	0.6808	0.9008	0.6837	339.5	1.4937	23.17	1/248	1/7086
INDEL	Thyroid	TICAM1_L655Ffs*38	HLA-A32:01	STTHRWYSW	0.9861	0.9445	0.0932	50.6	0.0892	23.17	1/248	1/7086
INDEL	Thyroid	TICAM1_L655Ffs*38	HLA-A30:01	SLRPHPHPLR	0.9902	0.9063	0.8247	188.2	0.9088	23.17	1/248	1/7086
INDEL	Thyroid	TICAM1_L655Ffs*38	HLA-B07:02	SPQPAAFPQSF	0.9841	0.506	0.2138	431.9	0.7649	23.17	1/248	1/7086
INDEL	Thyroid	TICAM1_L655Ffs*38	HLA-B07:02	QPSLRPHPHPL	0.9999	0.5012	0.4675	72.6	0.2314	23.17	1/248	1/7086
INDEL	Thyroid	ZNF85_N160Tfs*6	HLA-A32:01	KVAHKFSTF	0.9979	0.9661	0.0267	16.4	0.0267	5.27	1/248	1/7086
INDEL	Thyroid	ZNF85_N160Tfs*6	HLA-A30:01	VAHKFSTFK	0.9944	0.8823	0.4382	13.3	0.0415	5.27	1/248	1/7086
INDEL	Thyroid	ZNF85_N160Tfs*6	HLA-A30:01	KVAHKFSTFK	0.9992	0.8684	0.4529	11.4	0.0321	5.27	1/248	1/7086
INDEL	Thyroid	ZNF85_F519delinsLPH	HLA-A30:01	KALPHNQSSK	0.9929	0.8896	0.4698	41.5	0.2167	5.27	1/248	1/7086
INDEL	Thyroid	KIAA0355_S927_M928insLLK	HLA-A32:01	SLFSLLKMF	0.9639	0.9691	0.5815	129.5	0.2271	14.31	1/248	1/7086
INDEL	Thyroid	KIAA0355_S927_M928insLLK	HLA-A32:01	KMFSGPDLV	0.7952	0.9495	0.3529	44.7	0.0804	14.31	1/248	1/7086
INDEL	Thyroid	ZNF781_N29Vfs*13	HLA-B13:02	TQYQISHAV	0.9703	0.8702	0.0523	329.8	0.0365	1.52	1/248	1/7086
INDEL	Thyroid	ZNF781_N29Vfs*13	HLA-A32:01	YQISHAVNF	0.8844	0.9411	0.1435	286.3	0.4784	1.52	1/248	1/7086
INDEL	Thyroid	ZNF781_N29Vfs*13	HLA-A32:01	HAVNFPMSI	0.9415	0.9739	0.3987	237.2	0.4063	1.52	1/248	1/7086
INDEL	Thyroid	ZNF781_N29Vfs*13	HLA-A30:01	AVNFPMSIK	0.9754	0.8442	0.0356	86.4	0.4338	1.52	1/248	1/7086
INDEL	Thyroid	ZNF781_N29Vfs*13	HLA-A30:01	HAVNFPMSIK	0.9803	0.8601	0.8677	218.3	1.0309	1.52	1/248	1/7086
INDEL	Thyroid	PURA_L148Wfs*77	HLA-A33:01	LAWAPRRAR	0.9596	0.5729	0.7573	89.1	0.2462	19.61	1/248	1/7086
INDEL	Thyroid	PURA_L148Wfs*77	HLA-A33:01	STGGLAWAPR	0.9416	0.9263	0.6191	244.6	0.5475	19.61	1/248	1/7086
INDEL	Thyroid	PURA_L148Wfs*77	HLA-B35:01	WPSSSTTTEW	0.9797	0.8981	0.5245	249.3	0.5727	19.61	1/248	1/7086
INDEL	Thyroid	PURA_L148Wfs*77	HLA-A24:03	LWPSSSTTTEW	0.9936	0.6108	0.6875	124.9	0.9361	19.61	1/248	1/7086
INDEL	Thyroid	RYK_N290Qfs*66	HLA-A31:01	SYLADREER	0.9428	0.6348	1.2269	204.9	1.2275	15.59	1/248	1/7086
INDEL	Thyroid	RYK_N290Qfs*66	HLA-A31:01	KCHSFGGQR	0.8418	0.5664	1.9828	293.4	1.542	15.59	1/248	1/7086
INDEL	Thyroid	RYK_N290Qfs*66	HLA-B35:08	TPRRYFWAY	0.9488	0.7092	0.0808	241	0.1685	15.59	1/248	1/7086
INDEL	Thyroid	RYK_N290Qfs*66	HLA-A31:01	AYFPWDFNR	0.9573	0.8882	0.0096	8.4	0.0346	15.59	1/248	1/7086
INDEL	Thyroid	RYK_N290Qfs*66	HLA-A31:01	WAYFPWDFNR	0.9431	0.9398	0.5128	20	0.1428	15.59	1/248	1/7086
INDEL	Thyroid	ING5_T220Rfs*55	HLA-B44:03	KENGSVHGV	0.8005	0.904	0.7438	466.2	0.4141	14.37	1/248	1/7086
INDEL	Thyroid	XPO6_C48_L52del	HLA-C15:02	FSSTRNDYV	0.9966	0.6994	0.6891	127.8	0.1311	51.36	1/248	1/7086
INDEL	Thyroid	HECTD4_C1547Vfs*11	HLA-A02:24	TMTSVVSLV	0.988	0.5953	0.0539	38.5	0.5014	19.07	1/248	1/7086
INDEL	Thyroid	HECTD4_C1547Vfs*11	HLA-B15:01	SVVSLVCSL	0.7942	0.8364	1.8773	477	1.6455	19.07	1/248	1/7086
INDEL	Thyroid	HECTD4_C1547Vfs*11	HLA-C03:03	SVVSLVCSL	0.9962	0.9918	0.4659	143.1	0.4554	19.07	1/248	1/7086
INDEL	Thyroid	HECTD4_C1547Vfs*11	HLA-B15:01	VSLVCSLPY	0.984	0.8106	0.8444	181.4	0.8482	19.07	1/248	1/7086
INDEL	Thyroid	HECTD4_C1547Vfs*11	HLA-A02:24	SLVCSLPYRL	0.969	0.6511	1.3695	29.7	0.3979	19.07	1/248	1/7086
INDEL	Thyroid	DNMT3A_K766Efs*15	HLA-C15:02	VSDEGHLAI	0.9977	0.8978	0.0255	96	0.0867	11.15	1/248	1/7086
INDEL	Thyroid	EFCAB7_D385Vfs*37	HLA-A32:01	KIKPVTVLI	0.9956	0.8178	0.0481	24.7	0.0422	3.74	1/248	1/7086
INDEL	Thyroid	EFCAB7_D385Vfs*37	HLA-A32:01	VTVLIFSSF	0.9309	0.768	0.7081	207.7	0.3643	3.74	1/248	1/7086
INDEL	Thyroid	EFCAB7_D385Vfs*37	HLA-C14:02	YSLQRNLSL	0.9817	0.9638	0.0745	39.2	0.1379	3.74	1/248	1/7086
INDEL	Thyroid	EFCAB7_D385Vfs*37	HLA-A32:01	RNLSLLYQI	0.979	0.8488	0.9841	444.3	0.689	3.74	1/248	1/7086
INDEL	Thyroid	EFCAB7_D385Vfs*37	HLA-A32:01	KIKPVTVLIF	0.9978	0.8348	0.1072	112.7	0.1926	3.74	1/248	1/7086
INDEL	Thyroid	EFCAB7_D385Vfs*37	HLA-C14:02	FMKPNLYIEM	0.9584	0.9621	0.766	327.1	0.9301	3.74	1/248	1/7086
INDEL	Thyroid	EFCAB7_D385Vfs*37	HLA-C14:02	NYSLQRNLSL	0.9522	0.9414	1.4692	305	0.8765	3.74	1/248	1/7086
INDEL	Thyroid	USP33_K100Mfs*7	HLA-B15:16	STIHSQETM	0.9857	0.6981	1.3843	247	0.8896	20.43	1/248	1/7086
INDEL	Thyroid	USP33_K100Mfs*7	HLA-B15:16	STIHSQETMF	0.9953	0.6714	1.388	235.6	0.8506	20.43	1/248	1/7086
INDEL	Thyroid	ZNF678_F414Sfs*10	HLA-B15:16	VSATLNSAL	0.9424	0.52	1.5977	277.6	0.9941	2.9	1/248	1/7086
INDEL	Thyroid	HEATR5B_P744Efs*51	HLA-A69:01	ETLHQTVPL	0.993	0.7313	0.8833	17.2	0.0599	12.4	1/248	1/7086
INDEL	Thyroid	HEATR5B_P744Efs*51	HLA-A69:01	QTVPLEVGL	0.8653	0.5385	1.4485	136.8	0.435	12.4	1/248	1/7086
INDEL	Thyroid	HEATR5B_P744Efs*51	HLA-A32:01	GLWSMILPL	0.7337	0.9676	1.4289	92.1	0.1644	12.4	1/248	1/7086
INDEL	Thyroid	HEATR5B_P744Efs*51	HLA-B15:16	WSMILPLFI	0.9537	0.6612	1.7731	56.3	0.1748	12.4	1/248	1/7086
INDEL	Thyroid	HEATR5B_P744Efs*51	HLA-A69:01	MILPLFIYA	0.9731	0.5272	1.1617	94.4	0.3092	12.4	1/248	1/7086
INDEL	Thyroid	HEATR5B_P744Efs*51	HLA-B15:16	YAYLLEKQY	0.9605	0.6228	0.1947	406.4	1.4243	12.4	1/248	1/7086
INDEL	Thyroid	HEATR5B_P744Efs*51	HLA-A69:01	YLLEKQYLV	0.8593	0.6783	0.0495	50.9	0.1683	12.4	1/248	1/7086
INDEL	Thyroid	HEATR5B_P744Efs*51	HLA-A32:01	YLLEKQYLV	0.7	0.915	0.1498	423.7	0.6624	12.4	1/248	1/7086
INDEL	Thyroid	HEATR5B_P744Efs*51	HLA-B15:16	ESQSLMLLW	0.9556	0.7278	0.4916	306.9	1.1042	12.4	1/248	1/7086
INDEL	Thyroid	HEATR5B_P744Efs*51	HLA-A32:01	QSLMLLWPF	0.864	0.9666	1.9055	56.7	0.1041	12.4	1/248	1/7086
INDEL	Thyroid	HEATR5B_P744Efs*51	HLA-B15:16	QSLMLLWPF	0.9374	0.814	1.7785	335.1	1.2043	12.4	1/248	1/7086
INDEL	Thyroid	HEATR5B_P744Efs*51	HLA-A32:01	SLMLLWPFL	0.6692	0.9897	1.726	214.8	0.3746	12.4	1/248	1/7086
INDEL	Thyroid	HEATR5B_P744Efs*51	HLA-A32:01	LMLLWPFLV	0.5419	0.9897	1.7731	110	0.1886	12.4	1/248	1/7086
INDEL	Thyroid	HEATR5B_P744Efs*51	HLA-B15:16	QTVPLEVGLW	0.9943	0.9833	0.7267	134.4	0.487	12.4	1/248	1/7086
INDEL	Thyroid	HEATR5B_P744Efs*51	HLA-B15:16	LSESQSLMLLW	0.9932	0.8306	1.192	419.4	1.4601	12.4	1/248	1/7086
INDEL	Thyroid	ZDBF2_E1159_M1160insSKV	HLA-A32:01	KVMNLDSGF	0.9884	0.8356	0.3577	19	0.0317	4.04	1/248	1/7086
INDEL	Thyroid	ZDBF2_E1159_M1160insSKV	HLA-B15:16	KVMNLDSGF	0.9812	0.5269	1.3074	172.7	0.63	4.04	1/248	1/7086
INDEL	Thyroid	TRMT10C_E212Ffs*23	HLA-A32:01	LVFDMAYFF	0.9297	0.9619	0.6314	24.4	0.0412	18.82	1/248	1/7086
INDEL	Thyroid	TRMT10C_E212Ffs*23	HLA-B15:16	LVFDMAYFF	0.9108	0.8134	1.1027	94	0.3189	18.82	1/248	1/7086
INDEL	Thyroid	TRMT10C_E212Ffs*23	HLA-C14:02	VFDMAYFFL	0.8253	0.9496	0.6891	485	1.3199	18.82	1/248	1/7086
INDEL	Thyroid	TRMT10C_E212Ffs*23	HLA-A69:01	MAYFFLRKL	0.83	0.8323	1.7038	296.4	0.786	18.82	1/248	1/7086
INDEL	Thyroid	TRMT10C_E212Ffs*23	HLA-A32:01	MAYFFLRKL	0.7737	0.9497	0.1688	187.3	0.3324	18.82	1/248	1/7086
INDEL	Thyroid	TRMT10C_E212Ffs*23	HLA-B15:16	MAYFFLRKL	0.9113	0.8631	0.2699	102.6	0.3589	18.82	1/248	1/7086
INDEL	Thyroid	TRMT10C_E212Ffs*23	HLA-A32:01	RIAEYCFPAF	0.9968	0.9684	0.281	66	0.1211	18.82	1/248	1/7086
INDEL	Thyroid	HERC5_L425_T426insLSVCIL	HLA-A32:01	SVCILTGSF	0.7744	0.9727	1.473	466.2	0.7173	5.73	1/248	1/7086
INDEL	Thyroid	HERC5_L425_T426insLSVCIL	HLA-A69:01	FSSPACLLSV	0.9945	0.7716	1.4254	281.3	0.7598	5.73	1/248	1/7086
INDEL	Thyroid	HERC5_L425_T426insLSVCIL	HLA-B15:16	FSSPACLLSV	0.9576	0.558	1.1952	158.9	0.5807	5.73	1/248	1/7086
INDEL	Thyroid	HERC5_L425_T426insLSVCIL	HLA-B15:16	LSVCILTGSF	0.9947	0.7909	1.6471	58	0.1821	5.73	1/248	1/7086
INDEL	Thyroid	BANK1_M455Tfs*23	HLA-B15:16	EANETFMTW	0.9478	0.8778	0.0658	423.5	1.4711	5.67	1/248	1/7086
INDEL	Thyroid	BANK1_M455Tfs*23	HLA-B15:16	AEANETFMTW	0.9001	0.9225	0.3542	232.7	0.8405	5.67	1/248	1/7086
INDEL	Thyroid	ZNF354C_Q543Efs*7	HLA-A32:01	SSSLTQYEF	0.921	0.8911	1.0837	459.9	0.7091	3.21	1/248	1/7086
INDEL	Thyroid	ZNF354C_Q543Efs*7	HLA-A32:01	TQYEFSEIF	0.8915	0.8788	0.4018	254.8	0.4338	3.21	1/248	1/7086
INDEL	Thyroid	ZNF354C_Q543Efs*7	HLA-C14:02	TQYEFSEIF	0.6216	0.938	0.5671	388.2	1.0828	3.21	1/248	1/7086
INDEL	Thyroid	ZKSCAN3_L121Sfs*35	HLA-A69:01	VVLSLNWSI	0.7633	0.8044	1.749	107.7	0.3527	1.65	1/248	1/7086
INDEL	Thyroid	ZKSCAN3_L121Sfs*35	HLA-A32:01	VVLSLNWSI	0.9254	0.9438	1.0678	18.2	0.0303	1.65	1/248	1/7086
INDEL	Thyroid	ZKSCAN3_L121Sfs*35	HLA-A32:01	VLSLNWSIW	0.954	0.9332	1.4289	451.4	0.698	1.65	1/248	1/7086
INDEL	Thyroid	XPO5_L872Ifs*16	HLA-B15:16	LATQIHNLI	0.9679	0.64	0.8677	119	0.428	15.01	1/248	1/7086
INDEL	Thyroid	XPO5_L872Ifs*16	HLA-A32:01	QIHNLISSF	0.9531	0.7715	0.3495	159.3	0.2845	15.01	1/248	1/7086
INDEL	Thyroid	XPO5_L872Ifs*16	HLA-B15:16	YTVEDLATQI	0.9611	0.896	1.6875	361	1.2802	15.01	1/248	1/7086
INDEL	Thyroid	RUNX2_R181Ifs*39	HLA-A32:01	AVMKNQVAI	0.9677	0.9783	0.6837	113.6	0.1939	6.34	1/248	1/7086
INDEL	Thyroid	RUNX2_R181Ifs*39	HLA-B15:16	RSEICGPEW	0.7946	0.9155	0.2573	283.2	1.015	6.34	1/248	1/7086
INDEL	Thyroid	AKAP9_R548Sfs*9	HLA-A32:01	IQRASILQF	0.9513	0.896	0.2197	420.4	0.658	11.93	1/248	1/7086
INDEL	Thyroid	AKAP9_K3428delinsIFQ	HLA-A32:01	RQQVYIFQL	0.98	0.8759	0.2543	64.5	0.1186	11.93	1/248	1/7086
INDEL	Thyroid	CASD1_S243delinsIDG	HLA-B15:16	AAVSILNSI	0.9953	0.7218	0.9595	261.8	0.9413	20.5	1/248	1/7086
INDEL	Thyroid	ACADSB_R405_D406insVTFS	HLA-A69:01	YPVEKYFRV	0.7536	0.8894	0.3851	120.3	0.3891	10.96	1/248	1/7086
INDEL	Thyroid	ACADSB_R405_D406insVTFS	HLA-C14:02	FSDAKIGTI	0.9915	0.7902	0.9814	448.3	1.2329	10.96	1/248	1/7086
INDEL	Thyroid	ACADSB_R405_D406insVTFS	HLA-B15:16	VTFSDAKIGTI	0.9984	0.5635	0.9173	380.7	1.3434	10.96	1/248	1/7086
INDEL	Thyroid	KMT2A_T1878Ifs*32	HLA-A69:01	MVMTVLMML	0.945	0.5114	1.7612	14.1	0.047	10.35	1/248	1/7086
INDEL	Thyroid	KMT2A_T1878Ifs*32	HLA-A32:01	MVMTVLMML	0.8022	0.9637	0.6854	116.2	0.1977	10.35	1/248	1/7086
INDEL	Thyroid	KMT2A_T1878Ifs*32	HLA-A32:01	LMMLVVYYI	0.7801	0.8638	1.3381	77.3	0.1431	10.35	1/248	1/7086
INDEL	Thyroid	KMT2A_T1878Ifs*32	HLA-A32:01	MMLVVYYIL	0.6919	0.8679	1.5935	75.5	0.1398	10.35	1/248	1/7086
INDEL	Thyroid	KMT2A_T1878Ifs*32	HLA-C14:02	YYILAKMSGHM	0.8362	0.9802	1.9543	241.9	0.7096	10.35	1/248	1/7086
INDEL	Thyroid	NBEA_G934Efs*22	HLA-C14:02	KYEWGEKNL	0.6407	0.9764	0.891	448.9	1.2344	4.59	1/248	1/7086
INDEL	Thyroid	ATG2B_S495Lfs*9	HLA-B15:16	TSLPSRLKI	0.99	0.5617	0.4646	145.9	0.5313	5.93	1/248	1/7086
INDEL	Thyroid	ATG2B_S495Lfs*9	HLA-B15:16	TSLPSRLKIF	0.9925	0.5714	1.4821	133.2	0.4826	5.93	1/248	1/7086
INDEL	Thyroid	UBR1_N1111Ifs*22	HLA-A32:01	ITFLNMIMPW	0.9707	0.9357	1.6818	51.2	0.0901	9.53	1/248	1/7086
INDEL	Thyroid	UBR1_N1111Ifs*22	HLA-B15:16	ITFLNMIMPW	0.9716	0.5734	1.4904	19.6	0.0243	9.53	1/248	1/7086
INDEL	Thyroid	UBR1_N1111Ifs*22	HLA-C14:02	WYYRPVSRNL	0.8057	0.9835	1.3176	59.1	0.1964	9.53	1/248	1/7086
INDEL	Thyroid	UBR1_N1111Ifs*22	HLA-C06:02	YYRPVSRNLL	0.927	0.9951	0.6674	386.3	0.1293	9.53	1/248	1/7086
INDEL	Thyroid	UBR1_N1111Ifs*22	HLA-C14:02	YYRPVSRNLL	0.8623	0.9777	0.1302	29.2	0.1034	9.53	1/248	1/7086
INDEL	Thyroid	TRPM7_S1351Cfs*32	HLA-B15:16	RTATETTW	0.9968	0.9805	0.4865	276.9	0.9919	8.69	1/248	1/7086
INDEL	Thyroid	MAPK6_G687Sfs*15	HLA-C14:02	FHSPVSSF	0.9661	0.9507	1.0266	253.8	0.744	16.99	1/248	1/7086
INDEL	Thyroid	MAPK6_G687Sfs*15	HLA-B15:16	VSSFLGHHL	0.9827	0.5669	0.7881	151.8	0.5542	16.99	1/248	1/7086
INDEL	Thyroid	MAPK6_G687Sfs*15	HLA-C14:02	FLGHHLSQY	0.5117	0.9697	0.6117	491.7	1.3364	16.99	1/248	1/7086
INDEL	Thyroid	MAPK6_G687Sfs*15	HLA-C14:02	QFHSPVSSFL	0.835	0.9839	0.5779	332.6	0.9436	16.99	1/248	1/7086
INDEL	Thyroid	MAPK6_G687Sfs*15	HLA-C14:02	SFLGHHLSQY	0.6087	0.9685	0.2253	391.7	1.0916	16.99	1/248	1/7086
INDEL	Thyroid	MAPK6_G687Sfs*15	HLA-B15:16	SSFLGHHLSQY	0.992	0.7776	1.6564	320.8	1.1549	16.99	1/248	1/7086
INDEL	Thyroid	ZC3H7A_S397Lfs*36	HLA-A32:01	LLQRISWEF	0.9706	0.9547	0.637	43.5	0.0784	21.46	1/248	1/7086
INDEL	Thyroid	ZC3H7A_S397Lfs*36	HLA-A32:01	ISWEFQVSL	0.8861	0.9419	0.8108	66.2	0.1215	21.46	1/248	1/7086
INDEL	Thyroid	ZC3H7A_S397Lfs*36	HLA-B15:16	ISWEFQVSL	0.9933	0.6949	0.766	74.3	0.2431	21.46	1/248	1/7086
INDEL	Thyroid	ZC3H7A_S397Lfs*36	HLA-A69:01	MTLETFLEV	0.998	0.7307	0.1625	4.4	0.0083	21.46	1/248	1/7086
INDEL	Thyroid	ZC3H7A_S397Lfs*36	HLA-A32:01	MTLETFLEV	0.8394	0.9841	0.3987	185.7	0.3298	21.46	1/248	1/7086
INDEL	Thyroid	ZC3H7A_S397Lfs*36	HLA-B15:16	MTLETFLEV	0.9149	0.9167	0.433	63.2	0.2028	21.46	1/248	1/7086
INDEL	Thyroid	ZC3H7A_S397Lfs*36	HLA-B15:16	VSLEMTLETF	0.9983	0.8914	1.0341	31.3	0.066	21.46	1/248	1/7086
INDEL	Thyroid	CIRH1A_L117Tfs*12	HLA-B13:02	SQLTTNWLV	0.8106	0.8491	0.276	108.3	0.0087	20.8	1/248	1/7086
INDEL	Thyroid	CIRH1A_L117Tfs*12	HLA-A69:01	TTNWLVVKM	0.8742	0.7294	1.4821	394.4	0.9658	20.8	1/248	1/7086
INDEL	Thyroid	CIRH1A_L117Tfs*12	HLA-B13:02	SQLTTNWLVV	0.7048	0.8867	0.8991	259.3	0.0206	20.8	1/248	1/7086
INDEL	Thyroid	ZNF85_F575Lfs*11	HLA-B15:16	KALPHSSHL	0.9973	0.933	0.4789	195.4	0.7057	3.04	1/248	1/7086
INDEL	Thyroid	ZNF85_F575Lfs*11	HLA-C14:02	KALPHSSHL	0.5741	0.9861	0.5706	262.8	0.7687	3.04	1/248	1/7086
INDEL	Thyroid	ZNF85_F575Lfs*11	HLA-B15:16	KALPHSSHLY	0.9915	0.8793	0.1317	100.6	0.3498	3.04	1/248	1/7086
INDEL	Thyroid	EIF4ENIF1_S540_S541insNKYI	HLA-A69:01	YISNLLSGL	0.8006	0.6911	1.9055	389.8	0.9587	16.48	1/248	1/7086
INDEL	Thyroid	EIF4ENIF1_S540_S541insNKYI	HLA-C14:02	KYISNLLSGL	0.8785	0.9517	0.5757	164.7	0.5129	16.48	1/248	1/7086
INDEL	Thyroid	USP9X_E767_L768insYQ	HLA-A69:01	MMDDLEYQL	0.679	0.8663	0.6837	436.9	1.0338	25.6	1/248	1/7086
INDEL	Thyroid	USP9X_E767_L768insYQ	HLA-A32:01	QLIGLDYLW	0.9768	0.9429	0.4078	42.7	0.0771	25.6	1/248	1/7086
INDEL	Thyroid	USP9X_E767_L768insYQ	HLA-B15:16	RAYMMDDLEY	0.9633	0.8632	1.8202	51.2	0.1479	25.6	1/248	1/7086
INDEL	Thyroid	TENM4_D1012Efs*128	HLA-B18:01	NEIPSCEQF	0.9946	0.7023	0.0618	104.6	0.0731	7.49	1/248	1/7086
INDEL	Thyroid	TENM4_D1012Efs*128	HLA-B07:02	QPHPPDHPL	0.9993	0.5925	0.0452	49.5	0.1723	7.49	1/248	1/7086
INDEL	Thyroid	TENM4_D1012Efs*128	HLA-C07:02	FRSLCFRGL	0.7942	0.9511	0.713	92.2	0.0504	7.49	1/248	1/7086
INDEL	Thyroid	TENM4_D1012Efs*128	HLA-A11:01	RLSIPTDVLR	0.8503	0.5692	0.7014	330.6	1.3869	7.49	1/248	1/7086
INDEL	Thyroid	TENM4_D1012Efs*128	HLA-B07:02	VVRCSPRPVL	0.9712	0.6241	1.3381	261.1	0.5649	7.49	1/248	1/7086
INDEL	Thyroid	TENM4_D1012Efs*128	HLA-B07:02	SPRPVLLFHL	0.9978	0.5201	0.2499	22.8	0.081	7.49	1/248	1/7086
INDEL	Thyroid	TENM4_D1012Efs*128	HLA-B07:02	APHGSGGGPPL	0.9999	0.6875	0.1915	23.2	0.0829	7.49	1/248	1/7086
INDEL	Thyroid	TENM4_D1012Efs*128	HLA-B07:02	QPEGVWAFRSL	0.994	0.5672	1.5116	377.1	0.7084	7.49	1/248	1/7086
INDEL	Thyroid	ALDH3A2_E207Nfs*23	HLA-B18:01	WEGKVHVIL	0.8801	0.8557	0.9711	172.1	0.1075	123.93	1/248	1/7086
INDEL	Thyroid	SENP2_Q183_A184insKKKEKKYHQ	HLA-C16:01	KYHQAVTEM	0.9589	0.965	0.4061	173.4	0.5829	23.63	1/248	1/7086
INDEL	Thyroid	PHACTR2_E83Ifs*12	HLA-C16:01	IIMNCLIKM	0.9068	0.9723	1.0394	263	0.8455	16.57	1/248	1/7086
INDEL	Thyroid	SLC24A1_A53delinsVIS	HLA-C16:01	SSLWAVISV	0.7883	0.9832	0.3685	73.1	0.2546	8.79	1/248	1/7086
INDEL	Thyroid	SLC24A1_A53delinsVIS	HLA-C16:01	ISVSSHQPI	0.6796	0.9428	1.0394	101.6	0.353	8.79	1/248	1/7086
INDEL	Thyroid	FMO2_I104delinsSDNYAFKNF	HLA-C16:01	YAFKNFQF	0.9991	0.9803	0.1112	176.4	0.5915	1.96	1/248	1/7086
INDEL	Thyroid	ANKRD12_L711Mfs*7	HLA-B44:03	TEDLFMLKY	0.9991	0.9419	0.0618	180.3	0.1969	8.43	1/248	1/7086
INDEL	Thyroid	CEP68_D649Tfs*26	HLA-A02:01	GLQPGPILQV	0.9956	0.7317	0.0734	107.5	1.1059	6.63	1/248	1/7086
INDEL	Thyroid	CEP68_D649Tfs*26	HLA-A02:01	SLLCSFTGNL	0.9569	0.714	1.2828	85.5	0.9535	6.63	1/248	1/7086
INDEL	Thyroid	ARAP3_A1004Vfs*16	HLA-A02:01	RLLPRWREAV	0.9585	0.7309	1.7317	181.7	1.5501	4.52	1/248	1/7086
INDEL	Thyroid	ARAP3_A1004Vfs*16	HLA-A31:01	RWREAVSCPR	0.9788	0.656	0.5399	15.5	0.0999	4.52	1/248	1/7086
INDEL	Thyroid	ARAP3_A1004Vfs*16	HLA-A31:01	RWREAVSCPRR	0.9936	0.6824	0.8361	135.3	0.9356	4.52	1/248	1/7086
INDEL	Thyroid	PLA2G2D_K27Efs*43	HLA-B08:01	LLALRLSL	0.9998	0.9069	0.3987	16.7	0.0209	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_K27Efs*43	HLA-B35:03	HPLLLALRL	0.9806	0.8936	0.2138	462.8	0.0789	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_K27Efs*43	HLA-B08:01	LLLALRLSL	0.9876	0.9327	0.8399	84.5	0.1497	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_K27Efs*43	HLA-A31:01	LLALRLSLR	0.9652	0.7035	0.5245	66.2	0.5482	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_K27Efs*43	HLA-A31:01	ALRLSLRTR	0.9453	0.5625	0.296	39.2	0.3212	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_K27Efs*43	HLA-A31:01	LSLRTRWQR	0.9774	0.5334	0.3009	6.5	0.0209	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_K27Efs*43	HLA-B08:01	RPTQRCHGL	0.9483	0.7682	0.4698	254.1	0.4391	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_K27Efs*43	HLA-B08:01	TQRCHGLVL	0.9376	0.8658	0.8468	159.9	0.2839	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_K27Efs*43	HLA-A31:01	NAHPLLLALR	0.9444	0.5588	0.9841	351.8	1.7092	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_K27Efs*43	HLA-A31:01	LLLALRLSLR	0.9744	0.7142	1.3729	42.3	0.3494	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_K27Efs*43	HLA-A31:01	RLSLRTRWQR	0.9873	0.5659	0.4986	5.9	0.0153	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_K27Efs*43	HLA-B08:01	RPTQRCHGLVL	0.978	0.7243	1.4692	342.4	0.5577	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_L25Sfs*45	HLA-B08:01	LLALRLSL	0.9998	0.9069	0.3987	16.7	0.0209	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_L25Sfs*45	HLA-B35:03	HPLLLALRL	0.9806	0.8936	0.2138	462.8	0.0789	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_L25Sfs*45	HLA-B08:01	LLLALRLSL	0.9876	0.9327	0.8399	84.5	0.1497	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_L25Sfs*45	HLA-A31:01	LLALRLSLR	0.9652	0.7035	0.5245	66.2	0.5482	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_L25Sfs*45	HLA-A31:01	ALRLSLRTR	0.9453	0.5625	0.296	39.2	0.3212	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_L25Sfs*45	HLA-A31:01	LSLRTRWQR	0.9774	0.5334	0.3009	6.5	0.0209	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_L25Sfs*45	HLA-B08:01	RPTQRCHGL	0.9483	0.7682	0.4698	254.1	0.4391	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_L25Sfs*45	HLA-B08:01	TQRCHGLVL	0.9376	0.8658	0.8468	159.9	0.2839	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_L25Sfs*45	HLA-A31:01	NAHPLLLALR	0.9444	0.5588	0.9841	351.8	1.7092	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_L25Sfs*45	HLA-A31:01	LLLALRLSLR	0.9744	0.7142	1.3729	42.3	0.3494	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_L25Sfs*45	HLA-A31:01	RLSLRTRWQR	0.9873	0.5659	0.4986	5.9	0.0153	1.12	1/248	1/7086
INDEL	Thyroid	PLA2G2D_L25Sfs*45	HLA-B08:01	RPTQRCHGLVL	0.978	0.7243	1.4692	342.4	0.5577	1.12	1/248	1/7086
INDEL	Thyroid	FAM35A_T297Kfs*6	HLA-A31:01	IQLDGFKVR	0.9005	0.6	0.8677	422.5	1.8989	16.82	1/248	1/7086
INDEL	Thyroid	SLC5A8_G457Efs*33	HLA-B35:03	FAISLWVEL	0.9925	0.9136	0.4295	235.9	0.044	3.89	1/248	1/7086
INDEL	Thyroid	SLC5A8_G457Efs*33	HLA-B08:01	ELKYILHFL	0.9156	0.5291	1.4821	350.4	0.568	3.89	1/248	1/7086
INDEL	Thyroid	SLC5A8_G457Efs*33	HLA-A31:01	KAVTAPTMR	0.9805	0.6646	0.2925	84.9	0.6664	3.89	1/248	1/7086
INDEL	Thyroid	SLC5A8_G457Efs*33	HLA-B08:01	FLREHCHCTL	0.9867	0.9151	0.7594	11.9	0.0105	3.89	1/248	1/7086
INDEL	Thyroid	SLC5A8_G457Efs*33	HLA-A31:01	ISKAVTAPTMR	0.991	0.7095	0.6392	63.3	0.5283	3.89	1/248	1/7086
INDEL	Thyroid	ZNF592_Q849Sfs*15	HLA-B35:02	HPAPQTLPA	0.9453	0.7666	0.5128	244.6	0.0707	17.56	1/248	1/7086
INDEL	Thyroid	ARRDC3_L123Hfs*38	HLA-B44:03	GESRIAQAL	0.9914	0.9617	0.0267	227.3	0.2384	122.3	1/248	1/7086
INDEL	Thyroid	ARRDC3_L123Hfs*38	HLA-A02:01	KIKEGIYSL	0.9361	0.6415	0.0267	110.9	1.1294	122.3	2/248	2/7086
INDEL	Thyroid	ARRDC3_L123Hfs*38	HLA-A02:01	KIKEGIYSL	0.9361	0.6415	0.0267	110.9	1.1294	122.3	2/248	2/7086
INDEL	Thyroid	ARRDC3_L123Hfs*38	HLA-C16:01	KIKEGIYSL	0.9784	0.9566	0.0412	80.7	0.2824	122.3	1/248	1/7086
INDEL	Thyroid	ARRDC3_L123Hfs*38	HLA-B44:03	FELPQTPHRY	0.9978	0.9498	0.1025	238.2	0.2471	122.3	1/248	1/7086
INDEL	Thyroid	RFX3_S339Ffs*31	HLA-B08:01	TVRQYWTL	0.9756	0.7528	1.9828	173.5	0.3061	7.49	1/248	1/7086
INDEL	Thyroid	RFX3_S339Ffs*31	HLA-B35:01	FIESTVRQY	0.9609	0.8194	0.1886	304.5	0.6475	7.49	1/248	1/7086
INDEL	Thyroid	RFX3_S339Ffs*31	HLA-B08:01	TVRQYWTLL	0.7493	0.7515	1.1249	381.6	0.6076	7.49	1/248	1/7086
INDEL	Thyroid	RFX3_S339Ffs*31	HLA-B35:01	LPEFGEVEIF	0.9947	0.974	0.555	71	0.2484	7.49	1/248	1/7086
INDEL	Thyroid	PARP4_I48Lfs*4	HLA-B15:17	FSLNPQCTHL	0.9909	0.8766	0.9549	121.9	1.4114	64.81	1/248	1/7086
INDEL	Thyroid	PARP4_I48Lfs*4	HLA-C12:03	FSLNPQCTHL	0.9978	0.9683	0.6018	438.2	1.4201	64.81	1/248	1/7086
INDEL	Thyroid	MROH6_D545Gfs*38	HLA-A30:01	RSWSPWPTM	0.7704	0.9552	0.7616	66.1	0.3389	4.92	1/248	1/7086
INDEL	Thyroid	MROH6_D545Gfs*38	HLA-A66:01	TTPFAGACWR	0.9764	0.7132	0.7172	337.3	0.132	4.92	1/248	1/7086
INDEL	Thyroid	MROH6_D545Gfs*38	HLA-C07:01	WRSWSPWPTM	0.9974	0.8304	1.4692	287.4	0.1042	4.92	1/248	1/7086
INDEL	Thyroid	FARP1_K239Rfs*12	HLA-B07:02	WPLPTREF	0.9933	0.5645	1.3843	474.6	0.8049	3.32	1/248	1/7086
INDEL	Thyroid	FARP1_K239Rfs*12	HLA-A24:02	IWPLPTREF	0.9968	0.6377	0.0427	135.3	0.2663	3.32	1/248	1/7086
INDEL	Thyroid	CEP63_M642_N643insC	HLA-B15:01	SMCNDQEEF	0.9777	0.8831	0.7226	406.2	1.5015	1.59	1/248	1/7086
INDEL	Thyroid	MAST4_G1366Qfs*85	HLA-B35:01	NPATHLPAA	0.847	0.7147	0.348	379.8	0.739	1.97	1/248	1/7086
INDEL	Thyroid	MAST4_G1366Qfs*85	HLA-B35:01	LPAAVTIPS	0.9569	0.8487	1.073	39.8	0.1541	1.97	1/248	1/7086
INDEL	Thyroid	MAST4_G1366Qfs*85	HLA-C03:04	VTIPSSGTL	0.9975	0.9823	0.1132	15.7	0.0643	1.97	1/248	1/7086
INDEL	Thyroid	MAST4_G1366Qfs*85	HLA-B15:01	GQFQDRASL	0.9987	0.9281	0.0452	239.1	1.0446	1.97	1/248	1/7086
INDEL	Thyroid	MAST4_G1366Qfs*85	HLA-C03:04	AVRGEAVAL	0.9873	0.9948	0.2573	421.3	0.8881	1.97	1/248	1/7086
INDEL	Thyroid	MAST4_G1366Qfs*85	HLA-C03:04	RAVRGEAVAL	0.9975	0.9937	0.6252	473.5	0.9728	1.97	1/248	1/7086
INDEL	Thyroid	LRRC46_I22_T23del	HLA-B08:01	EALKRNLTF	0.9887	0.7239	0.2122	400.6	0.6356	2.3	1/248	1/7086
INDEL	Thyroid	NIPA2_M327dup	HLA-A69:01	NLSNMMYEV	0.9444	0.6921	1.3951	83.3	0.2759	19.21	1/248	1/7086
INDEL	Thyroid	NIPA2_M327dup	HLA-B15:17	LSNMMYEVL	0.9615	0.9197	1.0524	35.6	0.5763	19.21	1/248	1/7086
INDEL	Thyroid	NIPA2_M327dup	HLA-B15:17	KAMNGNLSNMM	0.9991	0.8743	0.7986	155.3	1.6232	19.21	1/248	1/7086
INDEL	Thyroid	NBR1_H83Qfs*15	HLA-C12:03	QVQKGTMSL	0.9929	0.9515	0.6154	338.6	1.1861	85.27	1/248	1/7086
INDEL	Thyroid	BACH1_S658Vfs*71	HLA-A02:01	GLQQCCLPV	0.9584	0.6512	0.4737	37.8	0.4943	30.24	2/248	2/7086
INDEL	Thyroid	BACH1_S658Vfs*71	HLA-A02:01	GLQQCCLPV	0.9584	0.6512	0.4737	37.8	0.4943	30.24	2/248	2/7086
INDEL	Thyroid	BACH1_S658Vfs*71	HLA-C03:04	RVVGSQISV	0.8587	0.9797	0.7494	457	0.9456	30.24	1/248	1/7086
INDEL	Thyroid	BACH1_S658Vfs*71	HLA-A02:01	FLISEKDKVLL	0.997	0.5526	0.0643	137.5	1.2983	30.24	2/248	2/7086
INDEL	Thyroid	BACH1_S658Vfs*71	HLA-A02:01	FLISEKDKVLL	0.997	0.5526	0.0643	137.5	1.2983	30.24	2/248	2/7086
INDEL	Thyroid	TEAD1_P267Lfs*7	HLA-A74:01	QIYDKFLKR	0.9939	0.6336	0.0031	309.5	0.1431	18.59	1/248	1/7086
INDEL	Thyroid	TEAD1_P267Lfs*7	HLA-A74:01	RQIYDKFLKR	0.9894	0.5825	0.024	204.4	0.0857	18.59	1/248	1/7086
INDEL	Thyroid	RPS6KA4_Y359Tfs*16	HLA-B58:01	RIFQGTPLW	0.9982	0.9937	0.0025	6.2	0.0229	18.08	1/248	1/7086
