Type	Tissue	Mutation	HLA	Peptide	Deep_bind	Deep_imm	MHCf_rank (%)	Net4_aff (nM)	Net4_rank (%)	TPM	Frequency in the tissue	Frequency in all samples
INDEL	Breast	TUFT1_H57_S58delinsQ	HLA-C16:01	VSSQAGHSL	0.7702	0.9831	0.2996	48.2	0.1495	47.95	1/888	1/7086
INDEL	Breast	GATA3_H423Afs*84	HLA-C16:01	MAPAIQPVL	0.9951	0.9863	0.051	46.4	0.1435	509.45	1/888	1/7086
INDEL	Breast	GATA3_H423Afs*84	HLA-B58:01	MAPAIQPVLW	0.9994	0.9925	0.1227	5.1	0.0166	509.45	2/888	2/7086
INDEL	Breast	GATA3_H423Afs*84	HLA-B58:01	PMAPAIQPVLW	0.9954	0.9808	1.2899	80.9	0.4102	509.45	2/888	2/7086
INDEL	Breast	TBX3_Y265Lfs*17	HLA-C16:01	RANDILKLPL	0.9938	0.9894	0.7808	158	0.5372	84.98	1/888	1/7086
INDEL	Breast	TBX3_D160Gfs*5	HLA-C03:04	IAADGLSL	1	0.9857	0.2925	210.6	0.5822	122.75	1/888	1/7086
INDEL	Breast	TBX3_D160Gfs*5	HLA-C03:04	IIAADGLSL	0.9989	0.989	0.4347	41.1	0.1824	122.75	1/888	1/7086
INDEL	Breast	TBX3_D160Gfs*5	HLA-A02:01	LLMDIIAADGL	0.997	0.6487	0.5757	14.2	0.1744	122.75	1/888	1/7086
INDEL	Breast	NARS2_H179Ffs*5	HLA-B15:03	FKDSGFVHIF	0.9955	0.8012	1.1706	34.6	0.6346	67.03	1/888	1/7086
INDEL	Breast	NARS2_V176Gfs*19	HLA-B15:03	GSWLQGVHF	0.9256	0.9224	0.6758	89	1.3228	67.03	1/888	1/7086
INDEL	Breast	NARS2_V176Gfs*19	HLA-B15:03	LQGVHFSLCY	0.7032	0.6347	1.0891	18.3	0.3296	67.03	1/888	1/7086
INDEL	Breast	INPP5F_F398Sfs*20	HLA-A02:05	LLSTTHTSL	0.9686	0.6037	0.0995	182.7	1.1213	10	1/888	1/7086
INDEL	Breast	INPP5F_F398Sfs*20	HLA-B58:01	STTHTSLTF	0.9892	0.8469	0.1625	94.3	0.458	10	1/888	1/7086
INDEL	Breast	INPP5F_F398Sfs*20	HLA-B58:01	LSTTHTSLTF	0.998	0.8367	0.4951	34.8	0.22	10	1/888	1/7086
INDEL	Breast	ATPIF1_N32Mfs*27	HLA-B27:05	KRNDISEHR	0.9987	0.7559	0.7058	488.8	1.2251	34.07	1/888	1/7086
INDEL	Breast	ATPIF1_N32Mfs*27	HLA-B27:05	HRVENNWQL	0.9997	0.8972	0.0618	47.2	0.1401	34.07	1/888	1/7086
INDEL	Breast	ATPIF1_N32Mfs*27	HLA-C07:01	HRVENNWQL	0.9984	0.7507	0.024	118.2	0.0464	34.07	1/888	1/7086
INDEL	Breast	PLCE1_I1285Sfs*13	HLA-B27:05	SRYLMPLL	1	0.8344	0.2287	173.7	0.5532	2.69	1/888	1/7086
INDEL	Breast	PLCE1_I1285Sfs*13	HLA-B08:01	MPLLLQAL	0.9919	0.93	0.2925	109.4	0.194	2.69	1/888	1/7086
INDEL	Breast	PLCE1_I1285Sfs*13	HLA-C02:02	FSRYLMPLL	0.7865	0.9253	0.8294	295.2	0.1716	2.69	1/888	1/7086
INDEL	Breast	PLCE1_I1285Sfs*13	HLA-B27:05	SRYLMPLLL	0.9999	0.8423	0.0109	15.8	0.0183	2.69	1/888	1/7086
INDEL	Breast	PLCE1_I1285Sfs*13	HLA-C07:01	SRYLMPLLL	0.9994	0.686	0.0025	18.3	0.0081	2.69	1/888	1/7086
INDEL	Breast	PLCE1_I1285Sfs*13	HLA-A02:01	YLMPLLLQA	0.9957	0.5237	0.0096	3.5	0.013	2.69	1/888	1/7086
INDEL	Breast	PLCE1_I1285Sfs*13	HLA-B27:05	SRYLMPLLLQ	0.9998	0.7759	0.5128	93.6	0.3106	2.69	1/888	1/7086
INDEL	Breast	PLCE1_I1285Sfs*13	HLA-A02:01	YLMPLLLQAL	0.9957	0.5722	0.1285	5.7	0.0455	2.69	1/888	1/7086
INDEL	Breast	PLCE1_I1285Sfs*13	HLA-B08:01	YLMPLLLQAL	0.8843	0.9634	1.8016	221	0.389	2.69	1/888	1/7086
INDEL	Breast	PLCE1_I1285Sfs*13	HLA-B27:05	SRYLMPLLLQA	0.9999	0.7175	0.4529	156.6	0.5084	2.69	1/888	1/7086
INDEL	Breast	CHML_H81Mfs*87	HLA-A02:01	SLFARRMKL	0.8955	0.6656	0.5491	148.6	1.3721	26.01	1/888	1/7086
INDEL	Breast	CHML_H81Mfs*87	HLA-A02:01	KLFATPVRI	0.9937	0.5078	0.0011	40.2	0.5218	26.01	1/888	1/7086
INDEL	Breast	CHML_H81Mfs*87	HLA-A02:01	LLWGCLIPS	0.9832	0.6572	0.8087	52.7	0.6575	26.01	1/888	1/7086
INDEL	Breast	CHML_H81Mfs*87	HLA-B07:02	TPVRIWRTTL	0.9963	0.6277	0.1255	8.7	0.0178	26.01	1/888	1/7086
INDEL	Breast	CHML_H81Mfs*87	HLA-A02:01	CLIPSLKFWI	0.9261	0.5077	1.7731	185.2	1.5686	26.01	1/888	1/7086
INDEL	Breast	ST6GALNAC3_R208Tfs*37	HLA-C07:02	TRIMSPVWL	0.7974	0.9832	0.348	225.1	0.1477	1.05	1/888	1/7086
INDEL	Breast	ST6GALNAC3_R208Tfs*37	HLA-A02:01	RIMSPVWLI	0.9776	0.6681	0.1255	11	0.1307	1.05	1/888	1/7086
INDEL	Breast	ALCAM_I434Lfs*32	HLA-C07:02	RFSKASHSM	0.7084	0.8823	0.8655	410.4	0.2702	109.15	1/888	1/7086
INDEL	Breast	ZNF300_E410Dfs*13	HLA-C07:02	YRMWESLL	0.9985	0.9752	1.5432	270.4	0.1772	1.67	1/888	1/7086
INDEL	Breast	LPAR4_Y98Sfs*72	HLA-B07:02	TPSARSLEL	0.9998	0.6365	0.0096	13.5	0.0399	1.38	1/888	1/7086
INDEL	Breast	LPAR4_Y98Sfs*72	HLA-A02:01	SILFDLVLL	0.9477	0.7316	0.8723	124.8	1.2205	1.38	1/888	1/7086
INDEL	Breast	LPAR4_Y98Sfs*72	HLA-A02:01	ILFDLVLLG	0.9736	0.743	1.3596	175.2	1.5159	1.38	1/888	1/7086
INDEL	Breast	LPAR4_Y98Sfs*72	HLA-A02:01	GILPLCVLV	0.9835	0.7342	0.3514	38.8	0.5049	1.38	1/888	1/7086
INDEL	Breast	LPAR4_Y98Sfs*72	HLA-A02:01	SMGACSFSPV	0.9654	0.5273	0.6758	25.1	0.3435	1.38	1/888	1/7086
INDEL	Breast	LPAR4_Y98Sfs*72	HLA-A02:01	ILFDLVLLGL	0.9928	0.6008	0.2745	9.4	0.1093	1.38	1/888	1/7086
INDEL	Breast	LPAR4_Y98Sfs*72	HLA-A02:01	LLGLGGILPL	0.9798	0.6488	0.9152	16.6	0.2107	1.38	1/888	1/7086
INDEL	Breast	LPAR4_Y98Sfs*72	HLA-A02:01	GLGGILPLCV	0.9731	0.7864	0.6314	57.3	0.7039	1.38	1/888	1/7086
INDEL	Breast	LPAR4_Y98Sfs*72	HLA-A02:01	VLLGLGGILPL	0.9946	0.5591	0.9455	51.3	0.6439	1.38	1/888	1/7086
INDEL	Breast	SMARCA1_Q787Rfs*25	HLA-C07:02	FNFSHHAYL	0.8556	0.7401	0.5601	86.3	0.0461	37.05	1/888	1/7086
INDEL	Breast	SMARCA1_Q787Rfs*25	HLA-B07:02	RPPKQPNVRI	0.9326	0.5983	0.4456	193.4	0.4619	37.05	1/888	1/7086
INDEL	Breast	IPP_R453Vfs*51	HLA-C03:03	KSMIHFLSV	0.8915	0.9866	0.1072	128.5	0.4253	13.95	1/888	1/7086
INDEL	Breast	IPP_R453Vfs*51	HLA-C03:03	MIHFLSVGL	0.9769	0.9786	1.2367	269.7	0.6787	13.95	1/888	1/7086
INDEL	Breast	IPP_R453Vfs*51	HLA-C03:03	FLSVGLHFL	0.7793	0.9898	0.3624	387.3	0.8423	13.95	1/888	1/7086
INDEL	Breast	IPP_R453Vfs*51	HLA-C03:03	HSMTASILL	0.9991	0.9821	0.5637	15.9	0.0653	13.95	1/888	1/7086
INDEL	Breast	IPP_R453Vfs*51	HLA-C07:01	MRPKMLFIL	0.9944	0.6845	0.1821	213.7	0.0806	13.95	1/888	1/7086
INDEL	Breast	NBEAL2_L1277Gfs*45	HLA-A02:01	SVFPRVTYL	0.9507	0.6647	0.0121	68.6	0.8157	35.25	1/888	1/7086
INDEL	Breast	NBEAL2_L1277Gfs*45	HLA-C07:02	SVFPRVTYL	0.9841	0.8711	0.0808	38.6	0.0151	35.25	1/888	1/7086
INDEL	Breast	UQCRC1_G252_A258del	HLA-A02:01	HLGEDAVPTL	0.9663	0.7789	0.7267	235.6	1.8244	273.59	1/888	1/7086
INDEL	Breast	GALNT7_P453Ffs*12	HLA-C07:02	FRPFMLGLL	0.8739	0.9606	0.637	77.3	0.0392	82.06	1/888	1/7086
INDEL	Breast	LMTK2_D523Gfs*24	HLA-A02:01	FLMPTTFL	0.997	0.6623	1.2592	8.9	0.1007	16.33	1/888	1/7086
INDEL	Breast	LMTK2_D523Gfs*24	HLA-A02:01	KQGSLEWFL	0.8419	0.5645	0.7905	203.3	1.6638	16.33	1/888	1/7086
INDEL	Breast	LMTK2_D523Gfs*24	HLA-A02:01	GSLEWFLFL	0.9604	0.642	0.3461	125.8	1.2272	16.33	1/888	1/7086
INDEL	Breast	LMTK2_D523Gfs*24	HLA-A02:01	SLEWFLFLM	0.9228	0.7166	0.7986	205.8	1.6765	16.33	1/888	1/7086
INDEL	Breast	LMTK2_D523Gfs*24	HLA-A02:01	FLFLMPTTF	0.829	0.6546	0.6038	217.1	1.7336	16.33	1/888	1/7086
INDEL	Breast	LMTK2_D523Gfs*24	HLA-A02:01	FLMPTTFLL	0.9964	0.5643	0.0025	1.8	0.0048	16.33	1/888	1/7086
INDEL	Breast	LMTK2_D523Gfs*24	HLA-B39:06	FLMPTTFLL	0.7003	0.9574	1.9129	285.4	0.1268	16.33	1/888	1/7086
INDEL	Breast	LMTK2_D523Gfs*24	HLA-C07:02	FLMPTTFLL	0.8373	0.9793	0.3075	131.9	0.0711	16.33	1/888	1/7086
INDEL	Breast	LMTK2_D523Gfs*24	HLA-C05:01	FLMPTTFLL	0.9593	0.9861	0.251	69.8	0.0377	16.33	1/888	1/7086
INDEL	Breast	LMTK2_D523Gfs*24	HLA-A02:01	FLLEATIIS	0.9885	0.5441	1.1738	52.2	0.6534	16.33	1/888	1/7086
INDEL	Breast	LMTK2_D523Gfs*24	HLA-A02:01	FLFLMPTTFL	0.9937	0.6723	0.2482	10.7	0.126	16.33	1/888	1/7086
INDEL	Breast	TMEM126A_S52Tfs*40	HLA-C07:02	SYNRLNLQM	0.7912	0.9043	0.3283	159.6	0.0971	44.56	1/888	1/7086
INDEL	Breast	LPCAT3_F305Lfs*6	HLA-A02:01	ILTGLGFNGL	0.9323	0.5773	1.1142	164.6	1.4617	16.88	1/888	1/7086
INDEL	Breast	SH2B1_H363_V364del	HLA-B44:02	METVDAQKAW	0.9997	0.7085	0.1898	13.6	0.009	19.04	1/888	1/7086
INDEL	Breast	LAMA2_I2297delinsNTPHLCQLLDF	HLA-A02:01	QLLDFTFTG	0.9392	0.6357	0.8884	250.3	1.9016	7.92	2/888	2/7086
INDEL	Breast	LAMA2_I2297delinsNTPHLCQLLDF	HLA-A02:01	QLLDFTFTG	0.9392	0.6357	0.8884	250.3	1.9016	7.92	2/888	2/7086
INDEL	Breast	KIAA2018_D1830_S1835dup	HLA-A31:01	GSDQVIGSQR	0.7834	0.5295	1.7317	289.7	1.5297	9.24	1/888	1/7086
INDEL	Breast	MCCC1_M39Ifs*42	HLA-B27:05	WRQRTIEVH	0.9982	0.5963	1.5614	339.8	0.9356	11.33	1/888	1/7086
INDEL	Breast	MCCC1_M39Ifs*42	HLA-A31:01	HYQGPHCKQR	0.9407	0.7416	1.1421	124.5	0.8851	11.33	1/888	1/7086
INDEL	Breast	MCCC1_M39Ifs*42	HLA-B27:05	RRNCLQGDAH	0.9925	0.7476	1.12	402.9	1.061	11.33	1/888	1/7086
INDEL	Breast	GATA3_S436Lfs*71	HLA-C02:02	LSFGPHHPL	0.737	0.9889	0.2745	271.3	0.1547	1259.09	1/888	1/7086
INDEL	Breast	CPNE1_C266Lfs*19	HLA-B27:05	RQSLALSPR	0.9965	0.6852	0.5637	461.4	1.1731	308.65	1/888	1/7086
INDEL	Breast	CPNE1_C266Lfs*19	HLA-B27:05	IRVKILRQSL	0.9996	0.8744	0.5213	141	0.4644	308.65	1/888	1/7086
INDEL	Breast	CPNE1_C266Lfs*19	HLA-B27:05	LRQSLALSPR	0.9997	0.588	1.0863	81.1	0.2697	308.65	1/888	1/7086
INDEL	Breast	CPNE1_C266Lfs*19	HLA-B27:05	LRQSLALSPRL	0.9999	0.762	1.0292	209.2	0.6447	308.65	1/888	1/7086
INDEL	Breast	MAP3K1_S497Ffs*60	HLA-C16:04	SSKPYSSSL	0.9992	0.966	0.2699	69.5	0.1903	117.17	1/888	1/7086
INDEL	Breast	MAP3K1_S497Ffs*60	HLA-A02:01	SLWLDHEGI	0.9317	0.611	0.3152	65.4	0.7868	117.17	1/888	1/7086
INDEL	Breast	MAP3K1_S497Ffs*60	HLA-C07:02	KRAILTLLI	0.9323	0.9381	0.4456	420.1	0.2761	117.17	1/888	1/7086
INDEL	Breast	MAP3K1_S497Ffs*60	HLA-C16:04	RAILTLLIM	0.9632	0.9829	0.4789	94.8	0.2797	117.17	1/888	1/7086
INDEL	Breast	MAP3K1_S497Ffs*60	HLA-C16:04	LIMELSKSL	0.9941	0.9882	0.719	161.2	0.4482	117.17	1/888	1/7086
INDEL	Breast	MAP3K1_S497Ffs*60	HLA-A02:01	FMISTATSCQV	0.9964	0.5948	0.9297	42.9	0.5534	117.17	1/888	1/7086
INDEL	Breast	MAP3K1_V1346del	HLA-C16:04	SVINYTEQL	0.9981	0.976	0.0932	59.7	0.159	117.17	1/888	1/7086
INDEL	Breast	RECK_V271Sfs*18	HLA-C16:04	WSHCTPSSL	0.9957	0.9877	0.9381	56.1	0.1473	13.82	1/888	1/7086
INDEL	Breast	EIF4G3_R459_K467del	HLA-B50:01	IEIQNKIEV	0.8224	0.597	0.1285	447.2	0.3113	10.12	1/888	1/7086
INDEL	Breast	RBM15_L793Pfs*45	HLA-B58:01	RVQLEAKW	0.9986	0.9899	0.5868	483.3	1.3955	6.99	1/888	1/7086
INDEL	Breast	RBM15_L793Pfs*45	HLA-B58:01	RSLSVSVW	0.9989	0.9664	0.2499	15.5	0.1048	6.99	1/888	1/7086
INDEL	Breast	RBM15_L793Pfs*45	HLA-B58:01	SVWTSPSW	0.9961	0.9804	0.5419	259.4	0.9393	6.99	1/888	1/7086
INDEL	Breast	RBM15_L793Pfs*45	HLA-B58:01	ICCRVTSKW	0.9849	0.8641	0.5741	109.8	0.5065	6.99	1/888	1/7086
INDEL	Breast	RBM15_L793Pfs*45	HLA-B58:01	VTSKWLVVF	0.9945	0.931	0.057	80.6	0.4092	6.99	1/888	1/7086
INDEL	Breast	RBM15_L793Pfs*45	HLA-A02:05	WLVVFLWRV	0.9781	0.9445	0.2636	207.6	1.2471	6.99	1/888	1/7086
INDEL	Breast	RBM15_L793Pfs*45	HLA-A02:05	FLWRVQLEA	0.9947	0.7468	0.2499	151.9	0.9575	6.99	1/888	1/7086
INDEL	Breast	RBM15_L793Pfs*45	HLA-B58:01	VSVWTSPSW	0.9991	0.9757	0.1285	4.2	0.0098	6.99	1/888	1/7086
INDEL	Breast	RBM15_L793Pfs*45	HLA-B58:01	TSKWLVVFLW	0.9989	0.9801	0.7473	46.8	0.2733	6.99	1/888	1/7086
INDEL	Breast	RBM15_L793Pfs*45	HLA-B58:01	SSRSLSVSVW	0.9992	0.9275	0.3089	18.1	0.1186	6.99	1/888	1/7086
INDEL	Breast	RBM15_L793Pfs*45	HLA-B58:01	SVSVWTSPSW	0.9949	0.974	0.5795	12.8	0.0819	6.99	1/888	1/7086
INDEL	Breast	RBM15_L793Pfs*45	HLA-B58:01	VTSKWLVVFLW	0.999	0.9775	0.651	34.8	0.22	6.99	1/888	1/7086
INDEL	Breast	RBM15_L793Pfs*45	HLA-B58:01	PSSRSLSVSVW	0.9972	0.9458	1.3306	396.2	1.229	6.99	1/888	1/7086
INDEL	Breast	RBM15_L793Pfs*45	HLA-B58:01	LSVSVWTSPSW	0.9985	0.9827	0.5779	8	0.0375	6.99	1/888	1/7086
INDEL	Breast	ACVR2A_C103Vfs*47	HLA-B58:01	TTSCSIPW	0.9906	0.9245	1.1086	271.9	0.9727	2.78	1/888	1/7086
INDEL	Breast	ACVR2A_C103Vfs*47	HLA-B58:01	RAICVMKSF	0.9924	0.7633	0.3398	32.1	0.206	2.78	1/888	1/7086
INDEL	Breast	ACVR2A_C103Vfs*47	HLA-B58:01	CVMKSFLIF	0.9031	0.6106	1.3108	394.4	1.2255	2.78	1/888	1/7086
INDEL	Breast	ACVR2A_C103Vfs*47	HLA-B58:01	KSFLIFRRW	0.9976	0.912	0.0096	9	0.0467	2.78	1/888	1/7086
INDEL	Breast	ACVR2A_C103Vfs*47	HLA-B58:01	ITTSCSIPW	0.9966	0.8768	0.3461	4.8	0.0152	2.78	1/888	1/7086
INDEL	Breast	ACVR2A_C103Vfs*47	HLA-C07:01	FRRWKSHSPL	0.9761	0.7483	1.8326	435	0.149	2.78	1/888	1/7086
INDEL	Breast	ACVR2A_C103Vfs*47	HLA-B58:01	KSHSPLQIQL	0.9964	0.8299	1.7557	103.9	0.4878	2.78	1/888	1/7086
INDEL	Breast	PNPLA8_G661Nfs*21	HLA-B58:01	VSLGTNFIL	0.9789	0.6384	0.68	92	0.4504	12.47	1/888	1/7086
INDEL	Breast	PNPLA8_G661Nfs*21	HLA-A02:05	FILQCLVEV	0.9971	0.9253	0.1149	23.2	0.1362	12.47	1/888	1/7086
INDEL	Breast	CLUH_R590Cfs*18	HLA-B58:01	RSWWTPSW	0.9977	0.9873	0.0888	13.9	0.09	15.13	1/888	1/7086
INDEL	Breast	CLUH_R590Cfs*18	HLA-B58:01	CARSWWTPSW	0.9912	0.9695	0.9036	28.4	0.1872	15.13	1/888	1/7086
INDEL	Breast	TP53_G108Vfs*15	HLA-B58:01	YQGSYVSVW	0.7078	0.9909	0.7726	265.9	0.9569	10.1	1/888	1/7086
INDEL	Breast	TP53_G108Vfs*15	HLA-B58:01	KTYQGSYVSVW	0.9998	0.9662	0.0084	8.5	0.0415	10.1	1/888	1/7086
INDEL	Breast	RIT1_M85Sfs*3	HLA-B13:02	GQAEFTASI	0.9782	0.7964	0.1821	265.2	0.0219	38.05	1/888	1/7086
INDEL	Breast	POLD1_P1102Lfs*22	HLA-C07:02	LRRFGPLDL	0.7464	0.9773	0.8813	270.4	0.1772	21.64	1/888	1/7086
INDEL	Breast	PLEKHA2_H176Pfs*26	HLA-B35:01	HPSKVSELH	0.9572	0.7171	0.7151	280.8	0.6176	7.94	1/888	1/7086
INDEL	Breast	PLEKHA2_H176Pfs*26	HLA-C15:02	KVSELHPHV	0.9996	0.8104	0.2996	141.5	0.1472	7.94	1/888	1/7086
INDEL	Breast	PLEKHA2_H176Pfs*26	HLA-B35:01	HPHVRLPCF	0.9798	0.7757	0.0697	156.6	0.421	7.94	1/888	1/7086
INDEL	Breast	GPS2_E55Gfs*42	HLA-B35:01	FPAAQESF	0.9698	0.9511	0.5941	104.8	0.3292	1.23	1/888	1/7086
INDEL	Breast	RPAP2_L587Sfs*4	HLA-A30:01	FTRFLDTSK	0.9406	0.8431	0.6137	62.6	0.3213	6.52	1/888	1/7086
INDEL	Breast	SEMA4C_S474Afs*28	HLA-A30:01	RAWCYLRAR	0.9705	0.9354	0.6273	411.2	1.7495	50.1	1/888	1/7086
INDEL	Breast	SEMA4C_S474Afs*28	HLA-B07:02	YLRARSCSL	0.9821	0.7777	0.9432	42.9	0.1517	50.1	1/888	1/7086
INDEL	Breast	SEMA4C_S474Afs*28	HLA-A30:01	RARSCSLPA	0.996	0.9289	0.5019	4.4	0.0083	50.1	1/888	1/7086
INDEL	Breast	SEMA4C_S474Afs*28	HLA-B07:02	RARSCSLPA	0.9963	0.6156	1.0863	73.3	0.2333	50.1	1/888	1/7086
INDEL	Breast	SEMA4C_S474Afs*28	HLA-A30:01	RSCSLPAPA	0.9214	0.959	1.3454	172.6	0.8322	50.1	1/888	1/7086
INDEL	Breast	SEMA4C_S474Afs*28	HLA-A24:23	SLPAPALSW	0.9768	0.8648	1.9339	154	1.0522	50.1	1/888	1/7086
INDEL	Breast	TP53_E204Sfs*43	HLA-B39:01	SRLRLALTV	0.9707	0.9026	0.2913	406.6	0.4038	167.41	1/888	1/7086
INDEL	Breast	TP53_E204Sfs*43	HLA-C07:02	SRLRLALTV	0.942	0.9589	0.1242	338.4	0.2243	167.41	2/888	2/7086
INDEL	Breast	TP53_E204Sfs*43	HLA-C07:02	SRLRLALTV	0.942	0.9589	0.1242	338.4	0.2243	167.41	2/888	2/7086
INDEL	Breast	AP4B1_V49Cfs*63	HLA-B15:03	HQYAVQRL	0.9912	0.8448	0.0734	149.2	1.8464	5.56	1/888	1/7086
INDEL	Breast	AP4B1_V49Cfs*63	HLA-B15:03	RSGSPGHQY	0.6752	0.6979	0.4018	115.4	1.5541	5.56	1/888	1/7086
INDEL	Breast	AP4B1_V49Cfs*63	HLA-B15:03	HQYAVQRLL	0.94	0.7633	0.1465	11.7	0.1892	5.56	1/888	1/7086
INDEL	Breast	AP4B1_V49Cfs*63	HLA-C12:03	HQYAVQRLL	0.931	0.9812	0.3987	94.6	0.4276	5.56	1/888	1/7086
INDEL	Breast	POMGNT2_P552Lfs*52	HLA-C12:03	HTFTENIKL	0.6989	0.9776	0.1898	168.2	0.71	33.64	1/888	1/7086
INDEL	Breast	POMGNT2_P552Lfs*52	HLA-A02:05	KLLHHLPGV	0.997	0.7743	0.0201	28.7	0.1733	33.64	1/888	1/7086
INDEL	Breast	POMGNT2_P552Lfs*52	HLA-B15:03	LQQDPPGTL	0.6884	0.9641	0.5657	33.5	0.6143	33.64	1/888	1/7086
INDEL	Breast	PLXND1_P1513Hfs*46	HLA-C12:03	QARPATHSV	0.9716	0.9858	0.4614	91.3	0.4134	64.25	1/888	1/7086
INDEL	Breast	PTK2B_N446Ifs*9	HLA-C12:03	EVYEGVYTI	0.642	0.9576	0.0495	73.6	0.3449	6.6	1/888	1/7086
INDEL	Breast	PTK2B_N446Ifs*9	HLA-C12:03	YTITKGRKSM	0.9803	0.9643	1.388	350.1	1.2156	6.6	1/888	1/7086
INDEL	Breast	GTPBP1_I240Rfs*19	HLA-C03:03	KSLPSSTWL	0.9832	0.9964	0.9762	206.3	0.5747	18.74	1/888	1/7086
INDEL	Breast	GTPBP1_I240Rfs*19	HLA-C03:03	LPSSTWLVM	0.9678	0.9879	1.1307	305.6	0.7311	18.74	1/888	1/7086
INDEL	Breast	KMT2C_S4081Ifs*12	HLA-B07:02	GPRSGLII	0.9995	0.6614	0.8024	173.7	0.43	11.89	1/888	1/7086
INDEL	Breast	ZBTB10_R583Dfs*14	HLA-C12:03	TTKDLFIIF	0.8576	0.9799	0.0697	414.8	1.3707	12.44	1/888	1/7086
INDEL	Breast	EFR3A_R628Qfs*24	HLA-C12:03	FYQSISSEI	0.549	0.9587	1.6471	462.7	1.4724	27.73	1/888	1/7086
INDEL	Breast	EFR3A_R628Qfs*24	HLA-C12:03	ISSEISACF	0.7433	0.9753	0.3837	98.3	0.4428	27.73	1/888	1/7086
INDEL	Breast	PTEN_V166Sfs*14	HLA-C12:03	SQSEALCVL	0.9744	0.9605	0.9014	373.9	1.2788	15.24	1/888	1/7086
INDEL	Breast	PTEN_V166Sfs*14	HLA-C12:03	YSQSEALCVL	0.9937	0.9654	1.5203	374.8	1.2808	15.24	1/888	1/7086
INDEL	Breast	IRF2BP2_S449Ffs*7	HLA-B35:01	DANQVHFHY	0.9933	0.8047	0.0835	21.6	0.0892	229.49	1/888	1/7086
INDEL	Breast	CCDC171_L977Rfs*29	HLA-A03:01	RSGAPLTTLR	0.9385	0.6139	1.9055	490.8	1.1963	1.8	1/888	1/7086
INDEL	Breast	ITIH6_S627Wfs*122	HLA-B07:02	WPRGKHSSA	0.998	0.5837	0.6973	13.3	0.039	4.43	2/888	2/7086
INDEL	Breast	ITIH6_S627Wfs*122	HLA-B07:02	WPRGKHSSA	0.998	0.5837	0.6973	13.3	0.039	4.43	2/888	2/7086
INDEL	Breast	ITIH6_S627Wfs*122	HLA-B07:02	WPRGKHSSASL	1	0.697	0.4246	7.7	0.0145	4.43	2/888	2/7086
INDEL	Breast	ITIH6_S627Wfs*122	HLA-B07:02	WPRGKHSSASL	1	0.697	0.4246	7.7	0.0145	4.43	2/888	2/7086
INDEL	Breast	PARP9_I275Ffs*4	HLA-B15:16	MSNLKEFTW	0.9983	0.9301	0.0121	58.9	0.186	40.45	1/888	1/7086
INDEL	Breast	PARP9_I275Ffs*4	HLA-B53:01	MSNLKEFTW	0.9869	0.6447	0.051	65.5	0.0867	40.45	1/888	1/7086
INDEL	Breast	PARP9_I275Ffs*4	HLA-B15:16	MMSNLKEFTW	0.9941	0.973	0.5094	220.8	0.7976	40.45	1/888	1/7086
INDEL	Breast	PARP9_I275Ffs*4	HLA-B53:01	MMSNLKEFTW	0.9706	0.7146	1.0678	92.4	0.1151	40.45	1/888	1/7086
INDEL	Breast	MPHOSPH10_E600Kfs*5	HLA-B27:07	RRKLLKRAV	0.9973	0.5413	0.7767	156.1	0.8825	42.74	1/888	1/7086
INDEL	Breast	GYLTL1B_M119Ifs*14	HLA-C15:02	KSISSTGKI	0.998	0.7753	0.5815	187.9	0.205	129.16	1/888	1/7086
INDEL	Breast	CENPJ_E548Gfs*14	HLA-A32:01	KGLNLLLTF	0.9806	0.9854	0.2793	186.9	0.3317	3.7	1/888	1/7086
INDEL	Breast	SEZ6L_A946Gfs*60	HLA-C15:02	YLHPGPHHL	0.9601	0.9675	0.0267	318.3	0.3474	8.31	1/888	1/7086
INDEL	Breast	SEZ6L_A946Gfs*60	HLA-C15:02	LTAGRSLHL	0.9991	0.9515	0.3075	111.5	0.1099	8.31	1/888	1/7086
INDEL	Breast	SEZ6L_A946Gfs*60	HLA-A32:01	RSLHLHHKM	0.9921	0.8893	0.2382	146.2	0.2612	8.31	1/888	1/7086
INDEL	Breast	SEZ6L_A946Gfs*60	HLA-C15:02	RSLHLHHKM	0.9772	0.8821	0.3427	254	0.276	8.31	1/888	1/7086
INDEL	Breast	SEZ6L_A946Gfs*60	HLA-B27:07	GRGEHGPGYL	0.9955	0.7741	0.7081	159.1	0.8931	8.31	1/888	1/7086
INDEL	Breast	SEZ6L_A946Gfs*60	HLA-B27:07	GRSLHLHHKM	0.9984	0.553	0.6674	51.2	0.4145	8.31	1/888	1/7086
INDEL	Breast	CCNL1_E49_S51del	HLA-A02:01	LIGDRLYSL	0.9651	0.5804	0.2543	163.4	1.4557	16.07	1/888	1/7086
INDEL	Breast	CCNL1_E49_S51del	HLA-C02:02	YSLTIDHSL	0.5498	0.9423	0.1718	340.6	0.2115	16.07	1/888	1/7086
INDEL	Breast	CCNL1_E49_S51del	HLA-A02:01	ILIGDRLYSL	0.9956	0.653	0.0794	18.8	0.2539	16.07	1/888	1/7086
INDEL	Breast	ENPEP_H18Qfs*12	HLA-B27:05	KRYCIQTKQ	0.9977	0.8362	0.8169	305.9	0.8639	4.64	1/888	1/7086
INDEL	Breast	ENPEP_H18Qfs*12	HLA-B27:05	KRYCIQTKQW	0.9996	0.8021	0.4183	129	0.4269	4.64	1/888	1/7086
INDEL	Breast	TRIM25_S540Rfs*60	HLA-B27:05	WRKPCPPPR	0.9914	0.7519	0.9226	215.8	0.6624	9.4	1/888	1/7086
INDEL	Breast	CIB1_S47Efs*44	HLA-B07:02	QPSRAQGQPL	0.9973	0.5759	0.433	11.1	0.0299	114.62	1/888	1/7086
INDEL	Breast	TP53_I162_Y163delinsN	HLA-B35:01	MANKQSQHM	0.9933	0.9369	0.879	42.6	0.1649	107.55	1/888	1/7086
INDEL	Breast	RTN3_V690Efs*34	HLA-C02:02	KSYMKMSPV	0.7995	0.9416	1.7671	374.3	0.2406	178.15	2/888	2/7086
INDEL	Breast	RTN3_V690Efs*34	HLA-C02:02	KSYMKMSPV	0.7995	0.9416	1.7671	374.3	0.2406	178.15	2/888	2/7086
INDEL	Breast	RTN3_V690Efs*34	HLA-C02:02	YMKMSPVVL	0.7568	0.9701	0.9867	451.1	0.3052	178.15	2/888	2/7086
INDEL	Breast	RTN3_V690Efs*34	HLA-C02:02	YMKMSPVVL	0.7568	0.9701	0.9867	451.1	0.3052	178.15	2/888	2/7086
INDEL	Breast	RTN3_V690Efs*34	HLA-C02:02	KMSPVVLKL	0.7501	0.9913	0.024	243.1	0.138	178.15	2/888	2/7086
INDEL	Breast	RTN3_V690Efs*34	HLA-C02:02	KMSPVVLKL	0.7501	0.9913	0.024	243.1	0.138	178.15	2/888	2/7086
INDEL	Breast	MYB_W95Lfs*37	HLA-A31:01	LIKGPLDQR	0.903	0.7094	0.1963	135.6	0.9367	59.95	1/888	1/7086
INDEL	Breast	MYB_W95Lfs*37	HLA-A31:01	LIKGPLDQRR	0.9226	0.7453	0.8127	399.7	1.8395	59.95	1/888	1/7086
INDEL	Breast	FANCB_I418Nfs*18	HLA-C14:02	YFKILQSF	0.9399	0.9337	0.3866	403.3	1.1215	1.51	1/888	1/7086
INDEL	Breast	FANCB_I418Nfs*18	HLA-A31:01	QSFNKPSSR	0.9932	0.5024	0.3199	25.4	0.1931	1.51	1/888	1/7086
INDEL	Breast	FANCB_I418Nfs*18	HLA-A31:01	SFNKPSSRKR	0.9602	0.6923	1.0341	201	1.2114	1.51	1/888	1/7086
INDEL	Breast	FANCB_I418Nfs*18	HLA-A31:01	ILQSFNKPSSR	0.9846	0.5851	1.6513	193.5	1.1792	1.51	1/888	1/7086
INDEL	Breast	ZBTB22_A11Qfs*29	HLA-B35:01	YPCQQLQWY	0.9949	0.5424	0.2382	41.8	0.1618	48.25	1/888	1/7086
INDEL	Breast	ZBTB22_A11Qfs*29	HLA-B35:01	YPCQQLQWYM	0.9897	0.7414	1.388	91.5	0.3001	48.25	1/888	1/7086
INDEL	Breast	FOXA1_S194Afs*127	HLA-C16:01	GAAAPRAAL	0.9467	0.9881	0.0452	69.4	0.2407	542.19	1/888	1/7086
INDEL	Breast	FOXA1_S194Afs*127	HLA-C16:01	AARTPLAPL	0.7324	0.9926	0.3753	65.7	0.2268	542.19	1/888	1/7086
INDEL	Breast	FOXA1_S194Afs*127	HLA-C16:01	RAARTPLAPL	0.9738	0.9916	1.2177	159.5	0.542	542.19	1/888	1/7086
INDEL	Breast	SIN3B_Y545Ffs*28	HLA-C16:01	RAIFIASM	0.9985	0.9854	1.0016	178.2	0.5963	32.69	1/888	1/7086
INDEL	Breast	SIN3B_Y545Ffs*28	HLA-C16:01	ASRRTLSPL	0.7591	0.9854	1.1472	159.8	0.543	32.69	1/888	1/7086
INDEL	Breast	SIN3B_Y545Ffs*28	HLA-C16:01	RTLSPLSPL	0.9895	0.9867	0.6018	22.8	0.0534	32.69	1/888	1/7086
INDEL	Breast	SIN3B_Y545Ffs*28	HLA-B44:03	SEVIQRRAIF	0.9979	0.8621	0.3332	252.2	0.2597	32.69	1/888	1/7086
INDEL	Breast	GTPBP1_R386Pfs*11	HLA-A02:01	NLLSPPHQL	0.911	0.5475	0.259	147.3	1.3638	26.47	1/888	1/7086
INDEL	Breast	LYSMD1_E127Rfs*50	HLA-B35:01	RPSMTSLPL	0.9497	0.6245	1.5116	93.1	0.3037	20.04	1/888	1/7086
INDEL	Breast	LYSMD1_E127Rfs*50	HLA-C03:04	MTSLPLISL	0.9997	0.9809	0.1609	73.9	0.2937	20.04	1/888	1/7086
INDEL	Breast	LYSMD1_E127Rfs*50	HLA-B35:01	LPLISLRSL	0.9832	0.5296	0.5601	252.3	0.5773	20.04	1/888	1/7086
INDEL	Breast	CSAD_F465Sfs*10	HLA-C03:04	FSVWLWPTL	0.9987	0.9951	0.433	22.4	0.0971	8.57	1/888	1/7086
INDEL	Breast	TBC1D2_E399Gfs*50	HLA-C03:04	SSRSSASSL	0.9961	0.9949	0.7702	197.7	0.5594	25.85	1/888	1/7086
INDEL	Breast	TBC1D2_E399Gfs*50	HLA-C03:04	TSRTPLTSL	0.9986	0.9827	0.3199	239.5	0.6315	25.85	1/888	1/7086
INDEL	Breast	TBC1D2_E399Gfs*50	HLA-C07:01	SRTPLTSLL	0.9991	0.5423	0.0875	47	0.014	25.85	1/888	1/7086
INDEL	Breast	TBC1D2_E399Gfs*50	HLA-C03:04	TSLLCAPTL	0.9976	0.9811	0.8607	384.5	0.8383	25.85	1/888	1/7086
INDEL	Breast	TBC1D2_E399Gfs*50	HLA-B15:01	SLREQQVQGY	0.9999	0.8107	0.148	165.4	0.7897	25.85	1/888	1/7086
INDEL	Breast	ERGIC1_T239Gfs*40	HLA-B27:05	RRRHPGLMH	0.9966	0.8263	0.7286	498.5	1.243	25.3	1/888	1/7086
INDEL	Breast	ERGIC1_T239Gfs*40	HLA-B27:05	RRHPGLMHL	0.9999	0.6987	0.0383	29.2	0.0609	25.3	1/888	1/7086
INDEL	Breast	ERGIC1_T239Gfs*40	HLA-B27:05	FRYDLSPIGQ	0.9984	0.8412	0.367	453.9	1.1585	25.3	1/888	1/7086
INDEL	Breast	ERGIC1_T239Gfs*40	HLA-B27:05	RRRHPGLMHL	0.9998	0.6713	0.5002	44.8	0.1271	25.3	1/888	1/7086
INDEL	Breast	ERGIC1_T239Gfs*40	HLA-B27:05	RRHPGLMHLH	0.9999	0.7237	0.3495	51.5	0.1631	25.3	1/888	1/7086
INDEL	Breast	ERGIC1_T239Gfs*40	HLA-B27:05	HRRRHPGLMHL	0.9998	0.6134	0.7226	345.7	0.9485	25.3	1/888	1/7086
INDEL	Breast	ERGIC1_T239Gfs*40	HLA-B27:05	RRRHPGLMHLH	0.9999	0.6206	0.7172	399.1	1.0541	25.3	1/888	1/7086
INDEL	Breast	IFT122_E632Kfs*23	HLA-A02:01	KLFKKPTRL	0.9491	0.7491	0.024	97.3	1.0401	13.68	1/888	1/7086
INDEL	Breast	IFT122_E632Kfs*23	HLA-A02:01	LLAWVSQTL	0.9855	0.5917	0.1182	20.2	0.275	13.68	1/888	1/7086
INDEL	Breast	IFT122_E632Kfs*23	HLA-A02:01	RLLAWVSQTL	0.987	0.6184	0.2197	57.6	0.7073	13.68	1/888	1/7086
INDEL	Breast	KIAA1147_I288_G290del	HLA-B35:01	LPGTIPESKPF	0.9977	0.9317	1.3988	463.7	0.8405	24.03	1/888	1/7086
INDEL	Breast	GIMAP7_F34Lfs*29	HLA-A02:01	ILGEEILIL	0.9929	0.6088	0.4018	42.1	0.5445	43.33	1/888	1/7086
INDEL	Breast	GIMAP7_F34Lfs*29	HLA-B07:02	LPKLLPRTV	0.9932	0.5465	0.0109	101.4	0.2995	43.33	1/888	1/7086
INDEL	Breast	GIMAP7_F34Lfs*29	HLA-A02:01	LLPKLLPRTV	0.9429	0.8089	0.9735	79	0.8992	43.33	1/888	1/7086
INDEL	Breast	GIMAP7_F34Lfs*29	HLA-A02:01	ILGEEILILEL	0.9992	0.5629	0.721	175.3	1.5166	43.33	1/888	1/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-B07:02	APAIQPVL	0.9964	0.7344	0.0255	100.2	0.2968	1548.34	2/888	2/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-B35:01	HAHADAPAI	0.8806	0.9418	0.6837	193.4	0.4819	1548.34	3/888	3/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-A02:01	AIQPVLWTT	0.7836	0.8093	1.192	249.4	1.8972	1548.34	3/888	3/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-B07:02	QPVLWTTPPL	0.9713	0.6432	0.7226	32.7	0.1156	1548.34	2/888	2/7086
INDEL	Breast	ACTG1_W340Dfs*18	HLA-A02:01	WLHPGLTVHL	0.9835	0.615	0.2213	63.9	0.7715	7998.11	1/888	1/7086
INDEL	Breast	UBE4B_A444Sfs*52	HLA-C07:02	TRLPNTAQV	0.7984	0.9537	0.0697	374.7	0.2472	14.44	1/888	1/7086
INDEL	Breast	UBE4B_A444Sfs*52	HLA-C16:01	RLPNTAQVL	0.9423	0.9728	0.1855	268.2	0.8597	14.44	1/888	1/7086
INDEL	Breast	UBE4B_A444Sfs*52	HLA-A02:05	NTAQVLAAA	0.8513	0.5372	0.3137	50	0.3288	14.44	1/888	1/7086
INDEL	Breast	UBE4B_A444Sfs*52	HLA-C16:01	TAQVLAAAV	0.5515	0.991	0.7702	427.7	1.2331	14.44	1/888	1/7086
INDEL	Breast	UBE4B_A444Sfs*52	HLA-A02:05	AQVLAAAVL	0.808	0.8329	1.6929	310.2	1.7277	14.44	1/888	1/7086
INDEL	Breast	UBE4B_A444Sfs*52	HLA-C16:01	AAAVLPSAV	0.8444	0.9838	0.3787	123.1	0.4198	14.44	1/888	1/7086
INDEL	Breast	UBE4B_A444Sfs*52	HLA-A02:05	VLPSAVYAV	0.9957	0.6027	0.0062	11	0.0391	14.44	1/888	1/7086
INDEL	Breast	UBE4B_A444Sfs*52	HLA-B44:03	SEQHPLTVHI	0.9884	0.7971	0.348	317.6	0.315	14.44	1/888	1/7086
INDEL	Breast	UBE4B_A444Sfs*52	HLA-A02:05	NTAQVLAAAV	0.9639	0.8262	0.8127	80.9	0.5244	14.44	1/888	1/7086
INDEL	Breast	UBE4B_A444Sfs*52	HLA-A02:05	LAAAVLPSAV	0.9667	0.5018	0.6488	44.3	0.293	14.44	1/888	1/7086
INDEL	Breast	UBE4B_A444Sfs*52	HLA-A02:05	AVLPSAVYAV	0.9964	0.6633	0.1317	65.5	0.4176	14.44	1/888	1/7086
INDEL	Breast	CDH1_S19Pfs*38	HLA-C16:01	RSPATLAL	0.9921	0.9425	0.5886	312.8	0.972	31.79	1/888	1/7086
INDEL	Breast	CDH1_S19Pfs*38	HLA-C07:02	SRSPATLAL	0.8334	0.8919	0.0131	53.5	0.0248	31.79	1/888	1/7086
INDEL	Breast	CDH1_S19Pfs*38	HLA-C16:01	SRSPATLAL	0.8673	0.956	0.1793	414.4	1.2031	31.79	1/888	1/7086
INDEL	Breast	CDH1_S19Pfs*38	HLA-B07:02	SARSRSPATL	0.9922	0.6511	1.004	99.8	0.2961	31.79	1/888	1/7086
INDEL	Breast	CDH1_S19Pfs*38	HLA-C16:01	RSRSPATLAL	0.9889	0.9533	0.4967	115.1	0.3924	31.79	1/888	1/7086
INDEL	Breast	TSPAN18_V229Tfs*25	HLA-C03:03	LAIGTGHRAF	0.9992	0.9686	0.3822	361.1	0.8043	11.27	1/888	1/7086
INDEL	Breast	EPN2_Q480Lfs*9	HLA-C03:03	ESVTSLPSL	0.9984	0.9872	0.9525	384.6	0.8385	10.01	1/888	1/7086
INDEL	Breast	EPN2_Q480Lfs*9	HLA-C03:03	TSLPSLTPL	0.9998	0.9922	0.3495	12.2	0.0437	10.01	1/888	1/7086
INDEL	Breast	EPN2_Q480Lfs*9	HLA-C03:03	LPSLTPLSL	0.9977	0.9771	0.2913	190.2	0.5454	10.01	1/888	1/7086
INDEL	Breast	CARD17_G88Sfs*27	HLA-C12:02	YTRFSNSTSF	0.9991	0.92	0.3413	94.9	0.1152	1.01	1/888	1/7086
INDEL	Breast	CARD17_G88Sfs*27	HLA-C06:02	TRFSNSTSFL	0.9436	0.9886	0.6038	218.2	0.0782	1.01	1/888	1/7086
INDEL	Breast	RBM47_Y44Lfs*64	HLA-C03:04	LALMERTGL	0.9993	0.9828	0.9297	74.3	0.2951	4.2	1/888	1/7086
INDEL	Breast	CTPS2_I145Lfs*60	HLA-B27:05	WRRLDNSSL	0.9723	0.9225	1.0214	236.6	0.7148	22.23	1/888	1/7086
INDEL	Breast	CTPS2_I145Lfs*60	HLA-B27:05	RRLDNSSLR	0.9993	0.8647	0.4397	59.6	0.1956	22.23	1/888	1/7086
INDEL	Breast	CTPS2_I145Lfs*60	HLA-B27:05	RRKERISVI	0.9993	0.8707	0.5365	235.7	0.7127	22.23	1/888	1/7086
INDEL	Breast	CTPS2_I145Lfs*60	HLA-B27:05	ERISVISTL	0.9995	0.8434	0.2239	253.4	0.7522	22.23	1/888	1/7086
INDEL	Breast	CTPS2_I145Lfs*60	HLA-C03:03	ISVISTLAL	0.9995	0.9821	0.356	11	0.0387	22.23	1/888	1/7086
INDEL	Breast	CTPS2_I145Lfs*60	HLA-C03:03	LALSHSSVL	0.9997	0.9935	0.1369	4.6	0.0156	22.23	1/888	1/7086
INDEL	Breast	CTPS2_I145Lfs*60	HLA-B27:05	WRRLDNSSLR	0.997	0.9165	1.3768	187.5	0.586	22.23	1/888	1/7086
INDEL	Breast	CTPS2_I145Lfs*60	HLA-B27:05	RRLDNSSLRR	0.9999	0.7716	0.4845	39.2	0.1053	22.23	1/888	1/7086
INDEL	Breast	CTPS2_I145Lfs*60	HLA-B27:05	KERISVISTL	0.9943	0.8553	1.6513	35	0.0848	22.23	1/888	1/7086
INDEL	Breast	CTPS2_I145Lfs*60	HLA-B27:05	WRRLDNSSLRR	0.9991	0.8299	1.0168	483.4	1.2151	22.23	1/888	1/7086
INDEL	Breast	CTPS2_I145Lfs*60	HLA-B27:05	RRLDNSSLRRK	0.9998	0.8708	0.2996	142	0.4673	22.23	1/888	1/7086
INDEL	Breast	CD164_S44_A45dup	HLA-B07:02	SASAPVTSL	0.9844	0.5832	0.193	236.4	0.5274	199.92	1/888	1/7086
INDEL	Breast	CD164_S44_A45dup	HLA-C03:04	SASAPVTSL	0.9997	0.9945	0.0822	8.4	0.0306	199.92	1/888	1/7086
INDEL	Breast	CD164_S44_A45dup	HLA-C03:04	ASAPVTSLPL	0.9996	0.9834	0.5757	493.2	1.0028	199.92	1/888	1/7086
INDEL	Breast	MAP3K1_I1216Nfs*23	HLA-B15:01	YTRDSTRTY	0.9989	0.7085	0.057	40.1	0.1956	126.58	1/888	1/7086
INDEL	Breast	MAP3K1_I1216Nfs*23	HLA-C03:03	RTYQSKTTV	0.7889	0.9662	0.9315	222.2	0.6016	126.58	1/888	1/7086
INDEL	Breast	CDH1_P339Lfs*17	HLA-C07:02	LRIPWWFKL	0.9644	0.9807	0.3057	88.7	0.0479	18.61	1/888	1/7086
INDEL	Breast	SLC9B2_F323Sfs*27	HLA-A69:01	FSFSTFQAV	0.9965	0.8426	0.3639	16.9	0.0587	2.18	1/888	1/7086
INDEL	Breast	SLC9B2_F323Sfs*27	HLA-B58:01	CVREHSLCW	0.9764	0.8588	0.5941	233.3	0.8693	2.18	1/888	1/7086
INDEL	Breast	SLC9B2_F323Sfs*27	HLA-B58:01	ATGSVLGFSF	0.9868	0.9915	0.9687	162	0.6656	2.18	1/888	1/7086
INDEL	Breast	SLC9B2_F323Sfs*27	HLA-B58:01	LCVREHSLCW	0.9964	0.8862	1.0781	252.4	0.9201	2.18	1/888	1/7086
INDEL	Breast	SLC9B2_F323Sfs*27	HLA-B58:01	VATGSVLGFSF	0.9958	0.9829	1.6471	458.5	1.3496	2.18	1/888	1/7086
INDEL	Breast	GGNBP2_Q370Pfs*42	HLA-C07:02	FLLPYKQQM	0.7832	0.9838	0.4614	323.3	0.214	21.43	1/888	1/7086
INDEL	Breast	GGNBP2_Q370Pfs*42	HLA-C03:04	FLLPYKQQM	0.9868	0.9915	0.3152	95.7	0.353	21.43	1/888	1/7086
INDEL	Breast	ABCF2_R317Afs*63	HLA-C15:02	RSDCTHEEL	0.9918	0.9526	0.1285	454.1	0.4821	70.9	1/888	1/7086
INDEL	Breast	ABCF2_R317Afs*63	HLA-C08:02	RSDCTHEEL	0.9999	0.9771	0.051	348.7	0.038	70.9	1/888	1/7086
INDEL	Breast	NF1_R2119Qfs*10	HLA-A32:01	LSLQSFHTW	0.9882	0.9974	0.2165	145.6	0.26	15.1	1/888	1/7086
INDEL	Breast	TASP1_G42dup	HLA-B40:01	KEKRGGGFVL	0.9709	0.5921	0.3657	120.2	0.278	12.21	1/888	1/7086
INDEL	Breast	FOXA1_L415Afs*143	HLA-C03:03	RALSPGAGV	0.8486	0.9866	0.7833	129.1	0.4265	641.41	1/888	1/7086
INDEL	Breast	FOXA1_L415Afs*143	HLA-C03:03	RALSPGAGVL	0.995	0.9952	0.3941	187	0.5393	641.41	1/888	1/7086
INDEL	Breast	CNOT1_L2110Ffs*11	HLA-A02:01	FVITIMGSV	0.9761	0.6963	0.3184	16.9	0.217	60.4	1/888	1/7086
INDEL	Breast	CNOT1_L2110Ffs*11	HLA-C03:03	FVITIMGSV	0.858	0.9952	1.5203	240.1	0.6324	60.4	1/888	1/7086
INDEL	Breast	CNOT1_L2110Ffs*11	HLA-C03:03	VITIMGSVM	0.9474	0.9939	1.4215	425.6	0.8935	60.4	1/888	1/7086
INDEL	Breast	CNOT1_L2110Ffs*11	HLA-A02:01	LLHDFPEFFV	0.9971	0.7998	0.0452	5.1	0.0358	60.4	1/888	1/7086
INDEL	Breast	CNOT1_L2110Ffs*11	HLA-C03:03	FVITIMGSVM	0.9974	0.9946	1.156	293.9	0.7141	60.4	1/888	1/7086
INDEL	Breast	CNOT1_L2110Ffs*11	HLA-A02:01	VLLHDFPEFFV	0.9976	0.8191	1.8524	25.7	0.3519	60.4	1/888	1/7086
INDEL	Breast	CNOT1_L2110Ffs*11	HLA-A02:01	LLHDFPEFFVI	0.9714	0.7716	0.7399	108.6	1.1138	60.4	1/888	1/7086
INDEL	Breast	ANKRD12_S596Cfs*5	HLA-A02:01	FLPESSCKI	0.9553	0.7218	0.0441	21.6	0.2956	20.96	1/888	1/7086
INDEL	Breast	ANKRD12_S596Cfs*5	HLA-A02:01	FLPESSCKIL	0.7699	0.7312	0.5195	233.2	1.811	20.96	1/888	1/7086
INDEL	Breast	HERC1_R4402Pfs*14	HLA-B07:02	RARLPTSL	0.9994	0.6905	0.557	72.9	0.2323	31.01	1/888	1/7086
INDEL	Breast	HERC1_R4402Pfs*14	HLA-C07:02	VRARLPTSL	0.9083	0.9732	0.1498	121.9	0.0657	31.01	1/888	1/7086
INDEL	Breast	SLC43A2_S177Tfs*9	HLA-C07:02	LRTFGPRLL	0.8161	0.9819	0.4397	142.9	0.0801	9.7	1/888	1/7086
INDEL	Breast	RBMS1_N159Ifs*92	HLA-C17:01	SMDEQELEI	0.6958	0.8102	0.5213	390.3	0.1036	26.06	1/888	1/7086
INDEL	Breast	RBMS1_N159Ifs*92	HLA-A30:01	KLFLQGYYV	0.9269	0.9774	1.6615	203.2	0.97	26.06	1/888	1/7086
INDEL	Breast	RBMS1_N159Ifs*92	HLA-C16:01	QGYYVIPVV	0.5281	0.9761	1.9129	417.7	1.2106	26.06	1/888	1/7086
INDEL	Breast	RBMS1_N159Ifs*92	HLA-C16:01	YVIPVVQVV	0.9645	0.9743	0.0109	43.7	0.1339	26.06	1/888	1/7086
INDEL	Breast	RBMS1_N159Ifs*92	HLA-C16:01	VVQVVVLAL	0.847	0.9729	0.6314	285.1	0.9046	26.06	1/888	1/7086
INDEL	Breast	RBMS1_N159Ifs*92	HLA-A30:01	RTQTNTSLM	0.8476	0.6173	0.645	62.8	0.3225	26.06	1/888	1/7086
INDEL	Breast	RBMS1_N159Ifs*92	HLA-C16:01	RTQTNTSLM	0.8198	0.9314	0.8043	84.1	0.294	26.06	1/888	1/7086
INDEL	Breast	RBMS1_N159Ifs*92	HLA-B42:01	IPVVQVVVLAL	0.8359	0.6537	0.879	113.1	0.4819	26.06	1/888	1/7086
INDEL	Breast	RBMS1_N159Ifs*92	HLA-B42:01	LPPQNLYCVSL	0.8803	0.5766	0.8562	344.7	0.9769	26.06	1/888	1/7086
INDEL	Breast	TNFAIP3_K96Vfs*24	HLA-C16:01	KLVALVTAI	0.7416	0.9853	0.9787	452	1.2853	27.13	1/888	1/7086
INDEL	Breast	TNFAIP3_K96Vfs*24	HLA-B42:01	TAIASCMPL	0.7546	0.6481	1.4566	283.2	0.8624	27.13	1/888	1/7086
INDEL	Breast	TNFAIP3_K96Vfs*24	HLA-C16:01	TAIASCMPL	0.9366	0.9802	0.5637	33.3	0.0952	27.13	1/888	1/7086
INDEL	Breast	TNFAIP3_K96Vfs*24	HLA-B42:01	MPLLSTCGA	0.7738	0.8917	0.8378	97.5	0.4349	27.13	1/888	1/7086
INDEL	Breast	TNFAIP3_K96Vfs*24	HLA-B42:01	MPLLSTCGAF	0.7836	0.8923	0.6429	17.2	0.0735	27.13	1/888	1/7086
INDEL	Breast	GATA3_M400Vfs*106	HLA-B42:01	LPEPHLAL	0.9959	0.8317	0.3413	41.5	0.2077	946.03	1/888	1/7086
INDEL	Breast	GATA3_M400Vfs*106	HLA-B42:01	APAIQPVL	0.8753	0.7178	0.0214	92.7	0.4191	946.03	1/888	1/7086
INDEL	Breast	GATA3_M400Vfs*106	HLA-B42:01	NPAALSRHV	0.8299	0.6087	0.7399	102.8	0.4518	946.03	1/888	1/7086
INDEL	Breast	GATA3_M400Vfs*106	HLA-C16:01	VLPEPHLAL	0.9937	0.9849	0.0523	155.2	0.5286	946.03	1/888	1/7086
INDEL	Breast	GATA3_M400Vfs*106	HLA-C17:01	VLPEPHLAL	0.7082	0.9706	0.0495	356.6	0.0942	946.03	1/888	1/7086
INDEL	Breast	GATA3_M400Vfs*106	HLA-B42:01	EPHLALQPL	0.8917	0.8905	0.5181	25.4	0.1219	946.03	1/888	1/7086
INDEL	Breast	GATA3_M400Vfs*106	HLA-C16:01	HAHADAPAI	0.6247	0.9923	0.4167	127.5	0.4362	946.03	1/888	1/7086
INDEL	Breast	GATA3_M400Vfs*106	HLA-B42:01	NPAALSRHVL	0.9836	0.6737	0.184	13.4	0.0481	946.03	1/888	1/7086
INDEL	Breast	GATA3_M400Vfs*106	HLA-C16:01	HVLPEPHLAL	0.9971	0.9864	0.3577	383.6	1.124	946.03	1/888	1/7086
INDEL	Breast	GATA3_M400Vfs*106	HLA-B42:01	QPVLWTTPPL	0.8902	0.9092	0.5982	21.6	0.102	946.03	1/888	1/7086
INDEL	Breast	GATA3_M400Vfs*106	HLA-B42:01	LPEPHLALQPL	0.9013	0.9381	0.4951	73.9	0.3494	946.03	1/888	1/7086
INDEL	Breast	PLIN1_F319delinsCECSRSPETCLGVKMRV	HLA-C16:01	RVSEVAAL	0.9995	0.9551	0.6137	436.7	1.2528	2.29	1/888	1/7086
INDEL	Breast	PLIN1_F319delinsCECSRSPETCLGVKMRV	HLA-A30:01	GVKMRVSEV	0.9899	0.895	1.0445	393.7	1.6861	2.29	1/888	1/7086
INDEL	Breast	PLIN1_F319delinsCECSRSPETCLGVKMRV	HLA-A30:01	KMRVSEVAA	0.9777	0.9061	0.5868	17.1	0.0627	2.29	1/888	1/7086
INDEL	Breast	PLIN1_F319delinsCECSRSPETCLGVKMRV	HLA-A30:01	RSPETCLGVK	0.9737	0.9118	1.3273	353.7	1.5426	2.29	1/888	1/7086
INDEL	Breast	CDK2_V123Sfs*21	HLA-B08:01	TLNLRICLL	0.9941	0.5236	0.2009	41.8	0.0697	15.67	1/888	1/7086
INDEL	Breast	MRPL2_D108Vfs*8	HLA-C07:02	YRMIVLSAF	0.9413	0.9174	0.1465	66	0.0326	16.08	1/888	1/7086
INDEL	Breast	MRPL2_D108Vfs*8	HLA-A02:01	MIVLSAFPA	0.9115	0.544	1.6663	103.2	1.0788	16.08	1/888	1/7086
INDEL	Breast	MRPL2_D108Vfs*8	HLA-A02:01	RMIVLSAFPA	0.957	0.5928	1.9129	130.4	1.2558	16.08	1/888	1/7086
INDEL	Breast	SNX12_R119Sfs*53	HLA-A02:01	SLLTKLLGT	0.9337	0.6804	0.5982	164.5	1.461	84.48	1/888	1/7086
INDEL	Breast	SNX12_R119Sfs*53	HLA-A03:01	KLLGTHWLR	0.9869	0.5822	0.2727	169.2	0.5675	84.48	1/888	1/7086
INDEL	Breast	GATA3_I361Afs*44	HLA-C03:04	RTSPRTARL	0.9897	0.9866	1.1225	397.2	0.8561	741.08	1/888	1/7086
INDEL	Breast	PHKA1_I1154Nfs*7	HLA-B15:01	IAVEKNSAY	0.999	0.8731	0.0888	70.4	0.3782	15.2	1/888	1/7086
INDEL	Breast	PHKA1_I1154Nfs*7	HLA-C03:04	IAVEKNSAY	0.9403	0.9844	0.1807	334.4	0.7701	15.2	1/888	1/7086
INDEL	Breast	PHKA1_I1154Nfs*7	HLA-B15:01	IIAVEKNSAY	0.9998	0.8159	0.5312	102.1	0.535	15.2	1/888	1/7086
INDEL	Breast	PHKA1_I1154Nfs*7	HLA-B15:01	SIIAVEKNSAY	0.9999	0.8137	0.2856	200.8	0.916	15.2	1/888	1/7086
INDEL	Breast	ZNF341_F484Tfs*14	HLA-B58:02	KSCAQTTHFW	0.9998	0.8062	0.0267	199.2	0.0096	5.1	1/888	1/7086
INDEL	Breast	SLC18B1_S39Ifs*25	HLA-B44:03	REQVFVLII	0.9417	0.9177	0.2253	175.2	0.1932	9.85	1/888	1/7086
INDEL	Breast	SLC18B1_S39Ifs*25	HLA-B44:03	GELRFHDVLF	0.9956	0.9361	0.0904	144.5	0.1674	9.85	1/888	1/7086
INDEL	Breast	SLC18B1_S39Ifs*25	HLA-B44:03	GELRFHDVLFY	0.9991	0.9381	0.0979	338.8	0.3312	9.85	1/888	1/7086
INDEL	Breast	MTSS1L_G289_A296del	HLA-B35:01	SSAKGGQTY	0.8755	0.7411	0.4916	320.9	0.667	111.57	1/888	1/7086
INDEL	Breast	DPH7_L80Sfs*46	HLA-B35:01	HPGGWTCPL	0.9742	0.9081	0.834	70.5	0.2473	21.4	1/888	1/7086
INDEL	Breast	DPH7_L80Sfs*46	HLA-A68:02	HTTAPPGGI	0.9068	0.5541	1.1249	76.2	0.5951	21.4	1/888	1/7086
INDEL	Breast	DPH7_L80Sfs*46	HLA-A30:01	SIHPSGRGPK	0.9853	0.8807	0.9226	139.5	0.685	21.4	1/888	1/7086
INDEL	Breast	DPH7_L80Sfs*46	HLA-B53:01	CPLGLGRCQW	0.9624	0.6999	0.7438	66	0.0875	21.4	1/888	1/7086
INDEL	Breast	SNTA1_S256_A261del	HLA-A30:01	RAKDEATAI	0.9772	0.8853	1.1117	464.2	1.931	35.95	1/888	1/7086
INDEL	Breast	SNTA1_S256_A261del	HLA-A68:02	EATAIQAQV	0.9984	0.7379	0.0861	9.9	0.0602	35.95	1/888	1/7086
INDEL	Breast	TENM4_P1709Lfs*7	HLA-C03:04	LTNVTFLSL	0.9987	0.9828	0.4599	51.1	0.2153	1.32	1/888	1/7086
INDEL	Breast	TENM4_P1709Lfs*7	HLA-C16:01	LTNVTFLSL	0.9505	0.9604	0.4048	40.6	0.1227	1.32	1/888	1/7086
INDEL	Breast	TENM4_P1709Lfs*7	HLA-A02:01	RLTNVTFLSL	0.9863	0.5316	0.6429	47.8	0.6057	1.32	1/888	1/7086
INDEL	Breast	TENM4_F1708Sfs*22	HLA-C03:04	VTSQVQAIL	0.9983	0.9689	0.5296	277.5	0.6901	1.32	1/888	1/7086
INDEL	Breast	TENM4_F1708Sfs*22	HLA-C16:01	VTSQVQAIL	0.8648	0.9766	0.3925	226.8	0.7411	1.32	1/888	1/7086
INDEL	Breast	MGAT4B_D83Efs*99	HLA-B35:01	TPARAAPAH	0.8002	0.7997	1.2561	306.6	0.6501	61.84	1/888	1/7086
INDEL	Breast	MGAT4B_D83Efs*99	HLA-B35:01	LPSPATPAG	0.8099	0.6707	1.0116	187.1	0.4723	61.84	1/888	1/7086
INDEL	Breast	NEU1_D297Ifs*3	HLA-B27:05	CRIVLRSYI	0.9992	0.6877	1.1532	100.7	0.336	54.67	1/888	1/7086
INDEL	Breast	TBX3_M184Gfs*25	HLA-C03:03	CTFTRTAPL	0.9868	0.9587	0.7014	52.1	0.2191	184.56	1/888	1/7086
INDEL	Breast	CPT2_T366Sfs*55	HLA-C03:03	IIAKDGSSL	0.9959	0.984	0.1656	73	0.2909	19.68	1/888	1/7086
INDEL	Breast	CPT2_T366Sfs*55	HLA-C03:03	STLSTLGVM	0.9925	0.9881	1.2592	100.5	0.3644	19.68	1/888	1/7086
INDEL	Breast	CPT2_T366Sfs*55	HLA-B15:01	VMVWQCSDF	0.9871	0.9019	0.9711	66.1	0.3554	19.68	1/888	1/7086
INDEL	Breast	CPT2_T366Sfs*55	HLA-B15:01	LMKYLKTAL	0.9686	0.8059	1.1888	71.7	0.385	19.68	1/888	1/7086
INDEL	Breast	CPT2_T366Sfs*55	HLA-B15:01	YLKTALRPL	0.9777	0.7885	1.4289	110.9	0.5725	19.68	1/888	1/7086
INDEL	Breast	CPT2_T366Sfs*55	HLA-C03:03	YLKTALRPL	0.7727	0.9527	1.2725	381.6	0.8343	19.68	1/888	1/7086
INDEL	Breast	CPT2_T366Sfs*55	HLA-C03:03	TALRPLPSL	0.9997	0.9853	0.0848	35.2	0.1607	19.68	1/888	1/7086
INDEL	Breast	CPT2_T366Sfs*55	HLA-C03:03	RASQLPLTL	0.9995	0.9945	0.033	14.4	0.0571	19.68	1/888	1/7086
INDEL	Breast	CPT2_T366Sfs*55	HLA-B15:01	WQCSDFLMKY	0.9989	0.8822	0.8271	70.9	0.3811	19.68	1/888	1/7086
INDEL	Breast	HERC1_P4806Lfs*10	HLA-C05:01	KVDRPYDSLL	0.9998	0.9049	0.4475	390.2	0.1587	8.76	1/888	1/7086
INDEL	Breast	TRO_F769Sfs*13	HLA-B35:01	SAIQPALAL	0.9891	0.8715	0.0121	196	0.4857	1.22	1/888	1/7086
INDEL	Breast	TRO_F769Sfs*13	HLA-B07:02	SAIQPALAL	0.918	0.5855	0.0187	282.9	0.5953	1.22	1/888	1/7086
INDEL	Breast	TRO_F769Sfs*13	HLA-A02:01	AIQPALALV	0.977	0.6813	0.1255	52.8	0.6593	1.22	1/888	1/7086
INDEL	Breast	TRO_F769Sfs*13	HLA-B35:01	QPALALVVH	0.8329	0.8264	0.4967	437.9	0.8099	1.22	1/888	1/7086
INDEL	Breast	WDR13_H108Tfs*16	HLA-C03:04	RALGARGTV	0.6652	0.9865	1.3306	241.2	0.6343	7.2	1/888	1/7086
INDEL	Breast	WDR13_H108Tfs*16	HLA-C03:04	LGARGTVVL	0.9966	0.9876	0.8208	96.9	0.3558	7.2	1/888	1/7086
INDEL	Breast	MRFAP1_H81Tfs*41	HLA-B27:05	RRRPRRLRR	0.9905	0.539	0.8749	253.7	0.7528	363.47	1/888	1/7086
INDEL	Breast	MRFAP1_H81Tfs*41	HLA-B27:05	RRLRRWQRC	0.9981	0.8582	1.5116	130.9	0.433	363.47	1/888	1/7086
INDEL	Breast	MRFAP1_H81Tfs*41	HLA-A24:02	RWQRCWWSW	0.9587	0.8006	0.6117	24.5	0.0503	363.47	1/888	1/7086
INDEL	Breast	MRFAP1_H81Tfs*41	HLA-B27:05	RRLRRWQRCW	0.9991	0.6962	1.4776	124	0.4103	363.47	1/888	1/7086
INDEL	Breast	MRFAP1_H81Tfs*41	HLA-B27:05	RRWQRCWWSW	0.9996	0.573	0.2942	16	0.0184	363.47	1/888	1/7086
INDEL	Breast	SYNGAP1_E238Nfs*10	HLA-B27:05	CRSAANGLR	0.9731	0.8502	1.6023	352.7	0.9633	9.34	1/888	1/7086
INDEL	Breast	SYNGAP1_E238Nfs*10	HLA-C03:04	RSAANGLRI	0.9604	0.9915	1.9129	421.8	0.8886	9.34	1/888	1/7086
INDEL	Breast	NFKB2_Y294Ifs*4	HLA-C03:04	YAIVFRTPPI	0.996	0.9616	1.6127	53.3	0.2234	28.78	1/888	2/7086
INDEL	Breast	TRAF7_M633Dfs*30	HLA-B27:05	HRAGCVPGPTL	0.9999	0.7124	0.7081	353.1	0.9641	79.33	1/888	1/7086
INDEL	Breast	MAP3K1_T457Yfs*4	HLA-A02:01	MLDEESLYSV	0.9991	0.6838	0.0979	5.9	0.0481	3.04	1/888	1/7086
INDEL	Breast	MAP3K1_T457Yfs*4	HLA-C05:01	MLDEESLYSV	0.9999	0.9437	0.1947	227.8	0.1027	3.04	1/888	1/7086
INDEL	Breast	NUP205_K859Rfs*9	HLA-C15:02	LTLQRKIFL	0.9951	0.8821	0.3398	382.5	0.4129	44.93	1/888	1/7086
INDEL	Breast	PPP2R1A_G43Efs*100	HLA-C15:02	RAGPAGLGL	0.9961	0.9458	0.0794	138	0.1432	33.44	1/888	1/7086
INDEL	Breast	PPP2R1A_G43Efs*100	HLA-C03:04	RAGPAGLGL	0.9754	0.9912	0.0835	98	0.3585	33.44	1/888	1/7086
INDEL	Breast	PPP2R1A_G43Efs*100	HLA-C15:02	VSFCLSLQI	0.9992	0.7383	0.5779	110.5	0.1085	33.44	1/888	1/7086
INDEL	Breast	PPP2R1A_G43Efs*100	HLA-C03:04	VSFCLSLQI	0.9796	0.9811	1.8016	271.3	0.6811	33.44	1/888	1/7086
INDEL	Breast	PPP2R1A_G43Efs*100	HLA-C15:02	LSLQIPSMM	0.9854	0.8532	0.9405	149.5	0.1587	33.44	1/888	1/7086
INDEL	Breast	PPP2R1A_G43Efs*100	HLA-C03:04	LSLQIPSMM	0.9982	0.9946	1.0314	64.7	0.2631	33.44	1/888	1/7086
INDEL	Breast	PPP2R1A_G43Efs*100	HLA-C03:04	LQIPSMMKM	0.9691	0.9937	1.4289	112.2	0.3895	33.44	1/888	1/7086
INDEL	Breast	PPP2R1A_G43Efs*100	HLA-A23:01	RWPQWRRQW	0.9002	0.5948	0.7081	490	1.0233	33.44	1/888	1/7086
INDEL	Breast	PPP2R1A_G43Efs*100	HLA-B08:01	RPLTWRRTL	0.9634	0.586	0.1418	362.1	0.5826	33.44	1/888	1/7086
INDEL	Breast	PPP2R1A_G43Efs*100	HLA-A11:01	RAGPAGLGLK	0.9975	0.6728	0.3199	194.2	0.9825	33.44	1/888	1/7086
INDEL	Breast	TANC1_G702Pfs*18	HLA-A02:01	HLVLRSLPV	0.9697	0.7329	0.7106	136.1	1.2899	3.18	1/888	1/7086
INDEL	Breast	TANC1_G702Pfs*18	HLA-B35:08	VPQAHPGPF	0.9702	0.5883	0.3914	183.1	0.1332	3.18	1/888	1/7086
INDEL	Breast	RFX3_V46Cfs*50	HLA-A02:01	YQWSNPNNNV	0.988	0.755	1.0837	135.7	1.2878	2.07	1/888	1/7086
INDEL	Breast	WDR59_E610Pfs*62	HLA-A02:01	ILLASCLFT	0.9235	0.6007	1.3915	124.7	1.2199	1.93	1/888	1/7086
INDEL	Breast	TP53_P77Gfs*65	HLA-B35:08	FPSGLLAF	0.9931	0.8646	0.3461	73.5	0.0546	8.46	1/888	1/7086
INDEL	Breast	TP53_P77Gfs*65	HLA-A02:01	CTSPLLAPV	0.9635	0.5821	0.834	51	0.6403	8.46	1/888	1/7086
INDEL	Breast	TP53_P77Gfs*65	HLA-B35:08	SPLLAPVIF	0.9772	0.6785	0.1336	302.9	0.1938	8.46	1/888	1/7086
INDEL	Breast	TP53_P77Gfs*65	HLA-B35:08	FPSGLLAFW	0.9849	0.9076	0.2054	92.2	0.0667	8.46	1/888	1/7086
INDEL	Breast	TP53_P77Gfs*65	HLA-C06:02	LRFPSGLLAF	0.9737	0.9976	0.1302	179.8	0.0661	8.46	1/888	1/7086
INDEL	Breast	TEAD1_T163Qfs*111	HLA-B08:01	LPGKVAPL	0.9969	0.5487	1.7731	189.9	0.3369	3.65	1/888	1/7086
INDEL	Breast	TEAD1_T163Qfs*111	HLA-C07:01	HRPQLPQSL	0.9977	0.7438	0.0523	191.6	0.073	3.65	1/888	1/7086
INDEL	Breast	TCF12_G48Dfs*39	HLA-B08:01	LPMIHLEV	0.9958	0.8374	0.3529	172.3	0.3037	9.81	1/888	1/7086
INDEL	Breast	TCF12_G48Dfs*39	HLA-B08:01	LPMIHLEVL	0.9867	0.8717	0.0356	49.4	0.0851	9.81	1/888	1/7086
INDEL	Breast	KDM5C_L1076Pfs*56	HLA-B08:01	LPQEKFLL	0.9926	0.7895	0.3199	106.6	0.1897	5.91	1/888	1/7086
INDEL	Breast	KDM5C_L1076Pfs*56	HLA-B08:01	LPMCRCRL	0.9943	0.5648	1.0016	19.8	0.0332	5.91	1/888	1/7086
INDEL	Breast	EIF2S3_L146_G148delinsR	HLA-A02:01	LMATMRAAV	0.978	0.6099	0.3837	75.7	0.8738	107	1/888	1/7086
INDEL	Breast	EIF2S3_L146_G148delinsR	HLA-B35:03	MATMRAAVM	0.9785	0.951	0.6949	486.6	0.0837	107	1/888	1/7086
INDEL	Breast	EIF2S3_L146_G148delinsR	HLA-A02:01	ILMATMRAAV	0.9944	0.7213	0.6949	11.3	0.1341	107	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B57:03	MTEDAAPW	0.9622	0.997	1.0678	422.9	0.7017	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-C16:01	RSRWWTSL	0.9234	0.9908	1.0474	433.4	1.2456	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B57:03	RAATEVTW	0.9987	0.9946	0.2557	70.2	0.1491	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B57:03	AATEVTWW	0.9974	0.9969	0.8884	423.1	0.7021	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-C07:01	ARTSRAPAV	0.9588	0.5995	0.6635	484.3	0.1653	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-C16:01	KAATRVSSA	0.9207	0.9526	0.9336	469.1	1.3188	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-C16:01	ATRVSSASM	0.6258	0.961	0.7058	175.8	0.5897	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-C16:01	SASMTTSSV	0.8499	0.9801	0.6758	61.8	0.2107	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B15:16	MTTSSVPAL	0.9541	0.896	0.5904	103.6	0.3632	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-C16:01	MTTSSVPAL	0.9191	0.9684	0.2499	28.3	0.074	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-C16:01	QAVTVPSAM	0.7534	0.9692	0.4295	146.1	0.4988	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-C16:01	SAMPPASTA	0.972	0.985	0.3577	100	0.3481	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-C16:01	AMPPASTAM	0.9734	0.9902	0.2557	148.1	0.5054	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-C16:01	ASTAMGASV	0.5316	0.9837	1.0341	479.5	1.3379	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-C16:01	STAMGASVM	0.8062	0.9776	0.5454	70.6	0.2452	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-C16:01	ASVMDVATV	0.7164	0.9861	1.314	420.3	1.2164	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-C16:01	VMDVATVSV	0.8441	0.9836	0.2882	330.9	1.0124	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B15:16	STRASARTY	0.9294	0.5906	1.5343	279.5	1.0003	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-C16:01	RTYAPACSA	0.8206	0.9892	1.5935	197.5	0.655	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-C07:01	SRSRWWTSL	0.9981	0.7613	0.0583	123.7	0.0489	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B57:03	TSLREPRRW	0.9838	0.9656	0.1112	85.7	0.1834	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-C16:01	CAAPSGTRM	0.599	0.9729	0.4789	142.3	0.4868	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B57:03	TTAPTATPW	0.8994	0.9963	0.1132	12	0.0099	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B15:16	TTAPTATPW	0.9903	0.991	0.1793	51	0.1472	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-C16:01	TAPLGPTAL	0.9164	0.9915	0.0201	205.8	0.6787	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B57:03	CSSSSCRSW	0.9735	0.9927	0.5657	59.1	0.1263	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B15:16	CSSSSCRSW	0.8691	0.8233	0.793	88.8	0.2954	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B15:16	RSWPCYCCY	0.9398	0.6635	0.5706	77.8	0.2555	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B57:03	TVPAARPAW	0.7225	0.9674	0.2382	286.6	0.5221	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B57:03	RAATEVTWW	0.9925	0.9958	0.1098	15.1	0.0176	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B15:16	RAATEVTWW	0.992	0.985	0.23	168.7	0.616	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B15:16	QTCNCSTGTF	0.9514	0.5775	1.5029	285.1	1.0224	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-C16:01	VPALPGSSAM	0.8808	0.9653	1.9202	395.3	1.155	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B57:03	SAMTEDAAPW	0.9376	0.9946	0.6058	41.2	0.0853	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B15:16	SAMTEDAAPW	0.956	0.9132	1.4441	487.1	1.6522	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-C16:01	SAMPPASTAM	0.9928	0.9852	0.3514	50.3	0.1593	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-A03:01	RTYAPACSAR	0.9966	0.5134	0.2446	25.9	0.0755	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-A03:01	RVRNATSRSR	0.9012	0.5833	1.5578	397.8	1.0363	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B57:03	WTSLREPRRW	0.9623	0.9776	0.7456	359.9	0.6162	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B57:03	TSLREPRRWW	0.984	0.9914	0.3302	345.8	0.5964	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B57:03	MTTAPTATPW	0.9224	0.9972	0.3736	10.9	0.0095	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B15:16	MTTAPTATPW	0.9742	0.9764	0.6392	18.3	0.0207	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B15:16	VTAPLGPTAL	0.9867	0.9485	0.7967	263.1	0.9458	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-C16:01	VTAPLGPTAL	0.9906	0.9905	0.1821	350.6	1.0532	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B57:03	STVPAARPAW	0.9901	0.987	0.1242	22.5	0.035	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B15:16	STVPAARPAW	0.9837	0.936	0.2604	113.5	0.4055	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B57:03	FSRAATEVTW	0.9974	0.9842	0.057	18.9	0.026	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B15:16	FSRAATEVTW	0.9928	0.9244	0.1596	23.9	0.0398	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B57:03	SSAMTEDAAPW	0.9944	0.9931	0.6408	106.6	0.2297	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B15:16	SSAMTEDAAPW	0.9703	0.9012	1.9129	435.3	1.5029	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-A03:01	RTYAPACSARR	0.9975	0.5585	0.4902	131.8	0.462	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B57:03	RMTTAPTATPW	0.9862	0.9962	0.704	29.8	0.0545	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B15:16	RMTTAPTATPW	0.9854	0.9603	1.8843	84.1	0.2789	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B57:03	TAPLGPTALSW	0.9989	0.9904	0.0794	281.8	0.5155	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B57:03	GSTVPAARPAW	0.9989	0.9787	0.3974	276.6	0.5082	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B57:03	HFSRAATEVTW	0.9964	0.9909	0.897	384.8	0.6516	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B57:03	FSRAATEVTWW	0.9993	0.992	0.3941	161.5	0.3373	147.53	1/888	1/7086
INDEL	Breast	ITGB4_S496Tfs*270	HLA-B15:16	FSRAATEVTWW	0.9992	0.9576	1.0474	111	0.395	147.53	1/888	1/7086
INDEL	Breast	FUNDC2_T110Rfs*44	HLA-C16:01	FSFSLQTI	0.9917	0.9636	0.4769	471	1.3224	13.44	1/888	1/7086
INDEL	Breast	FUNDC2_T110Rfs*44	HLA-C07:01	ARKSFSCLV	0.7546	0.773	0.7833	361.8	0.1288	13.44	1/888	1/7086
INDEL	Breast	FUNDC2_T110Rfs*44	HLA-B57:03	KSFSCLVSL	0.9946	0.9308	0.3217	42.8	0.0891	13.44	1/888	1/7086
INDEL	Breast	FUNDC2_T110Rfs*44	HLA-B15:16	KSFSCLVSL	0.9972	0.5777	0.4018	32.2	0.0701	13.44	1/888	1/7086
INDEL	Breast	FUNDC2_T110Rfs*44	HLA-C16:01	KSFSCLVSL	0.9916	0.9784	0.3514	20.6	0.0459	13.44	1/888	1/7086
INDEL	Breast	FUNDC2_T110Rfs*44	HLA-B57:03	VSLSKHHQL	0.9938	0.9525	0.4183	388.1	0.6563	13.44	1/888	1/7086
INDEL	Breast	FUNDC2_T110Rfs*44	HLA-C16:01	VSLSKHHQL	0.9012	0.9416	0.3657	104.3	0.3613	13.44	1/888	1/7086
INDEL	Breast	FUNDC2_T110Rfs*44	HLA-B57:03	SLSKHHQLW	0.922	0.9913	0.0995	294.6	0.5331	13.44	1/888	1/7086
INDEL	Breast	FUNDC2_T110Rfs*44	HLA-C16:01	FFSFSLQTI	0.7223	0.959	1.4566	452.5	1.2864	13.44	1/888	1/7086
INDEL	Breast	FUNDC2_T110Rfs*44	HLA-B57:03	FSFSLQTIL	0.8856	0.8819	0.6273	348.4	0.5993	13.44	1/888	1/7086
INDEL	Breast	FUNDC2_T110Rfs*44	HLA-B15:16	FSFSLQTIL	0.9668	0.5169	0.9405	35.1	0.0789	13.44	1/888	1/7086
INDEL	Breast	FUNDC2_T110Rfs*44	HLA-C16:01	FSFSLQTIL	0.9362	0.9668	0.4382	21.4	0.0486	13.44	1/888	1/7086
INDEL	Breast	FUNDC2_T110Rfs*44	HLA-C16:01	QTILGTSKL	0.7629	0.9889	0.4845	461.4	1.3045	13.44	1/888	1/7086
INDEL	Breast	FUNDC2_T110Rfs*44	HLA-B57:03	TSKLTGNEW	0.9872	0.9979	0.0618	106.9	0.2304	13.44	1/888	1/7086
INDEL	Breast	FUNDC2_T110Rfs*44	HLA-B15:16	TSKLTGNEW	0.9901	0.9793	0.184	456.3	1.5699	13.44	1/888	1/7086
INDEL	Breast	FUNDC2_T110Rfs*44	HLA-B57:03	VSLSKHHQLW	0.9975	0.9907	0.1704	22.6	0.0353	13.44	1/888	1/7086
INDEL	Breast	FUNDC2_T110Rfs*44	HLA-B15:16	VSLSKHHQLW	0.9975	0.9628	0.4426	93.4	0.3161	13.44	1/888	1/7086
INDEL	Breast	FUNDC2_T110Rfs*44	HLA-B57:03	GTSKLTGNEW	0.976	0.9966	0.0214	221.4	0.4274	13.44	1/888	1/7086
INDEL	Breast	FUNDC2_T110Rfs*44	HLA-B57:03	LVSLSKHHQLW	0.9905	0.9956	0.4845	425.7	0.7055	13.44	1/888	1/7086
INDEL	Breast	PCBP2_Q161Hfs*61	HLA-B27:05	CRWSGQVQH	0.9988	0.5562	0.5471	94.9	0.3157	83.86	1/888	1/7086
INDEL	Breast	PCBP2_Q161Hfs*61	HLA-B27:05	CRWSGQVQHR	0.9997	0.5509	0.7356	70.9	0.2357	83.86	1/888	1/7086
INDEL	Breast	MKS1_T34_S35insVAGSAP	HLA-A32:01	RVHLQRITV	0.9374	0.9405	0.2287	179.4	0.3192	17.46	1/888	1/7086
INDEL	Breast	MKS1_T34_S35insVAGSAP	HLA-B27:05	LRVHLQRITV	0.9996	0.737	1.5485	327.4	0.908	17.46	1/888	1/7086
INDEL	Breast	RUNX1_S268Gfs*311	HLA-B27:05	RRLHLLPDA	0.9989	0.684	0.6891	59.4	0.1951	74.67	1/888	1/7086
INDEL	Breast	RUNX1_S268Gfs*311	HLA-B13:02	SQLALLPPV	0.9358	0.9819	0.4475	108.8	0.0087	74.67	1/888	1/7086
INDEL	Breast	RUNX1_S268Gfs*311	HLA-B27:05	RRLGRLLPV	0.9998	0.673	0.6273	7.8	0.0084	74.67	1/888	1/7086
INDEL	Breast	RUNX1_S268Gfs*311	HLA-A32:01	RLGRLLPVL	0.9825	0.9928	0.7833	114	0.1945	74.67	1/888	1/7086
INDEL	Breast	RUNX1_S268Gfs*311	HLA-C02:02	LAAAHPAAL	0.9915	0.9885	0.1498	107.8	0.0446	74.67	1/888	1/7086
INDEL	Breast	RUNX1_S268Gfs*311	HLA-A24:02	SFCAPSNAHF	0.9952	0.526	0.4563	314	0.4963	74.67	1/888	1/7086
INDEL	Breast	RUNX1_S268Gfs*311	HLA-B27:05	RRLHLLPDAG	0.9964	0.645	1.3306	155.6	0.5058	74.67	1/888	1/7086
INDEL	Breast	RUNX1_S268Gfs*311	HLA-B27:05	HRHRHVGHGL	0.9987	0.7023	0.786	62.2	0.2048	74.67	1/888	1/7086
INDEL	Breast	RUNX1_S268Gfs*311	HLA-B27:05	RRLGRLLPVL	1	0.9218	0.4232	7.1	0.008	74.67	1/888	1/7086
INDEL	Breast	RUNX1_S268Gfs*311	HLA-B27:05	RRALAAAHPA	0.9997	0.5986	1.9476	166.9	0.5361	74.67	1/888	1/7086
INDEL	Breast	RUNX1_S268Gfs*311	HLA-B27:05	RRLHLLPDAGH	0.9999	0.5112	0.5419	118.2	0.3918	74.67	1/888	1/7086
INDEL	Breast	RUNX1_S268Gfs*311	HLA-B27:05	RRLGRLLPVLH	1	0.851	0.3577	51.7	0.1638	74.67	1/888	1/7086
INDEL	Breast	RUNX1_S268Gfs*311	HLA-B27:05	GRLLPVLHGGR	1	0.6513	0.5619	211.2	0.6502	74.67	1/888	1/7086
INDEL	Breast	TP53_L93Vfs*55	HLA-B42:02	APAPSWPVI	0.6207	0.6855	0.0995	295.2	0.1795	21.61	1/888	1/7086
INDEL	Breast	TP53_L93Vfs*55	HLA-C06:02	LRFPSGLLAF	0.9737	0.9976	0.1302	179.8	0.0661	21.61	1/888	1/7086
INDEL	Breast	DNMT3A_A380Rfs*27	HLA-B27:05	MRVTLPRPW	0.9899	0.6622	0.9432	280.1	0.808	7.17	1/888	1/7086
INDEL	Breast	DNMT3A_A380Rfs*27	HLA-B07:02	RPWRCRTSP	0.9931	0.513	0.8378	149	0.388	7.17	1/888	1/7086
INDEL	Breast	DNMT3A_A380Rfs*27	HLA-B27:05	MRVTLPRPWR	0.9997	0.5273	0.793	83.3	0.2771	7.17	1/888	1/7086
INDEL	Breast	DNMT3A_R379Pfs*28	HLA-B07:02	SPRGSCSRC	0.9934	0.5098	1.3596	276	0.5859	7.17	1/888	1/7086
INDEL	Breast	DNMT3A_R379Pfs*28	HLA-B27:05	MRVTLPRPW	0.9899	0.6622	0.9432	280.1	0.808	7.17	1/888	1/7086
INDEL	Breast	DNMT3A_R379Pfs*28	HLA-B07:02	RPWRCRTSP	0.9931	0.513	0.8378	149	0.388	7.17	1/888	1/7086
INDEL	Breast	DNMT3A_R379Pfs*28	HLA-B27:05	MRVTLPRPWR	0.9997	0.5273	0.793	83.3	0.2771	7.17	1/888	1/7086
INDEL	Breast	RB1_S866Afs*7	HLA-B27:05	KRSAEGATL	0.9977	0.8572	0.68	330.2	0.9143	25.32	1/888	1/7086
INDEL	Breast	RB1_S866Afs*7	HLA-C02:02	RSAEGATLL	0.7423	0.9872	0.4529	115.8	0.0507	25.32	1/888	1/7086
INDEL	Breast	RB1_S866Afs*7	HLA-B27:05	KRSAEGATLL	0.9996	0.7265	0.6556	154.5	0.5027	25.32	1/888	1/7086
INDEL	Breast	MYH9_K82Gfs*54	HLA-B07:02	LTRTCPSTL	0.9565	0.568	1.1173	280.6	0.5923	509.56	1/888	1/7086
INDEL	Breast	MYH9_K82Gfs*54	HLA-B15:01	GTRCPLTSM	0.9968	0.8593	1.5252	436.1	1.5605	509.56	1/888	1/7086
INDEL	Breast	MYH9_K82Gfs*54	HLA-B07:02	GTRCPLTSM	0.984	0.5592	1.1589	331.5	0.6574	509.56	1/888	1/7086
INDEL	Breast	MYH9_K82Gfs*54	HLA-B07:02	RARRGTRCPL	0.9955	0.7907	1.2269	23.9	0.0858	509.56	1/888	1/7086
INDEL	Breast	PLCL2_Y554Ifs*8	HLA-B18:01	EESIYHPQM	0.9886	0.6055	0.463	112	0.0783	6.09	1/888	1/7086
INDEL	Breast	RNF115_G57Dfs*23	HLA-B57:03	GSHDVFSRF	0.9911	0.9527	0.0979	432.1	0.7138	15.29	1/888	1/7086
INDEL	Breast	RNF115_G57Dfs*23	HLA-B57:03	SSFLDHNNTF	0.9988	0.9623	0.2367	157.7	0.3311	15.29	1/888	1/7086
INDEL	Breast	R3HDM1_A128Pfs*24	HLA-B44:03	QEIPVKNTL	0.996	0.974	0.037	494.8	0.4336	20.5	1/888	1/7086
INDEL	Breast	R3HDM1_A128Pfs*24	HLA-B44:03	QEIPVKNTLI	0.9838	0.9647	0.4698	455.2	0.4063	20.5	1/888	1/7086
INDEL	Breast	BOP1_G455Afs*3	HLA-B57:03	RTVPVGAW	0.9972	0.9962	0.3009	47.4	0.0982	56.76	1/888	1/7086
INDEL	Breast	SHARPIN_Q193Sfs*25	HLA-A02:01	LLPTWPHQA	0.9648	0.6109	0.0601	119.3	1.1849	68.85	2/888	2/7086
INDEL	Breast	SHARPIN_Q193Sfs*25	HLA-A02:01	LLPTWPHQA	0.9648	0.6109	0.0601	119.3	1.1849	68.85	2/888	2/7086
INDEL	Breast	SHARPIN_Q193Sfs*25	HLA-B53:01	SASGGLLPTW	0.9705	0.949	0.2778	323.9	0.3448	68.85	2/888	2/7086
INDEL	Breast	SHARPIN_Q193Sfs*25	HLA-B53:01	SASGGLLPTW	0.9705	0.949	0.2778	323.9	0.3448	68.85	2/888	2/7086
INDEL	Breast	SHARPIN_Q193Sfs*25	HLA-A02:01	GLLPTWPHQA	0.9683	0.6225	0.3806	187.9	1.582	68.85	2/888	2/7086
INDEL	Breast	SHARPIN_Q193Sfs*25	HLA-A02:01	GLLPTWPHQA	0.9683	0.6225	0.3806	187.9	1.582	68.85	2/888	2/7086
INDEL	Breast	TP53_T304Ifs*41	HLA-C07:01	RRNHWMENI	0.9962	0.5777	0.0762	288.1	0.1045	16.12	1/888	1/7086
INDEL	Breast	TP53_T304Ifs*41	HLA-B15:03	HWMENISPF	0.7419	0.8336	1.1589	95.8	1.3819	16.12	1/888	1/7086
INDEL	Breast	TP53_T304Ifs*41	HLA-A68:02	ENISPFRSV	0.9581	0.5669	0.9455	159.1	0.9693	16.12	1/888	1/7086
INDEL	Breast	TP53_T304Ifs*41	HLA-A33:03	TTPAPLPSQR	0.8881	0.7288	0.3398	342.7	0.9605	16.12	1/888	1/7086
INDEL	Breast	TP53_T304Ifs*41	HLA-A68:02	NISPFRSVGV	0.9909	0.5838	0.7247	30.7	0.2716	16.12	1/888	1/7086
INDEL	Breast	KDR_Q1169Sfs*41	HLA-A68:01	DIRDFEHGR	0.9792	0.5748	0.0131	95.3	0.8778	22.46	1/888	1/7086
INDEL	Breast	KDR_Q1169Sfs*41	HLA-B35:01	SAYLTCFLY	0.9875	0.7828	0.3717	77.9	0.2669	22.46	1/888	1/7086
INDEL	Breast	KDR_Q1169Sfs*41	HLA-B35:01	FLYGGGGSM	0.9115	0.8682	0.8108	223.9	0.5319	22.46	1/888	1/7086
INDEL	Breast	KDR_Q1169Sfs*41	HLA-A68:01	QANASAGWQR	0.9888	0.6808	0.5165	45.7	0.5096	22.46	1/888	1/7086
INDEL	Breast	TBX3_E327Dfs*33	HLA-B58:01	LSTASPRLL	0.9788	0.8336	0.2428	270.7	0.9696	147.91	1/888	1/7086
INDEL	Breast	TBX3_E327Dfs*33	HLA-A02:01	RLLLQPPPL	0.9617	0.7536	0.3152	44.3	0.5686	147.91	1/888	1/7086
INDEL	Breast	CDH1_L731Ffs*39	HLA-B58:01	LLFFGGERW	0.9829	0.9892	0.1149	40.5	0.2462	118.15	1/888	1/7086
INDEL	Breast	CDH1_L731Ffs*39	HLA-C07:01	QRMTPGTTF	0.9984	0.7806	0.0995	289.7	0.105	118.15	2/888	2/7086
INDEL	Breast	CDH1_L731Ffs*39	HLA-C07:01	QRMTPGTTF	0.9984	0.7806	0.0995	289.7	0.105	118.15	2/888	2/7086
INDEL	Breast	CDH1_L731Ffs*39	HLA-B58:01	LLLFFGGERW	0.9874	0.9754	1.3951	216.2	0.823	118.15	1/888	1/7086
INDEL	Breast	MUC16_P1058Hfs*8	HLA-B58:01	RLDTSHLHW	0.9959	0.9798	0.0142	77.6	0.3976	1.88	1/888	1/7086
INDEL	Breast	KLHL12_D89Tfs*10	HLA-B58:01	STMEILLTL	0.9709	0.7084	0.0995	70.5	0.3718	21.38	1/888	1/7086
INDEL	Breast	KLHL12_D89Tfs*10	HLA-C03:02	STMEILLTL	0.9965	0.949	0.1302	17.6	0.0714	21.38	1/888	1/7086
INDEL	Breast	MINK1_P929Sfs*8	HLA-B53:01	SPSLEGWEW	0.9509	0.825	0.1039	27.9	0.0337	69.59	1/888	1/7086
INDEL	Breast	MINK1_P929Sfs*8	HLA-B58:01	KGQSPSLEGW	0.9967	0.9802	0.4563	127.8	0.5657	69.59	1/888	1/7086
INDEL	Breast	MINK1_P929Sfs*8	HLA-B58:01	QSPSLEGWEW	0.9924	0.9928	0.3107	32.9	0.2103	69.59	1/888	1/7086
INDEL	Breast	MINK1_P929Sfs*8	HLA-B53:01	QSPSLEGWEW	0.8356	0.8738	0.8655	174.7	0.2023	69.59	1/888	1/7086
INDEL	Breast	RBP2_V93del	HLA-A02:01	VTWEGDLVCV	0.9188	0.6355	0.2239	249	1.8951	4.03	1/888	1/7086
INDEL	Breast	BRCA1_C903Wfs*97	HLA-B15:03	KEALGFVY	0.8726	0.8652	0.2896	156	1.9034	2.46	1/888	1/7086
INDEL	Breast	BRCA1_C903Wfs*97	HLA-A02:01	ALGFVYHL	0.9864	0.692	1.0266	180	1.5417	2.46	1/888	1/7086
INDEL	Breast	BRCA1_C903Wfs*97	HLA-B15:03	RMSLISSLY	0.8498	0.5227	0.033	4.5	0.036	2.46	1/888	1/7086
INDEL	Breast	BRCA1_C903Wfs*97	HLA-B15:03	RQLISLQAF	0.9032	0.6503	0.0441	2.4	0.008	2.46	1/888	1/7086
INDEL	Breast	BRCA1_C903Wfs*97	HLA-A02:01	SLQAFLWLV	0.9927	0.7447	0.0745	4.9	0.0308	2.46	1/888	1/7086
INDEL	Breast	BRCA1_C903Wfs*97	HLA-A02:01	WLVRKISQL	0.9097	0.5903	0.2573	85.2	0.951	2.46	1/888	1/7086
INDEL	Breast	BRCA1_C903Wfs*97	HLA-B35:01	MPNVVSKEA	0.9658	0.9056	0.0452	187.8	0.4735	2.46	1/888	1/7086
INDEL	Breast	BRCA1_C903Wfs*97	HLA-A02:01	FVYHLSSEA	0.9787	0.6242	0.5686	109.8	1.1223	2.46	1/888	1/7086
INDEL	Breast	BRCA1_C903Wfs*97	HLA-B15:03	KTHIVYHHF	0.9242	0.5908	0.2396	104.9	1.461	2.46	1/888	1/7086
INDEL	Breast	BRCA1_C903Wfs*97	HLA-B15:03	THIVYHHFF	0.5153	0.5644	1.2661	126.9	1.6526	2.46	1/888	1/7086
INDEL	Breast	BRCA1_C903Wfs*97	HLA-B15:03	YHHFFPSSH	0.528	0.8442	0.8607	164.7	1.976	2.46	1/888	1/7086
INDEL	Breast	BRCA1_C903Wfs*97	HLA-B15:03	HHFFPSSHL	0.8067	0.8844	0.2151	111.1	1.5147	2.46	1/888	1/7086
INDEL	Breast	BRCA1_C903Wfs*97	HLA-B35:01	FPSSHLLKL	0.9972	0.8232	0.0052	18.3	0.0754	2.46	1/888	1/7086
INDEL	Breast	BRCA1_C903Wfs*97	HLA-B15:03	KERMSLISSL	0.9211	0.5749	1.9828	75.2	1.1803	2.46	1/888	1/7086
INDEL	Breast	BRCA1_C903Wfs*97	HLA-B15:03	YRQLISLQAF	0.9713	0.5926	0.7247	5.6	0.0553	2.46	1/888	1/7086
INDEL	Breast	BRCA1_C903Wfs*97	HLA-B15:03	RQLISLQAFL	0.7318	0.6681	1.6226	13.7	0.233	2.46	1/888	1/7086
INDEL	Breast	BRCA1_C903Wfs*97	HLA-A02:01	ISLQAFLWLV	0.9433	0.7312	1.5795	33.8	0.4489	2.46	1/888	1/7086
INDEL	Breast	BRCA1_C903Wfs*97	HLA-A02:01	KISQLIMPNV	0.9866	0.7177	0.651	110.7	1.1279	2.46	1/888	1/7086
INDEL	Breast	BRCA1_C903Wfs*97	HLA-B35:01	MPNVVSKEAL	0.9919	0.8433	0.1025	39	0.1511	2.46	1/888	1/7086
INDEL	Breast	BRCA1_C903Wfs*97	HLA-B15:03	VSKEALGFVY	0.9911	0.7734	1.3243	121.6	1.6085	2.46	1/888	1/7086
INDEL	Breast	BRCA1_C903Wfs*97	HLA-B15:03	MDFYKTHIVY	0.9282	0.6166	1.5432	56.9	0.9623	2.46	1/888	1/7086
INDEL	Breast	BRCA1_C903Wfs*97	HLA-B15:03	KERMSLISSLY	0.8941	0.5672	1.0474	87.9	1.3133	2.46	1/888	1/7086
INDEL	Breast	PIAS3_L570_A574del	HLA-C16:01	GTPSHFPTL	0.8141	0.9884	0.0962	194.7	0.6466	48.79	1/888	1/7086
INDEL	Breast	SEC31A_G743del	HLA-C16:01	QAMDTSTVV	0.8272	0.9812	0.6674	72.1	0.2505	97.77	1/888	1/7086
INDEL	Breast	SEC31A_G743del	HLA-C03:02	QAMDTSTVV	0.956	0.976	0.8991	37.6	0.1792	97.77	1/888	1/7086
INDEL	Breast	SEC31A_G743del	HLA-A02:01	AMDTSTVVL	0.9698	0.6731	0.1039	157.3	1.4235	97.77	1/888	1/7086
INDEL	Breast	SEC31A_G743del	HLA-C16:01	AMDTSTVVL	0.9692	0.9791	0.1963	339.7	1.0311	97.77	1/888	1/7086
INDEL	Breast	SEC31A_G743del	HLA-C16:01	QAMDTSTVVL	0.9714	0.9819	0.5757	359	1.0698	97.77	1/888	1/7086
INDEL	Breast	SEC31A_G743del	HLA-C03:02	QAMDTSTVVL	0.9992	0.9768	0.766	327.7	1.1048	97.77	1/888	1/7086
INDEL	Breast	SEC31A_G743del	HLA-A02:01	AMDTSTVVLL	0.9832	0.7102	0.3124	186.6	1.5753	97.77	1/888	1/7086
INDEL	Breast	SRPK2_R295Kfs*20	HLA-C16:01	TSPQLHLPM	0.8317	0.9785	0.5038	207.3	0.6827	26.45	1/888	1/7086
INDEL	Breast	SRPK2_R295Kfs*20	HLA-C03:02	TSPQLHLPM	0.993	0.9679	0.7616	310	1.0616	26.45	1/888	1/7086
INDEL	Breast	SRPK2_R295Kfs*20	HLA-C16:01	KTSPQLHLPM	0.9932	0.9743	1.4654	499.5	1.3736	26.45	1/888	1/7086
INDEL	Breast	CNOT7_S266Tfs*14	HLA-C16:01	YGLGSGTVI	0.614	0.9696	0.9152	90.9	0.3181	22.14	1/888	1/7086
INDEL	Breast	CNOT7_S266Tfs*14	HLA-C03:02	YGLGSGTVI	0.9248	0.9661	1.1117	49.4	0.2392	22.14	1/888	1/7086
INDEL	Breast	CNOT7_S266Tfs*14	HLA-B58:01	GTVILCTEW	0.9951	0.9946	0.1336	22.9	0.1531	22.14	1/888	1/7086
INDEL	Breast	CNOT7_S266Tfs*14	HLA-B58:01	SGTVILCTEW	0.9952	0.9911	1.2431	48.8	0.281	22.14	1/888	1/7086
INDEL	Breast	CNOT7_S266Tfs*14	HLA-B58:01	GSGTVILCTEW	0.9959	0.9867	0.6556	141	0.6047	22.14	1/888	1/7086
INDEL	Breast	ATP6V1H_R363Mfs*8	HLA-C16:01	YSSELKSGM	0.9498	0.9581	0.5279	114.3	0.3901	81.65	1/888	1/7086
INDEL	Breast	ATP6V1H_R363Mfs*8	HLA-C03:02	YSSELKSGM	0.998	0.9356	0.7533	32.1	0.1514	81.65	1/888	1/7086
INDEL	Breast	ATP6V1H_R363Mfs*8	HLA-B45:01	SELKSGMES	0.9842	0.919	0.6429	119.4	0.129	81.65	1/888	1/7086
INDEL	Breast	ATP6V1H_R363Mfs*8	HLA-B45:01	SELKSGMESCA	0.9964	0.9074	0.4113	282.9	0.2774	81.65	1/888	1/7086
INDEL	Breast	PRKAB1_G88Rfs*15	HLA-A02:01	LLIWVLQQL	0.9667	0.6422	0.2039	26.2	0.3574	7.82	1/888	5/7086
INDEL	Breast	PRKAB1_G88Rfs*15	HLA-A02:01	SLLIWVLQQL	0.8977	0.784	0.6488	102.3	1.0728	7.82	1/888	5/7086
INDEL	Breast	ATXN7_I135Sfs*85	HLA-B53:01	QPMMISTW	0.8514	0.7582	0.8208	183.3	0.2111	4.93	1/888	1/7086
INDEL	Breast	ATXN7_I135Sfs*85	HLA-B53:01	MPSVQPMMI	0.9816	0.514	0.0583	19.9	0.022	4.93	1/888	1/7086
INDEL	Breast	ATXN7_I135Sfs*85	HLA-B53:01	QPMMISTWW	0.9679	0.9259	0.4438	17.4	0.0189	4.93	1/888	1/7086
INDEL	Breast	ATXN7_I135Sfs*85	HLA-B44:03	REDMPSVQPM	0.9555	0.9212	1.3306	328	0.3231	4.93	1/888	1/7086
INDEL	Breast	PTPRT_D1111Sfs*68	HLA-B53:01	MCLCTMPSW	0.9009	0.8075	1.8644	361.5	0.3735	1.15	1/888	1/7086
INDEL	Breast	APOBEC3B_V349Gfs*71	HLA-B44:03	FEYCWDTFGW	0.9893	0.9939	0.7438	30.2	0.0303	9	1/888	1/7086
INDEL	Breast	MAP3K1_P1474Lfs*16	HLA-C03:03	SATTAPSIL	0.9987	0.9863	0.3593	30.2	0.1353	83.94	1/888	1/7086
INDEL	Breast	MAP3K1_P1474Lfs*16	HLA-C03:03	TTAPSILHI	0.995	0.9865	0.0412	455.2	0.9426	83.94	1/888	1/7086
INDEL	Breast	MAP3K1_P1474Lfs*16	HLA-B15:01	ILHICLLVY	0.9983	0.5218	0.5741	195.2	0.8962	83.94	1/888	1/7086
INDEL	Breast	MAP3K1_P1474Lfs*16	HLA-A02:01	CLLVYEMWL	0.8711	0.6646	1.4289	260.2	1.9468	83.94	1/888	1/7086
INDEL	Breast	MAP3K1_P1474Lfs*16	HLA-A02:01	LVYEMWLFVV	0.9686	0.5409	1.1142	49.2	0.6208	83.94	1/888	1/7086
INDEL	Breast	DUOX1_V1127Wfs*24	HLA-C03:03	AAWTSIASL	0.9997	0.9951	0.2604	19	0.0807	3.02	1/888	1/7086
INDEL	Breast	DUOX1_V1127Wfs*24	HLA-B15:01	SQSYTVWAM	0.9895	0.8956	0.719	30.9	0.143	3.02	1/888	1/7086
INDEL	Breast	CECR5_S353Tfs*52	HLA-B15:01	SLHSTGTETY	0.9999	0.9044	0.2268	21.9	0.091	13.02	1/888	1/7086
INDEL	Breast	IRF2BP2_M464Yfs*81	HLA-C16:01	RAAGGHPF	0.991	0.9869	0.7594	454.5	1.2906	203.31	1/888	1/7086
INDEL	Breast	IRF2BP2_M464Yfs*81	HLA-C16:01	FAQVLLPL	0.9985	0.9783	0.5795	431.7	1.2419	203.31	1/888	1/7086
INDEL	Breast	IRF2BP2_M464Yfs*81	HLA-C03:03	FAQVLLPL	1	0.995	0.5671	153.1	0.4745	203.31	1/888	1/7086
INDEL	Breast	IRF2BP2_M464Yfs*81	HLA-C16:01	SGNQCPAVL	0.5889	0.9789	0.7905	292.8	0.9237	203.31	1/888	1/7086
INDEL	Breast	IRF2BP2_M464Yfs*81	HLA-C16:01	FCAVPVRPF	0.6897	0.9547	0.6973	399.4	1.1654	203.31	1/888	1/7086
INDEL	Breast	IRF2BP2_M464Yfs*81	HLA-C03:03	FCAVPVRPF	0.9754	0.9681	0.8361	323.1	0.7552	203.31	1/888	1/7086
INDEL	Breast	IRF2BP2_M464Yfs*81	HLA-C16:01	FAQVLLPLL	0.9918	0.982	0.1947	91.2	0.319	203.31	1/888	1/7086
INDEL	Breast	IRF2BP2_M464Yfs*81	HLA-C03:03	FAQVLLPLL	0.9996	0.9947	0.1718	47.7	0.2016	203.31	1/888	1/7086
INDEL	Breast	IRF2BP2_M464Yfs*81	HLA-A02:01	LLSGNQCPAV	0.988	0.6157	0.6692	113.7	1.1485	203.31	2/888	2/7086
INDEL	Breast	IRF2BP2_M464Yfs*81	HLA-A02:01	LLSGNQCPAV	0.988	0.6157	0.6692	113.7	1.1485	203.31	2/888	2/7086
INDEL	Breast	IRF2BP2_M464Yfs*81	HLA-A02:01	GLLSGNQCPAV	0.9929	0.578	1.0547	72.7	0.8497	203.31	2/888	2/7086
INDEL	Breast	IRF2BP2_M464Yfs*81	HLA-A02:01	GLLSGNQCPAV	0.9929	0.578	1.0547	72.7	0.8497	203.31	2/888	2/7086
INDEL	Breast	TJP1_D842Lfs*18	HLA-C05:01	STDSRHTSL	0.9999	0.9201	0.2151	113.7	0.0614	25.82	1/888	1/7086
INDEL	Breast	TJP1_D842Lfs*18	HLA-B27:05	SRHTSLTMK	0.9991	0.8516	0.5999	212.1	0.6525	25.82	1/888	1/7086
INDEL	Breast	TJP1_D842Lfs*18	HLA-C05:01	YSTDSRHTSL	0.9998	0.872	0.3974	294.9	0.1287	25.82	1/888	1/7086
INDEL	Breast	TP53_R209Kfs*6	HLA-A02:01	YLDDKHFST	0.9773	0.5325	0.3089	13.2	0.1601	12.69	4/888	5/7086
INDEL	Breast	TP53_R209Kfs*6	HLA-C05:01	YLDDKHFST	0.9988	0.9493	0.451	323.3	0.138	12.69	3/888	4/7086
INDEL	Breast	TBC1D8_E148Sfs*58	HLA-B07:02	SPRRRSWSP	0.9909	0.6478	1.3526	480	0.8107	12.48	1/888	1/7086
INDEL	Breast	TBC1D8_E148Sfs*58	HLA-B07:02	TPSSWARNL	0.9986	0.7271	0.1947	122.1	0.3422	12.48	1/888	1/7086
INDEL	Breast	TBC1D8_E148Sfs*58	HLA-A32:01	SSWARNLNL	0.9585	0.9339	0.6758	156.4	0.2795	12.48	1/888	1/7086
INDEL	Breast	TBC1D8_E148Sfs*58	HLA-B07:02	CPARAGCTSA	0.9948	0.5948	1.3034	175.2	0.4325	12.48	1/888	1/7086
INDEL	Breast	TBC1D8_E148Sfs*58	HLA-A32:01	SSWARNLNLW	0.9949	0.9571	0.8294	229.7	0.3952	12.48	1/888	1/7086
INDEL	Breast	GATA3_D335Gfs*17	HLA-B35:01	WALLQASQY	0.9946	0.7042	0.4061	27.2	0.1088	1529.03	2/888	2/7086
INDEL	Breast	CD68_A30del	HLA-A32:01	STLLPSFTV	0.7681	0.9846	0.8228	98.5	0.172	3.66	1/888	1/7086
INDEL	Breast	KDM6B_A1474Pfs*32	HLA-B07:02	QPPAGATTL	0.9961	0.6343	0.148	293.1	0.609	8.27	1/888	1/7086
INDEL	Breast	KDM6B_A1474Pfs*32	HLA-A32:01	GTWGPSPPI	0.9334	0.993	1.8985	78.4	0.1451	8.27	1/888	1/7086
INDEL	Breast	KDM6B_A1474Pfs*32	HLA-B35:01	WPWNDTSGM	0.9954	0.7094	0.6079	8.8	0.0306	8.27	1/888	1/7086
INDEL	Breast	EGFL6_I184del	HLA-B35:01	CASGKVCPY	0.9583	0.8534	0.557	39.3	0.1522	9.75	1/888	1/7086
INDEL	Breast	PLEKHH1_R276Sfs*35	HLA-A31:01	GVRVWLLLR	0.9749	0.6603	0.2942	26.7	0.2059	1.05	1/888	1/7086
INDEL	Breast	PLEKHH1_R276Sfs*35	HLA-A02:01	KLLTFSVVQL	0.991	0.6529	0.2745	33.6	0.4469	1.05	1/888	1/7086
INDEL	Breast	TP53_P128Lfs*42	HLA-A31:01	TRCFANWPR	0.8307	0.6711	1.749	310.6	1.5974	9.79	1/888	1/7086
INDEL	Breast	TP53_P128Lfs*42	HLA-C05:01	FANWPRPAL	0.9884	0.979	0.0154	414.6	0.1664	9.79	1/888	1/7086
INDEL	Breast	TP53_P128Lfs*42	HLA-A31:01	STRCFANWPR	0.9944	0.6044	0.2699	4.8	0.0098	9.79	1/888	1/7086
INDEL	Breast	TP53_P128Lfs*42	HLA-A31:01	CSCGLIPHPR	0.9708	0.7998	0.6875	56	0.471	9.79	1/888	1/7086
INDEL	Breast	MACF1_N1798Gfs*27	HLA-A03:01	AVRHGLCYPHK	0.9892	0.623	1.6762	114	0.4035	15.29	1/888	1/7086
INDEL	Breast	ZNF501_Y218Vfs*74	HLA-B57:01	HTLVSITEF	0.9949	0.8645	0.3283	317.7	0.5309	1.63	1/888	1/7086
INDEL	Breast	ZNF501_Y218Vfs*74	HLA-C06:02	HFFDIRGFM	0.701	0.9878	0.9472	377.5	0.1267	1.63	2/888	2/7086
INDEL	Breast	ZNF501_Y218Vfs*74	HLA-C06:02	HFFDIRGFM	0.701	0.9878	0.9472	377.5	0.1267	1.63	2/888	2/7086
INDEL	Breast	NIPAL2_I55Qfs*83	HLA-B57:01	RSVRLCVCY	0.9933	0.9527	0.2604	477.4	0.7225	74.71	1/888	1/7086
INDEL	Breast	AMBRA1_I1256Ffs*17	HLA-B57:01	SSSPVPFLF	0.9988	0.9023	0.1354	43.5	0.1202	26.81	1/888	1/7086
INDEL	Breast	AMBRA1_I1256Ffs*17	HLA-B57:01	PSSSPVPFLF	0.9956	0.9074	1.211	293	0.4975	26.81	1/888	1/7086
INDEL	Breast	AMBRA1_I1256Ffs*17	HLA-B57:01	LPSSSPVPFLF	0.9962	0.9346	1.671	249	0.4459	26.81	1/888	1/7086
INDEL	Breast	AMBRA1_I1256Ffs*17	HLA-B57:01	SSSPVPFLFPF	0.9989	0.9241	1.0445	296.8	0.5021	26.81	1/888	1/7086
INDEL	Breast	KIAA0195_M869Nfs*18	HLA-B44:02	LELPHLPHTQW	0.9994	0.8301	0.1132	241.4	0.2617	10.32	1/888	1/7086
INDEL	Breast	UBE2C_K18_R28del	HLA-A03:01	AAARGPVGK	0.9887	0.6513	0.6392	342.5	0.9363	140.96	1/888	1/7086
INDEL	Breast	GNPTAB_L260Cfs*7	HLA-A02:01	LLQCIQRPV	0.9856	0.7411	0.5904	88.7	0.9793	22.79	1/888	1/7086
INDEL	Breast	GNPTAB_L260Cfs*7	HLA-A02:01	KLLQCIQRPV	0.9862	0.8282	0.8247	28.6	0.386	22.79	1/888	1/7086
INDEL	Breast	NFAT5_E914Rfs*33	HLA-C03:03	FSKWKPSAI	0.9875	0.99	0.3822	159.1	0.4853	11.08	1/888	1/7086
INDEL	Breast	NFAT5_E914Rfs*33	HLA-C03:03	SAIASLPADF	0.997	0.9818	1.1056	448.3	0.9307	11.08	1/888	1/7086
INDEL	Breast	NFAT5_E914Rfs*33	HLA-B27:05	SRVIPFNCFSK	0.9999	0.823	0.585	310.1	0.8724	11.08	1/888	1/7086
INDEL	Breast	TP53_Q165Afs*6	HLA-B08:01	RAMAIYKAL	0.867	0.5681	0.3009	155.6	0.2771	11.66	1/888	1/7086
INDEL	Breast	TP53_Q165Afs*6	HLA-C03:03	RAMAIYKAL	0.9967	0.99	0.0835	10	0.0359	11.66	1/888	1/7086
INDEL	Breast	TP53_Q165Afs*6	HLA-B27:05	VRAMAIYKAL	0.9997	0.865	1.0837	97.7	0.3258	11.66	1/888	1/7086
INDEL	Breast	MAP3K1_T945Nfs*57	HLA-C16:01	SVFELLSFI	0.9282	0.9856	1.3416	153.3	0.5225	56.51	2/888	2/7086
INDEL	Breast	MAP3K1_T945Nfs*57	HLA-C16:01	SVFELLSFI	0.9282	0.9856	1.3416	153.3	0.5225	56.51	2/888	2/7086
INDEL	Breast	MAP3K1_T945Nfs*57	HLA-C16:01	FISSFPINV	0.9184	0.979	0.3461	145.9	0.4982	56.51	2/888	2/7086
INDEL	Breast	MAP3K1_T945Nfs*57	HLA-C16:01	FISSFPINV	0.9184	0.979	0.3461	145.9	0.4982	56.51	2/888	2/7086
INDEL	Breast	MAP3K1_T945Nfs*57	HLA-C16:01	VSSLVNPFF	0.6292	0.9545	0.3367	418.3	1.2118	56.51	2/888	2/7086
INDEL	Breast	MAP3K1_T945Nfs*57	HLA-C16:01	VSSLVNPFF	0.6292	0.9545	0.3367	418.3	1.2118	56.51	2/888	2/7086
INDEL	Breast	MAP3K1_T945Nfs*57	HLA-C16:01	SSLVNPFFF	0.6059	0.9548	0.463	154.7	0.527	56.51	2/888	2/7086
INDEL	Breast	MAP3K1_T945Nfs*57	HLA-C16:01	SSLVNPFFF	0.6059	0.9548	0.463	154.7	0.527	56.51	2/888	2/7086
INDEL	Breast	MAP3K1_T945Nfs*57	HLA-B44:03	FELLSFISSF	0.9764	0.9249	1.0496	117.9	0.1361	56.51	1/888	1/7086
INDEL	Breast	MAP3K1_T945Nfs*57	HLA-C16:01	SSFPINVSSL	0.9946	0.9719	0.4753	119	0.4043	56.51	2/888	2/7086
INDEL	Breast	MAP3K1_T945Nfs*57	HLA-C16:01	SSFPINVSSL	0.9946	0.9719	0.4753	119	0.4043	56.51	2/888	2/7086
INDEL	Breast	ARID1A_Y1055Cfs*49	HLA-A02:01	LLEKAVYPV	0.993	0.6422	0.2896	12.2	0.1457	63.46	1/888	1/7086
INDEL	Breast	PIK3CA_H450_P458del	HLA-A02:01	NLWPVPIGV	0.9957	0.8446	0.0005	7.1	0.0692	24.05	1/888	1/7086
INDEL	Breast	PIK3CA_H450_P458del	HLA-A02:01	ALNLWPVPIGV	0.9889	0.5806	1.8072	38.2	0.4981	24.05	1/888	1/7086
INDEL	Breast	GSTCD_R484Qfs*17	HLA-B35:01	HSSKYGIFY	0.8216	0.718	0.5347	186.7	0.4717	1.98	1/888	1/7086
INDEL	Breast	ABL1_S716Mfs*52	HLA-B08:01	KVRSRLCL	0.9985	0.6759	1.8072	108	0.1918	115.56	1/888	1/7086
INDEL	Breast	ABL1_S716Mfs*52	HLA-A03:01	KVRSRLCLGR	0.9125	0.5616	1.202	202.7	0.6501	115.56	1/888	1/7086
INDEL	Breast	TP53_F328Sfs*17	HLA-B07:02	SPFRSVGVSA	0.9983	0.5998	0.0214	30.9	0.1109	34.31	1/888	1/7086
INDEL	Breast	GALNT14_Y466Tfs*47	HLA-B35:01	LAPQWFLSF	0.9868	0.9257	0.5365	118.3	0.3554	1.19	1/888	1/7086
INDEL	Breast	GALNT14_Y466Tfs*47	HLA-C03:04	LAPQWFLSF	0.9919	0.9939	0.4078	217.8	0.5942	1.19	1/888	1/7086
INDEL	Breast	GALNT14_Y466Tfs*47	HLA-C03:04	FLSFARMEM	0.9887	0.9891	0.6333	38.7	0.1746	1.19	1/888	1/7086
INDEL	Breast	GALNT14_Y466Tfs*47	HLA-C03:04	MTDSNGPKL	0.9865	0.9791	0.1775	126.3	0.4205	1.19	1/888	1/7086
INDEL	Breast	EXT1_E320Gfs*39	HLA-C03:04	MIIGKCCTM	0.9924	0.9891	0.7616	267.2	0.675	43.72	1/888	1/7086
INDEL	Breast	EXT1_E320Gfs*39	HLA-B35:01	MPLSVWFLV	0.9219	0.965	1.1086	81.3	0.2757	43.72	1/888	1/7086
INDEL	Breast	SAP130_P159del	HLA-C03:04	APAPSTLSL	0.9903	0.9778	0.1688	111.2	0.3875	54.33	1/888	1/7086
INDEL	Breast	SAP130_P159del	HLA-C03:04	IAPAPSTLSL	0.9996	0.9614	0.3352	56.3	0.2343	54.33	1/888	1/7086
INDEL	Breast	ZNF510_H534Kfs*129	HLA-C03:04	FSVINVGKL	0.9993	0.98	0.3657	38.8	0.1751	7.68	1/888	1/7086
INDEL	Breast	ZNF510_H534Kfs*129	HLA-C12:02	FSVINVGKL	0.9703	0.9354	0.5312	111.4	0.1371	7.68	1/888	1/7086
INDEL	Breast	ZNF510_H534Kfs*129	HLA-C12:02	LARNQTSEY	0.8856	0.9623	0.1872	173.9	0.2362	7.68	1/888	1/7086
INDEL	Breast	ZNF510_H534Kfs*129	HLA-C03:04	NAMNMGNYV	0.9361	0.9907	1.2661	197.4	0.5588	7.68	1/888	1/7086
INDEL	Breast	USP15_Q378Ifs*19	HLA-C03:04	SAARLSRTV	0.971	0.9789	0.7356	225.6	0.6077	9.81	1/888	1/7086
INDEL	Breast	SLC9A6_R174Sfs*58	HLA-C07:02	HFFSKSWVY	0.6866	0.7768	0.1086	245.3	0.1613	10.37	1/888	2/7086
INDEL	Breast	SLC9A6_R174Sfs*58	HLA-C07:02	IRFSWNSNF	0.8631	0.8928	0.1336	62	0.03	10.37	1/888	2/7086
INDEL	Breast	SLC9A6_R174Sfs*58	HLA-C07:01	IRFSWNSNF	0.997	0.549	0.1317	78.7	0.0262	10.37	1/888	1/7086
INDEL	Breast	SLC9A6_R174Sfs*58	HLA-C07:02	FRYWVNNVW	0.7852	0.9541	0.1688	400.3	0.2638	10.37	1/888	2/7086
INDEL	Breast	SLC9A6_R174Sfs*58	HLA-C07:01	FRYWVNNVW	0.9824	0.7964	0.1581	436.6	0.1494	10.37	1/888	1/7086
INDEL	Breast	SLC9A6_R174Sfs*58	HLA-C07:02	IRFSWNSNFL	0.9841	0.9182	0.5941	262.2	0.1719	10.37	1/888	2/7086
INDEL	Breast	SLC9A6_R174Sfs*58	HLA-C07:01	IRFSWNSNFL	0.9983	0.5986	0.4382	163.9	0.0635	10.37	1/888	1/7086
INDEL	Breast	SLC9A6_R174Sfs*58	HLA-C07:02	FRYWVNNVWL	0.9654	0.9592	0.9711	171.2	0.1067	10.37	1/888	2/7086
INDEL	Breast	SLC9A6_R174Sfs*58	HLA-C07:01	FRYWVNNVWL	0.9919	0.7794	0.6535	130	0.0514	10.37	1/888	1/7086
INDEL	Breast	DOCK6_V1400Dfs*124	HLA-B56:01	CPECPLLAA	0.9691	0.5848	0.4967	131.2	0.0949	5.76	1/888	1/7086
INDEL	Breast	DOCK6_V1400Dfs*124	HLA-B07:02	AVRGGHGAV	0.9958	0.6868	0.8991	73.7	0.2342	5.76	1/888	1/7086
INDEL	Breast	DOCK6_V1400Dfs*124	HLA-B07:02	RPVPEAPTTL	0.9974	0.7	0.1196	29.3	0.1064	5.76	1/888	1/7086
INDEL	Breast	DOCK6_V1400Dfs*124	HLA-B07:02	HPHARQRLAV	0.9917	0.5151	0.5195	14.9	0.0477	5.76	1/888	1/7086
INDEL	Breast	RAPGEF4_E917Gfs*13	HLA-A02:01	KLGTSSHPL	0.9298	0.7915	0.4698	235.5	1.8241	3.63	1/888	1/7086
INDEL	Breast	TRIM46_L396Sfs*23	HLA-B57:03	SAIASSTW	0.9975	0.9917	0.3787	88.7	0.1899	3.13	1/888	1/7086
INDEL	Breast	TRIM46_L396Sfs*23	HLA-B57:03	PSAIASSTW	0.8175	0.9694	0.5471	67	0.1428	3.13	1/888	1/7086
INDEL	Breast	TRIM46_L396Sfs*23	HLA-B57:03	APPSAIASSTW	0.9869	0.9733	0.4196	95	0.2032	3.13	1/888	1/7086
INDEL	Breast	B4GALT3_T125Nfs*46	HLA-B57:03	AAPAACLW	0.9967	0.9926	0.7726	289.7	0.5265	61.7	1/888	1/7086
INDEL	Breast	B4GALT3_T125Nfs*46	HLA-A30:01	RSRNSHHCA	0.9923	0.9568	0.8186	5.7	0.0097	61.7	1/888	1/7086
INDEL	Breast	B4GALT3_T125Nfs*46	HLA-C12:03	GAPPAPAAL	0.9889	0.9951	0.2227	214.7	0.8687	61.7	1/888	1/7086
INDEL	Breast	B4GALT3_T125Nfs*46	HLA-B57:03	AALPPAPLL	0.951	0.9956	0.262	264.8	0.4917	61.7	1/888	1/7086
INDEL	Breast	B4GALT3_T125Nfs*46	HLA-C12:03	AALPPAPLL	0.9602	0.996	0.1793	160.4	0.6827	61.7	1/888	1/7086
INDEL	Breast	B4GALT3_T125Nfs*46	HLA-B57:03	LAAPAACLW	0.982	0.9933	0.0618	7	0.0078	61.7	1/888	1/7086
INDEL	Breast	B4GALT3_T125Nfs*46	HLA-B57:03	LCHPPGWKW	0.9584	0.999	0.348	367.4	0.6271	61.7	1/888	1/7086
INDEL	Breast	B4GALT3_T125Nfs*46	HLA-B57:03	LLAAPAACLW	0.9774	0.9939	0.4718	21	0.0307	61.7	1/888	1/7086
INDEL	Breast	C1orf112_L82Ffs*7	HLA-A25:01	ESIIFSPSY	0.9892	0.6737	0.4789	429.4	0.0417	6.29	1/888	1/7086
INDEL	Breast	C1orf112_L82Ffs*7	HLA-B18:01	QESIIFSPSY	0.9501	0.8142	0.4967	95.3	0.067	6.29	1/888	1/7086
INDEL	Breast	PLA1A_E358Lfs*24	HLA-C07:01	LRNKDTNIL	0.9577	0.6746	0.2526	423.5	0.1461	2.16	1/888	1/7086
INDEL	Breast	PLA1A_E358Lfs*24	HLA-A30:01	RNKDTNILA	0.9174	0.8766	1.3493	106.1	0.5278	2.16	1/888	1/7086
INDEL	Breast	PLA1A_E358Lfs*24	HLA-C12:03	LAVTSPLHL	0.9766	0.9872	0.051	53.9	0.2412	2.16	1/888	1/7086
INDEL	Breast	PLA1A_E358Lfs*24	HLA-C12:03	RSPYLSSNAM	0.9676	0.9705	1.7731	308.9	1.1111	2.16	1/888	1/7086
INDEL	Breast	CGNL1_E247Rfs*11	HLA-A30:01	RVGRRPFSL	0.9854	0.8978	0.9152	182.3	0.881	21.63	1/888	1/7086
INDEL	Breast	NF1_V2627Nfs*8	HLA-C12:03	TVLATLNEF	0.7451	0.9798	0.637	226.4	0.9023	5.2	1/888	1/7086
INDEL	Breast	NF1_V2627Nfs*8	HLA-B57:03	LTVLATLNEF	0.9957	0.9842	0.4933	248.8	0.4693	5.2	1/888	1/7086
INDEL	Breast	GATA3_S402Yfs*107	HLA-B07:02	APAIQPVL	0.9964	0.7344	0.0255	100.2	0.2968	1581.82	1/888	1/7086
INDEL	Breast	GATA3_S402Yfs*107	HLA-B07:02	QPVLWTTPPL	0.9713	0.6432	0.7226	32.7	0.1156	1581.82	1/888	1/7086
INDEL	Breast	NME5_L173Tfs*6	HLA-A02:01	TLLEGTHRA	0.9772	0.5366	0.0201	29.3	0.3942	2.41	2/888	2/7086
INDEL	Breast	NME5_L173Tfs*6	HLA-A02:01	TLLEGTHRA	0.9772	0.5366	0.0201	29.3	0.3942	2.41	2/888	2/7086
INDEL	Breast	NME5_L173Tfs*6	HLA-A02:01	TLLEGTHRAL	0.9227	0.5783	0.433	54.3	0.6739	2.41	2/888	2/7086
INDEL	Breast	NME5_L173Tfs*6	HLA-A02:01	TLLEGTHRAL	0.9227	0.5783	0.433	54.3	0.6739	2.41	2/888	2/7086
INDEL	Breast	HAS3_G404Pfs*103	HLA-B51:01	VPLLPPLYV	0.9973	0.7093	0.0762	405	0.0642	1.93	1/888	1/7086
INDEL	Breast	HAS3_G404Pfs*103	HLA-A02:01	GLHSLLPGPV	0.95	0.7295	1.1706	25.8	0.3528	1.93	2/888	2/7086
INDEL	Breast	HAS3_G404Pfs*103	HLA-A02:01	GLHSLLPGPV	0.95	0.7295	1.1706	25.8	0.3528	1.93	2/888	2/7086
INDEL	Breast	THAP9_L80dup	HLA-A02:01	KLLKKGAVPSV	0.9922	0.5917	0.9687	20.9	0.2849	3.43	1/888	1/7086
INDEL	Breast	MTBP_E125Ifs*34	HLA-C07:02	NHYPWLISM	0.7525	0.8946	0.0201	106.4	0.0578	4.59	1/888	1/7086
INDEL	Breast	CLCC1_V288_P295del	HLA-B35:01	LPTKALAVT	0.7622	0.8596	1.4215	346.4	0.6952	16.2	1/888	1/7086
INDEL	Breast	CLCC1_V288_P295del	HLA-A31:01	KYYELLLPTK	0.9523	0.502	0.4382	98.8	0.749	16.2	1/888	1/7086
INDEL	Breast	CLCC1_V288_P295del	HLA-A30:01	KYYELLLPTK	0.974	0.9129	0.4769	75.7	0.3821	16.2	1/888	1/7086
INDEL	Breast	CLCC1_V288_P295del	HLA-B35:01	LPTKALAVTF	0.9929	0.8973	0.0762	21.9	0.0904	16.2	1/888	1/7086
INDEL	Breast	MEIS1_Q307Hfs*11	HLA-A30:01	KTRDSPSFK	0.9996	0.8005	0.259	3.3	0.0066	3.38	1/888	1/7086
INDEL	Breast	PTGR1_N298Rfs*?	HLA-A31:01	WVLEIKRER	0.8608	0.5435	0.4548	199.2	1.2036	23.17	1/888	1/7086
INDEL	Breast	HERC4_M193Kfs*29	HLA-A30:01	KSLLGIPFK	0.9946	0.6598	0.2382	11.8	0.0343	3.18	1/888	1/7086
INDEL	Breast	HERC4_M193Kfs*29	HLA-B35:01	EPIVLYSPF	0.9952	0.7734	0.6655	19.2	0.0785	3.18	1/888	1/7086
INDEL	Breast	HERC4_M193Kfs*29	HLA-C16:01	VLYSPFLEL	0.9801	0.9905	0.2636	75.7	0.2645	3.18	1/888	1/7086
INDEL	Breast	HERC4_M193Kfs*29	HLA-C16:01	YSPFLELSL	0.9818	0.986	0.4277	87.3	0.3053	3.18	1/888	1/7086
INDEL	Breast	KLRC1_N190Mfs*9	HLA-B35:01	HPWVTMMVW	0.9892	0.8625	0.4475	61.8	0.2275	1.05	1/888	1/7086
INDEL	Breast	KLRC1_N190Mfs*9	HLA-A31:01	MMVWLSNMR	0.9735	0.6578	0.4646	18.6	0.13	1.05	1/888	1/7086
INDEL	Breast	KLRC1_N190Mfs*9	HLA-A31:01	TMMVWLSNMR	0.973	0.6719	0.6467	25.7	0.1963	1.05	1/888	1/7086
INDEL	Breast	RPGRIP1_T652_T655del	HLA-B35:01	QAGDTQPTY	0.7996	0.9127	0.3987	51.9	0.2014	1.44	1/888	1/7086
INDEL	Breast	RPGRIP1_T652_T655del	HLA-B35:01	QPTYSFYDF	0.9758	0.9321	0.5002	28.3	0.1131	1.44	1/888	1/7086
INDEL	Breast	CISH_L210Pfs*125	HLA-C02:02	ATAPAHGRL	0.6705	0.9847	0.3925	473.5	0.3267	37.57	1/888	1/7086
INDEL	Breast	STX11_L11Sfs*51	HLA-A02:05	RLAELLDSS	0.9861	0.6395	0.8065	249.8	1.4508	3.01	1/888	1/7086
INDEL	Breast	COMMD2_H160Tfs*27	HLA-B15:01	NQNGDTTPKF	0.9997	0.8277	0.7881	174.7	0.8238	17.61	1/888	1/7086
INDEL	Breast	MAP3K1_S292Ffs*9	HLA-C14:02	RAPFTRWLL	0.6533	0.9824	1.4692	361.7	1.0133	27.24	1/888	1/7086
INDEL	Breast	NCOR2_S612Efs*39	HLA-B15:01	ASMELNEEF	0.9964	0.9169	0.5671	211.3	0.9525	65.29	1/888	1/7086
INDEL	Breast	NCOR2_S612Efs*39	HLA-C03:03	ASMELNEEF	0.9977	0.9855	0.6212	300.7	0.7241	65.29	1/888	1/7086
INDEL	Breast	MTIF2_V710del	HLA-B44:03	MEFQVGDRICY	0.9998	0.7944	0.0187	173.2	0.1917	33.52	1/888	1/7086
INDEL	Breast	MTIF2_V710del	HLA-B18:01	MEFQVGDRICY	0.9976	0.5683	0.0315	56	0.0388	33.52	1/888	1/7086
INDEL	Breast	UBE2J1_T241Yfs*6	HLA-C12:03	SAASFHQPY	0.5204	0.9641	0.2727	37.2	0.1584	57.77	1/888	1/7086
INDEL	Breast	STRN3_L661del	HLA-C07:02	IYDETSQSL	0.9703	0.9104	0.033	301	0.1982	26.43	1/888	1/7086
INDEL	Breast	STRN3_L661del	HLA-C14:02	IYDETSQSL	0.9869	0.9309	0.0299	14.7	0.0346	26.43	1/888	1/7086
INDEL	Breast	STRN3_L661del	HLA-C14:02	VIYDETSQSL	0.9937	0.9093	0.7702	387.7	1.0816	26.43	1/888	1/7086
INDEL	Breast	ACSS3_G406Efs*19	HLA-A32:01	KVQNIICGW	0.9948	0.9709	0.0154	43.7	0.0788	15.79	1/888	1/7086
INDEL	Breast	ACSS3_G406Efs*19	HLA-B57:01	KVQNIICGW	0.9985	0.9833	0.0142	37.1	0.1001	15.79	1/888	1/7086
INDEL	Breast	CMTR2_Q723Rfs*20	HLA-A02:01	RLCQWRYSL	0.9613	0.5916	0.0396	96.4	1.0341	14.67	1/888	1/7086
INDEL	Breast	CMTR2_Q723Rfs*20	HLA-A32:01	RLCQWRYSL	0.993	0.947	0.0315	11.3	0.0152	14.67	1/888	1/7086
INDEL	Breast	CMTR2_Q723Rfs*20	HLA-C03:04	YSLRGPCLI	0.9333	0.994	1.2398	85.7	0.3277	14.67	1/888	1/7086
INDEL	Breast	CMTR2_Q723Rfs*20	HLA-C06:02	WRYSLRGPCL	0.8537	0.996	0.9814	226.2	0.0805	14.67	1/888	1/7086
INDEL	Breast	CMTR2_Q723Rfs*20	HLA-B57:01	YSLRGPCLIF	0.999	0.9709	0.557	460.7	0.7023	14.67	1/888	1/7086
INDEL	Breast	TP53_R209Kfs*6	HLA-A02:01	YLDDKHFST	0.9773	0.5325	0.3089	13.2	0.1601	13.55	4/888	5/7086
INDEL	Breast	SMAD4_N316Ifs*20	HLA-C03:04	LAFQPPISI	0.9984	0.994	0.0441	7.3	0.0274	6.08	1/888	1/7086
INDEL	Breast	SMAD4_N316Ifs*20	HLA-C03:04	FQPPISIIL	0.984	0.9902	0.1418	214.2	0.5882	6.08	1/888	1/7086
INDEL	Breast	SMAD4_N316Ifs*20	HLA-C03:04	LLLSIGVPL	0.8651	0.9797	1.4358	234.8	0.6236	6.08	1/888	1/7086
INDEL	Breast	SMAD4_N316Ifs*20	HLA-C03:04	LAFQPPISII	0.9973	0.9917	0.5757	315.8	0.7452	6.08	1/888	1/7086
INDEL	Breast	SMAD4_N316Ifs*20	HLA-B57:01	LSIGVPLLTL	0.9968	0.9457	0.5671	438.9	0.6782	6.08	1/888	1/7086
INDEL	Breast	SMAD4_N316Ifs*20	HLA-C03:04	LSIGVPLLTL	0.9998	0.9888	0.4311	404.7	0.8661	6.08	1/888	1/7086
INDEL	Breast	SMAD4_N316Ifs*20	HLA-B57:01	IGVPLLTLKW	0.9999	0.962	0.4737	63.1	0.1658	6.08	1/888	1/7086
INDEL	Breast	SMAD4_N316Ifs*20	HLA-C03:04	LAFQPPISIIL	0.999	0.99	0.3445	479.1	0.9818	6.08	1/888	1/7086
INDEL	Breast	DPAGT1_I374Yfs*48	HLA-B15:01	LLLKVLGPY	0.9959	0.779	0.5165	32.8	0.1528	28.2	1/888	1/7086
INDEL	Breast	DPAGT1_I374Yfs*48	HLA-B15:01	WAVPSPSPF	0.9904	0.9124	0.8208	38.3	0.1878	28.2	1/888	1/7086
INDEL	Breast	DPAGT1_I374Yfs*48	HLA-C03:03	WAVPSPSPF	0.999	0.9846	0.5019	4.9	0.0176	28.2	1/888	1/7086
INDEL	Breast	DPAGT1_I374Yfs*48	HLA-A24:02	SWAVPSPSPF	0.9932	0.5479	0.8771	153.9	0.2941	28.2	1/888	1/7086
INDEL	Breast	TP53_I251Sfs*94	HLA-C03:03	VIYWDGTAL	0.9988	0.9927	0.3107	14.8	0.0602	32.31	1/888	1/7086
INDEL	Breast	TP53_I251Sfs*94	HLA-B08:01	RISARKGSL	0.975	0.7405	0.8422	219.6	0.3868	32.31	1/888	1/7086
INDEL	Breast	TP53_I251Sfs*94	HLA-C07:01	RRNHWMENI	0.9962	0.5777	0.0762	288.1	0.1045	32.31	1/888	1/7086
INDEL	Breast	TP53_I251Sfs*94	HLA-C03:03	VVIYWDGTAL	0.9986	0.9859	0.9687	447.4	0.9292	32.31	1/888	1/7086
INDEL	Breast	EPG5_L1082Ffs*52	HLA-B15:01	YLLKNEQFF	0.9483	0.9051	0.6594	303.9	1.2481	13.8	1/888	1/7086
INDEL	Breast	KMT2B_C1390Lfs*288	HLA-A24:02	LYTLRTVCW	0.9773	0.7039	0.1566	269.7	0.4492	21.25	1/888	1/7086
INDEL	Breast	KMT2B_C1390Lfs*288	HLA-B08:01	ESALRGWPL	0.9817	0.5903	0.5868	133.5	0.2392	21.25	1/888	1/7086
INDEL	Breast	KMT2B_C1390Lfs*288	HLA-C07:01	VRRPRPQVL	0.9853	0.6958	0.051	83.5	0.0305	21.25	1/888	1/7086
INDEL	Breast	KMT2B_C1390Lfs*288	HLA-C03:03	VAPIPGSCL	0.9955	0.9867	0.0031	325.8	0.7588	21.25	1/888	1/7086
INDEL	Breast	KMT2B_C1390Lfs*288	HLA-C07:01	IRAASRGSL	0.992	0.6349	0.5779	474.1	0.162	21.25	1/888	1/7086
INDEL	Breast	KMT2B_C1390Lfs*288	HLA-B08:01	LPQIRGCRL	0.9873	0.8248	0.3956	62	0.1104	21.25	1/888	1/7086
INDEL	Breast	KMT2B_C1390Lfs*288	HLA-B15:01	RLQGGGAAL	0.9871	0.9607	0.3332	257.7	1.1038	21.25	1/888	1/7086
INDEL	Breast	KMT2B_C1390Lfs*288	HLA-C03:03	RLQGGGAAL	0.9247	0.9946	0.4311	433.9	0.9057	21.25	1/888	1/7086
INDEL	Breast	KMT2B_C1390Lfs*288	HLA-C07:01	WRHGGLLPV	0.905	0.8619	0.6875	173	0.0666	21.25	1/888	1/7086
INDEL	Breast	KMT2B_C1390Lfs*288	HLA-C03:03	VLLPQQLPL	0.9427	0.9934	1.073	297.9	0.72	21.25	1/888	1/7086
INDEL	Breast	KMT2B_C1390Lfs*288	HLA-C07:01	WRHGGLLPVL	0.9981	0.9418	0.4311	428.8	0.1474	21.25	1/888	1/7086
INDEL	Breast	SDCCAG8_I410_L411del	HLA-C16:01	MLSQNIAQL	0.8799	0.9854	0.1132	143.3	0.4901	18.55	1/888	1/7086
INDEL	Breast	TRAPPC9_N547Pfs*49	HLA-A30:01	RVNQKSFHL	0.9953	0.7811	0.0558	126.9	0.6211	24.62	1/888	1/7086
INDEL	Breast	TRAPPC9_N547Pfs*49	HLA-C16:01	RVNQKSFHL	0.9746	0.9669	0.1527	84.9	0.2967	24.62	1/888	1/7086
INDEL	Breast	TRAPPC9_N547Pfs*49	HLA-A30:01	KSFHLFTNY	0.9318	0.8528	0.0734	124.5	0.6085	24.62	1/888	1/7086
INDEL	Breast	TRAPPC9_N547Pfs*49	HLA-C16:01	KSFHLFTNY	0.6158	0.9802	0.0214	306.2	0.9565	24.62	1/888	1/7086
INDEL	Breast	TRAPPC9_N547Pfs*49	HLA-A30:01	SFHLFTNYR	0.8627	0.8951	0.8884	304.5	1.3648	24.62	1/888	1/7086
INDEL	Breast	TRAPPC9_N547Pfs*49	HLA-B44:03	AEQENRFPV	0.9774	0.98	1.4943	391.8	0.3673	24.62	1/888	1/7086
INDEL	Breast	TRAPPC9_N547Pfs*49	HLA-A30:01	KSFHLFTNYR	0.9924	0.8885	0.891	75.7	0.3824	24.62	1/888	1/7086
INDEL	Breast	KCNMA1_P1161Mfs*10	HLA-C16:01	YVITNPMSL	0.9845	0.9847	0.0131	10.1	0.0137	5.39	1/888	1/7086
INDEL	Breast	ABLIM1_T451Rfs*49	HLA-A30:01	RSRAPSTPL	0.9928	0.8446	0.2825	5.8	0.0098	41.8	1/888	1/7086
INDEL	Breast	ABLIM1_T451Rfs*49	HLA-C16:01	RSRAPSTPL	0.9181	0.9733	0.557	24.4	0.0597	41.8	1/888	1/7086
INDEL	Breast	ABLIM1_T451Rfs*49	HLA-A30:01	ATLQPRPAL	0.7001	0.9554	0.0717	273.7	1.2477	41.8	1/888	1/7086
INDEL	Breast	ABLIM1_T451Rfs*49	HLA-C16:01	ATLQPRPAL	0.8416	0.9901	0.0495	62.8	0.2149	41.8	1/888	1/7086
INDEL	Breast	ABLIM1_T451Rfs*49	HLA-A30:01	MSRPAAGTPL	0.9391	0.869	1.6615	51.8	0.2698	41.8	1/888	1/7086
INDEL	Breast	ABLIM1_T451Rfs*49	HLA-C16:01	MSRPAAGTPL	0.9686	0.981	0.3851	174.6	0.5863	41.8	1/888	1/7086
INDEL	Breast	ABLIM1_T451Rfs*49	HLA-C16:01	RPAAGTPLSL	0.9544	0.9896	0.3137	257.7	0.8305	41.8	1/888	1/7086
INDEL	Breast	TPP1_A136Lfs*16	HLA-B44:03	AELLLPGLSF	0.9987	0.9825	0.0315	18.7	0.0116	120	1/888	1/7086
INDEL	Breast	TPP1_P93_T95del	HLA-C16:01	VADLVRPSL	0.9962	0.9853	0.0201	80.9	0.2831	120	1/888	1/7086
INDEL	Breast	TPP1_P93_T95del	HLA-A30:01	LVRPSLHTV	0.9868	0.9151	0.1547	48.9	0.256	120	1/888	1/7086
INDEL	Breast	TPP1_P93_T95del	HLA-A30:01	LVRPSLHTVQK	0.9922	0.7745	1.0781	81.8	0.4099	120	1/888	1/7086
INDEL	Breast	SACS_K362Rfs*10	HLA-A30:01	RLQAITSPV	0.925	0.9169	1.6418	134.8	0.662	6.82	1/888	1/7086
INDEL	Breast	ABCC3_M1027Afs*33	HLA-C16:01	YARHSPSL	0.9905	0.97	0.3542	212.3	0.6965	7.65	1/888	1/7086
INDEL	Breast	ABCC3_M1027Afs*33	HLA-A30:01	RYARHSPSL	0.825	0.9469	1.3988	91.6	0.4599	7.65	1/888	1/7086
INDEL	Breast	ABCC3_M1027Afs*33	HLA-C06:02	TRYARHSPSL	0.9665	0.9915	0.6837	206.1	0.0745	7.65	1/888	1/7086
INDEL	Breast	RGS9_R4Kfs*19	HLA-A30:01	TGRGWHFSK	0.9928	0.8338	0.433	27.5	0.1249	1.73	1/888	1/7086
INDEL	Breast	RGS9_R4Kfs*19	HLA-A30:01	STGRGWHFSK	0.9875	0.7695	0.6929	25.7	0.1128	1.73	1/888	1/7086
INDEL	Breast	RGS9_R4Kfs*19	HLA-A30:01	RGWHFSKRLK	0.9897	0.7227	0.5419	58.6	0.3	1.73	1/888	1/7086
INDEL	Breast	TMLHE_T126Ifs*2	HLA-C16:01	FTWPDGHVI	0.9524	0.9709	0.0465	40.9	0.1237	10.67	1/888	1/7086
INDEL	Breast	MIA3_Y1569Sfs*43	HLA-C12:03	SGHLKTRSL	0.924	0.9768	0.7376	272.5	1.0153	54.76	1/888	1/7086
INDEL	Breast	MIA3_Y1569Sfs*43	HLA-B39:01	MKTGSKLVL	0.997	0.9697	0.6674	61.4	0.0683	54.76	1/888	1/7086
INDEL	Breast	PIK3CA_P447_L455del	HLA-A02:01	ALNLWLNPI	0.9812	0.5601	0.4263	25.7	0.351	15.3	1/888	1/7086
INDEL	Breast	WDFY3_H1680Tfs*18	HLA-C07:02	MFMEEHLTF	0.9645	0.948	0.0121	87.2	0.0468	5.22	1/888	1/7086
INDEL	Breast	TUBD1_F224Lfs*33	HLA-B27:05	KQISLVISI	0.9956	0.6762	0.5454	437.8	1.1263	83.16	1/888	1/7086
INDEL	Breast	TUBD1_F224Lfs*33	HLA-A02:01	KSSHISWEV	0.9135	0.6573	0.0948	130.4	1.2556	83.16	2/888	2/7086
INDEL	Breast	TUBD1_F224Lfs*33	HLA-A02:01	KSSHISWEV	0.9135	0.6573	0.0948	130.4	1.2556	83.16	2/888	2/7086
INDEL	Breast	TUBD1_F224Lfs*33	HLA-A02:01	KLMNIKQISL	0.9949	0.6517	0.0383	22.8	0.3131	83.16	2/888	2/7086
INDEL	Breast	TUBD1_F224Lfs*33	HLA-A02:01	KLMNIKQISL	0.9949	0.6517	0.0383	22.8	0.3131	83.16	2/888	2/7086
INDEL	Breast	TUBD1_F224Lfs*33	HLA-A02:01	KLMNIKQISLV	0.9983	0.6311	0.2868	24.1	0.3301	83.16	2/888	2/7086
INDEL	Breast	TUBD1_F224Lfs*33	HLA-A02:01	KLMNIKQISLV	0.9983	0.6311	0.2868	24.1	0.3301	83.16	2/888	2/7086
INDEL	Breast	SMEK2_D446Ifs*18	HLA-C12:03	MGLLRTLII	0.9032	0.9896	0.4491	294.1	1.0731	34.19	1/888	1/7086
INDEL	Breast	PROS1_E390Vfs*6	HLA-C12:03	MVSVEVLAL	0.997	0.9728	0.6572	100.8	0.4523	3.77	1/888	1/7086
INDEL	Breast	TUBB_D74Afs*54	HLA-C08:02	SLDQTTLYL	0.9995	0.8439	0.0465	95.6	0.0109	626.89	1/888	1/7086
INDEL	Breast	TUBB_D74Afs*54	HLA-C12:03	MARSLDQTTL	0.9939	0.9891	0.7616	362.8	1.2499	626.89	1/888	1/7086
INDEL	Breast	PRDX1_L119Ffs*4	HLA-B15:01	TIAQDYGVF	0.989	0.9654	0.8562	91.5	0.4861	870.71	1/888	1/7086
INDEL	Breast	PRDX1_L119Ffs*4	HLA-B15:01	RTIAQDYGVF	0.9985	0.9605	0.721	39	0.1909	870.71	1/888	1/7086
INDEL	Breast	SLC30A1_V252Pfs*26	HLA-A02:01	SLLLFLERL	0.9191	0.607	0.0601	38.3	0.4996	35.4	1/888	1/7086
INDEL	Breast	SLC30A1_V252Pfs*26	HLA-B15:01	FLHPWRCLGF	0.9985	0.9788	0.4491	151.1	0.7391	35.4	1/888	1/7086
INDEL	Breast	TTC21A_S1233Pfs*49	HLA-B15:01	RMQSPTTNW	0.8852	0.9031	0.1448	371.4	1.4243	3.36	1/888	1/7086
INDEL	Breast	TTC21A_S1233Pfs*49	HLA-C03:03	TVITPTLPL	0.9986	0.9864	0.1448	18.2	0.0764	3.36	1/888	1/7086
INDEL	Breast	ALMS1_H879Qfs*5	HLA-C03:02	QTLPNSQIL	0.9813	0.9456	1.0496	282.8	0.9903	11.52	1/888	1/7086
INDEL	Breast	GFM1_G545Vfs*8	HLA-C03:02	KQSGVQASM	0.7893	0.9608	1.1532	328.2	1.106	27.85	1/888	1/7086
INDEL	Breast	TMEM50A_E18Kfs*23	HLA-B57:01	KSAILLLPL	0.9796	0.9469	0.9889	186.2	0.3629	126.56	1/888	1/7086
INDEL	Breast	TMEM50A_E18Kfs*23	HLA-B57:01	KSAILLLPLL	0.996	0.9606	1.0863	122	0.265	126.56	1/888	1/7086
INDEL	Breast	ARID1A_L1591Cfs*21	HLA-B57:01	RTAPLLASL	0.9963	0.9626	0.2778	107.8	0.2428	91.71	1/888	1/7086
INDEL	Breast	ARID1A_L1591Cfs*21	HLA-B57:01	SSPAPCPGQW	0.9987	0.9563	0.4134	90.5	0.2171	91.71	1/888	1/7086
INDEL	Breast	ARID1A_L1591Cfs*21	HLA-B57:01	VSSPAPCPGQW	0.9998	0.9141	0.3235	79.3	0.1978	91.71	1/888	1/7086
INDEL	Breast	TINAGL1_P101Rfs*46	HLA-B57:01	VTKNHAWW	0.9993	0.9917	0.4134	277.9	0.4807	4.72	1/888	1/7086
INDEL	Breast	TINAGL1_P101Rfs*46	HLA-B44:03	MEVVSIQSW	0.9997	0.9471	0.033	7.5	0.007	4.72	1/888	1/7086
INDEL	Breast	TINAGL1_P101Rfs*46	HLA-B57:01	GSVTKNHAW	0.9993	0.9935	0.0539	42.9	0.1185	4.72	1/888	1/7086
INDEL	Breast	TINAGL1_P101Rfs*46	HLA-B57:01	SVTKNHAWW	0.9929	0.9912	0.184	121.2	0.2635	4.72	1/888	1/7086
INDEL	Breast	TINAGL1_P101Rfs*46	HLA-B57:01	SGSVTKNHAW	0.9996	0.9914	0.4153	101.9	0.2346	4.72	1/888	1/7086
INDEL	Breast	TINAGL1_P101Rfs*46	HLA-B57:01	GSVTKNHAWW	0.9998	0.9913	0.1898	65.9	0.172	4.72	1/888	1/7086
INDEL	Breast	TINAGL1_P101Rfs*46	HLA-B57:01	GSGSVTKNHAW	1	0.9881	0.3386	348.8	0.5704	4.72	1/888	1/7086
INDEL	Breast	NBPF9_K816Nfs*52	HLA-B44:03	EENMLAFLL	0.9852	0.9641	0.6429	46.2	0.0531	2.17	1/888	1/7086
INDEL	Breast	NBPF9_K816Nfs*52	HLA-B44:03	EENMLAFLLTW	0.9993	0.9718	0.6488	22.9	0.0173	2.17	1/888	1/7086
INDEL	Breast	KCNJ10_P102Rfs*96	HLA-B57:01	TSVRNVHW	0.9998	0.9598	0.4048	435	0.6739	3.37	1/888	1/7086
INDEL	Breast	KCNJ10_P102Rfs*96	HLA-B57:01	SSSQVPSW	0.9998	0.9649	0.5296	213.7	0.398	3.37	1/888	1/7086
INDEL	Breast	KCNJ10_P102Rfs*96	HLA-B57:01	VSASMQLW	0.9999	0.9878	0.3769	44.3	0.1223	3.37	1/888	1/7086
INDEL	Breast	KCNJ10_P102Rfs*96	HLA-B57:01	ATSVRNVHW	0.9995	0.9786	0.0177	26.7	0.0685	3.37	1/888	1/7086
INDEL	Breast	KCNJ10_P102Rfs*96	HLA-B57:01	PSWCSPPSW	0.8956	0.9874	0.5671	95.2	0.2246	3.37	1/888	1/7086
INDEL	Breast	KCNJ10_P102Rfs*96	HLA-B57:01	KSSSQVPSW	0.9996	0.9688	0.0299	6.3	0.0084	3.37	1/888	1/7086
INDEL	Breast	KCNJ10_P102Rfs*96	HLA-B57:01	FVSASMQLW	0.9907	0.9853	0.361	34	0.0893	3.37	1/888	1/7086
INDEL	Breast	KCNJ10_P102Rfs*96	HLA-B57:01	SATSVRNVHW	0.9998	0.9681	0.1055	32.3	0.0825	3.37	1/888	1/7086
INDEL	Breast	KCNJ10_P102Rfs*96	HLA-B57:01	LPSWCSPPSW	0.9817	0.9953	0.7554	20.2	0.0402	3.37	1/888	1/7086
INDEL	Breast	KCNJ10_P102Rfs*96	HLA-B57:01	WKSSSQVPSW	0.9963	0.9674	1.7204	39.9	0.1093	3.37	1/888	1/7086
INDEL	Breast	KCNJ10_P102Rfs*96	HLA-B57:01	ASATSVRNVHW	0.9999	0.9845	0.0583	116.3	0.2553	3.37	1/888	1/7086
INDEL	Breast	KCNJ10_P102Rfs*96	HLA-B57:01	LLPSWCSPPSW	0.9976	0.9948	0.5181	60.9	0.1607	3.37	1/888	1/7086
INDEL	Breast	KCNJ10_P102Rfs*96	HLA-B57:01	SWKSSSQVPSW	0.9994	0.9656	1.314	206.9	0.3897	3.37	1/888	1/7086
INDEL	Breast	KCNJ10_P102Rfs*96	HLA-B57:01	RPFVSASMQLW	0.997	0.9749	0.1272	50	0.1365	3.37	1/888	1/7086
INDEL	Breast	AGT_F430Lfs*25	HLA-B57:01	NSLTSLRSW	0.9996	0.985	0.1963	24.1	0.0579	1.49	1/888	2/7086
INDEL	Breast	AGT_F430Lfs*25	HLA-B57:01	PNSLTSLRSW	0.9974	0.9542	1.3273	188.4	0.3659	1.49	1/888	2/7086
INDEL	Breast	AGT_F430Lfs*25	HLA-B57:01	LPNSLTSLRSW	0.9996	0.982	0.3941	40.3	0.1107	1.49	1/888	2/7086
INDEL	Breast	TARBP1_A1346Cfs*26	HLA-B44:03	QEHFFFCNI	0.9589	0.9402	0.1025	143.6	0.1665	10.41	1/888	1/7086
INDEL	Breast	KIF5C_K223Nfs*43	HLA-B57:01	KNSVGNFIW	0.9973	0.9549	0.241	192.3	0.3711	1.57	1/888	1/7086
INDEL	Breast	KIF5C_K223Nfs*43	HLA-B57:01	VGNFIWLIW	0.9952	0.97	0.5741	175.9	0.3484	1.57	1/888	1/7086
INDEL	Breast	KIF5C_K223Nfs*43	HLA-B57:01	ISISLCLLL	0.9227	0.8347	0.7833	461.9	0.7038	1.57	1/888	1/7086
INDEL	Breast	KIF5C_K223Nfs*43	HLA-B57:01	SVGNFIWLIW	0.9989	0.9794	0.5999	217.8	0.4035	1.57	1/888	1/7086
INDEL	Breast	KIF5C_K223Nfs*43	HLA-B57:01	RSAKLVPREL	0.9916	0.9845	0.6295	379.7	0.6074	1.57	1/888	1/7086
INDEL	Breast	KIF5C_K223Nfs*43	HLA-B44:03	RELFLTKLKI	0.9196	0.9146	1.063	375.9	0.357	1.57	1/888	1/7086
INDEL	Breast	KIF5C_K223Nfs*43	HLA-B44:03	TEKNSVGNFIW	0.9998	0.9361	0.0452	334.1	0.3276	1.57	1/888	1/7086
INDEL	Breast	KIF5C_K223Nfs*43	HLA-B57:01	NSVGNFIWLIW	0.9995	0.9711	0.4548	351.7	0.574	1.57	1/888	1/7086
INDEL	Breast	KIF5C_K223Nfs*43	HLA-B57:01	RSAKLVPRELF	1	0.9852	0.2996	128.7	0.2755	1.57	1/888	1/7086
INDEL	Breast	TTC21B_A903Qfs*54	HLA-B57:01	LSFIERLW	0.9999	0.9364	0.2727	35.2	0.0937	4.9	1/888	1/7086
INDEL	Breast	TTC21B_A903Qfs*54	HLA-B57:01	QLSFIERLW	0.9942	0.9221	0.2464	170	0.3397	4.9	1/888	1/7086
INDEL	Breast	TTC21B_A903Qfs*54	HLA-B57:01	LSFIERLWF	0.9982	0.9048	0.184	161.3	0.3263	4.9	1/888	1/7086
INDEL	Breast	TTC21B_A903Qfs*54	HLA-B57:01	QIIRLCWNW	0.9943	0.9938	0.4061	380.7	0.6086	4.9	1/888	1/7086
INDEL	Breast	TTC21B_A903Qfs*54	HLA-B57:01	KQLSFIERLW	0.9989	0.9674	0.0962	75.5	0.1909	4.9	1/888	1/7086
INDEL	Breast	TTC21B_A903Qfs*54	HLA-B57:01	TAKQIIRLCW	0.9995	0.9739	0.2054	158.1	0.3211	4.9	1/888	1/7086
INDEL	Breast	TTC21B_A903Qfs*54	HLA-B57:01	KQIIRLCWNW	0.9943	0.991	0.6233	274.1	0.4764	4.9	1/888	1/7086
INDEL	Breast	TTC21B_A903Qfs*54	HLA-B57:01	LCWNWHDYTW	0.9996	0.9929	0.5245	147.3	0.3032	4.9	1/888	1/7086
INDEL	Breast	TTC21B_A903Qfs*54	HLA-C06:02	FRVTRITKLL	0.8956	0.9813	1.1369	109.4	0.0379	4.9	1/888	1/7086
INDEL	Breast	TTC21B_A903Qfs*54	HLA-B57:01	KQLSFIERLWF	0.9954	0.9142	0.9455	426.3	0.664	4.9	1/888	1/7086
INDEL	Breast	TTC21B_A903Qfs*54	HLA-B57:01	FTAKQIIRLCW	0.9999	0.9746	0.1182	354.4	0.5772	4.9	1/888	1/7086
INDEL	Breast	TTC21B_A903Qfs*54	HLA-A24:02	RLCWNWHDYTW	0.9953	0.6557	1.7953	446.3	0.6113	4.9	1/888	1/7086
INDEL	Breast	SMARCC1_L702Ffs*34	HLA-B57:01	MSTVAFFGI	0.8051	0.9726	1.8266	317.7	0.5309	7.2	1/888	1/7086
INDEL	Breast	CENPC_S868Lfs*5	HLA-B57:01	KTLDTPFFL	0.9914	0.9668	0.0523	214.3	0.3987	6.39	1/888	1/7086
INDEL	Breast	CENPC_S868Lfs*5	HLA-B57:01	KTLDTPFFLL	0.999	0.9523	0.1227	236.8	0.43	6.39	1/888	1/7086
INDEL	Breast	NNT_F215Lfs*17	HLA-B44:03	LEKFLQLRF	0.9821	0.96	0.4409	300.7	0.3014	27.97	1/888	1/7086
INDEL	Breast	CHD1_E1321Rfs*17	HLA-B57:01	LAKKRSSFW	0.9972	0.9861	0.4196	49.6	0.1354	15.81	1/888	1/7086
INDEL	Breast	CHD1_E1321Rfs*17	HLA-B57:01	RSSFWCGKF	0.9889	0.9958	0.1656	76.8	0.1934	15.81	1/888	1/7086
INDEL	Breast	CHD1_E1321Rfs*17	HLA-B57:01	RDLAKKRSSFW	0.9998	0.9704	0.834	349.8	0.5716	15.81	1/888	1/7086
INDEL	Breast	RBM27_N851Kfs*29	HLA-B57:01	RAWREDLTI	0.9926	0.9913	0.3137	230.7	0.4218	8.32	1/888	1/7086
INDEL	Breast	RUFY1_L132Qfs*31	HLA-B57:01	CSDGALPQTW	0.9985	0.9783	0.2227	84.8	0.2075	18.58	1/888	1/7086
INDEL	Breast	RNF144B_N16Ifs*27	HLA-B57:01	SACVSSLW	0.9996	0.9789	0.5886	290.9	0.4953	31.74	1/888	1/7086
INDEL	Breast	RNF144B_N16Ifs*27	HLA-B44:03	AEIPLLETW	0.9998	0.9849	0.0031	8.8	0.0076	31.74	1/888	1/7086
INDEL	Breast	RNF144B_N16Ifs*27	HLA-B57:01	NSACVSSLW	0.9974	0.9765	0.1149	23.1	0.0549	31.74	1/888	1/7086
INDEL	Breast	RNF144B_N16Ifs*27	HLA-B57:01	TAEIPLLETW	0.9994	0.989	0.1227	49.8	0.1359	31.74	1/888	1/7086
INDEL	Breast	RNF144B_N16Ifs*27	HLA-B44:03	AEIPLLETWL	0.9888	0.97	0.3925	60.7	0.0674	31.74	1/888	1/7086
INDEL	Breast	RNF144B_N16Ifs*27	HLA-B57:01	ANSACVSSLW	0.9974	0.9674	0.5077	20.2	0.0403	31.74	1/888	1/7086
INDEL	Breast	RNF144B_N16Ifs*27	HLA-B57:01	MTAEIPLLETW	1	0.9825	0.0282	16	0.0277	31.74	1/888	1/7086
INDEL	Breast	RNF144B_N16Ifs*27	HLA-B44:03	MTAEIPLLETW	0.9964	0.9793	1.7671	82.7	0.0976	31.74	1/888	1/7086
INDEL	Breast	RNF144B_N16Ifs*27	HLA-B57:01	LANSACVSSLW	0.9998	0.9772	0.3685	37.6	0.1017	31.74	1/888	1/7086
INDEL	Breast	VWA7_G389Wfs*5	HLA-B44:03	NEIHALGGW	0.9996	0.9519	0.0734	24.4	0.0189	4.45	1/888	1/7086
INDEL	Breast	ECHDC1_G101Afs*17	HLA-B57:01	KASLSVGQKI	0.995	0.8714	1.9129	311.7	0.5229	3.38	1/888	1/7086
INDEL	Breast	IQCE_K539Rfs*25	HLA-B57:01	RLFWMRRLW	0.9924	0.9954	0.1807	45.2	0.125	12.88	1/888	1/7086
INDEL	Breast	IQCE_K539Rfs*25	HLA-A24:02	FWMRRLWCF	0.9815	0.7179	0.4865	13.4	0.0195	12.88	1/888	1/7086
INDEL	Breast	THAP5_F275Lfs*37	HLA-B44:03	KESVIAILY	0.9986	0.839	0.0096	22.8	0.0172	36.35	1/888	1/7086
INDEL	Breast	THAP5_F275Lfs*37	HLA-B44:03	KESVIAILYL	0.9611	0.911	0.5512	305.8	0.3056	36.35	1/888	1/7086
INDEL	Breast	SND1_F251Sfs*39	HLA-B44:03	REMFRSFW	0.997	0.9628	0.793	88.2	0.1034	102.49	1/888	1/7086
INDEL	Breast	SND1_F251Sfs*39	HLA-B57:01	RTFWVPSF	0.9982	0.9955	0.6117	134.6	0.2845	102.49	1/888	1/7086
INDEL	Breast	SND1_F251Sfs*39	HLA-B57:01	RAATTRTFW	0.9996	0.9895	0.0045	8.9	0.0101	102.49	1/888	1/7086
INDEL	Breast	SND1_F251Sfs*39	HLA-B57:01	RTFWVPSFI	0.9943	0.9937	0.276	94.4	0.2233	102.49	1/888	1/7086
INDEL	Breast	SND1_F251Sfs*39	HLA-B57:01	WRAATTRTFW	0.9928	0.993	1.6663	32.3	0.0824	102.49	1/888	1/7086
INDEL	Breast	SND1_F251Sfs*39	HLA-A24:02	SFWRAATTRTF	0.9979	0.7153	0.8492	219.6	0.3875	102.49	1/888	1/7086
INDEL	Breast	SND1_F251Sfs*39	HLA-B57:01	RTFWVPSFIQM	0.9996	0.9886	0.2793	382.3	0.6107	102.49	1/888	1/7086
INDEL	Breast	PCM1_M410Wfs*39	HLA-B44:03	LENFIHFEI	0.948	0.9414	0.6635	252.5	0.26	28.76	1/888	1/7086
INDEL	Breast	PCM1_M410Wfs*39	HLA-B57:01	RVLQEKKQKW	0.9991	0.9899	0.0084	111.4	0.2476	28.76	1/888	1/7086
INDEL	Breast	PCM1_M410Wfs*39	HLA-B44:03	REVLQLPLLL	0.9387	0.9513	0.5165	326.4	0.3218	28.76	1/888	1/7086
INDEL	Breast	LRP12_C451Afs*37	HLA-B44:03	QEISIVKTI	0.9983	0.7977	0.033	49.9	0.0563	1.78	1/888	1/7086
INDEL	Breast	LRP12_C451Afs*37	HLA-B44:03	QEISIVKTIV	0.9302	0.9112	0.3124	335.3	0.3286	1.78	1/888	1/7086
INDEL	Breast	GOLGA1_T518Pfs*35	HLA-B57:01	KSRRFSSW	0.9991	0.967	0.5279	59.2	0.1569	16.88	1/888	1/7086
INDEL	Breast	GOLGA1_T518Pfs*35	HLA-B57:01	YTSCRPSW	0.9995	0.9754	0.6212	320.5	0.5346	16.88	1/888	1/7086
INDEL	Breast	GOLGA1_T518Pfs*35	HLA-A24:02	RYTSCRPSW	0.9702	0.5205	0.1182	182.1	0.3376	16.88	1/888	1/7086
INDEL	Breast	GOLGA1_T518Pfs*35	HLA-B57:01	FSRKSRRFSSW	0.9988	0.9802	0.4456	85.3	0.2084	16.88	1/888	1/7086
INDEL	Breast	GOLGA1_T518Pfs*35	HLA-B44:03	SEVTTLPCCRY	0.9997	0.8018	0.23	194.4	0.2095	16.88	1/888	1/7086
INDEL	Breast	GATA3_W328Efs*23	HLA-B57:01	TTLEEECQW	0.9865	0.9799	0.2778	82.9	0.2042	1289.49	1/888	1/7086
INDEL	Breast	GATA3_W328Efs*23	HLA-B57:01	TTTLEEECQW	0.9967	0.9755	0.5601	266.3	0.4673	1289.49	1/888	1/7086
INDEL	Breast	GATA3_W328Efs*23	HLA-A24:02	QWGPCLQCLW	0.9924	0.7078	1.12	365.8	0.5448	1289.49	1/888	1/7086
INDEL	Breast	SMPD1_F333Sfs*52	HLA-B44:03	SELGGSMLF	0.9982	0.9429	0.2868	20.2	0.014	60.75	1/888	1/7086
INDEL	Breast	APLP2_G625Dfs*11	HLA-A24:02	LYHPMKKDLEW	0.999	0.6278	0.3529	406.6	0.5785	243.24	1/888	1/7086
INDEL	Breast	PLEKHA5_V152Ffs*33	HLA-B57:01	RTSRASKKF	0.9893	0.9814	0.5312	89.8	0.216	2.62	1/888	2/7086
INDEL	Breast	TFCP2_P452Lfs*23	HLA-B57:01	ISLARSARF	0.9985	0.9507	0.296	88.5	0.2138	34.07	1/888	1/7086
INDEL	Breast	TFCP2_P452Lfs*23	HLA-B44:03	QEFMCSSVM	0.9879	0.9839	0.7514	83	0.0979	34.07	1/888	1/7086
INDEL	Breast	PIBF1_N549Mfs*26	HLA-B44:03	AEIEMKMRL	0.999	0.9384	0.0452	51.9	0.0579	11.26	1/888	1/7086
INDEL	Breast	PIBF1_N549Mfs*26	HLA-C06:02	FFFPTAMVL	0.8191	0.9942	0.0383	178.3	0.0656	11.26	1/888	1/7086
INDEL	Breast	PIBF1_N549Mfs*26	HLA-B44:03	IEMKMRLKGF	0.8976	0.7908	1.0445	85.4	0.1003	11.26	1/888	1/7086
INDEL	Breast	LRP10_L480Pfs*7	HLA-B44:03	QEYSIFAPPL	0.9335	0.9648	1.4289	120.8	0.14	132.28	1/888	1/7086
INDEL	Breast	YLPM1_P254Lfs*35	HLA-B57:01	RQLSSKSLW	0.9733	0.9113	0.0344	147.1	0.3029	12.54	1/888	3/7086
INDEL	Breast	YLPM1_P254Lfs*35	HLA-C06:02	WRVGPKTRVL	0.9396	0.9914	0.8515	498.4	0.1627	12.54	1/888	4/7086
INDEL	Breast	SMEK1_K753Rfs*52	HLA-B57:01	LQREASWVW	0.9602	0.9957	0.1821	130.2	0.2779	45.51	1/888	1/7086
INDEL	Breast	SMEK1_K753Rfs*52	HLA-B57:01	LLQREASWVW	0.9986	0.9956	0.6467	284.3	0.488	45.51	1/888	1/7086
INDEL	Breast	RNF111_P524Qfs*46	HLA-B57:01	IMNSRHCQW	0.9962	0.9715	0.2009	227.8	0.4177	14.63	1/888	1/7086
INDEL	Breast	RNF111_P524Qfs*46	HLA-B57:01	AIMNSRHCQW	0.9994	0.9565	0.1255	288.6	0.4927	14.63	1/888	1/7086
INDEL	Breast	RNF111_S947Ffs*2	HLA-B44:03	EEKCTICLF	0.9927	0.8904	0.5941	88.2	0.1035	14.63	1/888	1/7086
INDEL	Breast	RNF111_S947Ffs*2	HLA-B44:03	TEEKCTICLF	0.9942	0.8964	0.8186	202.8	0.2173	14.63	1/888	1/7086
INDEL	Breast	SIN3A_N368Tfs*22	HLA-A24:02	SYQMPTAPCF	0.9941	0.6348	0.2335	19.6	0.0368	15.06	1/888	1/7086
INDEL	Breast	PDPK1_E90Kfs*30	HLA-B57:01	KALFPRLSW	0.9996	0.9963	0.0073	7.2	0.009	11.75	1/888	1/7086
INDEL	Breast	PDPK1_E90Kfs*30	HLA-B57:01	GKALFPRLSW	0.9971	0.9907	0.8422	30.1	0.0767	11.75	1/888	1/7086
INDEL	Breast	PDPK1_E90Kfs*30	HLA-B57:01	LGKALFPRLSW	0.9999	0.9927	0.6674	87.9	0.2127	11.75	1/888	1/7086
INDEL	Breast	PDPK1_E90Kfs*30	HLA-A24:02	LFPRLSWLENW	0.9977	0.781	1.6177	398.3	0.5718	11.75	1/888	1/7086
INDEL	Breast	RNF43_G659Vfs*41	HLA-A24:02	FFPITPPVW	0.9958	0.769	0.0995	100.6	0.213	12.15	1/888	18/7086
INDEL	Breast	RNF43_G659Vfs*41	HLA-A24:02	ITPPVWHIL	0.9346	0.7932	0.3698	387.5	0.5631	12.15	1/888	18/7086
INDEL	Breast	RNF43_G659Vfs*41	HLA-A24:02	RFFPITPPVW	0.9954	0.859	0.0412	111.4	0.23	12.15	1/888	18/7086
INDEL	Breast	RNF43_G659Vfs*41	HLA-B57:01	RFFPITPPVW	0.9949	0.9968	0.0745	346.2	0.5673	12.15	1/888	3/7086
INDEL	Breast	HEATR6_E723Kfs*21	HLA-B57:01	SFMEQSFW	0.9963	0.9802	1.2561	408.6	0.6433	11.02	1/888	1/7086
INDEL	Breast	HEATR6_E723Kfs*21	HLA-B57:01	FSFMEQSFW	0.9993	0.9768	0.1302	8.5	0.0098	11.02	1/888	1/7086
INDEL	Breast	HEATR6_E723Kfs*21	HLA-B44:03	MEQSFWKNW	0.9995	0.9633	0.2319	6.2	0.0063	11.02	1/888	1/7086
INDEL	Breast	HEATR6_E723Kfs*21	HLA-B57:01	HPFSFMEQSFW	0.9986	0.9101	0.2335	26.1	0.066	11.02	1/888	1/7086
INDEL	Breast	KMT2B_P174Qfs*20	HLA-B57:01	GVRKAQNGW	0.9904	0.9743	0.2793	188.8	0.3664	17.02	1/888	3/7086
INDEL	Breast	TEAD2_E3Nfs*66	HLA-B57:01	LSRASRRPW	0.9947	0.983	0.4951	24.2	0.0584	48.66	1/888	1/7086
INDEL	Breast	TEAD2_E3Nfs*66	HLA-B57:01	MGNPGLGPPW	0.9991	0.9925	0.5181	134.9	0.285	48.66	1/888	1/7086
INDEL	Breast	TEAD2_E3Nfs*66	HLA-B57:01	TLSRASRRPW	0.9784	0.9798	1.4064	172.9	0.3439	48.66	1/888	1/7086
INDEL	Breast	TEAD2_E3Nfs*66	HLA-B57:01	QTLSRASRRPW	0.9992	0.9842	0.4033	99.2	0.2306	48.66	1/888	1/7086
INDEL	Breast	PLCB4_I229Nfs*7	HLA-B44:03	IEDLFKKNQW	0.9979	0.967	0.2227	345.3	0.3359	7.36	1/888	1/7086
INDEL	Breast	TPST2_N333Qfs*6	HLA-B57:01	YANPPQLW	0.9998	0.9723	0.1448	370	0.5954	7.86	1/888	1/7086
INDEL	Breast	TPST2_N333Qfs*6	HLA-A24:02	PYANPPQLW	0.9948	0.6744	0.1098	238	0.4105	7.86	1/888	1/7086
INDEL	Breast	ASCC2_F124Sfs*29	HLA-B57:01	RSLHFPFCV	0.905	0.9974	0.4347	430.2	0.6684	47.31	1/888	1/7086
INDEL	Breast	ASCC2_F124Sfs*29	HLA-B57:01	RSLHFPFCVW	0.9999	0.997	0.0177	7	0.0089	47.31	1/888	1/7086
INDEL	Breast	GGA1_R452Gfs*64	HLA-A24:02	HWPASLCPW	0.9692	0.6577	0.8271	269.6	0.4491	16.55	1/888	1/7086
INDEL	Breast	GGA1_R452Gfs*64	HLA-B57:01	SSPYQPSSHW	0.9998	0.9331	0.3302	42	0.1158	16.55	1/888	1/7086
INDEL	Breast	GGA1_R452Gfs*64	HLA-B57:01	RSSPYQPSSHW	1	0.9104	0.0282	14.7	0.0231	16.55	1/888	1/7086
INDEL	Breast	GGA1_R452Gfs*64	HLA-B57:01	SSHWPASLCPW	0.9999	0.9792	0.5924	89.3	0.2152	16.55	1/888	1/7086
INDEL	Breast	KLHDC7B_I362Hfs*226	HLA-B57:01	RAALCHRW	0.9995	0.993	0.1734	97.1	0.2274	3.59	1/888	1/7086
INDEL	Breast	KLHDC7B_I362Hfs*226	HLA-A24:02	LFLAGGHPW	0.986	0.6995	0.2396	130.5	0.2583	3.59	1/888	1/7086
INDEL	Breast	KLHDC7B_I362Hfs*226	HLA-C06:02	WRMPVQHGVL	0.9399	0.9911	0.6818	254.7	0.0891	3.59	1/888	1/7086
INDEL	Breast	RAI2_L224Wfs*13	HLA-B57:01	FSSPLSPW	0.9998	0.9899	0.7356	170.5	0.3405	2.58	1/888	1/7086
INDEL	Breast	RAI2_L224Wfs*13	HLA-B57:01	LSPWSHQPPSW	0.9999	0.9906	0.356	294.2	0.4988	2.58	1/888	1/7086
INDEL	Breast	ITIH6_S408Qfs*25	HLA-B57:01	QGIPFQLGLW	0.9994	0.9939	0.4113	45.1	0.1248	16.22	1/888	1/7086
INDEL	Breast	PJA1_F275Lfs*59	HLA-B57:01	TMRATRMAW	0.9718	0.9939	0.2089	255.3	0.4539	47.95	1/888	1/7086
INDEL	Breast	PJA1_F275Lfs*59	HLA-B44:03	GEARVQVAI	0.9837	0.9482	0.0412	345.1	0.3357	47.95	1/888	1/7086
INDEL	Breast	PJA1_F275Lfs*59	HLA-B57:01	MTMRATRMAW	0.9998	0.9948	0.0412	5.1	0.0074	47.95	1/888	1/7086
INDEL	Breast	RUNX1_D96Gfs*11	HLA-A02:01	ALGGMFQMA	0.9495	0.5562	0.6973	204.6	1.6702	60.19	1/888	1/7086
INDEL	Breast	ARRDC3_P149_E155del	HLA-C07:02	HRPWLLFTV	0.9306	0.9609	0.1317	258.4	0.1695	79.23	1/888	1/7086
INDEL	Breast	RAB11FIP1_P1035Tfs*30	HLA-C07:02	FRLQATPGI	0.8917	0.9364	0.9152	132.1	0.0712	37.82	1/888	1/7086
INDEL	Breast	DYRK1A_T667Hfs*36	HLA-C03:04	TSSSHLPPL	0.9991	0.9854	0.4698	73.1	0.2912	23.03	1/888	1/7086
INDEL	Breast	DYRK1A_T667Hfs*36	HLA-B07:02	RPTRIAQWL	0.9984	0.7781	0.1212	28.8	0.1048	23.03	1/888	1/7086
INDEL	Breast	DYRK1A_T667Hfs*36	HLA-C07:02	TRIAQWLLI	0.9253	0.9681	0.555	265.2	0.1737	23.03	1/888	1/7086
INDEL	Breast	DYRK1A_T667Hfs*36	HLA-B07:02	RPTRIAQWLL	0.9978	0.7734	0.3822	29.1	0.1057	23.03	1/888	1/7086
INDEL	Breast	DYRK1A_T667Hfs*36	HLA-A02:01	AQWLLIPWTL	0.8062	0.6156	1.9543	180.5	1.5443	23.03	2/888	2/7086
INDEL	Breast	DYRK1A_T667Hfs*36	HLA-A02:01	AQWLLIPWTL	0.8062	0.6156	1.9543	180.5	1.5443	23.03	2/888	2/7086
INDEL	Breast	DYRK1A_T667Hfs*36	HLA-A02:01	TLDRMELWTL	0.8737	0.8413	1.1763	152.6	1.398	23.03	2/888	2/7086
INDEL	Breast	DYRK1A_T667Hfs*36	HLA-A02:01	TLDRMELWTL	0.8737	0.8413	1.1763	152.6	1.398	23.03	2/888	2/7086
INDEL	Breast	HOXA1_G152Afs*57	HLA-B08:01	YAGARWARL	0.9936	0.7627	1.5432	102.4	0.183	1.55	1/888	1/7086
INDEL	Breast	HOXA1_G152Afs*57	HLA-C07:02	ARWARLNTF	0.9305	0.9875	0.0267	106	0.0576	1.55	1/888	1/7086
INDEL	Breast	HOXA1_G152Afs*57	HLA-C07:01	ARWARLNTF	0.999	0.9307	0.0214	263.7	0.0958	1.55	1/888	1/7086
INDEL	Breast	HOXA1_G152Afs*57	HLA-C07:01	TRAWPWLRI	0.9968	0.9268	0.3386	441.6	0.1509	1.55	1/888	1/7086
INDEL	Breast	HOXA1_G152Afs*57	HLA-C07:02	LRIITPCPL	0.7964	0.972	0.8228	281.7	0.1852	1.55	1/888	1/7086
INDEL	Breast	HOXA1_G152Afs*57	HLA-C07:01	LRIITPCPL	0.9843	0.8277	0.6929	353.7	0.1263	1.55	1/888	1/7086
INDEL	Breast	HOXA1_G152Afs*57	HLA-C07:02	RRHLLQRRL	0.9044	0.9604	0.3866	316.6	0.2093	1.55	1/888	1/7086
INDEL	Breast	HOXA1_G152Afs*57	HLA-C07:01	RRHLLQRRL	0.9966	0.6723	0.2367	388.4	0.1366	1.55	1/888	1/7086
INDEL	Breast	HOXA1_G152Afs*57	HLA-B07:02	KPVAPPHRRHL	0.9996	0.6815	0.4614	177.5	0.4365	1.55	1/888	1/7086
INDEL	Breast	DENND3_N419Kfs*22	HLA-B27:05	LRWTSTPSR	0.9991	0.6332	0.5213	46.3	0.135	1.96	1/888	1/7086
INDEL	Breast	DENND3_N419Kfs*22	HLA-B27:05	LRWTSTPSRR	0.9997	0.6058	0.6191	76.5	0.2542	1.96	1/888	1/7086
INDEL	Breast	DENND3_N419Kfs*22	HLA-B27:05	ARLKLGGWTPL	1	0.7544	0.8492	69.8	0.2323	1.96	1/888	1/7086
INDEL	Breast	ZFHX3_P2058Afs*98	HLA-A02:01	ALHADGAAHL	0.8594	0.6094	0.3413	231.2	1.8005	13.47	1/888	1/7086
INDEL	Breast	ZNF462_T2306Sfs*13	HLA-B07:02	SPAPVMRAS	0.9926	0.6489	0.3753	127	0.3512	6.15	1/888	1/7086
INDEL	Breast	ZNF462_T2306Sfs*13	HLA-B07:02	SPAPVMRASS	0.9916	0.5268	0.9152	213.1	0.4906	6.15	1/888	1/7086
INDEL	Breast	MAN2A2_F291Lfs*20	HLA-B07:02	TPRSGWAVDPL	0.9999	0.5559	0.4916	13	0.0381	11.24	1/888	1/7086
INDEL	Breast	TP53_R174Sfs*73	HLA-A03:01	IVWWCPMSR	0.9122	0.5879	0.8468	68.6	0.2594	19.62	1/888	1/7086
INDEL	Breast	TP53_R174Sfs*73	HLA-C07:02	SRLRLALTV	0.942	0.9589	0.1242	338.4	0.2243	19.62	1/888	1/7086
INDEL	Breast	TP53_R174Sfs*73	HLA-C07:01	SRLRLALTV	0.9859	0.7321	0.0658	244.4	0.0892	19.62	1/888	1/7086
INDEL	Breast	TP53_R174Sfs*73	HLA-B07:02	APTMSAAQIAM	0.9992	0.5482	0.4263	120	0.3381	19.62	1/888	1/7086
INDEL	Breast	MIIP_P76Hfs*47	HLA-C12:02	MPVEGTSVM	0.534	0.993	0.0794	326.7	0.4665	5.83	1/888	1/7086
INDEL	Breast	RIF1_A1176Sfs*11	HLA-B18:01	DERKKSFNF	0.9921	0.9189	0.1855	164.9	0.1021	10.54	1/888	1/7086
INDEL	Breast	ZNF148_R317Gfs*22	HLA-B18:01	LEWTKRVLW	0.9666	0.9372	1.0366	394.3	0.2459	12.08	1/888	1/7086
INDEL	Breast	ABL1_N358Kfs*24	HLA-A03:01	KLHPQRSCCPK	0.999	0.5915	0.5601	159.2	0.5412	29.75	1/888	1/7086
INDEL	Breast	PDCD4_E411Kfs*20	HLA-C12:02	RIYNKFRTL	0.8082	0.9896	0.0875	355.8	0.4995	9.95	1/888	1/7086
INDEL	Breast	REXO2_S113Efs*11	HLA-B18:01	EEYNYIAAG	0.8018	0.808	0.7833	239.8	0.1602	6.83	1/888	1/7086
INDEL	Breast	RNF39_L396Wfs*74	HLA-B15:03	CSAPATLVL	0.9805	0.8382	0.5829	129.9	1.6764	14.3	1/888	1/7086
INDEL	Breast	RNF39_L396Wfs*74	HLA-C17:01	CSAPATLVL	0.7233	0.9661	0.0848	303.6	0.0805	14.3	1/888	1/7086
INDEL	Breast	RNF39_L396Wfs*74	HLA-C02:10	CSAPATLVL	0.7963	0.9811	0.1196	186.4	0.1005	14.3	1/888	1/7086
INDEL	Breast	RNF39_L396Wfs*74	HLA-B42:01	ATLVLRSAL	0.8923	0.8387	1.0394	219.8	0.7479	14.3	1/888	1/7086
INDEL	Breast	RNF39_L396Wfs*74	HLA-B42:01	APATLVLRSA	0.8573	0.6744	0.0631	256.1	0.8125	14.3	1/888	1/7086
INDEL	Breast	RNF39_L396Wfs*74	HLA-B42:01	APATLVLRSAL	0.9914	0.7846	0.3427	23.1	0.1104	14.3	1/888	1/7086
INDEL	Breast	SLC16A5_T60Rfs*22	HLA-B42:01	FPSILRLCS	0.9119	0.5031	1.6564	431.1	1.1171	11.59	1/888	1/7086
INDEL	Breast	SLC16A5_T60Rfs*22	HLA-B42:01	FPSILRLCST	0.9592	0.7547	1.9612	271	0.8407	11.59	1/888	1/7086
INDEL	Breast	ASXL1_G256Ffs*10	HLA-B42:01	TPFLSTPTSV	0.9301	0.8618	0.1977	116	0.4901	39.19	1/888	1/7086
INDEL	Breast	CPT1A_K76delinsIQ	HLA-C15:05	MTTMYAIQI	0.9924	0.8723	0.4769	390.1	0.2572	135.2	1/888	1/7086
INDEL	Breast	CPT1A_K76delinsIQ	HLA-C15:05	YAIQIDPSL	0.9988	0.9347	0.0154	397	0.2627	135.2	1/888	1/7086
INDEL	Breast	CPT1A_K76Pfs*76	HLA-B07:02	GPHRHHAL	0.9997	0.5021	0.5002	66.7	0.216	135.2	1/888	1/7086
INDEL	Breast	CPT1A_K76Pfs*76	HLA-C15:05	MTTMYAPSL	0.9973	0.8657	0.5399	288.7	0.1848	135.2	1/888	1/7086
INDEL	Breast	CPT1A_K76Pfs*76	HLA-C15:05	LTAWCPSPV	0.9972	0.9752	0.9595	281.7	0.1798	135.2	1/888	1/7086
INDEL	Breast	CPT1A_K76Pfs*76	HLA-B07:02	GPHRHHALL	0.9995	0.5476	0.2446	13.5	0.0399	135.2	1/888	1/7086
INDEL	Breast	CPT1A_K76Pfs*76	HLA-B07:02	SPVAQDRPLV	0.9175	0.5385	1.0891	454.6	0.7862	135.2	1/888	1/7086
INDEL	Breast	TMEM33_K129Rfs*14	HLA-B58:01	RSLTQGAQI	0.9853	0.9254	1.0978	219.4	0.8318	15.89	1/888	1/7086
INDEL	Breast	TMEM33_K129Rfs*14	HLA-B58:01	LTQGAQIVY	0.9524	0.9003	0.4096	473.4	1.3775	15.89	1/888	1/7086
INDEL	Breast	TMEM33_K129Rfs*14	HLA-C03:02	LTQGAQIVY	0.9061	0.9228	0.2446	127.1	0.5358	15.89	1/888	1/7086
INDEL	Breast	TMEM33_K129Rfs*14	HLA-B58:01	RSLTQGAQIVY	0.9946	0.9392	0.1688	226.7	0.8518	15.89	1/888	1/7086
INDEL	Breast	MAP3K1_L717Sfs*9	HLA-B44:03	GESWQLAEKY	0.9993	0.9001	0.0962	46.6	0.0534	29.42	1/888	1/7086
INDEL	Breast	CDH1_V202Cfs*7	HLA-B35:01	TPPCWCLYY	0.9724	0.879	0.6737	95.4	0.309	109.88	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-C12:03	FSHLRPPHA	0.9571	0.9602	0.557	197.1	0.8141	43.55	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-B39:01	SHLRPPHAL	0.9991	0.8962	0.0396	18.4	0.0113	43.55	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-C12:03	HALSRRLHL	0.8766	0.9892	0.4456	57.8	0.2645	43.55	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-A02:01	ALSRRLHLL	0.8947	0.6054	0.267	251.9	1.9091	43.55	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-C12:03	VGHGLGHAL	0.9257	0.9804	0.4698	141.1	0.6143	43.55	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-A02:01	GLGHALPHL	0.9872	0.7802	0.2239	37.2	0.4879	43.55	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-A30:01	HALPHLPAA	0.8589	0.9766	1.3344	173.3	0.8357	43.55	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-C12:03	HALPHLPAA	0.9938	0.991	0.1336	123.1	0.542	43.55	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-B39:01	LPHLPAAAL	0.9095	0.9898	0.0835	389.1	0.391	43.55	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-C12:03	LVASAGRPV	0.9527	0.9858	1.1117	117.9	0.5192	43.55	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-C12:03	AGRPVPSQL	0.978	0.9671	0.4548	457.6	1.4618	43.55	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-B39:01	RPVPSQLAL	0.9275	0.7857	0.8149	483.8	0.4612	43.55	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-B13:02	SQLALLPPV	0.9358	0.9819	0.4475	108.8	0.0087	43.55	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-C12:03	LLPPVLRRL	0.9623	0.9969	0.3367	422.3	1.3861	43.55	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-A02:01	RLGRLLPVL	0.979	0.7903	0.68	126.7	1.2323	43.55	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-C12:03	VLHGGRRAL	0.9437	0.9726	0.5815	407.4	1.355	43.55	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-A30:01	RALAAAHPA	0.9008	0.9271	1.156	52.9	0.2749	43.55	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-A02:01	ALAAAHPAA	0.9651	0.5045	0.3806	205.6	1.6756	43.55	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-B39:01	LAAAHPAAL	0.8496	0.9086	1.0524	274.5	0.2949	43.55	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-C12:03	LAAAHPAAL	0.9991	0.9938	0.1383	10.7	0.0283	43.55	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-A30:01	RLRAAQPQP	0.888	0.8985	1.9682	49.2	0.2575	43.55	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-C12:03	FSHLRPPHAL	0.9993	0.976	0.3057	167.5	0.7073	43.55	1/888	1/7086
INDEL	Breast	RUNX1_D305Hfs*258	HLA-B39:01	RHVGHGLGHAL	0.9991	0.93	0.2253	372.5	0.379	43.55	1/888	1/7086
INDEL	Breast	PUM1_P48Ifs*17	HLA-B42:01	QAQIRLLQL	0.9915	0.9101	0.2778	261.2	0.8223	52.96	2/888	2/7086
INDEL	Breast	PUM1_P48Ifs*17	HLA-B42:01	QAQIRLLQL	0.9915	0.9101	0.2778	261.2	0.8223	52.96	2/888	2/7086
INDEL	Breast	CEP170_Q482Lfs*22	HLA-A30:01	KMLKNLLLL	0.8844	0.7879	0.8378	461.1	1.9208	11.21	1/888	1/7086
INDEL	Breast	CEP170_Q482Lfs*22	HLA-A30:01	MLKNLLLLK	0.9933	0.721	0.3268	35.6	0.1844	11.21	1/888	1/7086
INDEL	Breast	CEP170_Q482Lfs*22	HLA-B42:01	MMTKVTRVL	0.997	0.7296	0.9253	154.6	0.6064	11.21	2/888	2/7086
INDEL	Breast	CEP170_Q482Lfs*22	HLA-B42:01	MMTKVTRVL	0.997	0.7296	0.9253	154.6	0.6064	11.21	2/888	2/7086
INDEL	Breast	CEP170_Q482Lfs*22	HLA-A30:01	MTKVTRVLI	0.9827	0.7665	0.7058	13.5	0.0425	11.21	1/888	1/7086
INDEL	Breast	CEP170_Q482Lfs*22	HLA-A30:01	KVTRVLIPL	0.99	0.8193	1.3729	151.8	0.7398	11.21	1/888	1/7086
INDEL	Breast	CEP170_Q482Lfs*22	HLA-A30:01	KMLKNLLLLK	0.9887	0.72	0.3941	33.2	0.1706	11.21	1/888	1/7086
INDEL	Breast	NOTCH3_G670Vfs*45	HLA-B42:01	LPLPAWLL	0.9838	0.9746	0.5094	90.2	0.4104	116.66	2/888	2/7086
INDEL	Breast	NOTCH3_G670Vfs*45	HLA-B42:01	LPLPAWLL	0.9838	0.9746	0.5094	90.2	0.4104	116.66	2/888	2/7086
INDEL	Breast	NOTCH3_G670Vfs*45	HLA-B42:01	LPLPLPAWL	0.6998	0.9726	0.361	20.9	0.0981	116.66	2/888	2/7086
INDEL	Breast	NOTCH3_G670Vfs*45	HLA-B42:01	LPLPLPAWL	0.6998	0.9726	0.361	20.9	0.0981	116.66	2/888	2/7086
INDEL	Breast	NOTCH3_G670Vfs*45	HLA-B42:01	LPLPAWLLA	0.6885	0.9234	0.3542	141.9	0.5709	116.66	2/888	2/7086
INDEL	Breast	NOTCH3_G670Vfs*45	HLA-B42:01	LPLPAWLLA	0.6885	0.9234	0.3542	141.9	0.5709	116.66	2/888	2/7086
INDEL	Breast	NOTCH3_G670Vfs*45	HLA-B42:01	LPAWLLAPT	0.7302	0.8683	1.2465	62.2	0.2976	116.66	2/888	2/7086
INDEL	Breast	NOTCH3_G670Vfs*45	HLA-B42:01	LPAWLLAPT	0.7302	0.8683	1.2465	62.2	0.2976	116.66	2/888	2/7086
INDEL	Breast	NOTCH3_G670Vfs*45	HLA-B42:01	LPLPLPAWLL	0.8628	0.9696	0.5128	58.5	0.2844	116.66	2/888	2/7086
INDEL	Breast	NOTCH3_G670Vfs*45	HLA-B42:01	LPLPLPAWLL	0.8628	0.9696	0.5128	58.5	0.2844	116.66	2/888	2/7086
INDEL	Breast	NOTCH3_G670Vfs*45	HLA-B42:01	LPAWLLAPTL	0.8979	0.8724	0.5002	9.8	0.0309	116.66	2/888	2/7086
INDEL	Breast	NOTCH3_G670Vfs*45	HLA-B42:01	LPAWLLAPTL	0.8979	0.8724	0.5002	9.8	0.0309	116.66	2/888	2/7086
INDEL	Breast	FOXP1_T236Sfs*60	HLA-C03:03	FGSDHDMCL	0.9958	0.9822	0.2464	194.7	0.5539	16.73	1/888	1/7086
INDEL	Breast	FOXP1_T236Sfs*60	HLA-C05:01	GSDHDMCLL	0.9997	0.9463	0.4902	357.2	0.148	16.73	1/888	1/7086
INDEL	Breast	FOXP1_T236Sfs*60	HLA-A02:01	LLLCTFQDL	0.9689	0.6049	0.6556	90.8	0.9953	16.73	1/888	1/7086
INDEL	Breast	FOXP1_T236Sfs*60	HLA-A02:01	LLCTFQDLL	0.9744	0.6024	0.4883	121	1.1961	16.73	1/888	1/7086
INDEL	Breast	FOXP1_T236Sfs*60	HLA-B15:01	YQWTALSPH	0.9926	0.8657	0.9913	130.1	0.6553	16.73	1/888	1/7086
INDEL	Breast	FOXP1_T236Sfs*60	HLA-C05:01	FGSDHDMCLL	0.9994	0.9349	1.2334	469.2	0.1829	16.73	1/888	1/7086
INDEL	Breast	FOXP1_T236Sfs*60	HLA-A02:01	LLLCTFQDLL	0.9869	0.616	1.749	79.7	0.9057	16.73	1/888	1/7086
INDEL	Breast	FOXP1_T236Sfs*60	HLA-B15:01	LLNNEPTCLY	0.9997	0.8922	0.704	112.5	0.5789	16.73	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-B07:02	VPRLPGLL	0.9998	0.6626	0.4061	36.6	0.1255	1.18	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-B07:02	RPGSASRRA	0.996	0.7161	1.0418	281.6	0.5935	1.18	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-B07:02	RAQRHKPVL	0.9853	0.5832	0.4599	90.5	0.2752	1.18	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-A33:03	LAGARWLPR	0.9747	0.8015	0.538	79.4	0.3103	1.18	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-B07:02	GARWLPRTL	0.9625	0.8922	0.251	301.1	0.6196	1.18	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-B07:02	LPRTLPTRL	0.9995	0.5436	0.0919	11.9	0.0336	1.18	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-A33:03	TLPTRLQAR	0.9241	0.5173	0.4825	185.1	0.6097	1.18	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-B58:01	LQARVLCAW	0.8998	0.9856	0.4295	63.3	0.3432	1.18	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-B07:02	HPRQLPHTF	0.9988	0.5618	0.0201	13.1	0.0383	1.18	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-C07:02	RQLPHTFAL	0.9931	0.9661	0.0226	335.6	0.2224	1.18	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-C03:02	RQLPHTFAL	0.7659	0.9782	0.1514	83.6	0.3923	1.18	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-B58:01	HTFALVPRL	0.9868	0.8888	0.8884	243.2	0.8948	1.18	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-C03:02	HTFALVPRL	0.9852	0.9614	0.6018	111.1	0.4846	1.18	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-A33:03	DLAGARWLPR	0.969	0.9433	0.3398	35.8	0.1244	1.18	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-B58:01	RLQARVLCAW	0.9794	0.9866	1.6564	103.4	0.4865	1.18	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-A33:03	CAWPRVGQPR	0.9738	0.6266	0.4659	70.6	0.2762	1.18	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-B07:02	QPRGPPDLGL	0.9992	0.6166	0.2793	63.4	0.2066	1.18	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-B07:02	HPRQLPHTFA	0.9937	0.5159	0.2778	68.2	0.2201	1.18	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-A33:03	LPHTFALVPR	0.9592	0.5435	1.0418	290.9	0.855	1.18	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-C03:02	FALVPRLPGL	0.9988	0.9753	0.2396	117.2	0.5028	1.18	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-B07:02	VPRLPGLLPL	0.9996	0.665	0.296	4.1	0.0078	1.18	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-B07:02	LPRTLPTRLQA	0.9994	0.5449	0.9014	221.8	0.5032	1.18	1/888	1/7086
INDEL	Breast	HPDL_Q44Rfs*145	HLA-B07:02	VPRLPGLLPLA	0.9995	0.5994	0.3514	117.6	0.3335	1.18	1/888	1/7086
INDEL	Breast	FPR3_W91Mfs*9	HLA-C03:02	MAFWLIPM	0.9998	0.9771	1.5528	97.5	0.4419	21.07	1/888	1/7086
INDEL	Breast	FPR3_W91Mfs*9	HLA-C03:02	VSVAMREKM	0.9984	0.9755	1.1472	403.6	1.2635	21.07	1/888	1/7086
INDEL	Breast	FPR3_W91Mfs*9	HLA-B58:01	VAMREKMAF	0.9519	0.9828	0.7749	212.3	0.8119	21.07	1/888	1/7086
INDEL	Breast	FPR3_W91Mfs*9	HLA-C03:02	VAMREKMAF	0.9967	0.9866	0.5038	32	0.1508	21.07	1/888	1/7086
INDEL	Breast	FPR3_W91Mfs*9	HLA-C07:02	MREKMAFWL	0.8861	0.9808	1.6513	338.6	0.2244	21.07	1/888	1/7086
INDEL	Breast	FPR3_W91Mfs*9	HLA-B58:01	VAMREKMAFW	0.9989	0.9807	0.2684	7.6	0.0344	21.07	1/888	1/7086
INDEL	Breast	GATA3_D335Efs*17	HLA-A02:01	CLQCLWALL	0.9472	0.8898	1.9543	270.8	1.9932	695.83	1/888	1/7086
INDEL	Breast	SRCAP_W137Lfs*14	HLA-B07:02	RPKGHLGL	0.9998	0.6082	0.1527	26.5	0.0971	35.11	1/888	1/7086
INDEL	Breast	SRCAP_W137Lfs*14	HLA-B07:02	RPKGHLGLF	0.9988	0.5828	0.0888	11.7	0.0326	35.11	1/888	1/7086
INDEL	Breast	SRCAP_W137Lfs*14	HLA-B07:02	FVRRDAVAL	0.996	0.5424	0.3089	60.3	0.1983	35.11	1/888	1/7086
INDEL	Breast	SRCAP_W137Lfs*14	HLA-B07:02	RPKGHLGLFV	0.9916	0.5182	0.1761	52.3	0.1798	35.11	1/888	1/7086
INDEL	Breast	CDH1_L731Gfs*38	HLA-C07:01	QRMTPGTTF	0.9984	0.7806	0.0995	289.7	0.105	23.61	1/888	1/7086
INDEL	Breast	MFSD11_V92Ffs*33	HLA-A02:01	YSMYIAFPV	0.9739	0.5361	0.3124	4.6	0.0268	9.16	1/888	1/7086
INDEL	Breast	MFSD11_V92Ffs*33	HLA-A02:05	SMYIAFPVV	0.9928	0.5366	0.1566	204.6	1.2323	9.16	1/888	1/7086
INDEL	Breast	MFSD11_V92Ffs*33	HLA-A02:01	SMYIAFPVV	0.9838	0.6611	0.1149	28.3	0.383	9.16	1/888	1/7086
INDEL	Breast	MFSD11_V92Ffs*33	HLA-A02:05	YIAFPVVLL	0.9839	0.5066	0.1435	47.3	0.3115	9.16	1/888	1/7086
INDEL	Breast	MFSD11_V92Ffs*33	HLA-A02:01	YIAFPVVLL	0.9679	0.706	0.3009	66.7	0.7986	9.16	1/888	1/7086
INDEL	Breast	MFSD11_V92Ffs*33	HLA-A02:01	SMYIAFPVVL	0.9598	0.7825	0.557	67	0.8012	9.16	1/888	1/7086
INDEL	Breast	IFIT2_N99Kfs*27	HLA-B58:01	RSLVTWGKL	0.9906	0.9905	1.6418	465.2	1.3623	9.55	1/888	1/7086
INDEL	Breast	GATA3_R329Kfs*21	HLA-A02:01	CLQCLWALL	0.9472	0.8898	1.9543	270.8	1.9932	1637.91	1/888	1/7086
INDEL	Breast	GATA3_R329Kfs*21	HLA-A23:01	QWGPCLQCLW	0.9814	0.5015	1.1472	323.6	0.7851	1637.91	1/888	1/7086
INDEL	Breast	ANTXRL_K524Sfs*77	HLA-A02:01	VLFPSTDSV	0.9913	0.7088	0.0052	11.3	0.1346	12.75	1/888	1/7086
INDEL	Breast	ANTXRL_K524Sfs*77	HLA-B53:01	LPETQPGVLF	0.9858	0.7291	0.4033	131.7	0.1563	12.75	1/888	1/7086
INDEL	Breast	UNK_Y236Lfs*30	HLA-B15:03	AQIQVVSM	0.9339	0.9095	0.0979	29	0.5198	20.32	1/888	1/7086
INDEL	Breast	UNK_Y236Lfs*30	HLA-B35:01	LPQQQGPAA	0.7887	0.9362	0.193	235.3	0.5507	20.32	1/888	1/7086
INDEL	Breast	UNK_Y236Lfs*30	HLA-B35:01	EAQIQVVSM	0.9385	0.7958	0.2138	305.9	0.6492	20.32	1/888	1/7086
INDEL	Breast	CDH1_N570Mfs*14	HLA-C03:04	TALIIATDM	0.9948	0.9871	0.6854	340.7	0.7782	6.77	1/888	1/7086
INDEL	Breast	CDH1_N570Mfs*14	HLA-C03:04	LIIATDMVL	0.9964	0.992	0.9173	34.4	0.1573	6.77	1/888	1/7086
INDEL	Breast	CDH1_N570Mfs*14	HLA-C12:03	LIIATDMVL	0.9794	0.985	1.7038	182.8	0.7649	6.77	1/888	1/7086
INDEL	Breast	CDH1_N570Mfs*14	HLA-C03:04	IATDMVLQL	0.9998	0.9938	0.0045	14.5	0.0577	6.77	1/888	1/7086
INDEL	Breast	CDH1_N570Mfs*14	HLA-C12:03	IATDMVLQL	0.9965	0.9926	0.0062	34.2	0.1427	6.77	1/888	1/7086
INDEL	Breast	GATA3_A313Efs*42	HLA-B35:01	MPMGTLSAM	0.9988	0.9408	0.0062	1.9	0.0052	1264.51	1/888	1/7086
INDEL	Breast	GATA3_A313Efs*42	HLA-B35:01	MPVGSTTSF	0.9993	0.9781	0.0008	2.3	0.0064	1264.51	1/888	1/7086
INDEL	Breast	GATA3_A313Efs*42	HLA-B35:01	QPHSGGGMPM	0.9072	0.7219	0.6854	348.1	0.6971	1264.51	1/888	1/7086
INDEL	Breast	GATA3_A313Efs*42	HLA-B35:01	AMPVGSTTSF	0.9537	0.9679	1.0524	25.6	0.1018	1264.51	1/888	1/7086
INDEL	Breast	GATA3_A313Efs*42	HLA-B35:01	SAMPVGSTTSF	0.9991	0.9469	0.0427	178.2	0.4584	1264.51	1/888	1/7086
INDEL	Breast	GATA3_A313Efs*42	HLA-B35:01	MPVGSTTSFTI	0.9942	0.957	0.8723	377.9	0.7366	1264.51	1/888	1/7086
INDEL	Breast	ARHGAP35_E1359_V1360del	HLA-A32:01	KLHALKLKKF	0.9824	0.9467	0.678	460.5	0.7099	25.8	1/888	1/7086
INDEL	Breast	ARID1A_P728Afs*11	HLA-B42:01	MPPRASRTA	0.951	0.5329	0.4883	141.7	0.5703	60.25	1/888	1/7086
INDEL	Breast	ARID1A_P728Afs*11	HLA-B42:01	MPPRASRTAS	0.9173	0.5491	1.8644	429	1.1134	60.25	1/888	1/7086
INDEL	Breast	KLC4_Q350Afs*21	HLA-A02:02	NLALLCQNA	0.9346	0.6023	1.388	109.2	1.9652	11.98	1/888	1/7086
INDEL	Breast	GATA3_N331Efs*21	HLA-A02:02	CLQCLWALL	0.9733	0.8766	0.9381	73.2	1.4783	1743.24	1/888	1/7086
INDEL	Breast	EVI5_Q795Lfs*32	HLA-C03:02	VVLRVTATL	0.9831	0.9722	0.8991	117.8	0.5049	6.13	1/888	1/7086
INDEL	Breast	PDGFRA_K504del	HLA-C03:02	IAVRCLANL	0.9984	0.953	0.9549	206.1	0.7834	14.28	1/888	1/7086
INDEL	Breast	POR_E505Afs*66	HLA-C03:02	AQVPVPPAL	0.8611	0.989	0.1821	163.5	0.6579	79.71	1/888	1/7086
INDEL	Breast	POR_E505Afs*66	HLA-A33:03	HACHHGGPR	0.9682	0.5994	0.5128	76.8	0.3004	79.71	1/888	1/7086
INDEL	Breast	POR_E505Afs*66	HLA-C03:02	AAVLRLPPL	0.998	0.9882	0.388	78.3	0.3728	79.71	1/888	1/7086
INDEL	Breast	POR_E505Afs*66	HLA-C03:02	RAQVPVPPAL	0.9929	0.9837	0.6911	309.9	1.0615	79.71	1/888	1/7086
INDEL	Breast	NRARP_A4Gfs*209	HLA-B07:02	WPPGHRAL	0.9996	0.5883	1.0292	123.8	0.3453	7.64	1/888	1/7086
INDEL	Breast	NRARP_A4Gfs*209	HLA-A68:01	AAAEHDQLR	0.8917	0.5438	0.4529	91.5	0.8551	7.64	1/888	1/7086
INDEL	Breast	NRARP_A4Gfs*209	HLA-B07:02	RARGPDGAA	0.9914	0.7645	1.0192	114.3	0.3269	7.64	1/888	1/7086
INDEL	Breast	NRARP_A4Gfs*209	HLA-A68:01	EAAGQVRRR	0.9978	0.6333	0.184	52.7	0.5662	7.64	1/888	1/7086
INDEL	Breast	NRARP_A4Gfs*209	HLA-B07:02	QPRRLERAA	0.9986	0.5116	0.5657	75.5	0.2386	7.64	1/888	1/7086
INDEL	Breast	NRARP_A4Gfs*209	HLA-A68:01	DGAAPVGHRR	0.9882	0.5338	0.3283	67	0.6791	7.64	1/888	1/7086
INDEL	Breast	NRARP_A4Gfs*209	HLA-B07:02	RVRWPPGHRAL	0.9999	0.7231	0.8024	116.7	0.3316	7.64	1/888	1/7086
INDEL	Breast	SQSTM1_D108Pfs*42	HLA-A68:01	HGAPQCDLR	0.89	0.577	0.9595	347.6	1.8661	162.83	1/888	1/7086
INDEL	Breast	ZFP36L1_T43Hfs*32	HLA-C02:02	LSHPAQLQV	0.7015	0.9843	0.0835	395.3	0.2584	374.59	1/888	2/7086
INDEL	Breast	ZFP36L1_T43Hfs*32	HLA-A02:01	ALSHPAQLQV	0.9849	0.6947	0.6095	230	1.7949	374.59	1/888	1/7086
INDEL	Breast	ZNF586_I250Yfs*2	HLA-C02:02	RSFAENSSLY	0.9741	0.9833	0.1609	392.1	0.2556	10.19	1/888	1/7086
INDEL	Breast	GATA3_R329Efs*22	HLA-B35:01	WALLQASQY	0.9946	0.7042	0.4061	27.2	0.1088	707.41	1/888	1/7086
INDEL	Breast	MAP3K1_D1000Sfs*81	HLA-B07:02	VPAGTATSL	0.9993	0.528	0.0166	10.5	0.0279	22.23	1/888	1/7086
INDEL	Breast	MAP3K1_D1000Sfs*81	HLA-C12:03	LSIDFRDSF	0.9633	0.9584	0.2287	46.3	0.1991	22.23	1/888	1/7086
INDEL	Breast	MAP3K1_D1000Sfs*81	HLA-C07:02	FRDSFPAEY	0.9007	0.9192	0.0495	65.7	0.0324	22.23	1/888	1/7086
INDEL	Breast	MAP3K1_D1000Sfs*81	HLA-C12:03	FLYNSTETV	0.9526	0.9878	0.2499	12.9	0.0398	22.23	1/888	1/7086
INDEL	Breast	MAP3K1_D1000Sfs*81	HLA-C12:03	TQINFPQSL	0.9772	0.9933	0.1448	117.5	0.5174	22.23	1/888	1/7086
INDEL	Breast	MAP3K1_D1000Sfs*81	HLA-C12:03	VTYTGQSHL	0.9972	0.9851	0.1994	55.5	0.2495	22.23	1/888	1/7086
INDEL	Breast	MAP3K1_D1000Sfs*81	HLA-C12:03	YTGQSHLDL	0.5157	0.9819	1.1617	376.6	1.2856	22.23	1/888	1/7086
INDEL	Breast	MAP3K1_D1000Sfs*81	HLA-B38:01	SHLDLPQVI	0.9974	0.9851	0.0096	163.8	0.0223	22.23	1/888	1/7086
INDEL	Breast	MAP3K1_D1000Sfs*81	HLA-B07:02	SVPAGTATSL	0.9576	0.5181	0.5435	20.2	0.0702	22.23	1/888	1/7086
INDEL	Breast	MAP3K1_D1000Sfs*81	HLA-C07:02	FRDSFPAEYL	0.9902	0.9237	0.3413	236.6	0.1555	22.23	1/888	1/7086
INDEL	Breast	MAP3K1_D1000Sfs*81	HLA-C12:03	FLYNSTETVL	0.9993	0.9889	0.1994	172.6	0.7271	22.23	1/888	1/7086
INDEL	Breast	MAP3K1_D1000Sfs*81	HLA-B38:01	FRDSFPAEYLL	0.9981	0.8084	1.5343	457.5	0.077	22.23	1/888	1/7086
INDEL	Breast	KLHL15_T217Nfs*18	HLA-B38:01	NHHSEYPVL	0.9991	0.9709	0.0121	265.1	0.0418	6.21	1/888	1/7086
INDEL	Breast	KLHL15_T217Nfs*18	HLA-B38:01	HHSEYPVLL	0.9997	0.9909	0.0011	21.4	0.0071	6.21	1/888	1/7086
INDEL	Breast	KLHL15_T217Nfs*18	HLA-C07:02	HHSEYPVLL	0.7388	0.9852	0.0073	210	0.1371	6.21	1/888	1/7086
INDEL	Breast	KLHL15_T217Nfs*18	HLA-B38:01	NHHSEYPVLL	0.998	0.9724	0.0131	228.4	0.0342	6.21	1/888	1/7086
INDEL	Breast	GATA3_P419Dfs*85	HLA-B07:02	APAIQPVL	0.9964	0.7344	0.0255	100.2	0.2968	614.02	1/888	1/7086
INDEL	Breast	GATA3_P419Dfs*85	HLA-A02:01	AIQPVLWTT	0.7836	0.8093	1.192	249.4	1.8972	614.02	1/888	1/7086
INDEL	Breast	GATA3_P419Dfs*85	HLA-B07:02	QPVLWTTPPL	0.9713	0.6432	0.7226	32.7	0.1156	614.02	1/888	1/7086
INDEL	Breast	UGGT2_L202Cfs*35	HLA-B58:01	CTYLGMVW	0.9964	0.9972	0.7905	346.4	1.1387	3.35	1/888	1/7086
INDEL	Breast	UGGT2_L202Cfs*35	HLA-C03:02	FSAFHKVCL	0.9946	0.9599	0.241	104.3	0.4638	3.35	1/888	1/7086
INDEL	Breast	UGGT2_L202Cfs*35	HLA-C03:03	FSAFHKVCL	0.999	0.9879	0.1336	65.7	0.2666	3.35	1/888	1/7086
INDEL	Breast	UGGT2_L202Cfs*35	HLA-B15:01	KMRKFCMFF	0.9583	0.8398	0.8677	30.5	0.1411	3.35	1/888	1/7086
INDEL	Breast	UGGT2_L202Cfs*35	HLA-C03:02	FAIIFRNQA	0.9145	0.9783	0.6594	349.4	1.1506	3.35	1/888	1/7086
INDEL	Breast	UGGT2_L202Cfs*35	HLA-B15:01	NQAHGKCTY	0.9991	0.7162	0.4529	123.5	0.6261	3.35	1/888	1/7086
INDEL	Breast	UGGT2_L202Cfs*35	HLA-C03:03	QAHGKCTYL	0.9927	0.9888	0.3941	496	1.0058	3.35	1/888	1/7086
INDEL	Breast	UGGT2_L202Cfs*35	HLA-B58:01	KCTYLGMVW	0.9949	0.9965	0.6173	17.6	0.1162	3.35	1/888	1/7086
INDEL	Breast	ZFYVE26_D531Afs*10	HLA-B15:01	SLSEAGLSY	0.9991	0.9233	0.0745	22.9	0.0972	4.96	1/888	1/7086
INDEL	Breast	DIDO1_S464Ifs*27	HLA-B15:01	AQAGIKIIF	0.9994	0.8147	0.0052	36.7	0.1801	16.85	1/888	1/7086
INDEL	Breast	MTMR12_T57_V58delinsI	HLA-B44:03	CEASILKY	0.9998	0.9034	0.1149	484.6	0.4268	105.41	1/888	1/7086
INDEL	Breast	MTMR12_T57_V58delinsI	HLA-B44:03	CEASILKYV	0.9451	0.9158	0.6058	236.8	0.2459	105.41	1/888	1/7086
INDEL	Breast	SLC35C2_T200_M201insC	HLA-A02:01	CMFHLQPLM	0.9468	0.6386	0.8149	183.8	1.561	25.81	1/888	1/7086
INDEL	Breast	CBWD2_G6Rfs*37	HLA-B27:05	RRIVLNWF	0.9999	0.8681	1.3695	144.5	0.4744	2.94	1/888	1/7086
INDEL	Breast	CBWD2_G6Rfs*37	HLA-B27:05	RRRIVLNWF	0.9976	0.8915	0.6854	122.9	0.4067	2.94	1/888	1/7086
INDEL	Breast	CBWD2_G6Rfs*37	HLA-B27:05	RRIVLNWFP	0.9975	0.8591	1.403	193.4	0.5995	2.94	1/888	1/7086
INDEL	Breast	CBWD2_G6Rfs*37	HLA-B27:05	RRRKSLASA	0.9949	0.7541	1.1225	323.4	0.899	2.94	1/888	1/7086
INDEL	Breast	CBWD2_G6Rfs*37	HLA-B27:05	VRRRIVLNWF	0.9981	0.874	1.1501	279.6	0.8069	2.94	1/888	1/7086
INDEL	Breast	CBWD2_G6Rfs*37	HLA-B27:05	RRIVLNWFPW	0.9996	0.887	0.9621	25.7	0.0516	2.94	1/888	1/7086
INDEL	Breast	CBWD2_G6Rfs*37	HLA-B27:05	RRKARRRKSL	0.9951	0.9324	1.566	349.5	0.9565	2.94	1/888	1/7086
INDEL	Breast	CBWD2_G6Rfs*37	HLA-B27:05	RRKSLASAPR	0.9986	0.6948	0.8004	100.1	0.3341	2.94	1/888	1/7086
INDEL	Breast	CBWD2_G6Rfs*37	HLA-B27:05	RRIVLNWFPWR	0.9999	0.8702	0.8127	24.8	0.0483	2.94	1/888	1/7086
INDEL	Breast	CBWD2_G6Rfs*37	HLA-B27:05	RRRKSLASAPR	0.9985	0.5922	0.9913	268.9	0.7846	2.94	1/888	1/7086
INDEL	Breast	SEC24A_C824Vfs*4	HLA-B27:05	RRIRVHTLV	0.9996	0.6054	0.5723	16.5	0.0192	26.85	1/888	1/7086
INDEL	Breast	SEC24A_C824Vfs*4	HLA-B27:05	RRIRVHTLVC	0.9994	0.5626	1.073	115.1	0.3827	26.85	1/888	1/7086
INDEL	Breast	TP53_G108Vfs*15	HLA-B15:01	YQGSYVSVW	0.9605	0.963	0.9036	206.3	0.9354	23.39	1/888	1/7086
INDEL	Breast	ZMYM6_G389Efs*33	HLA-C12:02	VSIEEVTPL	0.9996	0.983	0.3736	122.5	0.1539	3.13	1/888	1/7086
INDEL	Breast	SZT2_G713Vfs*54	HLA-B57:01	SSGMRSCPW	0.9946	0.9636	0.6911	85.1	0.208	2.22	1/888	1/7086
INDEL	Breast	SZT2_G713Vfs*54	HLA-B57:01	RPCLTGPALW	0.9962	0.9731	0.2868	263.5	0.4639	2.22	1/888	1/7086
INDEL	Breast	SZT2_G713Vfs*54	HLA-B57:01	PALWSCISHW	0.9968	0.9624	0.8655	493	0.7408	2.22	1/888	1/7086
INDEL	Breast	SZT2_G713Vfs*54	HLA-B57:01	CSSGMRSCPW	0.9993	0.9603	0.6594	39.5	0.108	2.22	1/888	1/7086
INDEL	Breast	SZT2_G713Vfs*54	HLA-B57:01	AALPPSHPPCW	0.9999	0.9796	0.1086	197.8	0.3783	2.22	1/888	1/7086
INDEL	Breast	SZT2_P2368Lfs*9	HLA-C12:02	RASTFPLPL	0.9232	0.9736	0.4397	144.2	0.1902	2.22	1/888	1/7086
INDEL	Breast	SZT2_P2368Lfs*9	HLA-B57:01	STFPLPLSL	0.9751	0.9851	0.0539	348.3	0.5699	2.22	1/888	1/7086
INDEL	Breast	SZT2_P2368Lfs*9	HLA-C06:02	STFPLPLSL	0.9867	0.9981	0.0315	368.5	0.124	2.22	1/888	1/7086
INDEL	Breast	SZT2_P2368Lfs*9	HLA-C12:02	STFPLPLSL	0.9792	0.9897	0.0315	35.1	0.0343	2.22	1/888	1/7086
INDEL	Breast	SZT2_P2368Lfs*9	HLA-B57:01	RASTFPLPLSL	0.9993	0.977	0.7376	331.1	0.5483	2.22	1/888	1/7086
INDEL	Breast	RPS8_I145Ffs*46	HLA-A24:02	RMPKSAVSW	0.9782	0.6275	0.2382	264.8	0.4435	1370.41	1/888	1/7086
INDEL	Breast	RPS8_I145Ffs*46	HLA-B57:01	RMPKSAVSW	0.992	0.9842	0.051	179.5	0.3535	1370.41	1/888	1/7086
INDEL	Breast	RPS8_I145Ffs*46	HLA-B57:01	RSSSSRASF	0.9959	0.9829	0.5002	64.2	0.1682	1370.41	1/888	1/7086
INDEL	Breast	RPS8_I145Ffs*46	HLA-C12:02	RSSSSRASF	0.5648	0.9873	0.5002	393.9	0.5553	1370.41	1/888	1/7086
INDEL	Breast	RPS8_I145Ffs*46	HLA-B57:01	RASFLRASL	0.9777	0.9817	1.2431	391.5	0.6224	1370.41	1/888	1/7086
INDEL	Breast	RPS8_I145Ffs*46	HLA-C12:02	RASFLRASL	0.9236	0.9843	0.3254	225.2	0.3264	1370.41	1/888	1/7086
INDEL	Breast	RPS8_I145Ffs*46	HLA-B57:01	RSSSSRASFL	0.9877	0.9861	1.8985	382.1	0.6104	1370.41	1/888	1/7086
INDEL	Breast	LRRC41_P345Qfs*44	HLA-C12:02	LLAPSGHLL	0.9773	0.9832	0.2367	341	0.4831	32.96	1/888	1/7086
INDEL	Breast	ORC1_A592Qfs*41	HLA-A24:02	LWMSSTFCGL	0.9557	0.5685	0.9253	192	0.3518	13.5	1/888	1/7086
INDEL	Breast	KIAA1324_F785Sfs*11	HLA-B57:01	TSPAELSTW	0.9953	0.9812	0.251	145.1	0.2994	166.98	1/888	1/7086
INDEL	Breast	KIAA1324_F785Sfs*11	HLA-B57:01	ITSPAELSTW	0.9999	0.9665	0.0187	9.3	0.0107	166.98	1/888	1/7086
INDEL	Breast	KIAA1324_F785Sfs*11	HLA-B57:01	GITSPAELSTW	0.9995	0.9734	0.4167	110.9	0.2469	166.98	1/888	1/7086
INDEL	Breast	XDH_V783Gfs*37	HLA-B57:01	SSEENGRRLW	0.9998	0.9532	0.2573	426	0.6636	3.02	1/888	1/7086
INDEL	Breast	XDH_V783Gfs*37	HLA-B57:01	GSSEENGRRLW	1	0.9446	0.3107	318.5	0.5319	3.02	1/888	1/7086
INDEL	Breast	EPC2_E70Rfs*39	HLA-B57:01	SSFIFSLLI	0.9346	0.8992	1.0781	454.5	0.6953	15.02	1/888	1/7086
INDEL	Breast	EPC2_E70Rfs*39	HLA-B52:01	SSFIFSLLI	0.7954	0.834	0.6737	370.7	0.0095	15.02	1/888	2/7086
INDEL	Breast	EPC2_E70Rfs*39	HLA-B57:01	QVFREKKRVW	0.998	0.984	0.3445	221	0.4082	15.02	1/888	1/7086
INDEL	Breast	HDAC4_K282Sfs*116	HLA-B57:01	RVWRTDLW	0.9994	0.9851	0.1793	59	0.1563	2.6	1/888	1/7086
INDEL	Breast	HDAC4_K282Sfs*116	HLA-B57:01	VTALKSVRW	0.9997	0.9761	0.0412	24	0.0578	2.6	1/888	1/7086
INDEL	Breast	HDAC4_K282Sfs*116	HLA-C12:02	WACLPPAPL	0.9304	0.9954	0.678	464.9	0.6479	2.6	1/888	2/7086
INDEL	Breast	HDAC4_K282Sfs*116	HLA-B57:01	VVTALKSVRW	0.9997	0.971	0.2071	61.2	0.1615	2.6	1/888	1/7086
INDEL	Breast	SETMAR_F116Lfs*58	HLA-B57:01	KAGDFVPW	0.9996	0.9983	0.7808	437.5	0.6767	28.93	1/888	1/7086
INDEL	Breast	SETMAR_F116Lfs*58	HLA-C12:02	YAEPVLNAM	0.9986	0.979	0.1915	26.7	0.024	28.93	1/888	1/7086
INDEL	Breast	SETMAR_F116Lfs*58	HLA-B57:01	AVTTAETEW	0.9066	0.9942	0.2942	209.2	0.3926	28.93	1/888	1/7086
INDEL	Breast	SETMAR_F116Lfs*58	HLA-B57:01	LSVNMLVRF	0.9993	0.9344	0.3753	160.1	0.3244	28.93	1/888	1/7086
INDEL	Breast	SETMAR_F116Lfs*58	HLA-C06:02	YRKEGLSVNM	0.9792	0.9794	0.6875	314.2	0.108	28.93	1/888	2/7086
INDEL	Breast	SETMAR_F116Lfs*58	HLA-B57:01	RIKKAGDFVPW	0.9996	0.9859	0.2009	464.1	0.7065	28.93	1/888	1/7086
INDEL	Breast	TADA3_K97Nfs*81	HLA-B57:01	MGSPRSRNW	0.9986	0.9875	0.555	136.6	0.2875	97.52	1/888	1/7086
INDEL	Breast	TADA3_K97Nfs*81	HLA-B57:01	RSRNMNSLM	0.9774	0.9735	1.0924	179.7	0.3539	97.52	1/888	1/7086
INDEL	Breast	TADA3_K97Nfs*81	HLA-C12:02	MMPPTGSGL	0.9825	0.9928	0.2499	407.6	0.574	97.52	1/888	1/7086
INDEL	Breast	TADA3_K97Nfs*81	HLA-B57:01	KTFSPRSRNM	0.997	0.9713	0.8422	375.9	0.6025	97.52	1/888	1/7086
INDEL	Breast	TADA3_K97Nfs*81	HLA-C06:02	SRNMNSLMTL	0.9565	0.9974	1.1142	257.5	0.0899	97.52	1/888	1/7086
INDEL	Breast	TADA3_K97Nfs*81	HLA-B57:01	RSRNMNSLMTL	0.9959	0.9784	0.8127	294	0.4985	97.52	1/888	1/7086
INDEL	Breast	PTPRG_N156Kfs*7	HLA-B57:01	KVEFHWGHSKW	1	0.9953	0.2996	391.7	0.6226	2.73	1/888	1/7086
INDEL	Breast	TMEM39A_F80Sfs*33	HLA-C12:02	FSFSTSTF	0.9994	0.9731	0.4563	155.9	0.2085	28.13	1/888	1/7086
INDEL	Breast	TMEM39A_F80Sfs*33	HLA-B57:01	FSSTCWLLF	0.9805	0.941	0.5144	340.3	0.5599	28.13	1/888	1/7086
INDEL	Breast	TMEM39A_F80Sfs*33	HLA-C12:02	FSSTCWLLF	0.74	0.9594	0.719	210.5	0.3017	28.13	1/888	1/7086
INDEL	Breast	TMEM39A_F80Sfs*33	HLA-B57:01	STCWLLFSF	0.951	0.8985	0.5019	420.3	0.657	28.13	1/888	1/7086
INDEL	Breast	TMEM39A_F80Sfs*33	HLA-C12:02	LFSFSTSTF	0.7216	0.9704	0.9993	443.5	0.6211	28.13	1/888	1/7086
INDEL	Breast	TMEM39A_F80Sfs*33	HLA-C06:02	FSFSTSTFI	0.9628	0.9897	1.5295	341.1	0.1163	28.13	1/888	1/7086
INDEL	Breast	TMEM39A_F80Sfs*33	HLA-C12:02	FSFSTSTFI	0.909	0.9621	1.004	22.1	0.0191	28.13	1/888	1/7086
INDEL	Breast	TMEM39A_F80Sfs*33	HLA-B57:01	SSTCWLLFSF	0.9973	0.8897	0.9595	292.5	0.497	28.13	1/888	1/7086
INDEL	Breast	ABCC5_L1090Vfs*62	HLA-C12:02	YARADSPSL	0.999	0.9287	0.0452	47	0.0532	5.08	1/888	2/7086
INDEL	Breast	KIAA0232_K1181Nfs*24	HLA-B57:01	LGWKRVLRHHW	0.9995	0.9907	1.4485	459.9	0.7014	20.74	1/888	1/7086
INDEL	Breast	UBA6_F299Lfs*8	HLA-B57:01	KTVFLNHW	0.9998	0.9698	0.1688	20.4	0.0419	22.22	1/888	1/7086
INDEL	Breast	UBA6_F299Lfs*8	HLA-B57:01	KTPKTVFLNHW	0.9999	0.9702	0.0686	63.1	0.1659	22.22	1/888	1/7086
INDEL	Breast	SCLT1_A424Qfs*6	HLA-B57:01	RVIKEKKQW	0.9985	0.9692	0.0154	38.8	0.1058	3.71	1/888	1/7086
INDEL	Breast	CHD1_M813Nfs*39	HLA-B57:01	SSIPLSKIRW	0.9999	0.7758	0.0734	12.4	0.0158	18.37	1/888	1/7086
INDEL	Breast	CHD1_M813Nfs*39	HLA-B57:01	ISSIPLSKIRW	1	0.8297	0.0808	65.1	0.1703	18.37	1/888	1/7086
INDEL	Breast	CHD1_M813Nfs*39	HLA-B57:01	SSIPLSKIRWI	0.9983	0.7711	1.1421	475.2	0.7199	18.37	1/888	1/7086
INDEL	Breast	KDM3B_G714Afs*81	HLA-C12:02	LTSGAQASL	0.9799	0.9782	0.6273	377.5	0.5319	45.44	1/888	1/7086
INDEL	Breast	KDM3B_G714Afs*81	HLA-B57:01	SGAQASLPW	0.9896	0.9757	0.6535	184.8	0.3609	45.44	1/888	1/7086
INDEL	Breast	KDM3B_G714Afs*81	HLA-C12:02	MAAPARPPA	0.9755	0.9897	0.0717	431.6	0.6057	45.44	1/888	1/7086
INDEL	Breast	KDM3B_G714Afs*81	HLA-C12:02	RTIPSSKPL	0.9251	0.9623	0.4426	300.7	0.4344	45.44	1/888	1/7086
INDEL	Breast	KDM3B_G714Afs*81	HLA-C12:02	SSKPLVTSL	0.9992	0.9762	0.1775	251.3	0.3666	45.44	1/888	1/7086
INDEL	Breast	KDM3B_G714Afs*81	HLA-B57:01	TSGAQASLPW	0.999	0.9735	0.6429	51.9	0.1406	45.44	1/888	1/7086
INDEL	Breast	KDM3B_G714Afs*81	HLA-B57:01	LAPQRRGQLW	0.9995	0.9685	0.4167	140.7	0.2933	45.44	1/888	1/7086
INDEL	Breast	KDM3B_G714Afs*81	HLA-B57:01	LTSGAQASLPW	0.9998	0.9665	0.3529	39.3	0.1074	45.44	1/888	1/7086
INDEL	Breast	LARS_G613Vfs*18	HLA-B57:01	VTCMDRQSLRW	0.9999	0.9768	0.3041	237.3	0.4307	83.11	1/888	1/7086
INDEL	Breast	DEK_A285Qfs*28	HLA-B57:01	VSLRIVQMM	0.9974	0.958	0.4698	456	0.697	82.01	1/888	1/7086
INDEL	Breast	NOTCH4_Q177Rfs*75	HLA-C12:02	TAHRASRAM	0.8972	0.9511	0.5181	324	0.4633	2.16	1/888	1/7086
INDEL	Breast	NOTCH4_Q177Rfs*75	HLA-B57:01	KAPPAITPW	0.9993	0.966	0.1527	41.1	0.1132	2.16	1/888	1/7086
INDEL	Breast	NOTCH4_Q177Rfs*75	HLA-C12:02	WAPSSASAL	0.9272	0.975	0.2122	242.3	0.3534	2.16	1/888	1/7086
INDEL	Breast	NOTCH4_Q177Rfs*75	HLA-B57:01	WAPSSASALW	0.9992	0.9811	0.3318	33	0.0854	2.16	1/888	1/7086
INDEL	Breast	PLA2G7_F316Lfs*14	HLA-C06:02	YSRIPQPLFL	0.9934	0.9735	1.0341	56.5	0.018	23.78	1/888	1/7086
INDEL	Breast	PLA2G7_F316Lfs*14	HLA-C12:02	YSRIPQPLFL	0.9901	0.8977	0.3268	411.5	0.5792	23.78	1/888	1/7086
INDEL	Breast	FAM26E_F246Lfs*75	HLA-B57:01	KTRGQILF	0.9991	0.8651	0.8698	493.7	0.7416	1.9	1/888	2/7086
INDEL	Breast	FAM26E_F246Lfs*75	HLA-B57:01	NTIAPSTEW	0.9832	0.9798	0.0121	52.9	0.1428	1.9	1/888	2/7086
INDEL	Breast	FAM26E_F246Lfs*75	HLA-B57:01	TIAPSTEWW	0.9648	0.9957	0.1418	307.1	0.5165	1.9	1/888	2/7086
INDEL	Breast	FAM26E_F246Lfs*75	HLA-B57:01	MMRRQWSLW	0.9908	0.9956	0.5419	35.9	0.096	1.9	1/888	2/7086
INDEL	Breast	FAM26E_F246Lfs*75	HLA-B57:01	SNTIAPSTEW	0.9948	0.9848	0.8585	47.7	0.1311	1.9	1/888	2/7086
INDEL	Breast	FAM26E_F246Lfs*75	HLA-B57:01	NTIAPSTEWW	0.9996	0.9791	0.0861	116.4	0.2555	1.9	1/888	2/7086
INDEL	Breast	FAM26E_F246Lfs*75	HLA-B57:01	LALRMMRRQW	0.9992	0.9942	0.6973	21.9	0.0511	1.9	1/888	2/7086
INDEL	Breast	FAM26E_F246Lfs*75	HLA-B57:01	RMMRRQWSLW	0.9993	0.99	0.713	32.2	0.0821	1.9	1/888	2/7086
INDEL	Breast	FAM26E_F246Lfs*75	HLA-C06:02	MRRQWSLWVL	0.8334	0.9937	1.8202	200.3	0.0727	1.9	1/888	3/7086
INDEL	Breast	FAM26E_F246Lfs*75	HLA-B57:01	ASNTIAPSTEW	0.9999	0.9838	0.2054	76.8	0.1934	1.9	1/888	2/7086
INDEL	Breast	TULP4_T459Sfs*45	HLA-B57:01	YSSTWSTW	0.9994	0.9881	0.3639	75.8	0.1914	20.67	1/888	1/7086
INDEL	Breast	TULP4_T459Sfs*45	HLA-A24:02	CYSSTWSTW	0.9964	0.6584	0.1947	19.9	0.0378	20.67	1/888	1/7086
INDEL	Breast	TULP4_T459Sfs*45	HLA-B57:01	VGGPCYSSTW	0.999	0.9676	0.5195	386.7	0.6163	20.67	1/888	1/7086
INDEL	Breast	TULP4_T459Sfs*45	HLA-B57:01	ASCGQSSSSW	0.9994	0.9784	0.3914	80.9	0.2007	20.67	1/888	1/7086
INDEL	Breast	TULP4_T459Sfs*45	HLA-B57:01	SASCGQSSSSW	0.9996	0.9615	0.5471	341.7	0.5617	20.67	1/888	1/7086
INDEL	Breast	ARHGEF5_E1451Kfs*5	HLA-C12:02	FSSIRGKSV	0.6189	0.9364	0.4614	445.9	0.6242	6.87	1/888	1/7086
INDEL	Breast	PINX1_G148Wfs*6	HLA-B57:01	KTDLDCIFW	0.9906	0.968	0.0084	234.1	0.4265	6.53	1/888	1/7086
INDEL	Breast	PINX1_G148Wfs*6	HLA-B57:01	RSKTDLDCIFW	0.9999	0.9896	0.0214	94.1	0.2228	6.53	1/888	1/7086
INDEL	Breast	DLC1_R617Gfs*37	HLA-B57:01	SAFAPPATW	0.9988	0.9982	0.0084	12.1	0.0149	4.32	1/888	2/7086
INDEL	Breast	DLC1_R617Gfs*37	HLA-B57:01	SSAFAPPATW	0.9999	0.9976	0.1915	14.5	0.0226	4.32	1/888	2/7086
INDEL	Breast	DLC1_R617Gfs*37	HLA-C12:02	FAPPATWQAM	0.9996	0.9867	0.23	323.2	0.4623	4.32	1/888	1/7086
INDEL	Breast	DLC1_R617Gfs*37	HLA-B57:01	PSSAFAPPATW	0.9998	0.9934	0.4902	126.1	0.2714	4.32	1/888	2/7086
INDEL	Breast	NAT1_Y101Ifs*15	HLA-B57:01	STPAKKIQHW	0.9996	0.9038	0.2335	152.8	0.3124	124.29	1/888	1/7086
INDEL	Breast	NAT1_Y101Ifs*15	HLA-B57:01	YSTPAKKIQHW	1	0.9222	0.0383	112.9	0.2496	124.29	1/888	1/7086
INDEL	Breast	RGS22_K1058Nfs*41	HLA-B57:01	RTCAILIVM	0.9916	0.9203	0.1855	417.1	0.6533	5.15	1/888	1/7086
INDEL	Breast	RGS22_K1058Nfs*41	HLA-B57:01	STALLIPVF	0.9724	0.9468	0.2543	407.2	0.6416	5.15	1/888	1/7086
INDEL	Breast	RGS22_K1058Nfs*41	HLA-B57:01	LSTALLIPVF	0.999	0.9583	0.7788	258.8	0.4582	5.15	1/888	1/7086
INDEL	Breast	PHF20L1_N322Mfs*42	HLA-B57:01	LTLAVLPTL	0.9098	0.9833	0.4367	234.8	0.4274	7.3	1/888	2/7086
INDEL	Breast	TEK_P417Lfs*10	HLA-C12:02	FTIHRILPL	0.9978	0.9473	0.1609	15.9	0.0104	1.78	1/888	1/7086
INDEL	Breast	TEK_P417Lfs*10	HLA-C12:02	LTQEFGSAV	0.5379	0.9651	0.9841	401.6	0.5658	1.78	1/888	1/7086
INDEL	Breast	PSAT1_N260Tfs*42	HLA-C12:02	LVLEWIKTM	0.964	0.9797	0.3318	212.7	0.3055	17.66	1/888	1/7086
INDEL	Breast	PSAT1_N260Tfs*42	HLA-B57:01	KTMEVPRPW	0.9997	0.993	0.0255	5.9	0.0081	17.66	1/888	1/7086
INDEL	Breast	PSAT1_N260Tfs*42	HLA-B57:01	RSLAPSNLKQF	0.9999	0.9737	0.0932	203.2	0.3851	17.66	1/888	1/7086
INDEL	Breast	ABL1_R785Gfs*3	HLA-B57:01	GTVTPPPGW	0.9722	0.9656	0.1302	55.7	0.1486	97.57	1/888	2/7086
INDEL	Breast	ABL1_R785Gfs*3	HLA-B57:01	RGTVTPPPGW	0.9986	0.9657	0.704	40.2	0.1104	97.57	1/888	2/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-C12:02	SSLSHISAL	0.9949	0.9699	0.1641	127.9	0.1635	941.99	1/888	1/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-C12:02	HAHADAPAI	0.829	0.9898	0.3753	249.3	0.3638	941.99	1/888	1/7086
INDEL	Breast	KIF20B_F444Lfs*9	HLA-C12:02	LTHYFQSFL	0.6826	0.9826	1.6513	332.2	0.4729	16.11	1/888	1/7086
INDEL	Breast	KIF20B_F444Lfs*9	HLA-B57:01	QSFLMVKGKF	0.9946	0.9609	1.4522	454.8	0.6957	16.11	1/888	1/7086
INDEL	Breast	MORN4_E14Gfs*31	HLA-C12:02	FTYSSGGGI	0.7152	0.9661	1.2269	89.4	0.1085	8.96	1/888	1/7086
INDEL	Breast	MORN4_E14Gfs*31	HLA-B57:01	YSSGGGISW	0.9974	0.9877	0.0995	39.4	0.1076	8.96	1/888	1/7086
INDEL	Breast	MORN4_E14Gfs*31	HLA-B57:01	WSTDVCRWW	0.9964	0.9613	0.2653	126.6	0.2723	8.96	1/888	1/7086
INDEL	Breast	MORN4_E14Gfs*31	HLA-A24:02	RWWHLPGSF	0.9786	0.6579	0.2604	46.1	0.1038	8.96	1/888	1/7086
INDEL	Breast	MORN4_E14Gfs*31	HLA-B57:01	TYSSGGGISW	0.9945	0.9712	0.5128	175	0.3471	8.96	1/888	1/7086
INDEL	Breast	MORN4_E14Gfs*31	HLA-B57:01	FTYSSGGGISW	0.9999	0.9898	0.0214	73	0.1862	8.96	1/888	1/7086
INDEL	Breast	MORN4_E14Gfs*31	HLA-B57:01	RVEGGPQAWFW	0.9998	0.8991	0.024	339.6	0.5591	8.96	1/888	1/7086
INDEL	Breast	PIK3C2A_F1657Sfs*5	HLA-B57:01	ESLRENFSW	0.9985	0.9614	0.0299	48.1	0.132	41.92	1/888	1/7086
INDEL	Breast	PIK3C2A_F1657Sfs*5	HLA-B57:01	AESLRENFSW	0.998	0.9804	0.2727	23.6	0.0563	41.92	1/888	1/7086
INDEL	Breast	PIK3C2A_F1657Sfs*5	HLA-B57:01	SAESLRENFSW	1	0.9806	0.1977	68.1	0.1766	41.92	1/888	1/7086
INDEL	Breast	SERGEF_P406Lfs*?	HLA-B57:01	CQLPAHLHW	0.9668	0.9969	0.2054	123.3	0.267	11.96	1/888	1/7086
INDEL	Breast	SERGEF_P406Lfs*?	HLA-B57:01	RTLNLRKPW	0.9987	0.9796	0.1098	11.3	0.0138	11.96	1/888	1/7086
INDEL	Breast	SERGEF_P406Lfs*?	HLA-C12:02	KANLTGPEM	0.8285	0.9669	0.3806	391.6	0.552	11.96	1/888	1/7086
INDEL	Breast	SERGEF_P406Lfs*?	HLA-B57:01	LCQLPAHLHW	0.9996	0.996	0.6333	150.2	0.308	11.96	1/888	1/7086
INDEL	Breast	SVIP_I57Nfs*17	HLA-B57:01	YIRAPTRRW	0.9624	0.9272	0.2352	280.1	0.4832	36.73	1/888	1/7086
INDEL	Breast	SVIP_I57Nfs*17	HLA-A24:02	CYIRAPTRRW	0.9532	0.5743	0.7945	475.7	0.6398	36.73	1/888	1/7086
INDEL	Breast	ANO3_L194Ffs*16	HLA-C12:02	LMFGEGASY	0.8411	0.9886	0.0995	185.6	0.2543	2.12	1/888	1/7086
INDEL	Breast	EIF3M_K161Sfs*5	HLA-C12:02	LTTEKSTPF	0.8904	0.9786	0.5002	233	0.339	63.98	1/888	1/7086
INDEL	Breast	SLC3A2_K300Rfs*31	HLA-B57:01	RASVSFWTL	0.9842	0.9775	0.4001	96.2	0.2261	97.29	1/888	2/7086
INDEL	Breast	SLC3A2_K300Rfs*31	HLA-B57:01	GSPLRLTLW	0.9991	0.9771	0.3898	240.1	0.4344	97.29	1/888	2/7086
INDEL	Breast	SLC3A2_K300Rfs*31	HLA-B57:01	RGSPLRLTLW	0.9999	0.9471	0.0904	30.5	0.0776	97.29	1/888	2/7086
INDEL	Breast	SLC3A2_K300Rfs*31	HLA-B57:01	SAKKRASVSFW	0.9996	0.965	0.6173	114.6	0.2524	97.29	1/888	2/7086
INDEL	Breast	INPPL1_G488Afs*43	HLA-B57:01	ASRSLRIW	0.9993	0.9886	0.557	304.9	0.5134	66.51	1/888	1/7086
INDEL	Breast	INPPL1_G488Afs*43	HLA-B57:01	GASRSLRIW	0.9991	0.9923	0.2653	35.4	0.0944	66.51	1/888	1/7086
INDEL	Breast	INPPL1_G488Afs*43	HLA-B57:01	CGISRWQCW	0.999	0.9441	0.8149	300.2	0.5069	66.51	1/888	1/7086
INDEL	Breast	INPPL1_G488Afs*43	HLA-C12:02	VSAMSVRPV	0.827	0.9667	1.5432	488.5	0.6761	66.51	1/888	1/7086
INDEL	Breast	INPPL1_G488Afs*43	HLA-B57:01	RGASRSLRIW	0.9996	0.9863	0.4865	23.5	0.0561	66.51	1/888	1/7086
INDEL	Breast	C1R_P216Lfs*100	HLA-B57:01	STPAAMLW	0.998	0.9507	0.2825	169.5	0.3389	43.54	1/888	1/7086
INDEL	Breast	C1R_P216Lfs*100	HLA-B57:01	CAATTASGW	0.9869	0.982	0.5471	42.5	0.1171	43.54	1/888	1/7086
INDEL	Breast	C1R_P216Lfs*100	HLA-B57:01	ASPCTSSSW	0.9839	0.9001	0.2745	156.5	0.3186	43.54	1/888	1/7086
INDEL	Breast	C1R_P216Lfs*100	HLA-C12:02	TTSKYTAPM	0.9809	0.9327	0.8422	251.7	0.3673	43.54	1/888	1/7086
INDEL	Breast	C1R_P216Lfs*100	HLA-B57:01	RSMPTGRTL	0.9921	0.9763	0.0131	80.8	0.2004	43.54	1/888	1/7086
INDEL	Breast	C1R_P216Lfs*100	HLA-C12:02	RSMPTGRTL	0.9399	0.98	0.0121	86.6	0.1049	43.54	1/888	1/7086
INDEL	Breast	C1R_P216Lfs*100	HLA-B57:01	TSTPAAMLW	0.9987	0.9604	0.0166	11.3	0.0139	43.54	1/888	1/7086
INDEL	Breast	C1R_P216Lfs*100	HLA-B57:01	TCAATTASGW	0.9953	0.9833	0.7788	250.3	0.4476	43.54	1/888	1/7086
INDEL	Breast	C1R_P216Lfs*100	HLA-B57:01	GASPCTSSSW	0.9985	0.9536	0.2996	67.7	0.1758	43.54	1/888	1/7086
INDEL	Breast	C1R_P216Lfs*100	HLA-C06:02	YRSMPTGRTL	0.9522	0.9933	0.2841	65.4	0.0215	43.54	1/888	3/7086
INDEL	Breast	C1R_P216Lfs*100	HLA-B57:01	PTSTPAAMLW	0.9978	0.859	0.3685	77.7	0.195	43.54	1/888	1/7086
INDEL	Breast	C1R_P216Lfs*100	HLA-B57:01	LTCAATTASGW	0.9994	0.9777	0.3769	93	0.2212	43.54	1/888	1/7086
INDEL	Breast	C1R_P216Lfs*100	HLA-C12:02	YTAPMTSYRSM	0.9996	0.9752	1.1792	487.7	0.6753	43.54	1/888	1/7086
INDEL	Breast	KMT2D_A221Lfs*40	HLA-B57:01	ITITGPAW	0.9992	0.9843	0.0452	100.9	0.233	24.32	1/888	1/7086
INDEL	Breast	KMT2D_A221Lfs*40	HLA-B57:01	VGITITGPAW	0.9991	0.982	0.259	118.2	0.2587	24.32	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-B57:01	GSRGLTLW	0.9996	0.9936	0.7438	184.2	0.3602	8.14	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-B57:01	TSSTMWLW	0.9996	0.9945	0.3736	74.3	0.1887	8.14	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-B57:01	TVLGPLTPW	0.9905	0.9951	0.2268	98.9	0.2302	8.14	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-B57:01	SVMGYGCMW	0.9428	0.9933	0.2712	78.7	0.1966	8.14	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-B57:01	MGSRGLTLW	0.9995	0.9954	0.4183	37.8	0.1024	8.14	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-A24:02	AMGPRPATF	0.982	0.6426	0.184	327.2	0.5093	8.14	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-C12:02	FSSRTSSTM	0.9981	0.9734	0.4967	23.2	0.02	8.14	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-B57:01	SSRTSSTMW	0.9996	0.9775	0.1718	18.4	0.0351	8.14	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-A24:02	RTSSTMWLW	0.9632	0.5367	0.6949	438.2	0.6031	8.14	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-B57:01	RTSSTMWLW	0.9994	0.9897	0.0045	3.3	0.0055	8.14	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-A24:02	RWCSVAAVW	0.9705	0.7063	0.4113	104.3	0.2191	8.14	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-B57:01	TTVLGPLTPW	0.9998	0.9938	0.361	39.2	0.1071	8.14	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-B57:01	ASVMGYGCMW	0.9993	0.9912	0.388	23.1	0.0549	8.14	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-A24:02	SWMGSRGLTL	0.9853	0.6074	0.4659	259	0.4366	8.14	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-B57:01	WMGSRGLTLW	0.9988	0.9951	1.1277	301.2	0.5083	8.14	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-B57:01	FSSRTSSTMW	0.9999	0.9689	0.2319	20.7	0.0438	8.14	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-B57:01	SRTSSTMWLW	0.9977	0.9899	1.0069	10.5	0.0127	8.14	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-A24:02	MWLWTRETRW	0.9682	0.7027	1.3	125.7	0.2502	8.14	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-B57:01	GTTVLGPLTPW	0.9998	0.9826	0.3736	114.3	0.252	8.14	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-B57:01	CASVMGYGCMW	0.999	0.9862	0.5399	264	0.4645	8.14	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-A24:02	SWMGSRGLTLW	0.9992	0.872	0.4134	147.4	0.2848	8.14	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-B57:01	TFSSRTSSTMW	0.9991	0.9856	0.9103	163.5	0.3297	8.14	1/888	1/7086
INDEL	Breast	CSAD_A252Pfs*112	HLA-B57:01	SSRTSSTMWLW	0.9999	0.989	0.1688	18.2	0.0346	8.14	1/888	1/7086
INDEL	Breast	RAB3IP_F434Lfs*12	HLA-C06:02	YRITSVCNFL	0.8028	0.9957	0.6079	133.8	0.0503	2.91	1/888	1/7086
INDEL	Breast	RAB3IP_F434Lfs*12	HLA-B57:01	TSVCNFLHTF	0.9999	0.8119	0.5144	314.4	0.5264	2.91	1/888	1/7086
INDEL	Breast	OSBPL8_N184Kfs*14	HLA-B57:01	LIYKTQKKW	0.9981	0.9158	0.2778	104.2	0.2378	5.2	1/888	1/7086
INDEL	Breast	MTERF2_E358Sfs*14	HLA-B57:01	KSLKLILAKF	0.9998	0.9394	0.276	33.5	0.0872	9.64	1/888	1/7086
INDEL	Breast	ZMYM2_K1044Rfs*33	HLA-C12:02	RLYQDTSLM	0.9078	0.978	0.6095	186.7	0.2565	31.56	1/888	2/7086
INDEL	Breast	ZMYM2_K1044Rfs*33	HLA-C12:02	LTIQNAAFL	0.7448	0.9694	1.1225	170.1	0.2307	31.56	1/888	2/7086
INDEL	Breast	FNDC3A_S875del	HLA-B57:01	YSPTCLAISW	0.9985	0.8701	0.4865	57.3	0.1523	25.84	1/888	1/7086
INDEL	Breast	GAS6_G150Afs*49	HLA-C12:02	ATAASSSPL	0.9636	0.9594	0.7554	406.3	0.5722	10.35	1/888	2/7086
INDEL	Breast	GAS6_G150Afs*49	HLA-C12:02	TAASSSPLM	0.8716	0.9552	0.4675	435.8	0.6112	10.35	1/888	2/7086
INDEL	Breast	EHD4_Q290Rfs*28	HLA-B57:01	TTSSSERGW	0.9947	0.9185	0.3283	82.8	0.204	12.54	1/888	1/7086
INDEL	Breast	EHD4_Q290Rfs*28	HLA-B57:01	STTSSSERGW	0.9983	0.8198	0.4196	97.5	0.228	12.54	1/888	1/7086
INDEL	Breast	EHD4_Q290Rfs*28	HLA-B57:01	SSTTSSSERGW	0.9998	0.8828	0.4529	301	0.5081	12.54	1/888	1/7086
INDEL	Breast	APOBR_G778Wfs*44	HLA-B57:01	SSRRACRW	0.9973	0.9572	0.678	383.9	0.6128	6.53	1/888	1/7086
INDEL	Breast	APOBR_G778Wfs*44	HLA-B57:01	GSSRRACRW	0.995	0.9628	0.5296	61.2	0.1616	6.53	1/888	1/7086
INDEL	Breast	APOBR_G778Wfs*44	HLA-B57:01	RACRWARIW	0.9983	0.9917	0.1086	19.4	0.0379	6.53	1/888	1/7086
INDEL	Breast	APOBR_G778Wfs*44	HLA-B57:01	RGSSRRACRW	0.9967	0.9474	0.8607	56	0.1492	6.53	1/888	1/7086
INDEL	Breast	SMYD4_C640Lfs*34	HLA-B57:01	RTYSSRSEW	0.9996	0.9701	0.0031	7.2	0.009	10.46	1/888	1/7086
INDEL	Breast	SMYD4_C640Lfs*34	HLA-B57:01	SSRSEWPRSF	0.9993	0.9804	0.678	439.2	0.6786	10.46	1/888	1/7086
INDEL	Breast	KANSL1_Q968Sfs*46	HLA-C12:02	SANPSTPSL	0.9988	0.9823	0.0734	74.6	0.089	15.01	1/888	1/7086
INDEL	Breast	KANSL1_Q968Sfs*46	HLA-C12:02	MVSPLGAPL	0.9959	0.9724	0.4096	36.8	0.0365	15.01	1/888	1/7086
INDEL	Breast	KANSL1_Q968Sfs*46	HLA-B57:01	CTQHPSPLW	0.9986	0.9926	0.3427	28.8	0.0741	15.01	1/888	2/7086
INDEL	Breast	KANSL1_Q968Sfs*46	HLA-B57:01	NCTQHPSPLW	0.9992	0.978	0.8585	377.3	0.6042	15.01	1/888	2/7086
INDEL	Breast	KANSL1_Q968Sfs*46	HLA-B57:01	RNCTQHPSPLW	0.9999	0.9599	0.6911	81.8	0.2022	15.01	1/888	2/7086
INDEL	Breast	XYLT2_G529Afs*78	HLA-B57:01	TTISRATW	0.9997	0.9795	0.2213	140.2	0.2926	27.99	1/888	8/7086
INDEL	Breast	XYLT2_G529Afs*78	HLA-C12:02	LMAPVGSVM	0.9996	0.9802	0.0762	22	0.019	27.99	1/888	4/7086
INDEL	Breast	XYLT2_G529Afs*78	HLA-B57:01	MTTISRATW	0.9997	0.9887	0.0267	6	0.0082	27.99	1/888	8/7086
INDEL	Breast	XYLT2_G529Afs*78	HLA-C12:02	RLMAPVGSVM	0.9982	0.9723	0.1994	475.7	0.661	27.99	1/888	4/7086
INDEL	Breast	XYLT2_G529Afs*78	HLA-A24:02	TMPPLLHPQW	0.9937	0.9267	0.5165	348.3	0.5292	27.99	1/888	16/7086
INDEL	Breast	XYLT2_G529Afs*78	HLA-B57:01	SMTTISRATW	0.9992	0.9784	0.2446	21	0.0462	27.99	1/888	8/7086
INDEL	Breast	XYLT2_G529Afs*78	HLA-B57:01	CTMPPLLHPQW	1	0.9939	0.0995	28	0.0723	27.99	1/888	8/7086
INDEL	Breast	XYLT2_G529Afs*78	HLA-B57:01	ISMTTISRATW	1	0.9704	0.1025	10.1	0.0121	27.99	1/888	8/7086
INDEL	Breast	HELZ_F367Sfs*13	HLA-B57:01	QTIVSTLDW	0.994	0.9747	0.2482	18.1	0.0342	14.39	1/888	1/7086
INDEL	Breast	HELZ_F367Sfs*13	HLA-B57:01	RQTIVSTLDW	0.9844	0.9648	0.3217	13.6	0.0193	14.39	1/888	1/7086
INDEL	Breast	TCF4_P647Lfs*32	HLA-B57:01	SSEPPLSPW	0.9867	0.9795	0.4825	148.8	0.3057	3.53	1/888	1/7086
INDEL	Breast	TCF4_P647Lfs*32	HLA-A24:02	PWPAHTLEW	0.9937	0.7204	0.4113	298.2	0.4802	3.53	1/888	1/7086
INDEL	Breast	TCF4_P647Lfs*32	HLA-B57:01	VSSEPPLSPW	0.9998	0.9705	0.4456	30.4	0.0772	3.53	1/888	1/7086
INDEL	Breast	TCF4_P647Lfs*32	HLA-B57:01	KVSSEPPLSPW	0.9999	0.9828	0.4426	97.9	0.2287	3.53	1/888	1/7086
INDEL	Breast	TCF4_P647Lfs*32	HLA-B57:01	LSPWPAHTLEW	1	0.9659	0.2825	472	0.716	3.53	1/888	1/7086
INDEL	Breast	C19orf12_P93Lfs*26	HLA-B57:01	LTKPQPSSGTW	1	0.9292	0.1132	66	0.1721	9.38	1/888	1/7086
INDEL	Breast	CD22_L675Pfs*58	HLA-B57:01	RPSAGEWLW	0.9372	0.987	0.0583	257	0.4559	1.62	1/888	1/7086
INDEL	Breast	CD22_L675Pfs*58	HLA-B57:01	IARRPSAGEW	0.9993	0.8429	0.267	43.4	0.1198	1.62	1/888	1/7086
INDEL	Breast	ZNF227_E657Kfs*45	HLA-C12:02	RALDTVRSL	0.9652	0.9856	0.0452	125.1	0.1586	12.35	1/888	1/7086
INDEL	Breast	ZNF227_E657Kfs*45	HLA-B57:01	RALDTVRSLY	0.9996	0.9866	0.0539	214.4	0.3988	12.35	1/888	1/7086
INDEL	Breast	BCL3_P412Lfs*70	HLA-C12:02	HLHPPSCPL	0.9704	0.9899	0.5671	455.3	0.636	42.73	1/888	1/7086
INDEL	Breast	CLASRP_P95Lfs*81	HLA-B57:01	VTTSATEAW	0.9962	0.9779	0.0919	24.7	0.0598	15.2	1/888	1/7086
INDEL	Breast	CLASRP_P95Lfs*81	HLA-C12:02	SSACTRSTL	0.9809	0.9652	0.6392	472.5	0.6572	15.2	1/888	3/7086
INDEL	Breast	CLASRP_P95Lfs*81	HLA-B57:01	SVTTSATEAW	0.9965	0.9844	0.4277	119	0.2599	15.2	1/888	1/7086
INDEL	Breast	CLASRP_P95Lfs*81	HLA-B57:01	RSSACTRSTL	0.9703	0.9673	1.3381	231.1	0.4223	15.2	1/888	1/7086
INDEL	Breast	CLASRP_P95Lfs*81	HLA-B57:01	SVIPTRTARW	0.9998	0.9684	0.0412	70.6	0.1816	15.2	1/888	1/7086
INDEL	Breast	CLASRP_P95Lfs*81	HLA-B57:01	GSVTTSATEAW	0.9998	0.9825	0.3009	75.8	0.1916	15.2	1/888	1/7086
INDEL	Breast	BAX_R89Efs*44	HLA-B57:01	FSTLPANW	0.9994	0.9932	0.23	415.6	0.6516	29.27	1/888	1/7086
INDEL	Breast	BAX_R89Efs*44	HLA-B57:01	RSFSEWQLTC	0.997	0.9672	1.1589	371.6	0.5972	29.27	1/888	1/7086
INDEL	Breast	BAX_R89Efs*44	HLA-A24:02	SFSEWQLTCF	0.9975	0.6379	0.645	111.9	0.2308	29.27	1/888	1/7086
INDEL	Breast	BAX_R89Efs*44	HLA-B57:01	RSFSEWQLTCF	0.9999	0.9635	0.0282	99.5	0.231	29.27	1/888	1/7086
INDEL	Breast	BAX_R89Efs*44	HLA-B57:01	LSPFSTLPANW	0.9998	0.9964	0.2745	90	0.2162	29.27	1/888	1/7086
INDEL	Breast	ZMYND8_K635Sfs*14	HLA-B57:01	KSPSLQTQW	0.9996	0.9922	0.0979	21.9	0.0511	71.68	1/888	2/7086
INDEL	Breast	ZMYND8_K635Sfs*14	HLA-B57:01	KKSPSLQTQW	0.9951	0.9923	0.0558	53.6	0.1441	71.68	1/888	2/7086
INDEL	Breast	ZMYND8_K635Sfs*14	HLA-B57:01	KSPSLQTQWRL	0.9991	0.9743	1.8454	479.5	0.725	71.68	1/888	2/7086
INDEL	Breast	PAXBP1_L629Sfs*43	HLA-C12:02	FSSSLGLLL	0.9179	0.9723	0.4183	36.6	0.0362	12.81	1/888	1/7086
INDEL	Breast	PAXBP1_L629Sfs*43	HLA-C12:02	LLRQNVVTL	0.993	0.9725	0.3302	398.7	0.5619	12.81	1/888	1/7086
INDEL	Breast	CABIN1_Q1525Sfs*30	HLA-B57:01	TIRVSTVW	0.9984	0.9787	0.3514	499.3	0.7481	28.08	1/888	1/7086
INDEL	Breast	CABIN1_Q1525Sfs*30	HLA-B57:01	STIRVSTVW	0.9998	0.9676	0.0037	8.3	0.0097	28.08	1/888	1/7086
INDEL	Breast	CABIN1_Q1525Sfs*30	HLA-B57:01	PSTIRVSTVW	0.9993	0.9657	0.8749	30.4	0.0774	28.08	1/888	1/7086
INDEL	Breast	CABIN1_Q1525Sfs*30	HLA-B57:01	FPSTIRVSTVW	0.9988	0.9692	0.3806	126.7	0.2724	28.08	1/888	1/7086
INDEL	Breast	PHKA2_G1160Afs*53	HLA-B57:01	TSIGASSTW	0.9991	0.9777	0.0142	11.3	0.0139	12.78	1/888	1/7086
INDEL	Breast	PHKA2_G1160Afs*53	HLA-B57:01	STWTRSCRW	0.9984	0.9625	0.1354	14.7	0.0234	12.78	1/888	1/7086
INDEL	Breast	PHKA2_G1160Afs*53	HLA-B57:01	RTRCQLVPW	0.9993	0.9676	0.4295	10.3	0.0125	12.78	1/888	1/7086
INDEL	Breast	PHKA2_G1160Afs*53	HLA-C12:02	SATSFMTAL	0.9953	0.9752	0.0495	105.8	0.1283	12.78	1/888	1/7086
INDEL	Breast	PHKA2_G1160Afs*53	HLA-C12:02	FMTALRVGL	0.9833	0.9755	1.726	356.1	0.4999	12.78	1/888	1/7086
INDEL	Breast	PHKA2_G1160Afs*53	HLA-C12:02	MTALRVGLM	0.8903	0.9604	0.7749	294.6	0.4264	12.78	1/888	1/7086
INDEL	Breast	PHKA2_G1160Afs*53	HLA-B57:01	MTSIGASSTW	0.9997	0.9692	0.2227	6	0.0082	12.78	1/888	1/7086
INDEL	Breast	PHKA2_G1160Afs*53	HLA-B57:01	SSTWTRSCRW	0.9993	0.9477	0.4347	23.3	0.0555	12.78	1/888	1/7086
INDEL	Breast	PHKA2_G1160Afs*53	HLA-B57:01	RCQLVPWTPW	0.9962	0.9851	1.0496	270.2	0.4718	12.78	1/888	1/7086
INDEL	Breast	PHKA2_G1160Afs*53	HLA-B57:01	EMTSIGASSTW	0.9951	0.9803	0.1625	38.9	0.1061	12.78	1/888	1/7086
INDEL	Breast	PHKA2_G1160Afs*53	HLA-B57:01	ASSTWTRSCRW	0.9998	0.9426	0.1435	79.8	0.1987	12.78	1/888	1/7086
INDEL	Breast	PHKA2_G1160Afs*53	HLA-B57:01	KTKPQESATSF	0.9999	0.9643	0.0643	464.1	0.7065	12.78	1/888	1/7086
INDEL	Breast	HEPH_S1064Ffs*17	HLA-C12:02	TVFFSNRTL	0.7886	0.9459	0.6038	418.7	0.5887	4.4	1/888	1/7086
INDEL	Breast	DOCK11_N1632Kfs*30	HLA-B57:01	MAKIHVKKW	0.9988	0.9058	0.1775	57.4	0.1524	4.02	1/888	1/7086
INDEL	Breast	DOCK11_N1632Kfs*30	HLA-B57:01	SMAKIHVKKW	0.999	0.8449	0.1656	366.1	0.5909	4.02	1/888	1/7086
INDEL	Breast	AMPD2_E149_P152del	HLA-B57:01	RSAPYEFPI	0.9852	0.9786	1.0576	105.6	0.2397	19.95	1/888	1/7086
INDEL	Breast	USPL1_D329Vfs*14	HLA-B27:09	LRCTLGVCI	0.9927	0.9455	1.0837	337.4	1.0701	10.4	1/888	1/7086
INDEL	Breast	HERC1_F4079Lfs*3	HLA-B57:01	ISALQGLW	0.9998	0.9939	0.4883	69.6	0.1796	7.53	1/888	1/7086
INDEL	Breast	HERC1_F4079Lfs*3	HLA-B57:01	VISALQGLW	0.995	0.9904	0.367	66.8	0.1739	7.53	1/888	1/7086
INDEL	Breast	HERC1_F4079Lfs*3	HLA-B57:01	TVISALQGLW	0.9998	0.9899	0.2727	60.2	0.1591	7.53	1/888	1/7086
INDEL	Breast	HERC1_F4079Lfs*3	HLA-B57:01	LTVISALQGLW	0.9998	0.9914	0.4367	44.5	0.123	7.53	1/888	1/7086
INDEL	Breast	GATA3_A332Gfs*20	HLA-A32:01	TLWRRNGQW	0.9464	0.9921	0.3445	213.7	0.3729	625.61	1/888	1/7086
INDEL	Breast	ZFP36L1_E303Gfs*36	HLA-B07:02	QPQWLRLPDL	0.9675	0.5376	0.7106	8.1	0.0158	181.71	1/888	1/7086
INDEL	Breast	ZFP36L1_E303Gfs*36	HLA-A24:23	KTPAHLQQTF	0.9921	0.6859	1.0678	329.2	1.5506	181.71	1/888	1/7086
INDEL	Breast	ZFP36L1_E303Gfs*36	HLA-A32:01	KTPAHLQQTF	0.9918	0.9554	0.1227	133.2	0.235	181.71	1/888	1/7086
INDEL	Breast	HUWE1_D3932Tfs*35	HLA-A32:01	LTHRSSFAL	0.7253	0.9793	1.1394	496.9	0.7559	62.34	1/888	1/7086
INDEL	Breast	HUWE1_D3932Tfs*35	HLA-A32:01	RSSFALQRL	0.9905	0.9674	0.4196	461.8	0.7116	62.34	1/888	1/7086
INDEL	Breast	HUWE1_D3932Tfs*35	HLA-C07:02	FALQRLTAL	0.9905	0.9851	0.0396	173.3	0.1085	62.34	1/888	1/7086
INDEL	Breast	HUWE1_D3932Tfs*35	HLA-C02:02	FALQRLTAL	0.9976	0.991	0.0131	111.9	0.0479	62.34	1/888	1/7086
INDEL	Breast	HUWE1_D3932Tfs*35	HLA-B07:02	SPHLCTSPQA	0.9591	0.5166	1.6564	72.9	0.2322	62.34	1/888	1/7086
INDEL	Breast	DENND3_R24Efs*44	HLA-B27:05	LRMSPSRAAW	0.9997	0.5765	0.3352	200.3	0.6196	1.61	1/888	1/7086
INDEL	Breast	TLN1_V2431Efs*23	HLA-B27:05	ARSRLTRTR	0.997	0.7108	0.6891	165.7	0.5327	53.54	1/888	1/7086
INDEL	Breast	TLN1_V2431Efs*23	HLA-B27:05	ARSRLTRTRR	0.9987	0.6837	0.8149	291.8	0.8339	53.54	1/888	1/7086
INDEL	Breast	SWI5_W10Rfs*110	HLA-B27:05	GRGRLSLGA	0.9933	0.6692	1.192	383.5	1.025	70.37	1/888	1/7086
INDEL	Breast	SWI5_W10Rfs*110	HLA-B27:05	GRLSLGARA	0.9986	0.7634	0.7226	162.1	0.5233	70.37	1/888	1/7086
INDEL	Breast	SWI5_W10Rfs*110	HLA-B35:01	LSLGARAAF	0.9231	0.9012	0.3898	155.3	0.4187	70.37	1/888	1/7086
INDEL	Breast	SWI5_W10Rfs*110	HLA-B27:05	ARAAFCAPV	0.9982	0.7715	1.2933	112.8	0.3755	70.37	1/888	1/7086
INDEL	Breast	SWI5_W10Rfs*110	HLA-C15:02	ASDPRAQEM	0.996	0.8926	0.1566	384.9	0.4154	70.37	1/888	1/7086
INDEL	Breast	SWI5_W10Rfs*110	HLA-B27:05	QRAVGPIRL	0.9997	0.5337	0.3974	379.6	1.0176	70.37	1/888	1/7086
INDEL	Breast	SWI5_W10Rfs*110	HLA-B27:05	IRLSPRIPL	0.9999	0.8745	0.4698	91	0.3011	70.37	1/888	1/7086
INDEL	Breast	SWI5_W10Rfs*110	HLA-B27:05	GRGRLSLGAR	0.9991	0.596	0.8629	150.9	0.4928	70.37	1/888	1/7086
INDEL	Breast	SWI5_W10Rfs*110	HLA-B27:05	GRLSLGARAA	0.9995	0.7712	0.4563	245.7	0.7353	70.37	1/888	1/7086
INDEL	Breast	SWI5_W10Rfs*110	HLA-B27:05	ARAAFCAPVH	0.9988	0.8902	1.2692	296.9	0.8449	70.37	1/888	1/7086
INDEL	Breast	SWI5_W10Rfs*110	HLA-B27:05	GRLSLGARAAF	1	0.7128	0.1872	71.6	0.238	70.37	1/888	1/7086
INDEL	Breast	FXYD5_Q122Rfs*65	HLA-B35:01	RPSSHLVFM	0.9678	0.6909	0.1098	130.1	0.3758	72.14	1/888	1/7086
INDEL	Breast	FXYD5_Q122Rfs*65	HLA-B27:05	MRMTPSSMM	0.9997	0.7456	0.6949	55.9	0.1826	72.14	1/888	1/7086
INDEL	Breast	FXYD5_Q122Rfs*65	HLA-B35:01	VASAGSCPGY	0.9221	0.8816	1.3273	152.1	0.4126	72.14	1/888	1/7086
INDEL	Breast	SCAF1_A1015Lfs*92	HLA-B35:01	LPEEATEEL	0.9834	0.9595	0.1336	110.3	0.3404	69.54	1/888	1/7086
INDEL	Breast	SCAF1_A1015Lfs*92	HLA-B27:05	KRRRSSSLL	0.9938	0.9464	0.9103	165.4	0.5322	69.54	1/888	1/7086
INDEL	Breast	SCAF1_A1015Lfs*92	HLA-C01:02	LLPPRPPAL	0.9253	0.99	0.0299	290.6	0.0094	69.54	1/888	1/7086
INDEL	Breast	SCAF1_A1015Lfs*92	HLA-B27:05	GRRTGQLPV	0.995	0.5305	0.8771	350.1	0.9579	69.54	1/888	1/7086
INDEL	Breast	SCAF1_A1015Lfs*92	HLA-B27:05	RRSSSLLPPR	0.9998	0.7004	0.4548	30	0.0636	69.54	1/888	1/7086
INDEL	Breast	SCAF1_A1015Lfs*92	HLA-B27:05	RRRSSSLLPPR	0.9997	0.6053	0.7726	64.4	0.213	69.54	1/888	1/7086
INDEL	Breast	OGT_D746_L748del	HLA-C15:02	KAFLPDVKI	0.9979	0.9303	0.2054	417.1	0.4478	37.19	1/888	1/7086
INDEL	Breast	MAP3K1_S588Ffs*3	HLA-B27:05	VREMALRRLF	0.9981	0.6072	1.5432	39.4	0.1063	7.59	1/888	1/7086
INDEL	Breast	MAP3K1_S588Ffs*3	HLA-B41:01	REMALRRLFP	0.767	0.9276	1.1027	462	0.6178	7.59	1/888	1/7086
INDEL	Breast	TP53_R110del	HLA-A02:05	GSYGFLGFL	0.8754	0.6058	0.4967	166.9	1.0406	71.18	1/888	1/7086
INDEL	Breast	TP53_R110del	HLA-A02:05	FLGFLHSGTA	0.9579	0.7599	0.9971	283.5	1.6072	71.18	1/888	1/7086
INDEL	Breast	PPM1B_D309Ifs*62	HLA-B58:01	EAVKKIQSW	0.9717	0.8845	0.0201	346.9	1.1396	36.66	1/888	1/7086
INDEL	Breast	PPM1B_D309Ifs*62	HLA-B58:01	KIQSWISTW	0.9983	0.9516	0.0052	20.5	0.1342	36.66	1/888	1/7086
INDEL	Breast	PPM1B_D309Ifs*62	HLA-C03:02	LARKECLIL	0.9061	0.9912	1.1225	363.9	1.1797	36.66	1/888	1/7086
INDEL	Breast	PPM1B_D309Ifs*62	HLA-B18:01	GEVLLASVM	0.9401	0.9337	0.3461	288.2	0.1911	36.66	1/888	1/7086
INDEL	Breast	PPM1B_D309Ifs*62	HLA-B58:01	LASVMLLKL	0.9474	0.8485	1.1532	162.8	0.6675	36.66	1/888	1/7086
INDEL	Breast	PPM1B_D309Ifs*62	HLA-C03:02	LASVMLLKL	0.9951	0.9647	0.4675	145.9	0.5922	36.66	1/888	1/7086
INDEL	Breast	PPM1B_D309Ifs*62	HLA-B58:01	ASVMLLKLF	0.9964	0.7585	0.719	200.8	0.7788	36.66	1/888	1/7086
INDEL	Breast	PPM1B_D309Ifs*62	HLA-B58:01	KKIQSWISTW	0.9657	0.9614	0.3168	115	0.5244	36.66	1/888	1/7086
INDEL	Breast	PPM1B_D309Ifs*62	HLA-B58:01	MSCASCLQKI	0.9882	0.627	1.3803	208.6	0.8012	36.66	1/888	1/7086
INDEL	Breast	PPM1B_D309Ifs*62	HLA-B58:01	STWNHGLKRLW	0.9994	0.9729	0.1112	32.3	0.2069	36.66	1/888	1/7086
INDEL	Breast	KMT2C_F4754Gfs*29	HLA-C03:02	LTGSAFCSL	0.8476	0.976	1.5343	362.1	1.1761	6.12	1/888	1/7086
INDEL	Breast	KMT2C_F4754Gfs*29	HLA-C03:02	SAFCSLQVI	0.9879	0.9187	0.9203	38.6	0.1863	6.12	1/888	1/7086
INDEL	Breast	KMT2C_F4754Gfs*29	HLA-C03:02	TARNLTGSAF	0.9902	0.9653	0.5213	350.7	1.1534	6.12	1/888	1/7086
INDEL	Breast	AGBL5_S853Tfs*27	HLA-A24:02	PWANLRFVL	0.9746	0.5276	1.0366	206.6	0.3713	54.56	1/888	1/7086
INDEL	Breast	NIF3L1_V121Yfs*9	HLA-C03:04	RALENRYLL	0.9948	0.9852	0.2428	57.7	0.2388	63.58	1/888	1/7086
INDEL	Breast	NIF3L1_V121Yfs*9	HLA-C16:02	RALENRYLL	0.9858	0.9891	0.1285	70.6	0.0372	63.58	1/888	1/7086
INDEL	Breast	NIF3L1_V121Yfs*9	HLA-B44:03	LENRYLLSSY	0.9938	0.9158	0.4491	93.5	0.109	63.58	1/888	1/7086
INDEL	Breast	SEMA4A_L690_F691del	HLA-A02:01	FVTVTVALV	0.9789	0.5225	0.4475	65.1	0.784	13.27	1/888	1/7086
INDEL	Breast	SEMA4A_L690_F691del	HLA-C12:03	FVTVTVALV	0.6636	0.9792	1.4943	141.2	0.6144	13.27	1/888	1/7086
INDEL	Breast	SEMA4A_L690_F691del	HLA-C12:03	VTVTVALVL	0.9715	0.9717	0.555	164.9	0.6977	13.27	1/888	1/7086
INDEL	Breast	SEMA4A_L690_F691del	HLA-C12:03	VALVLSGAL	0.9492	0.9747	0.7594	143.9	0.6248	13.27	1/888	1/7086
INDEL	Breast	TRRAP_Q3172Pfs*21	HLA-C12:03	FVKERPSPA	0.9913	0.9718	0.9762	196.4	0.8119	15.17	1/888	1/7086
INDEL	Breast	AGFG2_F422_L428del	HLA-C03:03	FASSFPAPLV	0.996	0.9922	0.6929	90.6	0.3405	97.37	1/888	1/7086
INDEL	Breast	FOCAD_P1711Qfs*66	HLA-C07:02	RRFSLSFPI	0.9023	0.9207	0.786	176.4	0.1111	4.43	1/888	1/7086
INDEL	Breast	FOCAD_P1711Qfs*66	HLA-C03:03	FSLSFPIAW	0.715	0.9971	0.7986	239.4	0.6313	4.43	1/888	1/7086
INDEL	Breast	FAN1_F552Lfs*55	HLA-B08:01	LLKMKTPL	0.9998	0.5472	0.585	4.9	0.0065	2.17	1/888	1/7086
INDEL	Breast	FAN1_F552Lfs*55	HLA-B08:01	LLLKMKTPL	0.9959	0.7652	0.7456	81.9	0.1445	2.17	1/888	1/7086
INDEL	Breast	FAN1_F552Lfs*55	HLA-B08:01	LLKMKTPLV	0.9967	0.5367	0.6837	40	0.0663	2.17	1/888	1/7086
INDEL	Breast	FAN1_F552Lfs*55	HLA-A24:02	CWSTSAEWSF	0.9908	0.6134	0.6854	202.9	0.3664	2.17	1/888	1/7086
INDEL	Breast	TNRC6C_Q1156Rfs*26	HLA-C07:01	YRCSWHTNV	0.9565	0.8018	0.5534	171.9	0.0663	13.71	1/888	1/7086
INDEL	Breast	TNRC6C_Q1156Rfs*26	HLA-C07:01	SRCYRPSVM	0.9939	0.7451	0.1112	327.2	0.118	13.71	1/888	1/7086
INDEL	Breast	TNRC6C_Q1156Rfs*26	HLA-C07:01	YRCSWHTNVY	0.9973	0.6599	0.4789	300.3	0.1089	13.71	1/888	1/7086
INDEL	Breast	TAF5L_W369Cfs*28	HLA-C07:02	IRYCGSGEF	0.8093	0.9551	0.4789	89.3	0.0484	38.86	1/888	1/7086
INDEL	Breast	TBX3_T290Nfs*37	HLA-B15:01	YQNDKINPV	0.9802	0.9581	1.0576	454.2	1.5944	260.26	1/888	1/7086
INDEL	Breast	TBX3_T290Nfs*37	HLA-C03:04	YQNDKINPV	0.7264	0.9936	1.0705	148.9	0.4666	260.26	1/888	1/7086
INDEL	Breast	TBX3_T290Nfs*37	HLA-B15:01	RQQPFCKRF	0.9921	0.8019	0.0558	234.7	1.0303	260.26	1/888	1/7086
INDEL	Breast	HCAR1_Y278Lfs*52	HLA-C03:04	NSMLDPLVL	0.9971	0.9914	0.2841	76.6	0.3021	77.35	1/888	1/7086
INDEL	Breast	HCAR1_Y278Lfs*52	HLA-C03:04	SMLDPLVLL	0.9833	0.9944	0.4113	432.6	0.9033	77.35	1/888	1/7086
INDEL	Breast	HCAR1_Y278Lfs*52	HLA-B15:01	MLDPLVLLF	0.8738	0.9317	0.0808	478.5	1.6489	77.35	1/888	1/7086
INDEL	Breast	HCAR1_Y278Lfs*52	HLA-B15:01	SMLDPLVLLF	0.997	0.958	0.3302	86.2	0.4608	77.35	1/888	1/7086
INDEL	Breast	NFASC_I278Tfs*55	HLA-B57:01	SAWPPTRW	0.9998	0.9951	0.2464	239.5	0.4336	3.14	1/888	1/7086
INDEL	Breast	NFASC_I278Tfs*55	HLA-B57:01	KTPGSISAW	0.9986	0.9865	0.0084	40.2	0.1104	3.14	1/888	1/7086
INDEL	Breast	NFASC_I278Tfs*55	HLA-B57:01	ISAWPPTRW	0.9998	0.9868	0.0299	18.4	0.035	3.14	1/888	1/7086
INDEL	Breast	NFASC_I278Tfs*55	HLA-B57:01	RKTPGSISAW	0.9946	0.9757	0.1112	138.5	0.2902	3.14	1/888	1/7086
INDEL	Breast	NFASC_I278Tfs*55	HLA-B57:01	SISAWPPTRW	0.9992	0.9732	0.2573	90.2	0.2167	3.14	1/888	1/7086
INDEL	Breast	NFASC_I278Tfs*55	HLA-B57:01	GSISAWPPTRW	1	0.9861	0.1435	48.1	0.132	3.14	1/888	1/7086
INDEL	Breast	CCDC88A_L545Qfs*9	HLA-C12:03	KTIETQRKF	0.6905	0.9739	0.0383	366.7	1.2601	3.22	1/888	1/7086
INDEL	Breast	NCAPH_H24Pfs*36	HLA-A30:01	RGHPPQCLL	0.8201	0.8899	1.2592	429.3	1.8132	12.42	1/888	1/7086
INDEL	Breast	NCAPH_H24Pfs*36	HLA-A02:01	CLLSFRACV	0.9758	0.5031	0.7881	74.8	0.867	12.42	1/888	1/7086
INDEL	Breast	TANGO6_G546del	HLA-C07:02	FRVATQGIM	0.811	0.9096	0.6212	253.8	0.1667	6.95	1/888	1/7086
INDEL	Breast	TANGO6_G546del	HLA-C07:01	FRVATQGIM	0.9935	0.5636	0.6038	181.6	0.0693	6.95	1/888	1/7086
INDEL	Breast	PER3_P339Ifs*34	HLA-B35:01	PPFEHSILY	0.9856	0.6866	0.281	46.6	0.1802	12.86	1/888	1/7086
INDEL	Breast	PER3_P339Ifs*34	HLA-A02:01	RLHHTGFQL	0.9746	0.6203	0.1898	187.4	1.5793	12.86	1/888	1/7086
INDEL	Breast	PER3_P339Ifs*34	HLA-B35:01	HPPFEHSILY	0.9929	0.6539	0.2227	9	0.0317	12.86	1/888	1/7086
INDEL	Breast	PER3_P339Ifs*34	HLA-A02:01	RLHHTGFQLV	0.9834	0.6105	0.5512	209.4	1.6949	12.86	1/888	1/7086
INDEL	Breast	GATA3_D335Gfs*17	HLA-B27:05	RRNANGGPCL	0.9991	0.8443	0.7683	132.3	0.4376	1119.53	1/888	1/7086
INDEL	Breast	CDKN1B_D51Gfs*70	HLA-B27:05	ARVLLQTPA	0.9989	0.6384	0.7247	311	0.8744	95.39	1/888	1/7086
INDEL	Breast	CDKN1B_D51Gfs*70	HLA-B27:05	FRFSESQTPR	0.9998	0.7755	0.1704	62.6	0.2063	95.39	1/888	1/7086
INDEL	Breast	CDKN1B_D51Gfs*70	HLA-B27:05	ARVLLQTPAA	0.9997	0.6976	1.3074	388.8	1.0349	95.39	1/888	1/7086
INDEL	Breast	EFEMP1_A124Efs*51	HLA-A02:05	TLSAFPPTL	0.9923	0.6687	0.1025	154	0.9694	230.21	1/888	1/7086
INDEL	Breast	EFEMP1_A124Efs*51	HLA-B58:01	LSSGGTQLTL	0.9763	0.8503	0.9059	219.9	0.8334	230.21	1/888	1/7086
INDEL	Breast	EFEMP1_A124Efs*51	HLA-A02:05	SAFPPTLPTV	0.9791	0.7801	0.0734	308.7	1.7213	230.21	1/888	1/7086
INDEL	Breast	COL5A2_L1393Pfs*8	HLA-A02:05	FLRLPEHHL	0.951	0.886	0.1418	332.9	1.8183	926.43	1/888	1/7086
INDEL	Breast	COL5A2_L1393Pfs*8	HLA-A02:05	RLPEHHLHL	0.9921	0.7606	0.0356	54	0.3524	926.43	1/888	1/7086
INDEL	Breast	CASP3_K259Hfs*19	HLA-C07:01	FHAHKRTLF	0.6681	0.6284	1.2078	457.7	0.1565	89.99	1/888	1/7086
INDEL	Breast	CASP3_K259Hfs*19	HLA-C07:01	HAHKRTLFL	0.7617	0.5624	0.4246	211	0.0798	89.99	1/888	1/7086
INDEL	Breast	CASP3_K259Hfs*19	HLA-C06:02	HAHKRTLFL	0.9527	0.9833	0.2868	237.2	0.084	89.99	1/888	1/7086
INDEL	Breast	SRRM2_S2244_A2245del	HLA-A68:01	ASAAAMNLAR	0.987	0.6844	0.4409	50.6	0.5498	212.8	1/888	1/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-C03:04	SSLSHISAL	0.9998	0.992	0.1369	12	0.0425	1172.22	1/888	1/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-B14:02	SHISALQPL	0.9899	0.8406	0.2183	308.5	0.0251	1172.22	1/888	1/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-C03:04	HAHADAPAI	0.984	0.9944	0.3413	28	0.1228	1172.22	1/888	1/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-C03:04	MSSLSHISAL	0.9998	0.9889	1.1792	176.1	0.5176	1172.22	1/888	1/7086
INDEL	Breast	TBX3_F219Ifs*8	HLA-C08:02	ISDKHGIYF	0.9993	0.794	0.0142	141.3	0.0144	46.89	1/888	1/7086
INDEL	Breast	THNSL2_L329Sfs*8	HLA-B15:01	RVFWLSLAL	0.7692	0.8767	1.1086	213	0.9582	4.59	1/888	1/7086
INDEL	Breast	THNSL2_L329Sfs*8	HLA-C03:03	RVFWLSLAL	0.8665	0.9879	0.8024	30.8	0.1386	4.59	1/888	1/7086
INDEL	Breast	ANO9_F429Yfs*192	HLA-A02:01	FTLQYPFLV	0.9886	0.5414	0.1014	5.5	0.043	6.17	1/888	1/7086
INDEL	Breast	ANO9_F429Yfs*192	HLA-A02:01	FLVSHLHRL	0.9938	0.6769	0.0187	3.8	0.0161	6.17	1/888	1/7086
INDEL	Breast	ANO9_F429Yfs*192	HLA-B07:02	APGPRAQGL	0.9998	0.6855	0.0523	58.3	0.1938	6.17	1/888	1/7086
INDEL	Breast	ANO9_F429Yfs*192	HLA-B07:02	GPRAQGLAA	0.9995	0.682	0.0481	11.5	0.0315	6.17	1/888	1/7086
INDEL	Breast	ANO9_F429Yfs*192	HLA-B07:02	RAQGLAAQL	0.9665	0.6943	0.6635	348.3	0.6768	6.17	1/888	1/7086
INDEL	Breast	ANO9_F429Yfs*192	HLA-B07:02	GPVGDPQVPL	0.9379	0.693	0.5924	169.6	0.4229	6.17	1/888	1/7086
INDEL	Breast	ANO9_F429Yfs*192	HLA-A03:01	RVRAPAPGPR	0.9406	0.5271	0.5312	128.5	0.4517	6.17	1/888	1/7086
INDEL	Breast	ANO9_F429Yfs*192	HLA-B07:02	LPAGAAARAL	0.9991	0.5534	0.0315	14.3	0.0444	6.17	1/888	1/7086
INDEL	Breast	ANO9_F429Yfs*192	HLA-B13:02	CQWDGHCLHI	0.8943	0.792	0.6556	378	0.0471	6.17	1/888	1/7086
INDEL	Breast	ANO9_F429Yfs*192	HLA-B07:02	VPRQRLHDGPL	0.9998	0.621	0.704	20.4	0.0711	6.17	1/888	1/7086
INDEL	Breast	ANO9_F429Yfs*192	HLA-B07:02	APAPGPRAQGL	1	0.6351	0.1448	88.9	0.2715	6.17	1/888	1/7086
INDEL	Breast	ANO9_F429Yfs*192	HLA-B07:02	APGPRAQGLAA	0.9999	0.675	0.1255	65.3	0.2121	6.17	1/888	1/7086
INDEL	Breast	ANO9_F429Yfs*192	HLA-B07:02	GPRAQGLAAQL	1	0.7694	0.2793	17.5	0.0604	6.17	1/888	1/7086
INDEL	Breast	FADS1_C464_E470del	HLA-A02:01	SLYQSKPLL	0.977	0.7289	0.0835	176.1	1.5207	16.93	1/888	1/7086
INDEL	Breast	TP53_C275Lfs*67	HLA-B07:02	RISARKGSL	0.9834	0.7062	1.1	82	0.2544	61	1/888	1/7086
INDEL	Breast	TP53_C275Lfs*67	HLA-A02:01	ALSEHCPTT	0.8225	0.6134	0.6911	220.7	1.7511	61	1/888	1/7086
INDEL	Breast	TP53_C275Lfs*67	HLA-C07:02	HWMENISPF	0.7218	0.9419	0.5144	334.9	0.2219	61	1/888	1/7086
INDEL	Breast	TP53_C275Lfs*67	HLA-A03:01	VLGETGAQRK	0.9806	0.5446	1.182	395	1.0315	61	1/888	1/7086
INDEL	Breast	TP53_C275Lfs*67	HLA-B07:02	SPFRSVGVSA	0.9983	0.5998	0.0214	30.9	0.1109	61	1/888	1/7086
INDEL	Breast	TP53_C275Lfs*67	HLA-A03:01	RVLGETGAQRK	0.9994	0.7756	0.3529	333.6	0.9189	61	1/888	1/7086
INDEL	Breast	ATIC_F237Ifs*45	HLA-B44:03	GEGTQGGFRY	0.9982	0.8938	0.1354	266.5	0.2728	81.79	1/888	1/7086
INDEL	Breast	PIBF1_S559Ffs*7	HLA-B44:03	DEAERVLFF	0.9969	0.9305	0.0166	217	0.2298	9.04	1/888	1/7086
INDEL	Breast	SFI1_Y322Sfs*70	HLA-B07:02	RPGSGGRAC	0.9905	0.7187	0.5982	67.7	0.2188	10.53	1/888	1/7086
INDEL	Breast	SFI1_Y322Sfs*70	HLA-A02:01	GTASCIFAL	0.9048	0.6763	0.4769	142.9	1.3346	10.53	1/888	1/7086
INDEL	Breast	SFI1_Y322Sfs*70	HLA-B07:02	RPGSGGRACTL	1	0.6489	0.3717	41	0.1441	10.53	1/888	1/7086
INDEL	Breast	SFI1_Y322Sfs*70	HLA-B07:02	WPGRWPCGAPL	0.9998	0.7681	0.834	66.9	0.2166	10.53	1/888	1/7086
INDEL	Breast	USP34_L2536del	HLA-C16:01	TSQTDMAAL	0.5211	0.9856	0.9103	313.3	0.9732	9.11	1/888	1/7086
INDEL	Breast	GATA3_M442Ifs*65	HLA-C15:05	SSMVTAIGL	0.998	0.903	0.4967	271	0.1721	1203.73	1/888	1/7086
INDEL	Breast	GATA3_M442Ifs*65	HLA-C16:01	SSMVTAIGL	0.9318	0.9758	0.6996	38.2	0.1133	1203.73	1/888	1/7086
INDEL	Breast	JTB_N91Mfs*10	HLA-C03:04	MSSKAAAQL	0.9997	0.9845	0.4825	25.9	0.1138	194.97	1/888	1/7086
INDEL	Breast	DHRS11_Q87Tfs*4	HLA-C03:04	FSAIRSTAV	0.9869	0.986	0.3268	16.9	0.0697	5.04	1/888	1/7086
INDEL	Breast	IFNLR1_G168Efs*69	HLA-B07:02	RPYFQSLPM	0.999	0.562	0.2699	4.2	0.0081	1.53	1/888	1/7086
INDEL	Breast	IFNLR1_G168Efs*69	HLA-B15:17	QSRSLSSQL	0.893	0.7773	1.2692	140.5	1.5274	1.53	1/888	1/7086
INDEL	Breast	IFNLR1_G168Efs*69	HLA-B15:17	VSRNTASSL	0.944	0.8843	0.8361	32	0.5254	1.53	1/888	1/7086
INDEL	Breast	IFNLR1_G168Efs*69	HLA-C03:03	VSRNTASSL	0.994	0.9893	0.6212	187.2	0.5397	1.53	1/888	1/7086
INDEL	Breast	IFNLR1_G168Efs*69	HLA-C07:01	WRSQKPTGL	0.983	0.703	0.5779	70	0.0223	1.53	1/888	1/7086
INDEL	Breast	IFNLR1_G168Efs*69	HLA-B15:17	SSLSPPASCW	0.9977	0.9612	0.296	26.1	0.432	1.53	1/888	1/7086
INDEL	Breast	IFNLR1_G168Efs*69	HLA-B15:17	RSQKPTGLSW	0.9977	0.9628	0.0142	9	0.1129	1.53	1/888	1/7086
INDEL	Breast	REPS1_H112Vfs*23	HLA-B15:17	VVFWCNSPTTW	0.998	0.9211	0.8149	38.9	0.6212	16.4	1/888	1/7086
INDEL	Breast	GTSE1_V75Ffs*69	HLA-B15:17	KTLGARAW	0.996	0.986	0.5657	77.5	1.049	19.21	1/888	1/7086
INDEL	Breast	GTSE1_V75Ffs*69	HLA-B15:17	ASLELNNPF	0.9927	0.9626	0.5328	20.1	0.3308	19.21	1/888	1/7086
INDEL	Breast	GTSE1_V75Ffs*69	HLA-C03:03	ASLELNNPF	0.9902	0.9954	1.0678	212	0.5845	19.21	1/888	1/7086
INDEL	Breast	GTSE1_V75Ffs*69	HLA-C07:01	LRVPLPGAL	0.9825	0.8159	0.3593	180.5	0.069	19.21	1/888	1/7086
INDEL	Breast	GTSE1_V75Ffs*69	HLA-B15:17	RVPLPGALW	0.9744	0.8733	0.1098	16.2	0.259	19.21	1/888	1/7086
INDEL	Breast	GTSE1_V75Ffs*69	HLA-B15:17	ALWPGRSSW	0.9692	0.9786	0.0131	128.3	1.4514	19.21	1/888	1/7086
INDEL	Breast	GTSE1_V75Ffs*69	HLA-B15:17	SSWRCTKKL	0.9267	0.8843	0.5347	174.5	1.7386	19.21	1/888	1/7086
INDEL	Breast	GTSE1_V75Ffs*69	HLA-C07:01	TRQPKLPSL	0.9991	0.6581	0.2396	118.5	0.0466	19.21	1/888	1/7086
INDEL	Breast	GTSE1_V75Ffs*69	HLA-B07:02	HLRVPLPGAL	0.9808	0.6637	1.3988	437	0.7697	19.21	1/888	1/7086
INDEL	Breast	GTSE1_V75Ffs*69	HLA-B15:17	GALWPGRSSW	0.9952	0.9686	0.2089	61.9	0.9087	19.21	1/888	1/7086
INDEL	Breast	GTSE1_V75Ffs*69	HLA-B15:17	SSWRCTKKLTY	0.9963	0.8054	1.5385	119.3	1.3941	19.21	1/888	1/7086
INDEL	Breast	GATA3_F430Wfs*76	HLA-A02:01	SLSWTTPPL	0.9796	0.6665	0.2009	23.6	0.3239	2101.21	1/888	1/7086
INDEL	Breast	GATA3_F430Wfs*76	HLA-C03:03	SLSWTTPPL	0.8278	0.9854	1.4399	224.7	0.606	2101.21	1/888	1/7086
INDEL	Breast	SLIT2_C478Ffs*19	HLA-C03:02	FQLKNSISF	0.8815	0.95	0.3254	18.5	0.0781	2.38	1/888	1/7086
INDEL	Breast	SLIT2_C478Ffs*19	HLA-B58:01	ISFQVQKII	0.985	0.57	1.2465	303.1	1.0493	2.38	1/888	1/7086
INDEL	Breast	PSIP1_L53Ffs*13	HLA-B39:01	FRTKGYISL	0.9988	0.8926	0.3352	17.4	0.0102	13.73	1/888	1/7086
INDEL	Breast	PSIP1_L53Ffs*13	HLA-B14:01	FRTKGYISL	0.9968	0.6051	0.267	492.2	0.0394	13.73	1/888	1/7086
INDEL	Breast	PSIP1_L53Ffs*13	HLA-C07:02	FRTKGYISL	0.988	0.9396	0.2464	41.3	0.0165	13.73	1/888	1/7086
INDEL	Breast	PSIP1_L53Ffs*13	HLA-A32:01	RTKGYISLL	0.9885	0.9159	0.0875	76.5	0.1416	13.73	1/888	1/7086
INDEL	Breast	PSIP1_L53Ffs*13	HLA-C07:02	FRTKGYISLL	0.9937	0.9417	1.2493	285.8	0.188	13.73	1/888	1/7086
INDEL	Breast	PHF20L1_I768Mfs*14	HLA-C12:03	YSHLNAKKM	0.6151	0.9852	0.5165	52.8	0.2355	5.07	1/888	1/7086
INDEL	Breast	PHF20L1_I768Mfs*14	HLA-C12:03	NAKKMSMVL	0.9639	0.9847	0.5829	208	0.8485	5.07	1/888	1/7086
INDEL	Breast	KMT2D_L3220Wfs*9	HLA-B18:01	FELESGAWW	0.9647	0.9321	1.2828	400.9	0.2489	9.07	1/888	1/7086
INDEL	Breast	TP53_T211Lfs*36	HLA-C05:01	YLDDRNLF	1	0.8371	0.2699	371.8	0.1526	12.92	1/888	1/7086
INDEL	Breast	TP53_T211Lfs*36	HLA-C05:01	YLDDRNLFDI	0.9997	0.8696	0.2896	121.9	0.0652	12.92	1/888	1/7086
INDEL	Breast	PGR_E596Gfs*13	HLA-B08:01	RAMGRAAQL	0.9926	0.7495	0.3753	109.5	0.1941	14.26	1/888	1/7086
INDEL	Breast	CDH1_P708Lfs*14	HLA-A32:01	LQILPFWGF	0.7068	0.8803	1.3493	413.9	0.6492	11.4	2/888	2/7086
INDEL	Breast	CDH1_P708Lfs*14	HLA-A32:01	LQILPFWGF	0.7068	0.8803	1.3493	413.9	0.6492	11.4	2/888	2/7086
INDEL	Breast	OBSL1_S609Lfs*64	HLA-A02:01	VVFHGLLTL	0.8943	0.7275	0.148	134.3	1.279	7.7	1/888	1/7086
INDEL	Breast	OBSL1_S609Lfs*64	HLA-C15:02	VVFHGLLTL	0.9969	0.9792	0.1761	446.5	0.4753	7.7	1/888	1/7086
INDEL	Breast	OBSL1_S609Lfs*64	HLA-A33:01	QLAWWQVWR	0.9157	0.6208	0.4153	78.7	0.2196	7.7	1/888	1/7086
INDEL	Breast	OBSL1_S609Lfs*64	HLA-C15:02	SSRVPGSLM	0.9721	0.8644	0.7247	272.7	0.2952	7.7	1/888	1/7086
INDEL	Breast	OBSL1_S609Lfs*64	HLA-A02:01	SLMGKSSRV	0.9888	0.7647	0.0962	36.1	0.4755	7.7	1/888	1/7086
INDEL	Breast	CCDC132_H637Sfs*35	HLA-C16:02	IAFDVISCL	0.9756	0.9836	0.2239	180.3	0.1571	1.17	1/888	1/7086
INDEL	Breast	CCDC132_H637Sfs*35	HLA-A24:02	QYIPFLVGMI	0.9915	0.5907	0.4382	208.6	0.3739	1.17	1/888	1/7086
INDEL	Breast	SIK3_D348Afs*26	HLA-C16:02	RTDTAVIKI	0.9699	0.9725	0.0255	358.5	0.3657	1.89	1/888	1/7086
INDEL	Breast	EPHB2_Q507Rfs*22	HLA-B58:01	YVFRCGHAPW	0.9964	0.9901	1.9404	20.2	0.1317	2.36	1/888	1/7086
INDEL	Breast	MAGED2_A460Cfs*29	HLA-B15:01	SVPRGDGSGF	0.9922	0.6118	0.9621	467.7	1.6242	174.48	1/888	1/7086
INDEL	Breast	SYNGR2_V34Rfs*13	HLA-C16:01	RAVCLRLRL	0.9654	0.9816	0.7267	59.7	0.202	219.65	1/888	1/7086
INDEL	Breast	SYNGR2_V34Rfs*13	HLA-C06:02	LRLDRVLLHL	0.9433	0.9979	0.6352	255.9	0.0895	219.65	1/888	1/7086
INDEL	Breast	SYNGR2_V34Rfs*13	HLA-B57:01	RLDRVLLHLW	0.9997	0.9872	0.1793	338.4	0.5576	219.65	1/888	1/7086
INDEL	Breast	MED23_W1092Cfs*32	HLA-B08:01	LPMLSMLL	0.9845	0.9398	1.8985	268.1	0.4585	9.6	1/888	1/7086
INDEL	Breast	CDH1_V365Tfs*26	HLA-B08:01	IPPRTRVRCL	0.8458	0.6293	1.6082	155.2	0.2764	29.61	1/888	1/7086
INDEL	Breast	PHLPP2_G642Afs*24	HLA-C15:02	LVAPAPANL	0.9989	0.9339	0.348	207	0.2261	3.89	1/888	1/7086
INDEL	Breast	PHLPP2_G642Afs*24	HLA-A02:11	NLAPCKQSV	0.8837	0.6995	0.2165	33.2	1.458	3.89	1/888	1/7086
INDEL	Breast	IQGAP3_Q1214_A1224del	HLA-C03:04	VAFSGQSQHL	0.9998	0.9514	0.1302	306.1	0.7317	41.06	1/888	1/7086
INDEL	Breast	RABGAP1L_S212Tfs*36	HLA-A02:01	RISDTCFLL	0.9848	0.6499	0.0979	85.7	0.9551	13.32	1/888	1/7086
INDEL	Breast	AMT_P236_G239del	HLA-C03:04	VAVHLATAI	0.9972	0.989	0.1886	11.9	0.0421	2.52	1/888	1/7086
INDEL	Breast	AMT_P236_G239del	HLA-C03:04	VAVHLATAIL	0.9993	0.9877	1.0678	343	0.7811	2.52	1/888	1/7086
INDEL	Breast	AMT_P236_G239del	HLA-B40:01	GEDGVEISVAV	0.9974	0.9536	1.0341	321.3	0.5346	2.52	1/888	1/7086
INDEL	Breast	RARRES1_R109Qfs*12	HLA-C03:04	HVVFSTEQL	0.9981	0.9749	0.4718	303.7	0.7284	55.74	1/888	1/7086
INDEL	Breast	PRLR_M232Cfs*14	HLA-A02:01	WLSFLLSSV	0.992	0.6458	0.1963	7.2	0.0704	59.24	1/888	1/7086
INDEL	Breast	LENG9_D282Pfs*15	HLA-C03:04	LANRAPHIL	0.9994	0.9882	0.3866	28.2	0.1237	13.71	1/888	1/7086
INDEL	Breast	NR1I3_L243Ffs*20	HLA-A02:01	FQVEFFGVA	0.9842	0.6907	0.7456	96.6	1.0358	2.7	2/888	2/7086
INDEL	Breast	NR1I3_L243Ffs*20	HLA-A02:01	FQVEFFGVA	0.9842	0.6907	0.7456	96.6	1.0358	2.7	2/888	2/7086
INDEL	Breast	NR1I3_L243Ffs*20	HLA-A02:01	FQVEFFGVAL	0.9786	0.5311	1.1763	98.9	1.0509	2.7	2/888	2/7086
INDEL	Breast	NR1I3_L243Ffs*20	HLA-A02:01	FQVEFFGVAL	0.9786	0.5311	1.1763	98.9	1.0509	2.7	2/888	2/7086
INDEL	Breast	DENND1B_N615Lfs*12	HLA-B44:02	SENLKPGFPLW	0.9998	0.5693	0.1255	34.1	0.0393	14.31	1/888	1/7086
INDEL	Breast	TMEM81_R179delinsSIPQIQL	HLA-A02:01	GLSIPQIQLV	0.9691	0.6305	0.9942	109.6	1.1207	9.86	2/888	2/7086
INDEL	Breast	TMEM81_R179delinsSIPQIQL	HLA-A02:01	GLSIPQIQLV	0.9691	0.6305	0.9942	109.6	1.1207	9.86	2/888	2/7086
INDEL	Breast	LYST_K1381Vfs*10	HLA-A02:01	LLLGILVKL	0.9877	0.5215	0.0282	20.8	0.2841	10.68	2/888	2/7086
INDEL	Breast	LYST_K1381Vfs*10	HLA-A02:01	LLLGILVKL	0.9877	0.5215	0.0282	20.8	0.2841	10.68	2/888	2/7086
INDEL	Breast	LYST_K1381Vfs*10	HLA-A02:01	ILLLGILVKL	0.9692	0.5283	0.6854	68.6	0.8153	10.68	2/888	2/7086
INDEL	Breast	LYST_K1381Vfs*10	HLA-A02:01	ILLLGILVKL	0.9692	0.5283	0.6854	68.6	0.8153	10.68	2/888	2/7086
INDEL	Breast	HADHA_I376_A377insCSLELLGTSDPS	HLA-A02:01	LMGAGICSL	0.9587	0.5976	0.4614	62.2	0.7547	147.67	2/888	2/7086
INDEL	Breast	HADHA_I376_A377insCSLELLGTSDPS	HLA-A02:01	LMGAGICSL	0.9587	0.5976	0.4614	62.2	0.7547	147.67	2/888	2/7086
INDEL	Breast	HADHA_I376_A377insCSLELLGTSDPS	HLA-A02:01	GLMGAGICSL	0.9917	0.5926	0.1977	22.1	0.3028	147.67	2/888	2/7086
INDEL	Breast	HADHA_I376_A377insCSLELLGTSDPS	HLA-A02:01	GLMGAGICSL	0.9917	0.5926	0.1977	22.1	0.3028	147.67	2/888	2/7086
INDEL	Breast	ALMS1_S3549delinsRD	HLA-A02:01	SLRDINVNL	0.8924	0.6154	0.0697	115	1.1573	12.45	2/888	2/7086
INDEL	Breast	ALMS1_S3549delinsRD	HLA-A02:01	SLRDINVNL	0.8924	0.6154	0.0697	115	1.1573	12.45	2/888	2/7086
INDEL	Breast	PLA2R1_K445Vfs*11	HLA-A02:01	GLSSNVCPL	0.9675	0.5942	0.5213	78.6	0.8966	6.6	2/888	2/7086
INDEL	Breast	PLA2R1_K445Vfs*11	HLA-A02:01	GLSSNVCPL	0.9675	0.5942	0.5213	78.6	0.8966	6.6	2/888	2/7086
INDEL	Breast	GALNT3_L201Sfs*5	HLA-B39:06	FHNEAWSTS	0.9918	0.8518	1.0292	369.7	0.1678	34.92	1/888	1/7086
INDEL	Breast	IKZF2_D57Efs*6	HLA-B44:02	LEMQSEMSW	0.9992	0.6118	0.3217	10.1	0.008	5.36	1/888	1/7086
INDEL	Breast	FLNB_G531Dfs*42	HLA-A02:01	VLGALGSMV	0.9512	0.7308	0.6572	181.6	1.5498	23.14	2/888	11/7086
INDEL	Breast	FLNB_G531Dfs*42	HLA-A02:01	VLGALGSMV	0.9512	0.7308	0.6572	181.6	1.5498	23.14	2/888	11/7086
INDEL	Breast	FLNB_G531Dfs*42	HLA-A02:01	SVLGALGSMV	0.965	0.6613	1.3034	235	1.8209	23.14	2/888	11/7086
INDEL	Breast	FLNB_G531Dfs*42	HLA-A02:01	SVLGALGSMV	0.965	0.6613	1.3034	235	1.8209	23.14	2/888	11/7086
INDEL	Breast	FLNB_G531Dfs*42	HLA-A02:01	VLGALGSMVGL	0.9327	0.5325	1.1249	227.3	1.782	23.14	2/888	11/7086
INDEL	Breast	FLNB_G531Dfs*42	HLA-A02:01	VLGALGSMVGL	0.9327	0.5325	1.1249	227.3	1.782	23.14	2/888	11/7086
INDEL	Breast	COL6A6_F1995Hfs*33	HLA-A02:01	ALLDHHPRA	0.9966	0.705	0.1168	66.8	0.7997	1.04	2/888	2/7086
INDEL	Breast	COL6A6_F1995Hfs*33	HLA-A02:01	ALLDHHPRA	0.9966	0.705	0.1168	66.8	0.7997	1.04	2/888	2/7086
INDEL	Breast	COL6A6_F1995Hfs*33	HLA-B39:06	CHWRPGGPI	0.9888	0.9353	0.9405	168	0.0753	1.04	1/888	1/7086
INDEL	Breast	P2RY13_D349_N350insDGVASLLLKIIFGSQTD	HLA-C05:01	QTDDGVASL	0.9999	0.9808	0.0344	61.6	0.0345	32.95	2/888	2/7086
INDEL	Breast	P2RY13_D349_N350insDGVASLLLKIIFGSQTD	HLA-C05:01	QTDDGVASL	0.9999	0.9808	0.0344	61.6	0.0345	32.95	2/888	2/7086
INDEL	Breast	MECOM_G614Efs*30	HLA-A02:01	SMQDPLLSL	0.98	0.5476	0.2428	35.7	0.4713	2.43	2/888	6/7086
INDEL	Breast	MECOM_G614Efs*30	HLA-A02:01	SMQDPLLSL	0.98	0.5476	0.2428	35.7	0.4713	2.43	2/888	6/7086
INDEL	Breast	KIAA0232_F1070Hfs*15	HLA-C05:01	YSDLRTAL	1	0.8889	0.0383	353	0.1469	17.89	2/888	2/7086
INDEL	Breast	KIAA0232_F1070Hfs*15	HLA-C05:01	YSDLRTAL	1	0.8889	0.0383	353	0.1469	17.89	2/888	2/7086
INDEL	Breast	KIAA0232_F1070Hfs*15	HLA-B39:06	HRWYSDLRTAL	0.9997	0.7171	1.1086	381.7	0.1748	17.89	1/888	1/7086
INDEL	Breast	CORIN_N850Rfs*15	HLA-A02:01	MLQFGKWCL	0.9623	0.6064	0.9336	54.2	0.6728	1.09	2/888	2/7086
INDEL	Breast	CORIN_N850Rfs*15	HLA-A02:01	MLQFGKWCL	0.9623	0.6064	0.9336	54.2	0.6728	1.09	2/888	2/7086
INDEL	Breast	CORIN_N850Rfs*15	HLA-B44:02	RERMLQFGKW	0.9858	0.5275	0.4718	22.2	0.0174	1.09	1/888	1/7086
INDEL	Breast	CORIN_N850Rfs*15	HLA-A02:01	RMLQFGKWCL	0.9587	0.5599	0.6837	118.5	1.1798	1.09	2/888	2/7086
INDEL	Breast	CORIN_N850Rfs*15	HLA-A02:01	RMLQFGKWCL	0.9587	0.5599	0.6837	118.5	1.1798	1.09	2/888	2/7086
INDEL	Breast	TEC_G195_H196insQNIKFNFPQGQNNHIK	HLA-B39:06	NHIKHDLRL	0.9962	0.6937	0.0267	66.1	0.021	2.83	1/888	1/7086
INDEL	Breast	PLK4_M837delinsRVLLSLFHLCHLQSL	HLA-A02:01	RVLLSLFHL	0.9587	0.8306	0.5829	103.8	1.0822	12.83	2/888	2/7086
INDEL	Breast	PLK4_M837delinsRVLLSLFHLCHLQSL	HLA-A02:01	RVLLSLFHL	0.9587	0.8306	0.5829	103.8	1.0822	12.83	2/888	2/7086
INDEL	Breast	PLK4_M837delinsRVLLSLFHLCHLQSL	HLA-B39:06	FHLCHLQSL	0.9992	0.9085	0.4698	21.4	0.0084	12.83	1/888	1/7086
INDEL	Breast	PLK4_M837delinsRVLLSLFHLCHLQSL	HLA-A02:01	HLCHLQSLV	0.9896	0.7608	0.356	170.7	1.4921	12.83	2/888	2/7086
INDEL	Breast	PLK4_M837delinsRVLLSLFHLCHLQSL	HLA-A02:01	HLCHLQSLV	0.9896	0.7608	0.356	170.7	1.4921	12.83	2/888	2/7086
INDEL	Breast	PLK4_M837delinsRVLLSLFHLCHLQSL	HLA-A02:01	LLSLFHLCHL	0.9477	0.5976	0.834	107	1.1022	12.83	2/888	2/7086
INDEL	Breast	PLK4_M837delinsRVLLSLFHLCHLQSL	HLA-A02:01	LLSLFHLCHL	0.9477	0.5976	0.834	107	1.1022	12.83	2/888	2/7086
INDEL	Breast	PLK4_M837delinsRVLLSLFHLCHLQSL	HLA-B39:06	FHLCHLQSLV	0.9977	0.9423	1.8644	251.2	0.1139	12.83	1/888	1/7086
INDEL	Breast	SH3RF1_C138Afs*80	HLA-A02:01	SMAFSPPTL	0.9637	0.5515	0.2183	87.7	0.9713	15.94	2/888	2/7086
INDEL	Breast	SH3RF1_C138Afs*80	HLA-A02:01	SMAFSPPTL	0.9637	0.5515	0.2183	87.7	0.9713	15.94	2/888	2/7086
INDEL	Breast	CCDC110_R660Nfs*43	HLA-A02:01	FLMPKPDKL	0.9956	0.6835	0.0014	6.2	0.052	1.14	2/888	2/7086
INDEL	Breast	CCDC110_R660Nfs*43	HLA-A02:01	FLMPKPDKL	0.9956	0.6835	0.0014	6.2	0.052	1.14	2/888	2/7086
INDEL	Breast	CCDC110_R660Nfs*43	HLA-C05:01	FLMPKPDKL	0.9762	0.9265	0.0601	359.9	0.1488	1.14	2/888	2/7086
INDEL	Breast	CCDC110_R660Nfs*43	HLA-C05:01	FLMPKPDKL	0.9762	0.9265	0.0601	359.9	0.1488	1.14	2/888	2/7086
INDEL	Breast	CCDC110_R660Nfs*43	HLA-A02:01	KLWKEKLRI	0.961	0.8047	0.1014	108.8	1.1149	1.14	2/888	2/7086
INDEL	Breast	CCDC110_R660Nfs*43	HLA-A02:01	KLWKEKLRI	0.961	0.8047	0.1014	108.8	1.1149	1.14	2/888	2/7086
INDEL	Breast	RASGRF2_P728Tfs*83	HLA-A02:01	AVFDFSLEL	0.9859	0.639	0.0948	12.7	0.1535	1.8	2/888	2/7086
INDEL	Breast	RASGRF2_P728Tfs*83	HLA-A02:01	AVFDFSLEL	0.9859	0.639	0.0948	12.7	0.1535	1.8	2/888	2/7086
INDEL	Breast	RASGRF2_P728Tfs*83	HLA-B39:06	HHHPESRCV	0.998	0.7818	0.4382	476.9	0.2127	1.8	1/888	1/7086
INDEL	Breast	PJA2_G214_L215insSFMSMYS	HLA-A02:01	SMYSLSPPV	0.9942	0.557	0.1581	4.5	0.0242	118.51	2/888	2/7086
INDEL	Breast	PJA2_G214_L215insSFMSMYS	HLA-A02:01	SMYSLSPPV	0.9942	0.557	0.1581	4.5	0.0242	118.51	2/888	2/7086
INDEL	Breast	FEM1C_F354Lfs*44	HLA-B39:06	MHQPMEVCF	0.9876	0.7835	0.1086	346.5	0.1536	24.38	1/888	1/7086
INDEL	Breast	FEM1C_F354Lfs*44	HLA-C05:01	YADSGNLQTM	1	0.9349	0.057	53.6	0.031	24.38	2/888	2/7086
INDEL	Breast	FEM1C_F354Lfs*44	HLA-C05:01	YADSGNLQTM	1	0.9349	0.057	53.6	0.031	24.38	2/888	2/7086
INDEL	Breast	DOCK2_R749Lfs*13	HLA-A02:01	CLVEDIIFTA	0.9953	0.566	0.4986	58.8	0.7193	31.96	2/888	2/7086
INDEL	Breast	DOCK2_R749Lfs*13	HLA-A02:01	CLVEDIIFTA	0.9953	0.566	0.4986	58.8	0.7193	31.96	2/888	2/7086
INDEL	Breast	FAM135A_H256Lfs*53	HLA-A02:01	SLQGIAQLL	0.9736	0.6163	0.4675	132.5	1.2685	8.13	2/888	2/7086
INDEL	Breast	FAM135A_H256Lfs*53	HLA-A02:01	SLQGIAQLL	0.9736	0.6163	0.4675	132.5	1.2685	8.13	2/888	2/7086
INDEL	Breast	FAM135A_H256Lfs*53	HLA-A02:01	RLSLQGIAQL	0.9457	0.5316	0.9495	217.5	1.7353	8.13	2/888	2/7086
INDEL	Breast	FAM135A_H256Lfs*53	HLA-A02:01	RLSLQGIAQL	0.9457	0.5316	0.9495	217.5	1.7353	8.13	2/888	2/7086
INDEL	Breast	COL12A1_V1305delinsGKGTSLSHLYHSLDPQCCL	HLA-A02:01	SLSHLYHSL	0.9741	0.6358	0.0109	34.7	0.4593	77.16	2/888	2/7086
INDEL	Breast	COL12A1_V1305delinsGKGTSLSHLYHSLDPQCCL	HLA-A02:01	SLSHLYHSL	0.9741	0.6358	0.0109	34.7	0.4593	77.16	2/888	2/7086
INDEL	Breast	COL12A1_V1305delinsGKGTSLSHLYHSLDPQCCL	HLA-A02:01	SLDPQCCLL	0.9229	0.6176	0.5365	103.5	1.0802	77.16	2/888	2/7086
INDEL	Breast	COL12A1_V1305delinsGKGTSLSHLYHSLDPQCCL	HLA-A02:01	SLDPQCCLL	0.9229	0.6176	0.5365	103.5	1.0802	77.16	2/888	2/7086
INDEL	Breast	COL12A1_V1305delinsGKGTSLSHLYHSLDPQCCL	HLA-C05:01	SLDPQCCLL	0.9997	0.885	0.3235	108.9	0.0588	77.16	2/888	2/7086
INDEL	Breast	COL12A1_V1305delinsGKGTSLSHLYHSLDPQCCL	HLA-C05:01	SLDPQCCLL	0.9997	0.885	0.3235	108.9	0.0588	77.16	2/888	2/7086
INDEL	Breast	COL12A1_V1305delinsGKGTSLSHLYHSLDPQCCL	HLA-B39:06	YHSLDPQCCL	0.9909	0.7637	1.3915	173.5	0.0792	77.16	1/888	1/7086
INDEL	Breast	PHIP_D1728delinsGFEKSY	HLA-A02:01	YLLVPASVKV	0.9933	0.6045	0.3445	15.5	0.1918	24.02	2/888	2/7086
INDEL	Breast	PHIP_D1728delinsGFEKSY	HLA-A02:01	YLLVPASVKV	0.9933	0.6045	0.3445	15.5	0.1918	24.02	2/888	2/7086
INDEL	Breast	MDN1_K4761Sfs*28	HLA-A02:01	ILLHNTWAI	0.987	0.7365	0.167	3.1	0.0094	15.81	2/888	2/7086
INDEL	Breast	MDN1_K4761Sfs*28	HLA-A02:01	ILLHNTWAI	0.987	0.7365	0.167	3.1	0.0094	15.81	2/888	2/7086
INDEL	Breast	MDN1_K4761Sfs*28	HLA-B39:06	LHNTWAISM	0.9959	0.8566	0.4246	92.3	0.0338	15.81	1/888	1/7086
INDEL	Breast	MDN1_K4761Sfs*28	HLA-A02:01	FILLHNTWAI	0.9821	0.5164	0.7573	3.5	0.0128	15.81	2/888	2/7086
INDEL	Breast	MDN1_K4761Sfs*28	HLA-A02:01	FILLHNTWAI	0.9821	0.5164	0.7573	3.5	0.0128	15.81	2/888	2/7086
INDEL	Breast	ASF1A_K159Nfs*35	HLA-B39:06	SHFFQQMHYL	0.9949	0.7227	0.8833	170.7	0.0772	38.64	1/888	1/7086
INDEL	Breast	RNF146_H46Qfs*26	HLA-A02:01	QQFQSVCPV	0.8591	0.5327	0.5706	100	1.0581	31.4	2/888	2/7086
INDEL	Breast	RNF146_H46Qfs*26	HLA-A02:01	QQFQSVCPV	0.8591	0.5327	0.5706	100	1.0581	31.4	2/888	2/7086
INDEL	Breast	SF3B5_G45_H46insSLTQT	HLA-B39:06	THFDLLNYFA	0.9967	0.6814	0.5077	491.5	0.2194	241.95	1/888	1/7086
INDEL	Breast	SF3B5_G45_H46insSLTQT	HLA-B39:06	THFDLLNYFAI	0.9991	0.6951	1.3034	138.9	0.0573	241.95	1/888	1/7086
INDEL	Breast	PNPLA8_K199Nfs*44	HLA-B39:06	THSTFYQII	0.998	0.5304	0.0412	153.2	0.0649	31.38	1/888	1/7086
INDEL	Breast	PNPLA8_K199Nfs*44	HLA-B39:06	THSTFYQIIL	0.9718	0.5172	0.3769	158.9	0.0688	31.38	1/888	1/7086
INDEL	Breast	PNPLA8_K199Rfs*14	HLA-C05:01	YTSSITTRI	0.9977	0.8319	0.2446	270.4	0.12	31.38	2/888	2/7086
INDEL	Breast	PNPLA8_K199Rfs*14	HLA-C05:01	YTSSITTRI	0.9977	0.8319	0.2446	270.4	0.12	31.38	2/888	2/7086
INDEL	Breast	KMT2C_S1581Vfs*86	HLA-A02:01	IQPLIQWQV	0.861	0.7486	0.3367	187.7	1.581	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Vfs*86	HLA-A02:01	IQPLIQWQV	0.861	0.7486	0.3367	187.7	1.581	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Vfs*86	HLA-A02:01	RLWVKWQLL	0.9805	0.6596	0.4825	82	0.9246	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Vfs*86	HLA-A02:01	RLWVKWQLL	0.9805	0.6596	0.4825	82	0.9246	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Vfs*86	HLA-A02:01	LLPQFSTPI	0.974	0.5923	0.2896	65.3	0.785	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Vfs*86	HLA-A02:01	LLPQFSTPI	0.974	0.5923	0.2896	65.3	0.785	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Vfs*86	HLA-A02:01	KIQPLIQWQV	0.9228	0.7938	0.6891	116.4	1.1664	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Vfs*86	HLA-A02:01	KIQPLIQWQV	0.9228	0.7938	0.6891	116.4	1.1664	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Vfs*86	HLA-A02:01	ILMPGIKIQPL	0.9948	0.721	0.7438	43.4	0.5588	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Vfs*86	HLA-A02:01	ILMPGIKIQPL	0.9948	0.721	0.7438	43.4	0.5588	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Hfs*95	HLA-A02:01	LLPQADWEL	0.9437	0.8123	0.2464	40.7	0.5278	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Hfs*95	HLA-A02:01	LLPQADWEL	0.9437	0.8123	0.2464	40.7	0.5278	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Hfs*95	HLA-A02:01	IQPLIQWQV	0.861	0.7486	0.3367	187.7	1.581	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Hfs*95	HLA-A02:01	IQPLIQWQV	0.861	0.7486	0.3367	187.7	1.581	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Hfs*95	HLA-A02:01	RLWVKWQLL	0.9805	0.6596	0.4825	82	0.9246	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Hfs*95	HLA-A02:01	RLWVKWQLL	0.9805	0.6596	0.4825	82	0.9246	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Hfs*95	HLA-A02:01	LLPQFSTPI	0.974	0.5923	0.2896	65.3	0.785	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Hfs*95	HLA-A02:01	LLPQFSTPI	0.974	0.5923	0.2896	65.3	0.785	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Hfs*95	HLA-A02:01	TLCHFLLPQA	0.9427	0.8522	0.9762	96.7	1.0364	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Hfs*95	HLA-A02:01	TLCHFLLPQA	0.9427	0.8522	0.9762	96.7	1.0364	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Hfs*95	HLA-A02:01	FLLPQADWEL	0.9929	0.8414	0.1821	5	0.033	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Hfs*95	HLA-A02:01	FLLPQADWEL	0.9929	0.8414	0.1821	5	0.033	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Hfs*95	HLA-A02:01	KIQPLIQWQV	0.9228	0.7938	0.6891	116.4	1.1664	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Hfs*95	HLA-A02:01	KIQPLIQWQV	0.9228	0.7938	0.6891	116.4	1.1664	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Hfs*95	HLA-A02:01	LLPQADWELSL	0.92	0.7211	1.9897	129.6	1.2508	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Hfs*95	HLA-A02:01	LLPQADWELSL	0.92	0.7211	1.9897	129.6	1.2508	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Hfs*95	HLA-A02:01	ILMPGIKIQPL	0.9948	0.721	0.7438	43.4	0.5588	53.14	2/888	2/7086
INDEL	Breast	KMT2C_S1581Hfs*95	HLA-A02:01	ILMPGIKIQPL	0.9948	0.721	0.7438	43.4	0.5588	53.14	2/888	2/7086
INDEL	Breast	DDHD2_L296Hfs*47	HLA-A02:01	RLLWTQLLL	0.9765	0.6732	0.2102	28	0.3793	17.63	2/888	2/7086
INDEL	Breast	DDHD2_L296Hfs*47	HLA-A02:01	RLLWTQLLL	0.9765	0.6732	0.2102	28	0.3793	17.63	2/888	2/7086
INDEL	Breast	STAU2_M423delinsTKCLKAEFLFV	HLA-A02:01	CLKAEFLFV	0.9604	0.6793	0.5924	111.2	1.1315	18.07	2/888	5/7086
INDEL	Breast	STAU2_M423delinsTKCLKAEFLFV	HLA-A02:01	CLKAEFLFV	0.9604	0.6793	0.5924	111.2	1.1315	18.07	2/888	5/7086
INDEL	Breast	PHF20L1_I696Rfs*11	HLA-B39:06	NRTSYNAPV	0.9963	0.7484	1.0955	190.6	0.0865	10.22	1/888	1/7086
INDEL	Breast	FREM1_I631Hfs*14	HLA-B39:06	HHVCQHFSI	0.999	0.7084	0.23	12.6	0.0069	1.47	1/888	1/7086
INDEL	Breast	FREM1_I631Hfs*14	HLA-B39:06	HHVCQHFSISI	0.9997	0.5924	0.8655	219.8	0.1009	1.47	1/888	1/7086
INDEL	Breast	DENND4C_I487Yfs*13	HLA-A02:01	SLNPQLYHC	0.8586	0.6302	1.0116	244.3	1.8708	29.29	2/888	2/7086
INDEL	Breast	DENND4C_I487Yfs*13	HLA-A02:01	SLNPQLYHC	0.8586	0.6302	1.0116	244.3	1.8708	29.29	2/888	2/7086
INDEL	Breast	EGFL7_R184Qfs*100	HLA-A02:01	RLPERADFL	0.9542	0.6888	0.0356	183.2	1.5579	14.76	2/888	2/7086
INDEL	Breast	EGFL7_R184Qfs*100	HLA-A02:01	RLPERADFL	0.9542	0.6888	0.0356	183.2	1.5579	14.76	2/888	2/7086
INDEL	Breast	EGFL7_R184Qfs*100	HLA-A02:01	FLPGGAAGV	0.99	0.8109	0.0686	8.9	0.102	14.76	2/888	2/7086
INDEL	Breast	EGFL7_R184Qfs*100	HLA-A02:01	FLPGGAAGV	0.99	0.8109	0.0686	8.9	0.102	14.76	2/888	2/7086
INDEL	Breast	EGFL7_R184Qfs*100	HLA-A02:01	FLPGGAAGVLL	0.9833	0.646	0.4246	241	1.8533	14.76	2/888	2/7086
INDEL	Breast	EGFL7_R184Qfs*100	HLA-A02:01	FLPGGAAGVLL	0.9833	0.646	0.4246	241	1.8533	14.76	2/888	2/7086
INDEL	Breast	TMEM26_I165Qfs*33	HLA-A02:01	FLCLWGQRL	0.9632	0.6587	0.3302	173	1.5039	1.02	2/888	2/7086
INDEL	Breast	TMEM26_I165Qfs*33	HLA-A02:01	FLCLWGQRL	0.9632	0.6587	0.3302	173	1.5039	1.02	2/888	2/7086
INDEL	Breast	TMEM26_I165Qfs*33	HLA-A02:01	RLTYWNSQV	0.9741	0.6439	0.1734	90.8	0.9951	1.02	2/888	2/7086
INDEL	Breast	TMEM26_I165Qfs*33	HLA-A02:01	RLTYWNSQV	0.9741	0.6439	0.1734	90.8	0.9951	1.02	2/888	2/7086
INDEL	Breast	MPEG1_D352Pfs*36	HLA-B39:06	CHLAAQISI	0.9988	0.7556	0.3009	99.6	0.0368	169.28	1/888	1/7086
INDEL	Breast	MPEG1_D352Pfs*36	HLA-B39:06	CHLAAQISIL	0.9979	0.6496	1.5252	235	0.1074	169.28	1/888	1/7086
INDEL	Breast	MPEG1_D352Pfs*36	HLA-A02:01	AQISILPTSI	0.94	0.5756	0.9762	147	1.3621	169.28	2/888	2/7086
INDEL	Breast	MPEG1_D352Pfs*36	HLA-A02:01	AQISILPTSI	0.94	0.5756	0.9762	147	1.3621	169.28	2/888	2/7086
INDEL	Breast	ZC3H12C_K205_S206insAFKDYLV	HLA-A02:01	YLVSEADQTV	0.9952	0.5784	0.3717	32.3	0.4306	4.14	2/888	2/7086
INDEL	Breast	ZC3H12C_K205_S206insAFKDYLV	HLA-A02:01	YLVSEADQTV	0.9952	0.5784	0.3717	32.3	0.4306	4.14	2/888	2/7086
INDEL	Breast	MBD6_P187Qfs*81	HLA-A02:01	GLFPQGLLT	0.9448	0.7688	0.9275	240.3	1.8498	37.3	2/888	2/7086
INDEL	Breast	MBD6_P187Qfs*81	HLA-A02:01	GLFPQGLLT	0.9448	0.7688	0.9275	240.3	1.8498	37.3	2/888	2/7086
INDEL	Breast	MBD6_P187Qfs*81	HLA-A02:01	LLTQSLLGA	0.9462	0.5638	0.538	202.8	1.6612	37.3	2/888	2/7086
INDEL	Breast	MBD6_P187Qfs*81	HLA-A02:01	LLTQSLLGA	0.9462	0.5638	0.538	202.8	1.6612	37.3	2/888	2/7086
INDEL	Breast	MBD6_P187Qfs*81	HLA-A02:01	LLGAVAAPV	0.9928	0.7823	0.2557	13.2	0.1599	37.3	2/888	2/7086
INDEL	Breast	MBD6_P187Qfs*81	HLA-A02:01	LLGAVAAPV	0.9928	0.7823	0.2557	13.2	0.1599	37.3	2/888	2/7086
INDEL	Breast	MBD6_P187Qfs*81	HLA-A02:01	AMPPLQPHL	0.9898	0.7944	0.1498	214	1.7184	37.3	2/888	2/7086
INDEL	Breast	MBD6_P187Qfs*81	HLA-A02:01	AMPPLQPHL	0.9898	0.7944	0.1498	214	1.7184	37.3	2/888	2/7086
INDEL	Breast	MBD6_P187Qfs*81	HLA-B39:06	LHLLSASML	0.9969	0.8721	1.014	132.4	0.0547	37.3	1/888	1/7086
INDEL	Breast	MBD6_P187Qfs*81	HLA-B44:02	GELPSDPAW	0.9965	0.8546	0.0177	122.7	0.1518	37.3	1/888	1/7086
INDEL	Breast	MBD6_P187Qfs*81	HLA-B39:06	HHLQTLLSS	0.9944	0.7284	0.5723	490.6	0.219	37.3	1/888	1/7086
INDEL	Breast	MBD6_P187Qfs*81	HLA-A02:01	LLTQSLLGAV	0.9749	0.595	0.9663	72.9	0.8515	37.3	2/888	2/7086
INDEL	Breast	MBD6_P187Qfs*81	HLA-A02:01	LLTQSLLGAV	0.9749	0.595	0.9663	72.9	0.8515	37.3	2/888	2/7086
INDEL	Breast	MBD6_P187Qfs*81	HLA-A02:01	SLLGAVAAPV	0.9962	0.8564	0.3152	12.2	0.1462	37.3	2/888	2/7086
INDEL	Breast	MBD6_P187Qfs*81	HLA-A02:01	SLLGAVAAPV	0.9962	0.8564	0.3152	12.2	0.1462	37.3	2/888	2/7086
INDEL	Breast	MBD6_P187Qfs*81	HLA-A02:01	SMLPHTTGEL	0.7456	0.6981	0.7247	173.5	1.5069	37.3	2/888	2/7086
INDEL	Breast	MBD6_P187Qfs*81	HLA-A02:01	SMLPHTTGEL	0.7456	0.6981	0.7247	173.5	1.5069	37.3	2/888	2/7086
INDEL	Breast	MBD6_P187Qfs*81	HLA-B39:06	HHLQTLLSSTV	0.9997	0.7923	0.9297	362.9	0.1637	37.3	1/888	1/7086
INDEL	Breast	CAND1_L1052Qfs*15	HLA-A02:01	LLDTVLPHQL	0.9868	0.6253	0.367	75.7	0.8743	46.55	2/888	2/7086
INDEL	Breast	CAND1_L1052Qfs*15	HLA-A02:01	LLDTVLPHQL	0.9868	0.6253	0.367	75.7	0.8743	46.55	2/888	2/7086
INDEL	Breast	FLT1_P661Rfs*26	HLA-B39:06	YHTSCETSV	0.9985	0.8242	0.2913	86.3	0.0311	13.03	1/888	1/7086
INDEL	Breast	FLT1_P661Rfs*26	HLA-B39:06	YHTSCETSVI	0.9952	0.7214	1.6023	140.5	0.0579	13.03	1/888	1/7086
INDEL	Breast	ZNF280D_S573Rfs*49	HLA-A02:01	LIQVSLMEV	0.9761	0.6037	0.5815	101	1.0647	6.38	2/888	2/7086
INDEL	Breast	ZNF280D_S573Rfs*49	HLA-A02:01	LIQVSLMEV	0.9761	0.6037	0.5815	101	1.0647	6.38	2/888	2/7086
INDEL	Breast	ZNF280D_S573Rfs*49	HLA-A02:01	SLMEVNLNT	0.9771	0.5073	0.4456	37.8	0.4937	6.38	2/888	2/7086
INDEL	Breast	ZNF280D_S573Rfs*49	HLA-A02:01	SLMEVNLNT	0.9771	0.5073	0.4456	37.8	0.4937	6.38	2/888	2/7086
INDEL	Breast	ZNF280D_S573Rfs*49	HLA-B39:06	NKAHWLVAI	0.9958	0.887	0.4548	471.6	0.2102	6.38	1/888	1/7086
INDEL	Breast	ZNF280D_S573Rfs*49	HLA-A02:01	NLIQVSLMEV	0.9942	0.703	0.2653	25.7	0.3513	6.38	2/888	2/7086
INDEL	Breast	ZNF280D_S573Rfs*49	HLA-A02:01	NLIQVSLMEV	0.9942	0.703	0.2653	25.7	0.3513	6.38	2/888	2/7086
INDEL	Breast	NR1D1_P100Lfs*26	HLA-B39:06	YKWPWRTAA	0.9965	0.9527	0.0523	253.4	0.1147	10.97	1/888	1/7086
INDEL	Breast	ZNF652_P540Lfs*43	HLA-B39:06	THTLTTHTT	0.9767	0.6696	0.5365	276.4	0.1232	20.12	1/888	1/7086
INDEL	Breast	ZNF652_P540Lfs*43	HLA-B39:06	SHTCTSTHTL	0.9946	0.6964	1.1617	103.5	0.0383	20.12	1/888	1/7086
INDEL	Breast	ZNF652_P540Lfs*43	HLA-B39:06	THTTFPSLQSL	0.9979	0.8704	1.1763	453.9	0.2017	20.12	1/888	1/7086
INDEL	Breast	PPM1D_M515Vfs*9	HLA-C05:01	VMDQKNLKV	0.9999	0.9533	0.1401	123	0.0657	12.64	2/888	2/7086
INDEL	Breast	PPM1D_M515Vfs*9	HLA-C05:01	VMDQKNLKV	0.9999	0.9533	0.1401	123	0.0657	12.64	2/888	2/7086
INDEL	Breast	ANKRD12_V1817_D1818insF	HLA-A02:01	SLAAIVFDSL	0.9876	0.5682	0.184	29.7	0.3979	17.62	2/888	2/7086
INDEL	Breast	ANKRD12_V1817_D1818insF	HLA-A02:01	SLAAIVFDSL	0.9876	0.5682	0.184	29.7	0.3979	17.62	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-C05:01	YLDNLLSI	0.9999	0.8573	0.4113	239.5	0.1077	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-C05:01	YLDNLLSI	0.9999	0.8573	0.4113	239.5	0.1077	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	MLVRNLMNV	0.9861	0.7351	0.1498	7.1	0.0695	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	MLVRNLMNV	0.9861	0.7351	0.1498	7.1	0.0695	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	FMLRNPMNV	0.9959	0.7374	0.1098	3.9	0.0182	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	FMLRNPMNV	0.9959	0.7374	0.1098	3.9	0.0182	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	KLLGLAVNL	0.9916	0.7989	0.0948	14.5	0.1784	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	KLLGLAVNL	0.9916	0.7989	0.0948	14.5	0.1784	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	LLGLAVNLL	0.9225	0.5715	1.1249	260.5	1.9482	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	LLGLAVNLL	0.9225	0.5715	1.1249	260.5	1.9482	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	IMVRNPTNV	0.9142	0.7473	0.5982	254.1	1.9191	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	IMVRNPTNV	0.9142	0.7473	0.5982	254.1	1.9191	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-C05:01	LVDIRVFTL	0.9999	0.9027	0.0412	251.3	0.1126	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-C05:01	LVDIRVFTL	0.9999	0.9027	0.0412	251.3	0.1126	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	TLVRSPLNV	0.9458	0.6448	0.4456	214.2	1.7193	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	TLVRSPLNV	0.9458	0.6448	0.4456	214.2	1.7193	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	FVSFPTLWV	0.9678	0.7486	0.184	47.3	0.6004	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	FVSFPTLWV	0.9678	0.7486	0.184	47.3	0.6004	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-B39:06	LHVGINLPC	0.9893	0.9578	0.8317	165.5	0.0735	7.49	1/888	1/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	KVLRNLISV	0.9763	0.6603	0.1285	29.5	0.3962	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	KVLRNLISV	0.9763	0.6603	0.1285	29.5	0.3962	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	LLDIRVFIV	0.993	0.5267	0.0861	51.1	0.6413	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	LLDIRVFIV	0.993	0.5267	0.0861	51.1	0.6413	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	SLYIAEFIL	0.9681	0.6388	0.5962	71.9	0.8438	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	SLYIAEFIL	0.9681	0.6388	0.5962	71.9	0.8438	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	ILVRNLMNV	0.9775	0.5557	0.1149	12.1	0.1454	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	ILVRNLMNV	0.9775	0.5557	0.1149	12.1	0.1454	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	LMLVRNLMNV	0.9759	0.6649	1.3768	44.4	0.5693	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	LMLVRNLMNV	0.9759	0.6649	1.3768	44.4	0.5693	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	KLLGLAVNLL	0.9902	0.5918	0.3898	34.1	0.4528	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	KLLGLAVNLL	0.9902	0.5918	0.3898	34.1	0.4528	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	FIMVRNPTNV	0.9672	0.744	0.6408	67.7	0.8081	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	FIMVRNPTNV	0.9672	0.744	0.6408	67.7	0.8081	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	CMDDLVDIRV	0.963	0.7075	0.4646	213.2	1.7144	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	CMDDLVDIRV	0.963	0.7075	0.4646	213.2	1.7144	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	FILERSHMNV	0.9956	0.6046	0.5962	26.9	0.366	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	FILERSHMNV	0.9956	0.6046	0.5962	26.9	0.366	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	FVSFPTLWVI	0.9217	0.6136	1.0474	60.5	0.7373	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	FVSFPTLWVI	0.9217	0.6136	1.0474	60.5	0.7373	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	TLWVIKEFIL	0.9503	0.5144	1.8581	191.3	1.599	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	TLWVIKEFIL	0.9503	0.5144	1.8581	191.3	1.599	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	FILEKNPMNA	0.985	0.5731	0.4614	239	1.8424	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	FILEKNPMNA	0.985	0.5731	0.4614	239	1.8424	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-B39:06	LHVGINLPCI	0.986	0.9601	1.0955	168.2	0.0755	7.49	1/888	1/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	FIQGRNTMNV	0.9345	0.6963	1.4692	221.4	1.7543	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	FIQGRNTMNV	0.9345	0.6963	1.4692	221.4	1.7543	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	CMDDLLDIRV	0.9662	0.6723	0.6058	131.9	1.2645	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	CMDDLLDIRV	0.9662	0.6723	0.6058	131.9	1.2645	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	LLDIRVFIVV	0.9881	0.69	1.1952	192.4	1.605	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	LLDIRVFIVV	0.9881	0.69	1.1952	192.4	1.605	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	FILVTNPLNV	0.9894	0.5781	0.4646	35.2	0.4653	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	FILVTNPLNV	0.9894	0.5781	0.4646	35.2	0.4653	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	SLYIAEFILV	0.9969	0.6488	0.241	18.8	0.2531	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	SLYIAEFILV	0.9969	0.6488	0.241	18.8	0.2531	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	FILVRNLMNV	0.9842	0.6778	0.8931	13.3	0.1614	7.49	2/888	2/7086
INDEL	Breast	ZNF607_H153Rfs*375	HLA-A02:01	FILVRNLMNV	0.9842	0.6778	0.8931	13.3	0.1614	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-C05:01	YLDNLLSI	0.9999	0.8573	0.4113	239.5	0.1077	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-C05:01	YLDNLLSI	0.9999	0.8573	0.4113	239.5	0.1077	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	AILQTLESI	0.945	0.6532	0.4808	250.5	1.9023	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	AILQTLESI	0.945	0.6532	0.4808	250.5	1.9023	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	MLVRNLMNV	0.9861	0.7351	0.1498	7.1	0.0695	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	MLVRNLMNV	0.9861	0.7351	0.1498	7.1	0.0695	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	FMLRNPMNV	0.9959	0.7374	0.1098	3.9	0.0182	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	FMLRNPMNV	0.9959	0.7374	0.1098	3.9	0.0182	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	KLLGLAVNL	0.9916	0.7989	0.0948	14.5	0.1784	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	KLLGLAVNL	0.9916	0.7989	0.0948	14.5	0.1784	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	LLGLAVNLL	0.9225	0.5715	1.1249	260.5	1.9482	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	LLGLAVNLL	0.9225	0.5715	1.1249	260.5	1.9482	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	IMVRNPTNV	0.9142	0.7473	0.5982	254.1	1.9191	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	IMVRNPTNV	0.9142	0.7473	0.5982	254.1	1.9191	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-C05:01	LVDIRVFTL	0.9999	0.9027	0.0412	251.3	0.1126	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-C05:01	LVDIRVFTL	0.9999	0.9027	0.0412	251.3	0.1126	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	TLVRSPLNV	0.9458	0.6448	0.4456	214.2	1.7193	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	TLVRSPLNV	0.9458	0.6448	0.4456	214.2	1.7193	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	FVSFPTLWV	0.9678	0.7486	0.184	47.3	0.6004	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	FVSFPTLWV	0.9678	0.7486	0.184	47.3	0.6004	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-B39:06	LHVGINLPC	0.9893	0.9578	0.8317	165.5	0.0735	7.49	1/888	1/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	KVLRNLISV	0.9763	0.6603	0.1285	29.5	0.3962	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	KVLRNLISV	0.9763	0.6603	0.1285	29.5	0.3962	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	LLDIRVFIV	0.993	0.5267	0.0861	51.1	0.6413	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	LLDIRVFIV	0.993	0.5267	0.0861	51.1	0.6413	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	SLYIAEFIL	0.9681	0.6388	0.5962	71.9	0.8438	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	SLYIAEFIL	0.9681	0.6388	0.5962	71.9	0.8438	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	ILVRNLMNV	0.9775	0.5557	0.1149	12.1	0.1454	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	ILVRNLMNV	0.9775	0.5557	0.1149	12.1	0.1454	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	LMLVRNLMNV	0.9759	0.6649	1.3768	44.4	0.5693	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	LMLVRNLMNV	0.9759	0.6649	1.3768	44.4	0.5693	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	KLLGLAVNLL	0.9902	0.5918	0.3898	34.1	0.4528	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	KLLGLAVNLL	0.9902	0.5918	0.3898	34.1	0.4528	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	FIMVRNPTNV	0.9672	0.744	0.6408	67.7	0.8081	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	FIMVRNPTNV	0.9672	0.744	0.6408	67.7	0.8081	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	CMDDLVDIRV	0.963	0.7075	0.4646	213.2	1.7144	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	CMDDLVDIRV	0.963	0.7075	0.4646	213.2	1.7144	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	FILERSHMNV	0.9956	0.6046	0.5962	26.9	0.366	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	FILERSHMNV	0.9956	0.6046	0.5962	26.9	0.366	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	FVSFPTLWVI	0.9217	0.6136	1.0474	60.5	0.7373	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	FVSFPTLWVI	0.9217	0.6136	1.0474	60.5	0.7373	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	TLWVIKEFIL	0.9503	0.5144	1.8581	191.3	1.599	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	TLWVIKEFIL	0.9503	0.5144	1.8581	191.3	1.599	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	FILEKNPMNA	0.985	0.5731	0.4614	239	1.8424	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	FILEKNPMNA	0.985	0.5731	0.4614	239	1.8424	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-B39:06	LHVGINLPCI	0.986	0.9601	1.0955	168.2	0.0755	7.49	1/888	1/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	FIQGRNTMNV	0.9345	0.6963	1.4692	221.4	1.7543	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	FIQGRNTMNV	0.9345	0.6963	1.4692	221.4	1.7543	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	CMDDLLDIRV	0.9662	0.6723	0.6058	131.9	1.2645	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	CMDDLLDIRV	0.9662	0.6723	0.6058	131.9	1.2645	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	LLDIRVFIVV	0.9881	0.69	1.1952	192.4	1.605	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	LLDIRVFIVV	0.9881	0.69	1.1952	192.4	1.605	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	FILVTNPLNV	0.9894	0.5781	0.4646	35.2	0.4653	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	FILVTNPLNV	0.9894	0.5781	0.4646	35.2	0.4653	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	SLYIAEFILV	0.9969	0.6488	0.241	18.8	0.2531	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	SLYIAEFILV	0.9969	0.6488	0.241	18.8	0.2531	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	FILVRNLMNV	0.9842	0.6778	0.8931	13.3	0.1614	7.49	2/888	2/7086
INDEL	Breast	ZNF607_S152Rfs*376	HLA-A02:01	FILVRNLMNV	0.9842	0.6778	0.8931	13.3	0.1614	7.49	2/888	2/7086
INDEL	Breast	ZNF235_K317Nfs*154	HLA-B39:06	AHIFMLICL	0.9936	0.542	0.4347	358.7	0.1611	2.86	1/888	1/7086
INDEL	Breast	ZNF235_K317Nfs*154	HLA-B39:06	ERSPIDVTV	0.9989	0.8047	0.1855	438.6	0.1959	2.86	1/888	1/7086
INDEL	Breast	ZNF235_K317Nfs*154	HLA-B39:06	NHINVGIVV	0.9992	0.7217	0.0052	37.8	0.0099	2.86	1/888	1/7086
INDEL	Breast	ZNF235_K317Nfs*154	HLA-B39:06	NHTNVMSVV	0.9995	0.8157	0.0084	46	0.014	2.86	1/888	1/7086
INDEL	Breast	ZNF235_K317Nfs*154	HLA-B39:06	IHATSVVRAL	0.9924	0.805	0.4409	204.1	0.0925	2.86	1/888	1/7086
INDEL	Breast	ZNF235_K317Nfs*154	HLA-A02:01	FTLERNLINV	0.9953	0.5332	0.2856	25	0.3423	2.86	2/888	5/7086
INDEL	Breast	ZNF235_K317Nfs*154	HLA-A02:01	FTLERNLINV	0.9953	0.5332	0.2856	25	0.3423	2.86	2/888	5/7086
INDEL	Breast	ZNF235_K317Nfs*154	HLA-A02:01	FTLERNHINV	0.9857	0.633	1.9339	182.3	1.5536	2.86	2/888	5/7086
INDEL	Breast	ZNF235_K317Nfs*154	HLA-A02:01	FTLERNHINV	0.9857	0.633	1.9339	182.3	1.5536	2.86	2/888	5/7086
INDEL	Breast	ZNF235_K317Nfs*154	HLA-A02:01	NVMSVVSALV	0.9775	0.5227	0.8515	142.2	1.3298	2.86	2/888	5/7086
INDEL	Breast	ZNF235_K317Nfs*154	HLA-A02:01	NVMSVVSALV	0.9775	0.5227	0.8515	142.2	1.3298	2.86	2/888	5/7086
INDEL	Breast	NRIP1_D810Ffs*6	HLA-C05:01	KSEPVSPQF	0.9997	0.8976	0.1072	315.8	0.1356	58.59	2/888	2/7086
INDEL	Breast	NRIP1_D810Ffs*6	HLA-C05:01	KSEPVSPQF	0.9997	0.8976	0.1072	315.8	0.1356	58.59	2/888	2/7086
INDEL	Breast	DMD_L2988Pfs*10	HLA-C05:01	IAPPLPLFL	0.9751	0.9098	0.0539	340.9	0.1434	6.62	2/888	2/7086
INDEL	Breast	DMD_L2988Pfs*10	HLA-C05:01	IAPPLPLFL	0.9751	0.9098	0.0539	340.9	0.1434	6.62	2/888	2/7086
INDEL	Breast	DMD_L2988Pfs*10	HLA-A02:01	ALRGEIAPPL	0.7961	0.8126	1.7372	150	1.3811	6.62	2/888	2/7086
INDEL	Breast	DMD_L2988Pfs*10	HLA-A02:01	ALRGEIAPPL	0.7961	0.8126	1.7372	150	1.3811	6.62	2/888	2/7086
INDEL	Breast	ARAF_Q183Rfs*109	HLA-A02:01	SLARVSALM	0.8345	0.5307	0.6314	157.5	1.4244	56.14	2/888	4/7086
INDEL	Breast	ARAF_Q183Rfs*109	HLA-A02:01	SLARVSALM	0.8345	0.5307	0.6314	157.5	1.4244	56.14	2/888	4/7086
INDEL	Breast	ARAF_Q183Rfs*109	HLA-A02:01	LMLPVVEEV	0.9987	0.6094	0.0025	6.5	0.0573	56.14	2/888	4/7086
INDEL	Breast	ARAF_Q183Rfs*109	HLA-A02:01	LMLPVVEEV	0.9987	0.6094	0.0025	6.5	0.0573	56.14	2/888	4/7086
INDEL	Breast	ARAF_Q183Rfs*109	HLA-A02:01	MLPVVEEVV	0.9798	0.6423	0.713	154.1	1.4064	56.14	2/888	4/7086
INDEL	Breast	ARAF_Q183Rfs*109	HLA-A02:01	MLPVVEEVV	0.9798	0.6423	0.713	154.1	1.4064	56.14	2/888	4/7086
INDEL	Breast	ARAF_Q183Rfs*109	HLA-A02:01	ALMLPVVEEV	0.9976	0.6343	0.1566	13.5	0.1649	56.14	2/888	4/7086
INDEL	Breast	ARAF_Q183Rfs*109	HLA-A02:01	ALMLPVVEEV	0.9976	0.6343	0.1566	13.5	0.1649	56.14	2/888	4/7086
INDEL	Breast	ARAF_Q183Rfs*109	HLA-A02:01	LMLPVVEEVV	0.9887	0.5237	0.5601	36	0.4739	56.14	2/888	4/7086
INDEL	Breast	ARAF_Q183Rfs*109	HLA-A02:01	LMLPVVEEVV	0.9887	0.5237	0.5601	36	0.4739	56.14	2/888	4/7086
INDEL	Breast	HUWE1_E748Gfs*33	HLA-A02:01	LLVQRNVFL	0.9511	0.5568	0.3624	100.8	1.0634	137.78	2/888	2/7086
INDEL	Breast	HUWE1_E748Gfs*33	HLA-A02:01	LLVQRNVFL	0.9511	0.5568	0.3624	100.8	1.0634	137.78	2/888	2/7086
INDEL	Breast	HUWE1_E748Gfs*33	HLA-A02:01	FLFPSWITS	0.9873	0.611	0.2636	38.6	0.5029	137.78	2/888	2/7086
INDEL	Breast	HUWE1_E748Gfs*33	HLA-A02:01	FLFPSWITS	0.9873	0.611	0.2636	38.6	0.5029	137.78	2/888	2/7086
INDEL	Breast	HUWE1_E748Gfs*33	HLA-A02:01	FLFPSWITSL	0.9957	0.6873	0.0021	6.5	0.0582	137.78	2/888	2/7086
INDEL	Breast	HUWE1_E748Gfs*33	HLA-A02:01	FLFPSWITSL	0.9957	0.6873	0.0021	6.5	0.0582	137.78	2/888	2/7086
INDEL	Breast	HUWE1_E748Gfs*33	HLA-A02:01	FLFPSWITSLM	0.9918	0.6344	1.403	34	0.4519	137.78	2/888	2/7086
INDEL	Breast	HUWE1_E748Gfs*33	HLA-A02:01	FLFPSWITSLM	0.9918	0.6344	1.403	34	0.4519	137.78	2/888	2/7086
INDEL	Breast	ATRX_V277delinsANII	HLA-A02:01	LLDLANIITA	0.9948	0.698	0.2868	131.3	1.2611	34.24	2/888	2/7086
INDEL	Breast	ATRX_V277delinsANII	HLA-A02:01	LLDLANIITA	0.9948	0.698	0.2868	131.3	1.2611	34.24	2/888	2/7086
INDEL	Breast	ATRX_L276delinsFT	HLA-A02:01	PLLDFTVTA	0.9133	0.6457	0.5982	152.5	1.3974	34.24	2/888	2/7086
INDEL	Breast	ATRX_L276delinsFT	HLA-A02:01	PLLDFTVTA	0.9133	0.6457	0.5982	152.5	1.3974	34.24	2/888	2/7086
INDEL	Breast	XKRX_M205Sfs*36	HLA-A02:01	SQWYFPWYL	0.9475	0.5584	0.0835	6.1	0.0505	1.13	2/888	2/7086
INDEL	Breast	XKRX_M205Sfs*36	HLA-A02:01	SQWYFPWYL	0.9475	0.5584	0.0835	6.1	0.0505	1.13	2/888	2/7086
INDEL	Breast	XKRX_M205Sfs*36	HLA-A02:01	YLSPMGPPF	0.8027	0.6002	0.9913	234.8	1.8201	1.13	2/888	2/7086
INDEL	Breast	XKRX_M205Sfs*36	HLA-A02:01	YLSPMGPPF	0.8027	0.6002	0.9913	234.8	1.8201	1.13	2/888	2/7086
INDEL	Breast	XKRX_M205Sfs*36	HLA-A02:01	YLSPMGPPFA	0.9724	0.5757	0.3851	44	0.5658	1.13	2/888	2/7086
INDEL	Breast	XKRX_M205Sfs*36	HLA-A02:01	YLSPMGPPFA	0.9724	0.5757	0.3851	44	0.5658	1.13	2/888	2/7086
INDEL	Breast	XKRX_M205Sfs*36	HLA-A02:01	YLSPMGPPFAI	0.9945	0.6181	0.5365	14	0.1716	1.13	2/888	2/7086
INDEL	Breast	XKRX_M205Sfs*36	HLA-A02:01	YLSPMGPPFAI	0.9945	0.6181	0.5365	14	0.1716	1.13	2/888	2/7086
INDEL	Breast	ESYT1_S18Gfs*88	HLA-A02:01	FIREAVAGA	0.8482	0.7049	0.7967	260.4	1.9477	47.93	1/888	1/7086
INDEL	Breast	NEK8_E463Afs*28	HLA-C06:02	FTNDIPNYL	0.874	0.9957	0.0919	97	0.0334	10.87	2/888	2/7086
INDEL	Breast	NEK8_E463Afs*28	HLA-C06:02	FTNDIPNYL	0.874	0.9957	0.0919	97	0.0334	10.87	2/888	2/7086
INDEL	Breast	NEK8_E463Afs*28	HLA-A02:01	YLPGAVETA	0.9905	0.7319	0.1112	26.3	0.3587	10.87	1/888	1/7086
INDEL	Breast	NEK8_E463Afs*28	HLA-B57:01	GAVETAADW	0.9875	0.9849	0.6715	146	0.3008	10.87	1/888	1/7086
INDEL	Breast	NEK8_E463Afs*28	HLA-A02:01	YLPGAVETAA	0.9214	0.6696	0.4196	260.2	1.9469	10.87	1/888	1/7086
INDEL	Breast	WARS_F280Pfs*45	HLA-A02:01	SLLQQLIPT	0.9522	0.8151	0.5094	44.3	0.5689	37.22	1/888	1/7086
INDEL	Breast	WARS_F280Pfs*45	HLA-A02:01	LLQQLIPTDL	0.6926	0.6392	1.8773	256.5	1.93	37.22	1/888	1/7086
INDEL	Breast	DYNC2H1_N4120Ifs*23	HLA-A11:01	LSHGRASGK	0.9821	0.666	0.7473	444.8	1.6438	1.59	1/888	1/7086
INDEL	Breast	EVC2_L173Rfs*105	HLA-B08:01	FQKCARCL	0.9965	0.6232	1.8773	203.8	0.3613	1.16	1/888	1/7086
INDEL	Breast	EVC2_L173Rfs*105	HLA-C07:01	HRQPAYGCL	0.9928	0.6713	0.5347	296.9	0.1076	1.16	1/888	1/7086
INDEL	Breast	EVC2_L173Rfs*105	HLA-C07:01	HRQPAYGCLL	0.9967	0.6293	0.5741	337.5	0.1213	1.16	1/888	1/7086
INDEL	Breast	C1orf168_F16delinsLS	HLA-C07:01	LRAKLSQNL	0.9908	0.7523	0.3925	218.9	0.0821	1.93	1/888	1/7086
INDEL	Breast	BCLAF1_Y88Pfs*94	HLA-A02:01	VLDEVVHV	0.9992	0.7853	0.0539	223.7	1.765	73.65	2/888	4/7086
INDEL	Breast	BCLAF1_Y88Pfs*94	HLA-A02:01	VLDEVVHV	0.9992	0.7853	0.0539	223.7	1.765	73.65	2/888	4/7086
INDEL	Breast	BCLAF1_Y88Pfs*94	HLA-A02:01	GTLGVLDEV	0.9536	0.7352	0.3837	68	0.81	73.65	2/888	4/7086
INDEL	Breast	BCLAF1_Y88Pfs*94	HLA-A02:01	GTLGVLDEV	0.9536	0.7352	0.3837	68	0.81	73.65	2/888	4/7086
INDEL	Breast	BCLAF1_Y88Pfs*94	HLA-A02:01	GVLDEVVHV	0.9975	0.6858	0.0121	25.2	0.3448	73.65	2/888	4/7086
INDEL	Breast	BCLAF1_Y88Pfs*94	HLA-A02:01	GVLDEVVHV	0.9975	0.6858	0.0121	25.2	0.3448	73.65	2/888	4/7086
INDEL	Breast	BCLAF1_Y88Pfs*94	HLA-A02:01	LLGLQDHPL	0.9108	0.6568	0.7286	246.7	1.8831	73.65	2/888	4/7086
INDEL	Breast	BCLAF1_Y88Pfs*94	HLA-A02:01	LLGLQDHPL	0.9108	0.6568	0.7286	246.7	1.8831	73.65	2/888	4/7086
INDEL	Breast	BCLAF1_Y88Pfs*94	HLA-A02:01	GLQDHPLLV	0.9988	0.6307	0.0142	20.8	0.2838	73.65	2/888	4/7086
INDEL	Breast	BCLAF1_Y88Pfs*94	HLA-A02:01	GLQDHPLLV	0.9988	0.6307	0.0142	20.8	0.2838	73.65	2/888	4/7086
INDEL	Breast	BCLAF1_Y88Pfs*94	HLA-A02:01	VLHPHIANL	0.9834	0.5257	0.0412	35.4	0.4674	73.65	2/888	4/7086
INDEL	Breast	BCLAF1_Y88Pfs*94	HLA-A02:01	VLHPHIANL	0.9834	0.5257	0.0412	35.4	0.4674	73.65	2/888	4/7086
INDEL	Breast	BCLAF1_Y88Pfs*94	HLA-C03:04	VLHPHIANL	0.987	0.9812	0.1039	254.1	0.655	73.65	1/888	1/7086
INDEL	Breast	BCLAF1_Y88Pfs*94	HLA-A02:01	FLLKDPEADL	0.9512	0.7733	0.4529	79.7	0.9056	73.65	2/888	4/7086
INDEL	Breast	BCLAF1_Y88Pfs*94	HLA-A02:01	FLLKDPEADL	0.9512	0.7733	0.4529	79.7	0.9056	73.65	2/888	4/7086
INDEL	Breast	BCLAF1_Y88Pfs*94	HLA-A02:01	GLQDHPLLVL	0.9851	0.5479	0.4001	220.4	1.7492	73.65	2/888	4/7086
INDEL	Breast	BCLAF1_Y88Pfs*94	HLA-A02:01	GLQDHPLLVL	0.9851	0.5479	0.4001	220.4	1.7492	73.65	2/888	4/7086
INDEL	Breast	BCLAF1_Y88Pfs*94	HLA-A02:01	TLGVLDEVVHV	0.9606	0.7298	1.1617	52.5	0.6555	73.65	2/888	4/7086
INDEL	Breast	BCLAF1_Y88Pfs*94	HLA-A02:01	TLGVLDEVVHV	0.9606	0.7298	1.1617	52.5	0.6555	73.65	2/888	4/7086
INDEL	Breast	BCLAF1_Y88Pfs*94	HLA-A02:01	VLDEVVHVPGV	0.9983	0.7071	0.4277	74.4	0.8639	73.65	2/888	4/7086
INDEL	Breast	BCLAF1_Y88Pfs*94	HLA-A02:01	VLDEVVHVPGV	0.9983	0.7071	0.4277	74.4	0.8639	73.65	2/888	4/7086
INDEL	Breast	GATA3_S410Qfs*97	HLA-C03:04	HAHADAPAI	0.984	0.9944	0.3413	28	0.1228	1280.53	1/888	1/7086
INDEL	Breast	GATA3_S410Qfs*97	HLA-A02:01	AIQPVLWTT	0.7836	0.8093	1.192	249.4	1.8972	1280.53	2/888	2/7086
INDEL	Breast	GATA3_S410Qfs*97	HLA-A02:01	AIQPVLWTT	0.7836	0.8093	1.192	249.4	1.8972	1280.53	2/888	2/7086
INDEL	Breast	SIN3A_H214Pfs*71	HLA-C07:01	HRMHPHVL	0.9998	0.7985	0.3386	437.3	0.1496	37.35	1/888	1/7086
INDEL	Breast	SIN3A_H214Pfs*71	HLA-A02:01	SLQPSQPQL	0.9638	0.845	0.3445	134.4	1.2798	37.35	2/888	2/7086
INDEL	Breast	SIN3A_H214Pfs*71	HLA-A02:01	SLQPSQPQL	0.9638	0.845	0.3445	134.4	1.2798	37.35	2/888	2/7086
INDEL	Breast	SIN3A_H214Pfs*71	HLA-C07:01	SRLPHFHRM	0.9997	0.7795	0.0686	72.3	0.0231	37.35	1/888	1/7086
INDEL	Breast	SIN3A_H214Pfs*71	HLA-C07:01	FHRMHPHVL	0.6117	0.7575	0.8399	144.7	0.0569	37.35	1/888	1/7086
INDEL	Breast	CPD_I703delinsNQKLL	HLA-B18:01	NQKLLALSY	0.8605	0.5483	0.4808	264.6	0.178	105.67	1/888	1/7086
INDEL	Breast	CPD_A704Cfs*15	HLA-C03:04	AVFQQICTF	0.9479	0.9757	0.7106	391.5	0.8481	105.67	1/888	1/7086
INDEL	Breast	CPD_A704Cfs*15	HLA-A02:01	FLFQGKFPDV	0.9969	0.8121	0.0255	3.9	0.0183	105.67	2/888	2/7086
INDEL	Breast	CPD_A704Cfs*15	HLA-A02:01	FLFQGKFPDV	0.9969	0.8121	0.0255	3.9	0.0183	105.67	2/888	2/7086
INDEL	Breast	PEAR1_F47Sfs*34	HLA-C16:01	ASGPGRAPI	0.614	0.9819	0.557	496.1	1.3675	7.24	1/888	1/7086
INDEL	Breast	PEAR1_F47Sfs*34	HLA-C16:01	ILAPSPRLY	0.5631	0.9788	0.0282	452.6	1.2865	7.24	1/888	1/7086
INDEL	Breast	PEAR1_F47Sfs*34	HLA-A02:01	RLYTGPCTV	0.9928	0.6804	0.0021	16.7	0.2127	7.24	1/888	1/7086
INDEL	Breast	PEAR1_F47Sfs*34	HLA-B58:01	YTGPCTVRW	0.9986	0.9243	0.0025	7.1	0.0297	7.24	1/888	1/7086
INDEL	Breast	PEAR1_F47Sfs*34	HLA-B58:01	LYTGPCTVRW	0.945	0.9169	1.5385	26.3	0.1759	7.24	1/888	1/7086
INDEL	Breast	PEAR1_F47Sfs*34	HLA-B58:01	RLYTGPCTVRW	0.9985	0.9424	0.0255	57.4	0.3166	7.24	1/888	1/7086
INDEL	Breast	PCNXL2_I1462Hfs*63	HLA-A02:01	LLLLQTRPL	0.8066	0.6634	1.3108	257.1	1.9329	3.27	1/888	1/7086
INDEL	Breast	PCNXL2_I1462Hfs*63	HLA-C03:04	RPLASPAVL	0.9549	0.9685	0.8607	191.4	0.5478	3.27	1/888	1/7086
INDEL	Breast	PCNXL2_I1462Hfs*63	HLA-C16:01	RPLASPAVL	0.6616	0.98	0.8655	226.3	0.7396	3.27	1/888	1/7086
INDEL	Breast	PCNXL2_I1462Hfs*63	HLA-A02:01	CLSPPLAHL	0.9883	0.8069	0.2882	69.8	0.826	3.27	1/888	1/7086
INDEL	Breast	MAP3K12_L202Cfs*23	HLA-C03:04	LAALSPPPY	0.8452	0.9861	1.4821	319.9	0.7508	2.82	1/888	1/7086
INDEL	Breast	MAP3K12_L202Cfs*23	HLA-B58:01	AALSPPPYW	0.9986	0.9908	0.1302	9.4	0.0502	2.82	1/888	1/7086
INDEL	Breast	MAP3K12_L202Cfs*23	HLA-A02:01	ALSPPPYWL	0.9851	0.7703	0.1086	32.6	0.4345	2.82	1/888	1/7086
INDEL	Breast	MAP3K12_L202Cfs*23	HLA-A02:01	WLTGPWASL	0.944	0.6978	0.704	140.2	1.3166	2.82	1/888	1/7086
INDEL	Breast	MAP3K12_L202Cfs*23	HLA-C03:04	WLTGPWASL	0.9528	0.993	1.8843	340.7	0.7782	2.82	1/888	1/7086
INDEL	Breast	MAP3K12_L202Cfs*23	HLA-B58:01	LAALSPPPYW	0.9993	0.9883	0.3806	7.5	0.0335	2.82	1/888	1/7086
INDEL	Breast	MAP3K12_L202Cfs*23	HLA-A02:01	WLTGPWASLV	0.966	0.6641	1.4566	131.3	1.2611	2.82	1/888	1/7086
INDEL	Breast	TBC1D4_T528Ifs*24	HLA-B35:01	QAVEGSNLTF	0.9922	0.8755	0.3199	241.8	0.5611	11.48	1/888	1/7086
INDEL	Breast	SPEN_E2846Dfs*44	HLA-B08:01	LILSQHRSL	0.9769	0.8947	0.8361	205.8	0.3646	19.49	1/888	1/7086
INDEL	Breast	SPEN_E2846Dfs*44	HLA-C07:01	HRSLHPKAL	0.9964	0.7882	0.1132	117.3	0.046	19.49	1/888	1/7086
INDEL	Breast	SPEN_E2846Dfs*44	HLA-B57:01	KALKLLQAM	0.998	0.9884	0.8087	377.9	0.605	19.49	1/888	1/7086
INDEL	Breast	SPEN_E2846Dfs*44	HLA-B57:01	KLLQAMRTW	0.9967	0.9975	0.1498	36.9	0.0993	19.49	1/888	1/7086
INDEL	Breast	SPEN_E2846Dfs*44	HLA-B57:01	RTWPPIPRW	0.9998	0.9968	0.0021	5.6	0.0079	19.49	1/888	1/7086
INDEL	Breast	SPEN_E2846Dfs*44	HLA-B57:01	RSLHPKALKL	0.9982	0.9688	0.5491	420	0.6567	19.49	1/888	1/7086
INDEL	Breast	SPEN_E2846Dfs*44	HLA-B57:01	MRTWPPIPRW	0.9935	0.9956	1.473	17	0.0309	19.49	1/888	1/7086
INDEL	Breast	SPEN_E2846Dfs*44	HLA-B57:01	RTWPPIPRWY	0.9994	0.9951	0.0658	48.7	0.1334	19.49	1/888	1/7086
INDEL	Breast	SPEN_E2846Dfs*44	HLA-B57:01	AMRTWPPIPRW	0.9998	0.9941	0.2319	92	0.2195	19.49	1/888	1/7086
INDEL	Breast	CDKN1B_V79Gfs*41	HLA-A03:01	RMSAGAARR	0.9819	0.5203	0.5279	104.8	0.3784	112.14	1/888	1/7086
INDEL	Breast	CDKN1B_V79Gfs*41	HLA-A03:01	RMSAGAARRR	0.9699	0.5109	0.793	329.3	0.9105	112.14	1/888	1/7086
INDEL	Breast	OXSM_M187Rfs*37	HLA-A30:01	NSRAQIMQY	0.8284	0.7684	1.3074	470.5	1.9507	14.87	1/888	1/7086
INDEL	Breast	OXSM_M187Rfs*37	HLA-C16:01	YPQPVPQEL	0.9281	0.9862	0.0671	208.9	0.6873	14.87	1/888	1/7086
INDEL	Breast	OXSM_M187Rfs*37	HLA-C16:01	MLWETHLDL	0.9258	0.982	0.7456	216.9	0.7106	14.87	1/888	1/7086
INDEL	Breast	TBX3_D160Rfs*5	HLA-A02:01	LLMDIIAADRL	0.9987	0.6814	0.3041	17.2	0.222	65.65	1/888	1/7086
INDEL	Breast	SOX9_D85Gfs*167	HLA-A68:01	HGADAHLPQR	0.9686	0.8966	0.4825	168.1	1.2365	78.95	1/888	1/7086
INDEL	Breast	CCDC28A_V60delinsENHGNSLISILDEVML	HLA-A02:01	SLISILDEV	0.9959	0.6865	0.0014	3.7	0.0159	39.17	1/888	1/7086
INDEL	Breast	CCDC28A_V60delinsENHGNSLISILDEVML	HLA-A02:01	SLISILDEVM	0.9698	0.6979	1.1679	56.6	0.696	39.17	1/888	1/7086
INDEL	Breast	CCDC28A_V60delinsENHGNSLISILDEVML	HLA-A02:01	ILDEVMLGSL	0.989	0.8418	0.7749	42.3	0.5468	39.17	1/888	1/7086
INDEL	Breast	CCDC28A_V60delinsENHGNSLISILDEVML	HLA-C05:01	ILDEVMLGSL	0.9999	0.9823	0.4183	399.9	0.1618	39.17	1/888	1/7086
INDEL	Breast	CCDC28A_V60delinsENHGNSLISILDEVML	HLA-A02:01	SLISILDEVML	0.9882	0.7615	0.4078	140.6	1.319	39.17	1/888	1/7086
INDEL	Breast	ABCC9_A665Rfs*57	HLA-A02:01	FMGQWFSYI	0.9958	0.5835	0.1086	4.3	0.0227	3.55	1/888	1/7086
INDEL	Breast	ABCC9_A665Rfs*57	HLA-A02:01	FMGQWFSYII	0.9931	0.512	0.6058	32.8	0.4377	3.55	1/888	1/7086
INDEL	Breast	ABCC9_A665Rfs*57	HLA-C07:01	YRYSNSNRSV	0.9746	0.5342	0.4916	142.5	0.0561	3.55	1/888	1/7086
INDEL	Breast	PLA2G6_L584Pfs*76	HLA-B08:01	MLQKLSGSL	0.988	0.9789	0.7986	98.2	0.1759	9.24	1/888	1/7086
INDEL	Breast	GATA3_R330Sfs*22	HLA-A02:01	CLQCLWALL	0.9472	0.8898	1.9543	270.8	1.9932	1554.6	1/888	1/7086
INDEL	Breast	GATA3_R330Sfs*22	HLA-B35:01	WALLQASQY	0.9946	0.7042	0.4061	27.2	0.1088	1554.6	1/888	1/7086
INDEL	Breast	GATA3_R330Sfs*22	HLA-A24:02	QWGPCLQCLW	0.9924	0.7078	1.12	365.8	0.5448	1554.6	1/888	1/7086
INDEL	Breast	TIAM2_E1606Gfs*56	HLA-A68:01	DVHPGVRVR	0.9825	0.7177	0.0062	248.8	1.5527	8.75	1/888	1/7086
INDEL	Breast	TIAM2_E1606Gfs*56	HLA-C03:04	WSGGTSAPL	0.9937	0.9834	1.276	43.1	0.1883	8.75	1/888	1/7086
INDEL	Breast	TIAM2_E1606Gfs*56	HLA-A32:01	RSVTSPLTV	0.9532	0.9658	0.1212	489.2	0.7465	8.75	1/888	1/7086
INDEL	Breast	TIAM2_E1606Gfs*56	HLA-C03:04	RSVTSPLTV	0.9527	0.9894	0.1498	195.1	0.5546	8.75	1/888	1/7086
INDEL	Breast	TIAM2_E1606Gfs*56	HLA-A32:01	VTSPLTVSL	0.9597	0.9072	0.2213	102.7	0.1774	8.75	1/888	1/7086
INDEL	Breast	TIAM2_E1606Gfs*56	HLA-C05:01	VTSPLTVSL	0.9997	0.9614	0.2367	493.2	0.19	8.75	1/888	1/7086
INDEL	Breast	TIAM2_E1606Gfs*56	HLA-C03:04	VTSPLTVSL	0.9998	0.9815	0.148	28.1	0.1233	8.75	1/888	1/7086
INDEL	Breast	MEPCE_K233Rfs*13	HLA-A32:01	ILIPRSVSI	0.9712	0.8844	0.3685	52.9	0.0949	48.66	1/888	1/7086
INDEL	Breast	MEPCE_K233Rfs*13	HLA-C03:04	ILIPRSVSI	0.9758	0.9797	0.2183	165	0.4955	48.66	1/888	1/7086
INDEL	Breast	MEPCE_K233Rfs*13	HLA-A32:01	RSVSILALM	0.9921	0.9686	0.5723	124.1	0.2147	48.66	1/888	1/7086
INDEL	Breast	MEPCE_K233Rfs*13	HLA-B15:01	RSVSILALM	0.939	0.9226	1.7896	144.3	0.7135	48.66	1/888	1/7086
INDEL	Breast	MEPCE_K233Rfs*13	HLA-C03:04	RSVSILALM	0.9904	0.9894	1.063	100	0.3631	48.66	1/888	1/7086
INDEL	Breast	MEPCE_K233Rfs*13	HLA-C03:04	SILALMRAM	0.9403	0.9652	1.9897	418.5	0.8843	48.66	1/888	1/7086
INDEL	Breast	KLHL11_R276Ifs*25	HLA-B15:01	AQVVPDETY	0.9983	0.8746	0.0686	65.5	0.3516	9.96	1/888	1/7086
INDEL	Breast	KLHL11_R276Ifs*25	HLA-B15:01	IAQVVPDETY	0.9946	0.6396	1.9055	187.4	0.8695	9.96	1/888	1/7086
INDEL	Breast	KLHL11_R276Ifs*25	HLA-B15:01	VVPDETYLPY	0.9972	0.8469	0.8698	323.6	1.3047	9.96	1/888	1/7086
INDEL	Breast	ITGB4_G688Qfs*63	HLA-C03:04	ATAAMLEVL	0.999	0.9882	0.5619	367.3	0.8135	67.98	1/888	1/7086
INDEL	Breast	ITGB4_G688Qfs*63	HLA-C03:04	AAMLEVLCL	0.9993	0.9951	0.1994	146.9	0.4629	67.98	1/888	1/7086
INDEL	Breast	ITGB4_G688Qfs*63	HLA-A32:01	AMLEVLCLL	0.8156	0.9794	0.5886	184.4	0.3276	67.98	1/888	1/7086
INDEL	Breast	ITGB4_G688Qfs*63	HLA-A68:01	GTSPVLQPR	0.9937	0.7986	0.0166	19	0.2369	67.98	1/888	1/7086
INDEL	Breast	FAIM3_E277Tfs*8	HLA-B15:01	VVKRAVTSM	0.9956	0.7614	0.3914	133.9	0.6717	72.26	1/888	1/7086
INDEL	Breast	CEP112_K438delinsTCDSMFLAHPAPLASE	HLA-C03:03	MFLAHPAPL	0.8719	0.9921	0.8833	223.1	0.6032	2.17	1/888	1/7086
INDEL	Breast	CEP112_K438delinsTCDSMFLAHPAPLASE	HLA-A02:01	FLAHPAPLA	0.996	0.576	0.1688	20.2	0.2754	2.17	1/888	1/7086
INDEL	Breast	CEP112_K438delinsTCDSMFLAHPAPLASE	HLA-A02:01	SMFLAHPAPL	0.9774	0.6708	0.7438	77.9	0.8908	2.17	1/888	1/7086
INDEL	Breast	LILRB5_L213_E214insSQPSPG	HLA-C03:03	LSQPSPGEI	0.97	0.9869	0.8468	463.8	0.9569	3.89	1/888	1/7086
INDEL	Breast	ID3_S49Pfs*27	HLA-B08:01	LARWKSYSA	0.9964	0.5959	1.0955	48.5	0.083	19.04	1/888	1/7086
INDEL	Breast	ZCCHC17_F19Cfs*38	HLA-A02:01	RLWGLYQNPRL	0.9729	0.8134	1.4254	142.1	1.3295	147.84	1/888	1/7086
INDEL	Breast	ZCCHC17_Q20Tfs*39	HLA-C07:01	FTYPRRGCY	0.5946	0.6622	0.7456	335.2	0.1206	147.84	2/888	2/7086
INDEL	Breast	ZCCHC17_Q20Tfs*39	HLA-C07:01	FTYPRRGCY	0.5946	0.6622	0.7456	335.2	0.1206	147.84	2/888	2/7086
INDEL	Breast	ZCCHC17_Q20Tfs*39	HLA-A02:01	RLWGLYQNPRL	0.9729	0.8134	1.4254	142.1	1.3295	147.84	1/888	1/7086
INDEL	Breast	SYDE2_L301Qfs*58	HLA-C07:01	IRNAKIEVI	0.9958	0.5526	0.1055	149.3	0.0585	6.42	2/888	2/7086
INDEL	Breast	SYDE2_L301Qfs*58	HLA-C07:01	IRNAKIEVI	0.9958	0.5526	0.1055	149.3	0.0585	6.42	2/888	2/7086
INDEL	Breast	SYDE2_L301Qfs*58	HLA-A02:01	KSTVHMWYV	0.8553	0.507	0.3199	154.1	1.406	6.42	2/888	2/7086
INDEL	Breast	SYDE2_L301Qfs*58	HLA-A02:01	HMWYVTLQT	0.8711	0.5909	1.2592	145.8	1.354	6.42	2/888	2/7086
INDEL	Breast	SYDE2_L301Qfs*58	HLA-A02:01	HMWYVTLQTL	0.9397	0.6462	1.1421	45.9	0.5852	6.42	2/888	2/7086
INDEL	Breast	DDR2_P750Hfs*20	HLA-A02:01	AVLHYPLDV	0.9401	0.7464	0.4263	175.1	1.5153	4.69	1/888	1/7086
INDEL	Breast	DDR2_P750Hfs*20	HLA-A02:01	YLAGQVHYS	0.9828	0.6077	0.5815	30.1	0.403	4.69	1/888	1/7086
INDEL	Breast	DDR2_P750Hfs*20	HLA-A02:01	VLGEYLAGQV	0.9947	0.8234	1.2465	24.1	0.33	4.69	1/888	1/7086
INDEL	Breast	FMO2_L366_A367insLIFL	HLA-A02:01	HLDKSTLLI	0.9492	0.5206	0.1596	218.6	1.7407	1.61	1/888	1/7086
INDEL	Breast	KMO_P201Qfs*25	HLA-A02:01	CIFGLEIPL	0.9408	0.6645	1.2692	106.8	1.1006	2.39	1/888	1/7086
INDEL	Breast	BIRC6_P4262_N4263insFYSIIL	HLA-C07:01	HHSPRVPFY	0.8818	0.614	0.1354	404.8	0.1411	10.6	2/888	2/7086
INDEL	Breast	BIRC6_P4262_N4263insFYSIIL	HLA-C07:01	HHSPRVPFY	0.8818	0.614	0.1354	404.8	0.1411	10.6	2/888	2/7086
INDEL	Breast	STARD7_M108Ifs*38	HLA-C07:01	FRALESSTTL	0.9985	0.7384	0.356	295.9	0.1073	265.22	2/888	2/7086
INDEL	Breast	STARD7_M108Ifs*38	HLA-C07:01	FRALESSTTL	0.9985	0.7384	0.356	295.9	0.1073	265.22	2/888	2/7086
INDEL	Breast	CUL3_I234Tfs*19	HLA-A02:01	FLAENSASVYT	0.9936	0.569	0.9059	65.2	0.7841	15.38	1/888	1/7086
INDEL	Breast	KIAA2018_N2137Hfs*9	HLA-B08:01	QMFSHTIL	0.9851	0.8195	1.202	395.7	0.6286	4.67	1/888	1/7086
INDEL	Breast	MECOM_E406Ffs*35	HLA-A02:01	LIWKVTLKV	0.9726	0.5352	0.1793	67.5	0.8057	1.83	1/888	1/7086
INDEL	Breast	MECOM_E406Ffs*35	HLA-A02:01	ALIWKVTLKV	0.9911	0.5385	0.4753	56.3	0.6932	1.83	1/888	1/7086
INDEL	Breast	CNOT6L_M321delinsITLK	HLA-B08:01	MLNRVITL	0.9998	0.9299	0.8444	28.7	0.0483	19.05	1/888	1/7086
INDEL	Breast	CNOT6L_M321delinsITLK	HLA-A02:01	AMLNRVITL	0.9868	0.7924	0.0187	16.5	0.2074	19.05	1/888	1/7086
INDEL	Breast	CNOT6L_M321delinsITLK	HLA-B08:01	AMLNRVITL	0.9961	0.9567	0.037	79.5	0.1395	19.05	1/888	1/7086
INDEL	Breast	CNOT6L_M321delinsITLK	HLA-B08:01	EAMLNRVITL	0.9939	0.8517	0.5815	104.8	0.1868	19.05	1/888	1/7086
INDEL	Breast	WDFY3_N1732_V1733insLN	HLA-A02:01	TVLGFNLNV	0.9695	0.8633	0.281	47.9	0.6072	7.37	1/888	1/7086
INDEL	Breast	WDFY3_N1732Kfs*121	HLA-C07:01	RRSGRLTEM	0.999	0.5079	0.3318	90.5	0.0339	7.37	2/888	3/7086
INDEL	Breast	WDFY3_N1732Kfs*121	HLA-C07:01	RRSGRLTEM	0.999	0.5079	0.3318	90.5	0.0339	7.37	2/888	3/7086
INDEL	Breast	WDFY3_N1732Kfs*121	HLA-A02:01	FQSFSHSFL	0.9638	0.5754	0.5094	142	1.3286	7.37	1/888	1/7086
INDEL	Breast	WDFY3_N1732Kfs*121	HLA-C07:01	LRTCRSVCL	0.9863	0.6358	0.891	303.7	0.1101	7.37	2/888	3/7086
INDEL	Breast	WDFY3_N1732Kfs*121	HLA-C07:01	LRTCRSVCL	0.9863	0.6358	0.891	303.7	0.1101	7.37	2/888	3/7086
INDEL	Breast	WDFY3_N1732Kfs*121	HLA-B08:01	AGVSRVASL	0.9985	0.5442	0.3235	439.8	0.6896	7.37	1/888	1/7086
INDEL	Breast	WDFY3_N1732Kfs*121	HLA-C07:01	SRVASLIWI	0.9954	0.6647	0.6535	446.1	0.1525	7.37	2/888	3/7086
INDEL	Breast	WDFY3_N1732Kfs*121	HLA-C07:01	SRVASLIWI	0.9954	0.6647	0.6535	446.1	0.1525	7.37	2/888	3/7086
INDEL	Breast	WDFY3_N1732Kfs*121	HLA-A02:01	SSLEFLPPA	0.9083	0.7796	0.4789	71.4	0.8394	7.37	1/888	1/7086
INDEL	Breast	WDFY3_N1732Kfs*121	HLA-A02:01	KLFFYYWEC	0.8568	0.5638	1.2529	37.3	0.4889	7.37	1/888	1/7086
INDEL	Breast	WDFY3_N1732Kfs*121	HLA-A02:01	FLPPAELWSL	0.9897	0.8191	0.1072	12	0.1436	7.37	1/888	1/7086
INDEL	Breast	WDFY3_N1732Kfs*121	HLA-A02:01	FLPPAELWSLL	0.9787	0.7838	1.584	23.4	0.3212	7.37	1/888	1/7086
INDEL	Breast	WDFY3_N1732Kfs*121	HLA-A02:01	SLLSITYAQKL	0.9394	0.582	1.7146	63.9	0.7721	7.37	1/888	1/7086
INDEL	Breast	INTU_F590Sfs*8	HLA-C07:01	GRYSKSKCF	0.9875	0.614	0.1734	423.6	0.1461	3.91	2/888	2/7086
INDEL	Breast	INTU_F590Sfs*8	HLA-C07:01	GRYSKSKCF	0.9875	0.614	0.1734	423.6	0.1461	3.91	2/888	2/7086
INDEL	Breast	DDX60_E1527_Y1528insAA	HLA-A02:01	ALDEAAYNM	0.9908	0.5811	0.0631	32.6	0.435	39.23	1/888	1/7086
INDEL	Breast	MAP1B_L502Efs*42	HLA-C07:01	MRFGKAQTSRL	0.9997	0.693	0.2025	368.6	0.1309	13.22	2/888	2/7086
INDEL	Breast	MAP1B_L502Efs*42	HLA-C07:01	MRFGKAQTSRL	0.9997	0.693	0.2025	368.6	0.1309	13.22	2/888	2/7086
INDEL	Breast	LNPEP_M126Ifs*24	HLA-A02:01	FTYCPDVPL	0.9236	0.5523	0.9079	65.3	0.7852	7.6	1/888	1/7086
INDEL	Breast	LNPEP_M126Ifs*24	HLA-B08:01	VPLPKKAAI	0.9922	0.7777	0.1514	366.7	0.5881	7.6	1/888	1/7086
INDEL	Breast	LNPEP_M126Ifs*24	HLA-B08:01	AAIKKTSQL	0.9981	0.7203	0.0848	453.6	0.7077	7.6	1/888	1/7086
INDEL	Breast	HIVEP1_L1689Gfs*28	HLA-C07:01	QRRNFYVKM	0.9977	0.6106	0.1448	459.7	0.1572	7.01	2/888	2/7086
INDEL	Breast	HIVEP1_L1689Gfs*28	HLA-C07:01	QRRNFYVKM	0.9977	0.6106	0.1448	459.7	0.1572	7.01	2/888	2/7086
INDEL	Breast	HIVEP1_L1689Gfs*28	HLA-C07:01	RRNFYVKMF	0.9978	0.6215	0.0084	116.1	0.0455	7.01	2/888	2/7086
INDEL	Breast	HIVEP1_L1689Gfs*28	HLA-C07:01	RRNFYVKMF	0.9978	0.6215	0.0084	116.1	0.0455	7.01	2/888	2/7086
INDEL	Breast	HIVEP1_L1689Gfs*28	HLA-C07:01	RRNFYVKMFF	0.9991	0.6073	0.1149	326.5	0.1178	7.01	2/888	2/7086
INDEL	Breast	HIVEP1_L1689Gfs*28	HLA-C07:01	RRNFYVKMFF	0.9991	0.6073	0.1149	326.5	0.1178	7.01	2/888	2/7086
INDEL	Breast	ZNF318_R902Lfs*15	HLA-A02:01	KLKNDLSYL	0.9607	0.5491	0.2464	87	0.9657	9.96	1/888	1/7086
INDEL	Breast	ZNF318_R902Lfs*15	HLA-A02:01	YLGSPPEEDV	0.9515	0.6196	1.4692	253.7	1.9172	9.96	1/888	1/7086
INDEL	Breast	FAM83B_C197_S198insYNF	HLA-A02:01	KQGCYNFSV	0.97	0.5559	0.3495	39.5	0.5132	20.49	1/888	1/7086
INDEL	Breast	REV3L_H2305Kfs*12	HLA-B08:01	ELKRVIML	0.9997	0.5943	0.5312	129.3	0.2315	4.11	1/888	1/7086
INDEL	Breast	REV3L_H2305Kfs*12	HLA-A02:01	TLISVELKRV	0.9906	0.6235	0.5038	138.5	1.3044	4.11	1/888	1/7086
INDEL	Breast	VPS41_I194Rfs*20	HLA-B08:01	NMGVKRRFL	0.9624	0.663	1.1679	46	0.0778	14.54	1/888	1/7086
INDEL	Breast	ZNF117_R40Sfs*9	HLA-C07:01	RRYSVDMRI	0.9921	0.516	0.0154	126.5	0.0501	18.88	2/888	2/7086
INDEL	Breast	ZNF117_R40Sfs*9	HLA-C07:01	RRYSVDMRI	0.9921	0.516	0.0154	126.5	0.0501	18.88	2/888	2/7086
INDEL	Breast	ZNF655_E130Vfs*42	HLA-B08:01	LMQIREFL	0.9988	0.7156	0.704	107.1	0.1905	12.93	1/888	1/7086
INDEL	Breast	ZNF655_E130Vfs*42	HLA-B08:01	IPMTMISM	0.9746	0.6147	0.8833	386.4	0.6148	12.93	1/888	1/7086
INDEL	Breast	ZNF655_E130Vfs*42	HLA-B08:01	VMNPKKASV	0.9951	0.7513	0.4001	149.5	0.2672	12.93	1/888	1/7086
INDEL	Breast	ZNF655_E130Vfs*42	HLA-A02:01	LLMQIREFL	0.9915	0.5138	0.0794	21.4	0.293	12.93	1/888	1/7086
INDEL	Breast	ZNF655_E130Vfs*42	HLA-B08:01	LLMQIREFL	0.9348	0.723	1.2725	314.5	0.5201	12.93	1/888	1/7086
INDEL	Breast	ZNF655_E130Vfs*42	HLA-C07:01	YRIPMTMISM	0.9996	0.7113	0.1285	71.8	0.0229	12.93	2/888	2/7086
INDEL	Breast	ZNF655_E130Vfs*42	HLA-C07:01	YRIPMTMISM	0.9996	0.7113	0.1285	71.8	0.0229	12.93	2/888	2/7086
INDEL	Breast	KMT2C_F2657Hfs*23	HLA-B08:01	FQKLLCQHL	0.8968	0.799	0.8444	468.8	0.7277	14.82	1/888	1/7086
INDEL	Breast	KMT2C_F2657Hfs*23	HLA-A02:01	LLCQHLYRL	0.9839	0.6182	0.1072	67.6	0.8069	14.82	1/888	1/7086
INDEL	Breast	KMT2C_F2657Hfs*23	HLA-C07:01	YRLKQRLII	0.9956	0.5693	0.0745	50.4	0.0151	14.82	2/888	2/7086
INDEL	Breast	KMT2C_F2657Hfs*23	HLA-C07:01	YRLKQRLII	0.9956	0.5693	0.0745	50.4	0.0151	14.82	2/888	2/7086
INDEL	Breast	KMT2C_F2657Hfs*23	HLA-A02:01	KLLCQHLYRL	0.989	0.6468	1.1532	30.7	0.4108	14.82	1/888	1/7086
INDEL	Breast	STAU2_H139Pfs*15	HLA-C07:01	QRYPIAQCL	0.9994	0.7167	0.0121	67.9	0.0215	26.65	2/888	2/7086
INDEL	Breast	STAU2_H139Pfs*15	HLA-C07:01	QRYPIAQCL	0.9994	0.7167	0.0121	67.9	0.0215	26.65	2/888	2/7086
INDEL	Breast	STAU2_H139Pfs*15	HLA-C07:01	LRSFMFSSL	0.9965	0.7248	0.4475	182.5	0.0696	26.65	2/888	2/7086
INDEL	Breast	STAU2_H139Pfs*15	HLA-C07:01	LRSFMFSSL	0.9965	0.7248	0.4475	182.5	0.0696	26.65	2/888	2/7086
INDEL	Breast	ZHX1_F778Lfs*14	HLA-B08:01	LIKLIKLEL	0.9938	0.6822	0.5195	231	0.4044	37.01	1/888	1/7086
INDEL	Breast	ZHX1_F778Lfs*14	HLA-A02:01	SLIKLIKLEL	0.9433	0.739	1.3843	83.9	0.9409	37.01	1/888	1/7086
INDEL	Breast	ZHX1_F778Lfs*14	HLA-A02:01	KLIKLELQYL	0.9888	0.7632	0.2335	46.6	0.5928	37.01	1/888	1/7086
INDEL	Breast	ANK3_F2722Lfs*59	HLA-B08:01	TQKVRTCL	0.9995	0.5701	0.0717	38.2	0.0629	10.5	1/888	1/7086
INDEL	Breast	ANK3_F2722Lfs*59	HLA-B08:01	YPSTKFLL	0.9993	0.6045	0.0861	56.2	0.1016	10.5	1/888	1/7086
INDEL	Breast	ANK3_F2722Lfs*59	HLA-A02:01	KLSSIRLKL	0.9887	0.5205	0.0299	192.4	1.6049	10.5	2/888	2/7086
INDEL	Breast	ANK3_F2722Lfs*59	HLA-B08:01	MNKAHTQKV	0.9943	0.8118	1.6663	431.3	0.6782	10.5	1/888	1/7086
INDEL	Breast	JMJD1C_W1554Cfs*17	HLA-A02:01	KLKKACILV	0.9478	0.5358	0.9889	267.5	1.9791	31.36	1/888	1/7086
INDEL	Breast	CTR9_Y262Tfs*6	HLA-A02:01	QLLSRATFV	0.9836	0.5313	0.1821	58.9	0.7205	34.24	1/888	1/7086
INDEL	Breast	FAR1_M450Kfs*27	HLA-A02:01	SLYHFVWPP	0.8431	0.5453	0.1793	63	0.7625	57.88	1/888	1/7086
INDEL	Breast	QSER1_V1204Afs*51	HLA-B08:01	FLLMKMIL	0.9995	0.8308	0.4295	50.6	0.0877	34.69	1/888	1/7086
INDEL	Breast	QSER1_V1204Afs*51	HLA-B08:01	MLIKASLL	0.9978	0.754	1.9269	109.2	0.1938	34.69	1/888	1/7086
INDEL	Breast	QSER1_V1204Afs*51	HLA-B08:01	TPLALFFCL	0.6364	0.6833	1.2862	356.1	0.5752	34.69	1/888	1/7086
INDEL	Breast	QSER1_V1204Afs*51	HLA-A02:01	IMNLKTWNI	0.9763	0.5006	0.0762	32.1	0.4292	34.69	1/888	1/7086
INDEL	Breast	QSER1_V1204Afs*51	HLA-B08:01	IMNLKTWNI	0.8991	0.8821	0.2712	294.9	0.493	34.69	1/888	1/7086
INDEL	Breast	QSER1_V1204Afs*51	HLA-A02:01	KMILDIVKM	0.9582	0.5753	0.3822	199.1	1.6415	34.69	1/888	1/7086
INDEL	Breast	QSER1_V1204Afs*51	HLA-A02:01	MILDIVKML	0.991	0.5682	0.2604	164.5	1.4614	34.69	1/888	1/7086
INDEL	Breast	QSER1_V1204Afs*51	HLA-A02:01	KMILDIVKML	0.959	0.6037	1.566	150.5	1.3844	34.69	1/888	1/7086
INDEL	Breast	QSER1_V1204Afs*51	HLA-A02:01	MILDIVKMLI	0.9882	0.577	0.5868	46	0.5862	34.69	1/888	1/7086
INDEL	Breast	KIF21A_R15_I16insCLTARE	HLA-B08:01	SVRVAVRCL	0.801	0.6715	0.6837	498.9	0.7654	15.63	1/888	1/7086
INDEL	Breast	EDNRB_W336_L337insFFIPP	HLA-A02:01	FIPPLPLHL	0.9929	0.6684	0.0452	126.4	1.231	1.82	1/888	1/7086
INDEL	Breast	EDNRB_W336_L337insFFIPP	HLA-A02:01	ALCWFFIPPL	0.9677	0.7066	0.4153	22.6	0.3105	1.82	1/888	1/7086
INDEL	Breast	ARGLU1_E222_Q223insSK	HLA-A02:01	KLAEESKQL	0.993	0.733	0.2227	127.4	1.2368	33.67	1/888	1/7086
INDEL	Breast	C14orf37_S417Rfs*25	HLA-A02:01	NLLQRLHGI	0.9019	0.5699	0.0734	108.5	1.113	4.64	1/888	1/7086
INDEL	Breast	C14orf37_S417Rfs*25	HLA-B08:01	NLLQRLHGI	0.9956	0.8816	0.1285	109.8	0.1946	4.64	1/888	1/7086
INDEL	Breast	C14orf37_S417Rfs*25	HLA-A02:01	FLRNHCFCL	0.9086	0.5433	0.5077	61.6	0.7485	4.64	1/888	1/7086
INDEL	Breast	C14orf37_S417Rfs*25	HLA-B08:01	FLRNHCFCL	0.991	0.7551	0.511	8.4	0.0087	4.64	1/888	1/7086
INDEL	Breast	CEP152_N90Kfs*81	HLA-B08:01	YMLEKNVV	0.9968	0.7583	0.4902	425	0.6698	4.16	1/888	1/7086
INDEL	Breast	CEP152_N90Kfs*81	HLA-A02:01	YMLEKNVVM	0.9912	0.5531	0.0697	7.3	0.0725	4.16	1/888	1/7086
INDEL	Breast	CEP152_N90Kfs*81	HLA-B08:01	YMLEKNVVM	0.9862	0.7701	0.1383	153.5	0.2737	4.16	1/888	1/7086
INDEL	Breast	CEP152_N90Kfs*81	HLA-A02:01	KTLGHIPMV	0.9957	0.6708	0.0014	14.1	0.1723	4.16	1/888	1/7086
INDEL	Breast	CEP152_N90Kfs*81	HLA-B08:01	IPMVRSRNL	0.9952	0.7467	0.361	31.6	0.0526	4.16	1/888	1/7086
INDEL	Breast	SLTM_I442delinsKNKSLL	HLA-A02:01	SLLAHLHRT	0.8389	0.6948	0.4232	96.2	1.0327	27.05	1/888	1/7086
INDEL	Breast	SLTM_I442delinsKNKSLL	HLA-B08:01	LAHLHRTEL	0.9989	0.7914	0.2942	43.9	0.0738	27.05	1/888	1/7086
INDEL	Breast	POLI_I293_L294insSYY	HLA-A02:01	YLEKELGISV	0.9866	0.7819	0.6117	51.6	0.6462	16.02	1/888	1/7086
INDEL	Breast	ZNF493_L66Yfs*94	HLA-A02:01	LLDTGEFIL	0.9858	0.6715	0.1793	30	0.4017	2.58	1/888	1/7086
INDEL	Breast	ZNF493_L66Yfs*94	HLA-B08:01	NLLTRTQTL	0.998	0.9422	0.0932	15.6	0.0176	2.58	1/888	1/7086
INDEL	Breast	ZNF493_L66Yfs*94	HLA-A02:01	ILDRNPTNV	0.9886	0.5991	0.1448	65.4	0.7869	2.58	1/888	1/7086
INDEL	Breast	ZNF493_L66Yfs*94	HLA-A02:01	FILDRNPTNV	0.9957	0.6785	0.1255	34.6	0.4581	2.58	1/888	1/7086
INDEL	Breast	ZNF780A_K424Rfs*315	HLA-B08:01	FILERNPL	0.999	0.5213	0.1514	44.1	0.0742	2.02	1/888	1/7086
INDEL	Breast	ZNF780A_K424Rfs*315	HLA-A02:01	ILVTSHLNV	0.9876	0.8207	0.4916	55.5	0.686	2.02	1/888	1/7086
INDEL	Breast	ZNF780A_K424Rfs*315	HLA-A02:01	AQALFNIRV	0.9617	0.7382	0.0187	148.2	1.3694	2.02	1/888	1/7086
INDEL	Breast	ZNF780A_K424Rfs*315	HLA-A02:01	TLVRSPMNV	0.928	0.6198	0.4698	146	1.3551	2.02	1/888	1/7086
INDEL	Breast	ZNF780A_K424Rfs*315	HLA-A02:01	RLLDFTYNF	0.9159	0.5704	0.0166	89.8	0.9872	2.02	1/888	1/7086
INDEL	Breast	ZNF780A_K424Rfs*315	HLA-C07:01	VRNVGNSFV	0.7718	0.6824	1.2147	434.9	0.149	2.02	2/888	2/7086
INDEL	Breast	ZNF780A_K424Rfs*315	HLA-C07:01	VRNVGNSFV	0.7718	0.6824	1.2147	434.9	0.149	2.02	2/888	2/7086
INDEL	Breast	ZNF780A_K424Rfs*315	HLA-A02:01	TLFDIRNCI	0.9675	0.5005	0.184	129.3	1.2487	2.02	1/888	1/7086
INDEL	Breast	ZNF780A_K424Rfs*315	HLA-A02:01	ILVRNPLNV	0.9681	0.538	0.3217	110.9	1.1298	2.02	2/888	2/7086
INDEL	Breast	ZNF780A_K424Rfs*315	HLA-A02:01	ILVRNPLNV	0.9681	0.538	0.3217	110.9	1.1298	2.02	2/888	2/7086
INDEL	Breast	ZNF780A_K424Rfs*315	HLA-A02:01	FLVFPPSLI	0.9747	0.7904	0.1886	69.3	0.8218	2.02	1/888	1/7086
INDEL	Breast	ZNF780A_K424Rfs*315	HLA-A02:01	FILVTSHLNV	0.9855	0.8521	1.1173	41.3	0.5348	2.02	1/888	1/7086
INDEL	Breast	ZNF780A_K424Rfs*315	HLA-B08:01	ALFNIRVFTL	0.9607	0.8634	1.8773	366.1	0.5875	2.02	1/888	1/7086
INDEL	Breast	ZNF780A_K424Rfs*315	HLA-B08:01	FPNIRKLTQV	0.9913	0.6581	0.5491	161.5	0.2865	2.02	1/888	1/7086
INDEL	Breast	ZNF780A_K424Rfs*315	HLA-A02:01	FILERNPLNV	0.9975	0.5297	0.1596	25.6	0.3505	2.02	1/888	1/7086
INDEL	Breast	ZNF780A_K424Rfs*315	HLA-A02:01	FLVFPPSLIA	0.9727	0.8076	1.5343	60	0.7321	2.02	1/888	1/7086
INDEL	Breast	ZNF780A_K424Rfs*315	HLA-A02:01	TLFDIRNCILV	0.9959	0.5435	0.2841	37	0.4856	2.02	1/888	1/7086
INDEL	Breast	ZNF780A_K424Rfs*315	HLA-A02:01	FLVFPPSLIAI	0.9925	0.7417	1.2592	48.4	0.6126	2.02	1/888	1/7086
INDEL	Breast	C21orf91_E254Vfs*24	HLA-A02:01	ILWPHSSMSA	0.9408	0.7136	0.2319	45.7	0.5839	21.91	2/888	2/7086
INDEL	Breast	TLR7_H578Qfs*32	HLA-C07:01	RRNYSYAKL	0.9969	0.6667	0.2287	313.9	0.1136	1.25	2/888	2/7086
INDEL	Breast	TLR7_H578Qfs*32	HLA-C07:01	RRNYSYAKL	0.9969	0.6667	0.2287	313.9	0.1136	1.25	2/888	2/7086
INDEL	Breast	CLCN5_A237Yfs*21	HLA-A02:01	RLQQQLVYL	0.9887	0.5879	0.0142	30.5	0.4077	5.34	1/888	1/7086
INDEL	Breast	GPR174_M186Ifs*32	HLA-A02:01	NLAQSVVMI	0.966	0.6242	0.5512	239.7	1.8462	1.15	1/888	1/7086
INDEL	Breast	GPR174_M186Ifs*32	HLA-A02:01	AQSVVMIQV	0.9779	0.5909	0.0214	219	1.7426	1.15	1/888	1/7086
INDEL	Breast	GPR174_M186Ifs*32	HLA-A02:01	MIQVDHWRV	0.8841	0.6299	1.2177	144.1	1.3428	1.15	1/888	1/7086
INDEL	Breast	GPR174_M186Ifs*32	HLA-A02:01	ILYLEDGFI	0.9436	0.5412	1.566	254.8	1.9224	1.15	1/888	1/7086
INDEL	Breast	GPR174_M186Ifs*32	HLA-A02:01	YLEDGFITA	0.9943	0.8152	0.0267	14.8	0.1817	1.15	1/888	1/7086
INDEL	Breast	GPR174_M186Ifs*32	HLA-A02:01	VMIQVDHWRV	0.9861	0.6165	0.3302	81.2	0.9184	1.15	1/888	1/7086
INDEL	Breast	GPR174_M186Ifs*32	HLA-A02:01	ILYLEDGFITA	0.9988	0.6511	0.1734	44.5	0.5705	1.15	1/888	1/7086
INDEL	Breast	HDX_I175Kfs*40	HLA-C07:01	SRKEKLWKL	0.9853	0.7392	0.0383	196.2	0.0746	1.5	2/888	2/7086
INDEL	Breast	HDX_I175Kfs*40	HLA-C07:01	SRKEKLWKL	0.9853	0.7392	0.0383	196.2	0.0746	1.5	2/888	2/7086
INDEL	Breast	DDX26B_T581Ifs*7	HLA-A02:01	RLHIFWQSV	0.9785	0.7092	0.0558	118	1.1771	18.54	1/888	1/7086
INDEL	Breast	DDX26B_T581_F582insSA	HLA-B08:01	QPKRLHTSA	0.9908	0.5616	1.5485	254.8	0.4401	18.54	1/888	1/7086
INDEL	Breast	KMT2C_E4Gfs*54	HLA-A11:01	AAAAATTPR	0.994	0.5898	0.2253	74.5	0.4449	9.45	1/888	1/7086
INDEL	Breast	KMT2C_E4Gfs*54	HLA-B07:02	TPRGAWSPG	0.9947	0.6506	1.6226	63.8	0.208	9.45	1/888	1/7086
INDEL	Breast	KMT2C_E4Gfs*54	HLA-B07:02	GPASQRWRF	0.9967	0.6098	1.0418	367.6	0.6979	9.45	1/888	1/7086
INDEL	Breast	KMT2C_E4Gfs*54	HLA-A11:01	AAAAAATTPR	0.9933	0.587	0.3657	221.3	1.0723	9.45	1/888	1/7086
INDEL	Breast	KMT2C_E4Gfs*54	HLA-B07:02	GPASQRWRFPF	0.9996	0.5921	1.4215	217.1	0.4962	9.45	1/888	1/7086
INDEL	Breast	DEAF1_C515Lfs*43	HLA-B07:02	SPAHMRPV	0.9995	0.5329	1.1987	55.9	0.1885	10.78	1/888	1/7086
INDEL	Breast	DEAF1_C515Lfs*43	HLA-C07:02	HRLPQGQLL	0.8461	0.9791	0.1581	59.3	0.0284	10.78	1/888	1/7086
INDEL	Breast	DEAF1_C515Lfs*43	HLA-B07:02	SPAHMRPVS	0.993	0.597	0.7172	110.7	0.3195	10.78	1/888	1/7086
INDEL	Breast	DEAF1_C515Lfs*43	HLA-C07:02	HRLPQGQLLL	0.9785	0.9718	0.5144	381.8	0.2517	10.78	1/888	1/7086
INDEL	Breast	DEAF1_C515Lfs*43	HLA-C06:02	HRLPQGQLLL	0.9363	0.9947	0.6154	329.5	0.1128	10.78	1/888	1/7086
INDEL	Breast	DEAF1_C515Lfs*43	HLA-B07:02	SPAHMRPVSS	0.9954	0.6667	0.6535	414	0.7473	10.78	1/888	1/7086
INDEL	Breast	TNFAIP3_S729Tfs*90	HLA-A31:01	LACRTLVAR	0.9336	0.6204	0.6333	61.4	0.5152	46.43	1/888	1/7086
INDEL	Breast	TNFAIP3_S729Tfs*90	HLA-B15:01	TLVARSSAW	0.724	0.9156	1.9897	409.4	1.508	46.43	1/888	1/7086
INDEL	Breast	TNFAIP3_S729Tfs*90	HLA-C15:02	RSSAWSVSI	0.9996	0.8934	0.2573	18.8	0.009	46.43	1/888	1/7086
INDEL	Breast	TNFAIP3_S729Tfs*90	HLA-C03:03	RSSAWSVSI	0.9908	0.9922	1.3658	169.6	0.5042	46.43	1/888	1/7086
INDEL	Breast	TNFAIP3_S729Tfs*90	HLA-A31:01	AWSVSIPTR	0.8528	0.7403	0.7638	321	1.6269	46.43	1/888	1/7086
INDEL	Breast	TNFAIP3_S729Tfs*90	HLA-C15:02	SSVAGPPPV	0.9993	0.8672	0.5195	242.3	0.2631	46.43	1/888	1/7086
INDEL	Breast	TNFAIP3_S729Tfs*90	HLA-C03:03	SSVAGPPPV	0.9762	0.9871	0.5279	48.5	0.2052	46.43	1/888	1/7086
INDEL	Breast	TNFAIP3_S729Tfs*90	HLA-C15:02	SVAGPPPVI	0.9962	0.8386	0.296	280.4	0.3035	46.43	1/888	1/7086
INDEL	Breast	TNFAIP3_S729Tfs*90	HLA-C03:03	SVAGPPPVI	0.9784	0.9815	0.2543	135.5	0.4402	46.43	1/888	1/7086
INDEL	Breast	TNFAIP3_S729Tfs*90	HLA-C03:03	VAGPPPVII	0.994	0.9846	0.1242	351.4	0.7916	46.43	1/888	1/7086
INDEL	Breast	TNFAIP3_S729Tfs*90	HLA-C03:03	LAMPSATAT	0.9111	0.9919	0.7808	135.4	0.44	46.43	1/888	1/7086
INDEL	Breast	TNFAIP3_S729Tfs*90	HLA-B15:01	ATATATNAF	0.9949	0.9069	0.2367	33.7	0.1605	46.43	1/888	1/7086
INDEL	Breast	TNFAIP3_S729Tfs*90	HLA-C03:03	ATATATNAF	0.9696	0.9906	0.4646	172.3	0.5098	46.43	1/888	1/7086
INDEL	Breast	TNFAIP3_S729Tfs*90	HLA-C03:03	NAFSSSRCM	0.9963	0.9759	0.3898	198.5	0.5607	46.43	1/888	1/7086
INDEL	Breast	TNFAIP3_S729Tfs*90	HLA-A31:01	ILACRTLVAR	0.9787	0.7398	0.8538	103.7	0.777	46.43	1/888	1/7086
INDEL	Breast	TNFAIP3_S729Tfs*90	HLA-A31:01	SAWSVSIPTR	0.9637	0.6578	0.6408	53.7	0.4501	46.43	1/888	1/7086
INDEL	Breast	TNFAIP3_S729Tfs*90	HLA-C03:03	WALGPTGVSL	0.9996	0.9958	0.0282	51.5	0.2167	46.43	1/888	1/7086
INDEL	Breast	TNFAIP3_S729Tfs*90	HLA-A31:01	NILACRTLVAR	0.9378	0.825	1.5707	371.2	1.7629	46.43	1/888	1/7086
INDEL	Breast	TNFAIP3_S729Tfs*90	HLA-A31:01	ATATNAFSSSR	0.9858	0.5709	0.7014	177.1	1.1052	46.43	1/888	1/7086
INDEL	Breast	GATA3_S401Vfs*106	HLA-B07:02	APAIQPVL	0.9964	0.7344	0.0255	100.2	0.2968	1152.54	1/888	1/7086
INDEL	Breast	GATA3_S401Vfs*106	HLA-C15:02	AALSRHMVL	0.9989	0.8454	0.148	189.1	0.2064	1152.54	1/888	1/7086
INDEL	Breast	GATA3_S401Vfs*106	HLA-C03:03	AALSRHMVL	0.9995	0.986	0.0888	26.1	0.115	1152.54	1/888	1/7086
INDEL	Breast	GATA3_S401Vfs*106	HLA-C03:03	VLPEPHLAL	0.9962	0.9923	0.0452	160.2	0.4872	1152.54	1/888	1/7086
INDEL	Breast	GATA3_S401Vfs*106	HLA-C03:03	HAHADAPAI	0.984	0.9944	0.3124	28	0.1228	1152.54	1/888	1/7086
INDEL	Breast	GATA3_S401Vfs*106	HLA-C03:03	MVLPEPHLAL	0.9997	0.9914	0.1761	152.2	0.4728	1152.54	1/888	1/7086
INDEL	Breast	GATA3_S401Vfs*106	HLA-B07:02	QPVLWTTPPL	0.9713	0.6432	0.7226	32.7	0.1156	1152.54	1/888	1/7086
INDEL	Breast	RASSF2_L24Afs*10	HLA-C03:03	LASEDLQLV	0.963	0.9925	0.7788	446.4	0.9275	12.96	1/888	1/7086
INDEL	Breast	RASSF2_L24Afs*10	HLA-C15:02	ASEDLQLVL	0.9856	0.8958	0.1886	421.6	0.4521	12.96	1/888	1/7086
INDEL	Breast	RASSF2_L24Afs*10	HLA-C03:03	LASEDLQLVL	0.9996	0.9937	0.879	432.3	0.9027	12.96	1/888	1/7086
INDEL	Breast	C11orf49_F152Sfs*21	HLA-C07:02	YYSESWTVWL	0.7484	0.9649	1.9404	393.4	0.2593	9.26	1/888	1/7086
INDEL	Breast	ADD1_D603Afs*56	HLA-B35:01	LPSSWRKTL	0.9309	0.923	0.1418	445.3	0.8188	39.01	2/888	2/7086
INDEL	Breast	ADD1_D603Afs*56	HLA-B35:01	LPSSWRKTL	0.9309	0.923	0.1418	445.3	0.8188	39.01	2/888	2/7086
INDEL	Breast	MRPL46_S244Pfs*21	HLA-B08:01	FPRLGIRAI	0.9877	0.5963	0.0299	83.8	0.1482	8.62	1/888	1/7086
INDEL	Breast	MRPL46_S244Pfs*21	HLA-B08:01	SLRMSWVTI	0.959	0.5615	1.0016	242.8	0.4225	8.62	1/888	1/7086
INDEL	Breast	MRPL46_S244Pfs*21	HLA-B08:01	FPRLGIRAIM	0.9864	0.6461	0.5512	184.5	0.327	8.62	1/888	1/7086
INDEL	Breast	CACHD1_H1201Kfs*38	HLA-C07:02	YRRPSRYTL	0.8641	0.924	0.1149	24.5	0.0095	4.36	1/888	1/7086
INDEL	Breast	CACHD1_H1201Kfs*38	HLA-C07:02	RRPSRYTLSM	0.9945	0.9122	0.8492	263.5	0.1726	4.36	1/888	1/7086
INDEL	Breast	CACHD1_H1201Kfs*38	HLA-C07:02	YRRPSRYTLSM	0.9906	0.902	1.2301	197.9	0.128	4.36	1/888	1/7086
INDEL	Breast	FPGT_Y370Lfs*17	HLA-C07:02	SHWNNRRIF	0.6312	0.9496	0.6392	425.3	0.2793	10.55	1/888	1/7086
INDEL	Breast	FPGT_Y370Lfs*17	HLA-C07:02	RRIFVLLYL	0.9842	0.8968	0.1527	236.5	0.1555	10.55	1/888	1/7086
INDEL	Breast	IFI44L_Q88Lfs*21	HLA-A02:01	SLLLSVSSL	0.8873	0.5658	0.4263	129.4	1.2493	221.82	1/888	2/7086
INDEL	Breast	IFI44L_Q88Lfs*21	HLA-A02:01	SLWFSLLLSV	0.9726	0.6312	0.3398	8	0.0828	221.82	1/888	2/7086
INDEL	Breast	IFI44L_Q88Lfs*21	HLA-C03:04	FSLLLSVSSL	0.9986	0.9893	1.9339	281.3	0.6956	221.82	1/888	1/7086
INDEL	Breast	SYDE2_L301Qfs*58	HLA-C07:02	IRNAKIEVI	0.9328	0.8955	0.1435	253.9	0.1667	2.93	1/888	1/7086
INDEL	Breast	SYDE2_L301Qfs*58	HLA-C03:04	VIYPSHLCL	0.9951	0.9906	0.0995	47.7	0.2019	2.93	1/888	1/7086
INDEL	Breast	SYDE2_L301Qfs*58	HLA-C07:02	IYPSHLCLY	0.568	0.8839	0.0794	195.2	0.1259	2.93	1/888	1/7086
INDEL	Breast	SYDE2_L301Qfs*58	HLA-C03:04	YPSHLCLYL	0.9553	0.9729	0.7267	222.1	0.6013	2.93	1/888	1/7086
INDEL	Breast	SYDE2_L301Qfs*58	HLA-C03:04	YLNISYHSL	0.9642	0.9792	0.259	61	0.2498	2.93	1/888	1/7086
INDEL	Breast	SYDE2_L301Qfs*58	HLA-A02:01	KSTVHMWYV	0.8553	0.507	0.3199	154.1	1.406	2.93	2/888	2/7086
INDEL	Breast	SYDE2_L301Qfs*58	HLA-C03:04	TVHMWYVTL	0.9891	0.9861	0.6973	325.3	0.7581	2.93	1/888	1/7086
INDEL	Breast	SYDE2_L301Qfs*58	HLA-A02:01	HMWYVTLQT	0.8711	0.5909	1.2592	145.8	1.354	2.93	2/888	2/7086
INDEL	Breast	SYDE2_L301Qfs*58	HLA-C07:02	IYPSHLCLYL	0.7554	0.9423	0.5583	400.5	0.2639	2.93	1/888	1/7086
INDEL	Breast	SYDE2_L301Qfs*58	HLA-A02:01	HMWYVTLQTL	0.9397	0.6462	1.1421	45.9	0.5852	2.93	2/888	2/7086
INDEL	Breast	GBP3_K395Nfs*53	HLA-C07:02	SRSIIRSLL	0.8963	0.9288	0.0835	162.3	0.0991	30.77	1/888	1/7086
INDEL	Breast	GBP3_K395Nfs*53	HLA-C03:04	SIIRSLLSF	0.9883	0.988	0.7554	393.8	0.8514	30.77	1/888	1/7086
INDEL	Breast	GBP3_K395Nfs*53	HLA-C07:02	RRSEGGNLF	0.8083	0.9827	0.2319	151.3	0.0907	30.77	1/888	1/7086
INDEL	Breast	GBP3_K395Nfs*53	HLA-A02:01	GLLSLYSEA	0.9837	0.6379	0.4426	83.5	0.9377	30.77	1/888	1/7086
INDEL	Breast	GBP3_K395Nfs*53	HLA-B07:02	ATRPGEKVL	0.9681	0.7359	0.4018	440.7	0.7732	30.77	1/888	1/7086
INDEL	Breast	GBP3_K395Nfs*53	HLA-A02:01	NLFETRGLLSL	0.9707	0.6061	0.1182	49.2	0.6214	30.77	1/888	1/7086
INDEL	Breast	LRRC8D_S99Ifs*13	HLA-C03:04	TTNDIILEI	0.9966	0.9893	0.0396	375.4	0.8254	50.16	1/888	1/7086
INDEL	Breast	LRRC8D_S99Ifs*13	HLA-A02:01	ILWDICCDT	0.9502	0.5843	1.2078	151.4	1.3905	50.16	1/888	1/7086
INDEL	Breast	TRMT13_D139Nfs*15	HLA-C03:04	RSYYVPSSI	0.9843	0.9916	0.1566	51	0.2147	11.35	1/888	1/7086
INDEL	Breast	TRMT13_H140Lfs*17	HLA-C03:04	KSYYVPSSI	0.9857	0.9872	0.2239	81	0.3149	11.35	1/888	1/7086
INDEL	Breast	GOLPH3L_L123_K124insFTIPKMW	HLA-A02:01	VLLDETLFT	0.9828	0.6684	0.4183	55.9	0.6898	30.3	1/888	1/7086
INDEL	Breast	GOLPH3L_L123_K124insFTIPKMW	HLA-A02:01	LLDETLFTI	0.9958	0.5693	0.0187	4.6	0.0257	30.3	1/888	1/7086
INDEL	Breast	GOLPH3L_L123_K124insFTIPKMW	HLA-A02:01	VLLDETLFTI	0.9979	0.6322	0.0808	12.2	0.1467	30.3	1/888	1/7086
INDEL	Breast	ASH1L_T1057_V1058insF	HLA-C07:02	GRKPKTFVL	0.916	0.9386	0.0671	209.3	0.1366	21.67	1/888	1/7086
INDEL	Breast	DIEXF_L495Tfs*31	HLA-A02:01	MQNWEHVTV	0.9911	0.5258	0.2025	107.2	1.1037	16.32	1/888	1/7086
INDEL	Breast	DIEXF_L495Tfs*31	HLA-C03:04	MQNWEHVTV	0.5421	0.991	1.4776	445.5	0.926	16.32	1/888	1/7086
INDEL	Breast	DIEXF_L495Tfs*31	HLA-B07:02	TPGLTWGRL	0.993	0.5019	1.1	125.1	0.3478	16.32	1/888	1/7086
INDEL	Breast	DIEXF_L495Tfs*31	HLA-A02:01	YLMQNWEHVT	0.9572	0.6591	1.156	59.5	0.7274	16.32	1/888	1/7086
INDEL	Breast	DIEXF_L495Tfs*31	HLA-A02:01	YLMQNWEHVTV	0.9997	0.6076	0.1994	16	0.1986	16.32	1/888	1/7086
INDEL	Breast	TRAF5_R101Nfs*18	HLA-C07:02	MRSPQLICI	0.8902	0.751	0.0778	246.2	0.1619	6.26	1/888	1/7086
INDEL	Breast	TP53BP2_K729Pfs*11	HLA-B07:02	RPRNCLTHQGL	0.9999	0.7706	0.1212	13.8	0.0419	59.68	1/888	1/7086
INDEL	Breast	SIPA1L2_N392Kfs*84	HLA-A02:01	KLAWMPMRV	0.9957	0.8518	0.0021	9.8	0.1138	23.37	1/888	1/7086
INDEL	Breast	SIPA1L2_N392Kfs*84	HLA-C03:04	LAWMPMRVM	0.999	0.9943	0.3057	34.2	0.1564	23.37	1/888	1/7086
INDEL	Breast	SIPA1L2_N392Kfs*84	HLA-C03:04	MGKVTTSSL	0.9974	0.989	0.7683	285.4	0.7015	23.37	1/888	1/7086
INDEL	Breast	SIPA1L2_N392Kfs*84	HLA-C03:04	VTTSSLVVL	0.9991	0.9692	0.5365	105.4	0.3753	23.37	1/888	1/7086
INDEL	Breast	SIPA1L2_N392Kfs*84	HLA-C03:04	TSSLVVLTL	0.9994	0.9863	0.0848	235	0.6239	23.37	1/888	1/7086
INDEL	Breast	SIPA1L2_N392Kfs*84	HLA-B40:01	LEGKATGGL	0.9745	0.6453	0.9405	279.4	0.4887	23.37	1/888	1/7086
INDEL	Breast	SIPA1L2_N392Kfs*84	HLA-C03:04	KATGGLRSL	0.9987	0.9925	0.1761	58.6	0.242	23.37	1/888	1/7086
INDEL	Breast	SIPA1L2_N392Kfs*84	HLA-C03:04	RSLEPTHPL	0.9986	0.9967	0.0697	21.3	0.0916	23.37	1/888	1/7086
INDEL	Breast	SIPA1L2_N392Kfs*84	HLA-C03:04	LSVLGKAAL	0.9995	0.9483	0.4277	33.6	0.1535	23.37	1/888	1/7086
INDEL	Breast	SIPA1L2_N392Kfs*84	HLA-C03:04	SALTAQMQV	0.9308	0.9944	0.834	241.5	0.6348	23.37	1/888	1/7086
INDEL	Breast	SLC4A1AP_K588Vfs*28	HLA-A02:01	KSLHCLYLV	0.9666	0.6798	0.3925	103.3	1.079	65.39	1/888	1/7086
INDEL	Breast	BIRC6_L4689Sfs*24	HLA-C03:04	TSSFSTTIL	0.9979	0.9791	0.7702	137.7	0.4448	33.13	1/888	1/7086
INDEL	Breast	BIRC6_L4689Sfs*24	HLA-C03:04	SSFSTTILL	0.9984	0.9872	0.4096	33.3	0.1522	33.13	1/888	1/7086
INDEL	Breast	BIRC6_L4689Sfs*24	HLA-C03:04	STTILLSTL	0.9966	0.9838	0.7533	415.8	0.8809	33.13	1/888	1/7086
INDEL	Breast	BIRC6_L4689Sfs*24	HLA-A02:01	LLSTLIASV	0.9961	0.5759	0.0299	6.5	0.058	33.13	1/888	1/7086
INDEL	Breast	BIRC6_L4689Sfs*24	HLA-C03:04	IASVGVCPV	0.9834	0.9834	0.6891	33.9	0.1552	33.13	1/888	1/7086
INDEL	Breast	BIRC6_L4689Sfs*24	HLA-A02:01	LIASVGVCPV	0.9838	0.6031	0.8607	47.9	0.6071	33.13	1/888	1/7086
INDEL	Breast	BIRC6_L4689Sfs*24	HLA-A02:01	LLSTLIASVGV	0.9858	0.5921	1.8581	66.5	0.797	33.13	1/888	1/7086
INDEL	Breast	BIRC6_L4689Sfs*24	HLA-A02:01	TLIASVGVCPV	0.9919	0.5927	1.5578	45.4	0.5802	33.13	1/888	1/7086
INDEL	Breast	FOXN2_K374Sfs*42	HLA-A02:01	TLLEFVHV	0.9989	0.5484	0.557	70.3	0.8299	21.14	1/888	1/7086
INDEL	Breast	FOXN2_K374Sfs*42	HLA-A02:01	STLLEFVHV	0.9835	0.6736	0.3318	268.7	1.9843	21.14	1/888	1/7086
INDEL	Breast	USP34_S431Ffs*14	HLA-C03:04	YIHDLFPFI	0.9619	0.9774	0.2557	260.7	0.6652	21.04	1/888	1/7086
INDEL	Breast	USP34_S431Ffs*14	HLA-C07:02	SRYIHDLFPF	0.9973	0.9063	0.5779	377.7	0.249	21.04	1/888	1/7086
INDEL	Breast	VPS54_F171_A172insIVLANI	HLA-A02:01	FMKPDFIVL	0.9938	0.5504	0.0452	42.7	0.5511	61.31	1/888	1/7086
INDEL	Breast	VPS54_F171_A172insIVLANI	HLA-C07:02	FMKPDFIVL	0.7986	0.9595	0.1746	414.9	0.273	61.31	1/888	1/7086
INDEL	Breast	VPS54_F171_A172insIVLANI	HLA-C03:04	FMKPDFIVL	0.9964	0.9887	0.0875	42	0.1851	61.31	1/888	1/7086
INDEL	Breast	VPS54_F171_A172insIVLANI	HLA-C03:04	FIVLANIAL	0.9952	0.9884	0.4883	55.3	0.2306	61.31	1/888	1/7086
INDEL	Breast	VPS54_F171_A172insIVLANI	HLA-C03:04	IALDDSLTF	0.9991	0.984	0.3137	22.8	0.0992	61.31	1/888	1/7086
INDEL	Breast	TIA1_S86Rfs*11	HLA-C03:04	WATTPSRQL	0.9994	0.9797	0.1718	54.4	0.2275	53.69	1/888	1/7086
INDEL	Breast	MPHOSPH10_N512_F513insK	HLA-A02:01	ALSNKFHFI	0.99	0.5251	0.0025	25.7	0.3509	68.79	1/888	1/7086
INDEL	Breast	MPHOSPH10_F513delinsYMYMALLTV	HLA-C03:04	LSNYMYMAL	0.996	0.9861	0.8723	20.7	0.0884	68.79	1/888	1/7086
INDEL	Breast	MPHOSPH10_F513delinsYMYMALLTV	HLA-C03:04	MALLTVHFI	0.9481	0.9888	0.7356	99.7	0.3626	68.79	1/888	1/7086
INDEL	Breast	KDM3A_P1321Hfs*18	HLA-C03:04	SSFGKHEIM	0.9994	0.9886	0.4311	98.8	0.3603	24.24	1/888	1/7086
INDEL	Breast	ANKRD36_S303Ifs*14	HLA-C03:04	ISISETTGL	0.9996	0.9899	0.4213	47.1	0.1995	1.66	1/888	1/7086
INDEL	Breast	ZEB2_S885_M886insFLHS	HLA-C03:04	STNPVFSFL	0.9975	0.9957	0.1688	118.9	0.4034	5.75	1/888	1/7086
INDEL	Breast	ZEB2_S885_M886insFLHS	HLA-C03:04	FSFLHSMNPF	0.9988	0.9918	1.6274	72.7	0.29	5.75	1/888	1/7086
INDEL	Breast	ZEB2_S885_M886insFLHS	HLA-A02:01	FLHSMNPFSA	0.9924	0.6011	0.2727	34	0.4517	5.75	1/888	1/7086
INDEL	Breast	EPC2_E133Tfs*5	HLA-C07:02	NRLNRKMTY	0.8356	0.9116	0.0658	456.9	0.2976	20.47	1/888	1/7086
INDEL	Breast	ITGA6_E626_I627insLVLEY	HLA-C03:04	IPITASVEL	0.9984	0.9842	0.2778	122.2	0.4112	228.34	1/888	1/7086
INDEL	Breast	ITGA6_E626_I627insLVLEY	HLA-C03:04	ITASVELVL	0.9996	0.9894	0.3028	57.1	0.2368	228.34	1/888	1/7086
INDEL	Breast	ITGA6_E626_I627insLVLEY	HLA-B07:02	RPIPITASVEL	0.9999	0.5701	0.1775	28.8	0.1048	228.34	1/888	1/7086
INDEL	Breast	RAPH1_C441delinsLGGG	HLA-A02:01	VLGGGFLQL	0.9874	0.6654	0.3398	59.8	0.7307	1.92	1/888	1/7086
INDEL	Breast	RAPH1_C441delinsLGGG	HLA-A02:01	LVLGGGFLQL	0.9755	0.5395	0.7415	265.5	1.9704	1.92	1/888	1/7086
INDEL	Breast	CUL3_N185Ifs*18	HLA-C07:02	FRSRRKISL	0.9182	0.887	0.2778	46.5	0.019	17.45	1/888	1/7086
INDEL	Breast	CUL3_R184_N185insVQYAIHIQN	HLA-C07:02	IRVQYAIHI	0.9491	0.8333	0.2604	360.5	0.2385	17.45	1/888	1/7086
INDEL	Breast	CUL3_R184_N185insVQYAIHIQN	HLA-C03:04	YAIHIQNNA	0.9842	0.9938	0.4769	385.6	0.8399	17.45	1/888	1/7086
INDEL	Breast	TRIP12_L873Yfs*48	HLA-C03:04	FADAEYDITF	0.9996	0.9898	0.2882	169.1	0.5031	80.15	1/888	1/7086
INDEL	Breast	ARMC9_R393Tfs*31	HLA-C03:04	YMATGSSM	0.9973	0.9927	1.3176	327.5	0.7611	4.22	1/888	1/7086
INDEL	Breast	ARMC9_R393Tfs*31	HLA-A02:01	YMATGSSML	0.9754	0.5604	0.2287	14.1	0.1721	4.22	1/888	1/7086
INDEL	Breast	ARMC9_R393Tfs*31	HLA-C03:04	YMATGSSML	0.992	0.9918	0.9226	14	0.0547	4.22	1/888	1/7086
INDEL	Breast	ARMC9_R393Tfs*31	HLA-C03:04	MATGSSMLL	0.9995	0.9899	0.3107	7.1	0.0264	4.22	1/888	1/7086
INDEL	Breast	ARMC9_R393Tfs*31	HLA-C03:04	YMATGSSMLL	0.9947	0.987	1.4776	136.4	0.4421	4.22	1/888	1/7086
INDEL	Breast	LMCD1_V239Tfs*78	HLA-B07:02	GPGAPAAM	0.9997	0.576	0.8127	362.2	0.6921	18.95	1/888	1/7086
INDEL	Breast	LMCD1_V239Tfs*78	HLA-C03:04	LSDPSKETM	0.9994	0.992	0.1227	447	0.9284	18.95	1/888	1/7086
INDEL	Breast	LMCD1_V239Tfs*78	HLA-C03:04	TSSGTPPAL	0.9994	0.9868	0.4018	60.3	0.2476	18.95	1/888	1/7086
INDEL	Breast	LMCD1_V239Tfs*78	HLA-C03:04	MVHPGAAAI	0.9959	0.987	0.2925	8.9	0.0323	18.95	1/888	1/7086
INDEL	Breast	LMCD1_V239Tfs*78	HLA-B07:02	HPGAAAITA	0.9925	0.5423	0.1625	401.9	0.7349	18.95	1/888	1/7086
INDEL	Breast	NR2C2_K183Tfs*12	HLA-B40:01	LEMGMTLVL	0.9977	0.5933	0.3914	6.6	0.008	13.59	1/888	1/7086
INDEL	Breast	NR2C2_K183Tfs*12	HLA-B40:01	LEMGMTLVLL	0.9841	0.6094	0.7945	18.1	0.0384	13.59	1/888	1/7086
INDEL	Breast	ANKRD28_A977Rfs*8	HLA-C03:04	VADCLRLSF	0.9984	0.9818	0.3769	213.8	0.5876	21.68	1/888	1/7086
INDEL	Breast	TOP2B_K677_K678insLFIY	HLA-C03:04	LAFSKKLFI	0.9853	0.9895	0.2684	120	0.4062	58.38	1/888	1/7086
INDEL	Breast	ZCWPW2_L98_G99insYPTKTTY	HLA-C03:04	KTTYGSLVL	0.9752	0.9948	1.0266	103.2	0.3704	2.07	1/888	1/7086
INDEL	Breast	ZCWPW2_L98_G99insYPTKTTY	HLA-A02:01	TTYGSLVLV	0.9781	0.5028	0.2197	68.2	0.8118	2.07	1/888	1/7086
INDEL	Breast	ZNF860_S324Rfs*75	HLA-C03:04	FANQILKDI	0.993	0.9879	0.5094	171.7	0.5086	4.24	1/888	1/7086
INDEL	Breast	ZNF860_S324Rfs*75	HLA-C03:04	VIHTSHNTL	0.993	0.9908	0.3514	120.6	0.4075	4.24	1/888	1/7086
INDEL	Breast	ZNF860_S324Rfs*75	HLA-C03:04	HTSHNTLEF	0.9918	0.9928	0.3367	225.9	0.6082	4.24	1/888	1/7086
INDEL	Breast	ZNF860_S324Rfs*75	HLA-C03:04	SVMSVAKPL	0.9976	0.9895	0.5077	46	0.1966	4.24	1/888	1/7086
INDEL	Breast	ZNF860_S324Rfs*75	HLA-A02:01	FILERNHTNV	0.9863	0.5471	0.8208	52.2	0.6529	4.24	1/888	1/7086
INDEL	Breast	ZNF860_S324Rfs*75	HLA-A02:01	FTLERNLTSV	0.9924	0.5507	0.1272	21.5	0.2941	4.24	1/888	1/7086
INDEL	Breast	ZNF860_S324Rfs*75	HLA-A02:01	SVMSVAKPLV	0.9557	0.5409	0.4001	139.7	1.313	4.24	1/888	1/7086
INDEL	Breast	ASB14_L369Hfs*15	HLA-C03:04	FAVSNSDHI	0.9957	0.9887	0.5583	17.5	0.0729	1.26	1/888	1/7086
INDEL	Breast	ASB14_L369Hfs*15	HLA-C03:04	FAVSNSDHII	0.9951	0.9881	0.9203	265.5	0.6725	1.26	1/888	1/7086
INDEL	Breast	ASB14_D306Rfs*36	HLA-C03:04	ILIPVTRIL	0.9937	0.9881	0.1317	154.2	0.4765	1.26	1/888	1/7086
INDEL	Breast	ASB14_D306Rfs*36	HLA-C03:04	SAWNSSSRL	0.9995	0.9943	0.5815	36.4	0.1654	1.26	1/888	1/7086
INDEL	Breast	ASB14_D306Rfs*36	HLA-A02:01	ILLPLSRVGSV	0.9865	0.6725	1.9129	247.3	1.8862	1.26	1/888	1/7086
INDEL	Breast	POLQ_S1231Yfs*15	HLA-C07:02	SYINRDYSL	0.6854	0.8454	0.0084	44.3	0.018	3.28	1/888	1/7086
INDEL	Breast	POLQ_S1231Yfs*15	HLA-C03:04	YSLKVQMLL	0.9991	0.9549	0.2009	30.6	0.1378	3.28	1/888	1/7086
INDEL	Breast	PARP15_M477delinsIL	HLA-C03:04	FSILTTCNL	0.9982	0.9858	0.5419	14.6	0.0586	2.77	1/888	1/7086
INDEL	Breast	PARP15_M477delinsIL	HLA-A02:01	SLNFQSTFSI	0.9559	0.712	1.5116	53.8	0.6696	2.77	1/888	1/7086
INDEL	Breast	PPP2R3A_E453Dfs*64	HLA-C07:02	HRAEFPDCM	0.8076	0.9703	0.2793	309.5	0.2042	7.36	1/888	1/7086
INDEL	Breast	PPP2R3A_E453Dfs*64	HLA-C07:02	VRYLRNHLL	0.8918	0.8933	0.0697	28.9	0.0102	7.36	1/888	1/7086
INDEL	Breast	PPP2R3A_E453Dfs*64	HLA-C07:02	LRNHLLIYL	0.9695	0.901	0.0861	110.3	0.0597	7.36	1/888	1/7086
INDEL	Breast	ARMC8_R419Kfs*16	HLA-A02:01	QQLKYIEPV	0.9285	0.7053	0.3956	36.7	0.4821	13.15	1/888	1/7086
INDEL	Breast	ARMC8_R419Kfs*16	HLA-C07:02	KYIEPVSRI	0.5375	0.9624	0.0344	470.3	0.3072	13.15	1/888	1/7086
INDEL	Breast	ARMC8_R419Kfs*16	HLA-C03:04	YIEPVSRIM	0.9993	0.9912	0.2122	120	0.406	13.15	1/888	1/7086
INDEL	Breast	ARMC8_R419Kfs*16	HLA-C07:02	SRIMLFGNL	0.8279	0.9549	0.5491	465.3	0.3033	13.15	1/888	1/7086
INDEL	Breast	P2RY12_S101Ifs*19	HLA-C03:04	FISQCISVF	0.9948	0.9791	0.6854	146.9	0.4628	1.51	1/888	1/7086
INDEL	Breast	CCNL1_K351Nfs*16	HLA-A02:01	ILYVQNITNL	0.9672	0.566	0.585	243.9	1.8683	16.52	1/888	1/7086
INDEL	Breast	YEATS2_R179_D180insMNNYVKFLTLTARD	HLA-C07:02	GRMNNYVKF	0.9023	0.7449	0.1498	267.2	0.1749	21.07	1/888	1/7086
INDEL	Breast	YEATS2_R179_D180insMNNYVKFLTLTARD	HLA-C07:02	RMNNYVKFL	0.869	0.8235	0.4113	297.8	0.196	21.07	1/888	1/7086
INDEL	Breast	ANKRD17_S1933delinsRNP	HLA-B07:02	RPLRNPPA	0.9995	0.6426	0.9711	492.3	0.8235	51.48	1/888	2/7086
INDEL	Breast	ANKRD17_S1933delinsRNP	HLA-B07:02	RPLRNPPARA	0.9909	0.735	0.458	156.6	0.3994	51.48	1/888	2/7086
INDEL	Breast	SEC31A_P1045Ifs*43	HLA-C03:04	SAPVIVATV	0.9786	0.991	0.0618	374.5	0.824	100.67	1/888	1/7086
INDEL	Breast	SEC31A_P1045Ifs*43	HLA-C03:04	IVATVKPVF	0.9787	0.9646	0.4529	464.3	0.9578	100.67	1/888	1/7086
INDEL	Breast	SEC31A_P1045Ifs*43	HLA-B07:02	WPALPWRTA	0.9904	0.6625	0.1354	40.9	0.1439	100.67	1/888	1/7086
INDEL	Breast	WDFY3_Q424Vfs*38	HLA-C07:02	RRFLNSQKY	0.8674	0.8203	0.0142	311.9	0.2059	12.02	1/888	1/7086
INDEL	Breast	C4orf29_I84Nfs*10	HLA-C03:04	YVPDNHQSI	0.9917	0.9654	0.1514	104.6	0.3735	5.74	1/888	1/7086
INDEL	Breast	DNAH5_H2748Sfs*33	HLA-C03:04	FGVIGVGSL	0.9986	0.9936	0.458	33.9	0.155	1	1/888	1/7086
INDEL	Breast	DNAH5_H2748Sfs*33	HLA-C03:04	IGASDTPTM	0.9968	0.9565	0.704	116	0.3972	1	1/888	1/7086
INDEL	Breast	DNAH5_H2748Sfs*33	HLA-A03:01	GVIGVGSLLY	0.982	0.6354	0.5619	326.1	0.904	1	1/888	1/7086
INDEL	Breast	DNAH5_G2747Dfs*15	HLA-C03:04	IGVDLATTV	0.9881	0.9826	0.7594	325.5	0.7584	1	1/888	1/7086
INDEL	Breast	HSPB3_T102delinsMLS	HLA-C07:02	SRMDEHGFI	0.8409	0.9033	0.8317	294.9	0.1941	4.15	1/888	1/7086
INDEL	Breast	PIK3R1_K567_L570del	HLA-C07:02	KRMNSIIQL	0.9861	0.9759	0.0299	84.8	0.0449	156.76	1/888	1/7086
INDEL	Breast	POLK_I156Nfs*13	HLA-C03:04	RAAMPGFNI	0.9511	0.9838	0.8399	127.8	0.4237	5.69	1/888	1/7086
INDEL	Breast	POLK_I156Nfs*13	HLA-A02:01	AMPGFNIRL	0.9754	0.6181	0.0427	95.5	1.0282	5.69	1/888	1/7086
INDEL	Breast	POLK_I156Nfs*13	HLA-C03:04	AAMPGFNIRL	0.9997	0.9854	0.1872	227.5	0.6109	5.69	1/888	1/7086
INDEL	Breast	RAD50_D1007Vfs*23	HLA-C07:02	MRLMRQVPF	0.9429	0.9317	0.3028	92.3	0.0504	59.51	1/888	1/7086
INDEL	Breast	RAD50_D1007Vfs*23	HLA-C03:04	RQVPFSPIL	0.8967	0.981	0.4367	288.1	0.7054	59.51	1/888	1/7086
INDEL	Breast	RAD50_D1007Vfs*23	HLA-C07:02	MRQVPFSPIL	0.9733	0.956	1.9543	378.6	0.2496	59.51	1/888	1/7086
INDEL	Breast	RBM22_E124Ffs*7	HLA-C07:02	YYTQNMERF	0.5333	0.871	0.0356	199.4	0.1292	68.19	1/888	1/7086
INDEL	Breast	ZBED9_V268Dfs*25	HLA-A02:01	LLGILTTV	0.9914	0.7448	1.4654	254.8	1.9225	10.18	1/888	1/7086
INDEL	Breast	ZBED9_V268Dfs*25	HLA-A02:01	DLLGILTTV	0.9317	0.7879	0.1688	153.3	1.402	10.18	1/888	1/7086
INDEL	Breast	ZNF318_E962Kfs*32	HLA-C03:04	RSWELTSSI	0.9914	0.9925	0.7058	104.4	0.3731	29.67	1/888	1/7086
INDEL	Breast	ZNF318_E962Kfs*32	HLA-C03:04	TSSINPRSL	0.9988	0.9939	0.3987	301.8	0.7256	29.67	1/888	1/7086
INDEL	Breast	NT5E_L475Wfs*24	HLA-A02:01	KLDVWVAFA	0.9912	0.6204	0.3898	34.6	0.4583	30.19	1/888	1/7086
INDEL	Breast	NT5E_L475Wfs*24	HLA-C03:04	VAFAPSVEC	0.9466	0.9924	0.6333	486.7	0.994	30.19	1/888	1/7086
INDEL	Breast	NT5E_L475Wfs*24	HLA-C03:04	FAPSVECPV	0.9549	0.9871	0.5886	60.5	0.2483	30.19	1/888	1/7086
INDEL	Breast	NT5E_L475Wfs*24	HLA-C03:04	SVECPVMTL	0.9948	0.9834	0.463	491.5	1.001	30.19	1/888	1/7086
INDEL	Breast	NT5E_L475Wfs*24	HLA-C03:04	FAPSVECPVM	0.9953	0.9815	0.4933	409.8	0.873	30.19	1/888	1/7086
INDEL	Breast	LAMA4_I565Mfs*14	HLA-C03:04	NASGIYAEM	0.9994	0.9839	0.0226	71.7	0.2868	19.87	1/888	1/7086
INDEL	Breast	LAMA4_I565Mfs*14	HLA-C03:04	YAEMMDSQM	0.9982	0.9888	0.7616	58.9	0.243	19.87	1/888	1/7086
INDEL	Breast	TBC1D32_E130Nfs*41	HLA-C03:04	KAIVTAQTI	0.9882	0.9825	0.251	39.7	0.1779	5.15	1/888	1/7086
INDEL	Breast	TBC1D32_E130Nfs*41	HLA-C03:04	IVTAQTIAL	0.9985	0.9405	0.348	37.4	0.1695	5.15	1/888	1/7086
INDEL	Breast	HSF2_Q92Lfs*46	HLA-B40:01	VEFLLQIVA	0.8299	0.7108	0.5999	439.5	0.6468	21.4	1/888	1/7086
INDEL	Breast	HSF2_Q92Lfs*46	HLA-C03:04	VAHPRPESI	0.9956	0.9854	0.2054	82.7	0.3197	21.4	1/888	1/7086
INDEL	Breast	HSF2_Q92Lfs*46	HLA-B40:01	QERDGPVEFL	0.9578	0.5304	0.3624	388.8	0.6049	21.4	1/888	1/7086
INDEL	Breast	L3MBTL3_R190_D191insISYIRNT	HLA-C03:04	YIRNTDDEM	0.9766	0.9744	1.1277	237.6	0.6282	5.57	1/888	1/7086
INDEL	Breast	AHI1_N489Tfs*19	HLA-C03:04	NATPALHQL	0.9997	0.9833	0.1112	138.7	0.4468	10.31	1/888	1/7086
INDEL	Breast	MAP3K5_Y858delinsFIH	HLA-B07:02	GPRGFIHGKAA	0.9998	0.5388	0.1656	348	0.6765	25.35	1/888	1/7086
INDEL	Breast	REPS1_I130Sfs*12	HLA-C03:04	GSYSGVSLF	0.9236	0.9908	0.7247	239	0.6305	31.6	1/888	1/7086
INDEL	Breast	HIVEP2_M1888Yfs*7	HLA-C03:04	KAAEKHSYV	0.9129	0.9932	0.9455	145.8	0.4608	21.99	1/888	1/7086
INDEL	Breast	SYNE1_F213Kfs*20	HLA-A03:01	KSWRSGVAK	0.9954	0.5229	0.348	36.1	0.1273	2.79	1/888	1/7086
INDEL	Breast	SYNE1_F213Kfs*20	HLA-C07:02	WRSGVAKTF	0.8269	0.9808	0.0861	236	0.1552	2.79	1/888	1/7086
INDEL	Breast	SCIN_G659Ffs*20	HLA-C03:04	YVYMVLAKM	0.987	0.9549	1.418	124.6	0.4167	2.96	1/888	1/7086
INDEL	Breast	ANLN_E657Afs*35	HLA-B07:02	VPRAAVNL	0.9998	0.7163	0.3254	73.8	0.2344	48.46	1/888	1/7086
INDEL	Breast	ANLN_E657Afs*35	HLA-B07:02	RTRVPRAAV	0.9979	0.6378	0.5365	37.5	0.1294	48.46	1/888	1/7086
INDEL	Breast	ANLN_E657Afs*35	HLA-B07:02	VPRAAVNLV	0.9975	0.6099	0.0412	39.2	0.1367	48.46	1/888	1/7086
INDEL	Breast	ANLN_E657Afs*35	HLA-C03:04	AAVNLVIAL	0.9997	0.9932	0.0601	15.6	0.0637	48.46	1/888	1/7086
INDEL	Breast	ANLN_E657Afs*35	HLA-C03:04	FTALMHIDL	0.9943	0.9836	0.7881	135.2	0.4395	48.46	1/888	1/7086
INDEL	Breast	ANLN_E657Afs*35	HLA-B07:02	VPRAAVNLVI	0.9889	0.503	0.1656	26.5	0.0969	48.46	1/888	1/7086
INDEL	Breast	ANLN_E657Afs*35	HLA-C03:04	RAAVNLVIAL	0.9991	0.9939	0.9711	285.3	0.7013	48.46	1/888	1/7086
INDEL	Breast	ERV3-1_E259_H260insYCCPR	HLA-C07:02	FRVFESFYEY	0.9984	0.9216	0.7905	396.6	0.2614	107.81	1/888	1/7086
INDEL	Breast	DMTF1_Y511Pfs*17	HLA-B07:02	QPTGTPGTPL	0.996	0.5601	0.4153	36.6	0.1255	25.26	1/888	1/7086
INDEL	Breast	AKAP9_T2825_E2826insYIYLY	HLA-C03:04	ISQFTYIYL	0.9979	0.9784	0.8024	473.1	0.9721	22.11	1/888	1/7086
INDEL	Breast	AKAP9_T2825_E2826insYIYLY	HLA-A02:01	YLYEKIEKM	0.9974	0.6514	0.0005	4.4	0.0235	22.11	1/888	1/7086
INDEL	Breast	AKAP9_T2825_E2826insYIYLY	HLA-C07:02	YLYEKIEKM	0.8347	0.9602	0.0096	87.7	0.0471	22.11	1/888	1/7086
INDEL	Breast	AKAP9_T2825_E2826insYIYLY	HLA-C03:04	YLYEKIEKM	0.9941	0.9901	0.0052	82	0.3175	22.11	1/888	1/7086
INDEL	Breast	KMT2C_P2523_R2524insSTPS	HLA-C03:04	MPSTPSRPL	0.995	0.9876	0.2712	357.5	0.7991	17.19	1/888	1/7086
INDEL	Breast	CDCA2_Q530Yfs*11	HLA-C07:02	YYPIISAL	0.9888	0.852	0.1383	425.5	0.2794	14.14	1/888	1/7086
INDEL	Breast	CDCA2_Q530Yfs*11	HLA-C03:04	YIYYPIISA	0.9427	0.9845	0.5213	479.9	0.983	14.14	1/888	1/7086
INDEL	Breast	CDCA2_Q530Yfs*11	HLA-C07:02	IYYPIISAL	0.6688	0.8753	0.0187	25.9	0.0097	14.14	1/888	1/7086
INDEL	Breast	CDCA2_Q530Yfs*11	HLA-C03:04	IYYPIISAL	0.8666	0.9866	0.2025	197.8	0.5595	14.14	1/888	1/7086
INDEL	Breast	CDCA2_Q530Yfs*11	HLA-C03:04	YIYYPIISAL	0.9994	0.9839	1.073	130.2	0.4291	14.14	1/888	1/7086
INDEL	Breast	RB1CC1_E689_L690insVLFDVFLLV	HLA-A02:01	VLFDVFLLV	0.9968	0.6499	0.0717	5.6	0.0439	79.78	1/888	1/7086
INDEL	Breast	RB1CC1_E689_L690insVLFDVFLLV	HLA-A02:01	VLFDVFLLVL	0.9942	0.697	0.5144	24.3	0.3329	79.78	1/888	1/7086
INDEL	Breast	RB1CC1_E689_L690insVLFDVFLLV	HLA-A02:01	FLLVLSPDSI	0.9788	0.6512	0.5723	23.8	0.3269	79.78	1/888	1/7086
INDEL	Breast	HNF4G_S27Vfs*5	HLA-C07:02	KHYGAVLQL	0.8505	0.9714	0.0166	282.8	0.186	3.31	1/888	1/7086
INDEL	Breast	OSGIN2_K490Ifs*18	HLA-C07:02	IRMRKSICL	0.923	0.7822	0.4737	84.8	0.0449	50.59	1/888	1/7086
INDEL	Breast	MTERF3_E304Pfs*8	HLA-C07:02	YRLPTIRTW	0.8059	0.9762	0.0396	281	0.1847	97.5	1/888	1/7086
INDEL	Breast	MTERF3_E304Pfs*8	HLA-C07:02	YRLPTIRTWF	0.9941	0.9476	0.2841	113.4	0.0613	97.5	1/888	1/7086
INDEL	Breast	POP1_E162Afs*30	HLA-C07:02	LRYRRRKPY	0.6534	0.8087	1.3416	426.5	0.28	20	1/888	1/7086
INDEL	Breast	POP1_E162Afs*30	HLA-A02:01	RLQEIAQKAYL	0.9977	0.6689	0.1947	217.6	1.7356	20	1/888	1/7086
INDEL	Breast	STK3_E213Lfs*9	HLA-C03:04	WSLGITSIL	0.9996	0.9861	1.0266	25.8	0.1134	23.69	1/888	1/7086
INDEL	Breast	VPS13B_L2238Ffs*17	HLA-A02:01	SIDFFQEEV	0.9727	0.671	0.4048	109.6	1.1208	16.86	1/888	1/7086
INDEL	Breast	VPS13B_L2238Ffs*17	HLA-C07:02	YRSSGVKNI	0.7975	0.9378	0.1196	187.8	0.1202	16.86	1/888	1/7086
INDEL	Breast	NFIB_P369Lfs*41	HLA-A02:01	FLWGNTSYP	0.9048	0.7841	1.004	78.5	0.8958	99.14	1/888	1/7086
INDEL	Breast	NFIB_P369Lfs*41	HLA-C03:04	TSYPSSSPI	0.9917	0.9791	0.6191	11.1	0.0388	99.14	1/888	1/7086
INDEL	Breast	NFIB_P369Lfs*41	HLA-C03:04	YPSSSPIEL	0.9989	0.9757	0.0658	62.3	0.2546	99.14	1/888	1/7086
INDEL	Breast	NFIB_P369Lfs*41	HLA-C03:04	SSSPIELLF	0.9981	0.9903	0.0835	368.9	0.8159	99.14	1/888	1/7086
INDEL	Breast	NFIB_P369Lfs*41	HLA-A02:01	FLWGNTSYPS	0.9883	0.7436	1.5385	21.6	0.2953	99.14	1/888	1/7086
INDEL	Breast	ELAVL2_Q4Hfs*22	HLA-A02:01	CLMGQLAIT	0.9447	0.6776	1.7731	130.2	1.2542	8.69	1/888	1/7086
INDEL	Breast	ELAVL2_Q4Hfs*22	HLA-A02:01	QLAITQPMV	0.9843	0.7372	0.5195	206.6	1.6806	8.69	1/888	1/7086
INDEL	Breast	ELAVL2_Q4Hfs*22	HLA-A02:01	GQLAITQPMV	0.9771	0.6195	0.8228	163	1.4535	8.69	1/888	1/7086
INDEL	Breast	ZNF462_Y2202delinsFTN	HLA-C03:04	SGFTNIQSI	0.9534	0.9815	0.897	325.5	0.7584	13.38	1/888	1/7086
INDEL	Breast	TLR4_S86Gfs*17	HLA-A02:01	QVLDLGPGV	0.9554	0.5154	0.5419	226.5	1.7782	12.44	1/888	1/7086
INDEL	Breast	TLR4_S86Gfs*17	HLA-B07:02	GPGVKSRQL	0.9996	0.545	0.4232	172.6	0.4281	12.44	1/888	1/7086
INDEL	Breast	NEBL_T728Mfs*19	HLA-B07:02	RGQLGRATM	0.9405	0.5776	1.3695	496.1	0.8273	16.23	1/888	1/7086
INDEL	Breast	NEBL_T728Mfs*19	HLA-A02:01	CLNEYNFNL	0.9947	0.5623	0.1566	10.6	0.1251	16.23	1/888	1/7086
INDEL	Breast	NEBL_T728Mfs*19	HLA-C07:02	YRGQLGRATM	0.9969	0.9639	0.8024	438.7	0.2872	16.23	1/888	1/7086
INDEL	Breast	ANK3_S4023Ffs*47	HLA-B07:02	CPRLPGVA	0.9997	0.5986	1.7204	418.4	0.7516	9.31	1/888	1/7086
INDEL	Breast	ANK3_S4023Ffs*47	HLA-B07:02	CPRLPGVAS	0.9979	0.6548	0.1898	56.3	0.1894	9.31	1/888	1/7086
INDEL	Breast	ANK3_S4023Ffs*47	HLA-A02:01	RLQRSLLEI	0.9908	0.6224	0.5815	188.1	1.5832	9.31	1/888	1/7086
INDEL	Breast	ANK3_S4023Ffs*47	HLA-B07:02	CPRLPGVASL	0.9998	0.8134	0.1025	5.3	0.0093	9.31	1/888	1/7086
INDEL	Breast	ANK3_S4023Ffs*47	HLA-B07:02	CPRLPGVASLR	0.9995	0.6907	1.1117	326.8	0.6517	9.31	1/888	1/7086
INDEL	Breast	ANK3_F2722Lfs*59	HLA-A02:01	KLSSIRLKL	0.9887	0.5205	0.0299	192.4	1.6049	9.31	2/888	2/7086
INDEL	Breast	ANK3_F2722Lfs*59	HLA-C07:02	IRLKLTNVI	0.8618	0.7503	0.5296	433.3	0.2841	9.31	1/888	1/7086
INDEL	Breast	ANK3_F2722Lfs*59	HLA-C03:04	RASYPSTKF	0.9468	0.9942	0.4753	147.7	0.4644	9.31	1/888	1/7086
INDEL	Breast	ANK3_F2722Lfs*59	HLA-C03:04	ASYPSTKFL	0.9966	0.9948	0.0734	70	0.2813	9.31	1/888	1/7086
INDEL	Breast	ANK3_F2722Lfs*59	HLA-C07:02	SYPSTKFLL	0.562	0.962	0.0412	149.7	0.0891	9.31	1/888	1/7086
INDEL	Breast	KIF20B_L408delinsYPSITTVHHCM	HLA-A02:01	SLYPSITTV	0.998	0.7148	0.0003	8	0.0842	21.61	1/888	1/7086
INDEL	Breast	KIF20B_L408delinsYPSITTVHHCM	HLA-C03:04	SLYPSITTV	0.5633	0.995	0.0201	156.6	0.4808	21.61	1/888	1/7086
INDEL	Breast	KIF20B_L408delinsYPSITTVHHCM	HLA-C03:04	TTVHHCMTL	0.994	0.9903	0.4475	239.6	0.6316	21.61	1/888	1/7086
INDEL	Breast	KIF20B_L408delinsYPSITTVHHCM	HLA-A02:01	MTLGKCINV	0.9776	0.7448	0.3698	139.8	1.3133	21.61	1/888	1/7086
INDEL	Breast	TNKS2_N357Ifs*16	HLA-C03:04	MVISTLTSW	0.8127	0.9924	1.9404	461	0.9522	44.72	1/888	1/7086
INDEL	Breast	TNKS2_N357Ifs*16	HLA-A02:01	TLTSWLFQA	0.968	0.7585	0.0888	12.1	0.1452	44.72	1/888	1/7086
INDEL	Breast	TNKS2_N357Ifs*16	HLA-A02:01	STLTSWLFQA	0.8993	0.7855	1.6615	67.3	0.8038	44.72	1/888	1/7086
INDEL	Breast	TRIM21_I249Lfs*19	HLA-C03:04	YSTCGLAL	0.9997	0.9828	0.4718	405.8	0.8677	99.34	1/888	1/7086
INDEL	Breast	TRIM21_I249Lfs*19	HLA-A02:01	LLQEVILYS	0.9903	0.5472	1.276	144.6	1.3461	99.34	1/888	2/7086
INDEL	Breast	TRIM21_I249Lfs*19	HLA-A02:01	LLQEVILYST	0.9845	0.5969	1.6929	124.6	1.2193	99.34	1/888	2/7086
INDEL	Breast	QSER1_P98Qfs*29	HLA-C03:04	LSHHDQLVL	0.9995	0.9657	0.2396	65.1	0.2648	18.11	1/888	1/7086
INDEL	Breast	QSER1_P98Qfs*29	HLA-A02:01	RLPRELFQL	0.9729	0.7565	0.0888	44.3	0.5687	18.11	1/888	1/7086
INDEL	Breast	QSER1_P98Qfs*29	HLA-A02:01	ELFQLLWHL	0.8534	0.7796	0.2071	47.3	0.6002	18.11	1/888	1/7086
INDEL	Breast	QSER1_P98Qfs*29	HLA-A02:01	LLWHLSAWA	0.9726	0.704	0.4232	28.9	0.3891	18.11	1/888	1/7086
INDEL	Breast	QSER1_P98Qfs*29	HLA-A03:01	HLSAWAVLY	0.9586	0.6738	1.0474	85.1	0.319	18.11	1/888	1/7086
INDEL	Breast	QSER1_P98Qfs*29	HLA-A02:01	RLPRELFQLL	0.8688	0.726	0.8294	250.9	1.9042	18.11	1/888	1/7086
INDEL	Breast	QSER1_P98Qfs*29	HLA-B40:01	RELFQLLWHL	0.9419	0.5271	1.1706	51.3	0.1447	18.11	1/888	1/7086
INDEL	Breast	QSER1_P98Qfs*29	HLA-A02:01	LLWHLSAWAV	0.9926	0.8366	0.3529	9.2	0.1064	18.11	1/888	1/7086
INDEL	Breast	QSER1_L99Afs*26	HLA-A02:01	RLPRELFQL	0.9729	0.7565	0.0888	44.3	0.5687	18.11	1/888	1/7086
INDEL	Breast	QSER1_L99Afs*26	HLA-A02:01	ELFQLLWHL	0.8534	0.7796	0.2071	47.3	0.6002	18.11	1/888	1/7086
INDEL	Breast	QSER1_L99Afs*26	HLA-A02:01	LLWHLSAWA	0.9726	0.704	0.4232	28.9	0.3891	18.11	1/888	1/7086
INDEL	Breast	QSER1_L99Afs*26	HLA-A03:01	HLSAWAVLY	0.9586	0.6738	1.0474	85.1	0.319	18.11	1/888	1/7086
INDEL	Breast	QSER1_L99Afs*26	HLA-A02:01	RLPRELFQLL	0.8688	0.726	0.8294	250.9	1.9042	18.11	1/888	1/7086
INDEL	Breast	QSER1_L99Afs*26	HLA-B40:01	RELFQLLWHL	0.9419	0.5271	1.1706	51.3	0.1447	18.11	1/888	1/7086
INDEL	Breast	QSER1_L99Afs*26	HLA-A02:01	LLWHLSAWAV	0.9926	0.8366	0.3529	9.2	0.1064	18.11	1/888	1/7086
INDEL	Breast	QSER1_A470Tfs*7	HLA-B40:01	GESLTLTTL	0.9979	0.5342	0.1112	8.4	0.009	18.11	1/888	1/7086
INDEL	Breast	HIPK3_T738_L739insIINIKVH	HLA-A02:01	HLSAPQPVSV	0.9903	0.5865	0.585	245.2	1.8752	38.02	1/888	1/7086
INDEL	Breast	PANX1_S357delinsRYTFNN	HLA-C03:04	YTFNNGQGI	0.9411	0.9826	0.8538	19.2	0.082	36.32	1/888	1/7086
INDEL	Breast	ARID2_C1319Vfs*6	HLA-C03:04	IQSETNQVL	0.9744	0.985	0.4397	326.6	0.7599	6.08	1/888	1/7086
INDEL	Breast	NCKAP1L_R716_L717insSS	HLA-A02:01	SLNRAIVWL	0.9401	0.8185	0.1112	49.3	0.6226	16.77	1/888	1/7086
INDEL	Breast	NCKAP1L_R716_L717insSS	HLA-A02:01	SLNRAIVWLA	0.9546	0.7825	1.6372	152.2	1.3952	16.77	1/888	1/7086
INDEL	Breast	EEA1_I1212_E1213insINQNESMLTDIKEEEELKKEFI	HLA-C03:04	FIINQNESM	0.9994	0.9918	0.1285	32.2	0.1468	6.97	1/888	1/7086
INDEL	Breast	EEA1_I1212_E1213insINQNESMLTDIKEEEELKKEFI	HLA-C03:04	IINQNESML	0.997	0.9891	1.388	480.8	0.9845	6.97	1/888	1/7086
INDEL	Breast	PCCA_L51Pfs*55	HLA-A02:01	LMVSRNPSL	0.9664	0.5075	0.3866	148.1	1.3687	4.4	1/888	1/7086
INDEL	Breast	PCCA_L51Pfs*55	HLA-C03:04	LMVSRNPSL	0.9971	0.9852	0.8833	101.2	0.3659	4.4	1/888	1/7086
INDEL	Breast	PCCA_L51Pfs*55	HLA-A02:01	LLIEEKLHV	0.9986	0.5622	0.0686	16.7	0.212	4.4	1/888	1/7086
INDEL	Breast	PCCA_L51Pfs*55	HLA-A02:01	KLHVGLLEL	0.9885	0.8038	0.1688	81.2	0.9181	4.4	1/888	1/7086
INDEL	Breast	PCCA_L51Pfs*55	HLA-B40:01	LELARRWAL	0.9895	0.8618	0.2268	34.6	0.1002	4.4	1/888	1/7086
INDEL	Breast	PCCA_L51Pfs*55	HLA-C07:02	ARRWALRQL	0.7797	0.958	0.5471	363.7	0.2405	4.4	1/888	1/7086
INDEL	Breast	PCCA_L51Pfs*55	HLA-C07:02	LRQLPSTVM	0.8637	0.9747	0.5435	234	0.1538	4.4	1/888	1/7086
INDEL	Breast	PCCA_L51Pfs*55	HLA-A02:01	GLLELARRWAL	0.982	0.7549	1.5116	31.6	0.4226	4.4	1/888	1/7086
INDEL	Breast	TRAV8-1_L67Ffs*14	HLA-A02:01	LLFGNSQVL	0.9699	0.6219	0.3461	81.2	0.9178	2.29	1/888	1/7086
INDEL	Breast	TRAV8-1_L67Ffs*14	HLA-C03:04	LLFGNSQVL	0.9819	0.9889	0.4246	23.6	0.1032	2.29	1/888	1/7086
INDEL	Breast	TRAV38-1_R63_Q64insV	HLA-C07:02	SRVQMILVI	0.9712	0.8794	0.0187	354.1	0.2345	1.45	1/888	1/7086
INDEL	Breast	SLC7A7_Y457Sfs*63	HLA-A02:01	FTSEGSWGL	0.9312	0.6376	0.2367	13.1	0.1592	26.71	1/888	1/7086
INDEL	Breast	SLC7A7_Y457Sfs*63	HLA-C03:04	FTSEGSWGL	0.992	0.9882	0.7226	88.5	0.3352	26.71	1/888	1/7086
INDEL	Breast	SLC7A7_Y457Sfs*63	HLA-B07:02	LPQGTSRSC	0.9338	0.5409	0.8677	329.2	0.6547	26.71	1/888	1/7086
INDEL	Breast	SLC7A7_Y457Sfs*63	HLA-C07:02	SRSCVCQLL	0.8008	0.896	0.4529	325.1	0.2152	26.71	1/888	1/7086
INDEL	Breast	SLC7A7_Y457Sfs*63	HLA-A02:01	LLQKWIWKM	0.9683	0.5745	0.1718	67.3	0.804	26.71	1/888	1/7086
INDEL	Breast	SGPP1_Y266Ifs*17	HLA-C07:02	YHFNLSCLL	0.6321	0.8423	0.6854	74.8	0.0378	8.19	1/888	1/7086
INDEL	Breast	SYNE2_K2710Efs*19	HLA-C03:04	MGNIGAITL	0.9993	0.988	0.388	39.9	0.1785	15.29	1/888	1/7086
INDEL	Breast	TMED10_A80_G81insLQMMNLH	HLA-C07:02	MMNLHGHIL	0.7417	0.9623	0.8422	456.5	0.2974	169.32	1/888	1/7086
INDEL	Breast	TMED10_A80_G81insLQMMNLH	HLA-C03:04	MMNLHGHIL	0.9893	0.982	0.6875	91.3	0.3422	169.32	1/888	1/7086
INDEL	Breast	PAPOLA_L222Ffs*52	HLA-C07:02	IRFPRWCFL	0.9292	0.9786	0.2573	18.9	0.0088	57.26	1/888	1/7086
INDEL	Breast	PAPOLA_L222Ffs*52	HLA-C03:04	LGYASSKNL	0.9953	0.9893	1.9269	296.5	0.7179	57.26	1/888	1/7086
INDEL	Breast	PAPOLA_L222Ffs*52	HLA-C03:04	YASSKNLPA	0.9844	0.9947	1.0576	85.7	0.3278	57.26	1/888	1/7086
INDEL	Breast	PAPOLA_L222Ffs*52	HLA-C03:04	ASSKNLPAL	0.9996	0.9938	0.2856	81.6	0.3165	57.26	1/888	1/7086
INDEL	Breast	PAPOLA_L222Ffs*52	HLA-C07:02	FRFTVNSESY	0.9906	0.8016	0.1581	461	0.3	57.26	1/888	1/7086
INDEL	Breast	PAPOLA_L222Ffs*52	HLA-C03:04	YASSKNLPAL	0.9996	0.9936	0.4001	32.3	0.1474	57.26	1/888	1/7086
INDEL	Breast	PPIP5K1_P1244Wfs*114	HLA-B07:02	SASHVRRSL	0.9908	0.7102	0.4409	54.6	0.1855	16.67	2/888	2/7086
INDEL	Breast	PPIP5K1_P1244Wfs*114	HLA-C03:04	SASHVRRSL	0.9994	0.9944	0.3461	155.6	0.479	16.67	2/888	2/7086
INDEL	Breast	PPIP5K1_P1244Wfs*114	HLA-C03:04	TSASHARTF	0.9886	0.9789	0.8317	251.3	0.6506	16.67	1/888	1/7086
INDEL	Breast	PPIP5K1_P1244Wfs*114	HLA-C03:04	SASHARTFL	0.9991	0.9784	0.2978	84.2	0.3238	16.67	1/888	1/7086
INDEL	Breast	PPIP5K1_P1244Wfs*114	HLA-B07:02	SASHVRRSL	0.9908	0.7102	0.4409	54.6	0.1855	16.67	2/888	2/7086
INDEL	Breast	PPIP5K1_P1244Wfs*114	HLA-C03:04	SASHVRRSL	0.9994	0.9944	0.3461	155.6	0.479	16.67	2/888	2/7086
INDEL	Breast	PPIP5K1_P1244Wfs*114	HLA-C03:04	SASNARRTM	0.9973	0.9884	0.6352	91.4	0.3425	16.67	1/888	1/7086
INDEL	Breast	PPIP5K1_P1244Wfs*114	HLA-A02:01	SLRKFASYV	0.8423	0.6167	0.4018	249.3	1.8965	16.67	1/888	1/7086
INDEL	Breast	PPIP5K1_P1244Wfs*114	HLA-B07:02	SASHARGSL	0.9916	0.736	0.68	44.3	0.1562	16.67	1/888	1/7086
INDEL	Breast	PPIP5K1_P1244Wfs*114	HLA-C03:04	SASHARGSL	0.998	0.9935	0.5757	131.5	0.4317	16.67	1/888	1/7086
INDEL	Breast	PPIP5K1_P1244Wfs*114	HLA-C03:04	LASWSISSM	0.9995	0.9902	0.3974	7.4	0.0274	16.67	1/888	1/7086
INDEL	Breast	PPIP5K1_P1244Wfs*114	HLA-A02:01	SLWRLASWSI	0.9667	0.628	0.9687	27	0.3674	16.67	1/888	1/7086
INDEL	Breast	CEP152_I1035Kfs*17	HLA-C03:04	ISNWKSISM	0.9993	0.987	0.1369	81.6	0.3166	7.05	1/888	1/7086
INDEL	Breast	IGF1R_F1047delinsLYS	HLA-C03:04	ASMRERIEL	0.9995	0.9884	0.6556	388.7	0.8443	1.36	1/888	1/7086
INDEL	Breast	IGF1R_F1047delinsLYS	HLA-C03:04	YSLNEASVM	0.9997	0.996	0.4382	7.8	0.029	1.36	1/888	1/7086
INDEL	Breast	XPO6_C417delinsLSNKYFS	HLA-A02:01	SLSNKYFSL	0.9781	0.6628	0.0177	30.9	0.413	43.93	1/888	1/7086
INDEL	Breast	XPO6_C417delinsLSNKYFS	HLA-C03:04	FSLDIWTLF	0.9952	0.9854	0.7494	73.6	0.2929	43.93	1/888	1/7086
INDEL	Breast	XPO6_C417delinsLSNKYFS	HLA-C03:04	FSLSNKYFSL	0.9997	0.9894	1.5067	329	0.7631	43.93	1/888	1/7086
INDEL	Breast	XPO6_C417delinsLSNKYFS	HLA-C03:04	FSLDIWTLFL	0.9973	0.9815	1.7953	394.9	0.8529	43.93	1/888	1/7086
INDEL	Breast	IGHV3OR16-8_Y69Sfs*15	HLA-C03:04	KGLEWVSSL	0.9988	0.9958	0.296	462	0.9539	19.75	1/888	1/7086
INDEL	Breast	IGHV3OR16-8_Y69Sfs*15	HLA-A02:01	GLEWVSSLV	0.9726	0.7676	0.9173	198.5	1.6384	19.75	1/888	1/7086
INDEL	Breast	IGHV3OR16-8_Y69Sfs*15	HLA-B40:01	LEWVSSLVV	0.9199	0.6281	0.766	49	0.1389	19.75	1/888	1/7086
INDEL	Breast	IGHV3OR16-8_Y69Sfs*15	HLA-A02:01	WVSSLVVIV	0.9584	0.622	0.9275	238.4	1.8395	19.75	1/888	1/7086
INDEL	Breast	IGHV3OR16-8_Y69Sfs*15	HLA-C03:04	VVTQTTQTL	0.9904	0.9681	0.3577	48.4	0.2047	19.75	1/888	1/7086
INDEL	Breast	CNOT1_N1738Rfs*9	HLA-C07:02	IRNHLVRRL	0.8443	0.8582	0.0697	146.9	0.0854	87.36	1/888	1/7086
INDEL	Breast	CNOT1_N1074delinsMH	HLA-C03:04	TTMHIDTLL	0.9961	0.9793	0.9663	192.6	0.5498	87.36	1/888	1/7086
INDEL	Breast	CNOT1_N1074delinsMH	HLA-A02:01	TMHIDTLLV	0.9609	0.507	0.2604	135.1	1.2839	87.36	1/888	1/7086
INDEL	Breast	NF1_F120Pfs*46	HLA-C03:04	VVKETSMQL	0.9945	0.9933	0.3217	406.3	0.8683	12.1	1/888	1/7086
INDEL	Breast	NF1_F120Pfs*46	HLA-A02:01	ILPLGFYFL	0.9659	0.7839	0.0643	20.6	0.2814	12.1	1/888	1/7086
INDEL	Breast	NF1_F120Pfs*46	HLA-A02:01	FLSAATTSM	0.9677	0.6177	0.1872	14.6	0.1795	12.1	1/888	1/7086
INDEL	Breast	NF1_F120Pfs*46	HLA-C03:04	FLSAATTSM	0.9881	0.9926	0.4196	7.6	0.0281	12.1	1/888	1/7086
INDEL	Breast	NF1_F120Pfs*46	HLA-C03:04	AATTSMQSL	0.9994	0.9832	0.3089	54.1	0.2262	12.1	1/888	1/7086
INDEL	Breast	NF1_F120Pfs*46	HLA-C03:04	TSMQSLVAF	0.9969	0.9763	0.8378	30	0.1344	12.1	1/888	1/7086
INDEL	Breast	NF1_F120Pfs*46	HLA-A02:01	GILPLGFYFL	0.9766	0.8268	0.5534	83.5	0.9377	12.1	1/888	1/7086
INDEL	Breast	NF1_F120Pfs*46	HLA-C03:04	SAATTSMQSL	0.9991	0.9684	0.68	426.5	0.8947	12.1	1/888	1/7086
INDEL	Breast	EVI2B_H164Qfs*5	HLA-C07:02	SRKQITVQL	0.8771	0.8941	0.0904	155.4	0.0939	44.28	1/888	1/7086
INDEL	Breast	VMP1_M193Tfs*62	HLA-C07:02	LHISWPEQL	0.6937	0.97	0.1609	495.8	0.3263	71.96	1/888	1/7086
INDEL	Breast	VMP1_M193Tfs*62	HLA-C03:04	LASQVLNQM	0.9996	0.9945	0.2778	35.7	0.1627	71.96	1/888	1/7086
INDEL	Breast	TUBD1_W86Sfs*35	HLA-A02:01	NMVNMHASV	0.9722	0.5358	0.4825	159.5	1.4352	12.24	1/888	1/7086
INDEL	Breast	TUBD1_W86Sfs*35	HLA-C03:04	HASVKNKVL	0.9976	0.9911	0.5181	355.1	0.7962	12.24	1/888	1/7086
INDEL	Breast	TUBD1_W86Sfs*35	HLA-C03:04	KVLETTGHM	0.9371	0.997	1.1589	291.9	0.7112	12.24	1/888	1/7086
INDEL	Breast	TUBD1_W86Sfs*35	HLA-A02:01	FMDPGMKNL	0.9894	0.5487	0.024	16	0.198	12.24	1/888	1/7086
INDEL	Breast	TUBD1_W86Sfs*35	HLA-C03:04	FMDPGMKNL	0.9979	0.9908	0.0396	91.4	0.3426	12.24	1/888	1/7086
INDEL	Breast	BRIP1_S1004Efs*14	HLA-C07:02	SWSEFHSTL	0.6248	0.9601	0.3168	242.6	0.1595	6.59	1/888	1/7086
INDEL	Breast	BRIP1_S1004Efs*14	HLA-A02:01	TLYLCNPQL	0.9613	0.5527	0.348	54.4	0.6752	6.59	1/888	1/7086
INDEL	Breast	MED13_E158Nfs*34	HLA-A02:01	MLSKRTLVL	0.9241	0.5549	0.2268	194.3	1.6156	30.25	1/888	1/7086
INDEL	Breast	MED13_E158Nfs*34	HLA-C03:04	MLSKRTLVL	0.8763	0.9868	0.3753	130.2	0.4289	30.25	1/888	1/7086
INDEL	Breast	MED13_E158Nfs*34	HLA-A02:01	FLAWRQQCL	0.97	0.7357	0.5245	46.9	0.5955	30.25	1/888	1/7086
INDEL	Breast	MED13_E158Nfs*34	HLA-C03:04	FLAWRQQCL	0.9407	0.9896	1.4943	436.3	0.9099	30.25	1/888	1/7086
INDEL	Breast	MED13_E158Nfs*34	HLA-A02:01	IMLSKRTLVL	0.9367	0.5513	1.975	271.5	1.9965	30.25	1/888	1/7086
INDEL	Breast	MED13_E158Nfs*34	HLA-A02:01	MLSKRTLVLL	0.9231	0.5494	0.9595	63	0.7629	30.25	1/888	1/7086
INDEL	Breast	BPTF_K1492_L1493insKSFPFVLL	HLA-A02:01	KSFPFVLLL	0.9098	0.6943	0.0344	144.2	1.3437	22.24	1/888	1/7086
INDEL	Breast	BPTF_K1492_L1493insKSFPFVLL	HLA-C07:02	KSFPFVLLL	0.9892	0.9825	0.0166	256.5	0.1684	22.24	1/888	1/7086
INDEL	Breast	BPTF_K1492_L1493insKSFPFVLL	HLA-C03:04	KSFPFVLLL	0.9837	0.9953	0.0062	59.5	0.2448	22.24	1/888	1/7086
INDEL	Breast	BPTF_K1492_L1493insKSFPFVLL	HLA-A02:01	VLLLEERPV	0.925	0.5221	1.5343	269.9	1.9894	22.24	1/888	1/7086
INDEL	Breast	CLUL1_K234Ffs*18	HLA-C07:02	YFFPAFSF	0.9951	0.9369	0.1317	412.6	0.2715	5.48	1/888	1/7086
INDEL	Breast	CLUL1_K234Ffs*18	HLA-C07:02	YFFPAFSFF	0.7398	0.9554	0.0539	26.3	0.0098	5.48	1/888	1/7086
INDEL	Breast	CLUL1_K234Ffs*18	HLA-C03:04	YFFPAFSFF	0.7539	0.9928	0.3925	372.4	0.8211	5.48	1/888	1/7086
INDEL	Breast	CLUL1_K234Ffs*18	HLA-C07:02	FFPAFSFFF	0.6	0.9778	0.3254	296.4	0.1951	5.48	1/888	1/7086
INDEL	Breast	CLUL1_K234Ffs*18	HLA-C07:02	FSFFFSLSL	0.9164	0.9423	1.7038	403.4	0.2657	5.48	1/888	1/7086
INDEL	Breast	CLUL1_K234Ffs*18	HLA-C03:04	FSFFFSLSL	0.9988	0.991	0.3987	6.9	0.026	5.48	1/888	1/7086
INDEL	Breast	CLUL1_K234Ffs*18	HLA-C07:02	FFFSLSLTF	0.6745	0.9193	0.557	159.7	0.0972	5.48	1/888	1/7086
INDEL	Breast	CLUL1_K234Ffs*18	HLA-C03:04	FFFSLSLTF	0.687	0.9899	1.6082	410.9	0.8744	5.48	1/888	1/7086
INDEL	Breast	CLUL1_K234Ffs*18	HLA-A02:01	SLSLTFFQL	0.9528	0.6793	0.1498	48.4	0.6124	5.48	1/888	1/7086
INDEL	Breast	CLUL1_K234Ffs*18	HLA-A02:01	SLTFFQLSL	0.9117	0.7788	0.5671	49.5	0.6247	5.48	1/888	1/7086
INDEL	Breast	CLUL1_K234Ffs*18	HLA-C07:02	YFFPAFSFFF	0.9673	0.969	0.6929	227.4	0.1493	5.48	1/888	1/7086
INDEL	Breast	CEP192_F1871Sfs*30	HLA-C03:04	QAILFWKAL	0.9981	0.9928	0.7473	337.8	0.7744	18.77	1/888	1/7086
INDEL	Breast	CEP192_F1871Sfs*30	HLA-C03:04	KALKNYLTV	0.8786	0.982	0.5296	117.1	0.3995	18.77	1/888	1/7086
INDEL	Breast	TRAPPC8_N939Lfs*14	HLA-C03:04	KAYVEFVLF	0.9041	0.9949	0.267	315.6	0.745	29.14	1/888	1/7086
INDEL	Breast	TRAPPC8_N939Lfs*14	HLA-A02:01	FVLFETMSA	0.9567	0.5197	0.9129	125.1	1.2225	29.14	1/888	1/7086
INDEL	Breast	TRAPPC8_N939Lfs*14	HLA-A02:01	TMSANVHLL	0.9801	0.5121	0.0356	52.5	0.6561	29.14	1/888	1/7086
INDEL	Breast	TRAPPC8_N939Lfs*14	HLA-C03:04	TMSANVHLL	0.9929	0.9902	0.4808	496.9	1.0069	29.14	1/888	1/7086
INDEL	Breast	TRAPPC8_N939Lfs*14	HLA-A02:01	VLFETMSANV	0.998	0.5835	0.6018	20.3	0.2772	29.14	1/888	1/7086
INDEL	Breast	ZNF24_P334Efs*19	HLA-A02:01	YLLREKETL	0.8985	0.7851	0.1609	65.4	0.7866	48.85	1/888	1/7086
INDEL	Breast	ALPK2_L1742Rfs*53	HLA-C07:02	LRLKRNVTL	0.9735	0.9546	0.1688	81.1	0.0419	1.52	1/888	1/7086
INDEL	Breast	ALPK2_V710Efs*32	HLA-C03:04	LAQHSEESM	0.9994	0.976	0.6692	201.6	0.5664	1.52	1/888	1/7086
INDEL	Breast	ALPK2_V710Efs*32	HLA-A02:01	SMVSNPVPV	0.9922	0.5159	0.2122	15.9	0.1968	1.52	1/888	1/7086
INDEL	Breast	ALPK2_V710Efs*32	HLA-C03:04	MVSNPVPVV	0.9659	0.9864	0.4718	136.6	0.4425	1.52	1/888	1/7086
INDEL	Breast	ZNF257_C175Lfs*19	HLA-A02:01	KLLHLLVKNV	0.9858	0.5776	0.7286	13.2	0.1605	3.95	1/888	1/7086
INDEL	Breast	ZNF546_T408Mfs*84	HLA-A02:01	SLVKNPTNV	0.9475	0.6923	0.2367	172.5	1.501	2.45	1/888	1/7086
INDEL	Breast	ZNF546_T408Mfs*84	HLA-A02:01	FMQNLLDIV	0.9974	0.5774	0.1775	9.2	0.1065	2.45	1/888	1/7086
INDEL	Breast	ZNF546_T408Mfs*84	HLA-A02:01	NLLDIVEFI	0.9934	0.531	0.0109	6.3	0.0534	2.45	1/888	1/7086
INDEL	Breast	ZNF546_T408Mfs*84	HLA-A02:01	LLDIVEFIL	0.9843	0.5463	0.5512	31.6	0.4229	2.45	1/888	1/7086
INDEL	Breast	ZNF546_T408Mfs*84	HLA-A02:01	ILVRNPMNV	0.9616	0.6758	0.3851	70.4	0.8312	2.45	2/888	2/7086
INDEL	Breast	ZNF546_T408Mfs*84	HLA-A02:01	NLLGIIELI	0.9868	0.5643	0.1514	30.5	0.4078	2.45	1/888	1/7086
INDEL	Breast	ZNF546_T408Mfs*84	HLA-A02:01	ILVRNPMNV	0.9616	0.6758	0.3851	70.4	0.8312	2.45	2/888	2/7086
INDEL	Breast	ZNF546_T408Mfs*84	HLA-C07:02	VRNVGRPLF	0.8153	0.8401	0.1872	120.2	0.0649	2.45	1/888	1/7086
INDEL	Breast	ZNF546_T408Mfs*84	HLA-C03:04	FVVINLLYI	0.6944	0.9805	1.2627	300.3	0.7234	2.45	1/888	1/7086
INDEL	Breast	ZNF546_T408Mfs*84	HLA-A02:01	NLLDIVEFIL	0.9905	0.5228	0.5962	26.6	0.363	2.45	1/888	1/7086
INDEL	Breast	ZNF546_T408Mfs*84	HLA-A02:01	LLDIVEFILV	0.9965	0.5607	0.7767	62.2	0.7546	2.45	1/888	1/7086
INDEL	Breast	ZNF546_T408Mfs*84	HLA-A02:01	FILVRNPMNV	0.9826	0.7123	1.1117	63.2	0.7653	2.45	1/888	1/7086
INDEL	Breast	ZNF546_T408Mfs*84	HLA-A02:01	NLLDIVEFILV	0.9973	0.5555	0.4061	46.2	0.5889	2.45	1/888	1/7086
INDEL	Breast	ZNF468_H80Kfs*40	HLA-C03:04	ITLENFVSM	0.9994	0.9921	0.458	14.9	0.0606	14.56	1/888	1/7086
INDEL	Breast	PEG3_C507Ffs*80	HLA-A02:01	FSLYHTFSV	0.9858	0.5371	0.1898	14.5	0.1773	73.66	1/888	1/7086
INDEL	Breast	PEG3_C507Ffs*80	HLA-C03:04	FSLYHTFSV	0.8984	0.9928	0.8361	21.7	0.0935	73.66	1/888	1/7086
INDEL	Breast	PEG3_C507Ffs*80	HLA-B07:02	RPSIRVPPW	0.9823	0.5592	0.3837	195.5	0.465	73.66	1/888	1/7086
INDEL	Breast	PEG3_C507Ffs*80	HLA-C07:02	IRVPPWLNI	0.9441	0.8957	0.4789	377.6	0.249	73.66	1/888	1/7086
INDEL	Breast	PEG3_C507Ffs*80	HLA-A02:01	MLEVILWNV	0.9914	0.5057	0.2138	19.6	0.2661	73.66	1/888	1/7086
INDEL	Breast	PEG3_C507Ffs*80	HLA-C07:02	VRKPSFIVL	0.9239	0.9535	0.0822	107.1	0.0582	73.66	1/888	1/7086
INDEL	Breast	PEG3_C507Ffs*80	HLA-B07:02	RPSIRVPPWL	0.9903	0.5621	0.5165	14.6	0.0459	73.66	1/888	1/7086
INDEL	Breast	PEG3_C507Ffs*80	HLA-A02:01	FMLEVILWNV	0.9984	0.5286	0.1915	2.8	0.0085	73.66	1/888	1/7086
INDEL	Breast	PEG3_C507Ffs*80	HLA-A02:01	ILWNVRIRNV	0.9827	0.7935	0.6273	46.5	0.5921	73.66	1/888	1/7086
INDEL	Breast	PEG3_C507Ffs*80	HLA-B07:02	KPSCLAPPLV	0.9133	0.5292	0.9059	398.2	0.7311	73.66	1/888	1/7086
INDEL	Breast	HCK_N496Vfs*20	HLA-A02:01	NIMMRCWKV	0.9158	0.7556	0.9642	141.1	1.3226	30.05	1/888	1/7086
INDEL	Breast	C21orf91_E254Vfs*24	HLA-C03:04	LTHQVQVIL	0.9932	0.9795	0.3352	203.3	0.5694	37.27	1/888	2/7086
INDEL	Breast	C21orf91_E254Vfs*24	HLA-B07:02	KILWPHSSM	0.8417	0.5085	1.4107	175.8	0.4335	37.27	1/888	1/7086
INDEL	Breast	C21orf91_E254Vfs*24	HLA-C03:04	KILWPHSSM	0.9558	0.9945	0.463	273.1	0.6838	37.27	1/888	2/7086
INDEL	Breast	C21orf91_E254Vfs*24	HLA-C03:04	SATLPSNSF	0.9872	0.9908	0.1465	109.3	0.3836	37.27	1/888	2/7086
INDEL	Breast	C21orf91_E254Vfs*24	HLA-A02:01	ILWPHSSMSA	0.9408	0.7136	0.2319	45.7	0.5839	37.27	2/888	2/7086
INDEL	Breast	C1orf168_F16delinsLS	HLA-C07:02	LRAKLSQNL	0.8803	0.9652	0.5213	337.9	0.224	1.01	1/888	1/7086
INDEL	Breast	DEPDC1_R520Sfs*10	HLA-A02:01	LLLRSSTSI	0.8995	0.5058	0.7267	132.1	1.2662	58.88	1/888	1/7086
INDEL	Breast	DEPDC1_R520Sfs*10	HLA-B15:01	LLRSSTSIY	0.9997	0.8266	0.2446	8.2	0.0104	58.88	1/888	1/7086
INDEL	Breast	DEPDC1_R520Sfs*10	HLA-B15:01	RSSTSIYSY	0.9939	0.8835	0.1596	114.3	0.586	58.88	1/888	1/7086
INDEL	Breast	DEPDC1_R520Sfs*10	HLA-B15:01	LLLRSSTSIY	0.9995	0.788	0.7967	16.5	0.051	58.88	1/888	1/7086
INDEL	Breast	DEPDC1_R520Sfs*10	HLA-B15:01	SLLLRSSTSIY	0.9985	0.8413	1.7953	130.7	0.6581	58.88	1/888	1/7086
INDEL	Breast	DEPDC1_R520Sfs*10	HLA-B15:01	LLRSSTSIYSY	0.9996	0.8195	0.7267	46.3	0.2304	58.88	1/888	1/7086
INDEL	Breast	ASPM_E1132Cfs*32	HLA-A02:01	FLRRPCVML	0.8295	0.7672	1.584	243.5	1.8664	77.03	1/888	1/7086
INDEL	Breast	ASPM_E1132Cfs*32	HLA-C03:03	CVMLPDPPL	0.9928	0.995	0.9315	107.7	0.3802	77.03	1/888	1/7086
INDEL	Breast	ASPM_E1132Cfs*32	HLA-B07:02	LPDPPLPSL	0.9984	0.544	0.0558	136.2	0.3673	77.03	1/888	2/7086
INDEL	Breast	ASPM_E1132Cfs*32	HLA-A02:01	MLPDPPLPSL	0.9897	0.7934	0.0282	42.8	0.5523	77.03	1/888	1/7086
INDEL	Breast	ASPM_E1132Cfs*32	HLA-B07:02	MLPDPPLPSL	0.7864	0.5391	0.1242	362	0.6919	77.03	1/888	2/7086
INDEL	Breast	ASPM_E1132Cfs*32	HLA-A02:01	VMLPDPPLPSL	0.9975	0.7806	0.0601	240.9	1.8529	77.03	1/888	1/7086
INDEL	Breast	HEATR1_E542Rfs*11	HLA-C07:02	FRFSKNTSV	0.8583	0.8633	0.0734	29.8	0.0107	47.7	1/888	1/7086
INDEL	Breast	ALMS1_A142Yfs*10	HLA-B15:01	NVVCLETTY	0.9528	0.8431	0.5619	467.7	1.6242	18.91	1/888	1/7086
INDEL	Breast	ALMS1_A142Yfs*10	HLA-B15:01	VVCLETTYF	0.844	0.9363	1.1117	418	1.5252	18.91	1/888	1/7086
INDEL	Breast	ALMS1_A142Yfs*10	HLA-B15:01	TTYFCSAGF	0.9164	0.8882	1.4821	115.9	0.5923	18.91	1/888	1/7086
INDEL	Breast	CLASP1_D360delinsVN	HLA-A02:01	LLAGAAEYV	0.9965	0.6219	0.1132	7.6	0.0763	42.4	1/888	1/7086
INDEL	Breast	CLASP1_D360delinsVN	HLA-B15:01	GAAEYVNNF	0.9947	0.9101	0.879	480.6	1.6535	42.4	1/888	1/7086
INDEL	Breast	CLASP1_D360delinsVN	HLA-A02:01	YVNNFFQHL	0.9944	0.6705	0.0121	151	1.3878	42.4	1/888	1/7086
INDEL	Breast	CLASP1_D360delinsVN	HLA-B15:01	YVNNFFQHL	0.883	0.957	0.3445	484	1.6612	42.4	1/888	1/7086
INDEL	Breast	CLASP1_D360delinsVN	HLA-C07:02	YVNNFFQHL	0.9596	0.9395	0.1609	149.9	0.0894	42.4	1/888	1/7086
INDEL	Breast	CLASP1_D360delinsVN	HLA-C03:03	YVNNFFQHL	0.9997	0.9918	0.0214	37.1	0.1685	42.4	1/888	1/7086
INDEL	Breast	CLASP1_D360delinsVN	HLA-A02:01	SLLLAGAAEYV	0.9908	0.6096	1.516	70.8	0.8339	42.4	1/888	1/7086
INDEL	Breast	LRP2_G2246Ffs*19	HLA-C03:03	ATFIGLMIL	0.9951	0.9904	0.4475	490.9	1.0004	3.64	1/888	1/7086
INDEL	Breast	LRP2_G2246Ffs*19	HLA-B15:01	AVDRSDFHIY	0.9735	0.8058	0.5058	196.6	0.9011	3.64	1/888	1/7086
INDEL	Breast	TOP2B_K1546Pfs*70	HLA-C07:02	ARNRRRHLL	0.8479	0.9473	0.8004	270.4	0.1772	465.65	1/888	1/7086
INDEL	Breast	TOP2B_K1546Pfs*70	HLA-C03:03	WTSSPQTSL	0.9986	0.976	0.5924	50.3	0.2122	465.65	1/888	1/7086
INDEL	Breast	TOP2B_K1546Pfs*70	HLA-C03:03	TSSPQTSLL	0.9994	0.9728	0.4675	245	0.6405	465.65	1/888	1/7086
INDEL	Breast	TOP2B_K1546Pfs*70	HLA-A02:01	LLCHEPVGL	0.9825	0.8775	0.3577	173.7	1.5075	465.65	1/888	1/7086
INDEL	Breast	TOP2B_K1546Pfs*70	HLA-A02:01	HLLCHEPVGL	0.9883	0.8666	0.6635	172.3	1.5003	465.65	1/888	1/7086
INDEL	Breast	POLQ_S1231Lfs*10	HLA-C07:02	LRSKCYYQL	0.8859	0.9066	0.5706	354.8	0.2349	8.89	1/888	1/7086
INDEL	Breast	ATP13A3_Y1115Lfs*21	HLA-C03:03	FVFSVIFLL	0.9617	0.9908	0.7683	315.5	0.7448	151.31	1/888	1/7086
INDEL	Breast	ATP13A3_Y1115Lfs*21	HLA-B15:01	IQLPLLTRF	0.9995	0.8698	0.0875	63.1	0.3379	151.31	1/888	1/7086
INDEL	Breast	ATP13A3_Y1115Lfs*21	HLA-B15:01	IQLPLLTRFF	0.9989	0.7717	1.8072	66	0.3545	151.31	1/888	1/7086
INDEL	Breast	SENP6_K889_S890insYVI	HLA-B15:01	SQKVADRTKY	0.9997	0.7106	0.0778	36.7	0.1805	29.59	1/888	1/7086
INDEL	Breast	KCND2_Q477Pfs*101	HLA-C07:02	WKKPRITSL	0.877	0.9053	0.2268	491.7	0.3233	3.12	1/888	1/7086
INDEL	Breast	KCND2_Q477Pfs*101	HLA-C03:03	TSLWTNKSL	0.9974	0.9882	0.6038	348.7	0.7883	3.12	1/888	1/7086
INDEL	Breast	KCND2_Q477Pfs*101	HLA-C03:03	KAAWKLQLL	0.9963	0.9901	0.4967	196.4	0.557	3.12	1/888	1/7086
INDEL	Breast	KCND2_Q477Pfs*101	HLA-A02:01	LQLLIVLQV	0.9337	0.5151	0.5213	236.7	1.8303	3.12	1/888	1/7086
INDEL	Breast	KCND2_Q477Pfs*101	HLA-A02:01	LLIVLQVTV	0.9838	0.5883	0.3866	39.2	0.5099	3.12	1/888	1/7086
INDEL	Breast	KCND2_Q477Pfs*101	HLA-C03:03	LIVLQVTVL	0.9957	0.9895	1.0341	481.2	0.9852	3.12	1/888	1/7086
INDEL	Breast	KCND2_Q477Pfs*101	HLA-B15:01	LQVTVLHCL	0.966	0.918	0.9889	219	0.9779	3.12	1/888	1/7086
INDEL	Breast	KCND2_Q477Pfs*101	HLA-A02:01	KLFASQMPM	0.9813	0.6883	0.5941	24.4	0.3348	3.12	1/888	1/7086
INDEL	Breast	KCND2_Q477Pfs*101	HLA-B15:01	KLFASQMPM	0.9964	0.9593	0.834	35.6	0.1751	3.12	1/888	1/7086
INDEL	Breast	KCND2_Q477Pfs*101	HLA-B15:01	YQEAIKVVY	0.9992	0.8045	0.0142	144.7	0.7151	3.12	1/888	1/7086
INDEL	Breast	KCND2_Q477Pfs*101	HLA-B15:01	VVYKNSARF	0.9943	0.8596	0.2868	82.1	0.4401	3.12	1/888	1/7086
INDEL	Breast	KCND2_Q477Pfs*101	HLA-C03:03	VVYKNSARF	0.9452	0.9871	1.3416	177.1	0.5197	3.12	1/888	1/7086
INDEL	Breast	KCND2_Q477Pfs*101	HLA-A02:01	KLQLLIVLQV	0.9697	0.6632	0.9642	116.3	1.1659	3.12	1/888	1/7086
INDEL	Breast	KCND2_Q477Pfs*101	HLA-B15:01	KLFASQMPMY	0.9998	0.9482	0.2165	23.2	0.099	3.12	1/888	1/7086
INDEL	Breast	KCND2_Q477Pfs*101	HLA-B15:01	MYQEAIKVVY	0.9765	0.7093	1.0524	129.1	0.6509	3.12	1/888	1/7086
INDEL	Breast	KCND2_Q477Pfs*101	HLA-C07:02	FRSDVWREHL	0.9977	0.958	0.2727	319.9	0.2116	3.12	1/888	1/7086
INDEL	Breast	KCND2_Q477delinsHHV	HLA-C07:02	THHVHHHLL	0.5529	0.9543	0.259	234.8	0.1543	3.12	1/888	1/7086
INDEL	Breast	STAU2_M423delinsKAEFLFV	HLA-C07:02	VYQEKAEFL	0.7458	0.9677	0.0084	308.9	0.2037	34.89	1/888	1/7086
INDEL	Breast	POP1_E162Afs*28	HLA-B15:01	LQEIAQKAY	0.9953	0.888	0.2268	270.7	1.1459	35.42	1/888	1/7086
INDEL	Breast	POP1_E162Afs*28	HLA-B15:01	RLQEIAQKAY	0.9999	0.8846	0.0539	60.3	0.3215	35.42	1/888	1/7086
INDEL	Breast	POP1_E162Afs*28	HLA-A02:01	RLQEIAQKAYL	0.9977	0.6689	0.1947	217.6	1.7356	35.42	1/888	1/7086
INDEL	Breast	SMARCA2_R1370Mfs*23	HLA-A02:01	GMLPYWINA	0.9868	0.7962	0.1039	22.9	0.314	56.18	1/888	1/7086
INDEL	Breast	SMARCA2_R1370Mfs*23	HLA-C03:03	WINASALPL	0.9977	0.9881	1.7038	25.7	0.1132	56.18	1/888	1/7086
INDEL	Breast	SMARCA2_R1370Mfs*23	HLA-A02:01	MLPYWINASA	0.9356	0.6828	0.6273	52.3	0.6542	56.18	1/888	1/7086
INDEL	Breast	SMARCA2_R1370Mfs*23	HLA-C03:03	LPYWINASAL	0.9933	0.9847	1.975	390.2	0.8463	56.18	1/888	1/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-B07:02	APAIQPVL	0.9964	0.7344	0.0255	100.2	0.2968	724.13	2/888	2/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-C03:03	SSLSHISAL	0.9998	0.992	0.1132	12	0.0425	724.13	1/888	1/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-C03:03	HAHADAPAI	0.984	0.9944	0.3124	28	0.1228	724.13	1/888	1/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-A02:01	AIQPVLWTT	0.7836	0.8093	1.192	249.4	1.8972	724.13	3/888	3/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-C03:03	MSSLSHISAL	0.9998	0.9889	1.2398	176.1	0.5176	724.13	1/888	1/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-B07:02	QPVLWTTPPL	0.9713	0.6432	0.7226	32.7	0.1156	724.13	2/888	2/7086
INDEL	Breast	JMJD1C_V1416Hfs*47	HLA-B15:01	GQHHSTSY	0.9999	0.8082	0.3736	90.6	0.4823	22.75	1/888	1/7086
INDEL	Breast	JMJD1C_V1416Hfs*47	HLA-B15:01	FIKYHFGLY	0.9947	0.7413	0.5886	61.5	0.3285	22.75	1/888	1/7086
INDEL	Breast	JMJD1C_V1416Hfs*47	HLA-B15:01	MQGQHHSTSY	0.9999	0.6405	0.388	9.3	0.0154	22.75	1/888	1/7086
INDEL	Breast	JMJD1C_V1416Hfs*47	HLA-B15:01	RMQGQHHSTSY	1	0.6506	0.2102	64.8	0.3479	22.75	1/888	1/7086
INDEL	Breast	FAR1_M450delinsKSLYHL	HLA-C03:03	YVLNEEKSL	0.9977	0.9925	0.4548	180.4	0.5264	128.33	1/888	1/7086
INDEL	Breast	FAR1_M450delinsKSLYHL	HLA-B15:01	VLNEEKSLY	0.9984	0.9518	0.0495	207.1	0.9382	128.33	1/888	1/7086
INDEL	Breast	FAR1_M450delinsKSLYHL	HLA-C03:03	KSLYHLSGL	0.9794	0.9898	1.5707	451.9	0.9368	128.33	1/888	1/7086
INDEL	Breast	FAR1_M450delinsKSLYHL	HLA-B15:01	YVLNEEKSLY	0.9993	0.9504	0.3089	364	1.4068	128.33	1/888	1/7086
INDEL	Breast	FAR1_M450delinsKSLYHL	HLA-A02:01	SLYHLSGLPA	0.9803	0.5787	0.5019	83.8	0.9397	128.33	1/888	1/7086
INDEL	Breast	FAR1_M450delinsKSLYHL	HLA-A02:01	VLNEEKSLYHL	0.9982	0.5605	0.3386	143.7	1.3401	128.33	1/888	1/7086
INDEL	Breast	FAR1_M450delinsKSLYHL	HLA-A02:01	SLYHLSGLPAA	0.9855	0.6975	0.6429	56.6	0.6961	128.33	1/888	1/7086
INDEL	Breast	CKAP5_I668_A669insTQKNQILLWHLI	HLA-B15:01	HLIAQKGNF	0.9943	0.8935	1.0496	151.3	0.7399	302.31	1/888	1/7086
INDEL	Breast	DYNC2H1_V2941Efs*10	HLA-A02:01	QMITENTSV	0.9738	0.5507	0.3577	120.5	1.1928	6.92	1/888	1/7086
INDEL	Breast	TTLL5_G307Kfs*20	HLA-B15:01	KQEKGFWQRY	0.9992	0.8822	0.1302	230.2	1.0151	21.38	1/888	1/7086
INDEL	Breast	AOC3_Q280_A283del	HLA-A02:01	SLAQLEAGL	0.9394	0.7489	0.281	75	0.8684	18.74	1/888	1/7086
INDEL	Breast	AOC3_Q280_A283del	HLA-A02:01	QLEAGLVNV	0.9625	0.6535	0.6837	104.8	1.0888	18.74	1/888	1/7086
INDEL	Breast	AOC3_Q280_A283del	HLA-A02:01	SLAQLEAGLV	0.9602	0.7517	0.9889	164.5	1.4611	18.74	1/888	1/7086
INDEL	Breast	AOC3_Q280_A283del	HLA-A02:01	AQLEAGLVNV	0.9931	0.6752	0.0523	32.9	0.4387	18.74	1/888	1/7086
INDEL	Breast	STXBP4_S119Lfs*30	HLA-B15:01	LIKVMYITY	0.9936	0.8482	0.348	347	1.3653	5.02	1/888	1/7086
INDEL	Breast	STXBP4_S119Lfs*30	HLA-B15:01	VMYITYRSF	0.9934	0.8771	0.5213	13.5	0.0346	5.02	1/888	1/7086
INDEL	Breast	STXBP4_S119Lfs*30	HLA-C07:02	FRRIWTSSL	0.8103	0.9685	0.193	25.9	0.0097	5.02	1/888	1/7086
INDEL	Breast	STXBP4_S119Lfs*30	HLA-A02:01	RIWTSSLNI	0.9395	0.6094	1.1173	142.1	1.3291	5.02	1/888	2/7086
INDEL	Breast	STXBP4_S119Lfs*30	HLA-B15:01	SLNIKSFFF	0.9418	0.8831	0.3769	360.3	1.3982	5.02	1/888	1/7086
INDEL	Breast	STXBP4_S119Lfs*30	HLA-B15:01	LLIKVMYITY	0.9966	0.7637	1.9978	167.1	0.7953	5.02	1/888	1/7086
INDEL	Breast	HMCN1_N4411Sfs*13	HLA-C07:02	SRNNTSSSL	0.8109	0.9448	0.6692	221.9	0.1455	4.91	1/888	1/7086
INDEL	Breast	HMCN1_N4411Sfs*13	HLA-C07:01	SRNNTSSSL	0.9955	0.7142	0.5245	157	0.0611	4.91	1/888	1/7086
INDEL	Breast	HMCN1_N4411Sfs*13	HLA-A03:01	AIYGTVSHFSR	0.9918	0.7562	0.5419	377.8	1.0007	4.91	1/888	1/7086
INDEL	Breast	ZNF432_V206Ffs*58	HLA-B57:01	LSRSLSSLI	0.9884	0.9371	1.12	437.8	0.6771	5.92	1/888	1/7086
INDEL	Breast	ZNF432_V206Ffs*58	HLA-C07:02	SRSLSSLIM	0.8842	0.9215	0.3866	323.2	0.2139	5.92	1/888	1/7086
INDEL	Breast	ZNF432_V206Ffs*58	HLA-C07:01	SRSLSSLIM	0.9985	0.6685	0.3124	214.3	0.0808	5.92	1/888	1/7086
INDEL	Breast	ZNF432_V206Ffs*58	HLA-B57:01	LSSLIMREF	0.9992	0.9512	0.0344	75.3	0.1906	5.92	1/888	1/7086
INDEL	Breast	ZNF432_V206Ffs*58	HLA-B57:01	RTHEIEKNHF	0.9997	0.9783	0.1025	243.1	0.4383	5.92	1/888	1/7086
INDEL	Breast	ZNF432_V206Ffs*58	HLA-B57:01	SLSSLIMREF	0.9965	0.9542	1.9682	346.3	0.5674	5.92	1/888	1/7086
INDEL	Breast	ZNF432_V206Ffs*58	HLA-B57:01	RSLSSLIMREF	0.9999	0.9717	0.0875	98	0.2288	5.92	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-B15:17	ISMSDSKW	0.9981	0.8777	1.9543	110.4	1.3238	3.5	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-B15:17	YISMSDSKW	0.9596	0.7928	1.1855	43	0.6745	3.5	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-B15:17	RTRSSANAI	0.9437	0.8618	1.1763	29.5	0.4871	3.5	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-C15:05	RTRSSANAI	0.9321	0.9135	1.3562	348.3	0.2278	3.5	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-B15:17	SANAISTSW	0.9976	0.9183	0.0267	14.9	0.2359	3.5	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-B15:17	WAGGSSTMW	0.9851	0.9381	1.1532	47.8	0.7354	3.5	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-B15:17	STMWSSTRV	0.8759	0.9289	1.6818	131.2	1.4692	3.5	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-C15:05	STMWSSTRV	0.999	0.8878	0.6095	168.7	0.0973	3.5	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-B07:05	APRSCCSSW	0.9902	0.5292	1.3988	135.5	0.4186	3.5	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-B15:17	ASQAWSPSM	0.9926	0.9171	0.8065	16.1	0.2571	3.5	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-C15:05	ASQAWSPSM	0.9966	0.9418	0.511	444.9	0.2979	3.5	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-B15:17	SMSACWSTW	0.9734	0.9808	0.6314	56	0.8394	3.5	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-A33:01	SACWSTWPR	0.9866	0.511	0.3577	12.3	0.0201	3.5	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-A33:01	DSKWACSTWR	0.9896	0.5991	0.585	43.2	0.1249	3.5	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-B15:17	SSANAISTSW	0.9989	0.9181	0.2287	12.8	0.1937	3.5	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-B15:17	TSWAGGSSTM	0.9947	0.9706	1.5707	54.2	0.8162	3.5	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-B15:17	VAPRSCCSSW	0.9909	0.8424	1.473	121.3	1.4074	3.5	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-B15:17	VSPTRASQAW	0.9921	0.7339	0.9455	43.1	0.6754	3.5	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-B15:17	MSDSKWACSTW	0.9988	0.9675	0.8468	43.2	0.677	3.5	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-B15:17	RSSANAISTSW	0.9993	0.8843	0.1369	18.3	0.2978	3.5	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-B15:17	TSWAGGSSTMW	0.9993	0.9222	0.3283	22	0.3653	3.5	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-B15:17	RVAPRSCCSSW	0.9988	0.818	0.2653	53	0.801	3.5	1/888	1/7086
INDEL	Breast	PADI2_D210Kfs*72	HLA-B15:17	QAWSPSMSACW	0.9967	0.9346	0.5829	74	1.0187	3.5	1/888	1/7086
INDEL	Breast	FAM193B_S205Wfs*57	HLA-B15:17	STTSTQTSL	0.9035	0.8378	0.651	117.4	1.3797	9.93	1/888	1/7086
INDEL	Breast	FAM193B_S205Wfs*57	HLA-B15:17	TTSTQTSLL	0.9022	0.7992	1.0837	154.4	1.6176	9.93	1/888	1/7086
INDEL	Breast	FAM193B_S205Wfs*57	HLA-B15:17	STQTSLLPL	0.9536	0.7735	0.9315	94	1.1917	9.93	1/888	1/7086
INDEL	Breast	FAM193B_S205Wfs*57	HLA-B15:17	SSFLSAHKLW	0.9973	0.9715	0.6154	8.6	0.1056	9.93	1/888	1/7086
INDEL	Breast	FAM193B_S205Wfs*57	HLA-B15:17	RSTTSTQTSL	0.9701	0.8399	1.6564	70.7	0.99	9.93	1/888	1/7086
INDEL	Breast	GSE1_L50Pfs*87	HLA-B15:17	TSSAPGRAI	0.8564	0.922	1.2334	190.7	1.8298	37.4	1/888	1/7086
INDEL	Breast	GSE1_L50Pfs*87	HLA-B15:17	SSAPGRAIL	0.974	0.9143	0.3152	124.5	1.4281	37.4	1/888	1/7086
INDEL	Breast	GSE1_L50Pfs*87	HLA-C15:05	SSAPGRAIL	0.999	0.8771	0.2102	229.1	0.1408	37.4	1/888	1/7086
INDEL	Breast	TP53_G108Ffs*40	HLA-B15:17	KTYQGSYF	0.9966	0.9524	0.4456	8.6	0.1054	15.34	1/888	1/7086
INDEL	Breast	TP53_G108Ffs*40	HLA-B15:17	GSYFPSGLL	0.9775	0.9762	0.6818	18.7	0.3052	15.34	1/888	1/7086
INDEL	Breast	TP53_G108Ffs*40	HLA-C15:05	GSYFPSGLL	0.9978	0.9297	0.5904	193.5	0.1151	15.34	1/888	1/7086
INDEL	Breast	TP53_G108Ffs*40	HLA-B15:17	GSYFPSGLLAF	0.9993	0.9482	0.1609	20.4	0.3363	15.34	1/888	1/7086
INDEL	Breast	SARM1_Y479Ifs*102	HLA-B08:01	ELKTFANIL	0.9902	0.6676	0.9079	416	0.6574	1.85	2/888	2/7086
INDEL	Breast	SARM1_Y479Ifs*102	HLA-B08:01	ELKTFANIL	0.9902	0.6676	0.9079	416	0.6574	1.85	2/888	2/7086
INDEL	Breast	SARM1_S480Lfs*101	HLA-B08:01	ELKTFANYL	0.9665	0.6328	0.8749	453.4	0.7074	1.85	2/888	2/7086
INDEL	Breast	SARM1_S480Lfs*101	HLA-B08:01	ELKTFANYL	0.9665	0.6328	0.8749	453.4	0.7074	1.85	2/888	2/7086
INDEL	Breast	RPRD1B_K275Nfs*51	HLA-B27:05	HRGLSPPAL	0.9983	0.7569	0.4865	431.6	1.1136	31.21	1/888	1/7086
INDEL	Breast	RPRD1B_K275Nfs*51	HLA-B27:05	RHRGLSPPAL	0.988	0.5934	1.4985	447	1.1449	31.21	1/888	1/7086
INDEL	Breast	GIPC1_N296Mfs*68	HLA-B35:03	LPSLTSSSL	0.9914	0.8174	0.0932	48.5	0.0092	63.18	1/888	1/7086
INDEL	Breast	GIPC1_N296Mfs*68	HLA-A11:01	TSGAPLGTPR	0.9762	0.5178	1.1952	426.5	1.6072	63.18	1/888	1/7086
INDEL	Breast	ZFP36L2_T38Dfs*46	HLA-C16:01	RAGIPPTAL	0.9781	0.988	0.2543	36.2	0.1047	435	1/888	1/7086
INDEL	Breast	ZFP36L2_T38Dfs*46	HLA-C16:01	RAQPRQLLA	0.8313	0.9669	0.5924	477.9	1.335	435	1/888	1/7086
INDEL	Breast	AP5B1_T858Mfs*42	HLA-B27:02	WRGTTSVGW	0.9718	0.5598	0.8378	224.5	0.0843	9.06	1/888	1/7086
INDEL	Breast	AP5B1_T858Mfs*42	HLA-B27:02	LRMTGPCCPW	0.9989	0.5123	1.2661	194.7	0.0689	9.06	1/888	1/7086
INDEL	Breast	WWP2_V806Sfs*48	HLA-C16:01	SVATDHRSF	0.5042	0.9766	0.2825	273.4	0.8739	13.91	1/888	1/7086
INDEL	Breast	WWP2_V806Sfs*48	HLA-C16:01	ATDHRSFAL	0.9747	0.983	0.2996	153.2	0.5222	13.91	1/888	1/7086
INDEL	Breast	WWP2_V806Sfs*48	HLA-C16:01	VATDHRSFAL	0.9887	0.9825	0.3956	447.4	1.2757	13.91	1/888	1/7086
INDEL	Breast	BID_I83Rfs*31	HLA-C16:01	GTAWTVASL	0.9069	0.9876	0.637	157.9	0.5368	16.45	1/888	1/7086
INDEL	Breast	BID_I83Rfs*31	HLA-C02:02	GTAWTVASL	0.6886	0.9872	0.5128	422	0.2809	16.45	1/888	1/7086
INDEL	Breast	TP53_S90Pfs*33	HLA-C03:04	VSVWASCIL	0.9969	0.9927	1.1307	79.8	0.3114	35.16	1/888	1/7086
INDEL	Breast	RRAGB_Y167Tfs*34	HLA-C03:04	YTNHAWRPF	0.9791	0.9622	1.5485	99.2	0.3613	8.27	1/888	1/7086
INDEL	Breast	RRAGB_Y167Tfs*34	HLA-C03:04	RPFCRILQM	0.8206	0.9793	0.8108	292.1	0.7114	8.27	1/888	1/7086
INDEL	Breast	RRAGB_Y167Tfs*34	HLA-A68:01	YTNHAWRPFCR	0.9911	0.6819	1.5485	126.6	1.0527	8.27	1/888	1/7086
INDEL	Breast	SERPINA1_K283Nfs*41	HLA-C15:02	ISSPSSWKM	0.9919	0.8612	0.3914	278	0.3005	36.85	1/888	1/7086
INDEL	Breast	SERPINA1_K283Nfs*41	HLA-C15:02	KTEGLPAYI	0.9833	0.8761	0.4167	139.4	0.1448	36.85	1/888	1/7086
INDEL	Breast	SERPINA1_K283Nfs*41	HLA-C15:02	YIYPNCPLL	0.9939	0.8597	0.1746	221.7	0.2411	36.85	1/888	1/7086
INDEL	Breast	SERPINA1_K283Nfs*41	HLA-A02:01	FLPDEGNYST	0.896	0.8394	0.361	99.3	1.0539	36.85	1/888	1/7086
INDEL	Breast	CDH1_N315Ifs*41	HLA-A32:01	SSVWSPLGW	0.9383	0.9893	0.2856	409.9	0.6438	14.69	1/888	1/7086
INDEL	Breast	CDH1_N315Ifs*41	HLA-A32:01	RVSLRIPWW	0.9883	0.9943	0.1915	177.3	0.3155	14.69	1/888	1/7086
INDEL	Breast	CDH1_N315Ifs*41	HLA-A32:01	VSLRIPWWF	0.9119	0.9537	0.9889	245.1	0.4188	14.69	1/888	1/7086
INDEL	Breast	CDH1_N315Ifs*41	HLA-A32:01	RIPWWFKLL	0.9196	0.9828	0.4018	455.1	0.7027	14.69	1/888	1/7086
INDEL	Breast	CDH1_N315Ifs*41	HLA-A32:01	RVSLRIPWWF	0.9819	0.9762	1.2862	128.4	0.2246	14.69	1/888	1/7086
INDEL	Breast	CDH1_N315Ifs*41	HLA-B44:02	QESSVWSPLGW	0.9995	0.7785	0.262	18	0.01	14.69	1/888	1/7086
INDEL	Breast	CDH1_N315Ifs*41	HLA-B44:02	TERVSLRIPWW	0.9884	0.692	1.4399	267.7	0.2838	14.69	1/888	1/7086
INDEL	Breast	CDH1_N315Ifs*41	HLA-A32:01	RIPWWFKLLTF	0.998	0.9767	1.1617	298	0.4937	14.69	1/888	1/7086
INDEL	Breast	RUNX1_L85Cfs*10	HLA-A32:01	KTCPSLSRW	0.9986	0.9575	0.0084	169	0.3008	46.32	1/888	1/7086
INDEL	Breast	P4HA3_K174Nfs*63	HLA-A32:01	MTASKLARW	0.9904	0.9692	0.0904	142.4	0.2541	12.32	1/888	1/7086
INDEL	Breast	P4HA3_K174Nfs*63	HLA-A32:01	KLARWPMTW	0.9954	0.9938	0.0109	5.1	0.008	12.32	1/888	1/7086
INDEL	Breast	P4HA3_K174Nfs*63	HLA-A32:01	IITMPFHGW	0.9429	0.9719	0.3639	458	0.7065	12.32	1/888	1/7086
INDEL	Breast	P4HA3_K174Nfs*63	HLA-A33:01	ITMPFHGWR	0.9856	0.6572	0.2778	16.6	0.0364	12.32	1/888	1/7086
INDEL	Breast	P4HA3_K174Nfs*63	HLA-A33:01	TMPFHGWRR	0.9872	0.6847	0.7749	29	0.0764	12.32	1/888	1/7086
INDEL	Breast	P4HA3_K174Nfs*63	HLA-B14:02	FHGWRRLSV	0.9817	0.7276	0.7247	342.1	0.0281	12.32	1/888	1/7086
INDEL	Breast	P4HA3_K174Nfs*63	HLA-A32:01	MTWGIITMPF	0.9844	0.9836	1.4064	12.7	0.0189	12.32	1/888	1/7086
INDEL	Breast	P4HA3_K174Nfs*63	HLA-A33:01	ITMPFHGWRR	0.9914	0.7616	0.1039	21.2	0.0507	12.32	1/888	1/7086
INDEL	Breast	TBX3_L207Qfs*19	HLA-A32:01	HQQHFRQTW	0.9733	0.9895	0.0697	201.8	0.3553	48.84	1/888	1/7086
INDEL	Breast	TBX3_L207Qfs*19	HLA-A32:01	RQTWIYFGL	0.9447	0.8807	0.6556	56	0.1026	48.84	1/888	1/7086
INDEL	Breast	BAHCC1_S1322Afs*42	HLA-C03:04	IAQGFMGSL	0.9994	0.986	0.4153	40.4	0.18	3.58	1/888	1/7086
INDEL	Breast	BAHCC1_S1322Afs*42	HLA-A32:01	SLCSASWLTW	0.9727	0.9895	0.4718	237.1	0.4062	3.58	1/888	1/7086
INDEL	Breast	CDCA7L_K359Dfs*60	HLA-A02:01	GLLWCARTV	0.9705	0.7749	0.4825	61.7	0.7496	38.78	1/888	1/7086
INDEL	Breast	CDCA7L_K359Dfs*60	HLA-A02:01	LLWCARTVL	0.9495	0.7043	0.7304	68.6	0.8151	38.78	1/888	1/7086
INDEL	Breast	CDCA7L_K359Dfs*60	HLA-B07:02	GPGLGVSPL	0.9994	0.5393	0.4737	28.5	0.1038	38.78	1/888	1/7086
INDEL	Breast	CDCA7L_K359Dfs*60	HLA-A02:01	GLLWCARTVL	0.8487	0.644	1.7612	215.8	1.7268	38.78	1/888	1/7086
INDEL	Breast	CDCA7L_K359Dfs*60	HLA-A02:01	VLWTMPAEPL	0.9799	0.6811	1.3562	75.3	0.871	38.78	1/888	1/7086
INDEL	Breast	PDE4B_E333Kfs*13	HLA-B27:05	SRFGVNTKM	0.9999	0.9188	0.0427	59.9	0.1966	25.72	1/888	1/7086
INDEL	Breast	PDE4B_E333Kfs*13	HLA-B27:05	SRFGVNTKMK	0.9998	0.9332	0.3698	120.9	0.3997	25.72	1/888	1/7086
INDEL	Breast	PDE4B_E333Kfs*13	HLA-B27:05	SRFGVNTKMKI	0.9999	0.9269	0.2227	321.3	0.895	25.72	1/888	1/7086
INDEL	Breast	PPP1R12B_N593Mfs*28	HLA-C02:02	TAMGLQLLL	0.8956	0.9759	0.0808	456.8	0.3108	11.61	1/888	1/7086
INDEL	Breast	PPP1R12B_N593Mfs*28	HLA-A02:01	QLLLCSPLL	0.9196	0.507	0.6212	54	0.6707	11.61	1/888	1/7086
INDEL	Breast	PPP1R12B_N593Mfs*28	HLA-A02:01	LLCSPLLEQI	0.9776	0.5358	0.8723	137.9	1.3003	11.61	1/888	1/7086
INDEL	Breast	CDK5RAP2_L4_D9del	HLA-A02:01	MMDVTVPGTL	0.8982	0.7794	0.9621	125	1.2217	46.2	1/888	1/7086
INDEL	Breast	CDK5RAP2_L4_D9del	HLA-C05:01	MMDVTVPGTL	0.9999	0.9584	0.3529	422.8	0.1689	46.2	1/888	1/7086
INDEL	Breast	RHOBTB1_R401Sfs*14	HLA-C05:01	VSDPAPVSL	1	0.9661	0.0014	12.7	0.0081	8.86	1/888	1/7086
INDEL	Breast	RHOBTB1_R401Sfs*14	HLA-C05:01	VVSDPAPVSL	0.9999	0.9716	0.262	191.4	0.0897	8.86	1/888	1/7086
INDEL	Breast	TP53_R110Sfs*14	HLA-A02:01	YQGSYGFSV	0.9865	0.6851	0.2335	14.6	0.1795	18.46	1/888	1/7086
INDEL	Breast	TP53_R110Sfs*14	HLA-C12:03	FSVWASCIL	0.972	0.9867	0.9079	39.7	0.1707	18.46	1/888	1/7086
INDEL	Breast	CDR1_W188Gfs*50	HLA-A02:01	RLLEDMDFL	0.996	0.6967	0.0014	6.7	0.0617	14.52	1/888	1/7086
INDEL	Breast	CDR1_W188Gfs*50	HLA-A02:01	FLEDMDFLEDV	0.9958	0.7312	1.3344	7.3	0.0724	14.52	1/888	1/7086
INDEL	Breast	MGAT4A_Q346Kfs*35	HLA-C03:04	FASDLPFSNM	0.9999	0.995	0.2482	58.6	0.242	40.41	1/888	1/7086
INDEL	Breast	MGAT4A_Q346Kfs*35	HLA-C03:04	FASDLPFSNML	1	0.9943	0.2727	444.8	0.9246	40.41	1/888	1/7086
INDEL	Breast	MIB2_V699Dfs*67	HLA-B07:02	LPQGSRASC	0.9778	0.6246	0.6352	67.7	0.2187	1.59	1/888	1/7086
INDEL	Breast	MIB2_V699Dfs*67	HLA-B07:02	GPDPHPGGPL	0.9988	0.6463	0.4167	65.7	0.2133	1.59	1/888	1/7086
INDEL	Breast	ARHGEF38_E171del	HLA-A02:01	AMQVIGVFL	0.9114	0.5352	0.4986	227.4	1.7827	2.07	1/888	1/7086
INDEL	Breast	CNOT1_N1586Hfs*16	HLA-A02:01	FLPTHGIFSPA	0.9665	0.7313	1.0978	48.9	0.6182	75.04	1/888	1/7086
INDEL	Breast	SYTL1_D454Sfs*?	HLA-A02:01	VLPDSVQGL	0.9859	0.6501	0.0299	98.3	1.0472	9.35	1/888	1/7086
INDEL	Breast	SYTL1_D454Sfs*?	HLA-A32:01	SALCSITPW	0.9353	0.9748	0.9841	220.4	0.3825	9.35	1/888	1/7086
INDEL	Breast	SYTL1_D454Sfs*?	HLA-C01:02	ITPWCTMAL	0.5682	0.9306	0.4001	469.4	0.0122	9.35	1/888	1/7086
INDEL	Breast	SYTL1_D454Sfs*?	HLA-B35:03	VPSSPSGTM	0.9247	0.7478	0.3461	483.8	0.0832	9.35	1/888	1/7086
INDEL	Breast	SYTL1_D454Sfs*?	HLA-B35:03	SAWAPAAAM	0.9813	0.9465	0.2727	478	0.0821	9.35	1/888	1/7086
INDEL	Breast	SYTL1_D454Sfs*?	HLA-A32:01	RSSCGKPSW	0.9747	0.9864	0.2227	408.6	0.642	9.35	1/888	1/7086
INDEL	Breast	SYTL1_D454Sfs*?	HLA-A32:01	RANGWMAFY	0.9498	0.9685	0.0495	86.3	0.157	9.35	1/888	1/7086
INDEL	Breast	SYTL1_D454Sfs*?	HLA-A02:01	FVLPDSVQGL	0.9776	0.6159	0.1182	84.5	0.9457	9.35	1/888	1/7086
INDEL	Breast	SYTL1_D454Sfs*?	HLA-A32:01	TMGPWPTASW	0.9602	0.9951	0.0745	312.4	0.5137	9.35	1/888	1/7086
INDEL	Breast	SYTL1_D454Sfs*?	HLA-A32:01	ASWGAHASAW	0.9915	0.9877	0.2712	142.8	0.2548	9.35	1/888	1/7086
INDEL	Breast	SYTL1_D454Sfs*?	HLA-A32:01	MAFYPSEPTW	0.9703	0.9452	0.1898	215.6	0.3758	9.35	1/888	1/7086
INDEL	Breast	SYTL1_D454Sfs*?	HLA-A32:01	GTMGPWPTASW	0.9983	0.9936	0.0255	444.1	0.6887	9.35	1/888	1/7086
INDEL	Breast	NDUFA4_L18Pfs*32	HLA-A32:01	CIYWNWSYW	0.932	0.9812	0.8931	148.5	0.2655	130.41	1/888	1/7086
INDEL	Breast	RIMKLB_L307Wfs*18	HLA-A32:01	SLWPAHPAY	0.7874	0.9747	0.0523	112.6	0.1924	10.38	1/888	1/7086
INDEL	Breast	RIMKLB_L307Wfs*18	HLA-A02:01	SLWPAHPAYV	0.9968	0.8116	0.0131	7.5	0.0755	10.38	1/888	1/7086
INDEL	Breast	MKLN1_E443Tfs*14	HLA-B08:01	WKLLRTPVM	0.9449	0.7221	1.4215	248.3	0.4307	17.3	1/888	1/7086
INDEL	Breast	MKLN1_E443Tfs*14	HLA-A02:01	KLLRTPVML	0.9639	0.687	0.3657	65.2	0.7842	17.3	1/888	1/7086
INDEL	Breast	MKLN1_E443Tfs*14	HLA-C07:01	LRTPVMLGL	0.9987	0.6896	0.0848	85.4	0.0314	17.3	1/888	1/7086
INDEL	Breast	MKLN1_E443Tfs*14	HLA-B08:01	MLGLRTSSL	0.9992	0.9895	0.2054	5.6	0.007	17.3	1/888	1/7086
INDEL	Breast	MKLN1_E443Tfs*14	HLA-A02:01	VMLGLRTSSL	0.9481	0.7545	1.0366	248.4	1.8922	17.3	1/888	1/7086
INDEL	Breast	MKLN1_E443Tfs*14	HLA-B08:01	VMLGLRTSSL	0.9706	0.988	1.5067	28.6	0.0481	17.3	1/888	1/7086
INDEL	Breast	NLK_A78_A83del	HLA-C02:02	SAAAAAAAM	0.9217	0.9793	0.2335	300.2	0.175	58.57	2/888	2/7086
INDEL	Breast	NLK_A78_A83del	HLA-C02:02	SAAAAAAAM	0.9217	0.9793	0.2335	300.2	0.175	58.57	2/888	2/7086
INDEL	Breast	KCNQ5_I750Tfs*55	HLA-B08:01	CPGQKLCTL	0.9407	0.6559	0.8149	102	0.1822	1.73	1/888	1/7086
INDEL	Breast	KCNQ5_I750Tfs*55	HLA-B08:01	LQAYRKAFL	0.9832	0.5912	1.9897	192.2	0.3411	1.73	1/888	1/7086
INDEL	Breast	KCNQ5_I750Tfs*55	HLA-B08:01	LPPRKMFRL	0.9251	0.5285	0.6635	340.8	0.5557	1.73	1/888	1/7086
INDEL	Breast	KCNQ5_I750Tfs*55	HLA-A03:01	RLHSQISPR	0.9977	0.5125	0.1566	66.4	0.2505	1.73	1/888	1/7086
INDEL	Breast	GBP5_R221Vfs*36	HLA-B14:01	SSFQKRNAL	0.974	0.5638	0.4475	275.2	0.0191	9.54	1/888	1/7086
INDEL	Breast	GBP5_R221Vfs*36	HLA-C07:02	SSFQKRNAL	0.8952	0.9174	0.8515	458.3	0.2984	9.54	1/888	1/7086
INDEL	Breast	GBP5_R221Vfs*36	HLA-C07:02	KRNALSLTY	0.8716	0.7702	0.0745	239.6	0.1576	9.54	1/888	1/7086
INDEL	Breast	GBP5_R221Vfs*36	HLA-C07:02	YRSSFQKRNAL	0.9984	0.9205	0.6535	404.9	0.2667	9.54	1/888	1/7086
INDEL	Breast	DIP2C_F1297Lfs*16	HLA-B07:02	HPRAVSTSL	0.9998	0.6325	0.0031	2.4	0.0048	57.39	1/888	1/7086
INDEL	Breast	RET_P951Lfs*12	HLA-A02:01	FLLSGSSTF	0.8305	0.6625	0.9942	136.5	1.2921	24.64	1/888	1/7086
INDEL	Breast	RET_P951Lfs*12	HLA-A02:01	TLGGNLGFLL	0.9329	0.6139	1.1855	139	1.308	24.64	1/888	1/7086
INDEL	Breast	CASKIN2_L121Sfs*57	HLA-B07:02	RPRRRPWTW	0.9899	0.8204	0.4263	328.2	0.6534	17.03	1/888	1/7086
INDEL	Breast	CASKIN2_L121Sfs*57	HLA-C07:02	RRRPWTWPV	0.7802	0.9664	0.9079	155.9	0.0943	17.03	1/888	1/7086
INDEL	Breast	CASKIN2_L121Sfs*57	HLA-B07:02	RPWTWPVNL	0.9992	0.8393	0.0383	36.9	0.1269	17.03	1/888	1/7086
INDEL	Breast	CASKIN2_L121Sfs*57	HLA-B14:01	MHSMHWLHSM	0.9815	0.7983	1.9612	259.7	0.0176	17.03	1/888	1/7086
INDEL	Breast	CASKIN2_L121Sfs*57	HLA-B07:02	RPWTWPVNLA	0.9603	0.7635	1.0757	375.6	0.7067	17.03	1/888	1/7086
INDEL	Breast	GATA3_S413Qfs*94	HLA-A02:01	AIQPVLWTT	0.7836	0.8093	1.192	249.4	1.8972	349.36	1/888	1/7086
INDEL	Breast	KMT2D_Q3623del	HLA-A31:01	LALSPSSPR	0.9614	0.5526	0.0523	64.2	0.5346	32.02	1/888	1/7086
INDEL	Breast	KMT2D_Q3623del	HLA-A31:01	VLALSPSSPR	0.9692	0.5286	1.4441	235.4	1.348	32.02	1/888	1/7086
INDEL	Breast	KMT2D_Q3623del	HLA-A31:01	AVLALSPSSPR	0.9862	0.5979	0.3217	225.2	1.3071	32.02	1/888	1/7086
INDEL	Breast	FUNDC2_G181Rfs*56	HLA-A31:01	VLVTGGFFR	0.9595	0.6594	0.2604	37.3	0.303	17.96	1/888	1/7086
INDEL	Breast	FUNDC2_G181Rfs*56	HLA-A31:01	LVTGGFFRR	0.9273	0.6459	0.3593	38.9	0.3189	17.96	1/888	1/7086
INDEL	Breast	FUNDC2_G181Rfs*56	HLA-B27:05	RRLSAWHGI	0.9999	0.8788	0.5815	10.6	0.0096	17.96	1/888	1/7086
INDEL	Breast	FUNDC2_G181Rfs*56	HLA-A31:01	NVLVTGGFFR	0.9747	0.5124	0.5454	75.3	0.6051	17.96	1/888	1/7086
INDEL	Breast	FUNDC2_G181Rfs*56	HLA-A31:01	VLVTGGFFRR	0.9722	0.6184	0.458	112.6	0.8252	17.96	1/888	1/7086
INDEL	Breast	FUNDC2_G181Rfs*56	HLA-B27:05	RRLSAWHGIL	0.9998	0.874	0.6535	9.9	0.0093	17.96	1/888	1/7086
INDEL	Breast	FUNDC2_G181Rfs*56	HLA-A31:01	KNVLVTGGFFR	0.987	0.5806	0.9059	145.7	0.9808	17.96	1/888	1/7086
INDEL	Breast	FUNDC2_G181Rfs*56	HLA-A31:01	NVLVTGGFFRR	0.9578	0.552	0.3851	462.1	1.9889	17.96	1/888	1/7086
INDEL	Breast	CUL7_L335Gfs*127	HLA-C14:02	IFQPQGSPL	0.6538	0.9784	0.0762	12.2	0.0244	16.49	1/888	1/7086
INDEL	Breast	CUL7_L335Gfs*127	HLA-B51:01	FALVLSSQV	0.9447	0.6853	0.7494	453.3	0.0753	16.49	1/888	1/7086
INDEL	Breast	CUL7_L335Gfs*127	HLA-C14:02	ASFGRATTV	0.7079	0.9527	0.8043	246.6	0.7232	16.49	1/888	1/7086
INDEL	Breast	CUL7_L335Gfs*127	HLA-C07:01	GRATTVCLL	0.9953	0.6859	0.262	250.9	0.0912	16.49	1/888	1/7086
INDEL	Breast	CUL7_L335Gfs*127	HLA-C07:01	LRKTLRTWL	0.9365	0.8619	0.9595	385.7	0.1358	16.49	1/888	1/7086
INDEL	Breast	CUL7_L335Gfs*127	HLA-C07:01	WRSWALRKTL	0.9902	0.9264	1.3176	483.5	0.165	16.49	1/888	1/7086
INDEL	Breast	CUL7_L335Gfs*127	HLA-C14:02	RYFGSQQAAPI	0.782	0.9823	1.8524	429.5	1.187	16.49	1/888	1/7086
INDEL	Breast	DOCK4_N50Kfs*27	HLA-C14:02	KYQGYISF	0.9463	0.8754	0.4246	331.8	0.9416	22.05	1/888	1/7086
INDEL	Breast	DOCK4_N50Kfs*27	HLA-C14:02	YISFQLRSL	0.9777	0.9633	0.8422	151	0.4772	22.05	1/888	1/7086
INDEL	Breast	DOCK4_N50Kfs*27	HLA-C14:02	KYQGYISFQL	0.8017	0.9569	1.8326	317.7	0.9067	22.05	1/888	1/7086
INDEL	Breast	DOCK4_N50Kfs*27	HLA-C14:02	GYISFQLRSL	0.7874	0.9751	0.3542	375.7	1.0505	22.05	1/888	1/7086
INDEL	Breast	TP53_R110Sfs*14	HLA-A24:02	TYQGSYGFSV	0.9447	0.693	1.1056	218.3	0.3859	24.15	1/888	1/7086
INDEL	Breast	TP53_R110Sfs*14	HLA-A23:01	TYQGSYGFSVW	0.9994	0.7543	0.0979	115.3	0.3809	24.15	1/888	1/7086
INDEL	Breast	TP53_R110Sfs*14	HLA-A24:02	TYQGSYGFSVW	0.9997	0.9244	0.0919	108.7	0.226	24.15	1/888	1/7086
INDEL	Breast	TMC6_R129_L133del	HLA-C14:02	RSAWPSLEL	0.993	0.9759	0.3352	226.3	0.6731	10.28	1/888	1/7086
INDEL	Breast	CDC25B_F197Cfs*43	HLA-B07:02	RVGQPQGSL	0.9632	0.7033	0.9357	173.6	0.4298	161.25	1/888	1/7086
INDEL	Breast	DDX21_A376Hfs*10	HLA-C07:01	FSHSNLPSL	0.906	0.7314	0.4475	454.1	0.1553	66.14	1/888	1/7086
INDEL	Breast	DDX21_A376Hfs*10	HLA-C12:02	FSHSNLPSL	0.9995	0.9809	0.1448	21.3	0.0184	66.14	1/888	1/7086
INDEL	Breast	CDH1_P147Hfs*27	HLA-C03:03	LTFPNSSHI	0.9935	0.9883	0.6692	30.3	0.136	34.77	1/888	1/7086
INDEL	Breast	CDH1_P147Hfs*27	HLA-B35:01	FPNSSHISQ	0.9402	0.7472	0.4698	51.9	0.2014	34.77	1/888	1/7086
INDEL	Breast	CDH1_P147Hfs*27	HLA-B35:01	FPNSSHISQL	0.9952	0.8157	0.0808	51	0.1983	34.77	1/888	1/7086
INDEL	Breast	CDH1_P147Hfs*27	HLA-B35:01	FPNSSHISQLL	0.999	0.7399	0.0995	245	0.566	34.77	1/888	1/7086
INDEL	Breast	CDH1_P127Afs*41	HLA-C06:02	SRIAHISQLL	0.9455	0.9923	0.1596	161.3	0.0597	69.22	1/888	2/7086
INDEL	Breast	TARS2_T353Sfs*65	HLA-B07:02	LPAPRVTI	0.9994	0.5264	0.2699	94.9	0.2852	70.62	1/888	1/7086
INDEL	Breast	TARS2_T353Sfs*65	HLA-C03:04	LPAPRVTIL	0.9967	0.9864	0.1435	180.8	0.5272	70.62	1/888	1/7086
INDEL	Breast	TARS2_T353Sfs*65	HLA-B07:02	APRVTILPG	0.9974	0.6062	0.7767	47.5	0.1664	70.62	1/888	1/7086
INDEL	Breast	TARS2_T353Sfs*65	HLA-C03:04	SQIHSPSSL	0.9958	0.982	0.1821	169.7	0.5043	70.62	1/888	1/7086
INDEL	Breast	TARS2_T353Sfs*65	HLA-A02:01	ALTGLPAPRV	0.9897	0.829	0.6715	156.7	1.4203	70.62	2/888	2/7086
INDEL	Breast	TARS2_T353Sfs*65	HLA-A02:01	ALTGLPAPRV	0.9897	0.829	0.6715	156.7	1.4203	70.62	2/888	2/7086
INDEL	Breast	TARS2_T353Sfs*65	HLA-B07:02	APRVTILPGI	0.9857	0.5075	0.3445	17.3	0.0593	70.62	1/888	1/7086
INDEL	Breast	IGSF22_P356Lfs*14	HLA-B44:02	KELCVEVQW	0.9992	0.6068	0.1734	53.7	0.0691	1.03	1/888	1/7086
INDEL	Breast	SRCAP_H1256Mfs*48	HLA-B07:02	RPWPRPLA	0.9997	0.7732	0.1086	234.8	0.5247	46.65	1/888	1/7086
INDEL	Breast	SRCAP_H1256Mfs*48	HLA-B07:02	SSRPWPRPL	0.9819	0.5452	0.4967	240.5	0.5338	46.65	1/888	1/7086
INDEL	Breast	SRCAP_H1256Mfs*48	HLA-C03:04	SSRPWPRPL	0.9959	0.9831	0.267	160.1	0.4869	46.65	1/888	1/7086
INDEL	Breast	SRCAP_H1256Mfs*48	HLA-B07:02	RPWPRPLAL	0.9999	0.8206	0.0017	3.2	0.0065	46.65	1/888	1/7086
INDEL	Breast	SRCAP_H1256Mfs*48	HLA-C03:04	RPWPRPLAL	0.9531	0.9848	0.051	117	0.3992	46.65	1/888	1/7086
INDEL	Breast	SRCAP_H1256Mfs*48	HLA-B07:02	WPRPLALPL	0.9997	0.7829	0.3787	3	0.0061	46.65	1/888	1/7086
INDEL	Breast	SRCAP_H1256Mfs*48	HLA-B07:02	RPLALPLSL	0.9996	0.5098	0.0177	7	0.0127	46.65	1/888	1/7086
INDEL	Breast	SRCAP_H1256Mfs*48	HLA-C03:04	RPLALPLSL	0.9794	0.9727	0.4397	286.5	0.703	46.65	1/888	1/7086
INDEL	Breast	SRCAP_H1256Mfs*48	HLA-B07:02	LLRPPAPPL	0.9955	0.6551	0.2856	59.4	0.1963	46.65	1/888	1/7086
INDEL	Breast	SRCAP_H1256Mfs*48	HLA-C03:04	LLRPPAPPL	0.8856	0.9943	0.3386	111.4	0.388	46.65	1/888	1/7086
INDEL	Breast	SRCAP_H1256Mfs*48	HLA-B07:02	RPPAPPLPL	0.9996	0.8107	0.356	15.7	0.0517	46.65	1/888	1/7086
INDEL	Breast	SRCAP_H1256Mfs*48	HLA-A02:01	LLASAFRLL	0.9685	0.5408	0.4789	127	1.2344	46.65	2/888	2/7086
INDEL	Breast	SRCAP_H1256Mfs*48	HLA-A02:01	LLASAFRLL	0.9685	0.5408	0.4789	127	1.2344	46.65	2/888	2/7086
INDEL	Breast	SRCAP_H1256Mfs*48	HLA-C03:04	LASAFRLLL	0.9995	0.9875	0.0861	20.8	0.089	46.65	1/888	1/7086
INDEL	Breast	SRCAP_H1256Mfs*48	HLA-B07:02	RPWPRPLALP	0.9949	0.7824	0.7638	33.2	0.1168	46.65	1/888	1/7086
INDEL	Breast	SRCAP_H1256Mfs*48	HLA-B07:02	RPPAPPLPLL	0.9944	0.7813	0.3529	31.6	0.1126	46.65	1/888	1/7086
INDEL	Breast	SRCAP_H1256Mfs*48	HLA-B07:02	WPSSRPWPRPL	0.9999	0.7345	0.6674	21.5	0.0758	46.65	1/888	1/7086
INDEL	Breast	SRCAP_H1256Mfs*48	HLA-B07:02	SSRPWPRPLAL	0.9987	0.6485	1.2661	52.6	0.1805	46.65	1/888	1/7086
INDEL	Breast	SRCAP_H1256Mfs*48	HLA-B07:02	RPWPRPLALPL	0.9999	0.7926	0.3445	5.1	0.009	46.65	1/888	1/7086
INDEL	Breast	SRCAP_H1256Mfs*48	HLA-B07:02	WPRPLALPLSL	1	0.615	0.4113	13.1	0.0383	46.65	1/888	1/7086
INDEL	Breast	NPLOC4_I473Ffs*129	HLA-C03:04	FLFRKIHFL	0.7464	0.9847	0.2102	260.2	0.6644	48.78	1/888	1/7086
INDEL	Breast	NPLOC4_I473Ffs*129	HLA-A02:01	LLKTGMYWV	0.946	0.7655	0.2925	36.3	0.4778	48.78	2/888	2/7086
INDEL	Breast	NPLOC4_I473Ffs*129	HLA-A02:01	LLKTGMYWV	0.946	0.7655	0.2925	36.3	0.4778	48.78	2/888	2/7086
INDEL	Breast	NPLOC4_I473Ffs*129	HLA-B07:02	SPRHGRGLS	0.9963	0.5909	1.2301	106.2	0.31	48.78	1/888	1/7086
INDEL	Breast	NPLOC4_I473Ffs*129	HLA-C03:04	LAGSSQVSM	0.9992	0.9865	0.5264	67.2	0.2721	48.78	1/888	1/7086
INDEL	Breast	NPLOC4_I473Ffs*129	HLA-C03:04	SGAPHTRPL	0.9976	0.9701	0.2636	110.1	0.3852	48.78	1/888	1/7086
INDEL	Breast	NPLOC4_I473Ffs*129	HLA-B07:02	RPLQPCGPV	0.9976	0.5881	0.3956	12.4	0.0356	48.78	1/888	1/7086
INDEL	Breast	NPLOC4_I473Ffs*129	HLA-C03:04	FSISQNPFPF	0.9996	0.9715	1.473	101.1	0.3656	48.78	1/888	1/7086
INDEL	Breast	NPLOC4_I473Ffs*129	HLA-A02:01	FLLKTGMYWV	0.9941	0.6194	0.3769	5.1	0.0357	48.78	2/888	2/7086
INDEL	Breast	NPLOC4_I473Ffs*129	HLA-A02:01	FLLKTGMYWV	0.9941	0.6194	0.3769	5.1	0.0357	48.78	2/888	2/7086
INDEL	Breast	NPLOC4_I473Ffs*129	HLA-B07:02	SPRHGRGLSS	0.9973	0.6173	0.6295	103.5	0.3041	48.78	1/888	1/7086
INDEL	Breast	NPLOC4_I473Ffs*129	HLA-B07:02	APHTRPLQPC	0.9828	0.6436	0.7767	474.9	0.8052	48.78	1/888	1/7086
INDEL	Breast	NPLOC4_I473Ffs*129	HLA-B07:02	RPLQPCGPVS	0.9832	0.546	0.5264	422.2	0.7554	48.78	1/888	1/7086
INDEL	Breast	NPLOC4_I473Ffs*129	HLA-B07:02	APSGAPHTRPL	1	0.6444	0.2604	19.9	0.0694	48.78	1/888	1/7086
INDEL	Breast	TICAM1_A63Gfs*40	HLA-B07:02	GPAGGPPV	0.9991	0.715	1.2431	414.9	0.7482	20.59	1/888	1/7086
INDEL	Breast	TICAM1_A63Gfs*40	HLA-B07:02	GPRGAPRCV	0.9979	0.5838	0.3168	103.4	0.3039	20.59	1/888	1/7086
INDEL	Breast	TICAM1_A63Gfs*40	HLA-B07:02	GPRGAPRCVL	0.9993	0.6456	0.0888	7.6	0.0142	20.59	1/888	1/7086
INDEL	Breast	PXYLP1_I357Sfs*47	HLA-C15:02	KSSLPSTLL	0.999	0.88	0.3753	44	0.0254	10.02	1/888	1/7086
INDEL	Breast	PXYLP1_I357Sfs*47	HLA-C03:04	KSSLPSTLL	0.9875	0.9914	0.6429	330.9	0.7656	10.02	1/888	1/7086
INDEL	Breast	PXYLP1_I357Sfs*47	HLA-C15:02	SSLPSTLLM	0.9957	0.8988	0.1821	43.2	0.0244	10.02	1/888	1/7086
INDEL	Breast	PXYLP1_I357Sfs*47	HLA-C03:04	SSLPSTLLM	0.9915	0.9919	0.2499	32.6	0.149	10.02	1/888	1/7086
INDEL	Breast	PXYLP1_I357Sfs*47	HLA-C15:02	MSLCHQFSV	0.9996	0.9328	0.4951	66.9	0.0552	10.02	1/888	1/7086
INDEL	Breast	PXYLP1_I357Sfs*47	HLA-C03:04	MSLCHQFSV	0.9198	0.989	1.8644	164.6	0.4947	10.02	1/888	1/7086
INDEL	Breast	PXYLP1_I357Sfs*47	HLA-B40:01	HQFSVPWAF	0.7797	0.9343	0.3283	369.5	0.5864	10.02	1/888	1/7086
INDEL	Breast	PXYLP1_I357Sfs*47	HLA-C03:04	FQKPGSQGL	0.9841	0.9877	0.1112	363	0.8071	10.02	1/888	1/7086
INDEL	Breast	PXYLP1_I357Sfs*47	HLA-A11:01	TSAGCSVPPR	0.9858	0.6537	1.1501	226.6	1.0891	10.02	1/888	1/7086
INDEL	Breast	PXYLP1_I357Sfs*47	HLA-C15:02	KSSLPSTLLM	0.9973	0.8947	0.9036	166.4	0.1818	10.02	1/888	1/7086
INDEL	Breast	PXYLP1_I357Sfs*47	HLA-C15:02	SSLPSTLLMM	0.9926	0.8743	0.6616	435.8	0.4655	10.02	1/888	1/7086
INDEL	Breast	PNN_K351Rfs*14	HLA-A68:01	EIAIVHSDAER	0.9995	0.6342	0.3217	60.5	0.6274	68.42	1/888	1/7086
INDEL	Breast	MBD6_G887Sfs*55	HLA-A02:01	IMGSWLKGV	0.9781	0.7912	0.1718	45.4	0.5804	16.24	2/888	2/7086
INDEL	Breast	MBD6_G887Sfs*55	HLA-A02:01	IMGSWLKGV	0.9781	0.7912	0.1718	45.4	0.5804	16.24	2/888	2/7086
INDEL	Breast	MBD6_G887Sfs*55	HLA-A02:01	VLSPRIHPL	0.9897	0.5818	0.0412	29.9	0.4007	16.24	2/888	2/7086
INDEL	Breast	MBD6_G887Sfs*55	HLA-A02:01	VLSPRIHPL	0.9897	0.5818	0.0412	29.9	0.4007	16.24	2/888	2/7086
INDEL	Breast	MBD6_G887Sfs*55	HLA-A02:01	SIMGSWLKGV	0.981	0.6458	0.1039	52	0.6504	16.24	2/888	2/7086
INDEL	Breast	MBD6_G887Sfs*55	HLA-A02:01	SIMGSWLKGV	0.981	0.6458	0.1039	52	0.6504	16.24	2/888	2/7086
INDEL	Breast	TP53_R209Kfs*6	HLA-A02:01	YLDDKHFST	0.9773	0.5325	0.3089	13.2	0.1601	14.04	4/888	5/7086
INDEL	Breast	TP53_R209Kfs*6	HLA-A02:01	YLDDKHFST	0.9773	0.5325	0.3089	13.2	0.1601	14.04	4/888	5/7086
INDEL	Breast	TP53_R209Kfs*6	HLA-C05:01	YLDDKHFST	0.9988	0.9493	0.451	323.3	0.138	14.04	3/888	4/7086
INDEL	Breast	TP53_R209Kfs*6	HLA-C05:01	YLDDKHFST	0.9988	0.9493	0.451	323.3	0.138	14.04	3/888	4/7086
INDEL	Breast	TP53_I162Wfs*10	HLA-B15:01	AMAWPSTSSH	0.9991	0.9347	1.4985	403.4	1.4955	13.6	1/888	1/7086
INDEL	Breast	PEX6_L909_T910insLSLLSLP	HLA-B35:01	LPTGADLY	0.9886	0.8303	0.6154	181.8	0.4641	22.43	1/888	1/7086
INDEL	Breast	PEX6_L909_T910insLSLLSLP	HLA-B35:01	LPTGADLYSL	0.971	0.663	0.8169	248.8	0.5719	22.43	1/888	1/7086
INDEL	Breast	ZNF808_K221Nfs*18	HLA-B35:01	LPQNLSHVM	0.9979	0.7378	0.0166	7.2	0.0237	9	1/888	1/7086
INDEL	Breast	CENPF_P1754Tfs*13	HLA-B44:03	SELSFSGTY	0.9987	0.885	0.1596	14.5	0.0093	12.5	1/888	1/7086
INDEL	Breast	CENPF_P1754Tfs*13	HLA-C16:01	LSFSGTYGF	0.7646	0.9825	0.3685	38.3	0.1136	12.5	1/888	1/7086
INDEL	Breast	CENPF_P1754Tfs*13	HLA-B44:03	SELSFSGTYGF	0.9993	0.9367	0.184	39.1	0.0452	12.5	1/888	1/7086
INDEL	Breast	ATP5C1_L121_E127delinsQ	HLA-C16:01	KSEVATQVM	0.8716	0.9696	0.3318	278.6	0.8876	281.06	1/888	1/7086
INDEL	Breast	ATP5C1_L121_E127delinsQ	HLA-B44:03	SEVATQVML	0.9913	0.9234	0.0875	254.8	0.2621	281.06	1/888	1/7086
INDEL	Breast	ATP5C1_L121_E127delinsQ	HLA-B44:03	SEVATQVMLV	0.9433	0.8394	1.0524	251.2	0.2588	281.06	1/888	1/7086
INDEL	Breast	SQRDL_S361Kfs*16	HLA-C16:01	RSMMATHHV	0.8659	0.9574	0.4675	58.3	0.1961	45.76	1/888	1/7086
INDEL	Breast	ZNF317_A538Dfs*79	HLA-B08:01	MPCLRESL	0.9992	0.6881	0.1547	90.4	0.1615	20.01	1/888	1/7086
INDEL	Breast	ZNF317_A538Dfs*79	HLA-C16:01	RMPCLRESL	0.9864	0.9848	0.8065	297.4	0.9352	20.01	1/888	1/7086
INDEL	Breast	ZNF317_A538Dfs*79	HLA-B44:03	REALCVIRV	0.724	0.9425	0.1317	474.7	0.42	20.01	1/888	1/7086
INDEL	Breast	FBP1_I262Dfs*7	HLA-A02:01	LVYGGDISV	0.9833	0.5269	0.0412	39.1	0.5088	264.43	1/888	1/7086
INDEL	Breast	FBP1_I262Dfs*7	HLA-C03:03	LVYGGDISV	0.9744	0.9821	0.1168	51.4	0.2164	264.43	1/888	1/7086
INDEL	Breast	CEP350_S1968Vfs*11	HLA-B44:02	QEQPGVQITVY	0.9987	0.5485	0.0412	488.6	0.4501	18.3	1/888	1/7086
INDEL	Breast	CENPF_D1016Ffs*6	HLA-A30:01	KSISELSFTTK	0.9979	0.7109	0.2197	191.4	0.922	6.99	1/888	1/7086
INDEL	Breast	DGAT1_W334_L335del	HLA-C02:10	LAVPNHLII	0.5594	0.9721	0.1317	456.4	0.3104	74.75	1/888	1/7086
INDEL	Breast	DGAT1_W334_L335del	HLA-B15:03	LAVPNHLIIF	0.9973	0.5726	1.3	74	1.1685	74.75	1/888	1/7086
INDEL	Breast	VRK3_P137_S143del	HLA-B15:03	RQSRVTTSL	0.8622	0.6757	0.0214	5.5	0.054	10.51	1/888	1/7086
INDEL	Breast	AGTR1_D278Ifs*13	HLA-C07:02	IRDCRIAIL	0.8328	0.7431	0.6911	174	0.1091	6.03	1/888	1/7086
INDEL	Breast	AGTR1_D278Ifs*13	HLA-B15:01	WTRPCLSPF	0.9965	0.8157	0.8771	20	0.0784	6.03	1/888	1/7086
INDEL	Breast	AGTR1_D278Ifs*13	HLA-C03:03	IAILWTRPCL	0.9915	0.9919	1.2465	464.1	0.9574	6.03	1/888	1/7086
INDEL	Breast	NF1_P2696Tfs*14	HLA-C03:03	TTIPNILPA	0.9682	0.9925	0.4883	197.1	0.5582	7.29	1/888	1/7086
INDEL	Breast	SASH3_P209Afs*47	HLA-B07:02	AARGGRGAC	0.558	0.8019	0.9687	295.4	0.6121	13.98	1/888	1/7086
INDEL	Breast	SASH3_P209Afs*47	HLA-A02:01	TQWQGGLFQI	0.9038	0.5441	0.4718	64.5	0.7779	13.98	1/888	1/7086
INDEL	Breast	BAG4_C443Rfs*9	HLA-B15:03	RQARKEAVRF	0.9285	0.5027	0.1977	9.9	0.153	62.08	1/888	1/7086
INDEL	Breast	BAG4_C443Rfs*9	HLA-B15:03	RKEAVRFRPY	0.6251	0.5408	1.0069	33.1	0.6065	62.08	1/888	1/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-B15:03	SSLSHISAL	0.9867	0.8325	0.6594	79.2	1.2207	1263.05	2/888	2/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-C02:10	SSLSHISAL	0.9103	0.9804	0.1793	387.3	0.2513	1263.05	2/888	2/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-B15:03	SHISALQPL	0.7642	0.89	1.1987	70.9	1.1389	1263.05	2/888	2/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-B35:01	HAHADAPAI	0.8806	0.9418	0.6837	193.4	0.4819	1263.05	3/888	3/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-B15:03	LQHGHRHGL	0.577	0.6899	0.5583	49.3	0.8562	1263.05	2/888	2/7086
INDEL	Breast	TNKS1BP1_I1127Lfs*6	HLA-A02:01	YQFGILATT	0.9429	0.5999	0.3987	61.3	0.7455	55.62	1/888	2/7086
INDEL	Breast	ADAM15_C409del	HLA-B15:03	LLDGMGSLF	0.5392	0.9772	1.1173	95.3	1.3776	206.81	1/888	1/7086
INDEL	Breast	ADAM15_C409del	HLA-C03:02	LLDGMGSLF	0.79	0.9918	0.9173	466.2	1.3944	206.81	1/888	1/7086
INDEL	Breast	ADAM15_C409del	HLA-B15:03	SLFERLPSL	0.7881	0.828	0.0848	135.2	1.7214	206.81	1/888	1/7086
INDEL	Breast	ADAM15_C409del	HLA-C02:10	SLFERLPSL	0.9486	0.9893	0.0214	350.8	0.2206	206.81	1/888	1/7086
INDEL	Breast	ADAM15_C409del	HLA-C03:02	SLFERLPSL	0.8921	0.9767	0.0187	102.1	0.4569	206.81	1/888	1/7086
INDEL	Breast	ADAM15_C409del	HLA-B15:03	ALLDGMGSLF	0.9452	0.9624	0.5296	121.2	1.605	206.81	1/888	1/7086
INDEL	Breast	ADAM15_C409del	HLA-B58:01	KALLDGMGSLF	0.9992	0.993	0.8208	169	0.684	206.81	1/888	1/7086
INDEL	Breast	GAS6_R151Pfs*27	HLA-C03:02	KAGWGGPAL	0.9744	0.9885	0.585	154.8	0.6245	28.72	1/888	2/7086
INDEL	Breast	TP53_S303Afs*42	HLA-B15:03	HWMENISPF	0.7419	0.8336	1.1589	95.8	1.3819	36.98	1/888	1/7086
INDEL	Breast	TP53_S303Afs*42	HLA-C03:02	HWMENISPF	0.8741	0.9703	1.6818	271.2	0.9611	36.98	1/888	1/7086
INDEL	Breast	ZNF606_K650Mfs*3	HLA-B15:03	HQRTHTGEM	0.9264	0.5805	0.4769	10.7	0.1687	4.74	1/888	1/7086
INDEL	Breast	GATA3_D335Pfs*16	HLA-A02:01	CLQCLWALL	0.9472	0.8898	1.9543	270.8	1.9932	1660.34	1/888	1/7086
INDEL	Breast	GATA3_D335Pfs*16	HLA-B15:01	WALLQASQY	0.9739	0.715	1.0394	466	1.6204	1660.34	1/888	1/7086
INDEL	Breast	BCDIN3D_P30Sfs*26	HLA-A02:01	VLAPGAASL	0.9805	0.6323	0.1435	37.2	0.488	6.57	1/888	1/7086
INDEL	Breast	BCDIN3D_P30Sfs*26	HLA-B15:01	VLAPGAASL	0.9968	0.8764	0.3806	289.5	1.2039	6.57	1/888	1/7086
INDEL	Breast	BCDIN3D_P30Sfs*26	HLA-C03:04	VLAPGAASL	0.9963	0.9865	0.1963	32.8	0.1499	6.57	1/888	1/7086
INDEL	Breast	BCDIN3D_P30Sfs*26	HLA-C03:04	LAPGAASLF	0.9898	0.9936	0.367	264.9	0.6716	6.57	1/888	1/7086
INDEL	Breast	BCDIN3D_P30Sfs*26	HLA-C03:04	FSLPPSGAT	0.8743	0.9944	1.0445	388.5	0.8439	6.57	1/888	1/7086
INDEL	Breast	BCDIN3D_P30Sfs*26	HLA-B15:01	VLAPGAASLF	0.9999	0.919	0.3685	36.7	0.1802	6.57	1/888	1/7086
INDEL	Breast	BCDIN3D_P30Sfs*26	HLA-A02:01	SLFSLPPSGA	0.9072	0.8693	0.1947	164.5	1.4611	6.57	1/888	1/7086
INDEL	Breast	BCDIN3D_P30Sfs*26	HLA-B15:01	RVLAPGAASLF	0.9993	0.9453	0.167	271	1.1471	6.57	1/888	1/7086
INDEL	Breast	KIAA0430_F390Sfs*17	HLA-A31:01	VYVTSVKKTR	0.9431	0.5259	0.9297	365	1.7462	16.33	1/888	1/7086
INDEL	Breast	IP6K2_C31Wfs*7	HLA-B57:01	FVHQVGGHSW	0.9992	0.9626	0.0214	470.3	0.7141	51.59	1/888	1/7086
INDEL	Breast	IP6K2_C31Wfs*7	HLA-B53:01	FVHQVGGHSW	0.9673	0.7346	0.0315	300.9	0.3257	51.59	1/888	1/7086
INDEL	Breast	PPP1R14A_E88Kfs*77	HLA-A03:01	GLHPGAAGK	0.9982	0.7623	0.4438	66.1	0.2497	8.36	1/888	1/7086
INDEL	Breast	PPP1R14A_E88Kfs*77	HLA-A03:01	RGLHPGAAGK	0.9786	0.7244	0.834	26.4	0.0781	8.36	1/888	1/7086
INDEL	Breast	PDPR_S821Lfs*10	HLA-A02:02	CLGFVHNFL	0.9709	0.5241	0.6038	30.3	0.7433	18.63	1/888	1/7086
INDEL	Breast	FAIM3_W141Mfs*59	HLA-B15:01	FQIRNQSY	0.9997	0.8589	0.388	74.6	0.3994	1.92	1/888	1/7086
INDEL	Breast	FAIM3_W141Mfs*59	HLA-A02:01	KMVSSALFV	0.994	0.5009	0.1581	12.6	0.1518	1.92	1/888	1/7086
INDEL	Breast	FAIM3_W141Mfs*59	HLA-A32:01	KMVSSALFV	0.797	0.9755	1.0366	130.3	0.2288	1.92	1/888	1/7086
INDEL	Breast	FAIM3_W141Mfs*59	HLA-B15:01	GQGPSSSPL	0.9973	0.9046	0.9297	416.8	1.5229	1.92	1/888	1/7086
INDEL	Breast	FAIM3_W141Mfs*59	HLA-B15:01	CQFFQIRNQSY	0.9999	0.7587	0.6911	162	0.7782	1.92	1/888	1/7086
INDEL	Breast	KMT2C_E114Gfs*17	HLA-C16:01	RSVSGIGKL	0.87	0.9859	0.5328	155.1	0.5283	21.85	1/888	1/7086
INDEL	Breast	KMT2C_E114Gfs*17	HLA-C16:01	SGIGKLPGL	0.8687	0.9855	0.6929	403.8	1.1768	21.85	1/888	1/7086
INDEL	Breast	CRTC2_D223Afs*8	HLA-A02:01	LLDALTTSI	0.9889	0.5487	0.1435	19.2	0.2593	53.11	2/888	2/7086
INDEL	Breast	CRTC2_D223Afs*8	HLA-A02:01	LLDALTTSI	0.9889	0.5487	0.1435	19.2	0.2593	53.11	2/888	2/7086
INDEL	Breast	CRTC2_D223Afs*8	HLA-C05:01	LLDALTTSI	0.9999	0.9887	0.1793	26.3	0.0151	53.11	1/888	1/7086
INDEL	Breast	CRTC2_D223Afs*8	HLA-A02:01	NLLDALTTSI	0.9893	0.5127	0.6079	61.5	0.7481	53.11	2/888	2/7086
INDEL	Breast	CRTC2_D223Afs*8	HLA-A02:01	NLLDALTTSI	0.9893	0.5127	0.6079	61.5	0.7481	53.11	2/888	2/7086
INDEL	Breast	CRTC2_D222Efs*13	HLA-A02:01	NLLEVLKIV	0.992	0.644	0.4167	47.5	0.6017	53.11	2/888	2/7086
INDEL	Breast	CRTC2_D222Efs*13	HLA-A02:01	NLLEVLKIV	0.992	0.644	0.4167	47.5	0.6017	53.11	2/888	2/7086
INDEL	Breast	WDR6_K418Cfs*22	HLA-B44:02	AQLELGPAW	0.8432	0.7192	0.2352	271.7	0.287	19.03	1/888	1/7086
INDEL	Breast	SLC37A1_Y32_R39del	HLA-A02:01	FLLKPISIV	0.9962	0.5619	0.0932	9.6	0.1119	14.59	2/888	2/7086
INDEL	Breast	SLC37A1_Y32_R39del	HLA-A02:01	FLLKPISIV	0.9962	0.5619	0.0932	9.6	0.1119	14.59	2/888	2/7086
INDEL	Breast	ZNF549_H568Tfs*69	HLA-B07:02	TPEKSRMNV	0.9971	0.5073	0.721	157.9	0.4018	3.35	1/888	1/7086
INDEL	Breast	HLTF_Q86del	HLA-B35:01	VALRDPNNPY	0.9396	0.9431	1.4148	318	0.6636	62.46	1/888	1/7086
INDEL	Breast	SLC25A13_G574Dfs*22	HLA-C04:01	YFDPHPSL	1	0.6478	0.0031	136.8	0.0079	22.78	1/888	1/7086
INDEL	Breast	SLC25A13_G574Dfs*22	HLA-C07:02	VYFDPHPSL	0.9484	0.9659	0.0037	31.6	0.0117	22.78	1/888	1/7086
INDEL	Breast	SLC25A13_G574Dfs*22	HLA-C07:02	YFDPHPSLV	0.948	0.9329	0.0062	161.6	0.0986	22.78	1/888	1/7086
INDEL	Breast	SLC25A13_G574Dfs*22	HLA-C04:01	YFDPHPSLV	0.9996	0.8317	0.0014	28.5	0.0054	22.78	1/888	1/7086
INDEL	Breast	SLC25A13_G574Dfs*22	HLA-A02:01	KLCGRELVLV	0.9912	0.6138	0.4232	73.5	0.8562	22.78	1/888	1/7086
INDEL	Breast	TTI1_I629Nfs*35	HLA-C07:02	TRKRLLFAL	0.964	0.9361	0.6674	363.3	0.2402	24.46	1/888	1/7086
INDEL	Breast	TTI1_I629Nfs*35	HLA-A02:01	NIWQICNWPV	0.9118	0.6856	1.403	54.1	0.6726	24.46	1/888	1/7086
INDEL	Breast	CDH1_D479Afs*8	HLA-A02:01	VLAPWMCWM	0.9383	0.6672	0.3974	46.3	0.5897	49.5	1/888	1/7086
INDEL	Breast	ARID1B_Q788Rfs*44	HLA-B14:02	QRNPRWLSM	0.9979	0.8675	0.0601	379.6	0.0313	11.22	1/888	1/7086
INDEL	Breast	ARID1B_Q788Rfs*44	HLA-C07:02	QRNPRWLSM	0.9964	0.8585	0.0396	61	0.0295	11.22	1/888	1/7086
INDEL	Breast	ARID1B_Q788Rfs*44	HLA-C07:02	NRQDHPCRL	0.7913	0.9701	0.241	454.9	0.2965	11.22	1/888	1/7086
INDEL	Breast	ARID1B_Q788Rfs*44	HLA-A02:01	MLESVAFSRV	0.9871	0.6977	0.9621	57.9	0.7096	11.22	1/888	1/7086
INDEL	Breast	ARID1B_Q788Rfs*44	HLA-A02:01	CMLESVAFSRV	0.9967	0.5416	1.3988	101.3	1.0663	11.22	1/888	1/7086
INDEL	Breast	ZNF292_S370Ffs*21	HLA-B07:02	RPFHVCCL	0.9978	0.5798	0.4263	227.4	0.5127	22.71	1/888	1/7086
INDEL	Breast	ZNF292_S370Ffs*21	HLA-C07:02	ARPFHVCCL	0.7904	0.9533	0.0427	182.6	0.1161	22.71	1/888	1/7086
INDEL	Breast	ZNF292_S370Ffs*21	HLA-B07:02	RPFHVCCLM	0.9934	0.5908	0.5795	106.2	0.3101	22.71	1/888	1/7086
INDEL	Breast	GATA3_G334Wfs*18	HLA-B57:01	TTLWRRNANW	0.9988	0.9968	0.3956	49.7	0.1356	1418.29	1/888	1/7086
INDEL	Breast	GATA3_G334Wfs*18	HLA-B57:01	TTTLWRRNANW	0.9992	0.996	0.6058	184.7	0.3608	1418.29	1/888	1/7086
INDEL	Breast	CHD1L_V466Sfs*16	HLA-C07:02	SRHCGRNSL	0.803	0.9626	0.6392	189.9	0.1218	31.8	1/888	1/7086
INDEL	Breast	CPXM2_A495Kfs*122	HLA-B07:02	VPLRPGAV	0.9995	0.6636	0.9621	333.7	0.6599	6.49	1/888	1/7086
INDEL	Breast	CPXM2_A495Kfs*122	HLA-B07:02	HPRRPRVP	0.9992	0.5601	1.6082	344.6	0.6726	6.49	1/888	1/7086
INDEL	Breast	CPXM2_A495Kfs*122	HLA-B07:02	RPRVPLAG	0.9994	0.684	1.0955	342.9	0.6706	6.49	1/888	1/7086
INDEL	Breast	CPXM2_A495Kfs*122	HLA-C07:02	RRAGGGVPL	0.8309	0.9595	0.5512	428.9	0.2815	6.49	1/888	1/7086
INDEL	Breast	CPXM2_A495Kfs*122	HLA-B07:02	HPHPRRPRV	0.9975	0.6176	0.4491	41.7	0.147	6.49	1/888	1/7086
INDEL	Breast	CPXM2_A495Kfs*122	HLA-B07:02	HPRRPRVPL	0.9998	0.5552	0.0465	2.2	0.0043	6.49	1/888	1/7086
INDEL	Breast	CPXM2_A495Kfs*122	HLA-B07:02	RPRVPLAGL	0.9998	0.7024	0.0031	3.1	0.0063	6.49	1/888	1/7086
INDEL	Breast	CPXM2_A495Kfs*122	HLA-C07:02	HRRWKSERF	0.749	0.9686	0.5941	419.8	0.276	6.49	1/888	1/7086
INDEL	Breast	CPXM2_A495Kfs*122	HLA-C07:02	YKLLRTVHL	0.9661	0.9506	0.2978	378.4	0.2494	6.49	1/888	1/7086
INDEL	Breast	CPXM2_A495Kfs*122	HLA-C07:02	LRTVHLRGL	0.837	0.8452	0.6352	352.2	0.2332	6.49	1/888	1/7086
INDEL	Breast	CPXM2_A495Kfs*122	HLA-B07:02	VPLRPGAVPL	0.999	0.766	0.2942	6.1	0.0101	6.49	1/888	1/7086
INDEL	Breast	CPXM2_A495Kfs*122	HLA-B07:02	HPRRPRVPLA	0.9864	0.6774	0.0848	11.9	0.0333	6.49	1/888	1/7086
INDEL	Breast	CPXM2_A495Kfs*122	HLA-B07:02	RPRVPLAGLL	0.9993	0.6711	0.1547	4.7	0.0086	6.49	1/888	1/7086
INDEL	Breast	CPXM2_A495Kfs*122	HLA-B07:02	HPHPRRPRVPL	1	0.5558	0.2071	7.4	0.0137	6.49	1/888	1/7086
INDEL	Breast	CPXM2_A495Kfs*122	HLA-B07:02	HPRRPRVPLAG	0.9996	0.7265	1.211	153.4	0.3947	6.49	1/888	1/7086
INDEL	Breast	CPXM2_A495Kfs*122	HLA-B07:02	RPRVPLAGLLL	1	0.6637	0.0396	11.3	0.0308	6.49	1/888	1/7086
INDEL	Breast	GATA3_S404Qfs*109	HLA-A02:01	HMSSLQTHV	0.9903	0.5361	0.0383	82.7	0.931	1350.18	1/888	1/7086
INDEL	Breast	GATA3_S404Qfs*109	HLA-C03:04	MSSLQTHVL	0.9998	0.9882	0.2446	39.2	0.1763	1350.18	1/888	1/7086
INDEL	Breast	GATA3_S404Qfs*109	HLA-A02:01	VLPEPHLAL	0.9817	0.6795	0.0745	139	1.3078	1350.18	1/888	1/7086
INDEL	Breast	GATA3_S404Qfs*109	HLA-C17:01	VLPEPHLAL	0.7082	0.9706	0.0495	356.6	0.0942	1350.18	1/888	1/7086
INDEL	Breast	GATA3_S404Qfs*109	HLA-C03:04	VLPEPHLAL	0.9962	0.9923	0.051	160.2	0.4872	1350.18	1/888	1/7086
INDEL	Breast	GATA3_S404Qfs*109	HLA-C03:04	HAHADAPAI	0.984	0.9944	0.3413	28	0.1228	1350.18	1/888	1/7086
INDEL	Breast	GATA3_S404Qfs*109	HLA-A02:01	AIQPVLWTT	0.7836	0.8093	1.192	249.4	1.8972	1350.18	1/888	1/7086
INDEL	Breast	ARID1A_T1150Pfs*11	HLA-B57:01	QTPQSPAVPW	0.9967	0.9652	0.5435	191.9	0.3705	30.76	1/888	1/7086
INDEL	Breast	ARRDC3_V223Wfs*19	HLA-B15:01	MVWCQRQPF	0.9951	0.6111	0.7945	57.5	0.304	42.88	1/888	1/7086
INDEL	Breast	ARRDC3_V223Wfs*19	HLA-A31:01	CSSRMVWCQR	0.9711	0.5887	1.014	32.7	0.2593	42.88	1/888	1/7086
INDEL	Breast	ARRDC3_V223Wfs*19	HLA-B15:01	RMVWCQRQPF	0.9986	0.6836	1.2431	17.1	0.0572	42.88	1/888	1/7086
INDEL	Breast	ARRDC3_V223Wfs*19	HLA-A31:01	CQRQPFTKHR	0.8963	0.5048	1.1888	83.5	0.6579	42.88	1/888	1/7086
INDEL	Breast	ARRDC3_V223Wfs*19	HLA-B08:01	QPFTKHRPSM	0.9921	0.5658	0.4367	489	0.7533	42.88	1/888	1/7086
INDEL	Breast	EPB41_F353Lfs*25	HLA-A31:01	YVSDLNWPR	0.9489	0.7784	0.0495	18.7	0.1311	9.25	1/888	1/7086
INDEL	Breast	EPB41_F353Lfs*25	HLA-A31:01	LNWPRIRPR	0.9031	0.7218	0.4113	43.5	0.3597	9.25	1/888	1/7086
INDEL	Breast	EPB41_F353Lfs*25	HLA-A31:01	DYVSDLNWPR	0.9268	0.846	0.6173	169.6	1.0763	9.25	1/888	1/7086
INDEL	Breast	EPB41_F353Lfs*25	HLA-A31:01	RIRPRNLKRR	0.9807	0.5617	0.8607	27.4	0.2128	9.25	1/888	1/7086
INDEL	Breast	EPB41_F353Lfs*25	HLA-A31:01	YVSDLNWPRIR	0.9788	0.8211	1.1056	408.7	1.8632	9.25	1/888	1/7086
INDEL	Breast	ESR1_I451_I452del	HLA-B44:03	EEFVCLKSL	0.9922	0.9013	0.5419	142.6	0.1655	305.15	1/888	1/7086
INDEL	Breast	ESR1_I451_I452del	HLA-B44:03	EEFVCLKSLL	0.9475	0.9068	1.1056	217	0.2298	305.15	1/888	1/7086
INDEL	Breast	ANKHD1-EIF4EBP3_G2251Dfs*164	HLA-B57:01	QSAFLDTW	0.9992	0.9959	0.6212	206	0.3887	1.13	1/888	1/7086
INDEL	Breast	ANKHD1-EIF4EBP3_G2251Dfs*164	HLA-B27:05	RRGPVLSL	0.9999	0.9078	0.1898	205.4	0.6341	1.13	1/888	1/7086
INDEL	Breast	ANKHD1-EIF4EBP3_G2251Dfs*164	HLA-B57:01	VQSAFLDTW	0.9163	0.9942	0.2543	212.5	0.3966	1.13	1/888	1/7086
INDEL	Breast	ANKHD1-EIF4EBP3_G2251Dfs*164	HLA-C02:02	QAAPHLPLL	0.9889	0.984	0.057	441.2	0.2963	1.13	1/888	1/7086
INDEL	Breast	ANKHD1-EIF4EBP3_G2251Dfs*164	HLA-C02:02	FSCKGQLLL	0.5116	0.9296	0.2978	419.8	0.2791	1.13	1/888	1/7086
INDEL	Breast	ANKHD1-EIF4EBP3_G2251Dfs*164	HLA-B57:01	KAYQVGRNL	0.981	0.9881	0.2428	386.4	0.6159	1.13	1/888	1/7086
INDEL	Breast	ANKHD1-EIF4EBP3_G2251Dfs*164	HLA-B57:01	TVQSAFLDTW	0.9989	0.9894	0.1149	109.9	0.2457	1.13	1/888	1/7086
INDEL	Breast	ANKHD1-EIF4EBP3_G2251Dfs*164	HLA-B27:05	RRGPVLSLPL	0.9998	0.5321	0.5686	30	0.0637	1.13	1/888	1/7086
INDEL	Breast	ANKHD1-EIF4EBP3_G2251Dfs*164	HLA-B57:01	FTVQSAFLDTW	0.9999	0.9906	0.2745	107.5	0.2425	1.13	1/888	1/7086
INDEL	Breast	ANKHD1-EIF4EBP3_G2251Dfs*164	HLA-B57:01	AAPHLPLLLLW	0.9998	0.9287	0.4367	207.1	0.39	1.13	1/888	1/7086
INDEL	Breast	ANKHD1-EIF4EBP3_G2251Dfs*164	HLA-B57:01	QTHPLLPHQRW	0.9999	0.9826	0.1072	78	0.1954	1.13	1/888	1/7086
INDEL	Breast	PRKDC_H3643Tfs*8	HLA-B57:01	KTFWERRF	0.9993	0.9869	0.3787	262.9	0.4632	92.59	1/888	1/7086
INDEL	Breast	ABL1_S1054Wfs*12	HLA-B07:02	RPAKTSTRSA	0.9961	0.5255	0.6556	28.7	0.1044	62.45	1/888	1/7086
INDEL	Breast	MLLT6_S204Rfs*42	HLA-A68:01	HAAGEAPHPPR	0.9989	0.876	0.4183	181.2	1.2917	14.47	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-B27:05	RRVSDFLPR	0.9993	0.7099	0.4883	25.8	0.0518	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-C03:03	SSSSFRANL	0.9989	0.9545	0.9472	491.5	1.0011	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-A68:01	NLPQPPARR	0.9399	0.7118	0.4986	268.5	1.6173	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-A68:01	ETQEPKASR	0.9982	0.5156	0.1285	24.4	0.3064	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-B27:05	RRWACSAAA	0.9982	0.7163	0.8655	12.4	0.0121	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-A68:01	AATAAATPR	0.9841	0.8621	0.4153	60.8	0.6296	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-B27:05	GRLRRSGLR	0.9972	0.7165	0.7058	90.8	0.3002	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-B27:05	RRSGLRGRI	0.998	0.6898	0.7376	116.9	0.3881	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-A68:01	GTAGGWWRR	0.9863	0.7081	0.0686	23.6	0.2966	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-A68:01	WVYKQPAVAR	0.9912	0.8298	0.0618	30.4	0.3695	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-B27:05	ARRVSDFLPR	0.9988	0.6138	0.7494	100.3	0.3348	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-B27:05	RRVSDFLPRC	0.9979	0.6931	0.8629	143.3	0.4709	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-A68:01	ETQEPKASRR	0.9939	0.7049	0.3268	99.1	0.8992	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-B27:05	RRWACSAAAT	0.9881	0.7216	1.2334	40.8	0.1117	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-A68:01	AAATAAATPR	0.9808	0.8977	0.4134	67.2	0.6808	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-B27:05	RRSGLRGRIA	0.9951	0.5888	0.834	453.4	1.1576	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-B27:05	CRWPGTAGGW	0.9949	0.724	0.5941	313.7	0.8797	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-B27:05	RRGAQAAHGL	0.9995	0.7476	0.7514	67.3	0.2237	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-A68:01	WVYKQPAVARR	0.9907	0.8985	0.4916	98.5	0.8962	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-B27:05	RRVSDFLPRCL	1	0.6279	0.2253	85.8	0.2851	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-B27:05	FRANLPQPPAR	0.9999	0.7695	0.6891	451.8	1.1545	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-B27:05	RRWACSAAATA	0.9997	0.6976	0.8833	47.4	0.1408	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-A68:01	SAAATAAATPR	0.9952	0.7498	0.3542	97.7	0.8915	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-B27:05	GRLRRSGLRGR	0.9995	0.503	0.367	363.6	0.986	149	1/888	1/7086
INDEL	Breast	HOXB2_G10Wfs*156	HLA-B27:05	WRRGAQAAHGL	0.9987	0.6987	1.0601	399.5	1.0547	149	1/888	1/7086
INDEL	Breast	GALNT7_Q343Hfs*7	HLA-B44:03	YEIIPHTPRGW	0.9986	0.9525	0.0383	68.2	0.081	29.58	1/888	1/7086
INDEL	Breast	KIAA0232_E936Nfs*32	HLA-B15:01	VMGSGQSY	0.9987	0.9169	0.9663	291.3	1.2094	25.49	1/888	1/7086
INDEL	Breast	KIAA0232_E936Nfs*32	HLA-B15:01	IVMGSGQSY	0.9992	0.9011	0.0214	26.3	0.1197	25.49	1/888	1/7086
INDEL	Breast	KIAA0232_E936Nfs*32	HLA-B15:01	SIVMGSGQSY	0.9994	0.9168	0.4183	34.4	0.1659	25.49	1/888	1/7086
INDEL	Breast	KIAA0232_E936Nfs*32	HLA-B15:01	HLVTQKEVCY	0.998	0.7167	0.8951	487.8	1.6695	25.49	1/888	1/7086
INDEL	Breast	SYNJ2_V715Ffs*3	HLA-B15:01	KLCFPMGRNF	0.9957	0.8421	1.566	119.2	0.6062	38.11	1/888	1/7086
INDEL	Breast	DMC1_A76_L80delinsV	HLA-B15:01	KIKEVIEPGF	0.9991	0.8278	0.6467	93.4	0.495	1.14	1/888	1/7086
INDEL	Breast	DMC1_A76_L80delinsV	HLA-B15:01	VIEPGFLTAF	0.9989	0.956	0.8562	486.2	1.666	1.14	1/888	1/7086
INDEL	Breast	TRIM6_F34_P41delinsL	HLA-C03:03	LSIDCGHSL	0.9997	0.9747	0.0861	18.1	0.0759	4.36	1/888	1/7086
INDEL	Breast	TRIM6_F34_P41delinsL	HLA-C03:04	LSIDCGHSL	0.9997	0.9747	0.1072	18.1	0.0759	4.36	1/888	1/7086
INDEL	Breast	PLK2_K513Nfs*18	HLA-C12:03	VSFSTMVL	0.9984	0.9841	0.9014	412.5	1.3659	66.08	1/888	1/7086
INDEL	Breast	PLK2_K513Nfs*18	HLA-C12:03	SVSFSTMVL	0.9851	0.9839	0.678	64.6	0.3054	66.08	1/888	1/7086
INDEL	Breast	TGIF1_L183Rfs*30	HLA-B07:02	TPAAGSSL	0.9991	0.6223	0.1196	39.1	0.1366	32.78	1/888	1/7086
INDEL	Breast	TGIF1_L183Rfs*30	HLA-C12:03	STPAAGSSL	0.904	0.9865	0.0201	189	0.7868	32.78	1/888	1/7086
INDEL	Breast	GPRASP2_N648Kfs*7	HLA-A02:05	SLIETLLKV	0.9993	0.659	0.0002	15.7	0.0832	4.7	1/888	1/7086
INDEL	Breast	GPRASP2_N648Kfs*7	HLA-A02:05	VSLIETLLKV	0.9763	0.7138	1.0547	235.4	1.3824	4.7	1/888	1/7086
INDEL	Breast	C1orf35_R195Gfs*82	HLA-B07:05	TPTPTPPAV	0.9987	0.7388	0.3685	191.1	0.5268	13.1	1/888	1/7086
INDEL	Breast	C1orf35_R195Gfs*82	HLA-C03:04	LAGGMTEAL	0.9992	0.9659	0.4295	85.5	0.3272	13.1	1/888	1/7086
INDEL	Breast	C1orf35_R195Gfs*82	HLA-A31:01	KTKSTGGQLR	0.9922	0.6966	0.3495	35.9	0.2905	13.1	1/888	1/7086
INDEL	Breast	C1orf35_R195Gfs*82	HLA-A31:01	RLAGGMTEALR	0.997	0.6961	0.2636	381.3	1.7899	13.1	1/888	1/7086
INDEL	Breast	ENPP1_I178Pfs*15	HLA-A31:01	TTVLCVKVR	0.9212	0.587	1.0474	398.5	1.8364	31.86	1/888	1/7086
INDEL	Breast	MAP7_L398Qfs*7	HLA-A31:01	KVANEPSQR	0.988	0.5214	0.4382	111.7	0.8202	25.98	1/888	1/7086
INDEL	Breast	TFPI2_C130Vfs*42	HLA-A31:01	LVWASAHQR	0.9638	0.6997	0.2825	21.6	0.1568	181.51	1/888	1/7086
INDEL	Breast	TFPI2_C130Vfs*42	HLA-A31:01	HFATVQKMR	0.9502	0.5064	0.7767	78.5	0.6266	181.51	1/888	1/7086
INDEL	Breast	TFPI2_C130Vfs*42	HLA-A31:01	LLVWASAHQR	0.9222	0.6727	1.7372	109.7	0.8098	181.51	1/888	1/7086
INDEL	Breast	TFPI2_C130Vfs*42	HLA-A31:01	KLLVWASAHQR	0.9742	0.9046	0.6674	66.2	0.5479	181.51	1/888	1/7086
INDEL	Breast	TPM1_S61Lfs*25	HLA-A31:01	RSWSWQRKR	0.9892	0.6094	0.0441	6.1	0.0175	42.68	1/888	1/7086
INDEL	Breast	TPM1_S61Lfs*25	HLA-A31:01	KMPRRSWSWQR	0.9807	0.9143	0.6467	8.5	0.0354	42.68	1/888	1/7086
INDEL	Breast	SLC2A10_L157Wfs*88	HLA-C15:05	YALNYAWLV	0.9976	0.9297	0.241	235.9	0.1454	35.3	1/888	1/7086
INDEL	Breast	SLC2A10_L157Wfs*88	HLA-C03:04	YALNYAWLV	0.9237	0.9871	0.6212	160.5	0.4877	35.3	1/888	1/7086
INDEL	Breast	SLC2A10_L157Wfs*88	HLA-C15:05	CSAGPLHLL	0.9994	0.9208	0.4033	218.1	0.1329	35.3	1/888	1/7086
INDEL	Breast	SLC2A10_L157Wfs*88	HLA-C15:05	SASSSSLLV	0.9994	0.8738	0.388	235	0.1448	35.3	1/888	1/7086
INDEL	Breast	SLC2A10_L157Wfs*88	HLA-C03:04	SASSSSLLV	0.9724	0.9889	0.766	213.6	0.5871	35.3	1/888	1/7086
INDEL	Breast	SLC2A10_L157Wfs*88	HLA-C03:04	SSSSLLVQM	0.9991	0.9878	0.555	321.4	0.7529	35.3	1/888	1/7086
INDEL	Breast	SLC2A10_L157Wfs*88	HLA-A31:01	SSSLLVQMR	0.9675	0.6411	0.4438	126.9	0.8961	35.3	1/888	1/7086
INDEL	Breast	SLC2A10_L157Wfs*88	HLA-C15:05	RTSSHSREV	0.9988	0.9403	0.4347	271.3	0.1723	35.3	1/888	1/7086
INDEL	Breast	SLC2A10_L157Wfs*88	HLA-A31:01	EVRPPSWAR	0.8462	0.8555	0.0084	57.2	0.4817	35.3	1/888	1/7086
INDEL	Breast	SLC2A10_L157Wfs*88	HLA-A31:01	SSSSLLVQMR	0.9657	0.6557	0.8607	114.8	0.8369	35.3	1/888	1/7086
INDEL	Breast	SLC2A10_L157Wfs*88	HLA-A31:01	REVRPPSWAR	0.9054	0.8566	0.9152	9.5	0.0451	35.3	1/888	1/7086
INDEL	Breast	NRDE2_F680Lfs*77	HLA-A02:01	FLTLCFLGL	0.9438	0.7462	0.2557	43.6	0.5607	1.73	1/888	1/7086
INDEL	Breast	NRDE2_F680Lfs*77	HLA-A02:01	TLCFLGLAV	0.9663	0.8682	0.4614	121	1.1956	1.73	1/888	1/7086
INDEL	Breast	NRDE2_F680Lfs*77	HLA-A02:01	FLGLAVLAA	0.9846	0.6269	0.4167	56.2	0.6923	1.73	1/888	1/7086
INDEL	Breast	NRDE2_F680Lfs*77	HLA-A02:01	GLAVLAAWI	0.9235	0.7001	0.7014	180.4	1.5437	1.73	1/888	1/7086
INDEL	Breast	NRDE2_F680Lfs*77	HLA-A02:01	VLAAWIGWA	0.9721	0.6414	0.3974	98.7	1.0497	1.73	1/888	1/7086
INDEL	Breast	NRDE2_F680Lfs*77	HLA-A02:01	TLSCLYFQA	0.9442	0.7381	0.3445	58	0.7116	1.73	1/888	1/7086
INDEL	Breast	NRDE2_F680Lfs*77	HLA-A30:01	RSFGACTLK	0.9985	0.9771	0.0282	18.4	0.0725	1.73	1/888	1/7086
INDEL	Breast	NRDE2_F680Lfs*77	HLA-A02:01	VLAAWIGWAI	0.9935	0.5766	0.3542	25.3	0.3463	1.73	1/888	1/7086
INDEL	Breast	NRDE2_F680Lfs*77	HLA-A02:01	GLYDEKPLTFL	0.9992	0.7181	0.0383	29.4	0.3948	1.73	1/888	1/7086
INDEL	Breast	NRDE2_F680Lfs*77	HLA-A30:01	LQRSFGACTLK	0.9865	0.9557	1.4611	221.4	1.0435	1.73	1/888	1/7086
INDEL	Breast	JMJD1C_G2216Efs*8	HLA-A02:01	SLDFETTKL	0.974	0.7791	0.1285	218.1	1.7382	10.64	1/888	1/7086
INDEL	Breast	HPS4_L700_L701insSLTLGECFTAEVPS	HLA-C03:04	FTAEVPSL	1	0.9951	0.1072	303.8	0.7284	7.71	1/888	1/7086
INDEL	Breast	HPS4_L700_L701insSLTLGECFTAEVPS	HLA-C16:01	FTAEVPSL	0.9987	0.9862	0.1242	391.5	1.1449	7.71	1/888	1/7086
INDEL	Breast	HPS4_L700_L701insSLTLGECFTAEVPS	HLA-B15:01	KLSLTLGECF	0.9969	0.972	1.4863	166.4	0.7929	7.71	1/888	1/7086
INDEL	Breast	HPS4_L700_L701insSLTLGECFTAEVPS	HLA-A02:01	TLGECFTAEV	0.9945	0.8225	1.0239	29.8	0.3993	7.71	1/888	1/7086
INDEL	Breast	HPS4_L700_L701insSLTLGECFTAEVPS	HLA-B44:03	AEVPSLKHGV	0.8974	0.7573	0.3268	420.2	0.3848	7.71	1/888	1/7086
INDEL	Breast	KIAA0195_L871Wfs*37	HLA-B35:08	TATSPSHPM	0.9932	0.754	0.348	241.6	0.1689	11.44	1/888	1/7086
INDEL	Breast	WWC3_R894Efs*90	HLA-A02:05	RLLFGVARL	0.975	0.8429	0.1704	357.3	1.9113	10.35	1/888	1/7086
INDEL	Breast	WWC3_R894Efs*90	HLA-A02:05	FADFIVVTA	0.9575	0.7405	0.0875	269.2	1.5405	10.35	1/888	1/7086
INDEL	Breast	WWC3_R894Efs*90	HLA-C02:02	FAISSHAGL	0.924	0.935	0.0523	85.4	0.0314	10.35	1/888	1/7086
INDEL	Breast	WWC3_R894Efs*90	HLA-B50:01	AEGRLLFGVA	0.7168	0.9846	0.0962	130.9	0.0976	10.35	1/888	1/7086
INDEL	Breast	WWC3_R894Efs*90	HLA-A02:05	LLFGVARLSV	0.9956	0.7588	0.3235	258.9	1.4917	10.35	1/888	1/7086
INDEL	Breast	WWC3_R894Efs*90	HLA-A02:05	SMFADFIVVT	0.9823	0.5168	0.3318	208.3	1.2503	10.35	1/888	1/7086
INDEL	Breast	WWC3_R894Efs*90	HLA-A02:05	MFADFIVVTA	0.9476	0.8471	1.3381	331.4	1.8124	10.35	1/888	1/7086
INDEL	Breast	WWC3_R894Efs*90	HLA-A02:05	GLPWLSSWPA	0.9758	0.6221	1.2933	138.9	0.881	10.35	1/888	1/7086
INDEL	Breast	PCDHB6_P191Rfs*5	HLA-B58:01	RSEGRKFRSW	0.993	0.9733	0.3235	117.5	0.5328	4.41	1/888	1/7086
INDEL	Breast	CEP250_M885Nfs*106	HLA-A68:01	DTAADAEGASR	0.9997	0.647	0.4048	210	1.4092	3.24	1/888	1/7086
INDEL	Breast	MTUS1_S1142Tfs*23	HLA-A02:01	YLEQELETA	0.9854	0.7284	0.5399	205.2	1.6735	20.15	1/888	1/7086
INDEL	Breast	ZNF251_P116Qfs*9	HLA-B18:01	EEVKTQNLY	0.9967	0.8164	0.1566	85.8	0.0609	18.66	1/888	1/7086
INDEL	Breast	CCDC82_S247Vfs*48	HLA-B18:01	MEMIILSM	0.9991	0.729	0.5365	23.7	0.0165	10.61	1/888	1/7086
INDEL	Breast	CCDC82_S247Vfs*48	HLA-C16:01	VVVEILRTL	0.9823	0.9854	0.1354	84.4	0.2952	10.61	1/888	1/7086
INDEL	Breast	CCDC82_S247Vfs*48	HLA-C12:03	VVVEILRTL	0.9971	0.9712	0.1072	32.5	0.1332	10.61	1/888	1/7086
INDEL	Breast	CCDC82_S247Vfs*48	HLA-A02:01	NLAQAVMKL	0.9437	0.5321	0.2382	167.1	1.4744	10.61	1/888	1/7086
INDEL	Breast	CCDC82_S247Vfs*48	HLA-C16:01	LAQAVMKLM	0.878	0.9713	0.5706	255.3	0.8236	10.61	1/888	1/7086
INDEL	Breast	CCDC82_S247Vfs*48	HLA-C12:03	LAQAVMKLM	0.98	0.9594	0.6408	152.4	0.6554	10.61	1/888	1/7086
INDEL	Breast	CCDC82_S247Vfs*48	HLA-C16:01	RIIMNLMKM	0.9589	0.9876	1.1763	118.1	0.4011	10.61	1/888	1/7086
INDEL	Breast	CCDC82_S247Vfs*48	HLA-C12:03	RIIMNLMKM	0.8893	0.9929	1.584	223.9	0.8956	10.61	1/888	1/7086
INDEL	Breast	CCDC82_S247Vfs*48	HLA-C16:01	IMNLMKMEM	0.9655	0.9812	0.8378	140.2	0.4798	10.61	1/888	1/7086
INDEL	Breast	CCDC82_S247Vfs*48	HLA-C12:03	IMNLMKMEM	0.9952	0.9942	1.4863	304.4	1.0992	10.61	1/888	1/7086
INDEL	Breast	CCDC82_S247Vfs*48	HLA-C16:01	KMEMIILSM	0.9516	0.9782	1.8202	348.5	1.0489	10.61	1/888	1/7086
INDEL	Breast	ZC3H12C_E16Dfs*19	HLA-B15:01	SQVHVTTSW	0.9899	0.8619	0.0267	113.8	0.584	1.49	1/888	1/7086
INDEL	Breast	CDC42BPB_K912Tfs*42	HLA-C07:01	FRSQKQRII	0.9875	0.6478	0.267	70.5	0.0225	20.66	1/888	1/7086
INDEL	Breast	CDC42BPB_K912Tfs*42	HLA-B15:01	RIIRRNGNF	0.9784	0.8699	1.2592	134.2	0.6729	20.66	1/888	1/7086
INDEL	Breast	CDC42BPB_K912Tfs*42	HLA-B15:01	AQTSRFSGF	0.9975	0.7796	0.0808	26.3	0.1198	20.66	1/888	1/7086
INDEL	Breast	CDC42BPB_K912Tfs*42	HLA-B15:01	TSRFSGFHF	0.9791	0.9759	1.5935	165.7	0.7906	20.66	1/888	1/7086
INDEL	Breast	CDC42BPB_K912Tfs*42	HLA-B15:01	LTLESKLTGF	0.9977	0.7454	1.516	332.5	1.3283	20.66	1/888	1/7086
INDEL	Breast	CDC42BPB_K912Tfs*42	HLA-C07:01	SRYWAQTSRF	0.9997	0.6731	0.0255	490.1	0.1672	20.66	1/888	1/7086
INDEL	Breast	CDC42BPB_K912Tfs*42	HLA-B15:01	AQTSRFSGFHF	0.9998	0.7925	1.4441	80.7	0.433	20.66	1/888	1/7086
INDEL	Breast	RUNX1_L261Tfs*24	HLA-C03:04	YTWDPLPL	0.9998	0.9955	0.4153	162	0.4903	23.9	1/888	1/7086
INDEL	Breast	RUNX1_L261Tfs*24	HLA-A02:01	YTWDPLPLL	0.9812	0.7016	0.1112	15.5	0.1914	23.9	1/888	1/7086
INDEL	Breast	RUNX1_L261Tfs*24	HLA-C03:04	YTWDPLPLL	0.9993	0.9962	0.2464	51.2	0.2156	23.9	1/888	1/7086
INDEL	Breast	RUNX1_L261Tfs*24	HLA-B15:01	LLCTQQRPF	0.9896	0.7779	0.834	92.9	0.4927	23.9	1/888	1/7086
INDEL	Breast	RUNX1_L261Tfs*24	HLA-A02:01	YTWDPLPLLL	0.9691	0.6912	0.1688	39.7	0.5156	23.9	1/888	1/7086
INDEL	Breast	RUNX1_L261Tfs*24	HLA-C03:04	YTWDPLPLLL	0.9993	0.9959	0.0875	350.1	0.79	23.9	1/888	1/7086
INDEL	Breast	MAP3K4_V471Yfs*8	HLA-B44:03	EEQISDPRY	0.9987	0.9119	0.1746	295.2	0.297	8.43	1/888	1/7086
INDEL	Breast	COX10_P324Sfs*12	HLA-A02:01	ILYSWQFSS	0.964	0.566	1.7612	33.5	0.4457	8.91	1/888	1/7086
INDEL	Breast	COX10_P324Sfs*12	HLA-C07:02	LYSWQFSSF	0.627	0.9237	0.1775	227.9	0.1496	8.91	1/888	1/7086
INDEL	Breast	AGO3_R90Tfs*47	HLA-A31:01	TSCGNYRGR	0.9245	0.6678	0.9889	173.5	1.0906	4.57	1/888	1/7086
INDEL	Breast	AGO3_R90Tfs*47	HLA-A31:01	CGNYRGRFR	0.906	0.5437	1.6762	89	0.6908	4.57	1/888	1/7086
INDEL	Breast	AGO3_R90Tfs*47	HLA-A31:01	GNYRGRFRR	0.9424	0.6203	0.4438	23.5	0.1738	4.57	1/888	1/7086
INDEL	Breast	AGO3_R90Tfs*47	HLA-C07:01	YRGRFRRYF	0.9791	0.5309	0.5144	71.9	0.023	4.57	1/888	1/7086
INDEL	Breast	AGO3_R90Tfs*47	HLA-A31:01	FRRYFTWGR	0.7753	0.6624	1.12	395.2	1.8273	4.57	1/888	1/7086
INDEL	Breast	AGO3_R90Tfs*47	HLA-A31:01	YFTWGRWKR	0.9781	0.5683	0.7945	27	0.2094	4.57	1/888	1/7086
INDEL	Breast	AGO3_R90Tfs*47	HLA-C03:04	STFQGVNQI	0.95	0.9889	0.2039	181	0.5275	4.57	1/888	1/7086
INDEL	Breast	AGO3_R90Tfs*47	HLA-A31:01	STSCGNYRGR	0.959	0.6114	0.7304	131.1	0.9159	4.57	1/888	1/7086
INDEL	Breast	AGO3_R90Tfs*47	HLA-A31:01	RFRRYFTWGR	0.9872	0.6274	0.637	4.7	0.0097	4.57	1/888	1/7086
INDEL	Breast	AGO3_R90Tfs*47	HLA-A31:01	RYFTWGRWKR	0.995	0.5511	0.0618	4.1	0.0088	4.57	1/888	1/7086
INDEL	Breast	BCL9_L863Qfs*43	HLA-C03:04	VSHDAPSPV	0.9691	0.9871	0.6018	44.7	0.193	11.9	1/888	1/7086
INDEL	Breast	ASPRV1_V174_G176del	HLA-C03:04	KAFGAAPSHL	0.9997	0.9964	0.2482	258.9	0.6625	1.67	1/888	1/7086
INDEL	Breast	SARM1_K682Sfs*62	HLA-A31:01	ISGPTNTRR	0.9236	0.6545	0.713	276.5	1.4867	2.01	1/888	1/7086
INDEL	Breast	SARM1_K682Sfs*62	HLA-A31:01	NTRRPPLRR	0.9022	0.6636	0.0835	134.5	0.9318	2.01	1/888	1/7086
INDEL	Breast	SARM1_K682Sfs*62	HLA-C03:04	RAAPPGTHL	0.9992	0.9951	0.0121	8	0.0295	2.01	1/888	1/7086
INDEL	Breast	SARM1_K682Sfs*62	HLA-A31:01	LQALTPVWR	0.9166	0.8363	0.5058	285.8	1.5164	2.01	1/888	1/7086
INDEL	Breast	SARM1_K682Sfs*62	HLA-A31:01	HLQALTPVWR	0.9464	0.9178	0.4769	114.9	0.8373	2.01	1/888	1/7086
INDEL	Breast	ZNF585A_I543Ffs*135	HLA-C03:04	YALSVEEL	1	0.9946	0.3529	289.1	0.707	2.38	1/888	1/7086
INDEL	Breast	ZNF585A_I543Ffs*135	HLA-C07:01	TRNQYSLFI	0.9936	0.6287	0.0762	39.4	0.0114	2.38	1/888	1/7086
INDEL	Breast	ZNF585A_I543Ffs*135	HLA-C03:04	LSSASQTLL	0.999	0.9701	0.7808	96.6	0.3553	2.38	1/888	1/7086
INDEL	Breast	ZNF585A_I543Ffs*135	HLA-C03:04	SSASQTLLL	0.9993	0.963	0.4659	180.8	0.5272	2.38	1/888	1/7086
INDEL	Breast	ZNF585A_I543Ffs*135	HLA-C03:04	SASQTLLLI	0.9887	0.9507	0.2268	189.1	0.5433	2.38	1/888	1/7086
INDEL	Breast	ZNF585A_I543Ffs*135	HLA-C03:04	RSLMNAVTV	0.9112	0.9904	0.6854	148	0.465	2.38	1/888	1/7086
INDEL	Breast	ZNF585A_I543Ffs*135	HLA-C03:04	NAVTVGSPL	0.9989	0.9723	0.167	24.9	0.1092	2.38	1/888	1/7086
INDEL	Breast	ZNF585A_I543Ffs*135	HLA-C03:04	VGSPLPPSL	0.9995	0.9892	0.3866	301.2	0.7248	2.38	1/888	1/7086
INDEL	Breast	ZNF585A_I543Ffs*135	HLA-A31:01	AGQISVSTR	0.7941	0.6136	1.1446	151	1.0029	2.38	1/888	1/7086
INDEL	Breast	ZNF585A_I543Ffs*135	HLA-C03:04	FVLNVGRPF	0.9853	0.9635	0.6352	24	0.1051	2.38	1/888	1/7086
INDEL	Breast	ZNF585A_I543Ffs*135	HLA-A31:01	ATNVGKPSTR	0.9801	0.5589	0.4061	144.4	0.9752	2.38	1/888	1/7086
INDEL	Breast	ZNF585A_I543Ffs*135	HLA-A31:01	KSPTFVLNVGR	0.9828	0.5158	0.7106	76.6	0.6141	2.38	1/888	1/7086
INDEL	Breast	MED12_Q1836Lfs*57	HLA-C03:04	AAHPTNLPW	0.7539	0.9789	0.6891	391.4	0.848	22.61	1/888	1/7086
INDEL	Breast	MED12_Q1836Lfs*57	HLA-C07:01	WRHGFRTLL	0.9956	0.6733	0.2151	16.3	0.0078	22.61	1/888	1/7086
INDEL	Breast	MED12_Q1836Lfs*57	HLA-C07:01	WRHGFRTLLL	0.9981	0.5755	0.3974	66.2	0.0208	22.61	1/888	1/7086
INDEL	Breast	CDK7_K28_V38delinsN	HLA-B13:02	GQFATVYNAI	0.8781	0.7065	0.1963	241.9	0.0162	18.25	1/888	1/7086
INDEL	Breast	GPSM1_A308_R314del	HLA-C05:01	LQDYERHLL	0.9999	0.9796	0.3283	299.6	0.1303	8.97	1/888	1/7086
INDEL	Breast	ST8SIA6_Y86Lfs*65	HLA-A03:01	QIYRVVHGNGK	0.9975	0.5161	1.4943	389.2	1.0212	8.77	1/888	1/7086
INDEL	Breast	RAP1B_G115_E121del	HLA-A03:01	ILVDERVVGK	0.996	0.5174	0.1465	149.4	0.5137	4.04	1/888	1/7086
INDEL	Breast	ITFG3_V160Efs*43	HLA-C05:01	WADPVLSL	1	0.9705	0.2636	256.2	0.1145	27.25	1/888	1/7086
INDEL	Breast	ALYREF_D165dup	HLA-C05:01	KADDALKAM	0.9999	0.9577	0.0979	144.8	0.0747	117.72	1/888	1/7086
INDEL	Breast	DNMBP_T1115_K1123del	HLA-C03:03	LSMFRFDKL	0.9936	0.9706	1.1651	330.5	0.765	6.13	1/888	1/7086
INDEL	Breast	TP53_R110Vfs*13	HLA-A69:01	KTYQGSYGFV	0.8475	0.8519	1.192	356.2	0.9034	13.68	1/888	1/7086
INDEL	Breast	CDH1_P159Lfs*56	HLA-C03:03	KARFSTASL	0.9662	0.9882	0.458	59.9	0.2461	20.18	1/888	1/7086
INDEL	Breast	CDH1_P159Lfs*56	HLA-C03:04	KARFSTASL	0.9662	0.9882	0.5231	59.9	0.2461	20.18	1/888	1/7086
INDEL	Breast	CDH1_P159Lfs*56	HLA-C03:03	LAKELTHPL	0.9994	0.9971	0.1775	27.4	0.1203	20.18	1/888	1/7086
INDEL	Breast	CDH1_P159Lfs*56	HLA-C03:04	LAKELTHPL	0.9994	0.9971	0.2089	27.4	0.1203	20.18	1/888	1/7086
INDEL	Breast	CDH1_P159Lfs*56	HLA-C03:03	LTHPLLVSL	0.9996	0.9636	0.1435	40.5	0.1805	20.18	1/888	1/7086
INDEL	Breast	CDH1_P159Lfs*56	HLA-C03:04	LTHPLLVSL	0.9996	0.9636	0.1734	40.5	0.1805	20.18	1/888	1/7086
INDEL	Breast	GATA3_N331Sfs*20	HLA-A02:01	CLQCLWALL	0.9472	0.8898	1.9543	270.8	1.9932	1380.59	1/888	1/7086
INDEL	Breast	PCID2_F118Lfs*10	HLA-A02:01	ALDLRVLPI	0.9855	0.6876	0.5637	269.6	1.9883	49.34	1/888	1/7086
INDEL	Breast	PCID2_F118Lfs*10	HLA-C03:04	YAVALDLRVL	0.9995	0.9856	0.5868	72.4	0.2889	49.34	2/888	2/7086
INDEL	Breast	PCID2_F118Lfs*10	HLA-C03:04	YAVALDLRVL	0.9995	0.9856	0.5868	72.4	0.2889	49.34	2/888	2/7086
INDEL	Breast	MAP2K4_R373Sfs*29	HLA-A02:01	ILMYEESWI	0.9716	0.5164	0.9275	64.3	0.7757	18.78	1/888	1/7086
INDEL	Breast	MAP2K4_R373Sfs*29	HLA-A02:01	LLPALPCMSI	0.9194	0.6214	0.8492	170.3	1.4901	18.78	1/888	1/7086
INDEL	Breast	MAMLD1_Q321Kfs*59	HLA-C03:04	KAARAHPQL	0.995	0.9829	0.5741	63.1	0.2574	1.55	2/888	2/7086
INDEL	Breast	MAMLD1_Q321Kfs*59	HLA-C03:04	KAARAHPQL	0.995	0.9829	0.5741	63.1	0.2574	1.55	2/888	2/7086
INDEL	Breast	MAMLD1_Q321Kfs*59	HLA-A31:01	QLVWSASSR	0.9237	0.5484	1.0266	334.1	1.6625	1.55	1/888	1/7086
INDEL	Breast	MAMLD1_Q321Kfs*59	HLA-C03:04	ASSRTLSTL	0.9991	0.9929	0.6616	199.1	0.5619	1.55	2/888	2/7086
INDEL	Breast	MAMLD1_Q321Kfs*59	HLA-C03:04	ASSRTLSTL	0.9991	0.9929	0.6616	199.1	0.5619	1.55	2/888	2/7086
INDEL	Breast	MAMLD1_Q321Kfs*59	HLA-C03:04	LSTLPPSAI	0.9881	0.9968	0.6079	101.5	0.3665	1.55	2/888	2/7086
INDEL	Breast	MAMLD1_Q321Kfs*59	HLA-C03:04	LSTLPPSAI	0.9881	0.9968	0.6079	101.5	0.3665	1.55	2/888	2/7086
INDEL	Breast	MAMLD1_Q321Kfs*59	HLA-C03:04	SAITTPTTA	0.9847	0.9822	0.4426	245.7	0.6416	1.55	2/888	2/7086
INDEL	Breast	MAMLD1_Q321Kfs*59	HLA-C03:04	SAITTPTTA	0.9847	0.9822	0.4426	245.7	0.6416	1.55	2/888	2/7086
INDEL	Breast	MAMLD1_Q321Kfs*59	HLA-C03:04	ATATTTTPI	0.9585	0.9879	1.6875	96.6	0.3552	1.55	2/888	2/7086
INDEL	Breast	MAMLD1_Q321Kfs*59	HLA-C03:04	ATATTTTPI	0.9585	0.9879	1.6875	96.6	0.3552	1.55	2/888	2/7086
INDEL	Breast	MAMLD1_Q321Kfs*59	HLA-A31:01	KQGSATKKAAR	0.9855	0.6037	1.5432	234.5	1.3446	1.55	1/888	1/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-B15:03	SSLSHISAL	0.9867	0.8325	0.6594	79.2	1.2207	313.41	2/888	2/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-C02:10	SSLSHISAL	0.9103	0.9804	0.1793	387.3	0.2513	313.41	2/888	2/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-B15:03	SHISALQPL	0.7642	0.89	1.1987	70.9	1.1389	313.41	2/888	2/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-B53:01	APAIQPVLW	0.9721	0.8776	0.0481	63.4	0.0831	313.41	1/888	1/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-A02:01	AIQPVLWTT	0.7836	0.8093	1.192	249.4	1.8972	313.41	3/888	3/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-B15:03	LQHGHRHGL	0.577	0.6899	0.5583	49.3	0.8562	313.41	2/888	2/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-B53:01	DAPAIQPVLW	0.9548	0.7762	0.3736	141.4	0.1649	313.41	1/888	1/7086
INDEL	Breast	NEK1_G486Dfs*22	HLA-C07:01	VRPDFLMGL	0.9948	0.7215	0.0062	263.8	0.0958	2.62	1/888	1/7086
INDEL	Breast	NEK1_G486Dfs*22	HLA-A02:01	FLMGLQVIT	0.983	0.8122	0.5231	23.1	0.3169	2.62	1/888	1/7086
INDEL	Breast	NEK1_G486Dfs*22	HLA-A02:01	FLMGLQVITI	0.9975	0.6444	0.1025	6.8	0.063	2.62	1/888	1/7086
INDEL	Breast	TALDO1_S171del	HLA-A02:01	TLLFFAQAV	0.9746	0.7493	0.2071	15.5	0.1911	94.48	1/888	1/7086
INDEL	Breast	TALDO1_S171del	HLA-A02:01	LLFFAQAVA	0.9507	0.701	1.3768	121	1.1961	94.48	1/888	1/7086
INDEL	Breast	TDRD3_T203Rfs*21	HLA-B27:05	HRGKLLWIM	0.9976	0.8869	0.6352	31.4	0.0681	3.86	1/888	1/7086
INDEL	Breast	TDRD3_T203Rfs*21	HLA-A02:01	KLLWIMATT	0.9368	0.712	0.6692	45.8	0.5842	3.86	1/888	1/7086
INDEL	Breast	PIK3R1_N564_L573del	HLA-B08:01	MRKTRDQYL	0.8849	0.5126	1.3306	155.8	0.2774	78.53	1/888	1/7086
INDEL	Breast	PIK3R1_N564_L573del	HLA-C07:01	MRKTRDQYL	0.9464	0.625	0.5435	83	0.0302	78.53	1/888	1/7086
INDEL	Breast	PPP6R3_T727Sfs*19	HLA-C16:02	WASFSEFSL	0.8273	0.9968	1.4566	494.9	0.5232	49.9	1/888	1/7086
INDEL	Breast	CRTC2_E588Gfs*28	HLA-B44:03	PELDPLFPPW	0.9335	0.9922	1.063	469	0.416	16.2	1/888	1/7086
INDEL	Breast	ANKRD11_A402Sfs*36	HLA-B44:03	REAETLGTY	0.9976	0.974	0.0481	91.5	0.107	9.47	1/888	1/7086
INDEL	Breast	ANKRD11_A402Sfs*36	HLA-B44:03	AETLGTYDI	0.9157	0.9663	0.8247	354.4	0.3423	9.47	1/888	1/7086
INDEL	Breast	ANKRD11_A402Sfs*36	HLA-B44:03	AETLGTYDIAW	0.9993	0.9844	0.1609	66.9	0.079	9.47	1/888	1/7086
INDEL	Breast	ANKRD11_A402Sfs*36	HLA-B44:02	AETLGTYDIAW	0.9994	0.5394	0.1547	36.1	0.0421	9.47	1/888	1/7086
INDEL	Breast	S100P_F89Lfs*43	HLA-C15:02	ITSACHKYL	0.9835	0.8348	0.7151	385	0.4154	48.5	1/888	1/7086
INDEL	Breast	HIVEP2_T2252Nfs*54	HLA-C15:02	LSSMRSEVL	0.9971	0.885	0.5583	430.2	0.4603	8.6	1/888	1/7086
INDEL	Breast	HIVEP2_T2252Nfs*54	HLA-B57:01	SSMRSEVLTL	0.9943	0.952	0.8833	482.2	0.7283	8.6	1/888	1/7086
INDEL	Breast	EGR3_L153Rfs*38	HLA-C15:02	RARLFPPGL	0.9647	0.9602	0.7014	296.3	0.3226	78.43	1/888	1/7086
INDEL	Breast	EGR3_L153Rfs*38	HLA-C15:02	RLFPPGLPI	0.9517	0.9392	0.4789	131.6	0.1358	78.43	1/888	1/7086
INDEL	Breast	TRIM38_P457del	HLA-B15:01	FQVYQYSLF	0.9932	0.8511	0.5924	10.2	0.019	10.42	1/888	1/7086
INDEL	Breast	TRIM38_P457del	HLA-C03:03	QVYQYSLFL	0.9411	0.987	1.0091	175.8	0.5171	10.42	1/888	1/7086
INDEL	Breast	MAP2K7_D93Lfs*9	HLA-C03:03	RSMESIEIL	0.9992	0.9915	0.2102	41.3	0.1828	14.13	1/888	1/7086
INDEL	Breast	MAP2K7_D93Lfs*9	HLA-C02:02	RSMESIEIL	0.872	0.9833	0.2227	325.7	0.1978	14.13	1/888	1/7086
INDEL	Breast	STAU2_Y128Tfs*25	HLA-C07:01	LRSFMFSSL	0.9965	0.7248	0.4475	182.5	0.0696	30.9	1/888	1/7086
INDEL	Breast	STAU2_Y128Tfs*25	HLA-B08:01	FPNYRANTTF	0.9859	0.6323	0.6408	302.4	0.5027	30.9	1/888	1/7086
INDEL	Breast	STAU2_Y128Tfs*25	HLA-B35:01	FPNYRANTTF	0.9982	0.9632	0.2122	6.9	0.0228	30.9	1/888	1/7086
INDEL	Breast	MAP3K1_N325Lfs*3	HLA-C03:03	YLLQQIGPL	0.9545	0.9937	1.3768	76	0.3003	27.94	1/888	1/7086
INDEL	Breast	CTPS2_M436Cfs*13	HLA-B35:01	CPSTTLAIW	0.9848	0.8458	0.8833	240.8	0.5596	13.64	1/888	1/7086
INDEL	Breast	MTMR9_K506Lfs*79	HLA-B15:01	FLRWNRSSL	0.9733	0.9673	1.6818	328	1.3165	7.06	1/888	1/7086
INDEL	Breast	MTMR9_K506Lfs*79	HLA-B15:01	HMKKWLTSL	0.9848	0.8857	0.3413	80.7	0.4329	7.06	1/888	1/7086
INDEL	Breast	RBM5_Q563Sfs*6	HLA-C07:02	FKNSFSLSI	0.8825	0.8318	0.9455	479.9	0.3145	26.03	1/888	1/7086
INDEL	Breast	INTS4_A46Sfs*40	HLA-A31:01	LCKSYLPSR	0.8017	0.5295	1.3951	436.1	1.9308	15.7	1/888	1/7086
INDEL	Breast	INTS4_A46Sfs*40	HLA-A02:01	YLPSRCFAI	0.9746	0.5085	0.0962	14.3	0.1757	15.7	1/888	1/7086
INDEL	Breast	INTS4_A46Sfs*40	HLA-A02:01	ILAPVCQEA	0.9946	0.7647	0.051	39.6	0.5155	15.7	1/888	1/7086
INDEL	Breast	INTS4_A46Sfs*40	HLA-C05:01	SQDSLGTLL	0.9996	0.9459	0.2793	183.6	0.0875	15.7	1/888	1/7086
INDEL	Breast	INTS4_A46Sfs*40	HLA-A02:01	YLPSRCFAIL	0.8797	0.5489	0.433	110.3	1.1256	15.7	1/888	1/7086
INDEL	Breast	LRRK2_I1505Rfs*16	HLA-C07:02	SRSEISLLL	0.9886	0.9639	0.0142	65.2	0.0321	3.89	1/888	1/7086
INDEL	Breast	LRRK2_I1505Rfs*16	HLA-A31:01	ALAKLRKTIR	0.9318	0.5717	0.7788	237	1.3544	3.89	1/888	1/7086
INDEL	Breast	BIRC6_N1519Mfs*61	HLA-B08:01	LLRVVSHL	0.9991	0.9322	1.9543	183	0.3242	5.8	1/888	1/7086
INDEL	Breast	BIRC6_N1519Mfs*61	HLA-C16:01	RVVSHLSL	0.9987	0.9911	1.3596	398.8	1.1639	5.8	1/888	1/7086
INDEL	Breast	BIRC6_N1519Mfs*61	HLA-A32:01	KMFITAALV	0.8204	0.9822	0.8931	32.7	0.0588	5.8	1/888	1/7086
INDEL	Breast	BIRC6_N1519Mfs*61	HLA-C16:01	TAALVSSQM	0.8581	0.975	0.2684	135.1	0.4629	5.8	1/888	1/7086
INDEL	Breast	BIRC6_N1519Mfs*61	HLA-A32:01	SQMKLIYQM	0.9856	0.902	0.1704	51.7	0.0916	5.8	1/888	1/7086
INDEL	Breast	BIRC6_N1519Mfs*61	HLA-C16:01	SQMKLIYQM	0.9912	0.9751	0.3199	171	0.5761	5.8	1/888	1/7086
INDEL	Breast	BIRC6_N1519Mfs*61	HLA-C07:01	ERSVVAQLL	0.9971	0.57	0.5245	444.8	0.1521	5.8	1/888	1/7086
INDEL	Breast	BIRC6_N1519Mfs*61	HLA-C07:01	LRVVSHLSL	0.996	0.7501	0.3974	214.5	0.0808	5.8	1/888	1/7086
INDEL	Breast	BIRC6_N1519Mfs*61	HLA-A32:01	VVSHLSLDF	0.897	0.9437	1.7896	399.5	0.6293	5.8	1/888	1/7086
INDEL	Breast	BIRC6_N1519Mfs*61	HLA-A32:01	KLNLCTLLV	0.6393	0.982	0.897	367.9	0.5865	5.8	1/888	1/7086
INDEL	Breast	BIRC6_N1519Mfs*61	HLA-B44:03	LEMSGSSCKM	0.9594	0.9661	1.0394	412.6	0.3803	5.8	1/888	1/7086
INDEL	Breast	BIRC6_N1519Mfs*61	HLA-B44:03	MERSVVAQLL	0.788	0.873	0.8444	188.9	0.2041	5.8	1/888	1/7086
INDEL	Breast	BIRC6_N1519Mfs*61	HLA-A32:01	RVVSHLSLDF	0.9945	0.9134	0.8065	215.5	0.3755	5.8	1/888	1/7086
INDEL	Breast	BIRC6_N1519Mfs*61	HLA-B44:03	LEMSGSSCKMF	0.999	0.9483	0.5637	278.1	0.2829	5.8	1/888	1/7086
INDEL	Breast	BIRC6_N1519Mfs*61	HLA-B44:03	QEMERSVVAQL	0.9995	0.9883	0.2745	270.6	0.2763	5.8	1/888	1/7086
INDEL	Breast	PIK3R1_K567_L570del	HLA-C07:01	KRMNSIIQL	0.9994	0.8148	0.0226	103.5	0.0395	107.81	1/888	1/7086
INDEL	Breast	PIK3R1_K567_L570del	HLA-C16:01	KRMNSIIQL	0.8874	0.9769	1.1027	439.6	1.2589	107.81	1/888	1/7086
INDEL	Breast	ERGIC1_K202Tfs*136	HLA-C16:01	TATRAASSL	0.8799	0.974	0.4902	134.6	0.4612	84.15	1/888	1/7086
INDEL	Breast	ERGIC1_K202Tfs*136	HLA-C16:01	SSPRSVPSL	0.9619	0.9877	0.2428	130.6	0.4472	84.15	1/888	1/7086
INDEL	Breast	ERGIC1_K202Tfs*136	HLA-C16:01	WTHASSQPL	0.7656	0.9779	1.2862	32.7	0.0936	84.15	1/888	1/7086
INDEL	Breast	ERGIC1_K202Tfs*136	HLA-C07:01	RRSSWARCI	0.991	0.6457	0.2428	210.3	0.0795	84.15	1/888	1/7086
INDEL	Breast	HMHA1_P1000Rfs*35	HLA-A32:01	RTWRRARRW	0.989	0.9418	0.2319	46.1	0.0826	8.98	1/888	1/7086
INDEL	Breast	HMHA1_P1000Rfs*35	HLA-B44:03	AEVVVQVRTW	0.9995	0.92	0.0109	14	0.0092	8.98	1/888	1/7086
INDEL	Breast	HMHA1_P1000Rfs*35	HLA-B44:03	AENPELCPTI	0.9858	0.9475	0.4061	217.2	0.23	8.98	1/888	1/7086
INDEL	Breast	AGL_S1266Vfs*24	HLA-B44:03	QEMGLLWKL	0.9935	0.9881	0.1448	20.8	0.0148	100.35	1/888	1/7086
INDEL	Breast	AGL_S1266Vfs*24	HLA-B44:02	QEMGLLWKLW	0.9996	0.5815	0.3529	3.5	0.0043	100.35	1/888	1/7086
INDEL	Breast	AGL_S1266Vfs*24	HLA-B44:03	QEMGLLWKLW	0.9997	0.9769	0.348	4.8	0.0055	100.35	1/888	1/7086
INDEL	Breast	AGL_S1266Vfs*24	HLA-A02:01	WMDKMGEVTEL	0.984	0.6302	1.4943	33.1	0.4409	100.35	1/888	1/7086
INDEL	Breast	TRMT61B_N181Ifs*21	HLA-C06:02	FRLNNFGLLI	0.8606	0.9913	1.4522	105.1	0.0364	9.74	1/888	1/7086
INDEL	Breast	RUNX1_D96Gfs*11	HLA-B08:01	MFQMALWSL	0.5222	0.9715	1.3454	395.7	0.6285	88.41	1/888	1/7086
INDEL	Breast	EWSR1_Q11Kfs*153	HLA-B07:02	QPMGRPPM	0.9996	0.6248	0.5328	34.7	0.1207	68.74	1/888	1/7086
INDEL	Breast	EWSR1_Q11Kfs*153	HLA-B07:02	RPPMQLSL	0.999	0.5356	0.678	62.9	0.2051	68.74	1/888	1/7086
INDEL	Breast	EWSR1_Q11Kfs*153	HLA-C07:02	GRPPMQLLM	0.8915	0.9006	0.2727	138.4	0.0764	68.74	1/888	1/7086
INDEL	Breast	EWSR1_Q11Kfs*153	HLA-C05:01	LMDSLPLVI	0.9999	0.9404	0.1098	18.8	0.0093	68.74	1/888	1/7086
INDEL	Breast	EWSR1_Q11Kfs*153	HLA-B07:02	LPPRHTASL	0.9996	0.5582	0.2793	21.6	0.0762	68.74	1/888	1/7086
INDEL	Breast	EWSR1_Q11Kfs*153	HLA-A03:01	RLRPLQPMGR	0.9949	0.6271	0.0583	90.5	0.3366	68.74	1/888	1/7086
INDEL	Breast	EWSR1_Q11Kfs*153	HLA-B07:02	QPMGRPPMQL	0.999	0.6118	0.276	59.1	0.1956	68.74	1/888	1/7086
INDEL	Breast	EWSR1_Q11Kfs*153	HLA-C05:01	LLMDSLPLVI	0.998	0.9441	1.584	429.4	0.1709	68.74	1/888	1/7086
INDEL	Breast	EWSR1_Q11Kfs*153	HLA-C05:01	LMDSLPLVIL	0.9999	0.9526	0.4409	207.3	0.0952	68.74	1/888	1/7086
INDEL	Breast	EWSR1_Q11Kfs*153	HLA-B07:02	PPRPPMQLSL	0.9916	0.5229	0.4737	228.2	0.5139	68.74	1/888	1/7086
INDEL	Breast	EWSR1_Q11Kfs*153	HLA-B07:02	RPPMQLSLHM	0.9946	0.5002	0.7286	16.9	0.0573	68.74	1/888	1/7086
INDEL	Breast	EWSR1_Q11Kfs*153	HLA-C07:02	RRMETSPLRL	0.9951	0.9595	0.1098	482.8	0.3167	68.74	1/888	1/7086
INDEL	Breast	EWSR1_Q11Kfs*153	HLA-B07:02	RPPRHMGNKAM	0.9998	0.525	0.4529	23	0.0818	68.74	1/888	1/7086
INDEL	Breast	EWSR1_Q11Kfs*153	HLA-B07:02	RPLQPMGRPPM	0.9999	0.7419	0.0932	11.4	0.031	68.74	1/888	1/7086
INDEL	Breast	EWSR1_Q11Kfs*153	HLA-B07:02	QPMGRPPMQLL	0.9997	0.6054	0.3866	274.7	0.5842	68.74	1/888	1/7086
INDEL	Breast	CA11_G93Efs*38	HLA-B35:01	TPTCGQCVW	0.925	0.8757	1.3629	429.3	0.7994	1.25	1/888	1/7086
INDEL	Breast	ARHGAP29_K343Vfs*44	HLA-A31:01	AVFHVSCRR	0.9911	0.5973	0.1977	17.1	0.116	12.71	1/888	1/7086
INDEL	Breast	ARHGAP29_K343Vfs*44	HLA-A31:01	RGASVFKWR	0.9789	0.5106	0.1821	17.7	0.1213	12.71	1/888	1/7086
INDEL	Breast	ARHGAP29_K343Vfs*44	HLA-A03:01	KVGRGGSPK	0.9968	0.742	0.5279	46.4	0.1731	12.71	1/888	1/7086
INDEL	Breast	ARHGAP29_K343Vfs*44	HLA-A31:01	RGGSPKSRR	0.8108	0.6558	1.0366	249.2	1.4006	12.71	1/888	1/7086
INDEL	Breast	ARHGAP29_K343Vfs*44	HLA-A31:01	KAVFHVSCRR	0.9853	0.5641	0.5619	22.8	0.1674	12.71	1/888	1/7086
INDEL	Breast	ARHGAP29_K343Vfs*44	HLA-A31:01	ISKKSQQATR	0.9077	0.5725	1.6226	147.6	0.9887	12.71	1/888	1/7086
INDEL	Breast	ARHGAP29_K343Vfs*44	HLA-A31:01	RISKKSQQATR	0.9662	0.6278	0.9336	143.2	0.9701	12.71	1/888	1/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-A31:01	IFRPISGR	0.9933	0.6693	1.0978	200	1.207	14.15	1/888	1/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-B07:02	RPISGRPV	0.9997	0.5826	0.3769	17.3	0.0592	14.15	3/888	4/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-B07:02	RPISGRPV	0.9997	0.5826	0.3769	17.3	0.0592	14.15	3/888	4/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-B07:02	RPPMSVLSV	0.996	0.5742	0.2856	67.4	0.2179	14.15	3/888	4/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-B07:02	RPPMSVLSV	0.996	0.5742	0.2856	67.4	0.2179	14.15	3/888	4/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-A31:01	ATSCKPIFR	0.9869	0.5885	0.0187	19	0.1335	14.15	1/888	1/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-A31:01	PIFRPISGR	0.8444	0.8963	0.6314	410.6	1.8682	14.15	1/888	1/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-C07:02	FRPISGRPV	0.6495	0.9524	0.5454	335.7	0.2225	14.15	3/888	5/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-C07:02	FRPISGRPV	0.6495	0.9524	0.5454	335.7	0.2225	14.15	3/888	5/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-B07:02	RPISGRPVC	0.9961	0.6689	0.1886	37.9	0.1311	14.15	3/888	4/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-B07:02	RPISGRPVC	0.9961	0.6689	0.1886	37.9	0.1311	14.15	3/888	4/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-A31:01	GATSCKPIFR	0.9634	0.5862	0.5904	110.2	0.8125	14.15	1/888	1/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-B07:02	RPISGRPVCT	0.983	0.6161	0.2335	171.6	0.4264	14.15	3/888	4/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-B07:02	RPISGRPVCT	0.983	0.6161	0.2335	171.6	0.4264	14.15	3/888	4/7086
INDEL	Breast	DCTN1_S919Afs*25	HLA-B07:02	RPPASLHRL	0.9976	0.6476	0.2165	64.3	0.2094	25.01	2/888	2/7086
INDEL	Breast	DCTN1_S919Afs*25	HLA-B07:02	RPPASLHRL	0.9976	0.6476	0.2165	64.3	0.2094	25.01	2/888	2/7086
INDEL	Breast	DCTN1_S919Afs*25	HLA-A31:01	CGLLPFVQR	0.9221	0.8882	0.5924	106.8	0.7941	25.01	1/888	1/7086
INDEL	Breast	DCTN1_S919Afs*25	HLA-C07:02	HRLNCGLLPF	0.9985	0.9517	0.8228	434	0.2845	25.01	2/888	2/7086
INDEL	Breast	DCTN1_S919Afs*25	HLA-C07:02	HRLNCGLLPF	0.9985	0.9517	0.8228	434	0.2845	25.01	2/888	2/7086
INDEL	Breast	DOCK10_G174Vfs*24	HLA-A31:01	LVFSSPAGSTR	0.9874	0.5264	0.1704	414.2	1.8777	6.14	1/888	1/7086
INDEL	Breast	POLR2B_F1108Rfs*16	HLA-A31:01	AQFLRERLR	0.98	0.5229	0.3736	38.4	0.3137	39.47	1/888	1/7086
INDEL	Breast	POLR2B_F1108Rfs*16	HLA-C07:02	LRHQIHIRF	0.8623	0.8959	0.0861	114.9	0.0621	39.47	2/888	2/7086
INDEL	Breast	POLR2B_F1108Rfs*16	HLA-C07:02	LRHQIHIRF	0.8623	0.8959	0.0861	114.9	0.0621	39.47	2/888	2/7086
INDEL	Breast	POLR2B_F1108Rfs*16	HLA-C07:02	RHQIHIRFM	0.8395	0.879	0.4167	285.1	0.1875	39.47	2/888	2/7086
INDEL	Breast	POLR2B_F1108Rfs*16	HLA-C07:02	RHQIHIRFM	0.8395	0.879	0.4167	285.1	0.1875	39.47	2/888	2/7086
INDEL	Breast	POLR2B_F1108Rfs*16	HLA-A31:01	AAQFLRERLR	0.9534	0.6891	1.5578	51.4	0.4287	39.47	1/888	1/7086
INDEL	Breast	POLR2B_F1108Rfs*16	HLA-C07:02	LRHQIHIRFM	0.9622	0.8922	1.0474	437.6	0.2866	39.47	2/888	2/7086
INDEL	Breast	POLR2B_F1108Rfs*16	HLA-C07:02	LRHQIHIRFM	0.9622	0.8922	1.0474	437.6	0.2866	39.47	2/888	2/7086
INDEL	Breast	MATR3_C296Wfs*118	HLA-C07:02	IRSGVNISM	0.9069	0.8438	0.0734	180.3	0.1142	1.53	2/888	2/7086
INDEL	Breast	MATR3_C296Wfs*118	HLA-C07:02	IRSGVNISM	0.9069	0.8438	0.0734	180.3	0.1142	1.53	2/888	2/7086
INDEL	Breast	MATR3_C296Wfs*118	HLA-A03:01	VVDASFFLK	0.9783	0.515	0.0465	71.5	0.2708	1.53	1/888	1/7086
INDEL	Breast	MATR3_C296Wfs*118	HLA-A03:01	TVVDASFFLK	0.9941	0.5109	0.0601	60.2	0.2275	1.53	1/888	1/7086
INDEL	Breast	MATR3_C296Wfs*118	HLA-A03:01	VTVVDASFFLK	0.9723	0.5605	0.7788	350.5	0.9514	1.53	1/888	1/7086
INDEL	Breast	PCDHB9_R478Tfs*63	HLA-B07:02	TPRSPTRCC	0.9906	0.5385	0.6233	296.2	0.6131	1.75	2/888	2/7086
INDEL	Breast	PCDHB9_R478Tfs*63	HLA-B07:02	TPRSPTRCC	0.9906	0.5385	0.6233	296.2	0.6131	1.75	2/888	2/7086
INDEL	Breast	PCDHB9_R478Tfs*63	HLA-B07:02	RPRTHTCPS	0.9977	0.6753	0.7573	20.9	0.0732	1.75	2/888	2/7086
INDEL	Breast	PCDHB9_R478Tfs*63	HLA-B07:02	RPRTHTCPS	0.9977	0.6753	0.7573	20.9	0.0732	1.75	2/888	2/7086
INDEL	Breast	PCDHB9_R478Tfs*63	HLA-A31:01	MATCLPSGR	0.9434	0.562	0.6929	109.3	0.8076	1.75	1/888	1/7086
INDEL	Breast	PCDHB9_R478Tfs*63	HLA-B07:02	APQTAAPRL	0.999	0.6193	0.0214	53	0.1815	1.75	2/888	2/7086
INDEL	Breast	PCDHB9_R478Tfs*63	HLA-B07:02	APQTAAPRL	0.999	0.6193	0.0214	53	0.1815	1.75	2/888	2/7086
INDEL	Breast	PCDHB9_R478Tfs*63	HLA-B07:02	RPRTHTCPSP	0.9923	0.7213	0.9735	322.1	0.646	1.75	2/888	2/7086
INDEL	Breast	PCDHB9_R478Tfs*63	HLA-B07:02	RPRTHTCPSP	0.9923	0.7213	0.9735	322.1	0.646	1.75	2/888	2/7086
INDEL	Breast	PCDHB9_R478Tfs*63	HLA-A31:01	TMATCLPSGR	0.9533	0.543	0.585	126.9	0.8963	1.75	1/888	1/7086
INDEL	Breast	PCDHB9_R478Tfs*63	HLA-A31:01	CLPSGRWTTR	0.9301	0.8382	0.7494	78	0.6234	1.75	1/888	1/7086
INDEL	Breast	PCDHB9_R478Tfs*63	HLA-B07:02	SPPWSPSTRTM	0.9999	0.5527	0.5941	168.1	0.4202	1.75	2/888	2/7086
INDEL	Breast	PCDHB9_R478Tfs*63	HLA-B07:02	SPPWSPSTRTM	0.9999	0.5527	0.5941	168.1	0.4202	1.75	2/888	2/7086
INDEL	Breast	PCDHB9_R478Tfs*63	HLA-A31:01	RTMATCLPSGR	0.9963	0.5788	0.3283	13.7	0.0787	1.75	1/888	1/7086
INDEL	Breast	PCDHB9_R478Tfs*63	HLA-A31:01	SAWAPQTAAPR	0.9905	0.9245	0.1609	177.9	1.1089	1.75	1/888	1/7086
INDEL	Breast	BOP1_H149Pfs*20	HLA-B07:02	RPGWQAHL	0.9984	0.6024	0.7749	279.7	0.591	15.7	2/888	2/7086
INDEL	Breast	BOP1_H149Pfs*20	HLA-B07:02	RPGWQAHL	0.9984	0.6024	0.7749	279.7	0.591	15.7	2/888	2/7086
INDEL	Breast	BOP1_H149Pfs*20	HLA-C07:02	LRPGWQAHL	0.9473	0.9763	0.1025	163	0.0996	15.7	2/888	2/7086
INDEL	Breast	BOP1_H149Pfs*20	HLA-C07:02	LRPGWQAHL	0.9473	0.9763	0.1025	163	0.0996	15.7	2/888	2/7086
INDEL	Breast	KIAA2026_K396Nfs*117	HLA-A31:01	QMYGFINR	0.9974	0.513	1.749	109.2	0.8071	17.08	1/888	1/7086
INDEL	Breast	KIAA2026_K396Nfs*117	HLA-A31:01	LSFLKFLEK	0.9488	0.5296	0.4295	171.4	1.0831	17.08	1/888	1/7086
INDEL	Breast	KIAA2026_K396Nfs*117	HLA-C07:02	KRKFKMLYL	0.8478	0.9479	0.8515	151.6	0.091	17.08	2/888	2/7086
INDEL	Breast	KIAA2026_K396Nfs*117	HLA-C07:02	KRKFKMLYL	0.8478	0.9479	0.8515	151.6	0.091	17.08	2/888	2/7086
INDEL	Breast	KIAA2026_K396Nfs*117	HLA-A31:01	LFLVMIIWR	0.9423	0.5369	1.073	368.3	1.755	17.08	1/888	1/7086
INDEL	Breast	KIAA2026_K396Nfs*117	HLA-C07:02	IFHSSVVQM	0.6192	0.9357	0.0356	201.6	0.1308	17.08	2/888	2/7086
INDEL	Breast	KIAA2026_K396Nfs*117	HLA-C07:02	IFHSSVVQM	0.6192	0.9357	0.0356	201.6	0.1308	17.08	2/888	2/7086
INDEL	Breast	KIAA2026_K396Nfs*117	HLA-C07:02	FHSSVVQMY	0.684	0.9027	0.0226	298.1	0.1963	17.08	2/888	2/7086
INDEL	Breast	KIAA2026_K396Nfs*117	HLA-C07:02	FHSSVVQMY	0.684	0.9027	0.0226	298.1	0.1963	17.08	2/888	2/7086
INDEL	Breast	KIAA2026_K396Nfs*117	HLA-C07:02	YGFINRDPF	0.639	0.7742	0.8149	461	0.2999	17.08	2/888	2/7086
INDEL	Breast	KIAA2026_K396Nfs*117	HLA-C07:02	YGFINRDPF	0.639	0.7742	0.8149	461	0.2999	17.08	2/888	2/7086
INDEL	Breast	KIAA2026_K396Nfs*117	HLA-B07:02	RPQNFQFHPL	0.9927	0.6313	0.2151	7.6	0.0142	17.08	2/888	2/7086
INDEL	Breast	KIAA2026_K396Nfs*117	HLA-B07:02	RPQNFQFHPL	0.9927	0.6313	0.2151	7.6	0.0142	17.08	2/888	2/7086
INDEL	Breast	KIAA2026_K396Nfs*117	HLA-A31:01	KYKEYLGLNWR	0.995	0.7013	0.8655	100.7	0.7601	17.08	1/888	1/7086
INDEL	Breast	GPSM1_L422Pfs*40	HLA-C07:02	WRQPPFRGL	0.7882	0.9766	0.3028	140.9	0.0785	5.97	2/888	2/7086
INDEL	Breast	GPSM1_L422Pfs*40	HLA-C07:02	WRQPPFRGL	0.7882	0.9766	0.3028	140.9	0.0785	5.97	2/888	2/7086
INDEL	Breast	GPSM1_L422Pfs*40	HLA-A31:01	AQQGLATPPR	0.9392	0.8794	0.3837	301.8	1.5694	5.97	1/888	1/7086
INDEL	Breast	KRT75_G531Afs*52	HLA-A31:01	SLSPPHPPAR	0.9831	0.7148	0.4737	168.9	1.0736	1.88	1/888	1/7086
INDEL	Breast	KRT75_G531Afs*52	HLA-A31:01	SSLSPPHPPAR	0.9953	0.7413	0.6429	382.7	1.7935	1.88	1/888	1/7086
INDEL	Breast	ATXN2_R350Efs*13	HLA-C07:02	SYAKEMLLL	0.6557	0.9512	0.2138	277	0.1819	7.12	2/888	2/7086
INDEL	Breast	ATXN2_R350Efs*13	HLA-C07:02	SYAKEMLLL	0.6557	0.9512	0.2138	277	0.1819	7.12	2/888	2/7086
INDEL	Breast	SETD1B_H8Tfs*27	HLA-B07:02	SPRRSPAL	0.9999	0.7048	0.2213	10.3	0.0274	12.44	2/888	20/7086
INDEL	Breast	SETD1B_H8Tfs*27	HLA-B07:02	SPRRSPAL	0.9999	0.7048	0.2213	10.3	0.0274	12.44	2/888	20/7086
INDEL	Breast	SETD1B_H8Tfs*27	HLA-C07:02	LRARGGTTI	0.8592	0.9091	1.1679	496.2	0.3267	12.44	2/888	22/7086
INDEL	Breast	SETD1B_H8Tfs*27	HLA-C07:02	LRARGGTTI	0.8592	0.9091	1.1679	496.2	0.3267	12.44	2/888	22/7086
INDEL	Breast	SETD1B_H8Tfs*27	HLA-A31:01	SSPRRSPALR	0.8475	0.5197	1.1706	96.5	0.736	12.44	1/888	4/7086
INDEL	Breast	SETD1B_H8Tfs*27	HLA-B07:02	SPRRSPALRA	0.9962	0.8039	0.5347	172.9	0.4285	12.44	2/888	20/7086
INDEL	Breast	SETD1B_H8Tfs*27	HLA-B07:02	SPRRSPALRA	0.9962	0.8039	0.5347	172.9	0.4285	12.44	2/888	20/7086
INDEL	Breast	SETD1B_H8Tfs*27	HLA-A31:01	TSSPRRSPALR	0.9768	0.6159	1.3843	369	1.7571	12.44	1/888	4/7086
INDEL	Breast	CDH24_L239Afs*67	HLA-A31:01	HYGDCHAQR	0.9505	0.6524	0.7014	54.3	0.4556	1.81	1/888	1/7086
INDEL	Breast	CDH24_L239Afs*67	HLA-A31:01	QHYGDCHAQR	0.8746	0.5675	1.8985	289	1.5272	1.81	1/888	1/7086
INDEL	Breast	CDH24_L239Afs*67	HLA-A31:01	RQHYGDCHAQR	0.9948	0.5244	0.3941	48.9	0.4043	1.81	1/888	1/7086
INDEL	Breast	PCNX_K567Nfs*42	HLA-C07:02	FVMTKTLVI	0.8587	0.9046	0.8771	434.1	0.2845	21.21	2/888	2/7086
INDEL	Breast	PCNX_K567Nfs*42	HLA-C07:02	FVMTKTLVI	0.8587	0.9046	0.8771	434.1	0.2845	21.21	2/888	2/7086
INDEL	Breast	FLYWCH1_G428Afs*44	HLA-B07:02	RPAWAAAA	0.9989	0.7309	1.0978	49.9	0.1736	10.72	2/888	3/7086
INDEL	Breast	FLYWCH1_G428Afs*44	HLA-B07:02	RPAWAAAA	0.9989	0.7309	1.0978	49.9	0.1736	10.72	2/888	3/7086
INDEL	Breast	FLYWCH1_G428Afs*44	HLA-A31:01	RCIGPAGTR	0.9504	0.8702	1.2968	403.3	1.8492	10.72	1/888	1/7086
INDEL	Breast	FLYWCH1_G428Afs*44	HLA-B07:02	GPAGTRPAW	0.9907	0.7839	0.1317	208.1	0.4835	10.72	2/888	3/7086
INDEL	Breast	FLYWCH1_G428Afs*44	HLA-B07:02	GPAGTRPAW	0.9907	0.7839	0.1317	208.1	0.4835	10.72	2/888	3/7086
INDEL	Breast	FLYWCH1_G428Afs*44	HLA-B07:02	RPAWAAAAA	0.9983	0.7595	0.0932	5.6	0.0096	10.72	2/888	3/7086
INDEL	Breast	FLYWCH1_G428Afs*44	HLA-B07:02	RPAWAAAAA	0.9983	0.7595	0.0932	5.6	0.0096	10.72	2/888	3/7086
INDEL	Breast	FLYWCH1_G428Afs*44	HLA-A31:01	AAAAAPSPR	0.9766	0.7239	0.4475	88.1	0.6856	10.72	1/888	1/7086
INDEL	Breast	FLYWCH1_G428Afs*44	HLA-B07:02	GPAGTRPAWA	0.9837	0.8425	1.8843	199.2	0.4707	10.72	2/888	3/7086
INDEL	Breast	FLYWCH1_G428Afs*44	HLA-B07:02	GPAGTRPAWA	0.9837	0.8425	1.8843	199.2	0.4707	10.72	2/888	3/7086
INDEL	Breast	FLYWCH1_G428Afs*44	HLA-B07:02	RPAWAAAAAP	0.9879	0.8332	1.0955	171.7	0.4266	10.72	2/888	3/7086
INDEL	Breast	FLYWCH1_G428Afs*44	HLA-B07:02	RPAWAAAAAP	0.9879	0.8332	1.0955	171.7	0.4266	10.72	2/888	3/7086
INDEL	Breast	SOX15_P213Lfs*18	HLA-C07:02	YTHYLPLAL	0.9638	0.9632	0.1336	207.3	0.1351	2.63	2/888	2/7086
INDEL	Breast	SOX15_P213Lfs*18	HLA-C07:02	YTHYLPLAL	0.9638	0.9632	0.1336	207.3	0.1351	2.63	2/888	2/7086
INDEL	Breast	SOX15_P213Lfs*18	HLA-C07:02	HYLPLALPL	0.6153	0.9885	0.2712	90.6	0.0493	2.63	2/888	2/7086
INDEL	Breast	SOX15_P213Lfs*18	HLA-C07:02	HYLPLALPL	0.6153	0.9885	0.2712	90.6	0.0493	2.63	2/888	2/7086
INDEL	Breast	TNS4_P363Hfs*14	HLA-B07:02	SPTPWWTYPL	0.996	0.5333	0.9574	17.8	0.0614	166.62	2/888	2/7086
INDEL	Breast	TNS4_P363Hfs*14	HLA-B07:02	SPTPWWTYPL	0.996	0.5333	0.9574	17.8	0.0614	166.62	2/888	2/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-A31:01	GTGGRRMTR	0.9701	0.5214	0.5583	40.8	0.3364	10	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-C07:02	RRTMTTTKM	0.8076	0.8949	0.5264	320.4	0.212	10	2/888	4/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-C07:02	RRTMTTTKM	0.8076	0.8949	0.5264	320.4	0.212	10	2/888	4/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-A31:01	TTKMMMMRR	0.9807	0.5044	0.3753	23.5	0.174	10	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-A31:01	MMMMRRTKR	0.9734	0.6754	0.3332	4.7	0.0096	10	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-A31:01	MMMRRTKRR	0.966	0.7122	0.4491	10	0.052	10	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-A31:01	MMRRTKRRR	0.9058	0.6718	0.9405	30.4	0.2392	10	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-C07:02	RRKRRRMTM	0.8207	0.8802	1.4215	225	0.1476	10	2/888	4/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-C07:02	RRKRRRMTM	0.8207	0.8802	1.4215	225	0.1476	10	2/888	4/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-A31:01	KMMMMRRTKR	0.9863	0.7301	0.4438	7	0.0254	10	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-A31:01	MMMMRRTKRR	0.9633	0.7261	1.0496	11.8	0.0657	10	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-A31:01	MMMRRTKRRR	0.9604	0.7124	0.9103	25.7	0.196	10	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-A31:01	LTKKTCLTPR	0.9621	0.5793	0.4659	17.3	0.118	10	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-A31:01	TSAATKALPR	0.9818	0.524	0.9549	175.1	1.0965	10	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-A31:01	ALPRQTISQR	0.8641	0.8439	0.267	311.8	1.6012	10	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-A31:01	KALPRQTISQR	0.9918	0.9387	0.033	100.6	0.7595	10	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-B07:02	RPIQTPPGTSL	1	0.7176	0.0618	9.8	0.0253	10	2/888	5/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-B07:02	RPIQTPPGTSL	1	0.7176	0.0618	9.8	0.0253	10	2/888	5/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-B07:02	FPLPRASL	0.9998	0.6841	0.1821	15.2	0.0493	14.98	2/888	8/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-B07:02	FPLPRASL	0.9998	0.6841	0.1821	15.2	0.0493	14.98	2/888	8/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-B07:02	VPRHSSVL	0.9998	0.6236	0.4347	16.3	0.0546	14.98	2/888	8/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-B07:02	VPRHSSVL	0.9998	0.6236	0.4347	16.3	0.0546	14.98	2/888	8/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-A31:01	RGAPRHPHR	0.9864	0.5821	0.4563	22.4	0.1645	14.98	1/888	1/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-B07:02	APRHPHRSP	0.9894	0.5988	0.5435	202.4	0.4753	14.98	2/888	8/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-B07:02	APRHPHRSP	0.9894	0.5988	0.5435	202.4	0.4753	14.98	2/888	8/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-A31:01	LLEAFPLPR	0.9321	0.8437	0.6818	167.1	1.067	14.98	1/888	1/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-B07:02	LPRASLRAT	0.994	0.5455	0.5904	21	0.0735	14.98	2/888	8/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-B07:02	LPRASLRAT	0.994	0.5455	0.5904	21	0.0735	14.98	2/888	8/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-A31:01	ASLRATVPR	0.9912	0.6284	0.0794	17.4	0.1193	14.98	1/888	1/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-A31:01	LATGLHLHR	0.9421	0.7054	0.3717	90.2	0.6971	14.98	1/888	1/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-A31:01	HLWLSHRLR	0.9843	0.6897	0.4529	11.6	0.0641	14.98	1/888	1/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-A31:01	WLSHRLRLR	0.8865	0.6174	0.9432	132.4	0.9222	14.98	1/888	1/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-B07:02	APRHPHRSPP	0.9938	0.5954	0.9129	324	0.6484	14.98	2/888	8/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-B07:02	APRHPHRSPP	0.9938	0.5954	0.9129	324	0.6484	14.98	2/888	8/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-B07:02	HPHRSPPTSC	0.9851	0.5048	0.7304	156.7	0.3996	14.98	2/888	8/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-B07:02	HPHRSPPTSC	0.9851	0.5048	0.7304	156.7	0.3996	14.98	2/888	8/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-A31:01	AFPLPRASLR	0.9811	0.8658	0.6212	54	0.4529	14.98	1/888	1/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-B07:02	LPRASLRATV	0.9958	0.6624	0.3956	11.2	0.0302	14.98	2/888	8/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-B07:02	LPRASLRATV	0.9958	0.6624	0.3956	11.2	0.0302	14.98	2/888	8/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-A31:01	RASLRATVPR	0.9872	0.6261	0.6295	18.5	0.1294	14.98	1/888	1/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-A31:01	VLATGLHLHR	0.9705	0.7015	0.4951	103.2	0.7743	14.98	1/888	1/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-A31:01	LWLSHRLRLR	0.9619	0.6577	1.7372	76.3	0.6123	14.98	1/888	1/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-B07:02	APRHPHRSPPT	0.9998	0.6432	1.0781	433	0.7659	14.98	2/888	8/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-B07:02	APRHPHRSPPT	0.9998	0.6432	1.0781	433	0.7659	14.98	2/888	8/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-A31:01	SVLATGLHLHR	0.984	0.6034	0.267	129.4	0.9081	14.98	1/888	1/7086
INDEL	Breast	NOL4L_Y133Tfs*20	HLA-A31:01	ATIPSRPR	0.9931	0.8024	1.5528	186.2	1.1472	12.64	1/888	3/7086
INDEL	Breast	NOL4L_Y133Tfs*20	HLA-B07:02	RPRSAAAL	0.9999	0.8084	0.0932	3.3	0.0066	12.64	2/888	6/7086
INDEL	Breast	NOL4L_Y133Tfs*20	HLA-B07:02	RPRSAAAL	0.9999	0.8084	0.0932	3.3	0.0066	12.64	2/888	6/7086
INDEL	Breast	NOL4L_Y133Tfs*20	HLA-A31:01	ALGATIPSR	0.942	0.7932	0.3956	217.6	1.2778	12.64	1/888	3/7086
INDEL	Breast	NOL4L_Y133Tfs*20	HLA-A03:01	ALGATIPSR	0.9739	0.5355	0.4456	460.5	1.1443	12.64	2/888	7/7086
INDEL	Breast	NOL4L_Y133Tfs*20	HLA-A31:01	GATIPSRPR	0.9483	0.7935	0.4134	296	1.5506	12.64	1/888	3/7086
INDEL	Breast	NOL4L_Y133Tfs*20	HLA-C07:02	SRPRSAAAL	0.8135	0.9531	0.1212	261.3	0.1713	12.64	2/888	7/7086
INDEL	Breast	NOL4L_Y133Tfs*20	HLA-C07:02	SRPRSAAAL	0.8135	0.9531	0.1212	261.3	0.1713	12.64	2/888	7/7086
INDEL	Breast	NOL4L_Y133Tfs*20	HLA-A31:01	LGATIPSRPR	0.9428	0.825	1.8644	288.2	1.5247	12.64	1/888	3/7086
INDEL	Breast	NOL4L_Y133Tfs*20	HLA-B07:02	RPRSAAALRT	0.994	0.8464	0.9525	108.6	0.3151	12.64	2/888	6/7086
INDEL	Breast	NOL4L_Y133Tfs*20	HLA-B07:02	RPRSAAALRT	0.994	0.8464	0.9525	108.6	0.3151	12.64	2/888	6/7086
INDEL	Breast	NOL4L_Y133Tfs*20	HLA-B07:02	IPSRPRSAAAL	1	0.7136	0.0808	15.6	0.0512	12.64	2/888	6/7086
INDEL	Breast	NOL4L_Y133Tfs*20	HLA-B07:02	IPSRPRSAAAL	1	0.7136	0.0808	15.6	0.0512	12.64	2/888	6/7086
INDEL	Breast	ZDHHC15_E203Dfs*30	HLA-C07:02	SYYPVFAL	0.9723	0.8672	0.3941	327.5	0.2169	2.95	2/888	2/7086
INDEL	Breast	ZDHHC15_E203Dfs*30	HLA-C07:02	SYYPVFAL	0.9723	0.8672	0.3941	327.5	0.2169	2.95	2/888	2/7086
INDEL	Breast	ZDHHC15_E203Dfs*30	HLA-C07:02	WRGDLGSYY	0.7504	0.9614	0.5328	448.8	0.2931	2.95	2/888	2/7086
INDEL	Breast	ZDHHC15_E203Dfs*30	HLA-C07:02	WRGDLGSYY	0.7504	0.9614	0.5328	448.8	0.2931	2.95	2/888	2/7086
INDEL	Breast	ZDHHC15_E203Dfs*30	HLA-C07:02	YYPVFALSSM	0.902	0.8966	0.1641	274.7	0.1803	2.95	2/888	2/7086
INDEL	Breast	ZDHHC15_E203Dfs*30	HLA-C07:02	YYPVFALSSM	0.902	0.8966	0.1641	274.7	0.1803	2.95	2/888	2/7086
INDEL	Breast	DDX26B_N79Kfs*19	HLA-A31:01	SGFWTDYSR	0.9299	0.6776	0.5471	32.1	0.254	10.59	1/888	1/7086
INDEL	Breast	DDX26B_N79Kfs*19	HLA-A31:01	SSGFWTDYSR	0.9352	0.6796	1.1056	29.7	0.2335	10.59	1/888	1/7086
INDEL	Breast	DDX26B_N79Kfs*19	HLA-A31:01	KSSGFWTDYSR	0.9962	0.7125	1.0547	23.5	0.1734	10.59	1/888	1/7086
INDEL	Breast	SP3_T342Lfs*3	HLA-C03:03	SSSSQLPVL	0.9996	0.9822	0.4475	191.5	0.5479	40.86	1/888	1/7086
INDEL	Breast	CLEC16A_E297Rfs*26	HLA-A02:01	KLACRCLFI	0.9776	0.5151	0.451	61.4	0.7467	7.85	1/888	1/7086
INDEL	Breast	KMT2B_P1236Afs*69	HLA-C03:03	APASRHLVL	0.9272	0.984	0.1886	471.2	0.9691	16.13	1/888	1/7086
INDEL	Breast	KMT2B_P1236Afs*69	HLA-C07:01	SRHLVLPSL	0.9993	0.8348	0.2138	94.8	0.0359	16.13	1/888	1/7086
INDEL	Breast	KMT2B_P1236Afs*69	HLA-C03:03	LVLPSLQIL	0.9993	0.9693	0.4614	68	0.2748	16.13	1/888	1/7086
INDEL	Breast	KMT2B_P1236Afs*69	HLA-C03:03	QAPPGVRAL	0.9992	0.9953	0.0226	159.8	0.4866	16.13	1/888	1/7086
INDEL	Breast	KMT2B_P1236Afs*69	HLA-C03:03	HAQTAPLDL	0.9981	0.9832	0.2913	172.3	0.5098	16.13	1/888	1/7086
INDEL	Breast	KMT2B_P1236Afs*69	HLA-B15:01	AQTAPLDLF	0.993	0.9129	0.4311	140.2	0.6974	16.13	1/888	1/7086
INDEL	Breast	KMT2B_P1236Afs*69	HLA-B15:01	IQAPPGVRAL	0.9997	0.8048	0.3445	183.2	0.8548	16.13	1/888	1/7086
INDEL	Breast	KMT2B_P1236Afs*69	HLA-A02:01	ALPPCIPPGL	0.8885	0.7586	0.3736	232.1	1.8051	16.13	1/888	1/7086
INDEL	Breast	HSPA8_L336del	HLA-C03:04	IVVGGSTRI	0.9761	0.9324	1.1738	303.4	0.728	1379.72	1/888	1/7086
INDEL	Breast	HSPA8_L336del	HLA-A30:01	VVGGSTRIPK	0.984	0.7316	0.5094	361.9	1.5702	1379.72	1/888	1/7086
INDEL	Breast	GINS2_E178Vfs*41	HLA-A30:01	RTNLQPLVL	0.9799	0.947	0.0344	290.5	1.3097	9.41	1/888	1/7086
INDEL	Breast	GINS2_E178Vfs*41	HLA-C03:04	RTNLQPLVL	0.9901	0.991	0.0356	284.5	0.7001	9.41	1/888	1/7086
INDEL	Breast	GINS2_E178Vfs*41	HLA-A02:01	NLQPLVLSL	0.9139	0.7485	0.5094	72.4	0.8473	9.41	1/888	1/7086
INDEL	Breast	GATA3_H433Afs*38	HLA-B57:03	SSLSFGPAW	0.9218	0.9979	0.2996	7.4	0.008	979.71	1/888	1/7086
INDEL	Breast	GATA3_H433Afs*38	HLA-B57:03	FGPAWSPPW	0.6576	0.9885	1.2493	156.8	0.3296	979.71	1/888	1/7086
INDEL	Breast	GATA3_H433Afs*38	HLA-B57:03	PSSLSFGPAW	0.8383	0.996	0.9336	86.2	0.1845	979.71	1/888	1/7086
INDEL	Breast	GATA3_H433Afs*38	HLA-B57:03	LSFGPAWSPPW	0.9978	0.997	0.555	16.4	0.0199	979.71	1/888	1/7086
INDEL	Breast	PI4KB_V66Gfs*25	HLA-B44:02	AEAPHWSW	0.9998	0.718	0.0131	30.7	0.033	63.52	1/888	1/7086
INDEL	Breast	PI4KB_V66Gfs*25	HLA-B44:02	AEAPHWSWSM	0.9962	0.6692	0.2122	35.6	0.0415	63.52	1/888	1/7086
INDEL	Breast	PI4KB_V66Gfs*25	HLA-A24:02	HWSWSMGMVW	0.9847	0.8145	0.9472	84.1	0.1828	63.52	1/888	1/7086
INDEL	Breast	FAM53C_W260Ffs*44	HLA-B18:01	LPFEVSATF	0.8998	0.8739	0.5328	453.5	0.2794	20.05	1/888	1/7086
INDEL	Breast	ZNF592_I30Sfs*37	HLA-C07:01	RRMRVPSNL	0.9982	0.6543	0.4183	99.7	0.038	41.6	1/888	1/7086
INDEL	Breast	SZT2_I1989Sfs*58	HLA-B15:01	VVWGTVSPF	0.996	0.9293	0.5213	30.6	0.1416	11.55	1/888	1/7086
INDEL	Breast	SZT2_I1989Sfs*58	HLA-C03:04	VVWGTVSPF	0.962	0.9928	1.2529	107.7	0.3801	11.55	1/888	1/7086
INDEL	Breast	SZT2_I1989Sfs*58	HLA-C03:04	LSGHPGPAL	0.9991	0.9932	0.2122	124.1	0.4156	11.55	1/888	1/7086
INDEL	Breast	SZT2_I1989Sfs*58	HLA-C03:04	GASNKGCVL	0.991	0.9822	0.7081	408.9	0.8718	11.55	1/888	1/7086
INDEL	Breast	SZT2_I1989Sfs*58	HLA-C03:04	LSSAPRDIL	0.9984	0.9793	0.645	362.7	0.8066	11.55	1/888	1/7086
INDEL	Breast	MMRN2_A695_E700del	HLA-A02:01	LLQSLSNDV	0.9274	0.7756	1.0924	270	1.9897	14.06	2/888	2/7086
INDEL	Breast	MMRN2_A695_E700del	HLA-A02:01	LLQSLSNDV	0.9274	0.7756	1.0924	270	1.9897	14.06	2/888	2/7086
INDEL	Breast	MMRN2_A695_E700del	HLA-A02:01	ALLQSLSNDV	0.9726	0.7675	1.3988	54.7	0.678	14.06	2/888	2/7086
INDEL	Breast	MMRN2_A695_E700del	HLA-A02:01	ALLQSLSNDV	0.9726	0.7675	1.3988	54.7	0.678	14.06	2/888	2/7086
INDEL	Breast	EPHA2_G240Vfs*153	HLA-A02:01	WMASGWCPL	0.962	0.5985	0.3698	13.4	0.1628	22.11	1/888	3/7086
INDEL	Breast	EPHA2_G240Vfs*153	HLA-B15:18	LRAPAWSAL	0.8633	0.8242	0.4196	215.4	0.0605	22.11	1/888	1/7086
INDEL	Breast	EPHA2_G240Vfs*153	HLA-A03:01	RVPPPASVRK	0.9988	0.6292	0.2868	140.8	0.4888	22.11	1/888	1/7086
INDEL	Breast	MAP3K6_F849Sfs*143	HLA-A02:01	MLHGPQMPL	0.9664	0.7535	0.3698	55.7	0.6881	17.63	1/888	3/7086
INDEL	Breast	MAP3K6_F849Sfs*143	HLA-B51:09	MPLLPVPLL	0.993	0.517	0.0315	247.7	0.0177	17.63	1/888	1/7086
INDEL	Breast	MAP3K6_F849Sfs*143	HLA-A02:01	MLHGPQMPLL	0.9826	0.5878	0.6594	128.7	1.2453	17.63	1/888	3/7086
INDEL	Breast	PHTF1_L658Yfs*44	HLA-A03:01	CVWPHWGLK	0.9944	0.6497	0.4263	36.2	0.1281	5.2	1/888	1/7086
INDEL	Breast	PHTF1_L658Yfs*44	HLA-A02:01	YLQNRLIYI	0.9955	0.5498	0.0014	4.9	0.0315	5.2	1/888	1/7086
INDEL	Breast	PHTF1_L658Yfs*44	HLA-A02:01	YLQNRLIYIL	0.9908	0.546	0.891	24.1	0.3306	5.2	1/888	1/7086
INDEL	Breast	BCL9_Q1162Rfs*115	HLA-B15:18	QQMQHFASL	0.9763	0.771	0.4153	170.9	0.041	14.5	1/888	1/7086
INDEL	Breast	BCL9_Q1162Rfs*115	HLA-A02:01	SLSWGTACL	0.8708	0.657	0.4456	73	0.8528	14.5	1/888	4/7086
INDEL	Breast	BCL9_Q1162Rfs*115	HLA-A02:01	YLSLIYPAL	0.9844	0.6917	0.0396	9.2	0.1053	14.5	1/888	4/7086
INDEL	Breast	BCL9_Q1162Rfs*115	HLA-A02:01	SLEGKFQAV	0.9611	0.7352	0.2396	133.7	1.2755	14.5	1/888	4/7086
INDEL	Breast	BCL9_Q1162Rfs*115	HLA-A02:01	FQAVNSPRV	0.9877	0.6953	0.0583	47.4	0.6005	14.5	1/888	4/7086
INDEL	Breast	BCL9_Q1162Rfs*115	HLA-A02:01	SLIYPALFHL	0.9794	0.5853	0.3199	13.7	0.1677	14.5	1/888	4/7086
INDEL	Breast	UBXN2A_N70Tfs*21	HLA-C05:01	KTDSPSTTI	1	0.7766	0.0214	23.7	0.011	9.48	1/888	1/7086
INDEL	Breast	UBXN2A_N70Tfs*21	HLA-A02:01	TISEVIPMV	0.9977	0.648	0.0011	16.6	0.2092	9.48	1/888	1/7086
INDEL	Breast	UBXN2A_N70Tfs*21	HLA-A02:01	TTISEVIPMV	0.9932	0.5959	0.651	219.7	1.7461	9.48	1/888	1/7086
INDEL	Breast	MGAT5_F186Lfs*43	HLA-A02:01	STCSFLFTSV	0.9504	0.7702	0.5144	104.3	1.0856	10.93	1/888	1/7086
INDEL	Breast	WIPF1_G133Mfs*109	HLA-A02:01	CLLQATEVV	0.9782	0.6643	0.6556	136.2	1.2908	10.8	1/888	1/7086
INDEL	Breast	WIPF1_G133Mfs*109	HLA-A02:01	IAFLLQYLV	0.8378	0.506	1.7557	166.1	1.4692	10.8	1/888	1/7086
INDEL	Breast	WIPF1_G133Mfs*109	HLA-B51:09	IAFLLQYLV	0.9564	0.5857	1.0655	294.4	0.0214	10.8	1/888	1/7086
INDEL	Breast	WIPF1_G133Mfs*109	HLA-A02:01	VLQDPFNQV	0.9971	0.7596	0.1302	35.1	0.4648	10.8	1/888	1/7086
INDEL	Breast	WIPF1_G133Mfs*109	HLA-A02:01	LLPLSLETA	0.9732	0.6811	0.7304	268.9	1.985	10.8	1/888	1/7086
INDEL	Breast	WIPF1_G133Mfs*109	HLA-A02:01	LLWEEAQYV	0.9988	0.6475	0.0007	3	0.0089	10.8	1/888	1/7086
INDEL	Breast	WIPF1_G133Mfs*109	HLA-A02:01	FLCLLQATEV	0.9935	0.6301	0.6117	20.4	0.2784	10.8	1/888	1/7086
INDEL	Breast	WIPF1_G133Mfs*109	HLA-A02:01	SLIAFLLQYL	0.9858	0.6285	0.2557	17.2	0.2219	10.8	1/888	1/7086
INDEL	Breast	WIPF1_G133Mfs*109	HLA-A02:01	LVLQDPFNQV	0.9778	0.7785	1.1	257.7	1.9356	10.8	1/888	1/7086
INDEL	Breast	WIPF1_G133Mfs*109	HLA-A02:01	ALLWEEAQYV	0.9975	0.5371	0.1872	10.4	0.1227	10.8	1/888	1/7086
INDEL	Breast	WIPF1_G133Mfs*109	HLA-A02:01	YLVLQDPFNQV	0.9954	0.8792	1.1277	52	0.6513	10.8	1/888	1/7086
INDEL	Breast	WIPF1_P131Qfs*109	HLA-A02:01	CLLQATEVV	0.9782	0.6643	0.6556	136.2	1.2908	10.8	1/888	1/7086
INDEL	Breast	WIPF1_P131Qfs*109	HLA-A02:01	IAFLLQYLV	0.8378	0.506	1.7557	166.1	1.4692	10.8	1/888	1/7086
INDEL	Breast	WIPF1_P131Qfs*109	HLA-B51:09	IAFLLQYLV	0.9564	0.5857	1.0655	294.4	0.0214	10.8	1/888	1/7086
INDEL	Breast	WIPF1_P131Qfs*109	HLA-A02:01	VLQDPFNQV	0.9971	0.7596	0.1302	35.1	0.4648	10.8	1/888	1/7086
INDEL	Breast	WIPF1_P131Qfs*109	HLA-A02:01	LLPLSLETA	0.9732	0.6811	0.7304	268.9	1.985	10.8	1/888	1/7086
INDEL	Breast	WIPF1_P131Qfs*109	HLA-A02:01	LLWEEAQYV	0.9988	0.6475	0.0007	3	0.0089	10.8	1/888	1/7086
INDEL	Breast	WIPF1_P131Qfs*109	HLA-A02:01	FLCLLQATEV	0.9935	0.6301	0.6117	20.4	0.2784	10.8	1/888	1/7086
INDEL	Breast	WIPF1_P131Qfs*109	HLA-A02:01	SLIAFLLQYL	0.9858	0.6285	0.2557	17.2	0.2219	10.8	1/888	1/7086
INDEL	Breast	WIPF1_P131Qfs*109	HLA-A02:01	LVLQDPFNQV	0.9778	0.7785	1.1	257.7	1.9356	10.8	1/888	1/7086
INDEL	Breast	WIPF1_P131Qfs*109	HLA-A02:01	ALLWEEAQYV	0.9975	0.5371	0.1872	10.4	0.1227	10.8	1/888	1/7086
INDEL	Breast	WIPF1_P131Qfs*109	HLA-A02:01	YLVLQDPFNQV	0.9954	0.8792	1.1277	52	0.6513	10.8	1/888	1/7086
INDEL	Breast	RNF13_T277Pfs*29	HLA-A02:01	FLLKAIQTL	0.994	0.73	0.0096	5.2	0.0375	44.34	1/888	1/7086
INDEL	Breast	RNF13_T277Pfs*29	HLA-A02:01	FLLKAIQTLT	0.9499	0.7315	1.5295	89.4	0.9846	44.34	1/888	1/7086
INDEL	Breast	AREG_N133Mfs*30	HLA-B15:18	MQNFKISAF	0.9829	0.6862	0.057	41.6	0.0097	2.99	1/888	1/7086
INDEL	Breast	CAMK2D_A24Gfs*30	HLA-A02:01	KMYENSYWTRI	0.9847	0.5005	0.5419	98.5	1.0484	13.08	1/888	1/7086
INDEL	Breast	FAM160A1_E290del	HLA-A02:01	SLFCNAVIQV	0.9976	0.6885	0.281	17.1	0.2215	2.82	1/888	1/7086
INDEL	Breast	PDCD6_R74Lfs*7	HLA-A02:01	SMFDLRTRPA	0.9742	0.6057	0.5657	109.9	1.1228	18.58	1/888	1/7086
INDEL	Breast	MYO10_G1223Rfs*28	HLA-A02:01	LLHAVQEKL	0.9771	0.6317	0.2996	238.6	1.8405	10.79	1/888	1/7086
INDEL	Breast	MYO10_G1223Rfs*28	HLA-A02:01	GLLHAVQEKL	0.9247	0.5605	0.8208	232	1.8047	10.79	1/888	1/7086
INDEL	Breast	CENPH_N115Tfs*16	HLA-A02:01	KLADSLVCSWI	0.9812	0.6396	1.7372	90.6	0.9934	9.49	1/888	4/7086
INDEL	Breast	SERINC5_F69Lfs*40	HLA-A02:01	KMKEHIPFL	0.977	0.6769	0.0154	8.5	0.0933	5.72	1/888	1/7086
INDEL	Breast	SERINC5_F69Lfs*40	HLA-A02:01	VLEWLVSSL	0.9517	0.75	0.8991	232.6	1.8078	5.72	1/888	1/7086
INDEL	Breast	SERINC5_F69Lfs*40	HLA-A02:01	WLVSSLSSV	0.9931	0.6284	0.1596	6.2	0.0528	5.72	1/888	1/7086
INDEL	Breast	SERINC5_F69Lfs*40	HLA-A02:01	SVLEWLVSSL	0.9704	0.7041	0.834	92	1.0037	5.72	1/888	1/7086
INDEL	Breast	MSH3_K383Rfs*32	HLA-A02:01	ALWECSLPQA	0.9945	0.569	0.251	14.4	0.1763	5.25	1/888	4/7086
INDEL	Breast	MICALL2_G429Rfs*61	HLA-B15:18	WRSGAWQAL	0.8404	0.9139	1.6082	218.6	0.0616	2.76	1/888	1/7086
INDEL	Breast	HOXA5_S109Rfs*14	HLA-A03:01	AATATTAGK	0.9602	0.6341	0.6488	325.9	0.9037	2.14	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-B51:09	SPFGHFWVI	0.9662	0.7239	0.0214	84	0.0089	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-A02:01	ILHRLSQLL	0.9482	0.5836	1.182	179.9	1.541	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-A02:01	ALSHLPTPL	0.9892	0.7871	0.2428	64.1	0.7737	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-A02:01	VLTCWLTSV	0.9926	0.7217	0.1566	8	0.084	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-A02:01	WLTSVETPL	0.9752	0.7589	0.4548	29.1	0.3914	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-A02:01	LLHPRWHQL	0.9334	0.5681	0.4491	182.8	1.5562	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-B15:18	WHQLLLHSL	0.7724	0.577	0.6314	444.6	0.1479	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-A02:01	QLLLHSLPL	0.9271	0.6178	0.7514	83.2	0.9346	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-A02:01	LLHSLPLGA	0.9785	0.8026	0.3398	219.3	1.7443	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-B51:09	LPTLMPLAV	0.9952	0.8639	0.024	321.9	0.0237	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-A02:01	LMPLAVAPA	0.9766	0.6203	0.5094	83	0.9333	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-B51:09	MPLAVAPAL	0.976	0.9033	0.0073	225.1	0.0159	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-A02:01	ALLCLEASL	0.9801	0.6301	0.5128	30.8	0.4122	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-A02:01	CLEASLQLV	0.9787	0.8096	1.0601	248.5	1.8926	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-B51:09	VPLPWHPPV	0.9975	0.9071	0.2165	371.5	0.029	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-A02:01	FLAASSGWL	0.9707	0.6482	0.3075	21.1	0.2882	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-A02:01	WLTSVETPLL	0.9738	0.7249	1.4611	61.1	0.7435	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-A02:01	LLLHSLPLGA	0.9815	0.7467	0.786	69.2	0.8207	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-A02:01	ALPTLMPLAV	0.9784	0.5977	0.2138	60.2	0.735	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-A02:01	TLMPLAVAPA	0.994	0.6884	0.451	30.1	0.4036	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-A02:01	LMPLAVAPAL	0.909	0.6838	1.1952	78.9	0.8984	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-B51:09	MPLAVAPALL	0.97	0.8103	0.2699	386.7	0.0308	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-A02:01	LLCLEASLQL	0.9706	0.6639	1.5203	37.7	0.4928	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-A02:01	FLAASSGWLA	0.994	0.5223	0.3898	15.2	0.1881	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-A02:01	TLMPLAVAPAL	0.9851	0.6926	0.8538	97.7	1.0429	3.47	1/888	1/7086
INDEL	Breast	AGFG2_P148Qfs*249	HLA-A02:01	ALLCLEASLQL	0.9795	0.6159	1.6327	101.6	1.0685	3.47	1/888	1/7086
INDEL	Breast	CEP41_N216Mfs*39	HLA-A02:01	MTMMKGWPV	0.97	0.5246	0.7881	7.7	0.0785	2.09	1/888	1/7086
INDEL	Breast	CEP41_N216Mfs*39	HLA-A02:01	KTSSCFPEV	0.9641	0.6467	0.3152	185.4	1.5696	2.09	1/888	1/7086
INDEL	Breast	CEP41_N216Mfs*39	HLA-B15:18	YKMPMARSSF	0.9398	0.6594	0.719	183	0.0465	2.09	1/888	1/7086
INDEL	Breast	ALDH1A1_F152Lfs*29	HLA-A02:01	FLHIQDMNL	0.9854	0.5434	0.1527	31.8	0.4251	6.83	1/888	1/7086
INDEL	Breast	ABCA1_K1154Rfs*23	HLA-A02:01	LMLAWAATM	0.9222	0.6193	0.6837	43.1	0.5559	2.45	1/888	1/7086
INDEL	Breast	ABCA1_K1154Rfs*23	HLA-A03:01	MLAWAATMR	0.9734	0.6362	1.3843	198.3	0.6397	2.45	1/888	1/7086
INDEL	Breast	ABCA1_K1154Rfs*23	HLA-A02:01	LAWAATMRV	0.8081	0.8604	0.8361	160.3	1.4397	2.45	1/888	1/7086
INDEL	Breast	ABCA1_K1154Rfs*23	HLA-A03:01	LMLAWAATMR	0.9407	0.5333	1.8911	378.6	1.0021	2.45	1/888	1/7086
INDEL	Breast	ABCA1_K1154Rfs*23	HLA-A02:01	MLAWAATMRV	0.9938	0.767	0.4675	9.3	0.1077	2.45	1/888	1/7086
INDEL	Breast	POLR3A_G672Dfs*39	HLA-A02:01	WLLSTCLTV	0.9926	0.5488	0.2039	9.8	0.1144	4.61	1/888	1/7086
INDEL	Breast	POLR3A_G672Dfs*39	HLA-A02:01	LLSTCLTVV	0.9907	0.6848	0.2039	13.6	0.1659	4.61	1/888	1/7086
INDEL	Breast	POLR3A_G672Dfs*39	HLA-A02:01	WLLSTCLTVV	0.9955	0.5457	0.3283	22.2	0.3044	4.61	1/888	1/7086
INDEL	Breast	SPI1_P15Lfs*171	HLA-B15:18	LHQKTWCPM	0.6881	0.6306	1.6327	127.5	0.0278	21.39	1/888	1/7086
INDEL	Breast	SPI1_P15Lfs*171	HLA-A02:01	KMEGFPLVPL	0.9692	0.6517	1.0496	99.7	1.0564	21.39	1/888	1/7086
INDEL	Breast	SORL1_M1581Cfs*34	HLA-A02:01	YIMSTTGWL	0.9593	0.6641	0.3089	55.4	0.6849	2.82	1/888	6/7086
INDEL	Breast	KMT2D_A2112Hfs*32	HLA-A02:01	LLPPPFSLA	0.9801	0.7283	0.2543	95.9	1.0311	5.61	1/888	1/7086
INDEL	Breast	KMT2D_A2112Hfs*32	HLA-A02:01	SLAAPLPPPA	0.9765	0.6948	0.7304	118.1	1.1773	5.61	1/888	1/7086
INDEL	Breast	VPS33A_G459Afs*86	HLA-C05:01	YASGWMMLM	0.9575	0.9426	0.3639	456.8	0.1791	5.58	1/888	1/7086
INDEL	Breast	VPS33A_G459Afs*86	HLA-A02:01	MLMSKTPRT	0.9445	0.5037	0.5886	119.2	1.1848	5.58	1/888	5/7086
INDEL	Breast	CHD8_G1349Vfs*35	HLA-A02:01	FLWMTPTFG	0.8939	0.5806	1.8843	127.6	1.2385	10.43	1/888	1/7086
INDEL	Breast	CHD8_G1349Vfs*35	HLA-A03:01	MTPTFGKSGPK	0.9918	0.5811	0.8043	100.6	0.3667	10.43	1/888	1/7086
INDEL	Breast	FAM161B_N159Tfs*29	HLA-C05:01	ESDETSLKM	0.9999	0.897	0.3398	422.5	0.1688	2.17	1/888	1/7086
INDEL	Breast	BUB1B_D989Mfs*13	HLA-A02:01	KMVNCGINSL	0.9614	0.5775	0.5279	143.1	1.3359	11.32	1/888	1/7086
INDEL	Breast	MAP1A_T28Hfs*40	HLA-A02:01	ALQALLLHL	0.9896	0.616	0.0539	32	0.4272	2.47	1/888	1/7086
INDEL	Breast	MAP1A_T28Hfs*40	HLA-A02:01	HLPRWSWGL	0.9019	0.827	0.2089	36.9	0.4839	2.47	1/888	1/7086
INDEL	Breast	MAP1A_T28Hfs*40	HLA-A02:01	FQHPGGWWL	0.9702	0.8358	0.0267	31.9	0.4264	2.47	1/888	1/7086
INDEL	Breast	MPG_R145Pfs*88	HLA-A02:01	ALQWPLQAV	0.9923	0.8193	0.1014	28	0.3788	50.12	1/888	1/7086
INDEL	Breast	MPG_R145Pfs*88	HLA-A02:01	RALQWPLQAV	0.8654	0.7097	0.4646	224.4	1.7685	50.12	1/888	1/7086
INDEL	Breast	TNK1_P449Afs*74	HLA-A02:01	FQESGVSSV	0.942	0.7196	0.1947	151.5	1.3911	6.63	1/888	1/7086
INDEL	Breast	TNK1_P449Afs*74	HLA-A03:01	RSSSHRGWFK	0.9947	0.6963	0.1718	35.9	0.1266	6.63	1/888	1/7086
INDEL	Breast	NF1_Y1607Ifs*17	HLA-A02:01	MLHGGSKLV	0.8499	0.667	0.4048	265.3	1.9695	4.48	1/888	1/7086
INDEL	Breast	NF1_Y1607Ifs*17	HLA-A02:01	IMLHGGSKLV	0.7897	0.6205	0.8515	240.1	1.8486	4.48	1/888	1/7086
INDEL	Breast	RNF43_G659Vfs*41	HLA-B51:09	FPITPPVWHI	0.9781	0.7675	0.1704	236.3	0.0168	12.69	1/888	1/7086
INDEL	Breast	USP32_N1418Ifs*28	HLA-A02:01	GLGRYVSWL	0.8753	0.6545	0.8562	195	1.6196	12.71	1/888	1/7086
INDEL	Breast	HGS_A483Gfs*146	HLA-A02:01	RLGGGLPNA	0.9663	0.624	0.3593	66.3	0.7949	27.34	1/888	1/7086
INDEL	Breast	SETBP1_L1035Yfs*26	HLA-A02:01	TLFPVEVTM	0.9661	0.8046	0.0658	118.3	1.1789	2.01	1/888	2/7086
INDEL	Breast	KHSRP_P537Afs*25	HLA-A02:01	GLGQYLPPV	0.9958	0.6398	0.1609	4.2	0.0215	54.1	1/888	1/7086
INDEL	Breast	KHSRP_P537Afs*25	HLA-A02:01	GLGQYLPPVA	0.9576	0.6478	1.4654	183.9	1.5617	54.1	1/888	1/7086
INDEL	Breast	FCGRT_G109Vfs*27	HLA-A02:01	ALGGKVPTL	0.9734	0.6633	0.1435	38.4	0.5001	17.93	1/888	1/7086
INDEL	Breast	FCGRT_G109Vfs*27	HLA-A02:01	TLCRACWAV	0.9377	0.6684	0.3851	33.7	0.4485	17.93	1/888	1/7086
INDEL	Breast	FCGRT_G109Vfs*27	HLA-A03:01	AVNWALTTPR	0.9775	0.5314	0.3152	228.5	0.7071	17.93	1/888	1/7086
INDEL	Breast	SLC23A2_K612Nfs*64	HLA-A03:01	ATTAGVQMK	0.9917	0.6693	0.1855	277.8	0.8034	16.92	1/888	1/7086
INDEL	Breast	SLC23A2_K612Nfs*64	HLA-A03:01	RATTAGVQMK	0.9918	0.617	0.9275	275	0.7976	16.92	1/888	1/7086
INDEL	Breast	PLCB4_E513Nfs*30	HLA-A02:01	LLMTWVTRKL	0.959	0.5418	1.2078	57.4	0.7048	6.66	1/888	1/7086
INDEL	Breast	RALGAPA2_S919Afs*24	HLA-A02:01	IIAGGASLV	0.9775	0.6862	0.6191	214.2	1.719	1.83	2/888	3/7086
INDEL	Breast	NOL4L_Y133Tfs*20	HLA-A03:01	ALGATIPSR	0.9739	0.5355	0.4456	460.5	1.1443	19.17	2/888	7/7086
INDEL	Breast	PCMTD2_F216Lfs*4	HLA-A02:01	KILAVSLLL	0.971	0.6803	0.3124	45.3	0.5788	16.18	1/888	1/7086
INDEL	Breast	EP300_M1470Cfs*26	HLA-A02:01	RLYQSVLSM	0.9794	0.6643	0.2745	154.2	1.4069	11.72	1/888	7/7086
INDEL	Breast	SBF1_G915Afs*47	HLA-A02:01	WLGSRWWSA	0.9605	0.6783	0.6488	18.3	0.244	6.68	1/888	1/7086
INDEL	Breast	ZKSCAN5_I139Lfs*27	HLA-C07:01	RRQQLLPAL	0.9967	0.726	0.3352	272.7	0.0988	7.52	1/888	1/7086
INDEL	Breast	ZKSCAN5_I139Lfs*27	HLA-A02:01	LLPALMCFL	0.9469	0.5623	0.3367	24.6	0.3371	7.52	1/888	1/7086
INDEL	Breast	ZKSCAN5_I139Lfs*27	HLA-A02:01	QLLPALMCFL	0.9671	0.5567	0.7304	31.6	0.422	7.52	1/888	1/7086
INDEL	Breast	NDUFAF1_Y200Rfs*38	HLA-A02:01	RLVPVQYSV	0.9974	0.5092	0.0121	11.8	0.1414	18.21	1/888	1/7086
INDEL	Breast	NDUFAF1_Y200Rfs*38	HLA-B18:01	GEYQGGHRF	0.974	0.9615	0.0096	169.8	0.1058	18.21	1/888	1/7086
INDEL	Breast	NDUFAF1_Y200Rfs*38	HLA-A02:01	FLPEDESDV	0.9586	0.8272	0.6252	53.5	0.6664	18.21	1/888	1/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-B15:01	RTGMTNMKF	0.6907	0.7294	1.1277	305.4	1.2523	5.05	1/888	1/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-A02:01	SMPWKLWTV	0.9832	0.7812	0.0011	4.1	0.0207	5.05	2/888	2/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-A02:01	SMPWKLWTV	0.9832	0.7812	0.0011	4.1	0.0207	5.05	2/888	2/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-C03:03	MPWKLWTVL	0.9913	0.996	1.3729	361.6	0.8051	5.05	1/888	1/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-B15:01	LIKSIVTSL	0.9916	0.8374	0.3769	282.6	1.1829	5.05	1/888	1/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-C03:03	TSLEEGPAM	0.9976	0.982	0.4113	72.9	0.2906	5.05	1/888	1/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-C03:03	IVLTMSQHL	0.997	0.9733	1.1855	335.6	0.7716	5.05	1/888	1/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-C03:03	LTMSQHLPL	0.9993	0.9854	0.7514	9.6	0.0347	5.05	1/888	1/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-C03:03	MSQHLPLQL	0.9998	0.992	0.0356	82.1	0.3179	5.05	1/888	1/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-C03:03	TVMILPHSL	0.9988	0.9922	0.1746	88.9	0.3361	5.05	1/888	1/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-A02:01	MILPHSLAL	0.9793	0.6157	0.0396	52.6	0.6572	5.05	2/888	2/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-A02:01	MILPHSLAL	0.9793	0.6157	0.0396	52.6	0.6572	5.05	2/888	2/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-B15:01	MILPHSLAL	0.9797	0.9046	0.1435	190.3	0.8796	5.05	1/888	1/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-C03:03	MILPHSLAL	0.9994	0.9861	0.033	7.1	0.0265	5.05	1/888	1/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-C03:03	HSLALPIKM	0.9959	0.9946	0.1014	167.6	0.4999	5.05	1/888	1/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-A02:01	IMSDYLHPM	0.9902	0.5194	0.1242	5.7	0.0454	5.05	2/888	2/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-A02:01	IMSDYLHPM	0.9902	0.5194	0.1242	5.7	0.0454	5.05	2/888	2/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-B15:01	IMSDYLHPM	0.9976	0.8512	0.7573	34.2	0.1642	5.05	1/888	1/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-C03:03	IMSDYLHPM	0.995	0.9889	0.7399	62	0.2535	5.05	1/888	1/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-C03:03	TAWVRGHTV	0.9659	0.9895	0.1581	165.3	0.4959	5.05	1/888	1/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-A02:01	FSMPWKLWTV	0.9924	0.7383	0.0096	4.4	0.0232	5.05	2/888	2/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-A02:01	FSMPWKLWTV	0.9924	0.7383	0.0096	4.4	0.0232	5.05	2/888	2/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-C03:03	FSMPWKLWTV	0.8892	0.9969	0.5419	416.5	0.8817	5.05	1/888	1/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-B15:01	KMGGRIMSDY	0.9976	0.8937	0.7594	91.8	0.4878	5.05	1/888	1/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-A02:01	RIMSDYLHPM	0.9814	0.6516	0.7304	61.1	0.7436	5.05	2/888	2/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-A02:01	RIMSDYLHPM	0.9814	0.6516	0.7304	61.1	0.7436	5.05	2/888	2/7086
INDEL	Breast	HMBOX1_K40Nfs*117	HLA-B15:01	HQLATMQTAW	0.9938	0.9848	1.7204	210.3	0.949	5.05	1/888	1/7086
INDEL	Breast	KMT2C_K4391Nfs*22	HLA-A02:01	KLGTSLNLI	0.9688	0.7968	0.6837	131.2	1.2607	11.45	1/888	1/7086
INDEL	Breast	KMT2C_K4391Nfs*22	HLA-C12:03	KTIGNVAFV	0.8174	0.9654	0.1609	60.2	0.2803	11.45	2/888	2/7086
INDEL	Breast	KMT2C_K4391Nfs*22	HLA-C12:03	KTIGNVAFV	0.8174	0.9654	0.1609	60.2	0.2803	11.45	2/888	2/7086
INDEL	Breast	KMT2C_K4391Nfs*22	HLA-C12:03	VAFVMKKVM	0.8346	0.9871	0.3283	100.4	0.4508	11.45	2/888	2/7086
INDEL	Breast	KMT2C_K4391Nfs*22	HLA-C12:03	VAFVMKKVM	0.8346	0.9871	0.3283	100.4	0.4508	11.45	2/888	2/7086
INDEL	Breast	KMT2C_K4391Nfs*22	HLA-A02:01	KLGTSLNLIL	0.9507	0.8293	1.9682	262.5	1.9571	11.45	1/888	1/7086
INDEL	Breast	L3MBTL4_H561Lfs*18	HLA-C12:03	SALRKSRSM	0.894	0.9871	0.5686	98.6	0.444	2.22	2/888	2/7086
INDEL	Breast	L3MBTL4_H561Lfs*18	HLA-C12:03	SALRKSRSM	0.894	0.9871	0.5686	98.6	0.444	2.22	2/888	2/7086
INDEL	Breast	L3MBTL4_H561Lfs*18	HLA-A02:01	SLLGCEELPSA	0.9985	0.7908	1.0069	51.7	0.6474	2.22	1/888	1/7086
INDEL	Breast	MAP3K1_P233Qfs*30	HLA-C07:02	SRQVRLHQL	0.9598	0.8861	0.0808	204.1	0.1327	13.32	1/888	1/7086
INDEL	Breast	MAP3K1_P233Qfs*30	HLA-A02:01	LLLATPHQV	0.9975	0.5123	0.0255	11.4	0.1355	13.32	1/888	1/7086
INDEL	Breast	MAP3K1_P233Qfs*30	HLA-A02:01	VLLLATPHQV	0.9927	0.5412	0.3837	60.5	0.7378	13.32	1/888	1/7086
INDEL	Breast	INO80_E149Nfs*74	HLA-C07:02	IRNFTKISI	0.9465	0.8304	0.3866	348.2	0.2307	10.16	1/888	1/7086
INDEL	Breast	INO80_E149Nfs*74	HLA-A02:01	SMSNNGTYL	0.8122	0.5469	0.637	252.7	1.9125	10.16	1/888	1/7086
INDEL	Breast	INO80_E149Nfs*74	HLA-C07:02	LRRKRNLKL	0.6585	0.914	1.0863	303.7	0.1999	10.16	1/888	1/7086
INDEL	Breast	COL25A1_P502Tfs*71	HLA-B15:01	WTKGYRWSY	0.9813	0.9018	1.3034	453.5	1.5931	1.34	1/888	1/7086
INDEL	Breast	COL25A1_P502Tfs*71	HLA-A24:02	GYRWSYGTPW	0.9666	0.8816	1.975	324	0.5061	1.34	1/888	1/7086
INDEL	Breast	COL25A1_P502Tfs*71	HLA-A24:02	RFWNAGSTGSF	0.9995	0.6619	0.2197	238	0.4105	1.34	1/888	1/7086
INDEL	Breast	SIN3B_S857Rfs*42	HLA-C03:03	YARCSPSM	0.9988	0.9676	0.9203	448.2	0.9306	14.38	1/888	1/7086
INDEL	Breast	SIN3B_S857Rfs*42	HLA-A24:02	SMPTWASPW	0.9534	0.8304	1.3074	312.8	0.4951	14.38	1/888	1/7086
INDEL	Breast	SIN3B_S857Rfs*42	HLA-A24:02	TWASPWTSW	0.9938	0.7736	0.4048	66.5	0.1469	14.38	1/888	1/7086
INDEL	Breast	CCDC18_E824Nfs*15	HLA-B15:01	KQVSKLNKNF	0.9994	0.7424	0.7058	73.4	0.3935	1.36	1/888	1/7086
INDEL	Breast	MEN1_K567Sfs*24	HLA-B57:01	QSEKMKGMSW	0.9991	0.9949	0.2268	132.2	0.2809	11.47	1/888	1/7086
INDEL	Breast	MEN1_K567Sfs*24	HLA-B57:01	QSEKMKGMSWW	0.9997	0.9955	0.5637	197.7	0.3782	11.47	1/888	1/7086
INDEL	Breast	EPHB3_W98Gfs*8	HLA-B27:05	LRTGFIGAQV	0.9997	0.9268	1.1888	481.2	1.2108	153.2	1/888	1/7086
INDEL	Breast	PIP4K2C_R112Vfs*63	HLA-C03:04	MVASLSPTI	0.9859	0.9852	0.8562	31.4	0.1424	84.83	1/888	1/7086
INDEL	Breast	PIP4K2C_R112Vfs*63	HLA-C03:04	ASLSPTIGL	0.9992	0.9826	0.3657	235.9	0.6253	84.83	1/888	1/7086
INDEL	Breast	PIP4K2C_R112Vfs*63	HLA-C03:04	TSPTITSTL	0.9977	0.9846	0.2557	315.5	0.7449	84.83	1/888	1/7086
INDEL	Breast	PIP4K2C_R112Vfs*63	HLA-B27:05	FRNLVIDLAL	0.9995	0.8915	0.8677	39.6	0.1069	84.83	1/888	1/7086
INDEL	Breast	CYP7B1_F442Lfs*18	HLA-A02:01	KLKCYLMPL	0.9592	0.5763	0.5601	18.7	0.2524	1.98	1/888	1/7086
INDEL	Breast	CYP7B1_F442Lfs*18	HLA-A32:01	KLKCYLMPL	0.9398	0.9766	1.0292	79.7	0.1476	1.98	1/888	1/7086
INDEL	Breast	CYP7B1_F442Lfs*18	HLA-A02:01	YLMPLELEP	0.9358	0.6358	1.1339	178.3	1.5322	1.98	1/888	1/7086
INDEL	Breast	CYP7B1_F442Lfs*18	HLA-A32:01	VQADFLHLW	0.9937	0.9522	0.0142	166.6	0.2968	1.98	1/888	1/7086
INDEL	Breast	CYP7B1_F442Lfs*18	HLA-A02:01	YLMPLELEPA	0.9966	0.5214	0.1641	4.8	0.0297	1.98	1/888	1/7086
INDEL	Breast	TP53_E285Rfs*54	HLA-A02:01	ALSEHCPTT	0.8225	0.6134	0.6911	220.7	1.7511	13.19	1/888	1/7086
INDEL	Breast	TP53_E285Rfs*54	HLA-C07:02	HWMENISPF	0.7218	0.9419	0.5144	334.9	0.2219	13.19	2/888	2/7086
INDEL	Breast	TP53_E285Rfs*54	HLA-C07:02	HWMENISPF	0.7218	0.9419	0.5144	334.9	0.2219	13.19	2/888	2/7086
INDEL	Breast	TP53_E285Rfs*54	HLA-B07:02	SPFRSVGVSA	0.9983	0.5998	0.0214	30.9	0.1109	13.19	2/888	2/7086
INDEL	Breast	TP53_E285Rfs*54	HLA-B07:02	SPFRSVGVSA	0.9983	0.5998	0.0214	30.9	0.1109	13.19	2/888	2/7086
INDEL	Breast	THRA_S38Afs*89	HLA-A32:01	KTACQGISL	0.9716	0.8641	0.6233	207.9	0.3646	7.85	1/888	1/7086
INDEL	Breast	THRA_S38Afs*89	HLA-A32:01	VTWTKTSSV	0.8852	0.8822	1.4566	480.3	0.7353	7.85	1/888	1/7086
INDEL	Breast	THRA_S38Afs*89	HLA-A02:01	RQLVITTAV	0.9149	0.5373	0.0618	178.8	1.5352	7.85	1/888	1/7086
INDEL	Breast	THRA_S38Afs*89	HLA-A32:01	RQLVITTAV	0.6801	0.9341	0.4426	158.6	0.2834	7.85	1/888	1/7086
INDEL	Breast	THRA_S38Afs*89	HLA-B07:02	LVRAARASF	0.9795	0.5328	0.8884	31.6	0.1126	7.85	2/888	2/7086
INDEL	Breast	THRA_S38Afs*89	HLA-B07:02	LVRAARASF	0.9795	0.5328	0.8884	31.6	0.1126	7.85	2/888	2/7086
INDEL	Breast	THRA_S38Afs*89	HLA-A32:01	SASPWAWPW	0.9411	0.987	0.1547	35.3	0.0636	7.85	1/888	1/7086
INDEL	Breast	THRA_S38Afs*89	HLA-A32:01	SPWAWPWTW	0.6134	0.9906	0.3822	329.9	0.538	7.85	1/888	1/7086
INDEL	Breast	THRA_S38Afs*89	HLA-A32:01	RSASPWAWPW	0.991	0.9667	0.2464	22	0.0369	7.85	1/888	1/7086
INDEL	Breast	THRA_S38Afs*89	HLA-A32:01	ASPWAWPWTW	0.8912	0.991	0.8585	64.5	0.1186	7.85	1/888	1/7086
INDEL	Breast	THRA_S38Afs*89	HLA-A32:01	SASPWAWPWTW	0.9551	0.9826	0.2727	459.4	0.7084	7.85	1/888	1/7086
INDEL	Breast	SLC39A11_S153Rfs*66	HLA-A32:01	RVLLSLCLL	0.9538	0.99	0.6949	147.2	0.263	33.57	1/888	1/7086
INDEL	Breast	SLC39A11_S153Rfs*66	HLA-A02:01	CLLEGIWHS	0.9705	0.6176	1.063	19.1	0.2579	33.57	1/888	1/7086
INDEL	Breast	SLC39A11_S153Rfs*66	HLA-A02:01	SLYTTFQRV	0.9951	0.5117	0.0096	33	0.4397	33.57	1/888	1/7086
INDEL	Breast	SLC39A11_S153Rfs*66	HLA-A32:01	TTFQRVSLL	0.9584	0.8625	0.5686	455.5	0.7033	33.57	1/888	1/7086
INDEL	Breast	SLC39A11_S153Rfs*66	HLA-A02:01	SLLELDLGL	0.992	0.5876	0.2335	8.3	0.0893	33.57	1/888	1/7086
INDEL	Breast	SLC39A11_S153Rfs*66	HLA-A02:01	LLSLCLLEGI	0.9613	0.5512	1.0214	76.3	0.8789	33.57	1/888	1/7086
INDEL	Breast	SLC39A11_S153Rfs*66	HLA-A32:01	SSWPSLYTTF	0.9824	0.9502	0.5741	79.4	0.147	33.57	1/888	1/7086
INDEL	Breast	HLA-E_C280_Q283delinsW	HLA-C07:02	QRYTWHEGL	0.8978	0.9665	0.1196	294.3	0.1937	306.53	1/888	1/7086
INDEL	Breast	ACTN4_Q829Kfs*27	HLA-B07:02	RPPTRTRL	0.9996	0.5628	0.6854	48.6	0.1697	181.97	1/888	1/7086
INDEL	Breast	HMCN1_P2133Tfs*22	HLA-C03:03	YLVKRRPPL	0.6732	0.9761	0.9787	172.6	0.5104	1.55	1/888	1/7086
INDEL	Breast	HMCN1_P2133Tfs*22	HLA-B15:01	CQSDAIPPTY	0.9997	0.9391	0.458	56.9	0.2998	1.55	1/888	1/7086
INDEL	Breast	TRPM6_T1474Pfs*77	HLA-B15:01	RSRPRTAPY	0.9993	0.8348	0.557	29.6	0.1372	1	1/888	1/7086
INDEL	Breast	TRPM6_T1474Pfs*77	HLA-B15:01	HGFSQTHPF	0.9909	0.899	0.6891	139.3	0.6937	1	1/888	1/7086
INDEL	Breast	TRPM6_T1474Pfs*77	HLA-C03:03	HGFSQTHPF	0.9945	0.9826	0.8043	212.2	0.5848	1	1/888	1/7086
INDEL	Breast	TRPM6_T1474Pfs*77	HLA-C03:03	QTHPFGSIL	0.9965	0.9788	0.2684	99.5	0.362	1	1/888	1/7086
INDEL	Breast	TRPM6_T1474Pfs*77	HLA-C03:03	LSADTGPSL	0.9996	0.9921	0.184	10.5	0.0374	1	1/888	1/7086
INDEL	Breast	MICU1_E241Kfs*47	HLA-B15:01	NLNRFRASF	0.962	0.7669	0.766	170.7	0.8086	20.06	1/888	1/7086
INDEL	Breast	MICU1_E241Kfs*47	HLA-C03:03	RASFAPKPV	0.8121	0.992	1.0807	187.2	0.5397	20.06	1/888	1/7086
INDEL	Breast	MICU1_E241Kfs*47	HLA-C03:03	CATEIVQLL	0.9998	0.9714	0.0495	263.8	0.6699	20.06	1/888	1/7086
INDEL	Breast	MICU1_E241Kfs*47	HLA-B15:01	VQLLATPSSL	0.9913	0.8179	1.7146	211.9	0.9546	20.06	1/888	1/7086
INDEL	Breast	PITRM1_E809Nfs*45	HLA-B07:02	FPMAPRSL	0.9997	0.6171	0.2319	7.5	0.014	19.14	2/888	2/7086
INDEL	Breast	PITRM1_E809Nfs*45	HLA-B07:02	FPMAPRSL	0.9997	0.6171	0.2319	7.5	0.014	19.14	2/888	2/7086
INDEL	Breast	PITRM1_E809Nfs*45	HLA-C07:02	SRNLCPAAL	0.8034	0.958	0.4599	132.5	0.0716	19.14	2/888	2/7086
INDEL	Breast	PITRM1_E809Nfs*45	HLA-C07:02	SRNLCPAAL	0.8034	0.958	0.4599	132.5	0.0716	19.14	2/888	2/7086
INDEL	Breast	PITRM1_E809Nfs*45	HLA-C07:02	TFPMAPRSL	0.5596	0.9533	0.0601	369.8	0.2443	19.14	2/888	2/7086
INDEL	Breast	PITRM1_E809Nfs*45	HLA-C07:02	TFPMAPRSL	0.5596	0.9533	0.0601	369.8	0.2443	19.14	2/888	2/7086
INDEL	Breast	PITRM1_E809Nfs*45	HLA-B07:02	RSRNLCPAAL	0.987	0.5115	1.7317	288.1	0.6022	19.14	2/888	2/7086
INDEL	Breast	PITRM1_E809Nfs*45	HLA-B07:02	RSRNLCPAAL	0.987	0.5115	1.7317	288.1	0.6022	19.14	2/888	2/7086
INDEL	Breast	PITRM1_E809Nfs*45	HLA-B07:02	APRSLGSWSW	0.9917	0.7764	0.1354	270.9	0.5789	19.14	2/888	2/7086
INDEL	Breast	PITRM1_E809Nfs*45	HLA-B07:02	APRSLGSWSW	0.9917	0.7764	0.1354	270.9	0.5789	19.14	2/888	2/7086
INDEL	Breast	PITRM1_E809Nfs*45	HLA-B07:02	MPTFPMAPRSL	0.9997	0.588	0.3769	91.7	0.2781	19.14	2/888	2/7086
INDEL	Breast	PITRM1_E809Nfs*45	HLA-B07:02	MPTFPMAPRSL	0.9997	0.588	0.3769	91.7	0.2781	19.14	2/888	2/7086
INDEL	Breast	PITRM1_E809Nfs*45	HLA-B07:02	FPMAPRSLGSW	0.9987	0.5548	0.2653	371.1	0.7017	19.14	2/888	2/7086
INDEL	Breast	PITRM1_E809Nfs*45	HLA-B07:02	FPMAPRSLGSW	0.9987	0.5548	0.2653	371.1	0.7017	19.14	2/888	2/7086
INDEL	Breast	TP53_V147Lfs*23	HLA-B57:01	KTCPVQLWL	0.9892	0.9117	0.0142	127.8	0.2742	17.39	1/888	1/7086
INDEL	Breast	TP53_V147Lfs*23	HLA-A02:01	WLIPHPRPA	0.9784	0.6753	0.2428	110.6	1.1273	17.39	2/888	2/7086
INDEL	Breast	TP53_V147Lfs*23	HLA-A02:01	WLIPHPRPA	0.9784	0.6753	0.2428	110.6	1.1273	17.39	2/888	2/7086
INDEL	Breast	TP53_V147Lfs*23	HLA-B57:01	KTCPVQLWLI	0.9982	0.8334	0.2896	144.2	0.2982	17.39	1/888	1/7086
INDEL	Breast	HAT1_E197Gfs*5	HLA-B35:01	FIDVDDGTTF	0.9833	0.7924	0.2352	390.5	0.7527	20.84	1/888	1/7086
INDEL	Breast	NUDT3_S110Wfs*8	HLA-B44:03	TEVLEDWEDW	0.9961	0.9903	0.4986	98.6	0.1143	6.16	1/888	1/7086
INDEL	Breast	FAM86B1_L169del	HLA-A02:01	VLNGLSLEA	0.9925	0.6127	0.5868	262.2	1.9557	1.08	1/888	1/7086
INDEL	Breast	HPX_L192Tfs*64	HLA-C16:01	VTNSCASTL	0.6865	0.975	0.6173	112.1	0.3842	1.82	1/888	1/7086
INDEL	Breast	HPX_L192Tfs*64	HLA-C03:03	VTNSCASTL	0.9939	0.9298	0.5686	149.3	0.4674	1.82	1/888	1/7086
INDEL	Breast	HPX_L192Tfs*64	HLA-C16:01	EAMDTGMGL	0.6294	0.9704	0.5296	399.9	1.1668	1.82	1/888	1/7086
INDEL	Breast	HPX_L192Tfs*64	HLA-C03:03	EAMDTGMGL	0.9969	0.9868	0.3925	63.3	0.2581	1.82	1/888	1/7086
INDEL	Breast	HPX_L192Tfs*64	HLA-B15:01	LAMGTVPTM	0.9801	0.969	0.3495	168.6	0.8003	1.82	1/888	1/7086
INDEL	Breast	HPX_L192Tfs*64	HLA-C16:01	LAMGTVPTM	0.9835	0.9911	0.1014	8.8	0.0113	1.82	1/888	1/7086
INDEL	Breast	HPX_L192Tfs*64	HLA-C03:03	LAMGTVPTM	0.9997	0.9939	0.0762	3.3	0.0086	1.82	1/888	1/7086
INDEL	Breast	HPX_L192Tfs*64	HLA-C16:01	MGTVPTMAL	0.9323	0.9872	0.2825	25.5	0.0635	1.82	1/888	1/7086
INDEL	Breast	HPX_L192Tfs*64	HLA-C03:03	MGTVPTMAL	0.9985	0.99	0.2446	19.4	0.0827	1.82	1/888	1/7086
INDEL	Breast	HPX_L192Tfs*64	HLA-C03:03	MALSICAVA	0.9435	0.9842	1.3915	359.3	0.8015	1.82	1/888	1/7086
INDEL	Breast	HPX_L192Tfs*64	HLA-C03:03	LSICAVAHI	0.9978	0.9332	1.9339	114.8	0.3949	1.82	1/888	1/7086
INDEL	Breast	HPX_L192Tfs*64	HLA-B44:03	AEAMDTGMGL	0.9726	0.9853	0.2727	47.8	0.0545	1.82	1/888	1/7086
INDEL	Breast	HPX_L192Tfs*64	HLA-B15:01	AMDTGMGLAM	0.9674	0.965	1.8524	120	0.6101	1.82	1/888	1/7086
INDEL	Breast	HPX_L192Tfs*64	HLA-A02:01	GLAMGTVPTM	0.9387	0.5685	0.8991	120.8	1.1944	1.82	1/888	1/7086
INDEL	Breast	HPX_L192Tfs*64	HLA-C16:01	MGLAMGTVPTM	0.9725	0.9894	1.8202	449.7	1.2805	1.82	1/888	1/7086
INDEL	Breast	HPX_L192Tfs*64	HLA-C16:01	LAMGTVPTMAL	0.9846	0.9905	0.3956	283.3	0.8998	1.82	1/888	1/7086
INDEL	Breast	HPX_L192Tfs*64	HLA-C03:03	LAMGTVPTMAL	0.9996	0.9926	0.2882	81.2	0.3154	1.82	1/888	1/7086
INDEL	Breast	SBNO1_S1007Lfs*26	HLA-C16:01	LAGEQRFAL	0.9928	0.9833	0.4737	76.8	0.2684	12.02	1/888	1/7086
INDEL	Breast	SBNO1_S1007Lfs*26	HLA-C03:03	LAGEQRFAL	0.9998	0.9834	0.4426	109.7	0.3844	12.02	1/888	1/7086
INDEL	Breast	SBNO1_S1007Lfs*26	HLA-B44:03	GEQRFALLL	0.993	0.7553	0.2684	72.3	0.0861	12.02	1/888	1/7086
INDEL	Breast	SBNO1_S1007Lfs*26	HLA-C16:01	FALLLLKDL	0.9019	0.9802	0.4263	440.6	1.2611	12.02	1/888	1/7086
INDEL	Breast	SBNO1_S1007Lfs*26	HLA-C03:03	FALLLLKDL	0.9965	0.9887	0.367	169.5	0.5039	12.02	1/888	1/7086
INDEL	Breast	SBNO1_S1007Lfs*26	HLA-A02:01	LLLLKDLRV	0.9675	0.6997	0.5213	60.9	0.7415	12.02	1/888	1/7086
INDEL	Breast	SBNO1_S1007Lfs*26	HLA-C16:01	RVWGHLHMV	0.8983	0.9806	0.1182	201.7	0.6669	12.02	1/888	1/7086
INDEL	Breast	SBNO1_S1007Lfs*26	HLA-C16:01	MVIEGQQNL	0.9703	0.9836	0.1182	81	0.2837	12.02	1/888	1/7086
INDEL	Breast	SBNO1_S1007Lfs*26	HLA-C03:03	MVIEGQQNL	0.9996	0.9895	0.0583	32	0.1456	12.02	1/888	1/7086
INDEL	Breast	SBNO1_S1007Lfs*26	HLA-B44:03	GEQRFALLLL	0.9765	0.7558	1.3562	300.2	0.3009	12.02	1/888	1/7086
INDEL	Breast	SBNO1_S1007Lfs*26	HLA-A02:01	ALLLLKDLRV	0.9763	0.7222	0.6535	102.4	1.0733	12.02	1/888	1/7086
INDEL	Breast	SPIRE2_P405Rfs*10	HLA-C16:01	RAAQGAYL	0.9068	0.9883	0.5706	285.3	0.9049	2.18	1/888	1/7086
INDEL	Breast	HIATL1_L277Sfs*13	HLA-B15:01	GQYSSFFSL	0.9901	0.8483	0.1302	59.5	0.3165	35.86	1/888	1/7086
INDEL	Breast	HIATL1_L277Sfs*13	HLA-B15:01	SLSQAGHRF	0.9734	0.8189	0.276	88.5	0.4721	35.86	1/888	1/7086
INDEL	Breast	HMCN1_T1329Gfs*27	HLA-B57:03	ASVGSTSVW	0.9895	0.9937	0.0187	12.8	0.0122	2.37	1/888	1/7086
INDEL	Breast	HMCN1_T1329Gfs*27	HLA-B57:03	IASVGSTSVW	0.9938	0.9896	0.3009	19.1	0.0264	2.37	1/888	1/7086
INDEL	Breast	HMCN1_T1329Gfs*27	HLA-B57:03	VIASVGSTSVW	0.9966	0.9859	0.184	80.3	0.1716	2.37	1/888	1/7086
INDEL	Breast	CHD9_R1927Pfs*5	HLA-B57:03	RTLYPLNF	0.9982	0.9539	0.3107	334.5	0.5832	5.4	1/888	1/7086
INDEL	Breast	CHD9_R1927Pfs*5	HLA-B57:03	RASRTLYPL	0.9867	0.98	0.9889	66	0.1408	5.4	1/888	1/7086
INDEL	Breast	CHD9_R1927Pfs*5	HLA-C07:01	SRTLYPLNF	0.9992	0.602	0.0794	187.5	0.0714	5.4	1/888	1/7086
INDEL	Breast	CHD9_R1927Pfs*5	HLA-B57:03	ASRTLYPLNF	0.9967	0.9733	0.8228	468.7	0.7597	5.4	1/888	1/7086
INDEL	Breast	CHD9_R1927Pfs*5	HLA-B57:03	RASRTLYPLNF	0.9978	0.9761	0.8043	178.9	0.3641	5.4	1/888	1/7086
INDEL	Breast	GATA3_R398Qfs*109	HLA-C15:02	AALSQTHVL	0.9993	0.9169	0.0441	498.9	0.5284	50.12	1/888	1/7086
INDEL	Breast	GATA3_R398Qfs*109	HLA-A02:01	VLPEPHLAL	0.9817	0.6795	0.0745	139	1.3078	50.12	1/888	1/7086
INDEL	Breast	GATA3_R398Qfs*109	HLA-A02:01	AIQPVLWTT	0.7836	0.8093	1.192	249.4	1.8972	50.12	1/888	1/7086
INDEL	Breast	PTEN_E235Rfs*7	HLA-C07:01	TRRRQVHVL	0.9888	0.6433	0.4491	229.4	0.0851	22.48	1/888	1/7086
INDEL	Breast	GAS8_K295Tfs*34	HLA-A68:01	ESQGERAER	0.9903	0.5434	0.5195	75.9	0.7489	5.75	1/888	1/7086
INDEL	Breast	CDKN1B_S56Rfs*16	HLA-B57:01	RASASGISI	0.9526	0.9762	1.8202	421.3	0.6582	45.74	1/888	1/7086
INDEL	Breast	CDKN1B_S56Rfs*16	HLA-B57:01	RASASGISIF	0.9976	0.9737	1.0168	109.5	0.2451	45.74	1/888	1/7086
INDEL	Breast	TMEM100_L99Ffs*91	HLA-C12:03	SSGLFFTSL	0.898	0.9912	0.6058	373.5	1.2776	2.67	1/888	1/7086
INDEL	Breast	TMEM100_L99Ffs*91	HLA-C12:03	FTSLQCLVL	0.9704	0.9912	0.6314	224.3	0.8967	2.67	1/888	1/7086
INDEL	Breast	TRIP10_F197Sfs*48	HLA-B18:01	TETKPTSIF	0.9777	0.9611	0.0904	359.4	0.2292	25.7	1/888	1/7086
INDEL	Breast	TRIP10_F197Sfs*48	HLA-C12:03	YSISSKTWM	0.9772	0.9424	0.9711	34.8	0.1456	25.7	1/888	1/7086
INDEL	Breast	SLC2A9_L460Cfs*37	HLA-A02:01	NLYHRCYLPV	0.9498	0.7266	1.9055	49.2	0.6211	2.57	1/888	1/7086
INDEL	Breast	GATA3_D335Gfs*17	HLA-A02:01	CLQCLWALL	0.9472	0.8898	1.9543	270.8	1.9932	127.19	3/888	3/7086
INDEL	Breast	ZBTB24_H51Tfs*14	HLA-C07:01	FRATKPYL	0.9996	0.5078	0.5094	283	0.1026	12.7	1/888	1/7086
INDEL	Breast	ZBTB24_H51Tfs*14	HLA-A02:01	YLLPVVNTS	0.9771	0.8167	0.5637	109	1.1168	12.7	1/888	1/7086
INDEL	Breast	KIFC3_S319Ffs*26	HLA-A02:01	AMYEFRAGA	0.9907	0.5296	0.1581	38.9	0.5065	1.88	1/888	1/7086
INDEL	Breast	KIFC3_S319Ffs*26	HLA-C05:01	WADAGGDAV	0.9994	0.9717	0.4409	47.9	0.0271	1.88	1/888	1/7086
INDEL	Breast	KIFC3_S319Ffs*26	HLA-B18:01	YEFRAGAGPW	0.9815	0.8407	1.7731	127.8	0.0879	1.88	1/888	1/7086
INDEL	Breast	RUNX1_T219Hfs*15	HLA-A02:01	CLPEPLHCL	0.943	0.7488	0.3168	156.2	1.4174	58.13	1/888	1/7086
INDEL	Breast	CHIC2_N82Mfs*16	HLA-A02:01	VMYVGYFVA	0.9742	0.5638	0.5435	86.6	0.9628	27.01	1/888	1/7086
INDEL	Breast	CHIC2_N82Mfs*16	HLA-A02:01	FVAAFVAAA	0.9841	0.5983	0.2464	13.7	0.1675	27.01	1/888	1/7086
INDEL	Breast	CHIC2_N82Mfs*16	HLA-A02:01	VMYVGYFVAA	0.9701	0.5118	0.3495	41.4	0.5361	27.01	1/888	1/7086
INDEL	Breast	CHIC2_N82Mfs*16	HLA-A02:01	YVGYFVAAFV	0.9577	0.7361	1.6372	53	0.6613	27.01	1/888	1/7086
INDEL	Breast	ZFP36L1_I10Ffs*64	HLA-B13:02	RQWAPLLV	0.9959	0.9913	0.0282	277.7	0.0245	248.97	1/888	1/7086
INDEL	Breast	ZFP36L1_I10Ffs*64	HLA-B18:01	TERQWAPLL	0.7726	0.9774	0.7356	498.1	0.303	248.97	1/888	1/7086
INDEL	Breast	SPEN_H216Yfs*151	HLA-B57:01	ASRSRIFQY	0.9941	0.9875	0.3413	496	0.7443	8.13	1/888	1/7086
INDEL	Breast	SPEN_H216Yfs*151	HLA-B57:01	RSRIFQYAL	0.9903	0.9735	0.1994	115	0.2531	8.13	1/888	1/7086
INDEL	Breast	SPEN_H216Yfs*151	HLA-B57:01	KVLASRSRIF	0.9924	0.9452	1.4692	469.9	0.7136	8.13	1/888	1/7086
INDEL	Breast	PSMB5_L39Pfs*31	HLA-B57:01	KCFMEQPPW	0.9954	0.9973	0.6252	41.2	0.1132	96.56	1/888	1/7086
INDEL	Breast	SPATA6_Q45Hfs*25	HLA-A24:02	LFPWSSMPEW	0.995	0.8617	0.8468	158.2	0.3002	2.33	1/888	1/7086
INDEL	Breast	ZNF148_S397Rfs*4	HLA-A74:01	KLVLKKINR	0.9635	0.5798	0.3956	464.7	0.2208	9.23	1/888	1/7086
INDEL	Breast	GLCCI1_S291Cfs*14	HLA-B42:01	VPKSCFACAL	0.8291	0.6975	0.5094	10.7	0.0352	12.26	1/888	1/7086
INDEL	Breast	ARID1A_F2103Rfs*35	HLA-C03:04	TPFPPWAPM	0.9935	0.9963	1.0837	215.5	0.5903	59.48	1/888	1/7086
INDEL	Breast	ARID1A_F2103Rfs*35	HLA-B40:01	AEAQDPRTPF	0.994	0.5291	0.2054	344.3	0.5603	59.48	1/888	1/7086
INDEL	Breast	ARID1A_F2103Rfs*35	HLA-C03:04	SANSASRTTM	0.9984	0.9902	0.7356	444.3	0.9239	59.48	1/888	1/7086
INDEL	Breast	CDH1_P801Lfs*15	HLA-A02:01	YLPRLPIPM	0.9546	0.7046	0.463	76.6	0.8811	93.29	1/888	1/7086
INDEL	Breast	CDH1_P801Lfs*15	HLA-C03:04	YLPRLPIPM	0.9566	0.9898	0.5982	112.9	0.3909	93.29	1/888	1/7086
INDEL	Breast	CDH1_P801Lfs*15	HLA-C02:02	YLPRLPIPM	0.5031	0.993	0.6818	465.8	0.3194	93.29	1/888	1/7086
INDEL	Breast	CASZ1_D1482_H1502del	HLA-C07:02	MYKHAQHHF	0.6425	0.8772	0.3851	215	0.1407	16.89	1/888	1/7086
INDEL	Breast	MKRN3_E113Vfs*56	HLA-C03:04	VAIRTTFLV	0.9688	0.9744	1.6274	231.2	0.6173	5.26	1/888	1/7086
INDEL	Breast	MKRN3_E113Vfs*56	HLA-A33:01	FLVGRWPLR	0.9815	0.8026	0.4933	37.2	0.1025	5.26	1/888	1/7086
INDEL	Breast	MKRN3_E113Vfs*56	HLA-C07:02	GRWPLRVAF	0.9227	0.9789	0.0154	238.3	0.1567	5.26	1/888	1/7086
INDEL	Breast	MKRN3_E113Vfs*56	HLA-A33:01	WPLRVAFRR	0.986	0.5113	1.4215	334.2	0.6817	5.26	1/888	1/7086
INDEL	Breast	MKRN3_E113Vfs*56	HLA-C03:04	VAFRRLGPL	0.9975	0.9877	0.6191	24.7	0.1085	5.26	1/888	1/7086
INDEL	Breast	MKRN3_E113Vfs*56	HLA-C07:02	FRRLGPLQV	0.7375	0.9247	0.2778	105	0.0571	5.26	1/888	1/7086
INDEL	Breast	MKRN3_E113Vfs*56	HLA-C03:04	LQVEALARL	0.9799	0.9964	1.8773	389.8	0.8458	5.26	1/888	1/7086
INDEL	Breast	MKRN3_E113Vfs*56	HLA-B07:02	RLRTSSPRL	0.9849	0.5112	1.5432	259.6	0.5627	5.26	1/888	1/7086
INDEL	Breast	MKRN3_E113Vfs*56	HLA-C03:04	RLHPPFPCL	0.7939	0.9952	0.3987	471.3	0.9692	5.26	1/888	1/7086
INDEL	Breast	MKRN3_E113Vfs*56	HLA-A33:01	TFLVGRWPLR	0.9889	0.7573	0.5058	13.1	0.0235	5.26	1/888	1/7086
INDEL	Breast	MKRN3_E113Vfs*56	HLA-A03:01	RLRTSSPRLR	0.974	0.5798	0.4295	93.8	0.3468	5.26	1/888	1/7086
INDEL	Breast	MKRN3_E113Vfs*56	HLA-A03:01	RLRTSSPRLRK	0.9966	0.6455	0.5795	32.7	0.1111	5.26	1/888	1/7086
INDEL	Breast	ARMC5_G282Ffs*40	HLA-A33:01	SACTGQCWWR	0.9571	0.7932	1.473	324.3	0.6675	12.68	1/888	1/7086
INDEL	Breast	ARMC5_G282Ffs*40	HLA-A33:01	DSACTGQCWWR	0.9938	0.9041	1.5935	449.3	0.8463	12.68	1/888	1/7086
INDEL	Breast	ZNF432_T136_K138del	HLA-C07:02	LYIKSNLSL	0.5413	0.8416	0.1354	115.5	0.0624	3.23	1/888	1/7086
INDEL	Breast	TBC1D2B_L398Cfs*29	HLA-B58:01	ASWRGSAW	0.9885	0.987	0.051	136.7	0.592	10.9	1/888	1/7086
INDEL	Breast	TBC1D2B_L398Cfs*29	HLA-B58:01	CTKRMIRFW	0.9927	0.6473	0.6333	97	0.4667	10.9	1/888	1/7086
INDEL	Breast	TBC1D2B_L398Cfs*29	HLA-C07:01	KRMIRFWAL	0.9983	0.6444	0.033	188.4	0.0718	10.9	1/888	1/7086
INDEL	Breast	TBC1D2B_L398Cfs*29	HLA-B58:01	RFWALPASW	0.7545	0.9923	0.0995	81.5	0.4127	10.9	1/888	1/7086
INDEL	Breast	TBC1D2B_L398Cfs*29	HLA-A74:01	ASWRGSAWR	0.9855	0.7685	0.4153	311.4	0.144	10.9	1/888	1/7086
INDEL	Breast	TBC1D2B_L398Cfs*29	HLA-A74:01	RFWALPASWR	0.9912	0.9619	0.7616	480.8	0.2296	10.9	1/888	1/7086
INDEL	Breast	TBC1D2B_L398Cfs*29	HLA-B58:01	LPASWRGSAW	0.9143	0.9808	0.5962	120.4	0.5424	10.9	1/888	1/7086
INDEL	Breast	TBC1D2B_L398Cfs*29	HLA-A74:01	SAWRRRVFSR	0.9766	0.6428	1.566	453.9	0.2148	10.9	1/888	1/7086
INDEL	Breast	RASGRF1_Y28Lfs*75	HLA-C16:01	MANQVVRAA	0.9804	0.9831	0.276	369.1	1.0893	2.46	1/888	1/7086
INDEL	Breast	RASGRF1_Y28Lfs*75	HLA-B58:01	RAAAEPALL	0.9682	0.9702	1.0891	136	0.5902	2.46	1/888	1/7086
INDEL	Breast	RASGRF1_Y28Lfs*75	HLA-B15:16	RAAAEPALL	0.9869	0.9569	1.0601	177.1	0.6451	2.46	1/888	1/7086
INDEL	Breast	RASGRF1_Y28Lfs*75	HLA-C16:01	RAAAEPALL	0.9793	0.9909	0.3168	41.8	0.1272	2.46	1/888	1/7086
INDEL	Breast	RASGRF1_Y28Lfs*75	HLA-B15:16	AAAEPALLL	0.9829	0.8948	0.2978	326.5	1.1752	2.46	1/888	1/7086
INDEL	Breast	RASGRF1_Y28Lfs*75	HLA-C16:01	AAAEPALLL	0.9834	0.9891	0.0618	50.4	0.1599	2.46	1/888	1/7086
INDEL	Breast	RASGRF1_Y28Lfs*75	HLA-C16:01	RALPQAGAV	0.8013	0.9946	0.5058	56.8	0.1894	2.46	1/888	1/7086
INDEL	Breast	RASGRF1_Y28Lfs*75	HLA-C16:01	RAAAEPALLL	0.9914	0.9894	0.7151	357	1.0659	2.46	1/888	1/7086
INDEL	Breast	P2RY13_A262Vfs*19	HLA-B35:01	ISFCQSSIY	0.9771	0.6778	0.9762	115.9	0.351	1.42	1/888	1/7086
INDEL	Breast	CDH1_R108Hfs*56	HLA-B14:02	SRIAHISQL	0.9992	0.926	0.0062	307.9	0.025	22.45	1/888	1/7086
INDEL	Breast	KIF26A_E59Lfs*54	HLA-C03:04	TSTWGPASL	0.9981	0.9951	0.4986	67.3	0.2724	4.87	1/888	1/7086
INDEL	Breast	KIF26A_E59Lfs*54	HLA-C03:04	LSPRGRAPL	0.9888	0.9725	0.5399	430.1	0.8992	4.87	1/888	1/7086
INDEL	Breast	KIF26A_E59Lfs*54	HLA-A68:01	QATGVEAGQR	0.9415	0.5866	0.5144	50.5	0.5492	4.87	2/888	2/7086
INDEL	Breast	KIF26A_E59Lfs*54	HLA-A68:01	QATGVEAGQR	0.9415	0.5866	0.5144	50.5	0.5492	4.87	2/888	2/7086
INDEL	Breast	RSPH1_F61Lfs*82	HLA-C03:04	MAYTTTSI	0.9989	0.9907	0.5904	79.1	0.3093	11.65	1/888	1/7086
INDEL	Breast	RSPH1_F61Lfs*82	HLA-C03:04	MVLDISENM	0.9992	0.9902	0.5279	107.2	0.379	11.65	1/888	1/7086
INDEL	Breast	RSPH1_F61Lfs*82	HLA-C05:01	VLDISENML	0.9999	0.9538	0.0344	83.2	0.0436	11.65	1/888	1/7086
INDEL	Breast	RSPH1_F61Lfs*82	HLA-C03:04	MAYTTTSIM	0.9993	0.9903	0.3866	3	0.008	11.65	1/888	1/7086
INDEL	Breast	RSPH1_F61Lfs*82	HLA-C03:04	TTSIMTPTL	0.9974	0.9885	0.6758	248.5	0.6461	11.65	1/888	1/7086
INDEL	Breast	RSPH1_F61Lfs*82	HLA-C03:04	YTRRRAVSM	0.9687	0.978	1.8708	232.1	0.6189	11.65	1/888	1/7086
INDEL	Breast	MBD6_L626Cfs*49	HLA-A31:01	LGMGRDLQR	0.9148	0.6449	0.8723	165.4	1.0603	56.29	1/888	1/7086
INDEL	Breast	GATA3_D335Gfs*21	HLA-C03:03	SAMPVGSTT	0.8394	0.9917	0.4078	242.4	0.6362	858.79	1/888	1/7086
INDEL	Breast	GATA3_D335Gfs*21	HLA-C03:04	SAMPVGSTT	0.8394	0.9917	0.5815	242.4	0.6362	858.79	1/888	1/7086
INDEL	Breast	GATA3_D335Gfs*21	HLA-C03:03	MPVGSTTSF	0.992	0.9955	0.1014	142.5	0.4543	858.79	1/888	1/7086
INDEL	Breast	GATA3_D335Gfs*21	HLA-C03:04	MPVGSTTSF	0.992	0.9955	0.1302	142.5	0.4543	858.79	1/888	1/7086
INDEL	Breast	GATA3_D335Gfs*21	HLA-C03:03	SAMPVGSTTSF	0.9998	0.9939	0.0383	418.8	0.8848	858.79	1/888	1/7086
INDEL	Breast	GATA3_D335Gfs*21	HLA-C03:04	SAMPVGSTTSF	0.9998	0.9939	0.0495	418.8	0.8848	858.79	1/888	1/7086
INDEL	Breast	CDH1_L343del	HLA-C03:03	ESFPTYTVV	0.9535	0.9917	0.9226	188.9	0.5429	200.94	1/888	1/7086
INDEL	Breast	CDH1_L343del	HLA-C03:04	ESFPTYTVV	0.9535	0.9917	0.9642	188.9	0.5429	200.94	1/888	1/7086
INDEL	Breast	CDH1_L343del	HLA-C03:03	YTVVQAADL	0.9929	0.9809	0.786	121.5	0.4097	200.94	1/888	1/7086
INDEL	Breast	CDH1_L343del	HLA-C03:04	YTVVQAADL	0.9929	0.9809	0.7376	121.5	0.4097	200.94	1/888	1/7086
INDEL	Breast	MEFV_S483Hfs*30	HLA-A11:01	VAHWRTWAR	0.8009	0.5766	1.156	405.8	1.5639	1.23	1/888	1/7086
INDEL	Breast	MEFV_S483Hfs*30	HLA-A11:01	RTWARWLGR	0.9922	0.544	0.0427	43.1	0.2647	1.23	1/888	1/7086
INDEL	Breast	MEFV_S483Hfs*30	HLA-B27:06	ARWLGRSGRHM	0.9999	0.6683	0.6137	119	0.2813	1.23	1/888	1/7086
INDEL	Breast	LRFN1_L215Rfs*9	HLA-B27:06	RRHDLQPPA	0.9986	0.7754	0.4659	143.1	0.3284	5.7	1/888	1/7086
INDEL	Breast	ATRAID_G208_S213del	HLA-A02:03	LLMFFGILV	0.9937	0.6257	0.2102	57.5	1.2786	142.29	1/888	1/7086
INDEL	Breast	ATRAID_G208_S213del	HLA-A02:03	ILVSILLWA	0.9491	0.663	0.3639	41.1	0.997	142.29	1/888	1/7086
INDEL	Breast	ATRAID_G208_S213del	HLA-A02:03	SLLMFFGILV	0.9936	0.7453	0.4789	71.2	1.5039	142.29	1/888	1/7086
INDEL	Breast	MUC4_G3516_H3517insDTTTLPVTDTSSVSTGHATPLPVTSFSSVSTGDTTPLPVTDASSASTG	HLA-A02:03	TLPVTDTSSV	0.9548	0.6181	0.7376	21.5	0.5406	2.16	1/888	1/7086
INDEL	Breast	SLCO2B1_R362_P371del	HLA-A02:03	KVFPIFLLVV	0.9924	0.6251	0.1098	34.3	0.8566	11.04	1/888	1/7086
INDEL	Breast	CYP4F11_L514_E517del	HLA-C08:01	RAEGGLWPL	0.6522	0.9974	0.8127	351.2	0.1255	18.48	1/888	1/7086
INDEL	Breast	SFI1_R333Kfs*42	HLA-A02:03	YSLETLHAA	0.9719	0.8044	0.1656	76.2	1.578	6.07	1/888	1/7086
INDEL	Breast	SFI1_R333Kfs*42	HLA-A02:03	SLETLHAAV	0.9877	0.9257	0.4491	51.8	1.1906	6.07	1/888	1/7086
INDEL	Breast	SFI1_R333Kfs*42	HLA-A02:03	RLYSLETLHA	0.9949	0.7569	0.1688	29	0.7252	6.07	1/888	1/7086
INDEL	Breast	SFI1_R333Kfs*42	HLA-A02:03	YSLETLHAAV	0.9944	0.9237	1.8266	28.8	0.7213	6.07	1/888	1/7086
INDEL	Breast	SFI1_R333Kfs*42	HLA-A02:03	RLYSLETLHAA	0.998	0.8449	0.6295	28.1	0.6999	6.07	1/888	1/7086
INDEL	Breast	MYO6_K289Rfs*17	HLA-B35:05	FANKETDRF	0.9656	0.5955	0.2841	58.3	0.1614	265.32	1/888	1/7086
INDEL	Breast	MYO6_K289Rfs*17	HLA-B35:05	FANKETDRFY	0.9677	0.5479	1.2828	215.4	0.4899	265.32	1/888	1/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-C08:01	SSLSHISAL	0.985	0.9816	0.1514	430.8	0.1548	1724.09	1/888	1/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-B35:05	HAHADAPAI	0.7798	0.8982	0.8677	232.1	0.517	1724.09	1/888	1/7086
INDEL	Breast	LGALS3BP_P502Rfs*92	HLA-B35:05	LPHGHPPLL	0.97	0.7934	0.0166	117.3	0.3092	3702.18	1/888	1/7086
INDEL	Breast	MAP3K1_T457Sfs*3	HLA-C08:01	MLDEESLSV	0.5638	0.992	0.3624	309.9	0.1099	102.26	1/888	1/7086
INDEL	Breast	KMT2D_L520Cfs*410	HLA-B15:02	HLLHLRRLY	0.9289	0.8798	0.5512	225.6	0.3767	13.23	1/888	1/7086
INDEL	Breast	KMT2D_L520Cfs*410	HLA-B15:02	HLCPPHLRY	0.9961	0.8539	0.0875	378.6	0.5753	13.23	1/888	1/7086
INDEL	Breast	KMT2D_L520Cfs*410	HLA-B15:02	SLPLGNHPY	0.9666	0.9443	0.1807	247.4	0.409	13.23	1/888	1/7086
INDEL	Breast	KMT2D_L520Cfs*410	HLA-A11:01	RSHPCPLHLK	0.9991	0.7713	0.2712	29.4	0.1747	13.23	2/888	2/7086
INDEL	Breast	KMT2D_L520Cfs*410	HLA-A11:01	RSHPCPLHLK	0.9991	0.7713	0.2712	29.4	0.1747	13.23	2/888	2/7086
INDEL	Breast	KMT2D_L520Cfs*410	HLA-A11:01	RSLPFPHHLR	0.9929	0.5874	0.1465	70.6	0.4241	13.23	2/888	2/7086
INDEL	Breast	KMT2D_L520Cfs*410	HLA-A11:01	RSLPFPHHLR	0.9929	0.5874	0.1465	70.6	0.4241	13.23	2/888	2/7086
INDEL	Breast	KMT2D_L520Cfs*410	HLA-A11:01	RTRLCPHHLK	0.9958	0.5441	0.651	19.9	0.1009	13.23	2/888	2/7086
INDEL	Breast	KMT2D_L520Cfs*410	HLA-A11:01	RTRLCPHHLK	0.9958	0.5441	0.651	19.9	0.1009	13.23	2/888	2/7086
INDEL	Breast	KMT2D_L520Cfs*410	HLA-A11:01	RLHASPHHLR	0.8826	0.5794	1.1339	335.4	1.3994	13.23	2/888	2/7086
INDEL	Breast	KMT2D_L520Cfs*410	HLA-A11:01	RLHASPHHLR	0.8826	0.5794	1.1339	335.4	1.3994	13.23	2/888	2/7086
INDEL	Breast	KMT2D_L520Cfs*410	HLA-A11:01	RSHPCCHYLR	0.9812	0.6802	1.9269	323.2	1.3671	13.23	2/888	2/7086
INDEL	Breast	KMT2D_L520Cfs*410	HLA-A11:01	RSHPCCHYLR	0.9812	0.6802	1.9269	323.2	1.3671	13.23	2/888	2/7086
INDEL	Breast	KMT2D_L520Cfs*410	HLA-A11:01	RSHPCPLGLK	0.9991	0.6404	0.3639	44.4	0.2734	13.23	2/888	2/7086
INDEL	Breast	KMT2D_L520Cfs*410	HLA-A11:01	RSHPCPLGLK	0.9991	0.6404	0.3639	44.4	0.2734	13.23	2/888	2/7086
INDEL	Breast	SETD2_H2538Pfs*26	HLA-B58:01	STCRSLGLF	0.9706	0.7922	0.6715	469.5	1.3703	27.32	1/888	1/7086
INDEL	Breast	SETD2_H2538Pfs*26	HLA-B07:05	KPRSTLRSTC	0.9901	0.5402	1.2725	92.6	0.3277	27.32	1/888	1/7086
INDEL	Breast	RGP1_Y115Hfs*18	HLA-B07:05	HLGPPGSPL	0.9696	0.7351	0.7376	278.5	0.6705	11.19	1/888	1/7086
INDEL	Breast	RGP1_Y115Hfs*18	HLA-C03:02	HLGPPGSPL	0.9164	0.9897	0.1915	463.2	1.3884	11.19	1/888	1/7086
INDEL	Breast	RGP1_Y115Hfs*18	HLA-B58:01	GSPLGTGSW	0.9698	0.9908	0.5213	395.8	1.2283	11.19	1/888	1/7086
INDEL	Breast	RGP1_Y115Hfs*18	HLA-B07:05	SPLGTGSWVL	0.9917	0.5086	0.5312	14.6	0.0545	11.19	1/888	1/7086
INDEL	Breast	RGP1_Y115Hfs*18	HLA-C03:02	YSHLGPPGSPL	0.9999	0.9857	0.8208	289.5	1.0077	11.19	1/888	1/7086
INDEL	Breast	TP53_T102Pfs*21	HLA-C03:03	VSVWASCIL	0.9969	0.9927	1.205	79.8	0.3114	22.08	1/888	1/7086
INDEL	Breast	TP53_T102Pfs*21	HLA-C03:04	VSVWASCIL	0.9969	0.9927	1.1307	79.8	0.3114	22.08	1/888	1/7086
INDEL	Breast	ITGA3_L588Ifs*54	HLA-C03:03	RSAGLTTSV	0.9529	0.9886	0.5165	168.7	0.5023	92.92	1/888	1/7086
INDEL	Breast	ITGA3_L588Ifs*54	HLA-C03:04	RSAGLTTSV	0.9529	0.9886	0.5213	168.7	0.5023	92.92	1/888	1/7086
INDEL	Breast	ITGA3_L588Ifs*54	HLA-A33:03	ISCGPWTPTR	0.9625	0.6421	0.6488	345.1	0.9649	92.92	1/888	1/7086
INDEL	Breast	GATA3_D335Gfs*17	HLA-A02:01	CLQCLWALL	0.9472	0.8898	1.9543	270.8	1.9932	827.74	3/888	3/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-A02:03	LLIVATIAA	0.9917	0.6841	0.4426	59.4	1.3075	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-A02:03	IVATIAANV	0.9918	0.6835	0.251	11.7	0.2589	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-C03:17	VATIAANVV	0.9823	0.9771	0.68	365.2	0.639	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-C03:17	ATIAANVVL	0.9989	0.9658	0.2526	74.7	0.1666	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-C12:02	ATIAANVVL	0.9904	0.919	0.2712	489.7	0.6775	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-C03:17	TIAANVVLL	0.9963	0.9396	0.6949	443.3	0.7399	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-C12:02	AANVVLLSV	0.7758	0.9596	0.1317	488.4	0.6761	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-C03:17	VLLSVGPAL	0.7886	0.9561	0.5757	407.1	0.6909	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-C03:17	FFPASPLSL	0.9784	0.9753	0.0142	340.1	0.605	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-C12:02	FFPASPLSL	0.965	0.9902	0.0441	395.8	0.5578	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-A02:03	SLCGFVTSA	0.9961	0.7965	0.0299	14	0.3334	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-C03:17	FVTSAMTCF	0.7602	0.94	1.7038	418	0.7045	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-C12:02	FVTSAMTCF	0.751	0.9623	0.5399	112	0.1379	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-A02:03	AMTCFLLGT	0.9641	0.7385	0.5181	101.4	1.9335	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-A02:03	FLLGTWPHA	0.9961	0.742	0.1212	13.3	0.3121	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-C03:17	LGTWPHASL	0.9978	0.9794	0.7554	152.6	0.3161	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-C03:17	GTWPHASLL	0.9906	0.9827	0.4061	192	0.3795	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-C03:17	HASLLDQTL	0.9992	0.9868	0.4475	230.8	0.4408	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-C12:02	HASLLDQTL	0.922	0.9886	0.3657	427.4	0.6	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-A02:03	SLLDQTLTA	0.9959	0.9198	0.0618	22.7	0.5697	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-A02:03	CMRSHLLIVA	0.9817	0.5658	1.4863	77.4	1.5956	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-A02:03	LIVATIAANV	0.9937	0.7272	0.7702	13.9	0.3297	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-A02:03	IVATIAANVV	0.9797	0.7516	1.5343	41.4	1.0038	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-A02:03	IAANVVLLSV	0.9906	0.796	0.5583	95.5	1.8633	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-C03:17	FFFPASPLSL	0.9965	0.9741	0.0177	339	0.6033	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-C12:02	FFFPASPLSL	0.9967	0.9914	0.0875	249.5	0.3641	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-A02:03	SLCGFVTSAM	0.985	0.7807	0.2978	100.7	1.9266	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-A02:03	FVTSAMTCFL	0.9608	0.6629	1.014	48.7	1.1357	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-A02:03	LLGTWPHASL	0.9875	0.6584	0.2499	94.4	1.8472	67.06	1/888	1/7086
INDEL	Breast	PLEKHF2_C161Sfs*66	HLA-A02:03	FLLGTWPHASL	0.9953	0.6867	1.9978	75.5	1.5676	67.06	1/888	1/7086
INDEL	Breast	PIK3R1_R574del	HLA-A30:01	SIKPDLIQLK	0.9887	0.7604	0.388	234.3	1.0946	83.61	1/888	1/7086
INDEL	Breast	TRIP10_E585Rfs*47	HLA-A30:01	RVRRKRGRR	0.9811	0.7049	1.6663	291.6	1.314	16.67	1/888	1/7086
INDEL	Breast	TRIP10_E585Rfs*47	HLA-C07:02	RRGLRAHLL	0.9311	0.9615	0.5399	273.8	0.1796	16.67	1/888	1/7086
INDEL	Breast	TP53_N131Tfs*39	HLA-A11:01	CTYSPALTR	0.9981	0.5014	0.2319	32.7	0.1961	19.64	2/888	2/7086
INDEL	Breast	TP53_N131Tfs*39	HLA-A11:01	CTYSPALTR	0.9981	0.5014	0.2319	32.7	0.1961	19.64	2/888	2/7086
INDEL	Breast	TP53_N131Tfs*39	HLA-C03:04	FANWPRPAL	0.9999	0.9929	0.0017	3.6	0.0094	19.64	1/888	1/7086
INDEL	Breast	TP53_N131Tfs*39	HLA-C08:01	FANWPRPAL	0.9969	0.9912	0.0017	40.6	0.01	19.64	1/888	1/7086
INDEL	Breast	TP53_N131Tfs*39	HLA-A11:01	VTCTYSPALTR	0.9956	0.5242	1.3	196.2	0.9888	19.64	2/888	2/7086
INDEL	Breast	TP53_N131Tfs*39	HLA-A11:01	VTCTYSPALTR	0.9956	0.5242	1.3	196.2	0.9888	19.64	2/888	2/7086
INDEL	Breast	CENPU_F44Tfs*80	HLA-A30:01	KMRKMKKLM	0.8604	0.846	0.9079	62.1	0.319	39.9	1/888	1/7086
INDEL	Breast	CENPU_F44Tfs*80	HLA-A30:01	KMKKLMRPL	0.9667	0.7299	0.5868	41.7	0.2183	39.9	1/888	1/7086
INDEL	Breast	CENPU_F44Tfs*80	HLA-A30:01	KLMRPLILL	0.9568	0.8222	0.9129	329.5	1.458	39.9	1/888	1/7086
INDEL	Breast	CENPU_F44Tfs*80	HLA-A30:01	LMRPLILLY	0.9084	0.6782	0.2102	245.7	1.1404	39.9	1/888	1/7086
INDEL	Breast	CENPU_F44Tfs*80	HLA-C07:02	MRPLILLYI	0.9624	0.8689	0.0539	189.2	0.1213	39.9	1/888	1/7086
INDEL	Breast	CENPU_F44Tfs*80	HLA-C07:02	LYIAQLYML	0.5963	0.9056	0.5999	343.5	0.2277	39.9	1/888	1/7086
INDEL	Breast	CENPU_F44Tfs*80	HLA-A30:01	IAQLYMLMK	0.9434	0.6955	1.7612	451.7	1.8902	39.9	1/888	1/7086
INDEL	Breast	CENPU_F44Tfs*80	HLA-A30:01	AQLYMLMKK	0.959	0.7287	1.2147	340.9	1.4988	39.9	1/888	1/7086
INDEL	Breast	CENPU_F44Tfs*80	HLA-A30:01	KQKEVQTLL	0.9508	0.8883	0.193	268.7	1.2288	39.9	1/888	1/7086
INDEL	Breast	CENPU_F44Tfs*80	HLA-A30:01	KLMRPLILLY	0.9338	0.8094	1.5343	88.5	0.4447	39.9	1/888	1/7086
INDEL	Breast	TBX3_N211Tfs*32	HLA-A30:01	RGRGIIVLV	0.9936	0.7411	0.5815	16.6	0.0584	32.06	1/888	1/7086
INDEL	Breast	SYT1_A167Gfs*19	HLA-C03:02	IIQAGSYTY	0.8581	0.9583	0.2039	215.6	0.8083	108.93	1/888	1/7086
INDEL	Breast	GATA3_K387Gfs*113	HLA-B07:02	APAIQPVL	0.9964	0.7344	0.0255	100.2	0.2968	1438.14	1/888	1/7086
INDEL	Breast	GATA3_K387Gfs*113	HLA-B07:02	QPVLWTTPPL	0.9713	0.6432	0.7226	32.7	0.1156	1438.14	1/888	1/7086
INDEL	Breast	NLRP3_Y385Gfs*92	HLA-C03:02	HVLHPPGLL	0.9345	0.992	0.897	376.9	1.2057	3.2	1/888	1/7086
INDEL	Breast	NLRP3_Y385Gfs*92	HLA-B58:01	WTETADGEW	0.834	0.9794	1.224	167.8	0.6808	3.2	1/888	1/7086
INDEL	Breast	NLRP3_Y385Gfs*92	HLA-B07:05	GARPLRPPL	0.9988	0.7226	0.4001	46.4	0.1804	3.2	1/888	1/7086
INDEL	Breast	NLRP3_Y385Gfs*92	HLA-B07:05	RPLRPPLGA	0.9982	0.7745	0.033	118.8	0.3843	3.2	1/888	1/7086
INDEL	Breast	NLRP3_Y385Gfs*92	HLA-B58:01	GALLFGCRW	0.9975	0.9809	0.4001	40.2	0.245	3.2	1/888	1/7086
INDEL	Breast	NLRP3_Y385Gfs*92	HLA-A33:03	DIQDHHRGVR	0.6724	0.5685	0.6594	441	1.1406	3.2	1/888	1/7086
INDEL	Breast	NLRP3_Y385Gfs*92	HLA-B07:05	RPLRPPLGAL	0.9996	0.6217	0.0583	2.7	0.006	3.2	1/888	1/7086
INDEL	Breast	NLRP3_Y385Gfs*92	HLA-B58:01	LGALLFGCRW	0.9979	0.9775	1.1617	54	0.3005	3.2	1/888	1/7086
INDEL	Breast	NLRP3_Y385Gfs*92	HLA-B07:05	APGREPGARPL	1	0.7028	0.5002	319.8	0.7282	3.2	1/888	1/7086
INDEL	Breast	NLRP3_Y385Gfs*92	HLA-B07:05	EPGARPLRPPL	0.9998	0.651	1.3729	197	0.5383	3.2	1/888	1/7086
INDEL	Breast	NLRP3_Y385Gfs*92	HLA-B07:05	RPLRPPLGALL	0.9999	0.5921	0.1994	33.7	0.1339	3.2	1/888	1/7086
INDEL	Breast	NUP205_L1536Ffs*18	HLA-B58:01	RTFLLHLF	0.9971	0.8859	0.4529	220.3	0.8345	109.46	1/888	1/7086
INDEL	Breast	NUP205_L1536Ffs*18	HLA-C03:02	YSPHSLPF	0.9996	0.9542	1.073	217.7	0.8145	109.46	1/888	1/7086
INDEL	Breast	NUP205_L1536Ffs*18	HLA-C03:02	SLVEDDRTF	0.7858	0.9383	0.6295	481.5	1.4235	109.46	1/888	1/7086
INDEL	Breast	NUP205_L1536Ffs*18	HLA-C03:02	FSRAYSPHSL	0.9969	0.9776	0.6117	202.2	0.7738	109.46	1/888	1/7086
INDEL	Breast	NUP205_L1536Ffs*18	HLA-B58:01	RAYSPHSLPF	0.996	0.9345	1.9404	27.9	0.1848	109.46	1/888	1/7086
INDEL	Breast	NUP205_L1536Ffs*18	HLA-C03:02	RAYSPHSLPF	0.9983	0.9536	0.4367	14.4	0.0534	109.46	1/888	1/7086
INDEL	Breast	SF3A3_S251Lfs*27	HLA-C08:01	LSAFSLMEL	0.9088	0.994	0.6018	361	0.1295	50.15	1/888	1/7086
INDEL	Breast	SF3A3_S251Lfs*27	HLA-C08:01	FSLMELMVI	0.8368	0.9833	1.2968	335.7	0.1198	50.15	1/888	1/7086
INDEL	Breast	SF3A3_S251Lfs*27	HLA-B38:02	AHLDLSAFSL	0.999	0.9818	0.3717	223.4	0.029	50.15	1/888	1/7086
INDEL	Breast	MGLL_E134Afs*19	HLA-A02:03	AIAILTAAA	0.96	0.6004	0.704	47.8	1.1202	9.38	1/888	1/7086
INDEL	Breast	MGLL_E134Afs*19	HLA-A02:03	ILTAAAGPL	0.9632	0.8396	0.6079	80	1.6346	9.38	1/888	1/7086
INDEL	Breast	DENND1A_S153del	HLA-B58:01	VSVHLSVHY	0.9932	0.6321	0.3427	213.8	0.8161	12.82	1/888	1/7086
INDEL	Breast	DENND1A_S153del	HLA-C03:02	VSVHLSVHY	0.9863	0.9355	0.2122	184	0.725	12.82	1/888	1/7086
INDEL	Breast	DENND1A_S153del	HLA-C03:02	SVHLSVHYF	0.9437	0.9242	0.267	225.2	0.8362	12.82	1/888	1/7086
INDEL	Breast	DENND1A_S153del	HLA-B58:01	VSVHLSVHYF	0.9989	0.6969	0.8065	69.4	0.3677	12.82	1/888	1/7086
INDEL	Breast	GATA3_H434Pfs*73	HLA-C14:02	LSFGPHPPL	0.7427	0.9827	0.9472	118.2	0.3885	856.57	1/888	1/7086
INDEL	Breast	DOK1_L420_P425del	HLA-B15:02	STKPQGPAF	0.9906	0.8162	0.0848	162.7	0.2748	4.94	1/888	1/7086
INDEL	Breast	ARID1A_R727Lfs*12	HLA-C03:04	LASRTASCI	0.9595	0.9889	1.9339	480.1	0.9834	27.53	1/888	1/7086
INDEL	Breast	ICA1_P417Qfs*30	HLA-B15:02	RLRFPSFAAF	0.9849	0.962	0.5128	94.6	0.165	25.85	1/888	1/7086
INDEL	Breast	GATA3_P408Rfs*99	HLA-B35:05	HAHADAPAI	0.7798	0.8982	0.8677	232.1	0.517	1180.05	1/888	1/7086
INDEL	Breast	GATA3_P408Rfs*99	HLA-A02:06	AIQPVLWTT	0.8004	0.8656	0.9014	61.3	0.7428	1180.05	1/888	1/7086
INDEL	Breast	CORO6_A53Lfs*103	HLA-A02:03	FLAIIVEL	0.9956	0.8122	0.8065	52.9	1.2082	146.61	1/888	1/7086
INDEL	Breast	CORO6_A53Lfs*103	HLA-A02:03	IIVELEAGV	0.9899	0.7155	0.2942	26.6	0.6673	146.61	1/888	1/7086
INDEL	Breast	CORO6_A53Lfs*103	HLA-A02:06	IIVELEAGV	0.9913	0.7331	0.4033	40.8	0.5186	146.61	1/888	1/7086
INDEL	Breast	CORO6_A53Lfs*103	HLA-A02:06	GTLPLCWIL	0.8325	0.8241	0.9079	125.8	1.2908	146.61	1/888	1/7086
INDEL	Breast	CORO6_A53Lfs*103	HLA-A02:06	WILTGVHTM	0.8226	0.5579	0.4933	49.8	0.6174	146.61	1/888	1/7086
INDEL	Breast	CORO6_A53Lfs*103	HLA-B15:25	WILTGVHTM	0.9299	0.9281	0.6408	121.5	0.7372	146.61	1/888	1/7086
INDEL	Breast	CORO6_A53Lfs*103	HLA-A02:03	HTMTTLSPV	0.9869	0.5016	0.433	6.5	0.0999	146.61	1/888	1/7086
INDEL	Breast	CORO6_A53Lfs*103	HLA-A02:03	TLRNLSSHL	0.9846	0.7433	0.5296	69.6	1.4776	146.61	1/888	1/7086
INDEL	Breast	CORO6_A53Lfs*103	HLA-B15:25	TLRNLSSHL	0.736	0.8828	1.2661	424.2	1.7428	146.61	1/888	1/7086
INDEL	Breast	CORO6_A53Lfs*103	HLA-B15:25	HLRATPSVW	0.8527	0.9101	0.3898	208.4	1.1141	146.61	1/888	1/7086
INDEL	Breast	CORO6_A53Lfs*103	HLA-A02:03	LLPGMSCSV	0.9957	0.7098	0.1915	9.5	0.1911	146.61	1/888	1/7086
INDEL	Breast	CORO6_A53Lfs*103	HLA-A02:06	LLPGMSCSV	0.9788	0.6862	0.3386	52.8	0.6501	146.61	1/888	1/7086
INDEL	Breast	CORO6_A53Lfs*103	HLA-A02:03	GMSCSVQVV	0.9975	0.6761	0.1821	11.7	0.2598	146.61	1/888	1/7086
INDEL	Breast	CORO6_A53Lfs*103	HLA-A02:03	FLAIIVELEA	0.9959	0.7807	1.2561	19.1	0.4772	146.61	1/888	1/7086
INDEL	Breast	CORO6_A53Lfs*103	HLA-A02:06	FLAIIVELEA	0.9922	0.7113	1.0705	146.1	1.4311	146.61	1/888	1/7086
INDEL	Breast	CORO6_A53Lfs*103	HLA-A02:03	AIIVELEAGV	0.9806	0.8029	1.5029	20	0.4985	146.61	1/888	1/7086
INDEL	Breast	CORO6_A53Lfs*103	HLA-A02:06	AIIVELEAGV	0.9719	0.8396	1.432	38.3	0.4883	146.61	1/888	1/7086
INDEL	Breast	CORO6_A53Lfs*103	HLA-B15:25	FQTIPPCATL	0.8191	0.9887	0.8813	399.4	1.6752	146.61	1/888	1/7086
INDEL	Breast	CORO6_A53Lfs*103	HLA-A02:03	TLLPGMSCSV	0.9982	0.7194	0.1963	8.5	0.1605	146.61	1/888	1/7086
INDEL	Breast	CORO6_A53Lfs*103	HLA-A02:06	TLLPGMSCSV	0.9916	0.6589	0.388	28.3	0.3619	146.61	1/888	1/7086
INDEL	Breast	CORO6_A53Lfs*103	HLA-A02:03	LLPGMSCSVQV	0.9923	0.6928	1.9055	65.1	1.4031	146.61	1/888	1/7086
INDEL	Breast	PROM1_R77Kfs*20	HLA-C07:02	YRRHMNPKL	0.7899	0.7526	0.3925	81	0.0418	1.6	1/888	1/7086
INDEL	Breast	PROM1_R77Kfs*20	HLA-C07:02	RRHMNPKLI	0.7991	0.7381	0.4382	330.5	0.2189	1.6	1/888	1/7086
INDEL	Breast	PROM1_R77Kfs*20	HLA-B39:01	RHMNPKLIM	0.998	0.8503	0.4456	188.6	0.2013	1.6	1/888	1/7086
INDEL	Breast	PROM1_R77Kfs*20	HLA-C07:02	RHMNPKLIM	0.9708	0.7604	0.2428	407.9	0.2686	1.6	1/888	1/7086
INDEL	Breast	TUBGCP5_A961Gfs*26	HLA-A02:03	RLAGRPGHL	0.9807	0.7424	0.3698	50	1.1594	5.56	1/888	1/7086
INDEL	Breast	KIRREL_E685_Y701del	HLA-C03:02	TSQLSYPTY	0.875	0.9506	0.7415	497.1	1.4518	8.33	1/888	1/7086
INDEL	Breast	KIRREL_E685_Y701del	HLA-C03:02	LSYPTYRLGY	0.979	0.8985	0.3168	146.8	0.5946	8.33	1/888	1/7086
INDEL	Breast	RFC1_E246Sfs*14	HLA-C03:02	NVFICPSQF	0.9652	0.9413	0.7945	213.6	0.8023	29.38	1/888	1/7086
INDEL	Breast	TRIM36_N657Kfs*14	HLA-C03:02	KSSPYANKY	0.8037	0.9064	0.0948	315.2	1.0748	4.93	1/888	1/7086
INDEL	Breast	TRIM36_N657Kfs*14	HLA-B58:01	KSSPYANKYW	0.9994	0.5645	0.0226	6.1	0.0224	4.93	1/888	1/7086
INDEL	Breast	GMNN_E190Nfs*6	HLA-B58:01	DSLVEDSNW	0.9247	0.9295	1.2725	457.1	1.3468	27.61	1/888	1/7086
INDEL	Breast	SERPINE1_L98Hfs*16	HLA-C03:02	MAPAHPASV	0.9962	0.9802	0.3542	108.3	0.4763	41.69	1/888	1/7086
INDEL	Breast	SERPINE1_L98Hfs*16	HLA-C03:02	SVQGAHGAM	0.9597	0.9778	0.9203	192.9	0.7495	41.69	1/888	1/7086
INDEL	Breast	MTA2_C44Sfs*9	HLA-B58:01	VSFPAQGHF	0.981	0.8364	0.2102	48.2	0.2788	67.87	1/888	1/7086
INDEL	Breast	MTA2_C44Sfs*9	HLA-C03:02	VSFPAQGHF	0.9954	0.983	0.2856	33.1	0.1566	67.87	1/888	1/7086
INDEL	Breast	ZNF613_I281Nfs*164	HLA-C03:02	FIQERSHIY	0.9394	0.9662	0.0427	145.7	0.5916	15.01	1/888	1/7086
INDEL	Breast	ZNF613_I281Nfs*164	HLA-C03:02	LGSLIIREF	0.9978	0.9522	0.1915	446.7	1.3544	15.01	1/888	1/7086
INDEL	Breast	ZNF613_I281Nfs*164	HLA-C03:02	HSAGNHSSM	0.9987	0.9668	0.7286	19.4	0.0831	15.01	1/888	1/7086
INDEL	Breast	ZNF613_I281Nfs*164	HLA-C03:02	HSSMHIRKL	0.9745	0.9474	0.1196	475.1	1.4115	15.01	1/888	1/7086
INDEL	Breast	ZNF613_I281Nfs*164	HLA-C03:02	LTQERSHIY	0.8424	0.9612	0.23	474.7	1.4107	15.01	1/888	1/7086
INDEL	Breast	ZNF613_I281Nfs*164	HLA-C03:02	ASFRREISL	0.9887	0.9693	0.1354	392	1.2389	15.01	1/888	1/7086
INDEL	Breast	ZNF613_I281Nfs*164	HLA-C03:02	FILEKNPIY	0.7607	0.9551	0.1465	86.7	0.4033	15.01	1/888	1/7086
INDEL	Breast	ZNF613_I281Nfs*164	HLA-B58:01	SSKRATSLF	0.9841	0.9018	0.7749	363	1.168	15.01	1/888	1/7086
INDEL	Breast	ZNF613_I281Nfs*164	HLA-C03:02	SSKRATSLF	0.9866	0.9826	0.9687	476.7	1.4146	15.01	1/888	1/7086
INDEL	Breast	ZNF613_I281Nfs*164	HLA-C03:02	SLFIDVLTL	0.7385	0.9769	0.8951	303.7	1.0454	15.01	1/888	1/7086
INDEL	Breast	ZNF613_I281Nfs*164	HLA-C03:02	LTLERNPMY	0.5566	0.9659	0.5741	321.4	1.0901	15.01	1/888	1/7086
INDEL	Breast	ZNF613_I281Nfs*164	HLA-C03:02	YAMNVGKAS	0.8908	0.9547	1.3988	266.4	0.9484	15.01	1/888	1/7086
INDEL	Breast	ZNF613_I281Nfs*164	HLA-C03:02	YAVIVEKASF	0.9998	0.9758	0.1418	257.3	0.9239	15.01	1/888	1/7086
INDEL	Breast	ZNF613_I281Nfs*164	HLA-C03:02	YAMNVGKASA	0.9932	0.9423	0.8108	417.4	1.2917	15.01	1/888	1/7086
INDEL	Breast	ZNF613_I281Nfs*164	HLA-B58:01	RSLGSLIIREF	0.9994	0.86	0.1448	111.8	0.5135	15.01	1/888	1/7086
INDEL	Breast	TECPR2_R1115Vfs*99	HLA-B07:05	APMPPARM	0.9997	0.536	1.1888	81.5	0.2984	9.8	1/888	1/7086
INDEL	Breast	TECPR2_R1115Vfs*99	HLA-B07:05	LPRRKEASC	0.99	0.5652	1.584	134.8	0.4172	9.8	1/888	1/7086
INDEL	Breast	TECPR2_R1115Vfs*99	HLA-B07:05	SPRAAPRAC	0.9926	0.5423	0.5924	14.9	0.0562	9.8	1/888	1/7086
INDEL	Breast	TECPR2_R1115Vfs*99	HLA-B07:05	APMPPARMRC	0.9886	0.547	1.418	283.7	0.6776	9.8	1/888	1/7086
INDEL	Breast	TECPR2_R1115Vfs*99	HLA-B07:05	SPRAAPRACT	0.9907	0.5514	1.2367	120.8	0.3882	9.8	1/888	1/7086
INDEL	Breast	TECPR2_R1115Vfs*99	HLA-B07:05	APRACTGPGW	0.9808	0.7982	1.3658	181.4	0.5068	9.8	1/888	1/7086
INDEL	Breast	COPS3_D344Pfs*49	HLA-C07:02	RRTVWSVSM	0.942	0.9563	0.1793	91.3	0.0498	48.57	1/888	1/7086
INDEL	Breast	COPS3_D344Pfs*49	HLA-C15:05	RTVWSVSMI	0.9983	0.9501	0.4916	214.4	0.1302	48.57	1/888	1/7086
INDEL	Breast	COPS3_D344Pfs*49	HLA-C15:05	ITQPCFITL	0.9991	0.9158	0.1641	414.8	0.2762	48.57	1/888	1/7086
INDEL	Breast	FOSB_P242Rfs*35	HLA-B07:05	RPAKTHPPT	0.996	0.633	0.9549	24.8	0.1012	59.41	1/888	1/7086
INDEL	Breast	CDH1_T627Hfs*36	HLA-B40:06	GECQLDHSV	0.9986	0.5782	0.0601	312.4	0.2118	20.56	1/888	1/7086
INDEL	Breast	APMAP_Q24Rfs*15	HLA-B57:01	RTAAPLAAEF	0.9997	0.989	0.0848	63.1	0.1659	406.3	1/888	1/7086
INDEL	Breast	MKS1_R312Gfs*16	HLA-B07:05	VPGALGPAL	0.9991	0.5018	0.3332	10.4	0.0305	33.4	1/888	1/7086
INDEL	Breast	MKS1_R312Gfs*16	HLA-B07:05	TVPGALGPAL	0.8623	0.685	1.7612	76.7	0.283	33.4	1/888	1/7086
INDEL	Breast	MKS1_L311delinsPRVRTEV	HLA-B07:05	APRVRTEV	0.9998	0.5704	0.5077	50.9	0.1949	33.4	1/888	1/7086
INDEL	Breast	MKS1_L311delinsPRVRTEV	HLA-C15:05	MTVPGAPRV	0.9992	0.9648	0.2446	131.2	0.0733	33.4	1/888	1/7086
INDEL	Breast	ZNF184_S262Vfs*5	HLA-C03:02	KAFSRVKTL	0.9925	0.9377	0.0441	45.3	0.2214	16.92	1/888	1/7086
INDEL	Breast	ZNF184_S262Vfs*5	HLA-C03:04	KAFSRVKTL	0.9971	0.9801	0.037	35.2	0.1606	16.92	1/888	1/7086
INDEL	Breast	CAMSAP2_Y314Lfs*6	HLA-C15:05	FTLEDMLLL	0.9953	0.8823	0.1448	87.5	0.0377	67.46	2/888	2/7086
INDEL	Breast	CAMSAP2_Y314Lfs*6	HLA-C15:05	FTLEDMLLL	0.9953	0.8823	0.1448	87.5	0.0377	67.46	2/888	2/7086
INDEL	Breast	MAP10_H51Ffs*34	HLA-B15:02	ITQKTFTTY	0.9964	0.7355	0.0226	163.8	0.2766	12.52	2/888	2/7086
INDEL	Breast	MAP10_H51Ffs*34	HLA-B15:02	ITQKTFTTY	0.9964	0.7355	0.0226	163.8	0.2766	12.52	2/888	2/7086
INDEL	Breast	MAP10_H51Ffs*34	HLA-B15:02	TITQKTFTTY	0.9915	0.8224	0.2138	278.7	0.4563	12.52	2/888	2/7086
INDEL	Breast	MAP10_H51Ffs*34	HLA-B15:02	TITQKTFTTY	0.9915	0.8224	0.2138	278.7	0.4563	12.52	2/888	2/7086
INDEL	Breast	GATA3_H423Afs*84	HLA-A02:03	MLTTPTPMA	0.9721	0.6288	0.4061	102.2	1.941	1321.11	1/888	1/7086
INDEL	Breast	GATA3_H423Afs*84	HLA-A02:03	PMAPAIQPV	0.9889	0.7621	0.3217	32.5	0.8144	1321.11	1/888	1/7086
INDEL	Breast	GATA3_H423Afs*84	HLA-C03:02	MAPAIQPVL	0.9979	0.9866	0.0686	69.2	0.3367	1321.11	1/888	1/7086
INDEL	Breast	GATA3_H423Afs*84	HLA-B58:01	MAPAIQPVLW	0.9994	0.9925	0.1227	5.1	0.0166	1321.11	2/888	2/7086
INDEL	Breast	GATA3_H423Afs*84	HLA-B58:01	PMAPAIQPVLW	0.9954	0.9808	1.2899	80.9	0.4102	1321.11	2/888	2/7086
INDEL	Breast	RBM39_F395Cfs*13	HLA-C03:02	GAVAEFSCY	0.8376	0.9754	0.3736	378.3	1.2088	83.66	1/888	1/7086
INDEL	Breast	RBM39_F395Cfs*13	HLA-C03:02	FGAVAEFSCY	0.9434	0.9807	1.584	337.6	1.1261	83.66	1/888	1/7086
INDEL	Breast	ZBTB21_I8Sfs*10	HLA-C03:02	YSTLHTPF	0.9999	0.9284	0.3974	227.9	0.844	5.2	1/888	1/7086
INDEL	Breast	ZBTB21_I8Sfs*10	HLA-C03:02	YSTLHTPFL	0.9962	0.9372	0.1448	51.3	0.2469	5.2	1/888	1/7086
INDEL	Breast	DIRAS1_S87Qfs*36	HLA-C03:04	VAGGAGAHL	0.9988	0.9911	0.2482	134	0.4371	20.79	1/888	1/7086
INDEL	Breast	AP1B1_Y824Tfs*77	HLA-A11:01	AATSSLSPR	0.9928	0.5265	0.6095	148.1	0.8108	61.72	1/888	1/7086
INDEL	Breast	AP1B1_Y824Tfs*77	HLA-A11:01	RAATSSLSPR	0.9747	0.5299	0.5829	195.4	0.9861	61.72	1/888	1/7086
INDEL	Breast	GAREML_S592Rfs*182	HLA-B56:04	PPFWGLTPL	0.7808	0.6606	0.8024	428.5	0.4628	4.76	1/888	1/7086
INDEL	Breast	GAREML_S592Rfs*182	HLA-B56:04	TPLLRPTTA	0.9311	0.9066	0.0166	388.5	0.4273	4.76	1/888	1/7086
INDEL	Breast	GAREML_S592Rfs*182	HLA-B56:04	LLRPTTAAL	0.5508	0.7491	1.0239	479.4	0.5042	4.76	1/888	1/7086
INDEL	Breast	GAREML_S592Rfs*182	HLA-C07:01	LRPTTAALL	0.991	0.6063	0.3445	260.3	0.0946	4.76	1/888	1/7086
INDEL	Breast	GAREML_S592Rfs*182	HLA-A02:01	ALLYSSPHI	0.9849	0.5055	0.2268	37.7	0.4926	4.76	1/888	1/7086
INDEL	Breast	GAREML_S592Rfs*182	HLA-C07:01	LRLELSTLF	0.999	0.8136	0.4246	158.3	0.0616	4.76	1/888	1/7086
INDEL	Breast	GAREML_S592Rfs*182	HLA-B56:04	FPGLPTPQA	0.9815	0.9285	0.0875	150	0.1939	4.76	1/888	1/7086
INDEL	Breast	GAREML_S592Rfs*182	HLA-A02:01	LLGPEPPRV	0.9976	0.8189	0.0096	26.4	0.3602	4.76	1/888	1/7086
INDEL	Breast	GAREML_S592Rfs*182	HLA-A02:01	RVLWLPLAL	0.9458	0.6352	0.4277	175.1	1.5155	4.76	1/888	1/7086
INDEL	Breast	GAREML_S592Rfs*182	HLA-A24:02	LWLPLALRI	0.9888	0.8667	0.2089	113.4	0.233	4.76	1/888	1/7086
INDEL	Breast	GAREML_S592Rfs*182	HLA-B56:04	IPLSWGRAV	0.9598	0.6538	0.1242	47.1	0.0597	4.76	1/888	1/7086
INDEL	Breast	GAREML_S592Rfs*182	HLA-A02:01	VLQSLSCCV	0.9509	0.7622	0.6949	66.8	0.7995	4.76	1/888	1/7086
INDEL	Breast	GAREML_S592Rfs*182	HLA-C01:02	LAPPRPLSL	0.9883	0.9748	0.0383	237.9	0.0091	4.76	1/888	1/7086
INDEL	Breast	GAREML_S592Rfs*182	HLA-B56:04	TPLLRPTTAA	0.8696	0.9253	0.3769	433.9	0.4673	4.76	1/888	1/7086
INDEL	Breast	GAREML_S592Rfs*182	HLA-A02:01	ALLRLELSTL	0.9495	0.5569	0.7058	151.5	1.3911	4.76	1/888	1/7086
INDEL	Breast	GAREML_S592Rfs*182	HLA-B56:04	FPGLPTPQAL	0.9838	0.7878	0.3685	29.7	0.0345	4.76	1/888	1/7086
INDEL	Breast	GAREML_S592Rfs*182	HLA-A02:01	CLLGPEPPRV	0.9945	0.9105	0.4491	158.7	1.4311	4.76	1/888	1/7086
INDEL	Breast	GAREML_S592Rfs*182	HLA-B56:04	LPLALRIPQA	0.7967	0.8761	0.3685	236.3	0.2819	4.76	1/888	1/7086
INDEL	Breast	GAREML_S592Rfs*182	HLA-B56:04	TPLLRPTTAAL	0.9832	0.7621	0.5347	308.7	0.3555	4.76	1/888	1/7086
INDEL	Breast	GAREML_G593Afs*178	HLA-B56:04	APFWGLTPL	0.9707	0.72	0.2352	14.5	0.0113	4.76	1/888	1/7086
INDEL	Breast	GAREML_G593Afs*178	HLA-B56:04	TPLLRPTTA	0.9311	0.9066	0.0166	388.5	0.4273	4.76	1/888	1/7086
INDEL	Breast	GAREML_G593Afs*178	HLA-B56:04	LLRPTTAAL	0.5508	0.7491	1.0239	479.4	0.5042	4.76	1/888	1/7086
INDEL	Breast	GAREML_G593Afs*178	HLA-C07:01	LRPTTAALL	0.991	0.6063	0.3445	260.3	0.0946	4.76	1/888	1/7086
INDEL	Breast	GAREML_G593Afs*178	HLA-A02:01	ALLYSSPHI	0.9849	0.5055	0.2268	37.7	0.4926	4.76	1/888	1/7086
INDEL	Breast	GAREML_G593Afs*178	HLA-C07:01	LRLELSTLF	0.999	0.8136	0.4246	158.3	0.0616	4.76	1/888	1/7086
INDEL	Breast	GAREML_G593Afs*178	HLA-B56:04	FPGLPTPQA	0.9815	0.9285	0.0875	150	0.1939	4.76	1/888	1/7086
INDEL	Breast	GAREML_G593Afs*178	HLA-A02:01	LLGPEPPRV	0.9976	0.8189	0.0096	26.4	0.3602	4.76	1/888	1/7086
INDEL	Breast	GAREML_G593Afs*178	HLA-A02:01	RVLWLPLAL	0.9458	0.6352	0.4277	175.1	1.5155	4.76	1/888	1/7086
INDEL	Breast	GAREML_G593Afs*178	HLA-A24:02	LWLPLALRI	0.9888	0.8667	0.2089	113.4	0.233	4.76	1/888	1/7086
INDEL	Breast	GAREML_G593Afs*178	HLA-B56:04	IPLSWGRAV	0.9598	0.6538	0.1242	47.1	0.0597	4.76	1/888	1/7086
INDEL	Breast	GAREML_G593Afs*178	HLA-A02:01	VLQSLSCCV	0.9509	0.7622	0.6949	66.8	0.7995	4.76	1/888	1/7086
INDEL	Breast	GAREML_G593Afs*178	HLA-C01:02	LAPPRPLSL	0.9883	0.9748	0.0383	237.9	0.0091	4.76	1/888	1/7086
INDEL	Breast	GAREML_G593Afs*178	HLA-B56:04	APFWGLTPLL	0.8574	0.687	0.1625	111.3	0.1492	4.76	1/888	1/7086
INDEL	Breast	GAREML_G593Afs*178	HLA-B56:04	TPLLRPTTAA	0.8696	0.9253	0.3769	433.9	0.4673	4.76	1/888	1/7086
INDEL	Breast	GAREML_G593Afs*178	HLA-A02:01	ALLRLELSTL	0.9495	0.5569	0.7058	151.5	1.3911	4.76	1/888	1/7086
INDEL	Breast	GAREML_G593Afs*178	HLA-B56:04	FPGLPTPQAL	0.9838	0.7878	0.3685	29.7	0.0345	4.76	1/888	1/7086
INDEL	Breast	GAREML_G593Afs*178	HLA-A02:01	CLLGPEPPRV	0.9945	0.9105	0.4491	158.7	1.4311	4.76	1/888	1/7086
INDEL	Breast	GAREML_G593Afs*178	HLA-B56:04	LPLALRIPQA	0.7967	0.8761	0.3685	236.3	0.2819	4.76	1/888	1/7086
INDEL	Breast	GAREML_G593Afs*178	HLA-B56:04	TPLLRPTTAAL	0.9832	0.7621	0.5347	308.7	0.3555	4.76	1/888	1/7086
INDEL	Breast	SF3B4_R354Pfs*132	HLA-C12:03	ISHGSPRSY	0.669	0.9578	0.0299	53.2	0.2376	137.27	1/888	1/7086
INDEL	Breast	SF3B4_R354Pfs*132	HLA-C12:03	YAWTSSTDA	0.567	0.9723	1.9129	495.9	1.5401	137.27	1/888	1/7086
INDEL	Breast	SF3B4_R354Pfs*132	HLA-C12:03	MGMPPPRASI	0.9983	0.9825	1.1888	399.9	1.3389	137.27	1/888	1/7086
INDEL	Breast	SF3B4_R354Pfs*132	HLA-A11:01	ASIRISHGSPR	0.9913	0.6815	1.224	259.2	1.1909	137.27	1/888	1/7086
INDEL	Breast	CSPG4_T862Rfs*88	HLA-C12:03	GARTPSVSV	0.8829	0.9606	0.2913	375.1	1.2818	23.58	1/888	1/7086
INDEL	Breast	CSPG4_T862Rfs*88	HLA-C12:03	HSIPSPSTL	0.9975	0.9881	0.0583	10.5	0.0276	23.58	1/888	1/7086
INDEL	Breast	CSPG4_T862Rfs*88	HLA-B35:03	IPSPSTLVV	0.9671	0.6509	0.0299	144.5	0.0296	23.58	1/888	1/7086
INDEL	Breast	CSPG4_T862Rfs*88	HLA-B35:03	SPMSSSWCL	0.9509	0.6494	0.0995	88.9	0.0155	23.58	1/888	1/7086
INDEL	Breast	CSPG4_T862Rfs*88	HLA-C12:03	MSSSWCLRV	0.7866	0.9902	0.8108	347	1.2072	23.58	1/888	1/7086
INDEL	Breast	CSPG4_T862Rfs*88	HLA-C12:03	SSSWCLRVV	0.8921	0.9859	0.6911	443.7	1.4321	23.58	1/888	1/7086
INDEL	Breast	CSPG4_T862Rfs*88	HLA-B08:01	LRVVRVSSL	0.9747	0.6186	0.1212	114.7	0.2027	23.58	1/888	1/7086
INDEL	Breast	CSPG4_T862Rfs*88	HLA-C07:01	LRVVRVSSL	0.9967	0.735	0.033	107.9	0.0416	23.58	1/888	1/7086
INDEL	Breast	CSPG4_T862Rfs*88	HLA-C12:03	LRVVRVSSL	0.5809	0.9943	1.0091	436	1.4153	23.58	1/888	1/7086
INDEL	Breast	CSPG4_T862Rfs*88	HLA-C12:03	RVVRVSSLL	0.8632	0.9896	1.4863	147.9	0.6392	23.58	1/888	1/7086
INDEL	Breast	CSPG4_T862Rfs*88	HLA-C12:03	VSSLLTTSL	0.9942	0.9899	0.5686	68.3	0.3224	23.58	1/888	1/7086
INDEL	Breast	CSPG4_T862Rfs*88	HLA-C12:03	TSLSRVSTV	0.9797	0.9776	0.3057	58	0.2663	23.58	1/888	1/7086
INDEL	Breast	CSPG4_T862Rfs*88	HLA-C12:03	VSTVPATSM	0.9713	0.9687	0.4196	157.9	0.6744	23.58	1/888	1/7086
INDEL	Breast	CSPG4_T862Rfs*88	HLA-C07:01	MRSWSGPAM	0.9948	0.7001	0.5279	63.1	0.0196	23.58	1/888	1/7086
INDEL	Breast	CSPG4_T862Rfs*88	HLA-C12:03	VTYGARTPSV	0.998	0.9782	0.8723	351.3	1.219	23.58	1/888	1/7086
INDEL	Breast	CSPG4_T862Rfs*88	HLA-B08:01	CLRVVRVSSL	0.9939	0.5809	1.202	22	0.0373	23.58	1/888	1/7086
INDEL	Breast	TP53_A138Cfs*27	HLA-B08:01	IPHPRPAPA	0.995	0.5052	0.2636	398.2	0.6322	23.86	1/888	1/7086
INDEL	Breast	KIAA0141_T90Pfs*24	HLA-A24:02	SWGPCWPCSW	0.9806	0.9077	0.6818	161.6	0.3058	16.99	2/888	2/7086
INDEL	Breast	KIAA0141_T90Pfs*24	HLA-A24:02	SWGPCWPCSW	0.9806	0.9077	0.6818	161.6	0.3058	16.99	2/888	2/7086
INDEL	Breast	PPP1R15A_S660Lfs*26	HLA-B56:01	LPWTSVGGV	0.9899	0.6125	0.4529	156.7	0.1175	75.48	1/888	1/7086
INDEL	Breast	PPP1R15A_S660Lfs*26	HLA-B56:01	LPWTSVGGVA	0.9868	0.8606	0.1168	47.4	0.0297	75.48	1/888	1/7086
INDEL	Breast	OBSCN_Y6085Lfs*75	HLA-A30:01	RGRPVHLHH	0.9601	0.8814	1.2692	125.8	0.6157	4.18	1/888	1/7086
INDEL	Breast	MYCT1_F29Sfs*28	HLA-A30:01	RIKLLFSTY	0.95	0.6145	0.1086	59.9	0.3073	11.12	1/888	2/7086
INDEL	Breast	GATA3_D335Gfs*17	HLA-B35:01	WALLQASQY	0.9946	0.7042	0.4061	27.2	0.1088	1482.01	2/888	2/7086
INDEL	Breast	KIAA1549L_L1107Ffs*59	HLA-B35:01	YPVQREAF	0.9851	0.8901	0.2712	236.9	0.5533	3.58	1/888	1/7086
INDEL	Breast	KIAA1549L_L1107Ffs*59	HLA-A30:01	RFKRATTFR	0.984	0.7928	0.6018	34.6	0.1795	3.58	1/888	1/7086
INDEL	Breast	KIAA1549L_L1107Ffs*59	HLA-A30:01	RATTFRVSL	0.9829	0.8177	0.3925	171.6	0.8269	3.58	1/888	1/7086
INDEL	Breast	KIAA1549L_L1107Ffs*59	HLA-B35:01	GPSGADLLY	0.9788	0.7499	0.3398	45	0.1735	3.58	1/888	1/7086
INDEL	Breast	KIAA1549L_L1107Ffs*59	HLA-A30:01	AIRWCESSGK	0.9868	0.9582	1.7785	172.3	0.8305	3.58	1/888	1/7086
INDEL	Breast	KIAA1549L_L1107Ffs*59	HLA-A11:01	AIRWCESSGK	0.9742	0.7611	0.8698	245.8	1.1503	3.58	1/888	1/7086
INDEL	Breast	RAN_R110Qfs*22	HLA-A30:01	ATKWILRTG	0.9458	0.9263	1.8393	120.4	0.5898	123.74	1/888	1/7086
INDEL	Breast	RAN_R110Qfs*22	HLA-A30:01	ATKWILRTGK	0.9969	0.8709	0.2543	36	0.1868	123.74	1/888	1/7086
INDEL	Breast	RAN_R110Qfs*22	HLA-A30:01	KTSPLCCVATK	0.9984	0.7965	0.6891	349.1	1.5269	123.74	1/888	1/7086
INDEL	Breast	PNKP_T178Wfs*43	HLA-A30:01	RSSPHALGR	0.9964	0.912	0.2868	172.8	0.8332	19.04	1/888	1/7086
INDEL	Breast	PNKP_T178Wfs*43	HLA-B35:01	SPHALGRSF	0.9808	0.7634	0.0142	93.4	0.3044	19.04	1/888	1/7086
INDEL	Breast	PNKP_T178Wfs*43	HLA-B35:01	HALGRSFPL	0.979	0.9388	1.0524	74.4	0.2575	19.04	1/888	1/7086
INDEL	Breast	PNKP_T178Wfs*43	HLA-A30:01	RSFPLAPVT	0.9608	0.9783	1.7317	202.2	0.9661	19.04	1/888	1/7086
INDEL	Breast	DHX38_R1224Lfs*26	HLA-B07:02	TPRRTPAL	0.9999	0.6484	0.2778	18	0.0622	46.51	1/888	1/7086
INDEL	Breast	DHX38_R1224Lfs*26	HLA-C07:02	MTPRRTPAL	0.842	0.9605	0.6616	496.5	0.3269	46.51	1/888	1/7086
INDEL	Breast	DHX38_R1224Lfs*26	HLA-B07:02	TPRRTPALV	0.9994	0.6839	0.3367	41.3	0.1457	46.51	1/888	1/7086
INDEL	Breast	DHX38_R1224Lfs*26	HLA-B07:02	TPRRTPALVC	0.9921	0.7798	0.9152	289.8	0.6046	46.51	1/888	1/7086
INDEL	Breast	MICU3_T143Hfs*13	HLA-C07:01	GRGDFVYLL	0.9961	0.5244	0.0045	479.2	0.1637	1.95	1/888	1/7086
INDEL	Breast	MICU3_T143Hfs*13	HLA-A02:01	HLGRGDFVYL	0.9128	0.5012	1.0474	185	1.5675	1.95	1/888	1/7086
INDEL	Breast	EDAR_N34_E35del	HLA-B15:01	AEYSNCGEY	0.9769	0.7231	0.458	311.2	1.2696	1.21	1/888	1/7086
INDEL	Breast	SPEG_E1033Lfs*9	HLA-A02:01	KLLLTSVHL	0.9654	0.7085	0.3413	52.7	0.6585	13.5	1/888	1/7086
INDEL	Breast	LATS1_E920Afs*9	HLA-A02:01	YIAPANRIHTV	0.9911	0.5711	0.2942	77.9	0.8913	16.18	1/888	1/7086
INDEL	Breast	FANK1_K19Afs*49	HLA-B15:01	FIRDMQRSM	0.9966	0.8522	0.6837	278.4	1.17	4.4	1/888	1/7086
INDEL	Breast	FANK1_K19Afs*49	HLA-C03:04	FIRDMQRSM	0.9915	0.9821	0.3698	231.6	0.6181	4.4	1/888	1/7086
INDEL	Breast	FANK1_K19Afs*49	HLA-C07:02	IRDMQRSML	0.9411	0.931	0.9297	378.3	0.2494	4.4	1/888	1/7086
INDEL	Breast	FANK1_K19Afs*49	HLA-B15:01	MQRSMLLKV	0.9211	0.8146	0.4825	212.4	0.9562	4.4	1/888	1/7086
INDEL	Breast	ALCAM_K153Sfs*34	HLA-B35:03	MAISHGTGM	0.9598	0.915	0.4475	347.2	0.0561	92.77	1/888	2/7086
INDEL	Breast	ALCAM_K153Sfs*34	HLA-C12:03	MAISHGTGM	0.9874	0.9842	0.3639	10.2	0.0266	92.77	1/888	2/7086
INDEL	Breast	ALCAM_K153Sfs*34	HLA-A03:01	ISHGTGMEK	0.9652	0.5533	0.7329	342.7	0.9367	92.77	1/888	2/7086
INDEL	Breast	ALCAM_K153Sfs*34	HLA-C12:03	TAFQKTVIQM	0.9989	0.9869	0.4078	355	1.2291	92.77	1/888	2/7086
INDEL	Breast	ALCAM_K153Sfs*34	HLA-A03:01	AISHGTGMEK	0.9946	0.6999	0.458	68.5	0.259	92.77	1/888	2/7086
INDEL	Breast	PCDH7_S686Lfs*47	HLA-B27:05	SRLWMGEIL	0.9988	0.9308	0.5245	103.9	0.347	4.91	1/888	1/7086
INDEL	Breast	PCDH7_S686Lfs*47	HLA-A02:01	WMGEILPDL	0.9889	0.7083	0.2942	13.2	0.1605	4.91	1/888	1/7086
INDEL	Breast	PCDH7_S686Lfs*47	HLA-A02:01	RLWMGEILPDL	0.9966	0.7042	1.9897	74.5	0.8646	4.91	1/888	1/7086
INDEL	Breast	TSPAN5_N142Kfs*19	HLA-B27:05	HRLHPGILA	0.9995	0.8827	0.8698	196.5	0.6084	29.06	1/888	1/7086
INDEL	Breast	TSPAN5_N142Kfs*19	HLA-A02:01	RLHPGILAV	0.9965	0.7162	0.0017	12.9	0.1554	29.06	1/888	1/7086
INDEL	Breast	TSPAN5_N142Kfs*19	HLA-C12:03	RLHPGILAV	0.9601	0.9942	0.0452	96.6	0.4357	29.06	1/888	1/7086
INDEL	Breast	TSPAN5_N142Kfs*19	HLA-B27:05	HRLHPGILAV	0.9999	0.7524	0.3386	42.2	0.1171	29.06	1/888	1/7086
INDEL	Breast	TSPAN5_N142Kfs*19	HLA-A02:01	RLHPGILAVL	0.982	0.661	0.167	250.8	1.9038	29.06	1/888	1/7086
INDEL	Breast	TSPAN5_N142Kfs*19	HLA-B27:05	HRLHPGILAVL	1	0.7321	0.3657	108.8	0.3631	29.06	1/888	1/7086
INDEL	Breast	PNISR_E498Sfs*85	HLA-C12:03	LVVVVPVAI	0.8518	0.9824	1.0837	261.3	0.9872	32.49	1/888	1/7086
INDEL	Breast	PNISR_E498Sfs*85	HLA-C12:03	VVPVAIAEL	0.987	0.9671	0.0558	193.9	0.8035	32.49	1/888	1/7086
INDEL	Breast	PNISR_E498Sfs*85	HLA-C12:03	VAIAELVVL	0.9984	0.9742	0.0778	58.7	0.2707	32.49	1/888	1/7086
INDEL	Breast	PNISR_E498Sfs*85	HLA-A02:01	AIAELVVLV	0.9987	0.566	0.0031	9.6	0.1118	32.49	1/888	4/7086
INDEL	Breast	PNISR_E498Sfs*85	HLA-A02:01	VLSLALHTV	0.9873	0.7624	0.0154	17.1	0.2201	32.49	1/888	4/7086
INDEL	Breast	PNISR_E498Sfs*85	HLA-C12:03	LSLALHTVL	0.9967	0.9953	0.4096	73	0.3424	32.49	1/888	1/7086
INDEL	Breast	PNISR_E498Sfs*85	HLA-A02:01	SLALHTVLA	0.9546	0.5988	0.3445	141	1.3222	32.49	1/888	4/7086
INDEL	Breast	PNISR_E498Sfs*85	HLA-A02:01	ALHTVLAQV	0.9945	0.6779	0.0031	18.5	0.249	32.49	1/888	4/7086
INDEL	Breast	PNISR_E498Sfs*85	HLA-C12:03	HTVLAQVVV	0.7632	0.9788	1.2862	450.9	1.4476	32.49	1/888	1/7086
INDEL	Breast	PNISR_E498Sfs*85	HLA-C12:03	TVLAQVVVV	0.707	0.9843	0.3914	253.5	0.9692	32.49	1/888	1/7086
INDEL	Breast	PNISR_E498Sfs*85	HLA-A02:01	VLAQVVVVL	0.9802	0.7214	0.1285	91.4	0.9995	32.49	1/888	4/7086
INDEL	Breast	PNISR_E498Sfs*85	HLA-A02:01	VLLLGLLLL	0.9367	0.6984	0.5312	94.4	1.0209	32.49	1/888	4/7086
INDEL	Breast	PNISR_E498Sfs*85	HLA-A02:01	AIAELVVLVV	0.9975	0.6124	0.5347	68.7	0.8162	32.49	1/888	4/7086
INDEL	Breast	PNISR_E498Sfs*85	HLA-A02:01	VVLSLALHTV	0.9834	0.7429	0.3283	102.8	1.0762	32.49	1/888	4/7086
INDEL	Breast	PNISR_E498Sfs*85	HLA-A02:01	ALHTVLAQVV	0.9706	0.6224	1.1421	110.3	1.1254	32.49	1/888	4/7086
INDEL	Breast	PNISR_E498Sfs*85	HLA-A02:01	VLAQVVVVLL	0.9879	0.5749	0.6314	207.8	1.6869	32.49	1/888	4/7086
INDEL	Breast	PNISR_E498Sfs*85	HLA-A02:01	SLALHTVLAQV	0.9761	0.8096	1.0807	70.7	0.8336	32.49	1/888	4/7086
INDEL	Breast	SAMD3_K62Nfs*9	HLA-C12:03	LIKNTSRTL	0.9909	0.9883	0.6233	199.6	0.8222	1.9	1/888	1/7086
INDEL	Breast	PPP1R9A_R57Gfs*44	HLA-A02:01	NMAPMSTEL	0.9371	0.5025	0.1435	73.4	0.8555	13.59	1/888	2/7086
INDEL	Breast	PPP1R9A_R57Gfs*44	HLA-C12:03	NMAPMSTEL	0.9961	0.9769	0.348	203.5	0.8344	13.59	1/888	1/7086
INDEL	Breast	PPP1R9A_R57Gfs*44	HLA-C12:03	MSTELKTYL	0.9745	0.9844	0.1947	43.4	0.1875	13.59	1/888	1/7086
INDEL	Breast	PPP1R9A_R57Gfs*44	HLA-B27:05	CRWVWNPTR	0.9984	0.8918	0.8149	25.3	0.0505	13.59	1/888	1/7086
INDEL	Breast	PPP1R9A_R57Gfs*44	HLA-C12:03	WVWNPTRML	0.94	0.9771	1.473	108.9	0.483	13.59	1/888	1/7086
INDEL	Breast	PPP1R9A_R57Gfs*44	HLA-B27:05	TRMLQSLPK	0.9994	0.7186	0.4698	63.9	0.2113	13.59	1/888	1/7086
INDEL	Breast	PPP1R9A_R57Gfs*44	HLA-B27:05	CRWVWNPTRM	0.9998	0.9047	0.9079	25.8	0.0518	13.59	1/888	1/7086
INDEL	Breast	PPP1R9A_R57Gfs*44	HLA-B27:05	CRWVWNPTRML	0.9999	0.8624	0.9595	79.3	0.2639	13.59	1/888	1/7086
INDEL	Breast	GALNT12_S318Rfs*92	HLA-A02:01	RLWPTVFV	0.9978	0.577	0.9152	51.8	0.6486	1.68	1/888	1/7086
INDEL	Breast	GALNT12_S318Rfs*92	HLA-C12:03	FAVRNILNI	0.9775	0.988	0.0671	17.3	0.0575	1.68	1/888	1/7086
INDEL	Breast	GALNT12_S318Rfs*92	HLA-C12:03	FGEEKTSNF	0.7825	0.9901	0.7967	472.5	1.4925	1.68	1/888	1/7086
INDEL	Breast	GALNT12_S318Rfs*92	HLA-B35:03	FPLGSGSVV	0.9955	0.9632	0.0427	90.8	0.016	1.68	1/888	1/7086
INDEL	Breast	GALNT12_S318Rfs*92	HLA-C12:03	VGFWKHTHV	0.9403	0.9845	1.1117	332.6	1.1715	1.68	1/888	1/7086
INDEL	Breast	GALNT12_S318Rfs*92	HLA-C12:03	HTHVPMLAM	0.9546	0.9747	0.1014	30.5	0.1224	1.68	1/888	1/7086
INDEL	Breast	GALNT12_S318Rfs*92	HLA-C12:03	LAMFSPSKL	0.9936	0.9883	0.259	22.8	0.0853	1.68	1/888	1/7086
INDEL	Breast	GALNT12_S318Rfs*92	HLA-C12:03	ATRLWPTVF	0.7794	0.992	0.1448	215.2	0.8701	1.68	1/888	1/7086
INDEL	Breast	GALNT12_S318Rfs*92	HLA-C12:03	SSTTIATPV	0.9438	0.9813	0.879	219.2	0.8819	1.68	1/888	1/7086
INDEL	Breast	GALNT12_S318Rfs*92	HLA-B35:03	TPVPAWNLL	0.9664	0.9236	0.281	278.9	0.0481	1.68	1/888	1/7086
INDEL	Breast	GALNT12_S318Rfs*92	HLA-B35:03	VPAWNLLGM	0.947	0.7896	0.4646	186.6	0.0378	1.68	1/888	1/7086
INDEL	Breast	GALNT12_S318Rfs*92	HLA-B27:05	VRNILNIWGL	0.9997	0.9404	1.0978	64	0.2118	1.68	1/888	1/7086
INDEL	Breast	GALNT12_S318Rfs*92	HLA-A02:01	RLWPTVFVQL	0.9938	0.5553	0.0539	24.5	0.3361	1.68	1/888	1/7086
INDEL	Breast	GALNT12_S318Rfs*92	HLA-A02:01	GLFAVRNILNI	0.9836	0.5764	0.891	251.6	1.9075	1.68	1/888	1/7086
INDEL	Breast	ACY3_Q182Sfs*14	HLA-B27:05	HRVCCGLTF	0.9995	0.8663	0.5058	27.3	0.0559	2.42	1/888	1/7086
INDEL	Breast	LRP1_V3296Gfs*42	HLA-A02:01	QQWWLQQPV	0.9121	0.7267	0.8629	56	0.6903	27.44	1/888	1/7086
INDEL	Breast	LRP1_V3296Gfs*42	HLA-A02:01	WLQQPVPAV	0.979	0.8779	0.0618	16.3	0.2035	27.44	1/888	1/7086
INDEL	Breast	LRP1_V3296Gfs*42	HLA-B27:05	GRAQMCLPH	0.9965	0.5552	0.8444	139.9	0.461	27.44	1/888	1/7086
INDEL	Breast	LRP1_V3296Gfs*42	HLA-A02:01	AQMCLPHQL	0.9676	0.5764	0.1336	77.1	0.8849	27.44	1/888	1/7086
INDEL	Breast	LRP1_V3296Gfs*42	HLA-B27:05	QRWAHLCVQL	0.9999	0.6331	0.7415	12.6	0.0124	27.44	1/888	1/7086
INDEL	Breast	LRP1_V3296Gfs*42	HLA-B27:05	QRWAHLCVQLH	0.9999	0.5284	1.9612	173.7	0.5532	27.44	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-B27:05	RRMTRRTM	0.9998	0.5248	1.566	120.1	0.3975	7.56	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-B27:05	RRTMTTTK	0.9996	0.702	1.3493	364.4	0.9876	7.56	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-B27:05	RRTLLTKK	0.9997	0.8275	0.7415	218.6	0.6701	7.56	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-B27:05	RRTMTTTKM	0.9998	0.5422	0.4311	69.6	0.2315	7.56	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-C12:03	RTMTTTKMM	0.7485	0.9543	0.8087	85.4	0.3903	7.56	1/888	2/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-C12:03	MTTTKMMMM	0.8288	0.9633	0.8884	102.9	0.4606	7.56	1/888	2/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-B27:05	RRTKRRRRK	0.9818	0.6633	1.0116	346.6	0.9503	7.56	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-B27:05	RRMTMMTRR	0.9992	0.5182	0.4409	9.9	0.0093	7.56	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-C12:03	MTMMTRRTL	0.9774	0.9736	0.4698	14.7	0.0464	7.56	1/888	2/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-C12:03	TMMTRRTLL	0.9203	0.97	1.8985	337.3	1.1828	7.56	1/888	2/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-B27:05	TRRTLLTKK	0.9895	0.7555	0.6837	397.6	1.0513	7.56	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-C12:03	RTSAATKAL	0.9193	0.9721	0.6392	107.9	0.4794	7.56	1/888	2/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-C12:03	IQTPPGTSL	0.9936	0.9867	0.2122	194.1	0.8043	7.56	1/888	2/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-C12:03	LTPSRLAVL	0.9979	0.983	0.4213	115.8	0.5095	7.56	1/888	2/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-B27:05	SRLAVLAIW	0.9987	0.7688	0.5279	397.3	1.0507	7.56	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-B27:05	RRMTMMTRRT	0.9983	0.5205	0.9762	51.5	0.1627	7.56	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-B27:05	RRMTMMTRRTL	0.9999	0.6561	0.3736	15.2	0.0175	7.56	1/888	1/7086
INDEL	Breast	ZBTB7C_D132Tfs*90	HLA-B27:05	RRTLLTKKTCL	0.9998	0.5749	0.538	174.1	0.5541	7.56	1/888	1/7086
INDEL	Breast	CTIF_P82Hfs*77	HLA-B27:05	SRMAAKTTL	0.9998	0.8053	0.0201	53.4	0.1731	3.05	1/888	2/7086
INDEL	Breast	CTIF_P82Hfs*77	HLA-B27:05	HSRMAAKTTL	0.9848	0.8014	1.6818	62.3	0.2053	3.05	1/888	2/7086
INDEL	Breast	CTIF_P82Hfs*77	HLA-B27:05	SRMAAKTTLW	0.9999	0.547	0.0618	125.9	0.4168	3.05	1/888	2/7086
INDEL	Breast	ZNF160_M177Yfs*15	HLA-C12:03	QSAWSKLSF	0.9461	0.9906	0.6949	289.3	1.0607	30.58	1/888	1/7086
INDEL	Breast	ZNF160_M177Yfs*15	HLA-A02:01	KLYEQSAWSKL	0.9975	0.8839	0.1977	194.8	1.6184	30.58	1/888	1/7086
INDEL	Breast	RALGAPA2_S919Afs*24	HLA-C12:03	SIIAGGASL	0.9988	0.9898	0.0888	96.9	0.437	27.94	1/888	3/7086
INDEL	Breast	RALGAPA2_S919Afs*24	HLA-A02:01	IIAGGASLV	0.9775	0.6862	0.6191	214.2	1.719	27.94	2/888	3/7086
INDEL	Breast	RALGAPA2_S919Afs*24	HLA-C12:03	IIAGGASLV	0.9792	0.9921	1.2147	442.3	1.4292	27.94	1/888	3/7086
INDEL	Breast	RALGAPA2_S919Afs*24	HLA-C12:03	ASLVGTQTL	0.9825	0.9554	0.3268	184.3	0.7702	27.94	1/888	3/7086
INDEL	Breast	PPP2R3B_T389Hfs*70	HLA-C12:03	AAWTWTGTA	0.8495	0.9909	1.4904	491.5	1.5313	1.24	1/888	3/7086
INDEL	Breast	PPP2R3B_T389Hfs*70	HLA-B27:05	ARCWTWSSR	0.9986	0.7162	0.9642	217	0.6658	1.24	1/888	1/7086
INDEL	Breast	APH1B_Y21Cfs*40	HLA-C07:02	YHLPHRRSF	0.7434	0.9551	0.3217	46.7	0.019	14.46	1/888	1/7086
INDEL	Breast	APH1B_Y21Cfs*40	HLA-C07:02	YHLPHRRSFL	0.8788	0.9358	1.221	391.9	0.2583	14.46	1/888	1/7086
INDEL	Breast	APH1B_Y21Cfs*40	HLA-A02:01	LLVGVSTDFV	0.9912	0.5039	0.4865	39.1	0.5094	14.46	1/888	1/7086
INDEL	Breast	TMEM167B_W33Gfs*18	HLA-C03:04	FGVCFTKPL	0.9994	0.9902	0.6535	29	0.1277	102.77	1/888	1/7086
INDEL	Breast	PRMT5_E298_F300del	HLA-C03:04	YAKGYEDYL	0.998	0.9841	0.0904	79.1	0.3094	66.95	1/888	1/7086
INDEL	Breast	SCMH1_N497Ifs*56	HLA-A02:01	FVLGIVWPA	0.9879	0.5016	0.2227	2.6	0.0077	27.04	1/888	1/7086
INDEL	Breast	SCMH1_N497Ifs*56	HLA-A02:01	TLPQIPPTL	0.8927	0.8452	0.2071	246.8	1.8837	27.04	1/888	1/7086
INDEL	Breast	SCMH1_N497Ifs*56	HLA-B35:03	HPVASHQAL	0.9965	0.5807	0.0021	59.8	0.0097	27.04	1/888	1/7086
INDEL	Breast	SCYL1_W727Gfs*30	HLA-A30:01	RVQRQGRPL	0.9439	0.7435	1.1679	111.2	0.5505	80.78	1/888	1/7086
INDEL	Breast	SCYL1_W727Gfs*30	HLA-B07:02	RVQRQGRPL	0.9943	0.5058	0.651	37.8	0.1308	80.78	1/888	1/7086
INDEL	Breast	SCYL1_W727Gfs*30	HLA-A30:01	VQRQGRPLR	0.9295	0.6787	0.6333	187.9	0.9075	80.78	1/888	1/7086
INDEL	Breast	SCYL1_W727Gfs*30	HLA-A30:01	RVQRQGRPLR	0.9769	0.6891	1.0366	92.6	0.4645	80.78	1/888	1/7086
INDEL	Breast	SCYL1_W727Gfs*30	HLA-B07:02	WPRVQRQGRPL	0.9999	0.61	0.5999	11.1	0.0298	80.78	1/888	1/7086
INDEL	Breast	GPR82_Y273Lfs*8	HLA-C07:02	YSIFKPIFL	0.9864	0.9076	0.0523	225.8	0.1482	1.73	1/888	1/7086
INDEL	Breast	RC3H1_K907Nfs*62	HLA-B18:03	MENPFHLL	0.9979	0.7283	0.281	490.5	0.1732	16.13	1/888	1/7086
INDEL	Breast	RC3H1_K907Nfs*62	HLA-B07:02	APQGAPTNL	0.9992	0.7429	0.1272	34.1	0.1192	16.13	1/888	1/7086
INDEL	Breast	RC3H1_K907Nfs*62	HLA-B18:03	MENPFHLLR	0.9532	0.5933	0.9787	355.3	0.1233	16.13	1/888	1/7086
INDEL	Breast	RC3H1_K907Nfs*62	HLA-B07:02	APQGAPTNLL	0.9848	0.5702	0.1581	70.2	0.2254	16.13	1/888	1/7086
INDEL	Breast	HNRNPA1_Y312Sfs*39	HLA-B07:02	KPRWLWRF	0.9972	0.6796	1.6513	340.7	0.6682	498.1	1/888	1/7086
INDEL	Breast	HNRNPA1_Y312Sfs*39	HLA-A03:01	KLWPLWRWR	0.9578	0.7581	0.5512	356.4	0.9625	498.1	1/888	1/7086
INDEL	Breast	HNRNPA1_Y312Sfs*39	HLA-B07:02	WPLWRWRPI	0.9888	0.8743	1.0069	8.2	0.016	498.1	1/888	1/7086
INDEL	Breast	UBAP2_P916dup	HLA-C07:02	YSYTGLPPY	0.9508	0.8527	0.7945	439.6	0.2878	17.51	1/888	1/7086
INDEL	Breast	SPHK1_L11Pfs*29	HLA-B15:01	RQGQGLAAL	0.9878	0.9367	0.4718	122.4	0.6211	13.36	1/888	1/7086
INDEL	Breast	SPHK1_L11Pfs*29	HLA-B15:01	ALPESRAAPF	0.9994	0.899	0.6154	208.7	0.9435	13.36	1/888	1/7086
INDEL	Breast	ZNF814_R742Kfs*4	HLA-C12:03	RVHTGEKAL	0.906	0.9856	0.3822	440.4	1.425	2.51	1/888	1/7086
INDEL	Breast	MAP3K1_I1217Nfs*23	HLA-B35:01	YTRDSTRTY	0.8832	0.7344	0.1212	110.4	0.3405	133.07	1/888	1/7086
INDEL	Breast	ASH1L_E2148Nfs*18	HLA-B44:03	HEWVQCLNDF	0.9901	0.9118	0.6616	100	0.1156	10.66	1/888	1/7086
INDEL	Breast	GIGYF2_A223Vfs*56	HLA-B41:02	TEGFALAV	0.8045	0.6578	0.5999	204.7	0.6843	10.38	1/888	1/7086
INDEL	Breast	GIGYF2_A223Vfs*56	HLA-B44:03	IEMMNGVTEGF	0.9995	0.8693	0.5454	310.2	0.3092	10.38	1/888	1/7086
INDEL	Breast	FGA_R720Tfs*7	HLA-A23:01	DYLHLLTQTL	0.9277	0.5372	0.5245	379	0.872	10.71	2/888	2/7086
INDEL	Breast	FGA_R720Tfs*7	HLA-A23:01	DYLHLLTQTL	0.9277	0.5372	0.5245	379	0.872	10.71	2/888	2/7086
INDEL	Breast	ARMC1_I109Sfs*10	HLA-B44:03	SEIYDSSVL	0.9772	0.9331	0.1761	356	0.3435	19.38	1/888	1/7086
INDEL	Breast	ARMC1_I109Sfs*10	HLA-B44:03	SEIYDSSVLQY	0.9998	0.7176	0.0121	49.9	0.0563	19.38	1/888	1/7086
INDEL	Breast	KLRB1_L151Vfs*25	HLA-B44:03	LEVDKRLFF	0.9844	0.7551	0.0848	432.1	0.3918	5.22	1/888	1/7086
INDEL	Breast	KLRB1_L151Vfs*25	HLA-B44:03	KELEVDKRLF	0.9993	0.8153	0.0495	145.8	0.1687	5.22	1/888	1/7086
INDEL	Breast	PXDNL_W992Cfs*24	HLA-B07:02	AAAHHLQPL	0.9922	0.5169	0.7376	280.4	0.592	2.31	1/888	1/7086
INDEL	Breast	RPL8_I112Qfs*38	HLA-B07:02	SPTTLRPRRPV	0.9993	0.615	1.3629	99.5	0.2955	875.9	1/888	1/7086
INDEL	Breast	POLR2A_S1794Lfs*131	HLA-B07:02	RPHQVTPL	0.9996	0.5737	0.2825	8.4	0.0169	140.16	1/888	1/7086
INDEL	Breast	POLR2A_S1794Lfs*131	HLA-B07:02	QPIPQAHPA	0.9814	0.589	0.184	496.9	0.8281	140.16	1/888	1/7086
INDEL	Breast	POLR2A_S1794Lfs*131	HLA-C07:02	VYPNLSQVL	0.7201	0.8708	0.0315	171.8	0.1072	140.16	1/888	1/7086
INDEL	Breast	POLR2A_S1794Lfs*131	HLA-C07:02	YLFPNLSSL	0.7157	0.9048	0.051	70.4	0.0353	140.16	1/888	1/7086
INDEL	Breast	POLR2A_S1794Lfs*131	HLA-C06:02	YLFPNLSSL	0.9979	0.9948	0.0465	313.9	0.1079	140.16	1/888	1/7086
INDEL	Breast	POLR2A_S1794Lfs*131	HLA-B07:02	HPAIPRPHQV	0.975	0.6856	0.148	93.4	0.282	140.16	1/888	1/7086
INDEL	Breast	POLR2A_S1794Lfs*131	HLA-B07:02	RPHQVTPLPA	0.9976	0.6089	0.1336	26.9	0.0985	140.16	1/888	1/7086
INDEL	Breast	POLR2A_S1794Lfs*131	HLA-B07:02	HPATAPARPA	0.9953	0.7665	0.433	100.5	0.2976	140.16	1/888	1/7086
INDEL	Breast	POLR2A_S1794Lfs*131	HLA-C07:02	SYLFPNLSSL	0.9281	0.9622	0.6973	352.5	0.2335	140.16	1/888	1/7086
INDEL	Breast	POLR2A_S1794Lfs*131	HLA-B07:02	RPATAQPHPQV	0.9987	0.753	0.5245	417.4	0.7506	140.16	1/888	1/7086
INDEL	Breast	NIPBL_A1925Nfs*17	HLA-B57:01	CGCSMQRYW	0.9987	0.9411	0.5924	188.7	0.3662	18.23	1/888	1/7086
INDEL	Breast	NIPBL_A1925Nfs*17	HLA-B57:01	RCGCSMQRYW	0.9992	0.9695	0.6594	197.3	0.3777	18.23	1/888	1/7086
INDEL	Breast	MR1_D257_W263del	HLA-C03:04	LPSGASIEL	0.9962	0.9789	0.1149	350.2	0.7901	30.47	1/888	1/7086
INDEL	Breast	MR1_D257_W263del	HLA-A02:01	ILPSGASIEL	0.8585	0.7551	0.3577	199.7	1.6447	30.47	2/888	2/7086
INDEL	Breast	MR1_D257_W263del	HLA-A02:01	ILPSGASIEL	0.8585	0.7551	0.3577	199.7	1.6447	30.47	2/888	2/7086
INDEL	Breast	KCTD3_S49Kfs*23	HLA-B44:03	FEMKLVLY	0.9972	0.9522	0.3367	414	0.3811	96.84	1/888	1/7086
INDEL	Breast	KCTD3_S49Kfs*23	HLA-B44:03	FEMKLVLYL	0.9489	0.9337	0.5491	90.8	0.1062	96.84	1/888	1/7086
INDEL	Breast	KCTD3_S49Kfs*23	HLA-A02:01	LLIEIQQHL	0.9991	0.5609	0.0031	10.5	0.1241	96.84	2/888	2/7086
INDEL	Breast	KCTD3_S49Kfs*23	HLA-A02:01	LLIEIQQHL	0.9991	0.5609	0.0031	10.5	0.1241	96.84	2/888	2/7086
INDEL	Breast	KCTD3_S49Kfs*23	HLA-C03:04	LLIEIQQHL	0.9982	0.9893	0.0618	395.1	0.8532	96.84	1/888	1/7086
INDEL	Breast	KCTD3_S49Kfs*23	HLA-A02:01	SLLKHFEMKL	0.9636	0.7313	1.0955	73.6	0.8571	96.84	2/888	2/7086
INDEL	Breast	KCTD3_S49Kfs*23	HLA-A02:01	SLLKHFEMKL	0.9636	0.7313	1.0955	73.6	0.8571	96.84	2/888	2/7086
INDEL	Breast	KCTD3_S49Kfs*23	HLA-A02:01	YLLIEIQQHL	0.9949	0.5421	0.3698	12.4	0.1483	96.84	2/888	2/7086
INDEL	Breast	KCTD3_S49Kfs*23	HLA-A02:01	YLLIEIQQHL	0.9949	0.5421	0.3698	12.4	0.1483	96.84	2/888	2/7086
INDEL	Breast	KCTD3_S49Kfs*23	HLA-B44:03	IEIQQHLHPF	0.996	0.8226	0.6467	181.1	0.1974	96.84	1/888	1/7086
INDEL	Breast	BRCA2_L1965Ffs*39	HLA-C03:04	FISQSHLQI	0.9924	0.9785	0.5094	85.3	0.3266	1.98	1/888	1/7086
INDEL	Breast	BRCA2_L1965Ffs*39	HLA-C03:04	ISQSHLQIL	0.9997	0.9682	0.3235	296	0.7172	1.98	1/888	1/7086
INDEL	Breast	BRCA2_L1965Ffs*39	HLA-A02:01	FLAQQVENL	0.9966	0.803	0.0062	6.9	0.0644	1.98	2/888	2/7086
INDEL	Breast	BRCA2_L1965Ffs*39	HLA-A02:01	FLAQQVENL	0.9966	0.803	0.0062	6.9	0.0644	1.98	2/888	2/7086
INDEL	Breast	BRCA2_L1965Ffs*39	HLA-C03:04	FLAQQVENL	0.9953	0.9963	0.1098	355.9	0.7972	1.98	1/888	1/7086
INDEL	Breast	BRCA2_L1965Ffs*39	HLA-A02:01	ILVGFLAQQV	0.9951	0.773	0.5741	23.1	0.3173	1.98	2/888	2/7086
INDEL	Breast	BRCA2_L1965Ffs*39	HLA-A02:01	ILVGFLAQQV	0.9951	0.773	0.5741	23.1	0.3173	1.98	2/888	2/7086
INDEL	Breast	TRPS1_G32Efs*23	HLA-A32:01	KVSERTKNF	0.9845	0.9179	0.4078	262.7	0.4454	131.61	1/888	1/7086
INDEL	Breast	TRPS1_G32Efs*23	HLA-B08:01	FLQIRCQKI	0.9782	0.5111	0.5165	53.6	0.0954	131.61	1/888	1/7086
INDEL	Breast	EEF1A1_G50Dfs*16	HLA-A02:01	GLLQVCLGL	0.9427	0.6336	0.3639	39	0.5071	1219.3	1/888	1/7086
INDEL	Breast	MAP3K1_L319Tfs*7	HLA-C12:03	RARLYLTAA	0.792	0.9824	1.182	287.5	1.0558	46.11	1/888	1/7086
INDEL	Breast	MAP3K1_S602Rfs*55	HLA-B57:01	HAAAFCQW	0.9996	0.9967	0.6911	224.1	0.4126	46.11	1/888	1/7086
INDEL	Breast	MAP3K1_S602Rfs*55	HLA-C12:03	RALEILGAA	0.7421	0.9862	0.891	399.5	1.338	46.11	1/888	1/7086
INDEL	Breast	MAP3K1_S602Rfs*55	HLA-A02:01	ILGAAVEAA	0.9706	0.5332	0.6973	186.7	1.5761	46.11	1/888	1/7086
INDEL	Breast	MAP3K1_S602Rfs*55	HLA-B18:01	QEMWWRHAA	0.8831	0.9756	0.1596	67.2	0.0462	46.11	1/888	1/7086
INDEL	Breast	MAP3K1_S602Rfs*55	HLA-A02:01	AAAFCQWSV	0.761	0.6252	1.1307	216.8	1.7318	46.11	1/888	1/7086
INDEL	Breast	MAP3K1_S602Rfs*55	HLA-C12:03	AAFCQWSVL	0.9894	0.9899	0.5213	37.6	0.1602	46.11	1/888	1/7086
INDEL	Breast	MAP3K1_S602Rfs*55	HLA-C12:03	LTLSTKCTL	0.8768	0.975	1.1987	191	0.7936	46.11	1/888	1/7086
INDEL	Breast	MAP3K1_S602Rfs*55	HLA-B18:01	QEMWWRHAAAF	0.9808	0.9583	1.0091	89.6	0.0635	46.11	1/888	1/7086
INDEL	Breast	NHSL1_S1150Ifs*15	HLA-C12:03	SSIRVTMAV	0.996	0.9221	0.4845	24.7	0.0956	4.87	1/888	1/7086
INDEL	Breast	NHSL1_S1150Ifs*15	HLA-C12:03	VTMAVRLSV	0.9737	0.9589	0.3956	48.9	0.2142	4.87	1/888	1/7086
INDEL	Breast	NHSL1_S1150Ifs*15	HLA-A02:01	TMAVRLSVV	0.9726	0.5668	0.1418	188.3	1.5839	4.87	1/888	1/7086
INDEL	Breast	NHSL1_S1150Ifs*15	HLA-C12:03	MAVRLSVVA	0.9921	0.9787	1.0394	418.4	1.3782	4.87	1/888	1/7086
INDEL	Breast	NHSL1_S1150Ifs*15	HLA-C12:03	AVRLSVVAL	0.9864	0.9779	0.3639	239.7	0.9362	4.87	1/888	1/7086
INDEL	Breast	NHSL1_S1150Ifs*15	HLA-C12:03	MAVRLSVVAL	0.9991	0.9679	0.9036	206.5	0.8439	4.87	1/888	1/7086
INDEL	Breast	SFI1_R221Tfs*75	HLA-A02:01	ILTGVVEHV	0.9982	0.7359	0.0011	13.2	0.1603	8.11	1/888	1/7086
INDEL	Breast	SFI1_R221Tfs*75	HLA-C15:02	VTVAGTAPV	0.9991	0.9137	0.7726	193.6	0.2115	8.11	1/888	1/7086
INDEL	Breast	SFI1_R221Tfs*75	HLA-A02:01	IILTGVVEHV	0.9937	0.7497	0.2367	65.7	0.7896	8.11	1/888	1/7086
INDEL	Breast	TECPR2_I34Sfs*34	HLA-C12:03	WAAASACSI	0.7652	0.9779	1.4215	40.8	0.1761	14.19	1/888	1/7086
INDEL	Breast	MEGF8_K2009Sfs*34	HLA-C12:03	ASSPCSPPM	0.9587	0.9781	0.5886	399.8	1.3387	8.09	1/888	1/7086
INDEL	Breast	MEGF8_K2009Sfs*34	HLA-C12:03	MTGRASATL	0.9724	0.9618	1.1086	175.3	0.7372	8.09	1/888	1/7086
INDEL	Breast	OST4_V23del	HLA-A02:01	FLLVLYHYV	0.9781	0.6066	0.1098	3.7	0.0149	456.5	1/888	1/7086
INDEL	Breast	OST4_V23del	HLA-A02:01	LVLYHYVAV	0.9561	0.7261	1.0837	125.6	1.2253	456.5	1/888	1/7086
INDEL	Breast	HSPD1_T540Kfs*3	HLA-A66:01	DAAGVASLLK	0.9951	0.6288	0.0282	334.5	0.1305	299.31	1/888	1/7086
INDEL	Breast	NIPAL2_V223Yfs*17	HLA-B15:01	VAILASLTY	0.9971	0.8865	0.1746	46.2	0.2298	20.85	1/888	1/7086
INDEL	Breast	NIPAL2_V223Yfs*17	HLA-C03:03	VAILASLTY	0.9215	0.9887	0.3822	479.8	0.983	20.85	1/888	1/7086
INDEL	Breast	NIPAL2_V223Yfs*17	HLA-B15:01	AILASLTYF	0.9757	0.909	0.6173	61.4	0.3278	20.85	1/888	1/7086
INDEL	Breast	NIPAL2_V223Yfs*17	HLA-B15:01	LVAILASLTY	0.9993	0.9064	1.7953	35.5	0.1741	20.85	1/888	1/7086
INDEL	Breast	UNC5B_L704Sfs*19	HLA-A31:01	TASGSTAWR	0.9204	0.6578	0.8186	215.4	1.2695	55.81	1/888	1/7086
INDEL	Breast	UNC5B_L704Sfs*19	HLA-A31:01	SGSTAWRTR	0.9276	0.5929	0.8127	172.7	1.088	55.81	1/888	1/7086
INDEL	Breast	UNC5B_L704Sfs*19	HLA-A31:01	STASGSTAWR	0.9845	0.5477	0.5941	131.2	0.9164	55.81	1/888	1/7086
INDEL	Breast	UNC5B_L704Sfs*19	HLA-A31:01	ASGSTAWRTR	0.9668	0.6614	1.3273	130.1	0.9115	55.81	1/888	1/7086
INDEL	Breast	SLX4_E1816_K1817insPTRRE	HLA-A31:01	ATRREPTRR	0.9662	0.6704	0.4769	82.6	0.6526	6.21	1/888	1/7086
INDEL	Breast	MAP7D1_P23Qfs*33	HLA-B39:06	HHQCQPWSPTL	0.9985	0.8976	0.538	206.6	0.0939	82.5	1/888	1/7086
INDEL	Breast	GBP1_F175Pfs*17	HLA-A24:02	DFVSFPWTW	0.9858	0.8557	0.1401	356.6	0.5367	80.93	1/888	1/7086
INDEL	Breast	ZNF687_R939Pfs*36	HLA-A33:01	QGWGWGAWR	0.9662	0.5673	0.7081	142.7	0.3705	23.35	1/888	1/7086
INDEL	Breast	ZNF687_R939Pfs*36	HLA-C08:02	RLDLWPVSL	0.9999	0.9968	0.0396	386.5	0.0426	23.35	1/888	1/7086
INDEL	Breast	ZNF687_R939Pfs*36	HLA-B39:06	WRLDLWPVSL	0.9989	0.9697	1.3243	160.5	0.0698	23.35	1/888	1/7086
INDEL	Breast	ZNF687_R939Pfs*36	HLA-C07:02	WRLDLWPVSL	0.9981	0.9854	0.7833	326.5	0.2162	23.35	1/888	1/7086
INDEL	Breast	IGSF9_P351Hfs*30	HLA-C07:02	VRANPHCSL	0.813	0.9659	0.3577	148.2	0.0872	19.54	1/888	2/7086
INDEL	Breast	IGSF9_P351Hfs*30	HLA-A33:01	LSAGPRMER	0.9646	0.5285	0.4001	331	0.6771	19.54	1/888	1/7086
INDEL	Breast	CNST_I108Ffs*29	HLA-C07:02	LRRYHQDFF	0.6966	0.7689	0.9059	199.5	0.1292	28.1	1/888	1/7086
INDEL	Breast	CNST_I108Ffs*29	HLA-B39:06	YHQDFFQEI	0.9991	0.9393	0.0062	53.3	0.0168	28.1	1/888	1/7086
INDEL	Breast	CNST_I108Ffs*29	HLA-C07:02	YHQDFFQEI	0.7883	0.9673	0.0226	270.2	0.177	28.1	1/888	1/7086
INDEL	Breast	CNST_I108Ffs*29	HLA-A24:02	RYHQDFFQEI	0.9962	0.6511	0.3199	35.5	0.0774	28.1	1/888	1/7086
INDEL	Breast	CNST_I108Ffs*29	HLA-B39:06	YHQDFFQEIL	0.9926	0.9477	0.1527	72.9	0.0241	28.1	1/888	1/7086
INDEL	Breast	CNST_I108Ffs*29	HLA-A24:02	RYHQDFFQEIL	0.9984	0.746	1.671	314.2	0.4965	28.1	1/888	1/7086
INDEL	Breast	KIAA1407_N164Mfs*3	HLA-C08:02	FIDHLLHKM	0.9996	0.97	0.0794	408	0.0466	1.31	1/888	1/7086
INDEL	Breast	TRPC1_F515Lfs*41	HLA-A24:02	SWVHYRFQW	0.983	0.7306	0.3685	68.9	0.1509	5.08	1/888	1/7086
INDEL	Breast	TRPC1_F515Lfs*41	HLA-C07:02	YRFQWDRCY	0.8316	0.9655	0.0427	80.6	0.0415	5.08	1/888	1/7086
INDEL	Breast	LCA5_D26Vfs*85	HLA-B39:06	HHYSYLSV	0.9998	0.6883	0.3057	194.6	0.088	7.31	1/888	1/7086
INDEL	Breast	LCA5_D26Vfs*85	HLA-B14:02	HHYSYLSVL	0.9858	0.5807	0.0187	95.5	0.0091	7.31	1/888	1/7086
INDEL	Breast	LCA5_D26Vfs*85	HLA-B39:06	HHYSYLSVL	0.9996	0.7053	0.024	11.7	0.0067	7.31	1/888	1/7086
INDEL	Breast	LCA5_D26Vfs*85	HLA-C07:02	HHYSYLSVL	0.7824	0.8841	0.0412	117.7	0.0636	7.31	1/888	1/7086
INDEL	Breast	LCA5_D26Vfs*85	HLA-C08:02	LADHRWSVL	0.9998	0.9927	0.1761	197.4	0.0212	7.31	1/888	1/7086
INDEL	Breast	LCA5_D26Vfs*85	HLA-B14:02	DHRWSVLHL	0.9974	0.7823	0.4078	479.7	0.0386	7.31	1/888	1/7086
INDEL	Breast	LCA5_D26Vfs*85	HLA-A24:02	RWSVLHLQV	0.9096	0.5592	1.4863	361.5	0.541	7.31	1/888	1/7086
INDEL	Breast	LCA5_D26Vfs*85	HLA-C07:02	SHFGKILIL	0.8167	0.8858	0.0062	93.6	0.0511	7.31	1/888	1/7086
INDEL	Breast	LCA5_D26Vfs*85	HLA-A24:02	RWSVLHLQVL	0.9811	0.5777	1.9339	385.5	0.5615	7.31	1/888	1/7086
INDEL	Breast	LCA5_D26Vfs*85	HLA-B39:06	SHFGKILILL	0.9989	0.5427	0.2942	162	0.0709	7.31	1/888	1/7086
INDEL	Breast	LCA5_D26Vfs*85	HLA-A24:02	SYLSVLKRHSL	0.9945	0.5004	0.3974	237.7	0.41	7.31	1/888	1/7086
INDEL	Breast	PLOD3_Q293Sfs*65	HLA-A24:02	FWPCLWNSL	0.939	0.6224	0.5779	158.4	0.3005	36.49	1/888	2/7086
INDEL	Breast	PLOD3_Q293Sfs*65	HLA-A24:02	CFWPCLWNSL	0.9855	0.6991	1.156	494.1	0.6567	36.49	1/888	2/7086
INDEL	Breast	PLOD3_Q293Sfs*65	HLA-A24:02	FWPCLWNSLL	0.9614	0.5905	1.0547	199.1	0.3615	36.49	1/888	2/7086
INDEL	Breast	PBK_K18Efs*50	HLA-A24:02	VYAEAWLW	0.9989	0.7216	0.5279	47	0.1065	95.84	1/888	1/7086
INDEL	Breast	PBK_K18Efs*50	HLA-C07:02	YKYPGLSVY	0.8219	0.8824	0.0052	200.3	0.1298	95.84	1/888	1/7086
INDEL	Breast	PBK_K18Efs*50	HLA-A24:02	VYAEAWLWY	0.8815	0.5865	0.458	472.4	0.6367	95.84	1/888	1/7086
INDEL	Breast	PBK_K18Efs*50	HLA-A24:02	VYAEAWLWYW	0.9977	0.7945	0.0794	16.8	0.0274	95.84	1/888	1/7086
INDEL	Breast	MICAL2_P1111Qfs*20	HLA-A24:02	AFQCYTHFL	0.881	0.6695	0.5924	305.1	0.4874	13.6	1/888	3/7086
INDEL	Breast	ZNF429_I390Ffs*?	HLA-C07:02	KFLPIPLHL	0.7674	0.9859	0.0255	250.7	0.1648	9.08	1/888	1/7086
INDEL	Breast	ZNF429_I390Ffs*?	HLA-A24:02	KFIGWVWWL	0.9076	0.5951	0.4737	194.5	0.3552	9.08	1/888	1/7086
INDEL	Breast	ZNF429_I390Ffs*?	HLA-C07:02	WLMPVIPAL	0.6912	0.973	0.3217	466.9	0.3046	9.08	1/888	1/7086
INDEL	Breast	ZNF429_I390Ffs*?	HLA-A24:02	LMPVIPALW	0.9926	0.6515	0.3041	67.4	0.1483	9.08	1/888	1/7086
INDEL	Breast	ZNF429_I390Ffs*?	HLA-A24:02	KFIGWVWWLM	0.9857	0.5184	1.224	129.7	0.2571	9.08	1/888	1/7086
INDEL	Breast	ZNF429_I390Ffs*?	HLA-A24:02	WLMPVIPALW	0.9931	0.6409	0.7151	335.4	0.5171	9.08	1/888	1/7086
INDEL	Breast	NR1H2_G41Vfs*114	HLA-C07:02	VRTLMSQAL	0.8765	0.9573	0.2213	236.5	0.1555	25.48	1/888	1/7086
INDEL	Breast	ZSCAN22_P103Qfs*25	HLA-A33:01	QFLGALPQR	0.936	0.5206	0.1182	207.9	0.4884	16.49	1/888	1/7086
INDEL	Breast	ZSCAN22_P103Qfs*25	HLA-A33:01	EQFLGALPQR	0.9485	0.723	0.3089	108.9	0.2921	16.49	1/888	1/7086
INDEL	Breast	FAM155B_N185Tfs*40	HLA-A24:02	TFGTSLSPF	0.9934	0.6657	0.6616	189.3	0.348	1.64	1/888	1/7086
INDEL	Breast	FAM155B_N185Tfs*40	HLA-A24:02	CWAWTAPTAW	0.9884	0.8983	1.0091	288.9	0.4705	1.64	1/888	1/7086
INDEL	Breast	COL14A1_T1092Pfs*50	HLA-C07:02	YKPKRLFLM	0.7646	0.8288	0.6692	136.8	0.0751	7.51	2/888	2/7086
INDEL	Breast	COL14A1_T1092Pfs*50	HLA-C07:02	YKPKRLFLM	0.7646	0.8288	0.6692	136.8	0.0751	7.51	2/888	2/7086
INDEL	Breast	COL14A1_T1092Pfs*50	HLA-A02:06	SMFEIPCSL	0.9729	0.711	0.0177	28.7	0.3671	7.51	1/888	1/7086
INDEL	Breast	COL14A1_T1092Pfs*50	HLA-C07:02	SMFEIPCSL	0.5147	0.9628	0.1336	219.9	0.1441	7.51	2/888	2/7086
INDEL	Breast	COL14A1_T1092Pfs*50	HLA-C07:02	SMFEIPCSL	0.5147	0.9628	0.1336	219.9	0.1441	7.51	2/888	2/7086
INDEL	Breast	COL14A1_T1092Pfs*50	HLA-A02:06	FLMQLNTFHT	0.9628	0.5832	0.6737	40.3	0.5122	7.51	1/888	1/7086
INDEL	Breast	BRCA2_E1646Kfs*24	HLA-A02:06	KVLQLVTQI	0.9663	0.627	0.0583	112.7	1.197	1.59	1/888	1/7086
INDEL	Breast	BRCA2_E1646Kfs*24	HLA-A02:06	QLVTQISPL	0.9345	0.5022	0.5982	220.7	1.9392	1.59	1/888	1/7086
INDEL	Breast	BRCA2_E1646Kfs*24	HLA-A02:06	TQISPLIQSL	0.8828	0.6273	0.6674	89.9	1.0145	1.59	1/888	1/7086
INDEL	Breast	NSRP1_N450Kfs*21	HLA-B08:01	ILGQRINFL	0.984	0.6246	0.5454	177.5	0.3139	27.14	1/888	1/7086
INDEL	Breast	ZNF518A_S554Ifs*15	HLA-B27:02	IRIGYSISEF	1	0.5062	0.3822	299.3	0.1084	18.26	1/888	1/7086
INDEL	Breast	PINK1_G513Vfs*5	HLA-A02:01	NVLHLSLWV	0.9111	0.6542	1.1446	233.4	1.8125	11.98	1/888	1/7086
INDEL	Breast	KIAA0319L_K133Nfs*22	HLA-A02:01	FLKNSKLQMI	0.8818	0.5738	1.5795	199.6	1.6443	23.51	1/888	3/7086
INDEL	Breast	CLSPN_M180Wfs*7	HLA-B27:05	RRLEKEERKWK	0.9995	0.6045	0.704	385.7	1.0292	7	1/888	1/7086
INDEL	Breast	ABL2_K836Nfs*34	HLA-A02:01	QLFLSEHPL	0.9343	0.5092	0.6079	92.2	1.0055	11.98	1/888	1/7086
INDEL	Breast	ABL2_K836Nfs*34	HLA-A02:01	FLSEHPLGI	0.9986	0.5643	0.0005	4.3	0.0229	11.98	1/888	1/7086
INDEL	Breast	ABL2_K836Nfs*34	HLA-B08:01	MLPKNQRKVL	0.9484	0.609	1.3988	74.1	0.1276	11.98	1/888	2/7086
INDEL	Breast	C1orf106_E23Rfs*90	HLA-A02:01	NLAQAGHGV	0.8958	0.7952	0.1285	257.5	1.9345	9.03	1/888	2/7086
INDEL	Breast	C1orf106_E23Rfs*90	HLA-B27:05	RRGRRAAPEL	0.9995	0.8044	0.9432	130.1	0.4305	9.03	1/888	1/7086
INDEL	Breast	C1orf106_E23Rfs*90	HLA-C07:01	SRNPPWRVRM	0.9989	0.7719	0.3624	385.1	0.1357	9.03	1/888	1/7086
INDEL	Breast	KCTD3_R521Efs*18	HLA-B27:05	VRSRLLTVL	0.9989	0.7891	0.259	84.2	0.2798	51.3	1/888	1/7086
INDEL	Breast	KCTD3_R521Efs*18	HLA-C07:01	VRSRLLTVL	0.9966	0.7781	0.1656	248	0.0901	51.3	1/888	1/7086
INDEL	Breast	KCTD3_R521Efs*18	HLA-B27:05	SRLLTVLQY	0.9998	0.793	0.0481	117.2	0.3888	51.3	1/888	1/7086
INDEL	Breast	KCTD3_R521Efs*18	HLA-B08:01	YVRSRLLTVL	0.9908	0.669	1.1027	23.7	0.0402	51.3	1/888	1/7086
INDEL	Breast	KCTD3_R521Efs*18	HLA-B27:05	RSRLLTVLQY	0.9979	0.8495	1.5977	41.7	0.1153	51.3	1/888	1/7086
INDEL	Breast	KCTD3_R521Efs*18	HLA-B27:05	VRSRLLTVLQY	0.9999	0.6206	0.2367	481.8	1.212	51.3	1/888	1/7086
INDEL	Breast	THADA_L333Hfs*7	HLA-B27:05	GRSGEALHMF	1	0.8438	0.4382	206.8	0.638	14.18	1/888	1/7086
INDEL	Breast	FAHD2B_P281Qfs*26	HLA-A02:01	VILTGTPQV	0.979	0.6138	0.1272	43.4	0.5584	4.42	1/888	9/7086
INDEL	Breast	FAHD2B_P281Qfs*26	HLA-B27:05	RRGMKSSVR	0.9967	0.5271	0.7905	308.9	0.87	4.42	1/888	1/7086
INDEL	Breast	FAHD2B_P281Qfs*26	HLA-A02:01	ILTGTPQVSV	0.992	0.5064	0.8951	189.4	1.5895	4.42	1/888	9/7086
INDEL	Breast	FAHD2B_P281Qfs*26	HLA-B27:05	RRGMKSSVRL	0.9997	0.6087	0.7494	31.2	0.0676	4.42	1/888	1/7086
INDEL	Breast	FAHD2B_P281Qfs*26	HLA-B27:05	SRRGMKSSVRL	0.9991	0.6182	0.6891	489.8	1.2269	4.42	1/888	1/7086
INDEL	Breast	FAHD2B_P281Qfs*26	HLA-B27:05	RRGMKSSVRLK	0.9993	0.5857	0.5924	256	0.7578	4.42	1/888	1/7086
INDEL	Breast	GRB14_F280Sfs*40	HLA-B08:01	NMEHRLTM	0.9979	0.6233	1.4148	149.5	0.2671	18.38	1/888	1/7086
INDEL	Breast	GRB14_F280Sfs*40	HLA-B27:05	HRLTMDSAL	0.999	0.6415	0.5454	65.6	0.2173	18.38	1/888	1/7086
INDEL	Breast	GRB14_F280Sfs*40	HLA-A02:01	LQFSANLAIV	0.9584	0.5536	1.3074	248.6	1.8931	18.38	1/888	1/7086
INDEL	Breast	GRB14_F280Sfs*40	HLA-B27:05	HRLTMDSALSL	1	0.5668	0.6079	52.9	0.1704	18.38	1/888	1/7086
INDEL	Breast	LRP2_F766Lfs*46	HLA-B08:01	MILSKRLM	0.9977	0.6614	1.5977	73.6	0.1265	11.92	1/888	1/7086
INDEL	Breast	LRP2_F766Lfs*46	HLA-A02:01	KMLKVWLL	0.9808	0.5395	1.8326	150.6	1.3854	11.92	1/888	1/7086
INDEL	Breast	LRP2_F766Lfs*46	HLA-B08:01	TLITRVSV	0.999	0.6448	0.9814	169.5	0.2986	11.92	1/888	1/7086
INDEL	Breast	LRP2_F766Lfs*46	HLA-B08:01	MILSKRLMA	0.987	0.8028	1.3629	227.4	0.3988	11.92	1/888	1/7086
INDEL	Breast	LRP2_F766Lfs*46	HLA-B27:05	KRLMAQEEK	0.9989	0.8074	0.7172	230	0.6992	11.92	1/888	1/7086
INDEL	Breast	LRP2_F766Lfs*46	HLA-A02:01	WLLIGFQRI	0.9555	0.5294	0.6737	85.5	0.9538	11.92	1/888	1/7086
INDEL	Breast	LRP2_F766Lfs*46	HLA-B27:05	QRISIGQTL	0.9998	0.6365	0.1182	83.1	0.2764	11.92	1/888	1/7086
INDEL	Breast	LRP2_F766Lfs*46	HLA-C07:01	QRISIGQTL	0.9993	0.774	0.0745	182.2	0.0695	11.92	1/888	1/7086
INDEL	Breast	LRP2_F766Lfs*46	HLA-B27:05	KRLMAQEEKF	1	0.7945	0.3367	155.5	0.5055	11.92	1/888	1/7086
INDEL	Breast	LRP2_F766Lfs*46	HLA-B08:01	MAQEEKFSQL	0.9731	0.7991	1.9682	158.6	0.2818	11.92	1/888	1/7086
INDEL	Breast	LRP2_F766Lfs*46	HLA-B27:05	FQRISIGQTL	0.9889	0.8934	0.9687	75	0.2491	11.92	1/888	1/7086
INDEL	Breast	LRP2_F766Lfs*46	HLA-C07:01	FQRISIGQTL	0.8768	0.7161	1.2078	267.1	0.0969	11.92	1/888	1/7086
INDEL	Breast	LRP2_F766Lfs*46	HLA-B27:05	QRISIGQTLI	0.9998	0.5336	0.5213	114.3	0.3803	11.92	1/888	1/7086
INDEL	Breast	U2SURP_A661Qfs*8	HLA-B27:05	FRAWEDWQF	0.9982	0.7615	0.348	327.8	0.909	43.28	1/888	1/7086
INDEL	Breast	IGF2BP2_P166Lfs*49	HLA-B08:01	LPGSKATPL	0.9888	0.635	0.5471	99.4	0.178	74.81	1/888	1/7086
INDEL	Breast	ANAPC4_N148Tfs*67	HLA-A02:01	LIFSSLEEA	0.9835	0.5837	0.6314	118.2	1.1781	11.95	1/888	1/7086
INDEL	Breast	ANAPC4_N148Tfs*67	HLA-A02:01	SLEEALDLL	0.9472	0.6824	0.5619	125.8	1.2269	11.95	1/888	1/7086
INDEL	Breast	ANAPC4_N148Tfs*67	HLA-A02:01	ALDLLSFML	0.9834	0.5243	0.2925	25.8	0.3522	11.95	1/888	1/7086
INDEL	Breast	ANAPC4_N148Tfs*67	HLA-B08:01	MLMECLKLL	0.7301	0.8653	0.9595	294.9	0.4931	11.95	1/888	1/7086
INDEL	Breast	ANAPC4_N148Tfs*67	HLA-A02:01	KLLESQGLL	0.9866	0.7151	0.2071	75.1	0.8691	11.95	1/888	1/7086
INDEL	Breast	ANAPC4_N148Tfs*67	HLA-A02:01	LLVLVLHYV	0.9351	0.6896	0.1242	14.9	0.184	11.95	1/888	1/7086
INDEL	Breast	ANAPC4_N148Tfs*67	HLA-A02:01	LVLHYVYQV	0.9872	0.7135	0.0583	9	0.1028	11.95	1/888	1/7086
INDEL	Breast	ANAPC4_N148Tfs*67	HLA-A02:01	YLVKKILMKL	0.9735	0.5785	0.9574	90.4	0.9921	11.95	1/888	1/7086
INDEL	Breast	ANAPC4_N148Tfs*67	HLA-A02:01	GLIFSSLEEA	0.9825	0.5297	1.5528	125.1	1.2222	11.95	1/888	1/7086
INDEL	Breast	ANAPC4_N148Tfs*67	HLA-A02:01	KLLESQGLLV	0.9988	0.7223	0.0822	20.7	0.2828	11.95	1/888	1/7086
INDEL	Breast	ANAPC4_N148Tfs*67	HLA-A02:01	GLLVLVLHYV	0.9613	0.6297	0.3137	32.6	0.4351	11.95	1/888	1/7086
INDEL	Breast	ANAPC4_N148Tfs*67	HLA-A02:01	VLVLHYVYQV	0.9856	0.7758	1.0496	16.2	0.2014	11.95	1/888	1/7086
INDEL	Breast	ANAPC4_N148Tfs*67	HLA-A02:01	KLLESQGLLVL	0.9992	0.7468	0.0282	66.1	0.793	11.95	1/888	1/7086
INDEL	Breast	WWC2_E911Rfs*16	HLA-B27:05	KRLKLNCQR	0.9991	0.8994	0.721	40.8	0.1119	12.81	1/888	1/7086
INDEL	Breast	WWC2_E911Rfs*16	HLA-B27:05	KRLKLNCQRT	0.9979	0.8931	1.8911	363	0.9847	12.81	1/888	1/7086
INDEL	Breast	WWC2_E911Rfs*16	HLA-B27:05	KRLKLNCQRTV	0.9999	0.8941	0.9275	228.9	0.6966	12.81	1/888	1/7086
INDEL	Breast	MAN2A1_F468Lfs*22	HLA-A02:01	FLMRWIKQM	0.9691	0.6823	0.1055	9.8	0.1148	10.6	1/888	2/7086
INDEL	Breast	MAN2A1_F468Lfs*22	HLA-B08:01	FLMRWIKQM	0.9851	0.9374	0.6117	152.1	0.2715	10.6	1/888	1/7086
INDEL	Breast	MAN2A1_F468Lfs*22	HLA-B08:01	MRWIKQMKL	0.8824	0.6311	0.6973	322.8	0.5316	10.6	1/888	1/7086
INDEL	Breast	MAN2A1_F468Lfs*22	HLA-B27:05	MRWIKQMKL	0.9998	0.8249	0.1039	9.5	0.0092	10.6	1/888	2/7086
INDEL	Breast	MAN2A1_F468Lfs*22	HLA-C07:01	MRWIKQMKL	0.9986	0.6052	0.0762	54.8	0.0168	10.6	1/888	1/7086
INDEL	Breast	MAN2A1_F468Lfs*22	HLA-B27:05	KQMKLRETR	0.9955	0.6475	0.7473	431	1.1125	10.6	1/888	2/7086
INDEL	Breast	MAN2A1_F468Lfs*22	HLA-B27:05	TRANRCSLF	0.9979	0.9389	0.9253	412	1.0773	10.6	1/888	2/7086
INDEL	Breast	MAN2A1_F468Lfs*22	HLA-C07:01	TRANRCSLF	0.992	0.7657	0.6038	158.1	0.0615	10.6	1/888	1/7086
INDEL	Breast	MAN2A1_F468Lfs*22	HLA-A02:01	TLSDFLMRWI	0.9539	0.8338	1.2725	33.7	0.4483	10.6	1/888	2/7086
INDEL	Breast	MAN2A1_F468Lfs*22	HLA-B27:05	MRWIKQMKLR	0.9997	0.7318	0.8629	27.4	0.0563	10.6	1/888	2/7086
INDEL	Breast	DMXL1_L410Yfs*17	HLA-A02:01	VLNNHLLRPV	0.9862	0.5941	1.473	37.3	0.4888	4.55	1/888	5/7086
INDEL	Breast	RING1_G322Afs*54	HLA-A02:01	LTPEDLMGV	0.8754	0.8731	0.2712	177.7	1.5292	101.28	1/888	1/7086
INDEL	Breast	RING1_G322Afs*54	HLA-A02:01	VLRSLLCPA	0.8338	0.574	0.9275	217.4	1.7351	101.28	1/888	1/7086
INDEL	Breast	RING1_G322Afs*54	HLA-A02:01	SLLCPAWRA	0.94	0.8756	0.3137	38.9	0.506	101.28	1/888	1/7086
INDEL	Breast	RING1_G322Afs*54	HLA-A02:01	LLCPAWRASV	0.9501	0.5309	0.7967	238.2	1.8385	101.28	1/888	1/7086
INDEL	Breast	GSR_P420Lfs*18	HLA-B27:05	RKMKPFINM	0.9997	0.8702	0.3009	477.6	1.204	47.66	1/888	1/7086
INDEL	Breast	GSR_P420Lfs*18	HLA-B27:05	SRKMKPFINM	0.9999	0.8389	0.9455	90.1	0.2981	47.66	1/888	1/7086
INDEL	Breast	TRPA1_C414Vfs*16	HLA-B08:01	IMHVDRGAL	0.9095	0.8972	1.418	497	0.7631	2.4	1/888	1/7086
INDEL	Breast	SCRIB_N680Tfs*37	HLA-B27:05	RRGPWFLR	0.9998	0.8131	0.2071	91.7	0.3036	81.13	1/888	1/7086
INDEL	Breast	SCRIB_N680Tfs*37	HLA-B27:05	KRKRPALRR	0.9977	0.6081	0.7986	207.8	0.6408	81.13	1/888	1/7086
INDEL	Breast	SCRIB_N680Tfs*37	HLA-B27:05	RRTRRGPWF	0.995	0.8272	0.7986	39.7	0.1075	81.13	1/888	1/7086
INDEL	Breast	SCRIB_N680Tfs*37	HLA-C07:01	RRTRRGPWF	0.8555	0.5924	0.9226	403	0.1407	81.13	1/888	1/7086
INDEL	Breast	SCRIB_N680Tfs*37	HLA-B27:05	TRRGPWFLR	0.9879	0.6693	0.3851	208.9	0.6438	81.13	1/888	1/7086
INDEL	Breast	SCRIB_N680Tfs*37	HLA-B27:05	RRRTRRGPWF	0.9988	0.8232	1.1394	97.2	0.324	81.13	1/888	1/7086
INDEL	Breast	SCRIB_N680Tfs*37	HLA-B27:05	RRTRRGPWFL	0.9994	0.7863	0.7905	22.5	0.0388	81.13	1/888	1/7086
INDEL	Breast	SCRIB_N680Tfs*37	HLA-B27:05	RRGPWFLRPL	0.9999	0.7164	0.4986	18.3	0.0251	81.13	1/888	1/7086
INDEL	Breast	SCRIB_N680Tfs*37	HLA-B27:05	RRRTRRGPWFL	0.9996	0.7544	1.1446	157.3	0.5103	81.13	1/888	1/7086
INDEL	Breast	SCRIB_N680Tfs*37	HLA-B27:05	RRTRRGPWFLR	0.9997	0.6227	0.4986	43.2	0.1206	81.13	1/888	1/7086
INDEL	Breast	GALNT12_L404Wfs*7	HLA-B08:01	NPRARWNL	0.9982	0.6424	0.3057	44.3	0.0746	3.21	1/888	1/7086
INDEL	Breast	GALNT12_L404Wfs*7	HLA-B27:05	ARWNLLGM	0.9999	0.9285	1.1651	46.8	0.1376	3.21	1/888	1/7086
INDEL	Breast	GALNT12_L404Wfs*7	HLA-B08:01	NPRARWNLL	0.9858	0.6098	0.0344	27.4	0.0463	3.21	1/888	1/7086
INDEL	Breast	GALNT12_L404Wfs*7	HLA-B27:05	HRNPRARWNL	0.9991	0.8236	0.7514	82.7	0.275	3.21	1/888	1/7086
INDEL	Breast	GALNT12_L404Wfs*7	HLA-C07:01	HRNPRARWNL	0.996	0.6992	0.6616	371.6	0.1318	3.21	1/888	1/7086
INDEL	Breast	GALNT12_L404Wfs*7	HLA-B27:05	HRNPRARWNLL	0.9998	0.7793	0.9913	464.8	1.1798	3.21	1/888	1/7086
INDEL	Breast	HELLS_R614Efs*11	HLA-A02:01	RMLPELKKEV	0.9676	0.8511	0.9455	259.8	1.9451	5.54	1/888	4/7086
INDEL	Breast	TCF7L2_K485Vfs*8	HLA-C07:01	CRRKKVRSL	0.8911	0.7579	0.9913	352.5	0.126	28.87	1/888	1/7086
INDEL	Breast	TCF7L2_K485Vfs*8	HLA-B27:05	RRKKVRSLH	0.9919	0.8759	0.8607	377.7	1.0139	28.87	1/888	1/7086
INDEL	Breast	TCF7L2_K485Vfs*8	HLA-B27:05	RRKKVRSLHTR	0.9989	0.6397	0.7905	123.5	0.4086	28.87	1/888	1/7086
INDEL	Breast	SLC43A3_I193Pfs*35	HLA-A02:01	FIFPPDAPGA	0.9635	0.73	0.2319	184.7	1.5657	35.86	1/888	1/7086
INDEL	Breast	NBEA_N854Kfs*18	HLA-B27:05	CRADGSSSF	0.9911	0.8031	0.7494	483.1	1.2145	7.04	1/888	1/7086
INDEL	Breast	NBEA_N854Kfs*18	HLA-C07:01	CRADGSSSF	0.9822	0.596	0.5213	237	0.0872	7.04	1/888	1/7086
INDEL	Breast	IGHV3-53_F9Sfs*22	HLA-A02:01	WLSWVSLLL	0.9634	0.6626	0.2896	10.2	0.1203	420.38	1/888	1/7086
INDEL	Breast	IGHV3-53_F9Sfs*22	HLA-A02:01	LLFQKVSSV	0.9968	0.6238	0.0031	12.4	0.1487	420.38	1/888	1/7086
INDEL	Breast	IGHV3-53_F9Sfs*22	HLA-B08:01	LLFQKVSSV	0.9985	0.7623	0.1086	64	0.1132	420.38	1/888	1/7086
INDEL	Breast	ADAL_E218Kfs*33	HLA-C07:01	HKYSWICFL	0.9498	0.5544	1.2529	238.7	0.0877	3.27	1/888	2/7086
INDEL	Breast	ADAL_E218Kfs*33	HLA-A02:01	GMEHFSTPV	0.981	0.5198	0.451	52.3	0.6539	3.27	1/888	4/7086
INDEL	Breast	TP53_L252Sfs*93	HLA-A02:01	ALRCVFVPV	0.9562	0.7058	0.3199	40.8	0.5287	40.62	1/888	1/7086
INDEL	Breast	TP53_L252Sfs*93	HLA-B27:05	LRCVFVPVL	0.999	0.9746	0.719	285	0.819	40.62	1/888	1/7086
INDEL	Breast	TP53_L252Sfs*93	HLA-B08:01	RISARKGSL	0.975	0.7405	0.8422	219.6	0.3868	40.62	1/888	1/7086
INDEL	Breast	TP53_L252Sfs*93	HLA-A02:01	ALSEHCPTT	0.8225	0.6134	0.6911	220.7	1.7511	40.62	1/888	1/7086
INDEL	Breast	TP53_L252Sfs*93	HLA-B27:05	RRNHWMENI	0.9993	0.8932	0.0888	53.4	0.1728	40.62	1/888	1/7086
INDEL	Breast	TP53_L252Sfs*93	HLA-C07:01	RRNHWMENI	0.9962	0.5777	0.0762	288.1	0.1045	40.62	1/888	1/7086
INDEL	Breast	TP53_L252Sfs*93	HLA-B27:05	KRISARKGSL	0.9998	0.7783	0.6973	92.6	0.3072	40.62	1/888	1/7086
INDEL	Breast	TP53_L252Sfs*93	HLA-B27:05	QRRNHWMENI	0.9985	0.8024	1.5528	411.7	1.0766	40.62	1/888	1/7086
INDEL	Breast	TP53_L252Sfs*93	HLA-B27:05	FRSVGVSASR	0.9996	0.7398	0.897	161.7	0.5222	40.62	1/888	1/7086
INDEL	Breast	TANC2_P1519Lfs*33	HLA-B27:05	YRFSPLLWEDR	1	0.7261	1.8326	76.8	0.2554	7.72	1/888	1/7086
INDEL	Breast	EPB41L3_K173Nfs*14	HLA-B08:01	EIKNRFEVV	0.9987	0.5497	0.0686	66.3	0.1165	9.71	1/888	1/7086
INDEL	Breast	EPB41L3_K173Nfs*14	HLA-B27:05	NRFEVVLGTF	0.9999	0.938	0.2089	81	0.2696	9.71	1/888	1/7086
INDEL	Breast	ZNF471_A495Kfs*121	HLA-B08:01	FILERSLM	0.996	0.7027	0.4382	273.6	0.4659	6.83	1/888	1/7086
INDEL	Breast	ZNF471_A495Kfs*121	HLA-A02:01	SLMNVLNV	0.9939	0.6488	0.8169	59.4	0.7259	6.83	1/888	1/7086
INDEL	Breast	ZNF471_A495Kfs*121	HLA-A02:01	WLLIREFIL	0.9288	0.5589	1.4148	52	0.6509	6.83	1/888	1/7086
INDEL	Breast	ZNF471_A495Kfs*121	HLA-B08:01	WLLIREFIL	0.9828	0.88	1.1617	51.9	0.0906	6.83	1/888	1/7086
INDEL	Breast	ZNF471_A495Kfs*121	HLA-A02:01	ILERSLMNV	0.9796	0.673	0.5328	73.8	0.8589	6.83	1/888	1/7086
INDEL	Breast	ZNF471_A495Kfs*121	HLA-B08:01	MLSNRDHTL	0.998	0.5521	0.3268	50.5	0.0876	6.83	1/888	1/7086
INDEL	Breast	ZNF471_A495Kfs*121	HLA-B08:01	LLNIKEFIL	0.9774	0.5769	0.3769	267.6	0.4579	6.83	1/888	1/7086
INDEL	Breast	ZNF471_A495Kfs*121	HLA-A02:01	RLLVIAHPV	0.9884	0.5049	0.1596	11.8	0.1418	6.83	1/888	1/7086
INDEL	Breast	ZNF471_A495Kfs*121	HLA-A02:01	TLAKGPISV	0.9892	0.7659	0.057	27.7	0.3757	6.83	1/888	1/7086
INDEL	Breast	ZNF471_A495Kfs*121	HLA-A02:01	KLLESVHSWL	0.9928	0.6831	0.3495	19.2	0.2604	6.83	1/888	1/7086
INDEL	Breast	ZNF471_A495Kfs*121	HLA-B27:05	IREFILERSL	0.9975	0.8676	1.7317	257.1	0.7601	6.83	1/888	1/7086
INDEL	Breast	ZNF471_A495Kfs*121	HLA-A02:01	FILERSLMNV	0.998	0.6656	0.0778	7.1	0.0681	6.83	1/888	1/7086
INDEL	Breast	ZNF471_A495Kfs*121	HLA-A02:01	SLMNVLNVEM	0.9886	0.5913	0.4048	31.3	0.4191	6.83	1/888	1/7086
INDEL	Breast	ZNF471_A495Kfs*121	HLA-A02:01	FILERNPINV	0.9976	0.5525	0.1383	26.9	0.3657	6.83	1/888	1/7086
INDEL	Breast	ZNF471_A495Kfs*121	HLA-A02:01	RLLVIAHPVL	0.9656	0.6303	1.4566	235.4	1.8232	6.83	1/888	1/7086
INDEL	Breast	ZNF471_A495Kfs*121	HLA-A02:01	STLAKGPISV	0.9585	0.6013	1.3176	214.4	1.7203	6.83	1/888	1/7086
INDEL	Breast	ZNF471_A495Kfs*121	HLA-A02:01	KLLESVHSWLL	0.9978	0.6914	0.2319	10.6	0.1251	6.83	1/888	1/7086
INDEL	Breast	ZNF471_A495Kfs*121	HLA-A02:01	SLMNVLNVEML	0.996	0.5638	0.9525	70	0.8274	6.83	1/888	1/7086
INDEL	Breast	ZNF471_A495Kfs*121	HLA-A02:01	KLIQERNLMSV	0.9989	0.6163	0.1255	33.8	0.4497	6.83	1/888	1/7086
INDEL	Breast	PAXBP1_S281_Q284del	HLA-B27:05	RRIVFSVKEKK	0.9999	0.7977	0.2636	83.7	0.2782	16.77	1/888	1/7086
INDEL	Breast	MOSPD2_K293Rfs*21	HLA-B27:05	KRLTQPNLL	0.9998	0.7151	0.2896	47	0.1388	11.58	1/888	1/7086
INDEL	Breast	MOSPD2_K293Rfs*21	HLA-C07:01	KRLTQPNLL	0.9978	0.7084	0.1746	284.9	0.1032	11.58	1/888	1/7086
INDEL	Breast	MOSPD2_K293Rfs*21	HLA-B27:05	KKMKKLIQK	0.9977	0.7711	0.5245	472	1.1935	11.58	1/888	1/7086
INDEL	Breast	MOSPD2_K293Rfs*21	HLA-B27:05	LKRLTQPNLL	0.9946	0.8152	1.7557	334.4	0.9237	11.58	1/888	1/7086
INDEL	Breast	MOSPD2_K293Rfs*21	HLA-B27:05	KRLTQPNLLPK	0.9999	0.6263	0.2183	70.5	0.2346	11.58	1/888	1/7086
INDEL	Breast	PLEKHG6_H476Ifs*81	HLA-A02:01	NSFLLIIPV	0.8617	0.6322	1.7432	239.3	1.8445	10.46	1/888	1/7086
INDEL	Breast	MAP3K13_E555Kfs*52	HLA-B07:02	SPPQKWLPL	0.9982	0.5344	0.2573	33.3	0.1172	13.96	1/888	1/7086
INDEL	Breast	VAV3_E59del	HLA-C12:03	RAHSINLKI	0.7485	0.9741	0.1369	125.7	0.5529	107.72	1/888	1/7086
INDEL	Breast	VAV3_E59del	HLA-C12:03	HSINLKINL	0.9964	0.9802	0.167	120.1	0.5288	107.72	1/888	1/7086
INDEL	Breast	PXDNL_E109Ffs*11	HLA-C12:03	YLYKNFFLF	0.7375	0.9809	0.8065	144.6	0.6272	3.44	1/888	1/7086
INDEL	Breast	PXDNL_N108Tfs*12	HLA-C12:03	FFFFSMKSM	0.8019	0.9826	0.9993	49.4	0.2168	3.44	1/888	1/7086
INDEL	Breast	CATSPERG_P88Hfs*34	HLA-C12:03	CALWWRTPV	0.8205	0.9952	1.2529	94.2	0.426	14.87	1/888	1/7086
INDEL	Breast	CATSPERG_P88Hfs*34	HLA-A02:01	LLPEDQLLL	0.9911	0.7761	0.2482	55.3	0.6842	14.87	2/888	2/7086
INDEL	Breast	CATSPERG_P88Hfs*34	HLA-A02:01	LLPEDQLLL	0.9911	0.7761	0.2482	55.3	0.6842	14.87	2/888	2/7086
INDEL	Breast	ARSK_I272Hfs*24	HLA-B27:05	GRFTKKEHF	0.9995	0.8863	0.1514	205	0.6329	5.53	1/888	1/7086
INDEL	Breast	ARSK_I272Hfs*24	HLA-B27:05	LRQMPCLVK	0.9986	0.8535	0.9103	170.4	0.5449	5.53	1/888	1/7086
INDEL	Breast	ARSK_I272Hfs*24	HLA-B27:05	RQMPCLVKL	0.9984	0.7694	0.057	103	0.3441	5.53	1/888	1/7086
INDEL	Breast	ARSK_I272Hfs*24	HLA-B27:05	GRFTKKEHFI	0.9998	0.9232	0.2996	428.7	1.1075	5.53	1/888	1/7086
INDEL	Breast	ARSK_I272Hfs*24	HLA-B27:05	LRQMPCLVKL	0.9997	0.7443	0.9059	52.4	0.1677	5.53	1/888	1/7086
INDEL	Breast	ARSK_I272Hfs*24	HLA-A24:02	RQMPCLVKLF	0.9815	0.5302	0.9525	95.9	0.205	5.53	1/888	1/7086
INDEL	Breast	ARSK_I272Hfs*24	HLA-B27:05	RQMPCLVKLF	0.9995	0.7156	0.3137	108.8	0.3629	5.53	1/888	1/7086
INDEL	Breast	ARSK_I272Hfs*24	HLA-B27:05	GRFTKKEHFIM	1	0.8768	0.5213	184.5	0.5791	5.53	1/888	1/7086
INDEL	Breast	SYNGR2_E53Gfs*71	HLA-A24:02	SWPRPSSWW	0.9298	0.8285	1.1173	357	0.537	163.69	1/888	1/7086
INDEL	Breast	SYNGR2_E53Gfs*71	HLA-B27:05	RRTCWWGPTL	0.9998	0.8713	0.7106	13.2	0.0142	163.69	1/888	1/7086
INDEL	Breast	ABCB6_L271Sfs*20	HLA-A02:01	VLICLGSWV	0.9806	0.6131	0.3302	62	0.753	2.42	2/888	2/7086
INDEL	Breast	ABCB6_L271Sfs*20	HLA-A02:01	VLICLGSWV	0.9806	0.6131	0.3302	62	0.753	2.42	2/888	2/7086
INDEL	Breast	DIMT1_N254Tfs*12	HLA-A02:01	QLLEKTTEFTV	0.9963	0.6644	0.8991	35.8	0.4727	24.16	2/888	4/7086
INDEL	Breast	DIMT1_N254Tfs*12	HLA-A02:01	QLLEKTTEFTV	0.9963	0.6644	0.8991	35.8	0.4727	24.16	2/888	4/7086
INDEL	Breast	TCERG1_K957Rfs*17	HLA-A02:01	TLGNFWMKL	0.9626	0.6073	0.8024	128.5	1.2436	17.54	2/888	7/7086
INDEL	Breast	TCERG1_K957Rfs*17	HLA-A02:01	TLGNFWMKL	0.9626	0.6073	0.8024	128.5	1.2436	17.54	2/888	7/7086
INDEL	Breast	DPYSL2_R397Gfs*95	HLA-B07:02	APHWWSSA	0.9985	0.6716	1.9129	329	0.6544	48.48	1/888	1/7086
INDEL	Breast	DPYSL2_R397Gfs*95	HLA-A02:01	ALLWDPMPT	0.9675	0.6227	0.9036	102.2	1.0723	48.48	2/888	2/7086
INDEL	Breast	DPYSL2_R397Gfs*95	HLA-A02:01	ALLWDPMPT	0.9675	0.6227	0.9036	102.2	1.0723	48.48	2/888	2/7086
INDEL	Breast	DPYSL2_R397Gfs*95	HLA-B07:02	FPGSPSLIL	0.9946	0.5195	0.2868	53.6	0.1829	48.48	1/888	1/7086
INDEL	Breast	DPYSL2_R397Gfs*95	HLA-B07:02	KPSLPRHTTAL	1	0.5156	0.1302	10.1	0.0265	48.48	1/888	1/7086
INDEL	Breast	TACC2_Q783Rfs*32	HLA-B07:02	VPHPPRGRT	0.9783	0.6696	0.7473	382.7	0.7146	10.44	1/888	3/7086
INDEL	Breast	KMT2A_K3825Rfs*31	HLA-C07:02	FRHLKRLL	0.998	0.8692	0.8698	466.9	0.3045	12.24	1/888	2/7086
INDEL	Breast	KMT2A_K3825Rfs*31	HLA-A02:01	SMAGVFSV	0.99	0.6899	0.7247	66.6	0.7977	12.24	2/888	2/7086
INDEL	Breast	KMT2A_K3825Rfs*31	HLA-A02:01	SMAGVFSV	0.99	0.6899	0.7247	66.6	0.7977	12.24	2/888	2/7086
INDEL	Breast	KMT2A_K3825Rfs*31	HLA-C07:02	MRFRHLKRL	0.8765	0.8792	0.5347	44.1	0.0179	12.24	1/888	2/7086
INDEL	Breast	KMT2A_K3825Rfs*31	HLA-C07:02	RRQLVSTGL	0.8442	0.9533	0.3787	322.9	0.2137	12.24	1/888	2/7086
INDEL	Breast	KMT2A_K3825Rfs*31	HLA-B44:02	RETLMQVRW	0.9993	0.5584	0.0062	25	0.0211	12.24	1/888	1/7086
INDEL	Breast	KMT2A_K3825Rfs*31	HLA-C07:02	MRFRHLKRLL	0.9823	0.9329	1.2933	218	0.1428	12.24	1/888	2/7086
INDEL	Breast	KMT2A_K3825Rfs*31	HLA-A02:01	GLPSMAGVFSV	0.9788	0.5017	0.7058	9.4	0.1091	12.24	2/888	2/7086
INDEL	Breast	KMT2A_K3825Rfs*31	HLA-A02:01	GLPSMAGVFSV	0.9788	0.5017	0.7058	9.4	0.1091	12.24	2/888	2/7086
INDEL	Breast	SNAPC1_F213Lfs*7	HLA-A02:01	SLIKDDFLTI	0.9914	0.5013	0.0995	31.3	0.419	10.39	2/888	6/7086
INDEL	Breast	SNAPC1_F213Lfs*7	HLA-A02:01	SLIKDDFLTI	0.9914	0.5013	0.0995	31.3	0.419	10.39	2/888	6/7086
INDEL	Breast	SNAPC1_F213Lfs*7	HLA-A02:01	SLIKDDFLTIL	0.9729	0.5958	0.713	86.1	0.9589	10.39	2/888	6/7086
INDEL	Breast	SNAPC1_F213Lfs*7	HLA-A02:01	SLIKDDFLTIL	0.9729	0.5958	0.713	86.1	0.9589	10.39	2/888	6/7086
INDEL	Breast	MAP2K4_D173Tfs*24	HLA-B44:02	REGTVGSVW	0.9983	0.5233	0.0226	25.3	0.022	10.99	1/888	1/7086
INDEL	Breast	RASGRP4_G604Efs*57	HLA-B07:02	APRKITPT	0.9995	0.5628	1.2398	362.7	0.6927	3.34	1/888	1/7086
INDEL	Breast	RASGRP4_G604Efs*57	HLA-B07:02	HPHQLPMPA	0.9972	0.6395	0.1098	54.8	0.1858	3.34	1/888	1/7086
INDEL	Breast	RASGRP4_G604Efs*57	HLA-B07:02	TPTRYPWSL	0.9995	0.7697	0.1112	131.9	0.3599	3.34	1/888	1/7086
INDEL	Breast	RASGRP4_G604Efs*57	HLA-C07:02	TRYPWSLRL	0.827	0.962	0.0037	19	0.0088	3.34	1/888	1/7086
INDEL	Breast	RASGRP4_G604Efs*57	HLA-C07:02	LRLGASFAM	0.9882	0.9514	0.6333	184.9	0.1179	3.34	1/888	1/7086
INDEL	Breast	RASGRP4_G604Efs*57	HLA-B07:02	GPRLNPHTL	0.9998	0.541	0.0177	13.3	0.039	3.34	1/888	1/7086
INDEL	Breast	RASGRP4_G604Efs*57	HLA-B07:02	HPHQLPMPAV	0.9878	0.7504	0.0356	74.9	0.2371	3.34	1/888	1/7086
INDEL	Breast	APMAP_Y316Tfs*29	HLA-B07:02	RPSSSGGTG	0.8101	0.6089	1.4985	242.9	0.5376	413.72	1/888	2/7086
INDEL	Breast	APMAP_Y316Tfs*29	HLA-B07:02	RPSALTLGF	0.9981	0.5157	0.0427	22	0.0775	413.72	1/888	2/7086
INDEL	Breast	APMAP_Y316Tfs*29	HLA-B07:02	RPSSSGGTGWA	0.9966	0.8747	1.726	484.5	0.8154	413.72	1/888	2/7086
INDEL	Breast	SULF2_H226Tfs*43	HLA-B07:02	RPTRTNTGSC	0.9735	0.6845	1.5753	82.2	0.2548	199.59	1/888	1/7086
INDEL	Breast	CCNE2_K344Wfs*20	HLA-B27:05	SRHIQTIWL	0.9988	0.8875	0.0848	106.4	0.3554	7.2	1/888	1/7086
INDEL	Breast	GLI3_F513Lfs*17	HLA-C07:01	SRNPSKPSI	0.9969	0.6694	0.0995	240.2	0.0881	56.43	1/888	1/7086
INDEL	Breast	TBC1D17_R158Afs*73	HLA-A02:01	SLPALHFHA	0.9285	0.6031	0.3866	126.8	1.233	23.8	1/888	1/7086
INDEL	Breast	TBC1D17_R158Afs*73	HLA-A02:01	TLSSPTTPL	0.9293	0.7369	0.3925	192.5	1.6054	23.8	1/888	1/7086
INDEL	Breast	TBC1D17_R158Afs*73	HLA-C02:02	LSSPTTPLL	0.8422	0.9485	0.1317	137.5	0.0624	23.8	1/888	1/7086
INDEL	Breast	MZF1_S607_L610dup	HLA-C07:01	QRLSQRLKL	0.9993	0.6442	0.1227	450.4	0.154	13.33	1/888	1/7086
INDEL	Breast	BAP1_Y671Lfs*37	HLA-B56:01	RPAPQAAEA	0.9828	0.6919	0.1886	136.9	0.0988	52.45	1/888	1/7086
INDEL	Breast	DSP_Y1871Gfs*5	HLA-B15:01	NQWKTQGGGY	0.9995	0.7104	0.6854	353.6	1.3818	695.04	1/888	1/7086
INDEL	Breast	PTCD3_Q417Sfs*35	HLA-B08:01	SQRSRTCL	0.9994	0.5644	0.7247	46.3	0.0784	18.69	1/888	1/7086
INDEL	Breast	PTCD3_Q417Sfs*35	HLA-C12:03	FSVSHEHML	0.9954	0.9829	0.0427	68.7	0.3243	18.69	1/888	1/7086
INDEL	Breast	PTCD3_Q417Sfs*35	HLA-A03:01	CLPSTWPFK	0.9381	0.5984	0.8991	122.9	0.4338	18.69	1/888	1/7086
INDEL	Breast	PTCD3_Q417Sfs*35	HLA-A03:01	RTCLPSTWPFK	0.998	0.6139	0.5723	114	0.4035	18.69	1/888	1/7086
INDEL	Breast	RNF168_R220Tfs*9	HLA-C12:03	QTLEIFRSI	0.891	0.9454	0.1369	278.2	1.031	18.1	1/888	1/7086
INDEL	Breast	JAK2_T742Hfs*11	HLA-C12:03	FGTHFVGNL	0.8313	0.9835	1.1472	154.3	0.6619	13.1	1/888	1/7086
INDEL	Breast	JAK2_T742Hfs*11	HLA-B38:01	THFVGNLQW	0.8742	0.9792	0.0214	166	0.0227	13.1	1/888	1/7086
INDEL	Breast	TBX3_L68Ffs*43	HLA-C12:03	LAKPIMDQF	0.9471	0.9927	0.1302	91.9	0.416	164.38	1/888	1/7086
INDEL	Breast	TBX3_L68Ffs*43	HLA-C07:01	GRDRHPVLL	0.9906	0.8078	0.0686	412.9	0.1433	164.38	1/888	1/7086
INDEL	Breast	AVIL_L595Hfs*19	HLA-B39:01	LHWEGKLPM	0.9981	0.953	0.3577	18.6	0.0115	2.73	1/888	1/7086
INDEL	Breast	AVIL_L595Hfs*19	HLA-B35:01	LPMPMIKDF	0.9965	0.814	0.0383	21.5	0.0886	2.73	1/888	1/7086
INDEL	Breast	CDH1_N166Mfs*49	HLA-C12:03	KARFSTASL	0.9719	0.978	0.4001	33.7	0.1399	57.14	1/888	1/7086
INDEL	Breast	CDH1_N166Mfs*49	HLA-C12:03	STASLAKEL	0.9408	0.986	0.3386	247	0.9539	57.14	1/888	1/7086
INDEL	Breast	CDH1_N166Mfs*49	HLA-B35:01	LAKELTHPL	0.8865	0.9569	0.5279	289.7	0.6291	57.14	1/888	1/7086
INDEL	Breast	CDH1_N166Mfs*49	HLA-C12:03	LAKELTHPL	0.9972	0.9911	0.2122	32	0.1301	57.14	1/888	1/7086
INDEL	Breast	CDH1_N166Mfs*49	HLA-C12:03	LTHPLLVSL	0.9992	0.9794	0.1872	19.5	0.0675	57.14	1/888	1/7086
INDEL	Breast	CDH1_N166Mfs*49	HLA-B39:01	THPLLVSLL	0.9987	0.8899	0.6655	263.9	0.2841	57.14	1/888	1/7086
INDEL	Breast	CDH1_N166Mfs*49	HLA-B39:01	HPLLVSLLL	0.846	0.8548	1.6127	273.3	0.2937	57.14	1/888	1/7086
INDEL	Breast	CDH1_N166Mfs*49	HLA-B35:01	HPLLVSLLL	0.9643	0.7046	0.3235	39.7	0.1538	57.14	1/888	1/7086
INDEL	Breast	PTEN_Y16Lfs*28	HLA-C07:01	SRGWIRLRL	0.9979	0.6139	0.1793	263.5	0.0957	38.24	1/888	1/7086
INDEL	Breast	ALDH1A3_R332_V335dup	HLA-A31:01	EFVRRSVRR	0.8053	0.8027	0.7226	460	1.9843	18.2	1/888	1/7086
INDEL	Breast	ALDH1A3_R332_V335dup	HLA-A31:01	SVRRSVEYAK	0.8159	0.5713	1.7953	292.1	1.5378	18.2	1/888	1/7086
INDEL	Breast	ALDH1A3_R332_V335dup	HLA-A31:01	VYSEFVRRSVR	0.9934	0.7743	1.5252	151.3	1.004	18.2	1/888	1/7086
INDEL	Breast	BRCA1_P1614Qfs*19	HLA-C03:04	VAESAQSQL	0.9979	0.9366	0.2039	264.4	0.6709	3.25	1/888	1/7086
INDEL	Breast	EFEMP2_N260Ifs*32	HLA-A31:01	CIIDIGISR	0.9087	0.589	0.5181	124.4	0.8843	55.15	1/888	1/7086
INDEL	Breast	EFEMP2_N260Ifs*32	HLA-C12:03	ISRRARPFL	0.6918	0.9468	1.4985	457	1.4604	55.15	1/888	1/7086
INDEL	Breast	EFEMP2_N260Ifs*32	HLA-C12:03	RARPFLLPL	0.983	0.9692	0.3495	22.5	0.0824	55.15	1/888	1/7086
INDEL	Breast	EFEMP2_N260Ifs*32	HLA-A02:01	FLLPLPTGL	0.991	0.835	0.0142	5.1	0.0357	55.15	1/888	1/7086
INDEL	Breast	EFEMP2_N260Ifs*32	HLA-C12:03	FLLPLPTGL	0.9889	0.9981	0.1625	67.6	0.3192	55.15	1/888	1/7086
INDEL	Breast	EFEMP2_N260Ifs*32	HLA-B39:01	LPAAGHTPL	0.9287	0.975	0.6058	93.3	0.1007	55.15	1/888	1/7086
INDEL	Breast	EFEMP2_N260Ifs*32	HLA-A31:01	AAGHTPLPR	0.9644	0.796	0.5038	419.5	1.8912	55.15	1/888	1/7086
INDEL	Breast	EFEMP2_N260Ifs*32	HLA-A31:01	CIIDIGISRR	0.939	0.7211	0.9942	289.1	1.5277	55.15	1/888	1/7086
INDEL	Breast	EFEMP2_N260Ifs*32	HLA-A02:01	FLLPLPTGLPA	0.9962	0.6219	0.3254	20.6	0.2812	55.15	1/888	1/7086
INDEL	Breast	ARID1A_M1154Wfs*7	HLA-B35:01	TPQSTSSSW	0.9666	0.652	0.1465	370.9	0.7273	39.71	1/888	1/7086
INDEL	Breast	GMEB1_D12Mfs*22	HLA-C12:03	VSVPVGMWL	0.8557	0.9765	0.2151	77.8	0.3619	16.26	1/888	1/7086
INDEL	Breast	GMEB1_D12Mfs*22	HLA-A24:02	SVPVGMWLW	0.9197	0.817	1.1086	426	0.5933	16.26	1/888	1/7086
INDEL	Breast	GMEB1_D12Mfs*22	HLA-A02:01	WLWYLLKEM	0.8663	0.6438	1.5977	130.1	1.254	16.26	1/888	1/7086
INDEL	Breast	CAPN10_T672Nfs*84	HLA-C12:03	SIMAVMKNL	0.9702	0.9768	1.1142	278.1	1.0307	3.15	1/888	1/7086
INDEL	Breast	VARS_F735Lfs*21	HLA-B38:01	HRIPAYLSL	0.9989	0.8769	0.1317	455.9	0.0766	62.98	1/888	1/7086
INDEL	Breast	VARS_F735Lfs*21	HLA-C12:03	LSVTQRCPL	0.9824	0.9548	1.2493	205.9	0.842	62.98	1/888	1/7086
INDEL	Breast	VARS_F735Lfs*21	HLA-B15:01	TQRCPLGRTL	0.9982	0.9213	1.1117	429.1	1.5471	62.98	1/888	1/7086
INDEL	Breast	MICU3_P199Hfs*19	HLA-B15:01	QMLAETHQF	0.9969	0.7657	0.1418	105.7	0.5506	2.21	1/888	1/7086
INDEL	Breast	MICU3_P199Hfs*19	HLA-C12:03	KAHRSYFEI	0.8053	0.9758	1.0891	286.6	1.0536	2.21	1/888	1/7086
INDEL	Breast	MICU3_P199Hfs*19	HLA-B15:01	NQMLAETHQF	0.9997	0.7017	0.3851	88.1	0.47	2.21	1/888	1/7086
INDEL	Breast	MICU3_P199Hfs*19	HLA-B15:01	HQFGKAHRSY	0.9999	0.9191	0.1336	12.9	0.0326	2.21	1/888	1/7086
INDEL	Breast	MICU3_P199Hfs*19	HLA-B15:01	HQFGKAHRSYF	0.9999	0.9079	0.2213	54.6	0.2843	2.21	1/888	1/7086
INDEL	Breast	CDC16_E183Dfs*27	HLA-B38:01	NRNCCVFYL	0.9938	0.9863	1.0757	311.3	0.0496	72.6	1/888	1/7086
INDEL	Breast	CDC16_E183Dfs*27	HLA-B38:01	NHYPLASCVM	0.9951	0.9699	0.6252	305.3	0.0486	72.6	1/888	1/7086
INDEL	Breast	CDC16_E183Dfs*27	HLA-B15:01	VMKNRNCCVF	0.9985	0.9179	1.182	28.9	0.1335	72.6	1/888	1/7086
INDEL	Breast	CDC16_E183Dfs*27	HLA-B15:01	AQEEKDFLNHY	0.9998	0.8704	0.3302	237	1.0378	72.6	1/888	1/7086
INDEL	Breast	RBBP6_R835Kfs*60	HLA-C12:03	SGMKNIIKV	0.8405	0.9506	0.3367	469	1.4854	38.85	1/888	1/7086
INDEL	Breast	RBBP6_R835Kfs*60	HLA-B15:01	GMKNIIKVM	0.9962	0.9231	0.3769	97.4	0.5137	38.85	1/888	1/7086
INDEL	Breast	RBBP6_R835Kfs*60	HLA-C12:03	KVMLLEHSL	0.9019	0.9894	0.4529	493	1.5343	38.85	1/888	1/7086
INDEL	Breast	RBBP6_R835Kfs*60	HLA-A02:01	FLQRDFCHL	0.9851	0.6937	0.1112	11.7	0.1405	38.85	1/888	1/7086
INDEL	Breast	RBBP6_R835Kfs*60	HLA-C12:03	EAAEKTMLV	0.7905	0.9542	0.3302	372.4	1.2748	38.85	1/888	1/7086
INDEL	Breast	RBBP6_R835Kfs*60	HLA-A02:01	MLVGKVIEV	0.9991	0.6794	0.0005	4	0.0186	38.85	1/888	1/7086
INDEL	Breast	RBBP6_R835Kfs*60	HLA-C12:03	MLVGKVIEV	0.9835	0.9896	0.033	214.2	0.8671	38.85	1/888	1/7086
INDEL	Breast	RBBP6_R835Kfs*60	HLA-A02:01	TMLVGKVIEV	0.9919	0.6602	0.1547	28.5	0.385	38.85	1/888	1/7086
INDEL	Breast	RBBP6_R835Kfs*60	HLA-A02:01	KTMLVGKVIEV	0.9873	0.6908	1.4522	143.4	1.338	38.85	1/888	1/7086
INDEL	Breast	TCF25_S293Afs*17	HLA-A02:01	SLLQLAMPA	0.9604	0.7512	0.3514	33.4	0.4448	33.88	1/888	1/7086
INDEL	Breast	TCF25_S293Afs*17	HLA-A02:01	LLQLAMPAA	0.9362	0.564	0.9621	126.1	1.2288	33.88	1/888	1/7086
INDEL	Breast	TCF25_S293Afs*17	HLA-B15:01	LQLAMPAAF	0.9963	0.9787	0.251	9.4	0.0158	33.88	1/888	1/7086
INDEL	Breast	TCF25_S293Afs*17	HLA-C12:03	LQLAMPAAF	0.6571	0.9941	1.6226	432.1	1.4068	33.88	1/888	1/7086
INDEL	Breast	TCF25_S293Afs*17	HLA-A02:01	SLLQLAMPAA	0.9553	0.8223	0.5094	94.6	1.0221	33.88	1/888	1/7086
INDEL	Breast	TCF25_S293Afs*17	HLA-B38:01	YHVDSLLQLAM	0.9991	0.9865	0.296	478.6	0.0813	33.88	1/888	1/7086
INDEL	Breast	YTHDF3_I437Yfs*4	HLA-B27:05	HRSIKYSYL	0.9989	0.8223	0.2239	341.6	0.9396	24.47	1/888	1/7086
INDEL	Breast	YTHDF3_I437Yfs*4	HLA-A02:01	RSIKYSYLV	0.917	0.5665	0.1821	256	1.928	24.47	2/888	2/7086
INDEL	Breast	YTHDF3_I437Yfs*4	HLA-A02:01	RSIKYSYLV	0.917	0.5665	0.1821	256	1.928	24.47	2/888	2/7086
INDEL	Breast	RAPGEF3_N542Tfs*31	HLA-C14:02	VWLPTRTSPF	0.9443	0.9709	0.5657	207.8	0.6299	10	1/888	1/7086
INDEL	Breast	RAPGEF3_N542Tfs*31	HLA-A02:01	FLAAAVPSKL	0.995	0.6649	0.2482	11.5	0.1378	10	2/888	2/7086
INDEL	Breast	RAPGEF3_N542Tfs*31	HLA-A02:01	FLAAAVPSKL	0.995	0.6649	0.2482	11.5	0.1378	10	2/888	2/7086
INDEL	Breast	RAPGEF3_N542Tfs*31	HLA-B27:05	ARNLPVWLPTR	1	0.5966	0.5328	321.9	0.8961	10	1/888	1/7086
INDEL	Breast	TBX3_N333Kfs*28	HLA-A02:01	RLLLQPPPL	0.9617	0.7536	0.3152	44.3	0.5686	91.87	1/888	1/7086
INDEL	Breast	ESR1_P29Sfs*79	HLA-A02:06	RSAPTAWGV	0.8572	0.8068	0.1514	34	0.4335	239.1	1/888	1/7086
INDEL	Breast	ZNF142_S502Cfs*8	HLA-C05:01	RADQLSCGI	0.9995	0.9552	0.5757	150.3	0.0768	9.87	1/888	1/7086
INDEL	Breast	BCL9_V837Gfs*21	HLA-B58:01	GSPWIYLW	0.9976	0.8134	1.182	92.3	0.4512	22.39	1/888	1/7086
INDEL	Breast	BCL9_V837Gfs*21	HLA-B58:01	NTAPPGSPW	0.98	0.9522	0.0299	61.1	0.3337	22.39	1/888	1/7086
INDEL	Breast	BCL9_V837Gfs*21	HLA-B58:01	PGSPWIYLW	0.975	0.9154	0.6737	130.2	0.573	22.39	1/888	1/7086
INDEL	Breast	BCL9_V837Gfs*21	HLA-A34:02	WIYLWQAAR	0.7833	0.5941	0.8607	202.5	0.3998	22.39	1/888	1/7086
INDEL	Breast	BCL9_V837Gfs*21	HLA-B58:01	LNTAPPGSPW	0.9878	0.9695	1.6372	30.3	0.1965	22.39	1/888	1/7086
INDEL	Breast	BCL9_V837Gfs*21	HLA-B58:01	SLNTAPPGSPW	0.9707	0.9771	1.314	197.7	0.77	22.39	1/888	1/7086
INDEL	Breast	KAT6A_H1439Qfs*100	HLA-B08:01	CPWLKTVM	0.9936	0.9014	0.3089	179.3	0.3173	39.42	1/888	1/7086
INDEL	Breast	KAT6A_H1439Qfs*100	HLA-A02:01	SLTPASQSV	0.9739	0.6645	0.251	78.6	0.8962	39.42	1/888	1/7086
INDEL	Breast	KAT6A_H1439Qfs*100	HLA-C07:01	VRSAVPTCL	0.9944	0.6906	0.0441	168.2	0.065	39.42	1/888	1/7086
INDEL	Breast	KIAA0586_E194Dfs*38	HLA-C07:01	FRGNKRNYI	0.9322	0.6853	0.7247	77.7	0.0251	6.39	1/888	1/7086
INDEL	Breast	WDR93_V449Gfs*30	HLA-B08:01	MFLPKHSL	0.9988	0.8841	0.2825	142.8	0.2557	3.86	1/888	1/7086
INDEL	Breast	WDR93_V449Gfs*30	HLA-A02:01	GMFLPKHSL	0.889	0.6253	0.1302	245.7	1.8781	3.86	1/888	1/7086
INDEL	Breast	WDR93_V449Gfs*30	HLA-A02:01	FLPKHSLPKI	0.9696	0.6423	0.051	64.4	0.7765	3.86	1/888	1/7086
INDEL	Breast	WDR93_V449Gfs*30	HLA-A02:01	FLGPQRTEYV	0.9959	0.6163	0.4808	12.3	0.1473	3.86	1/888	1/7086
INDEL	Breast	GPR3_V150Dfs*119	HLA-C16:01	AAACAGLEL	0.9266	0.9882	0.0671	59.3	0.2004	2.41	1/888	1/7086
INDEL	Breast	GPR3_V150Dfs*119	HLA-C16:01	HMWRGLSTL	0.9682	0.9857	0.5601	93.4	0.3265	2.41	1/888	1/7086
INDEL	Breast	GPR3_V150Dfs*119	HLA-C16:01	GVWHHAAAL	0.9396	0.9852	0.6429	204.8	0.6759	2.41	1/888	1/7086
INDEL	Breast	GPR3_V150Dfs*119	HLA-B07:02	HAAALRPNL	0.9879	0.5332	0.5002	417.6	0.7508	2.41	1/888	1/7086
INDEL	Breast	GPR3_V150Dfs*119	HLA-C16:01	HAAALRPNL	0.9889	0.988	0.2636	66.3	0.2289	2.41	1/888	1/7086
INDEL	Breast	GPR3_V150Dfs*119	HLA-C07:02	LRPNLPHRL	0.8822	0.9398	0.0441	141.5	0.0789	2.41	1/888	1/7086
INDEL	Breast	GPR3_V150Dfs*119	HLA-C16:01	AAPAACLPL	0.8043	0.9731	0.2557	233.4	0.7606	2.41	1/888	1/7086
INDEL	Breast	GPR3_V150Dfs*119	HLA-C16:01	HTGRGAWSL	0.6893	0.9889	1.4654	464.2	1.3096	2.41	1/888	1/7086
INDEL	Breast	GPR3_V150Dfs*119	HLA-B07:02	RPNLPHRLPP	0.9913	0.6192	0.4367	342.3	0.67	2.41	1/888	1/7086
INDEL	Breast	GPR3_V150Dfs*119	HLA-B07:02	LPHRLPPCPA	0.9914	0.5887	0.721	109.7	0.3175	2.41	1/888	1/7086
INDEL	Breast	GPR3_V150Dfs*119	HLA-B07:02	CPSAAPAACL	0.993	0.5029	0.5454	95.7	0.2872	2.41	1/888	1/7086
INDEL	Breast	GPR3_V150Dfs*119	HLA-C16:01	SAAPAACLPL	0.9813	0.9623	0.5795	215.8	0.707	2.41	1/888	1/7086
INDEL	Breast	GPR3_V150Dfs*119	HLA-B44:03	LELPGWPDHMW	0.9997	0.9873	0.1182	289.3	0.2922	2.41	1/888	1/7086
INDEL	Breast	NBPF12_E582Rfs*22	HLA-C07:02	FRSLKREMF	0.8948	0.9557	0.2825	79.9	0.0409	2.7	1/888	1/7086
INDEL	Breast	NBPF12_E582Rfs*22	HLA-B44:03	REMFCNSSGL	0.8708	0.814	1.3176	166.4	0.1866	2.7	1/888	1/7086
INDEL	Breast	RAPGEF4_A549Gfs*24	HLA-B07:02	GPLPRTAF	0.9996	0.6918	0.637	113	0.3242	3.69	1/888	1/7086
INDEL	Breast	RAPGEF4_A549Gfs*24	HLA-B07:02	CPGGPLPRTAF	0.9999	0.6467	0.4933	445.7	0.778	3.69	1/888	1/7086
INDEL	Breast	EFTUD1_Q457Hfs*8	HLA-B44:03	AEKLAAAHPRW	0.9996	0.9233	0.1014	77.3	0.0919	30.02	1/888	1/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-B35:01	HAHADAPAI	0.8806	0.9418	0.6837	193.4	0.4819	1197.41	3/888	3/7086
INDEL	Breast	ASPH_H127Lfs*65	HLA-C07:01	WRQNPRISKM	0.9978	0.7375	0.6818	326	0.1176	71.19	2/888	2/7086
INDEL	Breast	ASPH_H127Lfs*65	HLA-C07:01	WRQNPRISKM	0.9978	0.7375	0.6818	326	0.1176	71.19	2/888	2/7086
INDEL	Breast	SMG1_Y143Ffs*28	HLA-C07:01	ERSMSFILM	0.9985	0.673	0.7749	429.6	0.1476	25.87	2/888	2/7086
INDEL	Breast	SMG1_Y143Ffs*28	HLA-C07:01	ERSMSFILM	0.9985	0.673	0.7749	429.6	0.1476	25.87	2/888	2/7086
INDEL	Breast	ADAMTS1_P478Vfs*26	HLA-A02:01	YIWGGLQTL	0.9866	0.5322	0.0025	7.1	0.0686	27.92	1/888	1/7086
INDEL	Breast	DNAH1_K3858Rfs*38	HLA-B15:03	RSITGAVSL	0.9867	0.8892	0.2653	45.9	0.8103	3.37	1/888	1/7086
INDEL	Breast	DNAH1_K3858Rfs*38	HLA-C02:10	RSITGAVSL	0.9441	0.9814	0.1401	471.5	0.3249	3.37	1/888	1/7086
INDEL	Breast	DNAH1_K3858Rfs*38	HLA-C02:10	RSITGAVSLM	0.974	0.9775	0.6737	499.8	0.3509	3.37	1/888	1/7086
INDEL	Breast	ZNF292_E2054Kfs*14	HLA-B15:03	TKFFTSDYSY	0.8349	0.5943	0.1498	25.4	0.4557	26.17	1/888	1/7086
INDEL	Breast	ZNF292_E2054Kfs*14	HLA-B15:03	TKFFTSDYSYF	0.8667	0.5889	0.6837	73.1	1.1602	26.17	1/888	1/7086
INDEL	Breast	MGA_G843Vfs*30	HLA-B35:01	FPLRVPVM	0.992	0.9582	0.1302	147.9	0.4046	11.03	2/888	2/7086
INDEL	Breast	MGA_G843Vfs*30	HLA-B35:01	FPLRVPVM	0.992	0.9582	0.1302	147.9	0.4046	11.03	2/888	2/7086
INDEL	Breast	MGA_G843Vfs*30	HLA-B35:01	KLMETSMVF	0.9321	0.9038	0.8065	289.8	0.6292	11.03	2/888	2/7086
INDEL	Breast	MGA_G843Vfs*30	HLA-B35:01	KLMETSMVF	0.9321	0.9038	0.8065	289.8	0.6292	11.03	2/888	2/7086
INDEL	Breast	MGA_G843Vfs*30	HLA-B35:01	FPLRVPVMY	0.999	0.9697	0.0142	4.8	0.0141	11.03	2/888	2/7086
INDEL	Breast	MGA_G843Vfs*30	HLA-B35:01	FPLRVPVMY	0.999	0.9697	0.0142	4.8	0.0141	11.03	2/888	2/7086
INDEL	Breast	MGA_G843Vfs*30	HLA-B35:01	VMYEHLIVY	0.9671	0.7612	0.0315	59.6	0.2222	11.03	2/888	2/7086
INDEL	Breast	MGA_G843Vfs*30	HLA-B35:01	VMYEHLIVY	0.9671	0.7612	0.0315	59.6	0.2222	11.03	2/888	2/7086
INDEL	Breast	MGA_G843Vfs*30	HLA-B35:01	LPHLLWCTSF	0.996	0.9061	0.5213	118.4	0.3555	11.03	2/888	2/7086
INDEL	Breast	MGA_G843Vfs*30	HLA-B35:01	LPHLLWCTSF	0.996	0.9061	0.5213	118.4	0.3555	11.03	2/888	2/7086
INDEL	Breast	MGA_G843Vfs*30	HLA-B35:01	VPVMYEHLIVY	0.9987	0.6772	0.7514	96.8	0.3121	11.03	2/888	2/7086
INDEL	Breast	MGA_G843Vfs*30	HLA-B35:01	VPVMYEHLIVY	0.9987	0.6772	0.7514	96.8	0.3121	11.03	2/888	2/7086
INDEL	Breast	KHDC1_E106Rfs*37	HLA-B15:01	SSGMVTHTF	0.8892	0.818	0.4916	304.7	1.2503	1.83	1/888	1/7086
INDEL	Breast	KHDC1_E106Rfs*37	HLA-B15:01	MVTHTFAAL	0.8344	0.8272	1.2899	186.5	0.8663	1.83	1/888	1/7086
INDEL	Breast	KHDC1_E106Rfs*37	HLA-C12:03	MVTHTFAAL	0.9793	0.9465	0.6058	41.7	0.1799	1.83	1/888	1/7086
INDEL	Breast	KHDC1_E106Rfs*37	HLA-B15:01	ALRCTATPL	0.9911	0.9248	1.1056	111.5	0.5749	1.83	1/888	1/7086
INDEL	Breast	KHDC1_E106Rfs*37	HLA-C12:03	FSWRVGSQL	0.9974	0.972	0.4183	28.7	0.1141	1.83	1/888	1/7086
INDEL	Breast	KHDC1_E106Rfs*37	HLA-B15:01	SSSGMVTHTF	0.9977	0.8429	0.8629	213.6	0.96	1.83	1/888	1/7086
INDEL	Breast	KHDC1_E106Rfs*37	HLA-B15:01	ALRCTATPLF	0.9996	0.9003	1.4064	17.7	0.0635	1.83	1/888	1/7086
INDEL	Breast	KMT2C_N3815Kfs*72	HLA-C07:01	KRRNKLCTL	0.9902	0.7433	0.704	489.1	0.1669	7.61	2/888	2/7086
INDEL	Breast	KMT2C_N3815Kfs*72	HLA-C07:01	KRRNKLCTL	0.9902	0.7433	0.704	489.1	0.1669	7.61	2/888	2/7086
INDEL	Breast	PPP6R3_G563Tfs*113	HLA-B08:01	LPCLKHVV	0.9971	0.7954	0.5757	484.9	0.7481	16	2/888	2/7086
INDEL	Breast	PPP6R3_G563Tfs*113	HLA-B08:01	LPCLKHVV	0.9971	0.7954	0.5757	484.9	0.7481	16	2/888	2/7086
INDEL	Breast	PPP6R3_G563Tfs*113	HLA-C07:01	VRKEYNSLM	0.9832	0.8275	0.458	75	0.0241	16	2/888	2/7086
INDEL	Breast	PPP6R3_G563Tfs*113	HLA-C07:01	VRKEYNSLM	0.9832	0.8275	0.458	75	0.0241	16	2/888	2/7086
INDEL	Breast	PPP6R3_G563Tfs*113	HLA-C07:01	MRSLQIKMTL	0.999	0.7157	0.9014	214.6	0.0809	16	2/888	2/7086
INDEL	Breast	PPP6R3_G563Tfs*113	HLA-C07:01	MRSLQIKMTL	0.999	0.7157	0.9014	214.6	0.0809	16	2/888	2/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-C03:03	ATVPRHSSV	0.9162	0.9634	0.719	402.2	0.8628	57.68	1/888	6/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-C03:03	HSSVLATGL	0.9978	0.9961	1.1027	363.8	0.8083	57.68	1/888	6/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-C03:03	SVLATGLHL	0.9974	0.9967	0.3283	132.1	0.4331	57.68	1/888	6/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-C03:03	ISLPLRGFL	0.9935	0.9854	0.9173	351.5	0.7917	57.68	1/888	6/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-B35:01	LPLRGFLLH	0.8955	0.8992	0.6929	208.2	0.5042	57.68	1/888	7/7086
INDEL	Breast	DAZAP1_P257Rfs*78	HLA-B15:01	RQISLPLRGF	0.9994	0.704	0.0452	14.7	0.0382	57.68	1/888	2/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-B35:01	SASESDAGY	0.8835	0.5771	0.5471	22	0.0907	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-B15:01	SASESDAGY	0.7628	0.6936	1.1	423.1	1.5354	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-C03:03	KADPTIPTV	0.9744	0.9901	0.0481	149.6	0.468	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-B35:01	LPIPGIHCL	0.9876	0.7954	0.0052	19.3	0.0789	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-C03:03	LPIPGIHCL	0.9825	0.9823	0.0427	239	0.6305	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-B35:01	IPGIHCLSF	0.9926	0.6905	0.2446	77.7	0.2664	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-B35:01	FCAPSNAHF	0.9846	0.8896	0.9455	246.3	0.5682	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-C03:03	FCAPSNAHF	0.992	0.9876	0.6018	174.2	0.5138	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-C03:03	HALSRRLHL	0.9984	0.9921	0.4548	114.3	0.3938	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-B35:01	LPDAGHLGH	0.9706	0.7308	0.7247	320.3	0.6663	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-C03:03	VGHGLGHAL	0.9989	0.9826	0.356	215.9	0.5911	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-C03:03	HALPHLPAA	0.9928	0.991	0.1255	154.2	0.4765	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-B35:01	LPHLPAAAL	0.9929	0.9475	0.0073	29.3	0.1169	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-C03:03	LPHLPAAAL	0.9957	0.9931	0.0481	238.9	0.6304	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-B35:01	LPAAALPRL	0.9931	0.9202	0.033	100.1	0.3193	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-C03:03	LVASAGRPV	0.74	0.9884	1.1142	109.1	0.3831	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-B35:01	RPVPSQLAL	0.9702	0.556	0.2996	160.6	0.4283	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-C03:03	RPVPSQLAL	0.9875	0.9481	0.6058	130.8	0.4303	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-A03:01	ALLPPVLRR	0.9897	0.7543	0.1317	134.6	0.4707	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-B35:01	LAAAHPAAL	0.9653	0.9338	0.2699	54.2	0.2077	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-C03:03	LAAAHPAAL	0.9998	0.9915	0.0904	2.9	0.0077	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-B35:01	HPAALHQRL	0.995	0.7341	0.0396	187.2	0.4726	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-B15:01	ASASESDAGY	0.9714	0.7475	1.4985	397	1.4818	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-C03:03	ALAAAHPAAL	0.9955	0.9872	0.7749	293.8	0.714	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-B35:01	LPIPGIHCLSF	0.9996	0.696	0.251	68.9	0.244	71.08	1/888	1/7086
INDEL	Breast	RUNX1_F232Sfs*338	HLA-C03:03	HALPHLPAAAL	0.9999	0.9948	0.0962	430	0.8991	71.08	1/888	1/7086
INDEL	Breast	KMT2B_K553Nfs*52	HLA-B35:03	FPRSQHQSPL	0.971	0.6483	0.9841	350	0.0565	21.23	1/888	2/7086
INDEL	Breast	FMN1_D1014Afs*49	HLA-C07:02	IRAPVNLSI	0.9106	0.8144	0.051	104.1	0.0567	3.26	2/888	2/7086
INDEL	Breast	FMN1_D1014Afs*49	HLA-C07:02	IRAPVNLSI	0.9106	0.8144	0.051	104.1	0.0567	3.26	2/888	2/7086
INDEL	Breast	SRGAP3_P887Qfs*55	HLA-B07:02	TPQRTKPGL	0.9993	0.5748	0.0762	43.6	0.154	1.04	1/888	1/7086
INDEL	Breast	SRGAP3_P887Qfs*55	HLA-B07:02	SPGGGSRAL	0.9997	0.5317	0.0601	9.8	0.0254	1.04	1/888	1/7086
INDEL	Breast	SRGAP3_P887Qfs*55	HLA-B07:02	TPQRTKPGLL	0.9976	0.5994	0.3685	89.4	0.2726	1.04	1/888	1/7086
INDEL	Breast	SRGAP3_P887Qfs*55	HLA-A03:01	LLPAPAAPTK	0.992	0.76	0.7226	98	0.3592	1.04	1/888	1/7086
INDEL	Breast	SRGAP3_P887Qfs*55	HLA-B07:02	SPSPGGGSRAL	1	0.5876	0.1514	24.5	0.0884	1.04	1/888	1/7086
INDEL	Breast	FLT3LG_L24Pfs*75	HLA-B07:02	GPRTAPSNTA	0.9982	0.5634	0.5491	91.1	0.2768	1.11	1/888	1/7086
INDEL	Breast	AVPR2_D85_V88delinsE	HLA-A02:01	CLAEALFQV	0.9986	0.8626	0.0166	2.9	0.0087	4.18	1/888	1/7086
INDEL	Breast	AVPR2_D85_V88delinsE	HLA-A02:01	CLAEALFQVL	0.9966	0.803	0.9381	35.5	0.4687	4.18	1/888	1/7086
INDEL	Breast	AVPR2_D85_V88delinsE	HLA-A02:01	HLCLAEALFQV	0.9884	0.8845	1.432	22.9	0.3143	4.18	1/888	1/7086
INDEL	Breast	RB1_E551Nfs*60	HLA-C14:02	HGSQIHLYL	0.9871	0.9255	1.3273	444.5	1.2237	14.6	1/888	1/7086
INDEL	Breast	RB1_E551Nfs*60	HLA-C03:04	HGSQIHLYL	0.985	0.9246	0.1369	295	0.7158	14.6	1/888	1/7086
INDEL	Breast	RB1_E551Nfs*60	HLA-A31:01	YLILLNNQR	0.9113	0.5259	0.7594	347.6	1.6977	14.6	1/888	1/7086
INDEL	Breast	RB1_E551Nfs*60	HLA-C03:04	LITLNLLVL	0.9678	0.9809	1.1987	411.2	0.8748	14.6	1/888	1/7086
INDEL	Breast	RB1_E551Nfs*60	HLA-A31:01	LVLLIFLSR	0.9273	0.5157	0.511	137.7	0.9461	14.6	1/888	1/7086
INDEL	Breast	RB1_E551Nfs*60	HLA-A31:01	LYLILLNNQR	0.9557	0.507	1.2933	174.1	1.0929	14.6	1/888	1/7086
INDEL	Breast	ZNF10_Y449Ifs*85	HLA-A30:01	RSSHLIHIK	0.9991	0.7598	0.1514	28.6	0.136	3.95	1/888	1/7086
INDEL	Breast	ZNF10_Y449Ifs*85	HLA-B57:03	MSVMIVENL	0.9788	0.955	0.4865	214.8	0.4165	3.95	1/888	1/7086
INDEL	Breast	ZNF10_Y449Ifs*85	HLA-B57:03	LSARVLPLL	0.9955	0.9756	0.2102	75.3	0.1606	3.95	1/888	1/7086
INDEL	Breast	ZNF10_Y449Ifs*85	HLA-A30:01	HMNAVSVGK	0.9854	0.8115	0.262	71.7	0.3648	3.95	1/888	1/7086
INDEL	Breast	ZNF10_Y449Ifs*85	HLA-B57:03	MTSLSTREF	0.9907	0.9866	0.3268	87.4	0.1871	3.95	1/888	1/7086
INDEL	Breast	ZNF10_Y449Ifs*85	HLA-A30:01	STREFMLEK	0.9988	0.807	0.0121	6.4	0.0119	3.95	1/888	1/7086
INDEL	Breast	ZNF10_Y449Ifs*85	HLA-B57:03	VALSSARTL	0.9508	0.9909	0.1734	426.5	0.7065	3.95	1/888	1/7086
INDEL	Breast	ZNF10_Y449Ifs*85	HLA-B57:03	RMTSLSTREF	0.9755	0.9849	1.1225	304.9	0.5467	3.95	1/888	1/7086
INDEL	Breast	ZNF10_Y449Ifs*85	HLA-A30:01	STREFMLEKR	0.982	0.8633	1.3176	240.1	1.1182	3.95	1/888	1/7086
INDEL	Breast	FOXK2_A425Kfs*102	HLA-C07:01	ARFAQSKHL	0.9979	0.8651	0.1718	327.1	0.118	13.88	1/888	1/7086
INDEL	Breast	FOXK2_A425Kfs*102	HLA-A30:01	ASLNHRPAA	0.8156	0.9479	1.2592	24.7	0.1053	13.88	1/888	1/7086
INDEL	Breast	FBXO31_R461Qfs*43	HLA-C16:01	RATASPAL	0.9813	0.9702	0.7726	392.5	1.1475	11.51	1/888	1/7086
INDEL	Breast	FBXO31_R461Qfs*43	HLA-C16:01	YPQPAGCVF	0.5727	0.9789	0.3089	174.3	0.5855	11.51	1/888	1/7086
INDEL	Breast	FBXO31_R461Qfs*43	HLA-A02:01	FMAQASSRA	0.9823	0.7105	0.458	79.3	0.9018	11.51	1/888	1/7086
INDEL	Breast	MAP3K1_A858Lfs*16	HLA-B08:01	LLQMRWKL	0.9895	0.9513	0.8607	37.3	0.0611	123.48	2/888	2/7086
INDEL	Breast	MAP3K1_A858Lfs*16	HLA-B08:01	LLQMRWKL	0.9895	0.9513	0.8607	37.3	0.0611	123.48	2/888	2/7086
INDEL	Breast	MAP3K1_A858Lfs*16	HLA-C07:01	TRMRRRLML	0.9949	0.636	0.193	45.7	0.0136	123.48	2/888	2/7086
INDEL	Breast	MAP3K1_A858Lfs*16	HLA-C07:01	TRMRRRLML	0.9949	0.636	0.193	45.7	0.0136	123.48	2/888	2/7086
INDEL	Breast	MAP3K1_A858Lfs*16	HLA-A02:01	MLLQMRWKL	0.9615	0.6533	0.2482	17.7	0.2326	123.48	1/888	1/7086
INDEL	Breast	MAP3K1_A858Lfs*16	HLA-B08:01	MLLQMRWKL	0.9337	0.9674	0.8629	55.9	0.101	123.48	2/888	2/7086
INDEL	Breast	MAP3K1_A858Lfs*16	HLA-B08:01	MLLQMRWKL	0.9337	0.9674	0.8629	55.9	0.101	123.48	2/888	2/7086
INDEL	Breast	MAP3K1_A858Lfs*16	HLA-C07:01	TRMRRRLMLL	0.9977	0.5952	1.12	312.2	0.113	123.48	2/888	2/7086
INDEL	Breast	MAP3K1_A858Lfs*16	HLA-C07:01	TRMRRRLMLL	0.9977	0.5952	1.12	312.2	0.113	123.48	2/888	2/7086
INDEL	Breast	ZFYVE27_Q68Rfs*8	HLA-B08:01	LLRWRCLCV	0.9551	0.938	0.9079	58.8	0.1055	44.53	2/888	2/7086
INDEL	Breast	ZFYVE27_Q68Rfs*8	HLA-B08:01	LLRWRCLCV	0.9551	0.938	0.9079	58.8	0.1055	44.53	2/888	2/7086
INDEL	Breast	ZFYVE27_Q68Rfs*8	HLA-A02:01	YLLRWRCLCV	0.9712	0.8996	0.8247	51.7	0.6472	44.53	1/888	1/7086
INDEL	Breast	GATA3_M400Nfs*107	HLA-A02:01	VLPEPHLAL	0.9817	0.6795	0.0745	139	1.3078	1189.71	1/888	1/7086
INDEL	Breast	GATA3_M400Nfs*107	HLA-A02:01	AIQPVLWTT	0.7836	0.8093	1.192	249.4	1.8972	1189.71	1/888	1/7086
INDEL	Breast	GPS2_Q157Kfs*188	HLA-C15:02	TTWAQQLLL	0.9967	0.9451	0.3386	126	0.1289	1.84	1/888	1/7086
INDEL	Breast	GPS2_Q157Kfs*188	HLA-C15:02	LTMGPHSQL	0.9992	0.9288	0.1369	50.4	0.0351	1.84	1/888	1/7086
INDEL	Breast	GPS2_Q157Kfs*188	HLA-C15:02	HSLQCSTYL	0.998	0.9153	0.6295	199.9	0.2185	1.84	1/888	1/7086
INDEL	Breast	GPS2_Q157Kfs*188	HLA-C15:02	LSHSHSPML	0.9984	0.8119	0.4277	88.3	0.0768	1.84	1/888	1/7086
INDEL	Breast	GPS2_Q157Kfs*188	HLA-C15:02	HSHSPMLCM	0.9845	0.8271	0.6737	225.9	0.2453	1.84	1/888	1/7086
INDEL	Breast	GPS2_Q157Kfs*188	HLA-C15:02	ATFSPLRQV	0.9997	0.9259	0.0523	80.9	0.069	1.84	1/888	1/7086
INDEL	Breast	GPS2_Q157Kfs*188	HLA-B27:05	SRWNMLTSR	0.9995	0.8349	0.1272	15.5	0.0178	1.84	1/888	1/7086
INDEL	Breast	GPS2_Q157Kfs*188	HLA-C15:02	RALQLPANL	0.9986	0.9772	0.4167	173.4	0.1894	1.84	1/888	1/7086
INDEL	Breast	GPS2_Q157Kfs*188	HLA-C15:02	LTMGPHSQLI	0.999	0.9302	1.0524	273.8	0.2963	1.84	1/888	1/7086
INDEL	Breast	GPS2_Q157Kfs*188	HLA-B27:05	LRHSLQCSTY	0.9998	0.9521	0.6252	179.2	0.5665	1.84	1/888	1/7086
INDEL	Breast	GPS2_Q157Kfs*188	HLA-B27:05	SRWNMLTSRL	0.9998	0.8099	0.4426	9.5	0.0091	1.84	1/888	1/7086
INDEL	Breast	GPS2_Q157Kfs*188	HLA-B27:05	SRLASPTHPL	0.9999	0.9313	0.5795	111.9	0.3729	1.84	1/888	1/7086
INDEL	Breast	GPS2_Q157Kfs*188	HLA-B27:05	SRALQLPANL	0.9999	0.8262	0.7573	111.7	0.3721	1.84	1/888	1/7086
INDEL	Breast	GPS2_Q157Kfs*188	HLA-B27:05	LRHSLQCSTYL	0.9996	0.9574	1.9404	331.7	0.9177	1.84	1/888	1/7086
INDEL	Breast	GPS2_Q157Kfs*188	HLA-B27:05	SRWNMLTSRLA	0.9996	0.7453	0.6556	82.8	0.2754	1.84	1/888	1/7086
INDEL	Breast	BMI1_A262Sfs*13	HLA-C14:02	RYSLHLFL	0.8688	0.9869	0.7905	431.4	1.1917	7.17	1/888	1/7086
INDEL	Breast	BMI1_A262Sfs*13	HLA-C07:01	SRRYSLHLF	0.9957	0.7896	0.5213	177.2	0.068	7.17	1/888	1/7086
INDEL	Breast	BMI1_A262Sfs*13	HLA-C07:01	RRYSLHLFL	0.9984	0.7326	0.0745	26	0.0091	7.17	1/888	1/7086
INDEL	Breast	BMI1_A262Sfs*13	HLA-C07:01	SRRYSLHLFL	0.9944	0.8527	0.9129	213.7	0.0806	7.17	1/888	1/7086
INDEL	Breast	BMI1_A262Sfs*13	HLA-C07:01	RRYSLHLFLF	0.9986	0.6278	0.1435	265.7	0.0964	7.17	1/888	1/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-C07:01	LRMFLRLGV	0.9167	0.7128	0.8884	179.4	0.0687	7.63	1/888	1/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-A02:01	FLRLGVPQV	0.9833	0.5547	0.033	18.1	0.2398	7.63	2/888	2/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-A02:01	FLRLGVPQV	0.9833	0.5547	0.033	18.1	0.2398	7.63	2/888	2/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-C07:01	LRLGVPQVV	0.9561	0.7461	0.2089	287.4	0.1042	7.63	1/888	1/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-A02:01	HLQFPSFPA	0.951	0.6352	1.3988	189.9	1.5921	7.63	2/888	2/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-A02:01	HLQFPSFPA	0.951	0.6352	1.3988	189.9	1.5921	7.63	2/888	2/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-C07:01	TRMEGGAPL	0.9825	0.8175	0.4277	279.7	0.1013	7.63	1/888	1/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-C07:01	LRQPPFGRL	0.9919	0.8769	0.5213	351	0.1255	7.63	1/888	1/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-C14:02	RQPPFGRLL	0.8422	0.9907	0.2727	199.6	0.6097	7.63	1/888	1/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-A02:01	LLFLHPHRL	0.9656	0.7506	0.0299	16.9	0.2164	7.63	2/888	2/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-A02:01	LLFLHPHRL	0.9656	0.7506	0.0299	16.9	0.2164	7.63	2/888	2/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-A02:01	FLHPHRLKA	0.9036	0.5474	0.3235	249.2	1.8963	7.63	2/888	2/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-A02:01	FLHPHRLKA	0.9036	0.5474	0.3235	249.2	1.8963	7.63	2/888	2/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-C14:02	KAPSLPRVM	0.5735	0.981	0.367	290.4	0.8407	7.63	1/888	1/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-C14:02	SYRPGLRMFL	0.9206	0.9355	0.184	73.4	0.2506	7.63	1/888	1/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-A02:01	FLRLGVPQVV	0.8865	0.525	0.8468	35.9	0.4735	7.63	2/888	2/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-A02:01	FLRLGVPQVV	0.8865	0.525	0.8468	35.9	0.4735	7.63	2/888	2/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-C14:02	QFPSFPAPSL	0.9706	0.9839	0.0465	408	1.1335	7.63	1/888	1/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-B51:01	FPSFPAPSLV	0.9917	0.8563	0.7638	83.4	0.0095	7.63	1/888	1/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-C07:01	LRQPPFGRLL	0.9932	0.8843	0.5982	461	0.1577	7.63	1/888	1/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-A02:01	RLLFLHPHRL	0.951	0.8028	1.4441	175.9	1.5197	7.63	2/888	2/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-A02:01	RLLFLHPHRL	0.951	0.8028	1.4441	175.9	1.5197	7.63	2/888	2/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-A02:01	RLKAPSLPRV	0.9435	0.753	0.2996	44.9	0.5747	7.63	2/888	2/7086
INDEL	Breast	NFATC4_P766Lfs*78	HLA-A02:01	RLKAPSLPRV	0.9435	0.753	0.2996	44.9	0.5747	7.63	2/888	2/7086
INDEL	Breast	DMD_I2745Lfs*19	HLA-B18:01	GELKLTQMF	0.9618	0.9182	0.0558	406.4	0.2519	10.87	1/888	1/7086
INDEL	Breast	ATG4A_E391Kfs*6	HLA-B18:01	EEFDLEKIL	0.9834	0.942	0.5365	250.2	0.1682	8.84	1/888	1/7086
INDEL	Breast	ATG4A_E391Kfs*6	HLA-B18:01	EEFDLEKILRF	0.9994	0.8178	0.0717	306.4	0.2005	8.84	1/888	1/7086
INDEL	Breast	LAMA5_S3367Hfs*175	HLA-B39:10	CPSEARQPL	0.9261	0.9284	0.6875	11.4	0.0099	36.05	1/888	1/7086
INDEL	Breast	LAMA5_S3367Hfs*175	HLA-B39:10	APRPEPPAL	0.7604	0.9598	0.0084	106	0.1793	36.05	1/888	1/7086
INDEL	Breast	LAMA5_S3367Hfs*175	HLA-B39:10	RPEPPALPA	0.6848	0.9494	0.8444	315.4	0.4963	36.05	1/888	1/7086
INDEL	Breast	LAMA5_S3367Hfs*175	HLA-C12:03	RAPPAPHPL	0.9899	0.9874	0.2868	104.6	0.467	36.05	1/888	1/7086
INDEL	Breast	LAMA5_S3367Hfs*175	HLA-B39:10	HTDGRGHTL	0.7221	0.6911	1.5295	259.6	0.4295	36.05	1/888	1/7086
INDEL	Breast	LAMA5_S3367Hfs*175	HLA-C12:03	HTDGRGHTL	0.5021	0.9724	0.4438	260.4	0.985	36.05	1/888	1/7086
INDEL	Breast	LAMA5_S3367Hfs*175	HLA-B39:10	LPAWPLAQGL	0.653	0.9908	0.9913	80.4	0.1448	36.05	1/888	1/7086
INDEL	Breast	LAMA5_S3367Hfs*175	HLA-B39:10	WPLAQGLRAL	0.9279	0.9789	1.1501	14.8	0.0168	36.05	1/888	1/7086
INDEL	Breast	CABIN1_I733Ffs*18	HLA-C12:03	FLRGQPSCF	0.9341	0.9947	0.6352	251.4	0.9643	9.47	1/888	1/7086
INDEL	Breast	CABIN1_I733Ffs*18	HLA-A23:01	SFLRGQPSCF	0.9139	0.629	0.704	355.8	0.8377	9.47	1/888	1/7086
INDEL	Breast	CABIN1_I733Ffs*18	HLA-A23:01	SFLRGQPSCFF	0.9673	0.6764	0.8468	455.5	0.98	9.47	1/888	1/7086
INDEL	Breast	SLC35E3_F120del	HLA-B35:01	VIIAIQTCY	0.9458	0.7955	0.296	329.9	0.6772	6.7	1/888	1/7086
INDEL	Breast	ZNF699_H349Pfs*3	HLA-C12:03	KAFSSSSPL	0.9842	0.9597	0.5181	17.3	0.0578	4.14	1/888	1/7086
INDEL	Breast	MUC1_A215Pfs*100	HLA-C16:01	FTFQTSSL	0.9907	0.9801	0.3124	179.2	0.5991	64.57	1/888	1/7086
INDEL	Breast	MUC1_A215Pfs*100	HLA-C16:01	TTTPPLPAI	0.7249	0.9922	0.3987	243.7	0.7903	64.57	1/888	1/7086
INDEL	Breast	MUC1_A215Pfs*100	HLA-C16:01	AIAPRLMPV	0.9873	0.9876	0.4967	85.5	0.2987	64.57	1/888	1/7086
INDEL	Breast	MUC1_A215Pfs*100	HLA-C16:01	RLMPVALTI	0.9296	0.99	0.0643	32.2	0.092	64.57	1/888	1/7086
INDEL	Breast	MUC1_A215Pfs*100	HLA-C16:01	VALTIARYL	0.9007	0.9791	0.0631	76.3	0.2668	64.57	1/888	1/7086
INDEL	Breast	MUC1_A215Pfs*100	HLA-C16:01	LSPPPITAL	0.9909	0.9728	0.1255	38.6	0.1148	64.57	1/888	1/7086
INDEL	Breast	MUC1_A215Pfs*100	HLA-C16:01	ITALLPSCL	0.8029	0.9859	0.7172	198.8	0.6586	64.57	1/888	1/7086
INDEL	Breast	MUC1_A215Pfs*100	HLA-C16:01	TALLPSCLL	0.7607	0.9907	0.7151	159.7	0.5426	64.57	1/888	1/7086
INDEL	Breast	MUC1_A215Pfs*100	HLA-C16:01	GSLSFSCLF	0.5359	0.9898	1.6023	290.1	0.9172	64.57	1/888	1/7086
INDEL	Breast	MUC1_A215Pfs*100	HLA-C16:01	LSFSCLFTF	0.7924	0.9894	0.6692	98.8	0.3443	64.57	1/888	1/7086
INDEL	Breast	MUC1_A215Pfs*100	HLA-C16:01	FTFQTSSLI	0.8403	0.9791	0.9595	74.2	0.2588	64.57	1/888	1/7086
INDEL	Breast	MUC1_A215Pfs*100	HLA-C16:01	FQTSSLIPL	0.9758	0.9792	1.6082	96.6	0.3372	64.57	1/888	1/7086
INDEL	Breast	MUC1_A215Pfs*100	HLA-C16:01	SARATTTPPL	0.9238	0.9681	1.2933	403.9	1.177	64.57	1/888	1/7086
INDEL	Breast	MUC1_A215Pfs*100	HLA-C16:01	IAPRLMPVAL	0.9936	0.9892	0.6929	463.4	1.3083	64.57	1/888	1/7086
INDEL	Breast	GATA3_M438Nfs*69	HLA-C12:03	SSNGHRHGL	0.8139	0.9338	0.6635	273	1.0167	180.97	1/888	1/7086
INDEL	Breast	MED23_P265Hfs*6	HLA-B08:01	DLFEHRLL	0.9953	0.6738	0.1596	315.9	0.522	5.39	1/888	1/7086
INDEL	Breast	ELMO2_Q76Hfs*13	HLA-B07:02	SPRPGLHA	0.9999	0.6496	0.4808	229.5	0.5161	19.16	1/888	1/7086
INDEL	Breast	ELMO2_Q76Hfs*13	HLA-B07:02	SPRPGLHAS	0.9981	0.5883	0.2793	23.4	0.0837	19.16	1/888	1/7086
INDEL	Breast	CFAP43_C77Vfs*11	HLA-C15:09	MATNIPVKL	0.9998	0.8009	0.0523	70.4	0.096	1.3	1/888	1/7086
INDEL	Breast	THPO_R119Lfs*32	HLA-A02:01	FLHRAGPQL	0.9767	0.7877	0.2151	34.6	0.4587	1.57	1/888	1/7086
INDEL	Breast	THPO_R119Lfs*32	HLA-C02:02	FLHRAGPQL	0.6853	0.9847	0.6273	255	0.1447	1.57	1/888	1/7086
INDEL	Breast	FASN_P753_E754del	HLA-A02:01	ALWHVHAV	0.9943	0.7511	0.8043	105.6	1.0937	651.51	1/888	1/7086
INDEL	Breast	FASN_P753_E754del	HLA-A02:01	ALWHVHAVV	0.9926	0.7466	0.0187	26.2	0.358	651.51	1/888	1/7086
INDEL	Breast	FASN_P753_E754del	HLA-A32:01	ALWHVHAVV	0.68	0.9936	1.0168	477.9	0.7324	651.51	1/888	1/7086
INDEL	Breast	FASN_P753_E754del	HLA-A32:01	HVHAVVLEI	0.982	0.9661	0.2868	138.6	0.2465	651.51	1/888	1/7086
INDEL	Breast	FASN_P753_E754del	HLA-C02:02	HVHAVVLEI	0.8631	0.9876	0.1072	340.6	0.2114	651.51	1/888	1/7086
INDEL	Breast	FASN_P753_E754del	HLA-B40:02	QEALWHVHAV	0.9969	0.5041	0.5231	70.3	0.2876	651.51	1/888	1/7086
INDEL	Breast	FASN_P753_E754del	HLA-A02:01	ALWHVHAVVL	0.9775	0.6689	0.5795	140.5	1.3185	651.51	1/888	1/7086
INDEL	Breast	HSPD1_P13Tfs*53	HLA-A02:01	KIWCRCPSL	0.9569	0.6507	0.645	106.9	1.1017	128.19	1/888	1/7086
INDEL	Breast	ZHX1-C8orf76_D179Efs*7	HLA-A24:02	SFFPHSGKESF	0.9996	0.6082	0.0671	455.1	0.62	1.45	1/888	1/7086
INDEL	Breast	CDH1_T679Dfs*9	HLA-A68:01	QVDHLRGQR	0.9638	0.5289	0.6137	378.7	1.9548	24.16	1/888	1/7086
INDEL	Breast	CHD8_L1411Wfs*59	HLA-A02:01	RMMSGHAPA	0.9593	0.5448	0.3593	25.1	0.3444	72.66	1/888	1/7086
INDEL	Breast	CHD8_L1411Wfs*59	HLA-C05:01	YLMDASSDV	0.934	0.93	1.9055	481.2	0.1865	72.66	1/888	1/7086
INDEL	Breast	CHD8_L1411Wfs*59	HLA-A23:01	IMPMGALTAF	0.9939	0.6114	0.9574	109.1	0.3649	72.66	1/888	1/7086
INDEL	Breast	CNTD1_K103Efs*56	HLA-B50:01	SELEGSETAA	0.8661	0.8065	0.3137	90.2	0.0654	2.39	1/888	1/7086
INDEL	Breast	HOXB9_E139Kfs*62	HLA-C07:02	RRAGRPCCL	0.7712	0.9627	0.6616	238.8	0.157	1.42	1/888	1/7086
INDEL	Breast	HOXB9_E139Kfs*62	HLA-A03:01	RAGRPCCLIK	0.9738	0.5773	1.5343	317.1	0.8864	1.42	1/888	1/7086
INDEL	Breast	FST_E309Gfs*22	HLA-A31:01	VLLGSKALR	0.9735	0.6266	0.1807	46.3	0.3826	139.83	1/888	1/7086
INDEL	Breast	FST_E309Gfs*22	HLA-A31:01	RILQLHFGR	0.9945	0.716	0.0919	5.7	0.0145	139.83	1/888	1/7086
INDEL	Breast	FST_E309Gfs*22	HLA-A31:01	LQLHFGRHR	0.969	0.5423	0.5657	95.3	0.7284	139.83	1/888	1/7086
INDEL	Breast	FST_E309Gfs*22	HLA-A31:01	GVLLGSKALR	0.9781	0.8113	0.5347	158.5	1.0337	139.83	1/888	1/7086
INDEL	Breast	FST_E309Gfs*22	HLA-A31:01	ILQLHFGRHR	0.9535	0.6005	1.063	111.5	0.8194	139.83	1/888	1/7086
INDEL	Breast	FST_E309Gfs*22	HLA-A31:01	QLHFGRHRGR	0.925	0.5914	1.5887	160.1	1.04	139.83	1/888	1/7086
INDEL	Breast	FST_E309Gfs*22	HLA-A31:01	RILQLHFGRHR	0.9895	0.72	0.1465	28.7	0.2248	139.83	1/888	1/7086
INDEL	Breast	TP53_P191Sfs*18	HLA-C15:02	ASYPSGRKF	0.8505	0.8974	0.1369	426.2	0.4565	39.06	1/888	1/7086
INDEL	Breast	COASY_C144del	HLA-C03:04	YSCPRLASV	0.9957	0.9424	0.2138	358.6	0.8005	73.87	1/888	1/7086
INDEL	Breast	FN1_K2230Wfs*8	HLA-A32:01	RMSESGFWKW	0.9983	0.9819	0.0052	65.3	0.12	302.46	1/888	1/7086
INDEL	Breast	FN1_K2230Wfs*8	HLA-B40:01	SESGFWKWSF	0.9825	0.64	0.8317	414.4	0.6267	302.46	1/888	1/7086
INDEL	Breast	CSAD_R164Ifs*86	HLA-A32:01	NMYAVNLAI	0.8104	0.9464	0.6535	39.5	0.0713	9.21	1/888	1/7086
INDEL	Breast	CSAD_R164Ifs*86	HLA-B35:01	YAVNLAISA	0.949	0.8529	0.9993	298.8	0.6405	9.21	1/888	1/7086
INDEL	Breast	CSAD_R164Ifs*86	HLA-C03:04	YAVNLAISA	0.9954	0.9869	0.1963	82.1	0.318	9.21	1/888	1/7086
INDEL	Breast	CSAD_R164Ifs*86	HLA-B35:01	SAHCRPWPY	0.9707	0.7641	0.3268	45.1	0.1738	9.21	1/888	1/7086
INDEL	Breast	CSAD_R164Ifs*86	HLA-C03:04	VTTPSRREL	0.9899	0.9822	0.3057	432.2	0.9026	9.21	1/888	1/7086
INDEL	Breast	CSAD_R164Ifs*86	HLA-A32:01	RFWDLAPTV	0.919	0.9953	0.9203	241.1	0.4125	9.21	1/888	1/7086
INDEL	Breast	CSAD_R164Ifs*86	HLA-A32:01	RIWRGRLVW	0.9957	0.9611	0.0062	7.5	0.0099	9.21	1/888	1/7086
INDEL	Breast	CSAD_R164Ifs*86	HLA-A32:01	RLVWPRLRV	0.8181	0.9801	0.719	480.5	0.7356	9.21	1/888	1/7086
INDEL	Breast	CSAD_R164Ifs*86	HLA-C03:04	LVWPRLRVL	0.9984	0.9805	0.367	156.9	0.4813	9.21	1/888	1/7086
INDEL	Breast	CSAD_R164Ifs*86	HLA-A32:01	RLRVLCRSW	0.9789	0.9881	0.3736	127.5	0.2226	9.21	1/888	1/7086
INDEL	Breast	CSAD_R164Ifs*86	HLA-A32:01	RVLCRSWSV	0.9669	0.9831	0.6352	13.9	0.0216	9.21	1/888	1/7086
INDEL	Breast	CSAD_R164Ifs*86	HLA-C03:04	WSVPPLAPL	0.9997	0.9913	0.3806	5.2	0.0192	9.21	1/888	1/7086
INDEL	Breast	CSAD_R164Ifs*86	HLA-A32:01	RLVWPRLRVL	0.9325	0.9727	1.8326	345.3	0.5582	9.21	1/888	1/7086
INDEL	Breast	LSR_P353Lfs*75	HLA-C16:01	RSWPTSTL	0.9961	0.9881	0.1369	150.5	0.5132	50.35	1/888	1/7086
INDEL	Breast	LSR_P353Lfs*75	HLA-A68:02	ETLTGVAQL	0.9943	0.6719	0.0919	37.3	0.3302	50.35	1/888	1/7086
INDEL	Breast	LSR_P353Lfs*75	HLA-A02:01	TLTGVAQLV	0.9848	0.5407	0.2138	148	1.3684	50.35	1/888	1/7086
INDEL	Breast	LSR_P353Lfs*75	HLA-A68:02	TLTGVAQLV	0.8578	0.7169	0.8169	322.5	1.5475	50.35	1/888	1/7086
INDEL	Breast	LSR_P353Lfs*75	HLA-B42:01	YPCFGTRTA	0.7403	0.6989	0.0919	171.6	0.6479	50.35	1/888	1/7086
INDEL	Breast	LSR_P353Lfs*75	HLA-A68:02	TAVWPLKSA	0.9116	0.6324	0.1704	281	1.4005	50.35	1/888	1/7086
INDEL	Breast	LSR_P353Lfs*75	HLA-C16:01	AVWPLKSAV	0.9311	0.9879	0.7986	383.2	1.1229	50.35	1/888	1/7086
INDEL	Breast	LSR_P353Lfs*75	HLA-B42:01	WPLKSAVAT	0.9356	0.7217	0.9595	222.7	0.7532	50.35	1/888	1/7086
INDEL	Breast	LSR_P353Lfs*75	HLA-C16:01	RSWPTSTLL	0.9858	0.9846	0.1886	17	0.035	50.35	1/888	1/7086
INDEL	Breast	LSR_P353Lfs*75	HLA-C17:01	RSWPTSTLL	0.7729	0.9788	0.1435	135.6	0.0295	50.35	1/888	1/7086
INDEL	Breast	LSR_P353Lfs*75	HLA-A02:01	TLLDLAPPV	0.997	0.7251	0.1354	3.6	0.0136	50.35	1/888	1/7086
INDEL	Breast	LSR_P353Lfs*75	HLA-A68:02	ETLTGVAQLV	0.9941	0.801	0.2122	18.4	0.148	50.35	1/888	1/7086
INDEL	Breast	LSR_P353Lfs*75	HLA-B42:01	YPCFGTRTAV	0.9624	0.652	0.3639	17.9	0.077	50.35	1/888	1/7086
INDEL	Breast	LSR_P353Lfs*75	HLA-A68:02	TAVWPLKSAV	0.9502	0.6475	1.6818	20.2	0.1702	50.35	1/888	1/7086
INDEL	Breast	LSR_P353Lfs*75	HLA-A68:02	STLLDLAPPV	0.9732	0.9407	1.224	72.6	0.5732	50.35	1/888	1/7086
INDEL	Breast	LSR_P353Lfs*75	HLA-A02:01	TLLDLAPPVA	0.9927	0.7269	0.2699	71	0.8361	50.35	1/888	1/7086
INDEL	Breast	LSR_P353Lfs*75	HLA-A02:01	LLDLAPPVAV	0.9961	0.8473	0.2102	59.1	0.7227	50.35	1/888	1/7086
INDEL	Breast	LSR_P353Lfs*75	HLA-B42:01	IPMGPAYNGYL	0.8892	0.7597	0.4134	73	0.3452	50.35	1/888	1/7086
INDEL	Breast	LSR_P353Lfs*75	HLA-B42:01	WPLKSAVATGF	0.9631	0.845	0.8186	369.1	1.0195	50.35	1/888	1/7086
INDEL	Breast	LSR_P353Lfs*75	HLA-A02:01	TLLDLAPPVAV	0.9992	0.8453	0.1072	24.2	0.3314	50.35	1/888	1/7086
INDEL	Breast	KMT2C_Y3699Mfs*6	HLA-C16:01	QATPNQQTM	0.7268	0.9915	0.4698	272.5	0.8714	13.28	1/888	1/7086
INDEL	Breast	KMT2C_Y3699Mfs*6	HLA-B15:01	SQATPNQQTM	0.9994	0.9278	0.4246	143.5	0.7105	13.28	1/888	1/7086
INDEL	Breast	GATA3_N351Qfs*19	HLA-B15:01	KLHNIQTPDY	0.9997	0.8168	0.251	41	0.1994	1147.36	1/888	1/7086
INDEL	Breast	CTCF_R28Pfs*17	HLA-B15:01	YQRPGRRCL	0.9456	0.686	0.2464	485.3	1.664	113.47	1/888	1/7086
INDEL	Breast	POP7_A50Pfs*16	HLA-A31:01	KAQLPEAAGR	0.9181	0.9663	0.9152	108.4	0.8024	104.99	1/888	1/7086
INDEL	Breast	CYB561_Q21Lfs*54	HLA-B35:01	LPYYVAFSL	0.9848	0.8453	0.3235	9.5	0.034	96.47	1/888	1/7086
INDEL	Breast	CYB561_Q21Lfs*54	HLA-A31:01	GGHDRRVAR	0.8436	0.5585	0.9942	102.1	0.7682	96.47	1/888	1/7086
INDEL	Breast	CYB561_Q21Lfs*54	HLA-A31:01	RVARAVPRR	0.9957	0.6532	0.3332	20.4	0.1464	96.47	1/888	1/7086
INDEL	Breast	CYB561_Q21Lfs*54	HLA-C03:04	RAVPRRHCL	0.9714	0.9911	0.5886	273.1	0.6838	96.47	1/888	1/7086
INDEL	Breast	CYB561_Q21Lfs*54	HLA-A31:01	RAPPLHGHR	0.9847	0.5768	0.5094	92.8	0.7132	96.47	1/888	1/7086
INDEL	Breast	CYB561_Q21Lfs*54	HLA-A31:01	AGLPCLQER	0.8981	0.863	0.6058	310.8	1.5981	96.47	1/888	1/7086
INDEL	Breast	CECR2_S259Ffs*18	HLA-A31:01	FSREDLPSR	0.9047	0.57	0.2913	298.5	1.5587	1.32	1/888	1/7086
INDEL	Breast	CECR2_S259Ffs*18	HLA-A31:01	EWRQVTEFSR	0.7986	0.517	1.0601	461	1.9865	1.32	1/888	1/7086
INDEL	Breast	SLC25A43_N193Rfs*11	HLA-C03:04	RSVLSPTEL	0.9944	0.9948	0.4916	62.9	0.2568	26.42	1/888	1/7086
INDEL	Breast	F8_R857Sfs*18	HLA-C03:04	MTHFSSITV	0.9548	0.9835	0.3769	74.6	0.2959	3.51	1/888	1/7086
INDEL	Breast	MAP1A_G30Sfs*76	HLA-A24:02	VFGSWYGTW	0.9937	0.7859	0.3698	67.2	0.1479	1.51	1/888	1/7086
INDEL	Breast	MAP1A_G30Sfs*76	HLA-A24:02	SWYGTWTAL	0.9575	0.7771	0.6572	256.1	0.4331	1.51	1/888	1/7086
INDEL	Breast	COL18A1_G1051Lfs*84	HLA-B27:05	GRREKLEQM	0.9974	0.6891	0.6079	498	1.242	24	1/888	1/7086
INDEL	Breast	FAM127C_E55_D61del	HLA-C08:02	FVDALKVTF	0.9996	0.9862	0.0671	137.4	0.0142	14.94	1/888	1/7086
INDEL	Breast	CHI3L1_L76Afs*58	HLA-B58:02	VSTAISAHPW	0.9995	0.8833	0.3542	407.7	0.0239	32.98	1/888	1/7086
INDEL	Breast	TP53_A86Cfs*63	HLA-C07:01	LRFPSGLLA	0.8741	0.8249	0.1566	439.2	0.1501	12.86	1/888	1/7086
INDEL	Breast	TP53_A86Cfs*63	HLA-C07:01	LRFPSGLLAF	0.9993	0.8199	0.0427	197.6	0.0751	12.86	1/888	1/7086
INDEL	Breast	TP53_A86Cfs*63	HLA-C06:02	LRFPSGLLAF	0.9737	0.9976	0.1302	179.8	0.0661	12.86	1/888	1/7086
INDEL	Breast	BRD1_H530Tfs*9	HLA-B08:01	RLRTTWSAL	0.9483	0.8479	0.8043	137.6	0.2466	14.02	1/888	1/7086
INDEL	Breast	SENP6_F1049Lfs*5	HLA-C07:02	FFENPILSL	0.9691	0.9498	0.0979	195.1	0.1258	15.19	1/888	1/7086
INDEL	Breast	SENP6_F1049Lfs*5	HLA-C07:02	SFFENPILSL	0.9463	0.967	0.0745	369.7	0.2442	15.19	1/888	1/7086
INDEL	Breast	MTHFD1L_V376Cfs*21	HLA-C05:01	AVDCLQMKL	0.9999	0.9378	0.2335	167	0.0826	3.35	1/888	1/7086
INDEL	Breast	MTHFD1L_V376Cfs*21	HLA-A30:01	QMKLKSMAK	0.9919	0.6738	0.4475	69.9	0.3568	3.35	1/888	1/7086
INDEL	Breast	MTHFD1L_V376Cfs*21	HLA-A30:01	KLKSMAKAK	0.9941	0.8111	0.3753	24.3	0.102	3.35	1/888	1/7086
INDEL	Breast	MTHFD1L_V376Cfs*21	HLA-A30:01	KSMAKAKPK	0.9986	0.6303	0.2557	10.5	0.0283	3.35	1/888	1/7086
INDEL	Breast	MTHFD1L_V376Cfs*21	HLA-A30:01	MAKAKPKYV	0.9721	0.8607	1.5252	203.7	0.9723	3.35	1/888	1/7086
INDEL	Breast	MTHFD1L_V376Cfs*21	HLA-A30:01	KAKPKYVCP	0.9783	0.8483	1.3344	270.7	1.2362	3.35	1/888	1/7086
INDEL	Breast	MTHFD1L_V376Cfs*21	HLA-A30:01	KSMAKAKPKY	0.9404	0.6195	1.6327	369	1.5933	3.35	1/888	1/7086
INDEL	Breast	MTHFD1L_V376Cfs*21	HLA-A30:01	KLKSMAKAKPK	0.9982	0.7584	1.5935	330.9	1.4631	3.35	1/888	1/7086
INDEL	Breast	SRCAP_H511Qfs*67	HLA-A30:01	RAKQMKRRK	0.9913	0.8195	0.6352	33.5	0.173	7.21	1/888	1/7086
INDEL	Breast	SRCAP_H511Qfs*67	HLA-A32:01	MILGWSTCL	0.6843	0.9838	1.3381	173.6	0.309	7.21	1/888	1/7086
INDEL	Breast	SRCAP_H511Qfs*67	HLA-A30:01	KSRVRQMQA	0.9897	0.7745	0.645	4.4	0.0083	7.21	1/888	1/7086
INDEL	Breast	SRCAP_H511Qfs*67	HLA-A30:01	RVRQMQAVG	0.9711	0.8521	1.6471	41.4	0.2166	7.21	1/888	1/7086
INDEL	Breast	SRCAP_H511Qfs*67	HLA-A32:01	RQMQAVGLL	0.8486	0.9534	0.68	64.7	0.119	7.21	1/888	1/7086
INDEL	Breast	SRCAP_H511Qfs*67	HLA-A32:01	QMQAVGLLL	0.6881	0.9671	0.9971	256.7	0.4366	7.21	1/888	1/7086
INDEL	Breast	SRCAP_H511Qfs*67	HLA-A30:01	VQHQRNLSLK	0.9796	0.6177	1.9055	245.8	1.1407	7.21	1/888	1/7086
INDEL	Breast	SRCAP_H511Qfs*67	HLA-A30:01	SLRMPNHRAK	0.9922	0.8449	1.7372	57.8	0.2969	7.21	1/888	1/7086
INDEL	Breast	SRCAP_H511Qfs*67	HLA-A30:01	RVRQMQAVGL	0.9871	0.8023	1.0266	43.3	0.2269	7.21	1/888	1/7086
INDEL	Breast	SRCAP_H511Qfs*67	HLA-A32:01	RQMQAVGLLL	0.9682	0.9598	0.3367	83.3	0.1531	7.21	1/888	1/7086
INDEL	Breast	SRCAP_H511Qfs*67	HLA-B13:02	RQMQAVGLLL	0.8605	0.7737	0.1418	351.1	0.0416	7.21	1/888	1/7086
INDEL	Breast	SCML1_D271Sfs*15	HLA-A30:01	IMPSCRPLQK	0.976	0.7036	1.1792	406.9	1.7341	2.71	1/888	1/7086
INDEL	Breast	GATA3_P408Qfs*97	HLA-A02:01	SLSHISQPL	0.99	0.6918	0.1212	42.6	0.5495	946.27	1/888	1/7086
INDEL	Breast	GATA3_P408Qfs*97	HLA-C03:02	HAHADAPAI	0.9809	0.9896	0.6018	55.4	0.2695	946.27	1/888	1/7086
INDEL	Breast	GATA3_P408Qfs*97	HLA-B53:01	APAIQPVLW	0.9721	0.8776	0.0481	63.4	0.0831	946.27	2/888	2/7086
INDEL	Breast	GATA3_P408Qfs*97	HLA-B53:01	APAIQPVLW	0.9721	0.8776	0.0481	63.4	0.0831	946.27	2/888	2/7086
INDEL	Breast	GATA3_P408Qfs*97	HLA-A02:01	AIQPVLWTT	0.7836	0.8093	1.192	249.4	1.8972	946.27	1/888	1/7086
INDEL	Breast	GATA3_P408Qfs*97	HLA-B53:01	DAPAIQPVLW	0.9548	0.7762	0.3736	141.4	0.1649	946.27	2/888	2/7086
INDEL	Breast	GATA3_P408Qfs*97	HLA-B53:01	DAPAIQPVLW	0.9548	0.7762	0.3736	141.4	0.1649	946.27	2/888	2/7086
INDEL	Breast	CREBZF_S234Efs*70	HLA-A68:01	ESLPTGSLSQR	0.9991	0.6257	0.0017	153.6	1.1742	45.48	1/888	1/7086
INDEL	Breast	LYPLAL1_L27Cfs*11	HLA-A68:02	HSASLIFCM	0.9539	0.6397	0.651	144.3	0.9115	29.03	1/888	1/7086
INDEL	Breast	LYPLAL1_L27Cfs*11	HLA-C03:03	HSASLIFCM	0.9684	0.984	1.5029	479.3	0.9822	29.03	1/888	1/7086
INDEL	Breast	LYPLAL1_L27Cfs*11	HLA-A68:02	SLIFCMAQV	0.9503	0.8617	0.9226	129.3	0.8574	29.03	1/888	1/7086
INDEL	Breast	LYPLAL1_L27Cfs*11	HLA-A68:02	HSASLIFCMA	0.986	0.5245	0.7438	61.7	0.5017	29.03	1/888	1/7086
INDEL	Breast	TMEM87B_E288Afs*39	HLA-B15:01	GLWHCEASF	0.99	0.9491	0.5534	300.6	1.2379	22.54	1/888	1/7086
INDEL	Breast	UHRF2_F766Sfs*16	HLA-B58:01	KAQVSPALL	0.9594	0.8321	1.6984	368.3	1.1771	8.17	1/888	1/7086
INDEL	Breast	UHRF2_F766Sfs*16	HLA-A02:01	LLAGMILARI	0.9894	0.7137	0.5619	59.8	0.7303	8.17	1/888	1/7086
INDEL	Breast	RXRA_F439Lfs*10	HLA-A74:01	HLFFLQAHR	0.9769	0.7163	0.3199	89	0.0302	42.46	1/888	1/7086
INDEL	Breast	CDH1_G775Afs*8	HLA-B58:01	LSQLHRAW	0.9972	0.9891	0.5347	497.3	1.424	11.96	1/888	1/7086
INDEL	Breast	CDH1_G775Afs*8	HLA-A02:01	SQLHRAWTL	0.822	0.8033	0.0948	56.2	0.6926	11.96	1/888	1/7086
INDEL	Breast	C6orf136_Y172Ffs*9	HLA-B15:01	LQSHDYSLF	0.9969	0.8792	0.5181	16.8	0.0541	23.55	1/888	1/7086
INDEL	Breast	C6orf136_Y172Ffs*9	HLA-C03:03	QSHDYSLFL	0.9972	0.9859	0.1448	224.9	0.6063	23.55	1/888	1/7086
INDEL	Breast	C6orf136_Y172Ffs*9	HLA-B15:01	FLQSHDYSLF	0.9994	0.9222	0.8492	39.2	0.1916	23.55	1/888	1/7086
INDEL	Breast	C6orf136_Y172Ffs*9	HLA-A02:01	FLQSHDYSLFL	0.9883	0.7787	0.4491	12	0.1432	23.55	1/888	1/7086
INDEL	Breast	MAP2K4_H79Tfs*9	HLA-B15:01	RLRTTALSH	0.9781	0.8929	1.5614	459	1.6042	4.89	1/888	1/7086
INDEL	Breast	ZNF653_V345Afs*14	HLA-C03:03	MAAGSGAPA	0.9874	0.9897	0.6818	55.6	0.2316	12.18	1/888	1/7086
INDEL	Breast	ZNF653_V345Afs*14	HLA-C03:03	AAGSGAPAV	0.8258	0.9894	0.538	428.5	0.8972	12.18	1/888	1/7086
INDEL	Breast	ZNF653_V345Afs*14	HLA-C03:03	MAAGSGAPAV	0.9707	0.9886	0.5999	146.7	0.4625	12.18	1/888	1/7086
INDEL	Breast	GATA3_S436Lfs*71	HLA-C03:04	LSFGPHHPL	0.9997	0.9913	0.1734	5.9	0.022	1407.06	1/888	1/7086
INDEL	Breast	GATA3_S436Lfs*71	HLA-C12:03	LSFGPHHPL	0.9976	0.9925	0.2382	17.7	0.0592	1407.06	1/888	1/7086
INDEL	Breast	GATA3_S436Lfs*71	HLA-A02:01	SLSFGPHHPL	0.8683	0.6349	1.0314	177.1	1.526	1407.06	1/888	1/7086
INDEL	Breast	LZTR1_K789Gfs*66	HLA-C12:03	MGTGHEAAL	0.9579	0.9865	0.793	427	1.3958	18.45	1/888	1/7086
INDEL	Breast	LZTR1_K789Gfs*66	HLA-B35:01	LPAHHCAPV	0.9406	0.9462	1.418	171.3	0.447	18.45	1/888	1/7086
INDEL	Breast	LZTR1_K789Gfs*66	HLA-A02:01	GLQVAHPAV	0.9771	0.7247	0.4397	116.4	1.1663	18.45	1/888	1/7086
INDEL	Breast	LZTR1_K789Gfs*66	HLA-B35:01	HPAVAEPAA	0.9342	0.6468	0.2825	123.8	0.3652	18.45	1/888	1/7086
INDEL	Breast	LZTR1_K789Gfs*66	HLA-C12:03	AAAAGHHRL	0.9177	0.9858	0.4548	234.6	0.9234	18.45	1/888	1/7086
INDEL	Breast	LZTR1_K789Gfs*66	HLA-A02:01	ALPAHHCAPV	0.789	0.7358	0.9687	81.2	0.9179	18.45	1/888	1/7086
INDEL	Breast	RPL12_M116Ifs*11	HLA-B27:05	ARQILSQRTL	0.9998	0.6772	0.6594	192.3	0.5969	537.26	1/888	1/7086
INDEL	Breast	NFKBIZ_Q261Afs*63	HLA-B44:03	SEMPTIPSQGL	0.9992	0.9612	0.0697	278.1	0.2828	29.06	2/888	2/7086
INDEL	Breast	NFKBIZ_Q261Afs*63	HLA-B44:03	SEMPTIPSQGL	0.9992	0.9612	0.0697	278.1	0.2828	29.06	2/888	2/7086
INDEL	Breast	GATA3_D335Gfs*17	HLA-A02:01	CLQCLWALL	0.9472	0.8898	1.9543	270.8	1.9932	581.5	3/888	3/7086
INDEL	Breast	ZNF418_C649Afs*38	HLA-B44:03	VENHFIEAL	0.9767	0.9774	0.0848	291.8	0.2942	2.62	2/888	2/7086
INDEL	Breast	ZNF418_C649Afs*38	HLA-B44:03	VENHFIEAL	0.9767	0.9774	0.0848	291.8	0.2942	2.62	2/888	2/7086
INDEL	Breast	ZNF418_C649Afs*38	HLA-B44:03	YEAVNVENHF	0.9934	0.9263	0.1527	335.2	0.3284	2.62	2/888	2/7086
INDEL	Breast	ZNF418_C649Afs*38	HLA-B44:03	YEAVNVENHF	0.9934	0.9263	0.1527	335.2	0.3284	2.62	2/888	2/7086
INDEL	Breast	SEC22A_W277Cfs*7	HLA-C07:01	LRNLCSFSF	0.9979	0.696	0.5637	334.2	0.1203	9.8	1/888	2/7086
INDEL	Breast	LRP1_T3719Rfs*64	HLA-C12:02	CSMTAGTAL	0.9654	0.9534	0.4646	107.9	0.1317	46.14	1/888	1/7086
INDEL	Breast	CRYBG3_S2864Cfs*7	HLA-C12:03	RATCVHFSL	0.9161	0.9828	0.3956	119	0.524	1.7	1/888	1/7086
INDEL	Breast	KDM7A_K305Sfs*17	HLA-C07:02	IFYLISQQM	0.5116	0.8868	0.4916	287.1	0.1889	22.03	1/888	1/7086
INDEL	Breast	KDM7A_K305Sfs*17	HLA-B15:01	QQMKIWHVM	0.9983	0.9494	0.4769	28.5	0.1317	22.03	1/888	1/7086
INDEL	Breast	KDM7A_K305Sfs*17	HLA-C07:02	MKIWHVMNL	0.9	0.9725	0.3398	208.2	0.1357	22.03	1/888	1/7086
INDEL	Breast	KDM7A_K305Sfs*17	HLA-C03:03	HVMNLGVHL	0.999	0.9886	0.184	58.4	0.2411	22.03	1/888	1/7086
INDEL	Breast	KDM7A_K305Sfs*17	HLA-A02:01	KIWHVMNLGV	0.9806	0.7637	0.766	47.6	0.6033	22.03	1/888	1/7086
INDEL	Breast	STAT6_K383Lfs*43	HLA-B15:01	RQQCQSHY	0.9993	0.7995	1.1086	335.1	1.3352	94.35	1/888	1/7086
INDEL	Breast	STAT6_K383Lfs*43	HLA-B07:02	WPRQTPHPA	0.999	0.7429	0.5365	13.3	0.0393	94.35	1/888	1/7086
INDEL	Breast	STAT6_K383Lfs*43	HLA-B07:02	TPHPAPGPV	0.999	0.7117	0.4277	40.5	0.1423	94.35	1/888	1/7086
INDEL	Breast	STAT6_K383Lfs*43	HLA-B07:02	HPAPGPVSA	0.9992	0.679	0.0267	110.2	0.3186	94.35	1/888	1/7086
INDEL	Breast	STAT6_K383Lfs*43	HLA-B07:02	RPWQPRQQC	0.9851	0.5775	0.458	62.2	0.2031	94.35	1/888	1/7086
INDEL	Breast	STAT6_K383Lfs*43	HLA-C07:02	SHYPVGQCL	0.5921	0.9412	0.0166	275.9	0.1811	94.35	1/888	1/7086
INDEL	Breast	STAT6_K383Lfs*43	HLA-B07:02	WPRQTPHPAP	0.9891	0.7981	1.4566	419.5	0.7528	94.35	1/888	1/7086
INDEL	Breast	ARHGAP35_S1453Lfs*346	HLA-C01:02	WLPPSPSSL	0.9197	0.9638	0.1383	492.5	0.0131	8.32	1/888	1/7086
INDEL	Breast	ARHGAP35_S1453Lfs*346	HLA-B15:01	CSHCFPPSF	0.9389	0.9779	1.202	424	1.5371	8.32	1/888	1/7086
INDEL	Breast	ARID1B_Y2099Mfs*4	HLA-C12:03	FSRQEKFML	0.9815	0.9639	0.9275	195.5	0.809	21.91	1/888	1/7086
INDEL	Breast	TRIM35_E438Sfs*159	HLA-A02:01	FAPTSTWGV	0.9204	0.8319	0.3822	56.1	0.6913	9.2	1/888	1/7086
INDEL	Breast	GATA3_R330Efs*23	HLA-A02:01	CLQCLWALL	0.9472	0.8898	1.9543	270.8	1.9932	887.28	1/888	1/7086
INDEL	Breast	GATA3_R330Efs*23	HLA-A24:02	QWGPCLQCLW	0.9924	0.7078	1.12	365.8	0.5448	887.28	1/888	1/7086
INDEL	Breast	SPOP_N196Rfs*38	HLA-A02:01	GLWERVRRTV	0.9609	0.6986	1.3729	206	1.6776	14.74	1/888	1/7086
INDEL	Breast	ASF1A_L140Wfs*54	HLA-A02:01	KLQRNIWHL	0.9903	0.6793	0.2183	9.2	0.1065	26.57	1/888	1/7086
INDEL	Breast	ASF1A_L140Wfs*54	HLA-C07:02	IYSHFFQQM	0.8191	0.9295	0.0441	92	0.0503	26.57	1/888	1/7086
INDEL	Breast	ASF1A_L140Wfs*54	HLA-C07:02	HFFQQMHYL	0.5618	0.9442	0.3217	33.5	0.0127	26.57	1/888	1/7086
INDEL	Breast	NF1_A542Efs*21	HLA-B35:01	MPEIELESVL	0.992	0.8698	1.6818	39.3	0.1525	9.05	1/888	1/7086
INDEL	Breast	BRCA2_V2151Ffs*17	HLA-B18:01	SENNHSIKF	0.9955	0.846	0.0344	129.8	0.089	1.15	1/888	1/7086
INDEL	Breast	WIPI1_H357Tfs*29	HLA-A02:01	VLIKTTACL	0.9296	0.6774	0.267	155.5	1.4141	37.39	1/888	1/7086
INDEL	Breast	WIPI1_H357Tfs*29	HLA-A02:01	KMTSDLPYL	0.9898	0.5325	0.0697	8.7	0.0981	37.39	1/888	1/7086
INDEL	Breast	WIPI1_H357Tfs*29	HLA-B27:05	KRIKKMTSDL	0.9997	0.8607	0.8884	78.4	0.261	37.39	1/888	1/7086
INDEL	Breast	WIPI1_H357Tfs*29	HLA-C12:03	MTSDLPYLSL	0.997	0.965	0.6911	327.7	1.1593	37.39	1/888	1/7086
INDEL	Breast	WIPI1_H357Tfs*29	HLA-C02:02	MTSDLPYLSL	0.9829	0.9663	0.5999	283.5	0.1635	37.39	1/888	1/7086
INDEL	Breast	RUNX1_S257Dfs*22	HLA-B39:01	DQDPLPLLL	0.934	0.9882	0.2526	181	0.1928	54.19	1/888	1/7086
INDEL	Breast	RUNX1_S257Dfs*22	HLA-C12:03	WSYDQDPLPL	0.9953	0.9714	1.0116	148.6	0.642	54.19	1/888	1/7086
INDEL	Breast	PPARGC1A_E227_N228insALGFIFVPLLFCLIL	HLA-A02:01	ALGFIFVPL	0.9645	0.6964	0.3386	48.7	0.6155	3.41	1/888	1/7086
INDEL	Breast	PPARGC1A_E227_N228insALGFIFVPLLFCLIL	HLA-A31:01	LLFCLILNR	0.966	0.775	0.538	101.6	0.7652	3.41	1/888	1/7086
INDEL	Breast	PPARGC1A_E227_N228insALGFIFVPLLFCLIL	HLA-A02:01	ALGFIFVPLL	0.9679	0.5651	1.3629	94.5	1.0216	3.41	1/888	1/7086
INDEL	Breast	MAP3K1_D630Rfs*16	HLA-A02:01	MLQRSVNGL	0.9489	0.7098	0.8859	174.7	1.5133	24	1/888	1/7086
INDEL	Breast	MAP3K1_D630Rfs*16	HLA-B27:05	GRCGGGMLQR	0.9996	0.5641	0.4659	245.4	0.7346	24	1/888	1/7086
INDEL	Breast	GATA3_G431Wfs*76	HLA-C12:03	LSFWTTPPL	0.9905	0.9915	0.7329	17.2	0.0572	415.68	1/888	1/7086
INDEL	Breast	GATA3_G431Wfs*76	HLA-A02:01	SLSFWTTPPL	0.9522	0.6668	0.6392	43.7	0.5624	415.68	1/888	1/7086
INDEL	Breast	PRKAR1A_S5Rfs*122	HLA-C12:03	AAFENVSST	0.8521	0.9805	0.7329	258.6	0.9809	58.65	1/888	1/7086
INDEL	Breast	PRKAR1A_S5Rfs*122	HLA-C12:03	SSTSRSITF	0.8851	0.9826	0.3268	98.2	0.4424	58.65	1/888	1/7086
INDEL	Breast	PRKAR1A_S5Rfs*122	HLA-A02:01	ILLCSCALL	0.962	0.5128	0.5491	28	0.3792	58.65	1/888	1/7086
INDEL	Breast	PRKAR1A_S5Rfs*122	HLA-A02:01	LLLHPTQWL	0.9735	0.7206	0.3332	65.5	0.7869	58.65	1/888	1/7086
INDEL	Breast	PRKAR1A_S5Rfs*122	HLA-A02:01	LLCSCALLDL	0.9503	0.5686	1.0978	150.6	1.3854	58.65	1/888	1/7086
INDEL	Breast	PRKAR1A_S5Rfs*122	HLA-A02:01	FLLLHPTQWL	0.9782	0.6795	0.5312	34.4	0.4565	58.65	1/888	1/7086
INDEL	Breast	PRKAR1A_S5Rfs*122	HLA-A02:01	LLHPTQWLKV	0.9698	0.8064	1.1056	60.5	0.7378	58.65	1/888	1/7086
INDEL	Breast	PDE12_P178Lfs*67	HLA-B08:01	SVSPRHCL	0.9973	0.7264	1.0955	177.3	0.3135	13.37	2/888	2/7086
INDEL	Breast	PDE12_P178Lfs*67	HLA-B08:01	SVSPRHCL	0.9973	0.7264	1.0955	177.3	0.3135	13.37	2/888	2/7086
INDEL	Breast	CLCN6_F468Sfs*35	HLA-A02:01	FLFQVAFL	0.9943	0.7897	1.473	47.5	0.6021	7.74	1/888	1/7086
INDEL	Breast	CLCN6_F468Sfs*35	HLA-A02:01	TLALSSFSI	0.9579	0.5096	0.433	49.3	0.6224	7.74	1/888	1/7086
INDEL	Breast	CLCN6_F468Sfs*35	HLA-C12:03	LSSFSISCL	0.9654	0.9756	1.0576	303.1	1.0959	7.74	1/888	1/7086
INDEL	Breast	CLCN6_F468Sfs*35	HLA-B38:01	LHVGLTAFL	0.9955	0.9678	0.276	183.5	0.0256	7.74	1/888	1/7086
INDEL	Breast	CLCN6_F468Sfs*35	HLA-A02:01	GLTAFLFQV	0.9944	0.6851	0.0062	4.7	0.0271	7.74	1/888	1/7086
INDEL	Breast	CLCN6_F468Sfs*35	HLA-C12:03	TAFLFQVAF	0.7099	0.9941	0.1055	112	0.494	7.74	1/888	1/7086
INDEL	Breast	CLCN6_F468Sfs*35	HLA-C12:03	FQVAFLCLL	0.9408	0.99	1.8524	206.5	0.844	7.74	1/888	1/7086
INDEL	Breast	CLCN6_F468Sfs*35	HLA-A02:01	CLLCCVELL	0.9625	0.7134	0.6137	84	0.9419	7.74	1/888	1/7086
INDEL	Breast	CLCN6_F468Sfs*35	HLA-A02:01	LLCCVELLL	0.9841	0.677	0.5491	34.9	0.4623	7.74	1/888	1/7086
INDEL	Breast	CLCN6_F468Sfs*35	HLA-A02:01	ALSSFSISCL	0.9788	0.544	0.5583	85	0.9494	7.74	1/888	1/7086
INDEL	Breast	CLCN6_F468Sfs*35	HLA-C12:03	FSISCLHVGL	0.9987	0.952	1.7557	278	1.0305	7.74	1/888	1/7086
INDEL	Breast	CLCN6_F468Sfs*35	HLA-B38:01	LHVGLTAFLF	0.9939	0.9642	0.8108	182.5	0.0254	7.74	1/888	1/7086
INDEL	Breast	CLCN6_F468Sfs*35	HLA-A02:01	FLFQVAFLCL	0.9876	0.6043	0.5264	20.8	0.2843	7.74	1/888	1/7086
INDEL	Breast	CLCN6_F468Sfs*35	HLA-A02:01	FLCLLCCVEL	0.9831	0.6531	0.7456	85	0.95	7.74	1/888	1/7086
INDEL	Breast	CLCN6_F468Sfs*35	HLA-A02:01	CLLCCVELLL	0.9625	0.6487	1.2078	184.4	1.5645	7.74	1/888	1/7086
INDEL	Breast	TCP1_N477Tfs*7	HLA-B44:03	NEAQVTQNV	0.8538	0.907	0.2287	330.9	0.3252	49.99	1/888	1/7086
INDEL	Breast	GATA3_C320Lfs*32	HLA-C12:03	LSDHHNHTL	0.708	0.9751	0.2604	417.2	1.3757	3.83	1/888	1/7086
INDEL	Breast	GATA3_C320Lfs*32	HLA-A02:01	CLQCLWALL	0.9472	0.8898	1.9543	270.8	1.9932	3.83	1/888	1/7086
INDEL	Breast	KDM5B_S298Rfs*43	HLA-A02:01	MLWTCMSV	0.9788	0.5477	1.7317	52.7	0.6584	19.63	1/888	1/7086
INDEL	Breast	KDM5B_S298Rfs*43	HLA-A02:01	CMSVFYVAV	0.9827	0.5214	0.3302	110.4	1.1261	19.63	1/888	1/7086
INDEL	Breast	KDM5B_S298Rfs*43	HLA-A02:01	AMMKTGYCCV	0.9443	0.5774	0.7151	52.6	0.6566	19.63	1/888	1/7086
INDEL	Breast	PCNX_A1719del	HLA-A02:01	KLEEWLNET	0.9692	0.8733	1.1952	206.2	1.6787	4.66	1/888	1/7086
INDEL	Breast	MXD3_R100Cfs*61	HLA-C03:04	AAAGGQSGL	0.9981	0.992	0.4753	132.9	0.4347	1.6	1/888	1/7086
INDEL	Breast	MXD3_R100Cfs*61	HLA-B15:01	GQSGLLRPL	0.9973	0.8783	0.6818	247.6	1.0722	1.6	1/888	1/7086
INDEL	Breast	USP5_P645Lfs*45	HLA-A02:01	SLWTPAAKL	0.972	0.7341	0.2071	134.8	1.2825	100.51	1/888	1/7086
INDEL	Breast	IQGAP1_K94Tfs*22	HLA-A02:01	RLASTLDTL	0.9803	0.6463	0.0201	85.6	0.955	150.27	1/888	1/7086
INDEL	Breast	IQGAP1_K94Tfs*22	HLA-B15:01	RLASTLDTL	0.9429	0.9117	0.3302	475.7	1.6425	150.27	1/888	1/7086
INDEL	Breast	IQGAP1_K94Tfs*22	HLA-C03:04	LASTLDTLI	0.9727	0.9865	1.1679	225.5	0.6074	150.27	1/888	1/7086
INDEL	Breast	MED19_F152Lfs*25	HLA-B56:01	LPPPHWPVA	0.9914	0.9565	0.0762	156.2	0.1171	18.39	1/888	1/7086
INDEL	Breast	HJURP_C663Wfs*66	HLA-A02:01	STWHEGPSV	0.7616	0.6949	0.5435	231.4	1.8011	18.15	1/888	1/7086
INDEL	Breast	HJURP_C663Wfs*66	HLA-A31:08	GQFPGCLRW	0.9875	0.8417	0.0315	149.6	0.4094	18.15	1/888	1/7086
INDEL	Breast	GATA3_P408Afs*99	HLA-C14:02	SSLSHISAL	0.8868	0.9687	0.555	105.7	0.3541	836.14	1/888	1/7086
INDEL	Breast	TM7SF2_D253Gfs*61	HLA-C12:03	TTMDITHGV	0.8963	0.9724	0.0794	76.9	0.3582	29.66	1/888	1/7086
INDEL	Breast	TM7SF2_D253Gfs*61	HLA-C02:02	TTMDITHGV	0.7122	0.974	0.0979	157.7	0.0769	29.66	1/888	1/7086
INDEL	Breast	TM7SF2_D253Gfs*61	HLA-A24:02	CYWLLHLPW	0.9855	0.7001	0.7533	221.7	0.39	29.66	1/888	1/7086
INDEL	Breast	SLC44A5_G445Efs*24	HLA-B35:03	LPSMYTTYL	0.9846	0.7128	0.4986	53.7	0.0095	1.58	2/888	2/7086
INDEL	Breast	SLC44A5_G445Efs*24	HLA-B35:03	LPSMYTTYL	0.9846	0.7128	0.4986	53.7	0.0095	1.58	2/888	2/7086
INDEL	Breast	SEZ6L2_L322Cfs*49	HLA-B35:03	HPVVAPSTM	0.9965	0.808	0.1196	99.3	0.018	1.9	2/888	2/7086
INDEL	Breast	SEZ6L2_L322Cfs*49	HLA-B35:03	HPVVAPSTM	0.9965	0.808	0.1196	99.3	0.018	1.9	2/888	2/7086
INDEL	Breast	IFI6_N110Ifs*16	HLA-A31:01	IYWCPDGLR	0.8847	0.8215	0.7808	93.6	0.718	9320.09	1/888	1/7086
INDEL	Breast	IFI6_N110Ifs*16	HLA-A31:01	GLRHPQVSR	0.9285	0.6511	0.1025	82.3	0.651	9320.09	1/888	1/7086
INDEL	Breast	IFI6_N110Ifs*16	HLA-A31:01	GIYWCPDGLR	0.9372	0.7726	1.5067	123.9	0.8821	9320.09	1/888	1/7086
INDEL	Breast	IFI6_G109_N110insTN	HLA-C15:02	GTNNIGALM	0.9911	0.877	0.9472	121.2	0.1227	9320.09	1/888	1/7086
INDEL	Breast	MDFIC_N98Efs*23	HLA-A31:01	EQWKWNSPR	0.9558	0.7471	0.1227	85.9	0.6723	10.58	1/888	1/7086
INDEL	Breast	MDFIC_N98Efs*23	HLA-A31:01	SEQWKWNSPR	0.9081	0.8081	1.8644	40.9	0.3368	10.58	1/888	1/7086
INDEL	Breast	MDFIC_N98Efs*23	HLA-A31:01	KWNSPRGQTR	0.9158	0.6311	0.8087	99.5	0.7533	10.58	1/888	1/7086
INDEL	Breast	HS6ST2_L494Ffs*9	HLA-B44:03	MELYSYAKDF	0.9969	0.7965	1.2301	27	0.0233	6.8	1/888	1/7086
INDEL	Breast	F11R_S275Tfs*69	HLA-A02:01	STASLVPEV	0.9849	0.6807	0.1498	68.8	0.8175	123.17	1/888	1/7086
INDEL	Breast	F11R_S275Tfs*69	HLA-C02:02	STASLVPEV	0.6772	0.9777	0.2825	326.7	0.1987	123.17	1/888	1/7086
INDEL	Breast	F11R_S275Tfs*69	HLA-B58:01	NSNRPRHSW	0.9954	0.5401	0.1609	74	0.3849	123.17	1/888	1/7086
INDEL	Breast	F11R_S275Tfs*69	HLA-B58:01	KENSNRPRHSW	0.9987	0.8365	1.4943	241.7	0.891	123.17	1/888	1/7086
INDEL	Breast	TMEM120A_L326Vfs*74	HLA-A02:01	FLGNFFTTV	0.9988	0.7708	0.0007	3.1	0.0093	26.38	1/888	1/7086
INDEL	Breast	DLC1_S1024Yfs*27	HLA-B58:01	VSLQINCQY	0.9747	0.7306	0.5999	74.5	0.3867	4.46	1/888	1/7086
INDEL	Breast	DLC1_S1024Yfs*27	HLA-C03:02	VSLQINCQY	0.8691	0.9221	0.9129	172.7	0.6911	4.46	1/888	1/7086
INDEL	Breast	DLC1_S1024Yfs*27	HLA-C03:02	KANGPAGEI	0.974	0.9702	0.7473	397.6	1.2507	4.46	1/888	1/7086
INDEL	Breast	SON_S2248_M2249del	HLA-C03:02	NAFDLEAML	0.9964	0.954	0.538	381.6	1.216	69.68	1/888	1/7086
INDEL	Breast	GATA3_S426Yfs*50	HLA-B56:01	TPMHPPYPA	0.9983	0.5839	0.0919	18	0.0099	673.13	1/888	1/7086
INDEL	Breast	GATA3_S426Yfs*50	HLA-B56:01	CPLDHTTPPA	0.9866	0.6967	0.4548	67.6	0.0441	673.13	1/888	1/7086
INDEL	Breast	DNAH14_E588Dfs*42	HLA-A02:01	ILFQPQLLL	0.9849	0.7939	0.2138	33.9	0.4504	1.36	2/888	2/7086
INDEL	Breast	DNAH14_E588Dfs*42	HLA-A02:01	ILFQPQLLL	0.9849	0.7939	0.2138	33.9	0.4504	1.36	2/888	2/7086
INDEL	Breast	DNAH14_E588Dfs*42	HLA-C12:03	ILFQPQLLL	0.97	0.9951	0.6429	271.9	1.0136	1.36	1/888	1/7086
INDEL	Breast	TP53_H115Ifs*8	HLA-A02:01	FLILGQPSL	0.9884	0.6883	0.0452	7.9	0.0805	21.9	2/888	2/7086
INDEL	Breast	TP53_H115Ifs*8	HLA-A02:01	FLILGQPSL	0.9884	0.6883	0.0452	7.9	0.0805	21.9	2/888	2/7086
INDEL	Breast	TP53_H115Ifs*8	HLA-C12:03	FLILGQPSL	0.997	0.9927	0.348	148.5	0.6414	21.9	1/888	1/7086
INDEL	Breast	LUC7L3_F76Lfs*2	HLA-C12:03	KQYEKSSRL	0.9799	0.9489	0.4263	318.1	1.1352	34.17	1/888	1/7086
INDEL	Breast	UBE3A_D813Cfs*29	HLA-A32:01	KVTYISYLL	0.9761	0.7673	0.3941	10.8	0.0144	33.28	1/888	1/7086
INDEL	Breast	DENND4C_L1674Rfs*21	HLA-C12:03	QSSPCFCAL	0.9641	0.9848	0.8361	241.4	0.9402	38.54	1/888	1/7086
INDEL	Breast	ABCA9_T331Rfs*54	HLA-A24:02	PFLRAWLCF	0.9672	0.8757	0.7438	132.2	0.2611	2.44	1/888	1/7086
INDEL	Breast	ABCA9_T331Rfs*54	HLA-C12:03	RAWLCFSLL	0.7287	0.9931	1.0292	383	1.3014	2.44	1/888	1/7086
INDEL	Breast	ABCA9_T331Rfs*54	HLA-C12:03	FLAPLPSLL	0.9991	0.9949	0.0979	15.9	0.0509	2.44	1/888	1/7086
INDEL	Breast	ABCA9_T331Rfs*54	HLA-A24:02	AWLCFSLLSF	0.987	0.6463	0.6233	53.5	0.1239	2.44	1/888	1/7086
INDEL	Breast	PPP1R15B_R19Lfs*12	HLA-A02:01	FLFPSAIAS	0.981	0.5525	0.4409	52.8	0.6595	51.61	1/888	1/7086
INDEL	Breast	PPP1R15B_R19Lfs*12	HLA-A02:01	FLFPSAIASRL	0.9933	0.685	0.1025	24.2	0.3318	51.61	1/888	1/7086
INDEL	Breast	CHERP_A251Pfs*404	HLA-B56:01	LPLPSRPPP	0.9811	0.5005	0.0441	493.3	0.3561	20.51	1/888	1/7086
INDEL	Breast	CHERP_A251Pfs*404	HLA-A02:01	GLTSLTPWL	0.9403	0.8027	0.2573	27.1	0.3682	20.51	1/888	1/7086
INDEL	Breast	CHERP_A251Pfs*404	HLA-A02:01	SLTPWLLGA	0.9681	0.8241	0.0888	25.5	0.3485	20.51	1/888	1/7086
INDEL	Breast	CHERP_A251Pfs*404	HLA-B56:01	LPKWGPLTT	0.851	0.7597	0.2446	447.3	0.3316	20.51	1/888	1/7086
INDEL	Breast	CHERP_A251Pfs*404	HLA-A02:01	TLATACLIL	0.9147	0.6445	1.3803	248.9	1.8947	20.51	1/888	1/7086
INDEL	Breast	CHERP_A251Pfs*404	HLA-A02:01	ILASTSTRL	0.9588	0.836	0.2868	109.6	1.1203	20.51	1/888	1/7086
INDEL	Breast	CHERP_A251Pfs*404	HLA-A02:01	TLTSALPPM	0.9331	0.6098	0.5128	140.9	1.3215	20.51	1/888	1/7086
INDEL	Breast	CHERP_A251Pfs*404	HLA-A02:01	GLTSLTPWLL	0.9632	0.7472	0.555	52.9	0.6596	20.51	1/888	1/7086
INDEL	Breast	CHERP_A251Pfs*404	HLA-B56:01	HPTAPPGTTA	0.9768	0.6801	0.1625	173.8	0.1344	20.51	1/888	1/7086
INDEL	Breast	CHERP_A251Pfs*404	HLA-B56:01	LPKWGPLTTT	0.8786	0.7564	0.2054	352.5	0.2702	20.51	1/888	1/7086
INDEL	Breast	ZNF772_D230Pfs*280	HLA-C05:01	FSSTMPLTM	0.9986	0.8896	0.0979	177.4	0.0857	3.8	1/888	1/7086
INDEL	Breast	ZNF772_D230Pfs*280	HLA-A02:01	TLEKCLMSV	0.9541	0.5406	0.4825	60.6	0.7383	3.8	1/888	1/7086
INDEL	Breast	ZNF772_D230Pfs*280	HLA-A02:01	LLYIKEYTL	0.9776	0.5314	0.0618	43	0.5541	3.8	1/888	1/7086
INDEL	Breast	ZNF772_D230Pfs*280	HLA-C05:01	NTDSLNIGV	0.9998	0.7433	0.2213	426.8	0.1701	3.8	1/888	1/7086
INDEL	Breast	ZNF772_D230Pfs*280	HLA-A02:01	SLNIGVFIL	0.96	0.6019	0.4167	102.9	1.0767	3.8	1/888	1/7086
INDEL	Breast	ZNF772_D230Pfs*280	HLA-A02:01	SLAKALTLL	0.9628	0.517	0.0481	29.9	0.4003	3.8	1/888	1/7086
INDEL	Breast	ZNF772_D230Pfs*280	HLA-A02:01	IMVKSLMCA	0.9363	0.5195	0.7456	132.5	1.2682	3.8	1/888	1/7086
INDEL	Breast	ZNF772_D230Pfs*280	HLA-B44:02	GEACKPAQAF	0.998	0.5367	0.2653	45.7	0.0558	3.8	1/888	1/7086
INDEL	Breast	ZNF772_D230Pfs*280	HLA-A02:01	YLLSTRESTL	0.9625	0.6329	0.7833	165.8	1.4679	3.8	1/888	1/7086
INDEL	Breast	ZNF772_D230Pfs*280	HLA-A02:01	STLEKCLMSV	0.9837	0.5479	0.8538	73.9	0.86	3.8	1/888	1/7086
INDEL	Breast	ZNF772_D230Pfs*280	HLA-A02:01	FILEQGLMSA	0.9941	0.5509	0.0808	19.6	0.2654	3.8	1/888	1/7086
INDEL	Breast	ZNF772_D230Pfs*280	HLA-A11:01	ASHVGSSLAK	0.9991	0.5198	0.1977	27.1	0.1594	3.8	1/888	1/7086
INDEL	Breast	ZNF772_D230Pfs*280	HLA-A02:01	IMVKSLMCAV	0.9739	0.6235	0.7356	31.8	0.4249	3.8	1/888	1/7086
INDEL	Breast	ZNF772_D230Pfs*280	HLA-A11:01	RGLPSSATGK	0.9495	0.6032	0.8492	414.8	1.5831	3.8	1/888	1/7086
INDEL	Breast	ZNF772_D230Pfs*280	HLA-A02:01	FTLEKGHISAV	0.98	0.6776	1.0445	92.7	1.0091	3.8	1/888	1/7086
INDEL	Breast	RUNX1_I315Hfs*258	HLA-C03:04	HALSRRLHL	0.9984	0.9921	0.5619	114.3	0.3938	55.85	1/888	1/7086
INDEL	Breast	RUNX1_I315Hfs*258	HLA-A02:01	ALSRRLHLL	0.8947	0.6054	0.267	251.9	1.9091	55.85	1/888	1/7086
INDEL	Breast	RUNX1_I315Hfs*258	HLA-C14:02	VGHGLGHAL	0.6772	0.9732	1.0547	268.8	0.7851	55.85	1/888	1/7086
INDEL	Breast	RUNX1_I315Hfs*258	HLA-C03:04	VGHGLGHAL	0.9989	0.9826	0.4061	215.9	0.5911	55.85	1/888	1/7086
INDEL	Breast	RUNX1_I315Hfs*258	HLA-A02:01	GLGHALPHL	0.9872	0.7802	0.2239	37.2	0.4879	55.85	1/888	1/7086
INDEL	Breast	RUNX1_I315Hfs*258	HLA-C03:04	HALPHLPAA	0.9928	0.991	0.1656	154.2	0.4765	55.85	1/888	1/7086
INDEL	Breast	RUNX1_I315Hfs*258	HLA-C03:04	LPHLPAAAL	0.9957	0.9931	0.0583	238.9	0.6304	55.85	1/888	1/7086
INDEL	Breast	RUNX1_I315Hfs*258	HLA-C03:04	LVASAGRPV	0.74	0.9884	1.2592	109.1	0.3831	55.85	1/888	1/7086
INDEL	Breast	RUNX1_I315Hfs*258	HLA-C03:04	RPVPSQLAL	0.9875	0.9481	0.7106	130.8	0.4303	55.85	1/888	1/7086
INDEL	Breast	RUNX1_I315Hfs*258	HLA-A02:01	RLGRLLPVL	0.979	0.7903	0.68	126.7	1.2323	55.85	1/888	1/7086
INDEL	Breast	RUNX1_I315Hfs*258	HLA-A32:01	RLGRLLPVL	0.9825	0.9928	0.7833	114	0.1945	55.85	1/888	1/7086
INDEL	Breast	RUNX1_I315Hfs*258	HLA-A02:01	ALAAAHPAA	0.9651	0.5045	0.3806	205.6	1.6756	55.85	1/888	1/7086
INDEL	Breast	RUNX1_I315Hfs*258	HLA-C14:02	LAAAHPAAL	0.8574	0.9887	0.3851	83.5	0.2843	55.85	1/888	1/7086
INDEL	Breast	RUNX1_I315Hfs*258	HLA-C03:04	LAAAHPAAL	0.9998	0.9915	0.1149	2.9	0.0077	55.85	1/888	1/7086
INDEL	Breast	RUNX1_I315Hfs*258	HLA-A32:01	RQFPALPSHL	0.9922	0.9437	0.2039	455.6	0.7034	55.85	1/888	1/7086
INDEL	Breast	RUNX1_I315Hfs*258	HLA-C03:04	ALAAAHPAAL	0.9955	0.9872	0.7683	293.8	0.714	55.85	1/888	1/7086
INDEL	Breast	RUNX1_I315Hfs*258	HLA-C03:04	HALPHLPAAAL	0.9999	0.9948	0.1132	430	0.8991	55.85	1/888	1/7086
INDEL	Breast	LRFN2_L235Cfs*89	HLA-B35:01	TPFAPPCPL	0.9868	0.9606	0.4183	75.2	0.2598	4.27	1/888	1/7086
INDEL	Breast	LRFN2_L235Cfs*89	HLA-C03:03	TPFAPPCPL	0.9929	0.9944	0.786	195.5	0.5554	4.27	1/888	1/7086
INDEL	Breast	LRFN2_L235Cfs*89	HLA-C03:03	FAPPCPLVL	0.9997	0.9966	0.0822	14.2	0.0561	4.27	1/888	1/7086
INDEL	Breast	LRFN2_L235Cfs*89	HLA-C03:03	LGVTHFTAI	0.9876	0.9787	0.8271	122.8	0.4126	4.27	1/888	1/7086
INDEL	Breast	LRFN2_L235Cfs*89	HLA-C03:03	KPLGTPAPL	0.9791	0.9937	1.6984	287	0.7039	4.27	1/888	1/7086
INDEL	Breast	CDH1_S19Rfs*39	HLA-A02:01	LLLQVSRPL	0.9106	0.539	0.5671	131.8	1.2644	26.29	1/888	1/7086
INDEL	Breast	CDH1_S19Rfs*39	HLA-C07:02	SRSPATLAL	0.8334	0.8919	0.0131	53.5	0.0248	26.29	1/888	1/7086
INDEL	Breast	CDH1_S19Rfs*39	HLA-B07:02	SARSRSPATL	0.9922	0.6511	1.004	99.8	0.2961	26.29	1/888	1/7086
INDEL	Breast	ZNF624_H350Lfs*137	HLA-A02:01	VLKRNLISV	0.9614	0.6722	0.0808	127.8	1.2393	2.67	1/888	1/7086
INDEL	Breast	ZNF624_H350Lfs*137	HLA-A02:01	CVGNLLASV	0.8952	0.5492	1.3273	154.1	1.4065	2.67	1/888	1/7086
INDEL	Breast	ZNF624_H350Lfs*137	HLA-A02:01	NLLASVPVL	0.9602	0.6215	0.0848	36.1	0.4755	2.67	1/888	1/7086
INDEL	Breast	ZNF624_H350Lfs*137	HLA-A02:01	KLLVINQNL	0.9689	0.5541	0.0835	90.6	0.9934	2.67	1/888	1/7086
INDEL	Breast	ZNF624_H350Lfs*137	HLA-C07:02	VRNPTNVMI	0.8336	0.9556	0.0601	325.4	0.2154	2.67	1/888	1/7086
INDEL	Breast	ZNF624_H350Lfs*137	HLA-C07:02	LVYIRRPTL	0.7108	0.7894	1.2398	359.4	0.2378	2.67	1/888	1/7086
INDEL	Breast	ZNF624_H350Lfs*137	HLA-A02:01	SLLRIPQFL	0.9589	0.6834	0.0734	29	0.3902	2.67	1/888	1/7086
INDEL	Breast	ZNF624_H350Lfs*137	HLA-B44:03	IEVIQALSY	0.9955	0.8966	0.1272	101.7	0.1172	2.67	1/888	1/7086
INDEL	Breast	ZNF624_H350Lfs*137	HLA-A02:01	FIASSSLMVL	0.9883	0.6354	0.5279	138.4	1.304	2.67	1/888	1/7086
INDEL	Breast	ZNF624_H350Lfs*137	HLA-A02:01	MVLKRNLISV	0.9601	0.5143	1.1855	109.6	1.1205	2.67	1/888	1/7086
INDEL	Breast	ZNF624_H350Lfs*137	HLA-A02:01	NLLASVPVLI	0.984	0.5051	0.5962	95.8	1.0302	2.67	1/888	1/7086
INDEL	Breast	ZNF624_H350Lfs*137	HLA-A02:01	VLISTREFKL	0.9877	0.8112	1.2078	229.4	1.792	2.67	1/888	1/7086
INDEL	Breast	AASDHPPT_K6Wfs*56	HLA-A24:02	VFPAWCHPW	0.9901	0.8856	0.0383	21.8	0.0429	17.35	1/888	1/7086
INDEL	Breast	AASDHPPT_K6Wfs*56	HLA-C03:03	CAGPFPAAL	0.9997	0.9934	0.2712	30.9	0.1395	17.35	1/888	1/7086
INDEL	Breast	AASDHPPT_K6Wfs*56	HLA-C12:03	CAGPFPAAL	0.9933	0.9921	0.3685	90.2	0.4089	17.35	1/888	1/7086
INDEL	Breast	AASDHPPT_K6Wfs*56	HLA-C03:03	FSPRRRSAL	0.9964	0.9792	0.4916	283.7	0.6989	17.35	1/888	1/7086
INDEL	Breast	AASDHPPT_K6Wfs*56	HLA-C12:03	FSPRRRSAL	0.9949	0.9863	0.5583	52.6	0.2348	17.35	1/888	1/7086
INDEL	Breast	AASDHPPT_K6Wfs*56	HLA-B15:01	RSALASSSL	0.9715	0.9387	1.3176	450.3	1.5872	17.35	1/888	1/7086
INDEL	Breast	AASDHPPT_K6Wfs*56	HLA-C03:03	RSALASSSL	0.9894	0.9944	0.4753	39.4	0.1769	17.35	1/888	1/7086
INDEL	Breast	AASDHPPT_K6Wfs*56	HLA-C12:03	RSALASSSL	0.9276	0.9934	0.5982	75	0.3507	17.35	1/888	1/7086
INDEL	Breast	AASDHPPT_K6Wfs*56	HLA-C03:03	ASSSLPGTL	0.9974	0.9912	0.5779	314.3	0.7433	17.35	1/888	1/7086
INDEL	Breast	AASDHPPT_K6Wfs*56	HLA-C12:03	ASSSLPGTL	0.8412	0.991	0.6572	279.2	1.0338	17.35	1/888	1/7086
INDEL	Breast	AASDHPPT_K6Wfs*56	HLA-A24:02	MVFPAWCHPW	0.9486	0.7161	1.2561	111.5	0.2301	17.35	1/888	1/7086
INDEL	Breast	GATA3_S404Qfs*97	HLA-C03:03	HAHADAPAI	0.984	0.9944	0.3124	28	0.1228	966.15	1/888	1/7086
INDEL	Breast	GATA3_S404Qfs*97	HLA-C12:02	HAHADAPAI	0.829	0.9898	0.3753	249.3	0.3638	966.15	1/888	1/7086
INDEL	Breast	PCM1_P790Qfs*28	HLA-A32:01	VQANLFLSL	0.8265	0.7049	0.7081	200	0.3526	65.72	1/888	1/7086
INDEL	Breast	CDH1_Y754Afs*5	HLA-A31:01	DTRDNVYAPR	0.8845	0.5937	0.4001	351.5	1.7085	105.5	1/888	1/7086
INDEL	Breast	GATA3_D335Gfs*21	HLA-C07:02	RRNANGGTL	0.8098	0.9234	0.8043	182.3	0.1159	692.87	1/888	1/7086
INDEL	Breast	GATA3_D335Gfs*21	HLA-B15:27	AMPVGSTTSF	0.9997	0.9807	0.1098	14.1	0.0145	692.87	1/888	1/7086
INDEL	Breast	GATA3_D335Gfs*21	HLA-B15:27	SAMPVGSTTSF	0.9999	0.9797	0.1418	318.5	0.7828	692.87	1/888	1/7086
INDEL	Breast	FASN_C2045Afs*26	HLA-A02:03	SQAWPCSGA	0.5253	0.741	1.4863	87.4	1.7465	49.91	1/888	1/7086
INDEL	Breast	ATPAF1_F210Lfs*2	HLA-B07:02	LPRREGYEFL	0.9971	0.5971	0.0861	24.8	0.0897	19.68	1/888	1/7086
INDEL	Breast	SV2A_E138Rfs*39	HLA-C16:01	AASSGHCIL	0.5368	0.9949	0.4599	108.9	0.3749	1.21	1/888	1/7086
INDEL	Breast	SV2A_E138Rfs*39	HLA-B07:02	KPSYGSVATA	0.9923	0.5143	0.5924	138.1	0.3705	1.21	1/888	5/7086
INDEL	Breast	SV2A_E138Rfs*39	HLA-B07:02	KPSYGSVATAA	0.9993	0.663	0.5904	462.4	0.7932	1.21	1/888	5/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-B07:02	RPISGRPV	0.9997	0.5826	0.3769	17.3	0.0592	18.18	3/888	4/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-C16:01	RMHKNRPPM	0.7201	0.9738	1.4215	83.4	0.2916	18.18	1/888	1/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-B07:02	RPPMSVLSV	0.996	0.5742	0.2856	67.4	0.2179	18.18	3/888	4/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-A11:01	ATSCKPIFR	0.995	0.6799	0.0187	33.1	0.1982	18.18	1/888	2/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-C07:02	FRPISGRPV	0.6495	0.9524	0.5454	335.7	0.2225	18.18	3/888	5/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-B07:02	RPISGRPVC	0.9961	0.6689	0.1886	37.9	0.1311	18.18	3/888	4/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-C16:01	SGRPVCTSL	0.5571	0.9859	0.4153	252.2	0.8145	18.18	1/888	1/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-A11:01	GATSCKPIFR	0.9662	0.8341	1.0601	258.5	1.1889	18.18	1/888	2/7086
INDEL	Breast	ZNF687_H733Mfs*30	HLA-B07:02	RPISGRPVCT	0.983	0.6161	0.2335	171.6	0.4264	18.18	3/888	4/7086
INDEL	Breast	COPA_N171Tfs*11	HLA-A11:01	KTCPLVRWNR	0.9936	0.5388	0.5779	338.5	1.4073	81.81	1/888	2/7086
INDEL	Breast	SOAT1_F382Lfs*69	HLA-C16:01	YALVTGCSI	0.819	0.9871	0.2978	27.3	0.0697	10.39	1/888	1/7086
INDEL	Breast	SOAT1_F382Lfs*69	HLA-C16:01	WSMTGYITM	0.9535	0.9494	0.6911	18.9	0.0402	10.39	1/888	1/7086
INDEL	Breast	SOAT1_F382Lfs*69	HLA-C16:01	SMTGYITML	0.8341	0.9415	0.2699	255.1	0.8229	10.39	1/888	1/7086
INDEL	Breast	SOAT1_F382Lfs*69	HLA-C16:01	YITMLTRTF	0.8258	0.9335	0.367	73.9	0.2578	10.39	1/888	1/7086
INDEL	Breast	SOAT1_F382Lfs*69	HLA-A11:01	RTFSGFSPR	0.9984	0.5893	0.0062	7.9	0.0164	10.39	1/888	1/7086
INDEL	Breast	CAPN2_G198Vfs*20	HLA-C16:01	EALSGVPPL	0.7011	0.978	0.7415	372	1.095	25.62	1/888	1/7086
INDEL	Breast	CAPN2_G198Vfs*20	HLA-A11:01	ALSGVPPLR	0.9726	0.6218	0.1821	388.3	1.5255	25.62	1/888	1/7086
INDEL	Breast	CAPN2_G198Vfs*20	HLA-C16:01	ASKTSPEAL	0.7669	0.988	0.4808	388.6	1.1375	25.62	1/888	1/7086
INDEL	Breast	TET3_P679Lfs*5	HLA-C07:02	SRDSLLPLL	0.9503	0.9778	0.3941	319.1	0.211	8.97	1/888	2/7086
INDEL	Breast	TET3_P679Lfs*5	HLA-B07:02	SPSRDSLLPLL	0.9992	0.5308	0.5165	286.3	0.5998	8.97	1/888	2/7086
INDEL	Breast	GORASP2_T418Lfs*74	HLA-B07:02	LPRPPPPL	0.9998	0.715	0.2446	14.5	0.0455	62.48	1/888	1/7086
INDEL	Breast	GORASP2_T418Lfs*74	HLA-C16:01	LTVDVTPPL	0.9664	0.972	0.4232	39.5	0.1184	62.48	1/888	1/7086
INDEL	Breast	GORASP2_T418Lfs*74	HLA-B07:02	TPPQSARSL	0.9991	0.575	0.23	209.7	0.4859	62.48	1/888	1/7086
INDEL	Breast	GORASP2_T418Lfs*74	HLA-B07:02	SARSLFLRL	0.8354	0.5192	0.3736	418.5	0.7517	62.48	1/888	1/7086
INDEL	Breast	GORASP2_T418Lfs*74	HLA-C16:01	SARSLFLRL	0.6716	0.9855	0.1255	111.5	0.3825	62.48	1/888	1/7086
INDEL	Breast	GORASP2_T418Lfs*74	HLA-C16:01	RSLFLRLWM	0.7765	0.9909	1.4522	152.6	0.5203	62.48	1/888	1/7086
INDEL	Breast	GORASP2_T418Lfs*74	HLA-C07:02	LRLWMPMLL	0.9908	0.9685	0.511	56.2	0.0266	62.48	1/888	1/7086
INDEL	Breast	SATB1_P352Lfs*6	HLA-C16:01	YLNHPPLSV	0.6254	0.971	0.0315	98	0.3417	3.72	1/888	1/7086
INDEL	Breast	NAALADL2_G497Efs*35	HLA-C07:02	RRFFRKMLW	0.6929	0.9573	0.4865	283.9	0.1867	3.27	1/888	1/7086
INDEL	Breast	NAALADL2_G497Efs*35	HLA-C07:02	FRKMLWLIL	0.9231	0.9413	0.9315	226.8	0.1488	3.27	1/888	1/7086
INDEL	Breast	HERC3_K413Nfs*48	HLA-C16:01	RQNSQNTTM	0.9143	0.9833	0.9711	226.1	0.739	6.57	1/888	1/7086
INDEL	Breast	HERC3_K413Nfs*48	HLA-C16:01	TMQIQSMVL	0.7678	0.9776	1.7092	316.8	0.9813	6.57	1/888	1/7086
INDEL	Breast	HERC3_K413Nfs*48	HLA-C16:01	MQIQSMVLF	0.9519	0.9762	1.7092	283.8	0.901	6.57	1/888	1/7086
INDEL	Breast	HERC3_K413Nfs*48	HLA-C07:02	FRYYLLQPV	0.765	0.9787	1.3306	97.9	0.0535	6.57	1/888	1/7086
INDEL	Breast	HERC3_K413Nfs*48	HLA-A23:01	YYLLQPVGM	0.9501	0.6001	0.0452	369.4	0.858	6.57	1/888	1/7086
INDEL	Breast	HERC3_K413Nfs*48	HLA-C07:02	KRVPKSLGL	0.9444	0.932	0.2557	214.4	0.1402	6.57	1/888	1/7086
INDEL	Breast	HERC3_K413Nfs*48	HLA-A23:01	RYYLLQPVGM	0.9292	0.7107	0.8004	441.5	0.9612	6.57	1/888	1/7086
INDEL	Breast	HERC3_K413Nfs*48	HLA-A23:01	YYLLQPVGMEV	0.9217	0.6812	1.8773	479.8	1.011	6.57	1/888	1/7086
INDEL	Breast	PDLIM3_P352Qfs*55	HLA-C16:01	RAMTRSLCI	0.9413	0.968	0.4563	24.5	0.0599	2.8	1/888	1/7086
INDEL	Breast	PDLIM3_P352Qfs*55	HLA-B07:02	KPQRAMTRSL	0.9983	0.5163	0.1336	3.7	0.0073	2.8	1/888	1/7086
INDEL	Breast	FOXP4_P412Rfs*77	HLA-B07:02	RPQPLSPL	0.9984	0.613	0.4426	7.1	0.013	44.7	1/888	1/7086
INDEL	Breast	FOXP4_P412Rfs*77	HLA-B07:02	HPRPRPQPL	0.9998	0.7166	0.0919	3.6	0.0071	44.7	1/888	1/7086
INDEL	Breast	FOXP4_P412Rfs*77	HLA-B07:02	RPRPQPLSP	0.9979	0.6691	0.0686	148.6	0.3873	44.7	1/888	1/7086
INDEL	Breast	FOXP4_P412Rfs*77	HLA-A23:01	LYGPLAWAL	0.9592	0.5831	0.0734	41.3	0.1692	44.7	1/888	1/7086
INDEL	Breast	FOXP4_P412Rfs*77	HLA-C07:02	LYGPLAWAL	0.5643	0.9925	0.1855	431.7	0.2831	44.7	1/888	1/7086
INDEL	Breast	FOXP4_P412Rfs*77	HLA-C16:01	LAWALPPCM	0.7007	0.987	0.5419	108.9	0.3751	44.7	1/888	1/7086
INDEL	Breast	FOXP4_P412Rfs*77	HLA-B07:02	SPQSWPRIM	0.9982	0.7482	0.0396	38.1	0.132	44.7	1/888	1/7086
INDEL	Breast	FOXP4_P412Rfs*77	HLA-B07:02	SARPSWKPL	0.9989	0.5799	0.4167	21.3	0.0748	44.7	1/888	1/7086
INDEL	Breast	FOXP4_P412Rfs*77	HLA-C16:01	SARPSWKPL	0.5794	0.9784	0.4563	78.3	0.2741	44.7	1/888	1/7086
INDEL	Breast	FOXP4_P412Rfs*77	HLA-B07:02	HPRPRPQPLS	0.9838	0.5927	0.9059	79	0.2469	44.7	1/888	1/7086
INDEL	Breast	FOXP4_P412Rfs*77	HLA-B07:02	RPRPQPLSPL	0.9998	0.6606	0.1383	2.1	0.0043	44.7	1/888	1/7086
INDEL	Breast	FOXP4_P412Rfs*77	HLA-B07:02	SPLYGPLAWAL	0.9991	0.5883	0.7514	134.2	0.3639	44.7	1/888	1/7086
INDEL	Breast	ESCO2_N304Mfs*37	HLA-C16:01	KVDKMRLFL	0.8844	0.9398	0.3639	167.4	0.5656	2.74	1/888	1/7086
INDEL	Breast	ESCO2_N304Mfs*37	HLA-C07:02	MRLFLQRIL	0.9499	0.9751	0.3254	116.3	0.0628	2.74	1/888	1/7086
INDEL	Breast	ESCO2_N304Mfs*37	HLA-C16:01	RLFLQRILL	0.9022	0.9793	0.7151	188.7	0.6288	2.74	1/888	1/7086
INDEL	Breast	ESCO2_N304Mfs*37	HLA-C07:02	IRQFLLSPL	0.8938	0.8454	1.0192	422	0.2773	2.74	1/888	1/7086
INDEL	Breast	ESCO2_N304Mfs*37	HLA-C16:01	LSIQSSVHL	0.9658	0.9694	0.5619	91	0.3182	2.74	1/888	1/7086
INDEL	Breast	ESCO2_N304Mfs*37	HLA-C07:02	MRLFLQRILL	0.9969	0.9677	1.3729	361.8	0.2393	2.74	1/888	1/7086
INDEL	Breast	HOOK3_M660Rfs*16	HLA-C07:02	ERWKRNILL	0.9392	0.8648	0.1947	424.1	0.2786	5.85	1/888	1/7086
INDEL	Breast	SEMA4D_P683Qfs*83	HLA-C16:01	SLFSSSASF	0.7543	0.9884	0.6212	85.8	0.2999	17.94	1/888	1/7086
INDEL	Breast	SEMA4D_P683Qfs*83	HLA-C16:01	SSASFSTTA	0.6938	0.9818	1.566	479.3	1.3375	17.94	1/888	1/7086
INDEL	Breast	SEMA4D_P683Qfs*83	HLA-C16:01	SASFSTTAI	0.7813	0.9731	0.5264	27	0.0688	17.94	1/888	1/7086
INDEL	Breast	SEMA4D_P683Qfs*83	HLA-B07:02	RPPPPGPSPF	0.9995	0.6732	0.4033	44.6	0.1572	17.94	1/888	1/7086
INDEL	Breast	SEMA4D_P683Qfs*83	HLA-B07:02	SPSSTRRKPC	0.8893	0.6041	1.1142	360.1	0.6899	17.94	1/888	1/7086
INDEL	Breast	SEMA4D_P683Qfs*83	HLA-C16:01	SSLFSSSASF	0.9694	0.9886	1.4441	393.2	1.1494	17.94	1/888	1/7086
INDEL	Breast	SEMA4D_P683Qfs*83	HLA-B07:02	RPPPPGPSPFL	0.9999	0.6233	0.3717	290.5	0.6055	17.94	1/888	1/7086
INDEL	Breast	SEMA4D_P683Qfs*83	HLA-B07:02	SPFLPSLRPPA	0.9996	0.6199	0.8422	184.8	0.4483	17.94	1/888	1/7086
INDEL	Breast	SEMA4D_P683Qfs*83	HLA-B07:02	LPSLRPPAHPA	0.9996	0.6431	0.5671	143.7	0.3796	17.94	1/888	1/7086
INDEL	Breast	NUP188_Y154Ifs*16	HLA-C07:02	ERHPIGLNM	0.8382	0.8109	0.4018	407.7	0.2685	17.88	1/888	1/7086
INDEL	Breast	NUP188_Y154Ifs*16	HLA-C16:01	IGLNMQTVL	0.8546	0.9766	1.0781	166.7	0.5635	17.88	1/888	1/7086
INDEL	Breast	ANK3_D3368Ifs*60	HLA-C16:01	SGKIMNLAL	0.757	0.9807	0.7683	321.2	0.9913	5.58	1/888	1/7086
INDEL	Breast	ANK3_D3368Ifs*60	HLA-C16:01	KIMNLALAL	0.9791	0.9586	0.5128	19.1	0.0408	5.58	1/888	1/7086
INDEL	Breast	ANK3_D3368Ifs*60	HLA-C16:01	TSPSQSVPL	0.7745	0.9758	0.511	384.8	1.1273	5.58	1/888	1/7086
INDEL	Breast	ANK3_D3368Ifs*60	HLA-C07:02	TRMPQRSTL	0.9392	0.9603	0.0109	58.7	0.0281	5.58	1/888	1/7086
INDEL	Breast	ANK3_D3368Ifs*60	HLA-C07:02	QRSTLWMAM	0.9939	0.9404	0.7702	315.1	0.2082	5.58	1/888	1/7086
INDEL	Breast	ANK3_D3368Ifs*60	HLA-C16:01	MAMTCKMKM	0.9572	0.9648	0.5094	29	0.077	5.58	1/888	1/7086
INDEL	Breast	ANK3_D3368Ifs*60	HLA-C16:01	MTRMPQRSTL	0.9364	0.9767	0.7749	241.7	0.7846	5.58	1/888	1/7086
INDEL	Breast	ANK3_D3368Ifs*60	HLA-C16:01	MAMTCKMKMM	0.92	0.9604	1.8644	403.9	1.177	5.58	1/888	1/7086
INDEL	Breast	KCNQ1_K422Sfs*10	HLA-C16:01	KSSSWTKTM	0.8869	0.9659	0.1641	42.6	0.1299	17.48	1/888	1/7086
INDEL	Breast	SPRYD3_R333Gfs*18	HLA-C16:01	IMFPGTTF	0.9976	0.9764	0.0848	341.6	1.0349	43.72	1/888	1/7086
INDEL	Breast	SPRYD3_R333Gfs*18	HLA-C16:01	GIMFPGTTF	0.5569	0.9786	0.2699	312.7	0.9718	43.72	1/888	1/7086
INDEL	Breast	PCNXL4_F970Lfs*11	HLA-C16:01	CSYSNDLLF	0.6624	0.9758	0.6911	128.2	0.4388	2.82	1/888	1/7086
INDEL	Breast	RNF43_G659Vfs*41	HLA-C16:01	RGVPPSPPL	0.9227	0.9872	0.5181	63.5	0.218	26.49	1/888	4/7086
INDEL	Breast	RNF43_G659Vfs*41	HLA-C16:01	LALGPRMQL	0.9735	0.9795	0.1354	37	0.1081	26.49	1/888	4/7086
INDEL	Breast	RNF43_G659Vfs*41	HLA-C07:02	RFFPITPPV	0.6343	0.9844	1.0601	337.2	0.2235	26.49	1/888	19/7086
INDEL	Breast	RNF43_G659Vfs*41	HLA-C16:01	RFFPITPPV	0.9307	0.9887	1.975	136.5	0.4675	26.49	1/888	4/7086
INDEL	Breast	RNF43_G659Vfs*41	HLA-A23:01	FFPITPPVW	0.9891	0.5758	0.1182	92.7	0.3179	26.49	1/888	7/7086
INDEL	Breast	RNF43_G659Vfs*41	HLA-C16:01	ITPPVWHIL	0.8424	0.9894	0.167	202.6	0.6697	26.49	1/888	4/7086
INDEL	Breast	RNF43_G659Vfs*41	HLA-B07:02	SPPLALGPRM	0.9748	0.5358	0.6333	121	0.34	26.49	1/888	17/7086
INDEL	Breast	RNF43_G659Vfs*41	HLA-B07:02	GPRMQLCTQL	0.9992	0.5551	0.5077	31.1	0.1113	26.49	1/888	17/7086
INDEL	Breast	RNF43_G659Vfs*41	HLA-A23:01	RFFPITPPVW	0.9933	0.5192	0.0356	41.6	0.1705	26.49	1/888	7/7086
INDEL	Breast	RNF43_G659Vfs*41	HLA-B07:02	RGVPPSPPLAL	0.9964	0.6435	0.8931	444.3	0.7766	26.49	1/888	17/7086
INDEL	Breast	GAA_L117Cfs*25	HLA-B07:02	EPRWGSPGA	0.9973	0.619	0.68	496.7	0.8279	83.42	1/888	1/7086
INDEL	Breast	ANKRD12_K723Nfs*45	HLA-C16:01	MINQPRKSM	0.8916	0.9845	0.4718	183.6	0.613	12.92	1/888	2/7086
INDEL	Breast	OSBPL1A_K894Nfs*71	HLA-C16:01	SIKVLIPTM	0.8998	0.9663	0.356	294.9	0.9291	19.71	1/888	2/7086
INDEL	Breast	SMG9_I66Sfs*36	HLA-B07:02	LPRLLQPL	0.9993	0.5766	0.4845	15.3	0.0496	12.5	1/888	1/7086
INDEL	Breast	SMG9_I66Sfs*36	HLA-C16:01	NSHHLQQPL	0.753	0.9754	0.6911	342	1.0357	12.5	1/888	1/7086
INDEL	Breast	SMG9_I66Sfs*36	HLA-B07:02	QPLWRSPSF	0.9969	0.5531	0.0356	50.9	0.1763	12.5	1/888	1/7086
INDEL	Breast	SMG9_I66Sfs*36	HLA-B07:02	QPLLPRLLQPL	0.9965	0.6539	0.6818	61.9	0.2023	12.5	1/888	1/7086
INDEL	Breast	ZMYND8_K635Sfs*14	HLA-C16:01	SAVKKSPSL	0.9533	0.9856	0.1098	27.7	0.0713	38.56	1/888	4/7086
INDEL	Breast	RGAG4_G82Efs*23	HLA-C07:02	ARSPTVSRM	0.8196	0.9387	0.0282	328	0.2172	13.86	1/888	1/7086
INDEL	Breast	RGAG4_G82Efs*23	HLA-B07:02	HARSPTVSRM	0.9967	0.5295	1.8393	80.2	0.2497	13.86	1/888	1/7086
INDEL	Breast	AMOT_S319Vfs*12	HLA-C16:01	SSLTSGGVL	0.566	0.9928	0.7533	128.7	0.4406	10.96	1/888	1/7086
INDEL	Breast	AMOT_S319Vfs*12	HLA-C16:01	LTSGGVLAL	0.9152	0.984	0.2978	44.2	0.1359	10.96	1/888	1/7086
INDEL	Breast	AMOT_S319Vfs*12	HLA-B52:01	LALATISTI	0.9976	0.9758	0.5982	345.3	0.0094	10.96	1/888	1/7086
INDEL	Breast	AMOT_S319Vfs*12	HLA-C16:01	LALATISTI	0.8752	0.9777	0.7081	52	0.1678	10.96	1/888	1/7086
INDEL	Breast	GATA3_G431Rfs*66	HLA-C16:01	SSLSFRHGL	0.9354	0.9441	0.5829	71.1	0.247	1179.02	1/888	1/7086
INDEL	Breast	CDH1_F499Lfs*38	HLA-C07:01	WRGPGNHIL	0.9762	0.8406	0.2122	269.6	0.0978	30.8	1/888	1/7086
INDEL	Breast	KMT2C_M940Afs*9	HLA-A68:02	NSAQYSCVV	0.9849	0.5178	0.6352	102.6	0.7421	8.93	1/888	1/7086
INDEL	Breast	ARID1A_E2250Rfs*28	HLA-C07:01	VRITAVGHL	0.9902	0.5437	0.4347	419.1	0.1449	63.9	1/888	2/7086
INDEL	Breast	ARID1A_E2250Rfs*28	HLA-B57:03	ITVDELIGF	0.9519	0.7848	0.3698	221.4	0.4273	63.9	1/888	1/7086
INDEL	Breast	ARID1A_E2250Rfs*28	HLA-A68:02	ELIGFTSHL	0.9939	0.6157	0.0396	25.5	0.2221	63.9	1/888	1/7086
INDEL	Breast	ARID1A_E2250Rfs*28	HLA-A68:02	TAVGHLGITV	0.9952	0.8037	0.1401	103	0.744	63.9	1/888	1/7086
INDEL	Breast	FNIP2_A755_A758dup	HLA-A68:02	EAADVAADV	0.9916	0.553	0.2526	9.1	0.0543	10.08	1/888	1/7086
INDEL	Breast	SNX18_V617Gfs*17	HLA-C04:01	TFDDSAIIL	0.9989	0.7172	0.0062	265	0.009	20.03	1/888	1/7086
INDEL	Breast	SNX18_V617Gfs*17	HLA-B57:03	YSFSKGSKSTF	0.9995	0.8348	0.2382	369.7	0.6304	20.03	1/888	1/7086
INDEL	Breast	SNRK_A56Wfs*17	HLA-B58:01	KTKLDTLW	0.9987	0.9881	0.1383	57.2	0.3161	25.46	1/888	1/7086
INDEL	Breast	SNRK_A56Wfs*17	HLA-B58:01	VIDKTKLDTLW	0.9994	0.965	0.4183	434.3	1.3023	25.46	1/888	1/7086
INDEL	Breast	MAP3K1_Y1276Mfs*12	HLA-B58:01	VTMSETHLL	0.9901	0.9648	0.1704	265.3	0.9552	18.76	1/888	1/7086
INDEL	Breast	MAP3K1_Y1276Mfs*12	HLA-A02:01	TLMAVKQVTM	0.9771	0.5013	1.5528	250.9	1.9044	18.76	1/888	1/7086
INDEL	Breast	RPL7_K77Nfs*14	HLA-B58:01	MARMARNW	0.9933	0.9777	1.2301	473.4	1.3775	1697.98	1/888	1/7086
INDEL	Breast	RPL7_K77Nfs*14	HLA-B58:01	RMARMARNW	0.9891	0.9629	0.6996	24.2	0.1623	1697.98	1/888	1/7086
INDEL	Breast	RPL7_K77Nfs*14	HLA-C07:01	ARMARNWRL	0.9968	0.7522	0.0697	116.5	0.0457	1697.98	1/888	1/7086
INDEL	Breast	RPL7_K77Nfs*14	HLA-B58:01	LSSESEVSM	0.9036	0.9172	1.7432	458.9	1.3503	1697.98	1/888	1/7086
INDEL	Breast	ATHL1_E700Dfs*66	HLA-A68:02	SSSDSLGGL	0.6583	0.5321	0.7376	438.3	1.8641	13.25	2/888	2/7086
INDEL	Breast	ATHL1_E700Dfs*66	HLA-A68:02	SSSDSLGGL	0.6583	0.5321	0.7376	438.3	1.8641	13.25	2/888	2/7086
INDEL	Breast	ATHL1_E700Dfs*66	HLA-B15:10	SHSLWTLPL	0.9823	0.7629	0.2054	53.8	0.0076	13.25	1/888	1/7086
INDEL	Breast	PRSS27_C214Wfs*44	HLA-A68:02	DSILLRTPA	0.9952	0.9217	0.7151	117.7	0.8133	2.27	2/888	2/7086
INDEL	Breast	PRSS27_C214Wfs*44	HLA-A68:02	DSILLRTPA	0.9952	0.9217	0.7151	117.7	0.8133	2.27	2/888	2/7086
INDEL	Breast	PRSS27_C214Wfs*44	HLA-B53:01	RAAPWCASW	0.9736	0.7011	0.0187	181	0.2087	2.27	1/888	1/7086
INDEL	Breast	PRSS27_C214Wfs*44	HLA-B53:01	MPARATRAAPW	0.9628	0.857	0.5637	38.3	0.0439	2.27	1/888	1/7086
INDEL	Breast	SMG1_A3659Ffs*31	HLA-A68:02	WTFMLSLSV	0.99	0.8241	0.3837	13.4	0.0969	10.23	2/888	2/7086
INDEL	Breast	SMG1_A3659Ffs*31	HLA-A68:02	WTFMLSLSV	0.99	0.8241	0.3837	13.4	0.0969	10.23	2/888	2/7086
INDEL	Breast	SMG1_A3659Ffs*31	HLA-C03:04	HFISTTTSL	0.9424	0.977	0.0481	232.8	0.62	10.23	1/888	1/7086
INDEL	Breast	SMG1_A3659Ffs*31	HLA-A68:02	FISTTTSLGV	0.9801	0.7793	0.8024	43.7	0.3767	10.23	2/888	2/7086
INDEL	Breast	SMG1_A3659Ffs*31	HLA-A68:02	FISTTTSLGV	0.9801	0.7793	0.8024	43.7	0.3767	10.23	2/888	2/7086
INDEL	Breast	SENP1_Q187Afs*38	HLA-C12:03	FSFTPVSM	0.9996	0.9878	0.0523	53.8	0.2407	20.37	1/888	1/7086
INDEL	Breast	SENP1_Q187Afs*38	HLA-C12:03	YSQTHHTFSF	0.9994	0.9805	1.4522	437.2	1.418	20.37	1/888	1/7086
INDEL	Breast	SENP1_Q187Afs*38	HLA-C12:03	HTFSFTPVSM	0.9967	0.9821	0.0979	69.8	0.3291	20.37	1/888	1/7086
INDEL	Breast	MAP3K1_Q1221Rfs*24	HLA-C12:03	YTRDSTRTY	0.5469	0.941	0.0315	11.4	0.0306	34.2	1/888	1/7086
INDEL	Breast	MAP3K1_Q1221Rfs*24	HLA-C12:03	RTYQSKTTV	0.8931	0.9447	0.4078	39.6	0.1701	34.2	1/888	1/7086
INDEL	Breast	MAP3K1_Q1221Rfs*24	HLA-B27:05	QRYHHYSTGY	0.9999	0.6384	0.2978	228.1	0.6946	34.2	1/888	1/7086
INDEL	Breast	SMCHD1_L723Ifs*67	HLA-B27:05	QRNSWLSSK	0.999	0.8649	0.5962	125.9	0.4167	11.43	1/888	1/7086
INDEL	Breast	SMCHD1_L723Ifs*67	HLA-A68:02	WLSSKLFYI	0.9281	0.7385	0.5757	127.2	0.8497	11.43	1/888	1/7086
INDEL	Breast	SMCHD1_L723Ifs*67	HLA-C12:03	LSSKLFYIL	0.9907	0.9819	0.9315	412.8	1.3666	11.43	1/888	1/7086
INDEL	Breast	SMCHD1_L723Ifs*67	HLA-B27:05	KRLFRILVN	0.9993	0.9253	1.5614	240.7	0.7241	11.43	1/888	1/7086
INDEL	Breast	SMCHD1_L723Ifs*67	HLA-B27:05	LRIEIIKKGK	0.9993	0.863	0.5264	259.3	0.7647	11.43	1/888	1/7086
INDEL	Breast	SMCHD1_L723Ifs*67	HLA-B27:05	GQRNSWLSSK	0.9978	0.7795	0.637	123.2	0.4075	11.43	1/888	1/7086
INDEL	Breast	SMCHD1_L723Ifs*67	HLA-B27:05	QRNSWLSSKL	0.9997	0.781	0.7151	96.7	0.3222	11.43	1/888	1/7086
INDEL	Breast	SMCHD1_L723Ifs*67	HLA-B27:05	KRLFRILVNM	0.9999	0.9331	0.6295	19.6	0.0286	11.43	1/888	1/7086
INDEL	Breast	SMCHD1_L723Ifs*67	HLA-B27:05	QRNSWLSSKLF	1	0.7101	0.8108	187.1	0.5852	11.43	1/888	1/7086
INDEL	Breast	COL4A2_I706Sfs*36	HLA-B07:02	GAKGLRGSL	0.9669	0.6488	0.637	228.3	0.5141	137.13	1/888	1/7086
INDEL	Breast	MEIS2_S406Dfs*69	HLA-C12:03	YVSTEPHNV	0.9433	0.9886	0.6616	217.1	0.8759	9.77	1/888	1/7086
INDEL	Breast	MEIS2_S406Dfs*69	HLA-C16:01	STEPHNVKF	0.5915	0.9627	0.2287	463.7	1.3087	9.77	1/888	1/7086
INDEL	Breast	MEIS2_S406Dfs*69	HLA-A31:01	KFCRSQCWR	0.9727	0.6954	0.8087	23.1	0.1707	9.77	1/888	1/7086
INDEL	Breast	MEIS2_S406Dfs*69	HLA-C16:01	TGYGHSCPI	0.5606	0.9908	1.1888	77.7	0.2717	9.77	1/888	1/7086
INDEL	Breast	MEIS2_S406Dfs*69	HLA-C12:03	TGYGHSCPI	0.6101	0.982	1.1763	67.6	0.319	9.77	1/888	1/7086
INDEL	Breast	NRIP1_F529Lfs*11	HLA-C12:03	LIHKIMQGL	0.989	0.9827	1.6127	356.2	1.2322	26.23	1/888	1/7086
INDEL	Breast	NF2_I68_A73del	HLA-A29:02	WFFGLQYTW	0.9551	0.8251	1.3205	197	0.6315	16.57	1/888	1/7086
INDEL	Breast	FADS1_R284Qfs*39	HLA-C03:03	TSTCIPSSL	0.9992	0.9851	0.6715	125.1	0.4177	5.9	1/888	1/7086
INDEL	Breast	NFKBID_V121_A125del	HLA-C03:03	SATYGLPGVL	0.9956	0.9959	1.4566	401.5	0.8619	3.18	1/888	1/7086
INDEL	Breast	DMXL1_D2702Vfs*3	HLA-C12:03	FLVIHARVI	0.8835	0.8332	0.8361	270.1	1.0085	18.31	1/888	1/7086
INDEL	Breast	CEP120_E964del	HLA-C12:03	GVYNHDRII	0.5472	0.8937	0.8629	451.7	1.4492	15.71	1/888	1/7086
INDEL	Breast	UBE3C_Q711Kfs*16	HLA-A32:01	RLIYADKKF	0.9507	0.9343	0.2382	119	0.2026	51.21	1/888	1/7086
INDEL	Breast	UBE3C_Q711Kfs*16	HLA-C12:03	YADKKFKEM	0.946	0.9903	0.0441	85.1	0.389	51.21	1/888	1/7086
INDEL	Breast	UBE3C_Q711Kfs*16	HLA-A32:01	KFKEMVHFW	0.9806	0.9769	0.1055	460.4	0.7098	51.21	1/888	1/7086
INDEL	Breast	UBE3C_Q711Kfs*16	HLA-C12:03	MVHFWMELM	0.9092	0.9888	1.2828	64.7	0.3061	51.21	1/888	1/7086
INDEL	Breast	TP53_K292Gfs*52	HLA-C07:01	RRNHWMENI	0.9962	0.5777	0.0762	288.1	0.1045	31.07	1/888	1/7086
INDEL	Breast	RUNX2_S450Yfs*40	HLA-C16:01	GTYVRILSV	0.9446	0.952	0.0282	215.7	0.7066	2.6	2/888	2/7086
INDEL	Breast	RUNX2_S450Yfs*40	HLA-C16:01	GTYVRILSV	0.9446	0.952	0.0282	215.7	0.7066	2.6	2/888	2/7086
INDEL	Breast	RUNX2_S450Yfs*40	HLA-C16:01	GAGGRPVSF	0.565	0.9928	0.3736	361.4	1.0746	2.6	2/888	2/7086
INDEL	Breast	RUNX2_S450Yfs*40	HLA-C16:01	GAGGRPVSF	0.565	0.9928	0.3736	361.4	1.0746	2.6	2/888	2/7086
INDEL	Breast	RUNX2_S450Yfs*40	HLA-C16:01	VSFQNASAM	0.7677	0.9658	0.4865	14.6	0.0274	2.6	2/888	2/7086
INDEL	Breast	RUNX2_S450Yfs*40	HLA-C16:01	VSFQNASAM	0.7677	0.9658	0.4865	14.6	0.0274	2.6	2/888	2/7086
INDEL	Breast	RUNX2_S450Yfs*40	HLA-C16:01	NASAMHHHL	0.854	0.974	0.2896	468	1.3168	2.6	2/888	2/7086
INDEL	Breast	RUNX2_S450Yfs*40	HLA-C16:01	NASAMHHHL	0.854	0.974	0.2896	468	1.3168	2.6	2/888	2/7086
INDEL	Breast	RUNX2_S450Yfs*40	HLA-B53:01	SAMHHHLEW	0.9909	0.6254	0.0062	37.2	0.0422	2.6	1/888	1/7086
INDEL	Breast	CDC6_A195Lfs*18	HLA-A02:05	KLEAFTFLV	0.9962	0.7539	0.1718	107.3	0.6854	5.72	1/888	1/7086
INDEL	Breast	CDC6_A195Lfs*18	HLA-A02:05	FTFLVLLEL	0.96	0.7143	0.2745	136.9	0.8705	5.72	1/888	1/7086
INDEL	Breast	CDC6_A195Lfs*18	HLA-C16:01	FTFLVLLEL	0.9333	0.9852	0.5195	160.8	0.5458	5.72	2/888	2/7086
INDEL	Breast	CDC6_A195Lfs*18	HLA-C16:01	FTFLVLLEL	0.9333	0.9852	0.5195	160.8	0.5458	5.72	2/888	2/7086
INDEL	Breast	CDC6_A195Lfs*18	HLA-A02:05	FLVLLELEKL	0.9719	0.8608	0.5962	180.4	1.109	5.72	1/888	1/7086
INDEL	Breast	PRSS12_Y403Ffs*17	HLA-B35:01	EASGELSVM	0.9523	0.9294	0.7788	70.3	0.2471	1.56	1/888	1/7086
INDEL	Breast	VARS2_L305Cfs*30	HLA-C02:02	LAAPPPCLL	0.9811	0.989	0.2499	142.6	0.0661	15.38	1/888	1/7086
INDEL	Breast	VARS2_L305Cfs*30	HLA-B35:01	LPSPWMESL	0.9963	0.7552	0.0383	42.7	0.1652	15.38	1/888	1/7086
INDEL	Breast	VARS2_L305Cfs*30	HLA-B35:01	LPSPWMESLM	0.9873	0.8044	1.0091	85.5	0.286	15.38	1/888	1/7086
INDEL	Breast	RPAP3_D490Efs*8	HLA-B35:01	FPTSELQEQ	0.8002	0.9308	1.4399	410.7	0.7775	26.45	1/888	1/7086
INDEL	Breast	RPAP3_D490Efs*8	HLA-B35:01	FPTSELQEQKY	0.9989	0.8492	0.0848	71.2	0.2489	26.45	1/888	1/7086
INDEL	Breast	ZNF10_Q160Lfs*16	HLA-A02:01	NMGETVFFL	0.9777	0.7142	0.1465	7.1	0.0682	3.04	1/888	1/7086
INDEL	Breast	ZNF10_Q160Lfs*16	HLA-A02:01	NMGETVFFLL	0.9707	0.6285	1.0524	61.8	0.7504	3.04	1/888	1/7086
INDEL	Breast	UTP18_G24Sfs*100	HLA-C16:01	RASPKACPF	0.6294	0.9735	0.4347	24.8	0.0613	34.3	1/888	1/7086
INDEL	Breast	FAM8A1_A384Cfs*11	HLA-A68:02	FSIASFFPC	0.8285	0.6945	1.7146	83	0.636	47.67	1/888	1/7086
INDEL	Breast	FAM8A1_A384Cfs*11	HLA-C16:01	SIASFFPCF	0.73	0.9844	0.3542	226.6	0.7405	47.67	1/888	1/7086
INDEL	Breast	FAM8A1_A384Cfs*11	HLA-B08:01	FPCFHHTAV	0.9164	0.8783	0.4698	110.7	0.196	47.67	1/888	1/7086
INDEL	Breast	FAM8A1_A384Cfs*11	HLA-C16:01	FSIASFFPCF	0.9836	0.9841	1.4654	226.2	0.7391	47.67	1/888	1/7086
INDEL	Breast	ZNF670_E254Vfs*27	HLA-C03:04	VAKPSVVPL	0.9987	0.9889	0.1112	14.6	0.0584	2.36	1/888	1/7086
INDEL	Breast	ZNF670_E254Vfs*27	HLA-A02:01	ILEKNPMNV	0.9769	0.7174	0.4061	216.7	1.7316	2.36	1/888	1/7086
INDEL	Breast	ZNF670_E254Vfs*27	HLA-C03:04	YVAKPSVVPL	0.999	0.9756	0.5328	44.4	0.1922	2.36	1/888	1/7086
INDEL	Breast	SCN4A_G1671delinsVLKHAFRSVCKW	HLA-A02:01	TLDLPMVPV	0.9917	0.8098	0.3822	46	0.5867	48.89	1/888	1/7086
INDEL	Breast	SCN4A_G1671delinsVLKHAFRSVCKW	HLA-A02:01	ITLDLPMVPV	0.9834	0.6915	1.0924	38.1	0.4972	48.89	1/888	1/7086
INDEL	Breast	SCN4A_G1671delinsVLKHAFRSVCKW	HLA-C15:02	ITLDLPMVPV	0.9991	0.7855	1.6274	335.5	0.3656	48.89	1/888	1/7086
INDEL	Breast	KAT2B_N798Kfs*9	HLA-A02:01	RVFTKLQRV	0.9726	0.5144	0.0979	221.2	1.7533	6.87	1/888	1/7086
INDEL	Breast	EXO1_E89Dfs*44	HLA-B57:01	LSISHMPW	0.9999	0.9376	0.7014	35.1	0.0935	4.71	1/888	1/7086
INDEL	Breast	TTI2_S96Lfs*9	HLA-B57:01	AAPLQGGGRW	0.9991	0.9828	0.5245	267.3	0.4684	2.79	1/888	1/7086
INDEL	Breast	TTI2_S96Lfs*9	HLA-B57:01	YAAPLQGGGRW	1	0.97	0.0441	203.5	0.3856	2.79	1/888	1/7086
INDEL	Breast	PTEN_D19Gfs*25	HLA-A23:01	RYQEGWIRLRL	0.9978	0.5717	0.1625	234.4	0.6343	12.29	1/888	1/7086
INDEL	Breast	HMBS_N322Vfs*23	HLA-B57:01	VTFHEGPSW	0.9991	0.9936	0.033	8.9	0.01	23.23	1/888	1/7086
INDEL	Breast	HMBS_N322Vfs*23	HLA-B57:01	RVTFHEGPSW	0.9991	0.9894	0.1855	10.5	0.0127	23.23	1/888	1/7086
INDEL	Breast	HMBS_N322Vfs*23	HLA-B57:01	ARVTFHEGPSW	0.9993	0.9658	1.3803	69.3	0.1789	23.23	1/888	1/7086
INDEL	Breast	HMBS_N322Vfs*23	HLA-A23:01	SWLPRTWASAW	0.9913	0.8212	0.2557	295.8	0.7328	23.23	1/888	1/7086
INDEL	Breast	PABPC4_V42_R49del	HLA-A30:01	SIRRSLGYA	0.988	0.8155	1.8135	19.6	0.0802	105.49	1/888	1/7086
INDEL	Breast	PABPC4_V42_R49del	HLA-C07:02	IRRSLGYAY	0.7995	0.7647	0.3352	428.9	0.2814	105.49	1/888	1/7086
INDEL	Breast	TELO2_L645Rfs*68	HLA-A30:01	RQRQPSLSL	0.9657	0.6679	0.0848	56.1	0.2896	25.16	1/888	1/7086
INDEL	Breast	TELO2_L645Rfs*68	HLA-B07:02	RPSGSPRVA	0.9987	0.8159	0.1285	66.1	0.2145	25.16	1/888	1/7086
INDEL	Breast	TELO2_L645Rfs*68	HLA-C17:01	SSSPSFSAL	0.6362	0.9448	0.1596	430.9	0.1213	25.16	1/888	1/7086
INDEL	Breast	TELO2_L645Rfs*68	HLA-B07:02	APADSTPWPA	0.9876	0.7864	0.7533	429.7	0.7627	25.16	1/888	1/7086
INDEL	Breast	MYBL2_L245Hfs*65	HLA-A30:01	RNRSPSVQI	0.9479	0.8091	1.3243	48.4	0.2532	193.3	1/888	1/7086
INDEL	Breast	MYBL2_L245Hfs*65	HLA-A30:01	NSRSVRTRK	0.9865	0.887	0.6556	33.7	0.1739	193.3	1/888	1/7086
INDEL	Breast	MYBL2_L245Hfs*65	HLA-A30:01	RTRKAPHQK	0.9994	0.8154	0.281	5.1	0.009	193.3	1/888	1/7086
INDEL	Breast	MYBL2_L245Hfs*65	HLA-C07:02	WRQLTSSSL	0.9688	0.9693	0.9549	151.3	0.0907	193.3	1/888	1/7086
INDEL	Breast	MYBL2_L245Hfs*65	HLA-A03:01	LLWVLASLK	0.9961	0.5408	0.4825	38.7	0.1394	193.3	1/888	1/7086
INDEL	Breast	MYBL2_L245Hfs*65	HLA-A30:01	RTRKAPHQKR	0.9875	0.801	1.211	95	0.476	193.3	1/888	1/7086
INDEL	Breast	MAP3K5_S1111Kfs*14	HLA-A02:02	TLKAETGAGL	0.9602	0.5166	0.9595	55.1	1.2145	6.01	1/888	1/7086
INDEL	Breast	NCOR2_N540Kfs*70	HLA-C02:02	AASPAQWLM	0.821	0.9853	0.2699	383.7	0.2483	35.35	1/888	1/7086
INDEL	Breast	NCOR2_N540Kfs*70	HLA-B07:02	RPTARRPSP	0.9866	0.5494	0.6674	225.5	0.5095	35.35	1/888	1/7086
INDEL	Breast	NCOR2_N540Kfs*70	HLA-B07:02	RPSPPSRAP	0.9927	0.7656	0.3787	225.5	0.5095	35.35	1/888	1/7086
INDEL	Breast	NCOR2_N540Kfs*70	HLA-B07:02	RPSPPSRAPS	0.9965	0.6102	0.5868	118.3	0.3348	35.35	1/888	1/7086
INDEL	Breast	GATA3_S426Ifs*81	HLA-B39:06	MHPPIQPVL	0.9995	0.8563	0.1227	83.9	0.03	1903.58	1/888	1/7086
INDEL	Breast	GATA3_S426Ifs*81	HLA-C07:02	MHPPIQPVL	0.8499	0.9848	0.1014	230.5	0.1514	1903.58	1/888	1/7086
INDEL	Breast	ABTB1_G383_L393del	HLA-A02:01	MLDEDTVVA	0.9896	0.6648	0.458	50.7	0.6374	16.66	1/888	1/7086
INDEL	Breast	ABTB1_G383_L393del	HLA-A02:01	MLDEDTVVARL	0.9989	0.7778	0.1527	103.1	1.0779	16.66	1/888	1/7086
INDEL	Breast	PRRC1_H356Sfs*31	HLA-C16:01	YTSHTSAF	0.9883	0.9776	0.5512	419.6	1.2148	22.42	1/888	1/7086
INDEL	Breast	COL12A1_N1861Tfs*47	HLA-B35:01	DPSTSTLTM	0.9857	0.8805	0.5454	53.1	0.2047	11.23	1/888	1/7086
INDEL	Breast	COL12A1_N1861Tfs*47	HLA-C16:01	LTMQREILV	0.9033	0.9783	0.6949	424.6	1.2262	11.23	1/888	1/7086
INDEL	Breast	COL12A1_N1861Tfs*47	HLA-B45:01	REILVSTSS	0.9232	0.7931	0.4753	135.5	0.1457	11.23	1/888	1/7086
INDEL	Breast	COL12A1_N1861Tfs*47	HLA-C16:01	ILVSTSSSM	0.6853	0.9882	1.156	309.8	0.965	11.23	1/888	1/7086
INDEL	Breast	COL12A1_N1861Tfs*47	HLA-C16:01	SSMHQQQVV	0.8487	0.979	0.6352	166.3	0.5626	11.23	1/888	1/7086
INDEL	Breast	COL12A1_N1861Tfs*47	HLA-A02:01	YQSPGIPIM	0.9479	0.6153	0.1609	198.7	1.6393	11.23	1/888	1/7086
INDEL	Breast	COL12A1_N1861Tfs*47	HLA-B35:01	YQSPGIPIM	0.9531	0.9242	0.7905	352.5	0.7023	11.23	1/888	1/7086
INDEL	Breast	COL12A1_N1861Tfs*47	HLA-C16:01	YQSPGIPIM	0.9943	0.9874	0.1112	49.9	0.1575	11.23	1/888	1/7086
INDEL	Breast	COL12A1_N1861Tfs*47	HLA-B35:01	SPGIPIMPF	0.9924	0.7067	0.433	115	0.3492	11.23	1/888	1/7086
INDEL	Breast	COL12A1_N1861Tfs*47	HLA-B35:01	MPFLGICSQ	0.9335	0.8871	0.5419	177.7	0.4574	11.23	1/888	1/7086
INDEL	Breast	NPEPL1_C404Pfs*59	HLA-C16:01	RAALQRVHL	0.9687	0.9795	0.3302	49.1	0.1534	9.85	1/888	1/7086
INDEL	Breast	NPEPL1_C404Pfs*59	HLA-A02:01	LLCWPLHRL	0.9612	0.6352	0.2396	146.4	1.3582	9.85	1/888	1/7086
INDEL	Breast	XPNPEP3_R76_H77del	HLA-C16:01	YALRKLMSL	0.9914	0.9826	0.0671	6.3	0.0088	10.69	1/888	1/7086
INDEL	Breast	CDH1_N144Tfs*71	HLA-A02:01	LLTFPTPLL	0.9669	0.6129	0.3624	68.7	0.8166	10.29	1/888	1/7086
INDEL	Breast	CDH1_N144Tfs*71	HLA-C03:03	FLPSAAQKM	0.9866	0.9775	0.4951	353.4	0.7941	10.29	1/888	1/7086
INDEL	Breast	CDH1_N144Tfs*71	HLA-C03:03	KARFSTASL	0.9662	0.9882	0.458	59.9	0.2461	10.29	1/888	1/7086
INDEL	Breast	CDH1_N144Tfs*71	HLA-C03:03	LAKELTHPL	0.9994	0.9971	0.1775	27.4	0.1203	10.29	1/888	1/7086
INDEL	Breast	CDH1_N144Tfs*71	HLA-C03:03	LTHPLLVSL	0.9996	0.9636	0.1435	40.5	0.1805	10.29	1/888	1/7086
INDEL	Breast	CDH1_N144Tfs*71	HLA-A02:01	SLAKELTHPL	0.961	0.807	1.014	26.2	0.3576	10.29	1/888	1/7086
INDEL	Breast	SGK223_S798Qfs*23	HLA-A02:01	KLFAPVPFPQA	0.9885	0.7316	0.1807	160.5	1.4403	24.65	1/888	1/7086
INDEL	Breast	KLF4_D399Afs*41	HLA-A31:01	HTCEPTQVR	0.9315	0.8949	0.3624	318.7	1.6206	97.04	1/888	1/7086
INDEL	Breast	KLF4_D399Afs*41	HLA-C03:04	LTTVTGTAV	0.5592	0.9805	1.2661	191.1	0.5471	97.04	1/888	1/7086
INDEL	Breast	KLF4_D399Afs*41	HLA-C03:04	TAVDGNSPA	0.9728	0.9788	0.9059	405.1	0.8666	97.04	1/888	1/7086
INDEL	Breast	KLF4_D399Afs*41	HLA-A31:01	HTCAAKPTQR	0.9716	0.6089	0.7554	113	0.8271	97.04	1/888	1/7086
INDEL	Breast	CDH1_I304Nfs*7	HLA-A31:01	IAYTNPQPR	0.9556	0.6271	0.0861	94.3	0.7224	8.26	1/888	1/7086
INDEL	Breast	CDH1_I304Nfs*7	HLA-A31:01	AIAYTNPQPR	0.9379	0.7809	0.7767	330	1.6515	8.26	1/888	1/7086
INDEL	Breast	CDH1_I304Nfs*7	HLA-A31:01	AAIAYTNPQPR	0.9695	0.8502	0.8024	370.1	1.76	8.26	1/888	1/7086
INDEL	Breast	ARHGAP24_P224Lfs*26	HLA-B08:01	VILMRSMKI	0.97	0.6448	1.3526	182	0.3224	1.16	1/888	1/7086
INDEL	Breast	CDH1_F602Qfs*18	HLA-C12:03	RTIFQNLEL	0.9819	0.9926	0.1025	101.6	0.4556	46.42	1/888	1/7086
INDEL	Breast	CDH1_F602Qfs*18	HLA-C12:03	SSVRGIQSL	0.9945	0.8982	0.3089	57.9	0.2657	46.42	1/888	1/7086
INDEL	Breast	CDH1_F602Qfs*18	HLA-C12:03	YSSVRGIQSL	0.9993	0.9124	0.7106	274.1	1.0197	46.42	1/888	1/7086
INDEL	Breast	KLHL26_G95Rfs*143	HLA-B44:03	AEGRVGPW	0.9994	0.9453	0.4232	456.4	0.4072	9.12	1/888	1/7086
INDEL	Breast	KLHL26_G95Rfs*143	HLA-C07:01	GRAGRGRVL	0.9821	0.5075	0.4426	392.5	0.1377	9.12	1/888	1/7086
INDEL	Breast	APPL2_Q71Tfs*9	HLA-C03:04	LAYEKTEL	1	0.9931	0.1498	295.7	0.7168	18.81	1/888	1/7086
INDEL	Breast	CCAR1_E331Dfs*40	HLA-C16:01	VTQFSFQSF	0.8424	0.95	0.4808	203.3	0.6717	3.52	1/888	1/7086
INDEL	Breast	CCAR1_E331Dfs*40	HLA-B50:01	GEFDVLFHVT	0.5658	0.7168	0.1383	175.7	0.1319	3.52	1/888	1/7086
INDEL	Breast	ARHGEF7_F325Sfs*52	HLA-B50:01	EEICSSRTV	0.5632	0.6052	0.5706	494.6	0.3447	2.93	1/888	1/7086
INDEL	Breast	ARHGEF7_F325Sfs*52	HLA-C16:01	TVFRRMHQV	0.7782	0.9746	1.3176	287.8	0.9114	2.93	1/888	1/7086
INDEL	Breast	ARHGEF7_F325Sfs*52	HLA-C16:01	SSAESRRLL	0.822	0.9814	0.4698	121.3	0.4132	2.93	1/888	1/7086
INDEL	Breast	ARHGEF7_F325Sfs*52	HLA-C16:01	SAESRRLLF	0.5774	0.9788	0.3413	161.8	0.549	2.93	1/888	1/7086
INDEL	Breast	ARHGEF7_F325Sfs*52	HLA-B50:01	LEEICSSRTV	0.8489	0.6498	1.9269	304.1	0.2201	2.93	1/888	1/7086
INDEL	Breast	CEP104_L899Wfs*23	HLA-B15:16	SAVAASGPW	0.9384	0.9533	0.9275	86.1	0.286	22.57	1/888	1/7086
INDEL	Breast	CEP104_L899Wfs*23	HLA-B15:16	SSAVAASGPW	0.9742	0.9399	1.3596	83.2	0.2754	22.57	1/888	1/7086
INDEL	Breast	CEP104_L899Wfs*23	HLA-B15:16	KSSAVAASGPW	0.9919	0.9294	0.8065	128.4	0.4648	22.57	1/888	1/7086
INDEL	Breast	CD81_A107Sfs*10	HLA-A02:02	ILFACEVST	0.9751	0.6652	1.004	65.1	1.3596	273.57	1/888	1/7086
INDEL	Breast	CDH1_T141Rfs*63	HLA-B08:01	LLRRETGL	0.9982	0.7968	1.6082	133.8	0.2397	7.77	1/888	1/7086
INDEL	Breast	CDH1_T141Rfs*63	HLA-B08:01	ELLRRETGL	0.9943	0.9628	0.2428	232.2	0.4063	7.77	1/888	1/7086
INDEL	Breast	CDH1_T141Rfs*63	HLA-C07:01	LRRETGLFL	0.9137	0.8358	0.4865	53.5	0.0163	7.77	1/888	1/7086
INDEL	Breast	CDH1_T141Rfs*63	HLA-C03:04	FLPSAAQKM	0.9866	0.9775	0.5264	353.4	0.7941	7.77	1/888	1/7086
INDEL	Breast	CDH1_T141Rfs*63	HLA-B08:01	QKMKKAHFL	0.8994	0.6294	1.0366	312.1	0.5167	7.77	1/888	1/7086
INDEL	Breast	CDH1_T141Rfs*63	HLA-C03:04	KARFSTASL	0.9662	0.9882	0.5231	59.9	0.2461	7.77	1/888	1/7086
INDEL	Breast	CDH1_T141Rfs*63	HLA-B08:01	LAKELTHPL	0.9761	0.8657	0.3152	105.1	0.1873	7.77	1/888	1/7086
INDEL	Breast	CDH1_T141Rfs*63	HLA-C03:04	LAKELTHPL	0.9994	0.9971	0.2089	27.4	0.1203	7.77	1/888	1/7086
INDEL	Breast	CDH1_T141Rfs*63	HLA-C03:04	LTHPLLVSL	0.9996	0.9636	0.1734	40.5	0.1805	7.77	1/888	1/7086
INDEL	Breast	CDH1_T141Rfs*63	HLA-A02:01	SLAKELTHPL	0.961	0.807	1.014	26.2	0.3576	7.77	1/888	1/7086
INDEL	Breast	FANCD2_E1109Gfs*64	HLA-B35:01	FPSKHSQF	0.9748	0.8229	0.4311	414.6	0.7822	2.33	2/888	2/7086
INDEL	Breast	FANCD2_E1109Gfs*64	HLA-B35:01	FPSKHSQF	0.9748	0.8229	0.4311	414.6	0.7822	2.33	2/888	2/7086
INDEL	Breast	FANCD2_E1109Gfs*64	HLA-B35:01	FPCQTIPL	0.9853	0.7427	0.879	298.1	0.6397	2.33	2/888	2/7086
INDEL	Breast	FANCD2_E1109Gfs*64	HLA-B35:01	FPCQTIPL	0.9853	0.7427	0.879	298.1	0.6397	2.33	2/888	2/7086
INDEL	Breast	FANCD2_E1109Gfs*64	HLA-C16:01	HSQFPVCSL	0.7862	0.9775	0.1566	41.4	0.1257	2.33	1/888	1/7086
INDEL	Breast	FANCD2_E1109Gfs*64	HLA-B35:01	LSHQTFDGY	0.9667	0.7799	1.1249	431.8	0.8024	2.33	2/888	2/7086
INDEL	Breast	FANCD2_E1109Gfs*64	HLA-B35:01	LSHQTFDGY	0.9667	0.7799	1.1249	431.8	0.8024	2.33	2/888	2/7086
INDEL	Breast	FANCD2_E1109Gfs*64	HLA-B35:01	IPLSGVAKW	0.9897	0.7806	0.0465	480.5	0.8595	2.33	2/888	2/7086
INDEL	Breast	FANCD2_E1109Gfs*64	HLA-B35:01	IPLSGVAKW	0.9897	0.7806	0.0465	480.5	0.8595	2.33	2/888	2/7086
INDEL	Breast	FANCD2_E1109Gfs*64	HLA-B35:01	FPVCSLSHQTF	0.9999	0.7735	0.3184	39.1	0.1517	2.33	2/888	2/7086
INDEL	Breast	FANCD2_E1109Gfs*64	HLA-B35:01	FPVCSLSHQTF	0.9999	0.7735	0.3184	39.1	0.1517	2.33	2/888	2/7086
INDEL	Breast	HDAC3_V244Gfs*72	HLA-C16:01	MSRASISL	0.9957	0.9766	0.7533	270.4	0.8656	41.08	1/888	1/7086
INDEL	Breast	HDAC3_V244Gfs*72	HLA-C16:01	RALCSSVEL	0.9941	0.9942	0.5706	18.7	0.0397	41.08	1/888	1/7086
INDEL	Breast	HDAC3_V244Gfs*72	HLA-C16:01	WAVIDWAAL	0.7576	0.9897	1.7953	162.2	0.5503	41.08	1/888	1/7086
INDEL	Breast	HDAC3_V244Gfs*72	HLA-B35:01	MSRASISLY	0.9784	0.8099	0.6556	145.2	0.3994	41.08	2/888	2/7086
INDEL	Breast	HDAC3_V244Gfs*72	HLA-B35:01	MSRASISLY	0.9784	0.8099	0.6556	145.2	0.3994	41.08	2/888	2/7086
INDEL	Breast	HDAC3_V244Gfs*72	HLA-B35:01	LPAAGHMRH	0.9593	0.9349	1.1277	176.9	0.4561	41.08	2/888	2/7086
INDEL	Breast	HDAC3_V244Gfs*72	HLA-B35:01	LPAAGHMRH	0.9593	0.9349	1.1277	176.9	0.4561	41.08	2/888	2/7086
INDEL	Breast	PIK3R1_I566_K567insIREIDKRMNSI	HLA-A30:01	RMNSIIREI	0.9622	0.8414	0.1514	214.4	1.0148	61.48	1/888	1/7086
INDEL	Breast	PIK3R1_I566_K567insIREIDKRMNSI	HLA-B15:03	RMNSIIREI	0.6882	0.9288	0.184	149.2	1.8463	61.48	1/888	1/7086
INDEL	Breast	PIK3R1_I566_K567insIREIDKRMNSI	HLA-C14:02	RMNSIIREI	0.5391	0.9456	0.2868	412.8	1.1458	61.48	1/888	1/7086
INDEL	Breast	IL1R1_K87Gfs*19	HLA-A32:01	KLWFVPAGF	0.9801	0.9964	0.033	7.5	0.0099	95.15	1/888	1/7086
INDEL	Breast	CEP68_G333Vfs*15	HLA-C03:04	VSWPCPAGL	0.9965	0.9921	0.5583	189.2	0.5434	2.88	1/888	1/7086
INDEL	Breast	ST6GAL2_R82Pfs*26	HLA-A68:01	DARQALPPR	0.9852	0.6892	0.0481	290.7	1.7008	1.64	1/888	1/7086
INDEL	Breast	PHF2_G684Sfs*157	HLA-B27:05	RRLCCPRL	0.9999	0.9041	1.5578	104.1	0.3478	11.78	1/888	1/7086
INDEL	Breast	PHF2_G684Sfs*157	HLA-B27:05	RRVGARQL	0.9999	0.6307	0.8859	380	1.0184	11.78	1/888	1/7086
INDEL	Breast	PHF2_G684Sfs*157	HLA-B27:05	IRRLCCPRL	0.9638	0.6916	1.1421	282.7	0.8139	11.78	1/888	1/7086
INDEL	Breast	PHF2_G684Sfs*157	HLA-B27:05	RRRVGARQL	0.9985	0.6332	0.645	127.6	0.4225	11.78	1/888	1/7086
INDEL	Breast	PHF2_G684Sfs*157	HLA-B27:05	RRVGARQLA	0.9977	0.5407	0.8149	160.7	0.5197	11.78	1/888	1/7086
INDEL	Breast	PHF2_G684Sfs*157	HLA-B27:05	RRLARWSTT	0.9983	0.5101	1.2592	66.2	0.2197	11.78	1/888	1/7086
INDEL	Breast	PHF2_G684Sfs*157	HLA-B27:05	ARWSTTPAA	0.9991	0.5016	0.3542	72.6	0.2415	11.78	1/888	1/7086
INDEL	Breast	PHF2_G684Sfs*157	HLA-B27:05	ARWLPMVPG	0.9955	0.5991	0.8991	204.3	0.6309	11.78	1/888	1/7086
INDEL	Breast	PHF2_G684Sfs*157	HLA-B27:05	GRMGVAVAR	0.9994	0.749	0.0904	37.4	0.0976	11.78	1/888	1/7086
INDEL	Breast	PHF2_G684Sfs*157	HLA-A02:05	RMGVAVARV	0.9765	0.6925	0.0658	306.3	1.7112	11.78	1/888	1/7086
INDEL	Breast	PHF2_G684Sfs*157	HLA-B27:05	RRLCCPRLSR	0.9999	0.7881	0.719	9.7	0.0092	11.78	1/888	1/7086
INDEL	Breast	PHF2_G684Sfs*157	HLA-B27:05	RRRVGARQLA	0.9964	0.5502	1.3629	281	0.81	11.78	1/888	1/7086
INDEL	Breast	PHF2_G684Sfs*157	HLA-B27:05	RRVGARQLAS	0.9989	0.6528	1.0069	363.6	0.9859	11.78	1/888	1/7086
INDEL	Breast	PHF2_G684Sfs*157	HLA-B27:05	ARWLPMVPGR	0.9999	0.6775	0.5637	27.3	0.0559	11.78	1/888	1/7086
INDEL	Breast	PHF2_G684Sfs*157	HLA-A02:05	MVPGRMGVAV	0.8831	0.6696	0.5982	146	0.9214	11.78	1/888	1/7086
INDEL	Breast	PHF2_G684Sfs*157	HLA-B27:05	GRMGVAVARV	0.9999	0.7623	0.0778	57	0.1867	11.78	1/888	1/7086
INDEL	Breast	PHF2_G684Sfs*157	HLA-B27:05	ARWLPMVPGRM	1	0.6227	0.4397	128	0.4238	11.78	1/888	1/7086
INDEL	Breast	ERBB2_P885_I886insMP	HLA-B42:01	MPIKWMAL	0.9983	0.8576	0.1566	6	0.0117	295.03	1/888	1/7086
INDEL	Breast	ERBB2_P885_I886insMP	HLA-C16:01	HADGGKVPM	0.9619	0.962	0.1527	211.9	0.6955	295.03	1/888	1/7086
INDEL	Breast	ERBB2_P885_I886insMP	HLA-B42:01	VPMPIKWMA	0.8174	0.8822	0.2227	61.9	0.2967	295.03	1/888	1/7086
INDEL	Breast	ERBB2_P885_I886insMP	HLA-B42:01	VPMPIKWMAL	0.9755	0.8663	0.033	3.9	0.0079	295.03	1/888	1/7086
INDEL	Breast	ERBB2_P885_I886insMP	HLA-B42:01	MPIKWMALESI	0.9744	0.8398	1.2269	131.1	0.538	295.03	1/888	1/7086
INDEL	Breast	ZXDB_Q326Afs*34	HLA-B42:01	VARQTAAL	0.9868	0.6329	1.4441	331	0.9511	15.04	1/888	1/7086
INDEL	Breast	ZXDB_Q326Afs*34	HLA-B42:01	AVARQTAAL	0.9618	0.7226	0.3577	108.7	0.4696	15.04	1/888	1/7086
INDEL	Breast	ZXDB_Q326Afs*34	HLA-C16:01	AVARQTAAL	0.8687	0.9852	0.3736	92.9	0.325	15.04	1/888	1/7086
INDEL	Breast	ZXDB_Q326Afs*34	HLA-B42:01	LAVARQTAAL	0.9964	0.8041	1.9978	257.7	0.8157	15.04	1/888	1/7086
INDEL	Breast	ZXDB_Q326Afs*34	HLA-C16:01	LAVARQTAAL	0.9803	0.9892	0.9357	391.2	1.1442	15.04	1/888	1/7086
INDEL	Breast	ZXDB_Q326Afs*34	HLA-B42:01	LPGRGLWQEL	0.9336	0.7986	0.6737	18.6	0.0811	15.04	1/888	1/7086
INDEL	Breast	KDM6A_Y126Tfs*54	HLA-B08:01	RMLPFYMVL	0.6036	0.6646	0.8884	490.2	0.7547	9.66	1/888	1/7086
INDEL	Breast	KDM6A_Y126Tfs*54	HLA-B53:01	LPFYMVLVW	0.9882	0.7393	0.262	11.1	0.0105	9.66	1/888	1/7086
INDEL	Breast	KDM6A_Y126Tfs*54	HLA-A74:01	MLIPAFVEPR	0.9732	0.6104	0.5245	204.4	0.0858	9.66	1/888	1/7086
INDEL	Breast	GATA3_R306Kfs*46	HLA-C03:04	LSDHHNHTL	0.9984	0.9909	0.1149	200.4	0.5643	2646.59	1/888	1/7086
INDEL	Breast	GATA3_R306Kfs*46	HLA-B53:01	HTLEEECQW	0.7589	0.6936	0.0948	403.1	0.402	2646.59	1/888	1/7086
INDEL	Breast	IRX3_G121Afs*69	HLA-A68:02	HPAFYPYAV	0.9083	0.5599	0.4737	102.7	0.7424	200.87	1/888	1/7086
INDEL	Breast	IRX3_G121Afs*69	HLA-B08:01	HPAFYPYAV	0.8831	0.8014	0.2557	451.2	0.7045	200.87	1/888	1/7086
INDEL	Breast	IRX3_G121Afs*69	HLA-C03:04	YAVPVRGPV	0.9943	0.9574	0.2636	8.3	0.0305	200.87	1/888	1/7086
INDEL	Breast	CDH1_N181Tfs*34	HLA-B27:05	ARFSTASLA	0.9991	0.8845	0.9642	233.7	0.708	26.47	1/888	1/7086
INDEL	Breast	CDH1_N181Tfs*34	HLA-B44:03	KELTHPLLV	0.8821	0.9801	0.1734	423	0.3865	26.47	1/888	1/7086
INDEL	Breast	CDH1_N181Tfs*34	HLA-B27:05	ARFSTASLAK	0.9998	0.9191	0.3152	52.4	0.1675	26.47	1/888	1/7086
INDEL	Breast	CDH1_N181Tfs*34	HLA-A02:01	SLAKELTHPL	0.961	0.807	1.014	26.2	0.3576	26.47	1/888	1/7086
INDEL	Breast	PPP2CA_K136Nfs*39	HLA-C07:02	FYDECLRNM	0.9925	0.9501	0.1196	227.1	0.1491	68.76	1/888	1/7086
INDEL	Breast	PPP2CA_K136Nfs*39	HLA-C04:01	FYDECLRNM	0.9997	0.7651	0.0835	309	0.0092	68.76	1/888	1/7086
INDEL	Breast	PPP2CA_K136Nfs*39	HLA-C07:02	LRNMEMQMF	0.8502	0.9632	0.6737	383.2	0.2526	68.76	1/888	1/7086
INDEL	Breast	PPP2CA_K136Nfs*39	HLA-A33:03	LSLPWWMGR	0.9642	0.9347	0.2213	35.1	0.1226	68.76	1/888	1/7086
INDEL	Breast	PPP2CA_K136Nfs*39	HLA-A02:01	WMGRSSVYM	0.8626	0.6797	1.9682	214.1	1.7186	68.76	1/888	1/7086
INDEL	Breast	PPP2CA_K136Nfs*39	HLA-A33:03	FLSLPWWMGR	0.9677	0.9457	0.6594	53.9	0.2004	68.76	1/888	1/7086
INDEL	Breast	PPP2CA_K136Nfs*39	HLA-A02:01	WMGRSSVYMV	0.9659	0.6773	1.9202	56.1	0.6915	68.76	1/888	1/7086
INDEL	Breast	PPP2CA_K136Nfs*39	HLA-A33:03	IFLSLPWWMGR	0.9409	0.8524	1.5432	300.6	0.8766	68.76	1/888	1/7086
INDEL	Breast	PPP2CA_K136Nfs*39	HLA-B35:01	LPWWMGRSSVY	0.9993	0.8461	0.3254	31.6	0.1252	68.76	1/888	1/7086
INDEL	Breast	OBSCN_S4998Pfs*14	HLA-B44:03	AESPSAAPAL	0.9731	0.9621	0.1401	306.9	0.3065	2.71	1/888	1/7086
INDEL	Breast	TP53_R209Kfs*6	HLA-B44:03	VEYLDDKHF	0.9871	0.8105	0.4167	356.1	0.3436	11.25	1/888	2/7086
INDEL	Breast	KIF1A_P768Qfs*59	HLA-C14:02	LQRPRDAAL	0.8005	0.9822	0.6488	274.7	0.8005	1.53	1/888	1/7086
INDEL	Breast	KIF1A_P768Qfs*59	HLA-C12:03	LQRPRDAAL	0.995	0.9883	0.5245	269	1.0057	1.53	1/888	1/7086
INDEL	Breast	KLHL9_P581Qfs*42	HLA-C04:01	VFDLQSHLV	0.9996	0.986	0.0031	290.1	0.0091	20.29	1/888	1/7086
INDEL	Breast	SLC44A2_F451Lfs*109	HLA-B07:02	RPAGLPAL	0.9998	0.6356	0.2197	9.6	0.0241	74.06	1/888	1/7086
INDEL	Breast	SLC44A2_F451Lfs*109	HLA-B07:02	VPHRLPGL	0.9995	0.7449	0.0697	496.5	0.8278	74.06	1/888	1/7086
INDEL	Breast	SLC44A2_F451Lfs*109	HLA-C07:02	IFNALHVLL	0.721	0.9534	0.2335	395.5	0.2607	74.06	1/888	1/7086
INDEL	Breast	SLC44A2_F451Lfs*109	HLA-B07:02	GPAQAGRPA	0.9991	0.7293	0.4753	23.1	0.0824	74.06	1/888	1/7086
INDEL	Breast	SLC44A2_F451Lfs*109	HLA-C07:02	GRPAGLPAL	0.8669	0.979	0.0948	451.9	0.2948	74.06	1/888	1/7086
INDEL	Breast	SLC44A2_F451Lfs*109	HLA-B07:02	RPAGLPALL	0.9997	0.6115	0.1383	10.1	0.0264	74.06	1/888	1/7086
INDEL	Breast	SLC44A2_F451Lfs*109	HLA-B35:01	VPHDLSQML	0.9763	0.775	0.0452	433.4	0.8043	74.06	1/888	1/7086
INDEL	Breast	SLC44A2_F451Lfs*109	HLA-B07:02	RPAGLPALLC	0.9935	0.5232	0.7726	291.3	0.6067	74.06	1/888	1/7086
INDEL	Breast	SLC44A2_F451Lfs*109	HLA-B07:02	GPAQAGRPAGL	1	0.6881	0.3806	58.5	0.1944	74.06	1/888	1/7086
INDEL	Breast	SLC44A2_F451Lfs*109	HLA-B07:02	RPAGLPALLCL	0.9998	0.5455	0.3639	126.2	0.3498	74.06	1/888	1/7086
INDEL	Breast	KMT2C_G1309Afs*22	HLA-C03:04	VIRKDSSAL	0.9612	0.9668	0.5779	411	0.8745	16.74	1/888	1/7086
INDEL	Breast	KMT2C_G1309Afs*22	HLA-C06:08	IRKDSSALF	0.6583	0.9924	0.9103	144.3	0.0515	16.74	1/888	1/7086
INDEL	Breast	KMT2C_G1309Afs*22	HLA-C03:04	SALFPSSYL	0.9995	0.9941	0.0495	18.5	0.0781	16.74	1/888	1/7086
INDEL	Breast	KMT2C_G1309Afs*22	HLA-C03:04	FPSSYLAEM	0.9947	0.9889	0.1915	43.6	0.1897	16.74	1/888	1/7086
INDEL	Breast	KMT2C_G1309Afs*22	HLA-C03:04	MAGVSSYQI	0.9704	0.9799	1.3381	357	0.7984	16.74	1/888	1/7086
INDEL	Breast	CUL5_E429Gfs*23	HLA-B08:01	SLKKCSWYL	0.9107	0.6138	1.1446	160.7	0.2851	10.12	1/888	1/7086
INDEL	Breast	MAP3K1_P1044Qfs*42	HLA-C12:03	LSQNFPQSL	0.9917	0.988	0.5019	79.5	0.3685	24.59	1/888	1/7086
INDEL	Breast	MAP3K1_P1044Qfs*42	HLA-C12:03	VTYTGQSHL	0.9972	0.9851	0.1994	55.5	0.2495	24.59	1/888	1/7086
INDEL	Breast	MAP3K1_P1044Qfs*42	HLA-C12:03	YTGQSHLDL	0.5157	0.9819	1.1617	376.6	1.2856	24.59	1/888	1/7086
INDEL	Breast	MAP3K1_P1044Qfs*42	HLA-A02:01	LLSQDPCPPV	0.9659	0.7116	0.6674	48.9	0.6173	24.59	1/888	1/7086
INDEL	Breast	MAP3K1_P1044Qfs*42	HLA-A02:01	HLDLPQVIQV	0.9952	0.8144	0.1641	70.5	0.8316	24.59	1/888	1/7086
INDEL	Breast	MAP3K1_P1044Qfs*42	HLA-A02:01	SLLSQDPCPPV	0.9789	0.8403	0.8444	38.2	0.4981	24.59	1/888	1/7086
INDEL	Breast	MLLT4_E323Gfs*24	HLA-B57:03	VSFTNLQGM	0.8823	0.9921	1.014	389.1	0.6576	3.71	1/888	1/7086
INDEL	Breast	GATA3_H423Tfs*52	HLA-A33:03	LTTPTPMTR	0.9608	0.541	0.1886	240.9	0.7449	1105.96	1/888	1/7086
INDEL	Breast	GATA3_H423Tfs*52	HLA-B57:03	TTPPAWSPPW	0.9203	0.9852	0.6333	80.3	0.1715	1105.96	1/888	1/7086
INDEL	Breast	GATA3_H423Tfs*52	HLA-A33:03	HMLTTPTPMTR	0.9677	0.5945	0.2499	453.3	1.1623	1105.96	1/888	1/7086
INDEL	Breast	GATA3_H423Tfs*52	HLA-B57:03	HTTPPAWSPPW	0.9112	0.9787	0.6233	91.3	0.1952	1105.96	1/888	1/7086
INDEL	Breast	MEN1_I85Yfs*32	HLA-B35:01	FPVADLSY	0.9978	0.8613	0.2025	9.3	0.033	8.2	1/888	1/7086
INDEL	Breast	MEN1_I85Yfs*32	HLA-B35:01	FPVADLSYH	0.9967	0.8018	0.3184	24.2	0.0972	8.2	1/888	1/7086
INDEL	Breast	PHF1_Y156Lfs*58	HLA-B53:01	QPTAELLLL	0.7326	0.6827	0.5264	316.9	0.3392	35.7	1/888	1/7086
INDEL	Breast	PHF1_Y156Lfs*58	HLA-B35:01	CPGHAGYEAF	0.9836	0.8711	0.8108	153.3	0.4148	35.7	1/888	1/7086
INDEL	Breast	PHF1_Y156Lfs*58	HLA-B53:01	CPGHAGYEAF	0.9326	0.5988	1.3034	256.3	0.2833	35.7	1/888	1/7086
INDEL	Breast	PHF1_Y156Lfs*58	HLA-B53:01	QPTAELLLLW	0.9538	0.8043	0.4295	25	0.0309	35.7	1/888	1/7086
INDEL	Breast	TRPS1_S654Ifs*19	HLA-B53:01	EANHLQGIGW	0.9419	0.6834	0.1014	423.5	0.4167	3.76	1/888	1/7086
INDEL	Breast	ZMYM3_K1218Sfs*36	HLA-B35:01	SPMWCGSPA	0.9243	0.8045	1.432	84.9	0.2846	4.63	1/888	1/7086
INDEL	Breast	OSCP1_V202Cfs*25	HLA-C12:03	FVLPCPGLF	0.6816	0.9934	0.4933	54.6	0.2452	22.15	1/888	1/7086
INDEL	Breast	OSCP1_V202Cfs*25	HLA-C12:03	FVLPCPGLFL	0.9971	0.9934	0.5868	315.6	1.1286	22.15	1/888	1/7086
INDEL	Breast	SAPCD1_Q4Rfs*58	HLA-C16:01	YSMARPGL	0.996	0.9464	0.1354	223.7	0.7316	1.86	1/888	1/7086
INDEL	Breast	SAPCD1_Q4Rfs*58	HLA-C03:04	MARPGLKTI	0.9952	0.9795	0.193	55.2	0.2304	1.86	1/888	1/7086
INDEL	Breast	SAPCD1_Q4Rfs*58	HLA-C16:01	MARPGLKTI	0.6989	0.9629	0.1641	49.7	0.1566	1.86	1/888	1/7086
INDEL	Breast	SAPCD1_Q4Rfs*58	HLA-B44:03	RENRMPCGRVW	0.9967	0.9736	0.0995	52.6	0.0585	1.86	1/888	1/7086
INDEL	Breast	CIZ1_K242Nfs*21	HLA-A02:01	ALQHLSLSL	0.9798	0.629	0.4113	82.6	0.9304	47.57	2/888	2/7086
INDEL	Breast	CIZ1_K242Nfs*21	HLA-A02:01	ALQHLSLSL	0.9798	0.629	0.4113	82.6	0.9304	47.57	2/888	2/7086
INDEL	Breast	CIZ1_K242Nfs*21	HLA-B44:03	KENALQHLSL	0.9859	0.9792	0.6429	335.3	0.3285	47.57	1/888	1/7086
INDEL	Breast	CIZ1_K242Nfs*21	HLA-A02:01	ALQHLSLSLV	0.983	0.5103	0.5583	91.2	0.9984	47.57	2/888	2/7086
INDEL	Breast	CIZ1_K242Nfs*21	HLA-A02:01	ALQHLSLSLV	0.983	0.5103	0.5583	91.2	0.9984	47.57	2/888	2/7086
INDEL	Breast	FDPS_E224_L225insSTLTLL	HLA-A02:06	YLNLIESTL	0.9854	0.5195	0.0948	148.6	1.4529	40.77	1/888	1/7086
INDEL	Breast	FDPS_E224_L225insSTLTLL	HLA-C03:04	YLNLIESTL	0.9871	0.9806	0.2122	72.8	0.2902	40.77	1/888	1/7086
INDEL	Breast	FDPS_E224_L225insSTLTLL	HLA-A02:06	NLIESTLTL	0.9812	0.6311	0.0452	40.2	0.511	40.77	1/888	1/7086
INDEL	Breast	FDPS_E224_L225insSTLTLL	HLA-C03:04	NLIESTLTL	0.9908	0.9873	0.1317	106.4	0.3775	40.77	1/888	1/7086
INDEL	Breast	FDPS_E224_L225insSTLTLL	HLA-C15:02	STLTLLLFL	0.9826	0.8405	0.3787	381.7	0.412	40.77	1/888	1/7086
INDEL	Breast	FDPS_E224_L225insSTLTLL	HLA-A02:06	NLIESTLTLL	0.9859	0.5987	0.5399	162.6	1.5613	40.77	1/888	1/7086
INDEL	Breast	KIAA2018_T651Ifs*81	HLA-C03:04	LSASNSTQI	0.9709	0.9906	1.3306	69.3	0.279	7.71	1/888	1/7086
INDEL	Breast	KIAA2018_T651Ifs*81	HLA-C15:02	LSASNSTQI	0.9983	0.7838	0.8515	193	0.2109	7.71	1/888	1/7086
INDEL	Breast	KIAA2018_T651Ifs*81	HLA-C03:04	SASNSTQIF	0.9954	0.9873	0.6594	142.5	0.4543	7.71	1/888	1/7086
INDEL	Breast	ZBTB43_N83Tfs*11	HLA-B35:01	NPRVFETFSY	0.9783	0.7694	0.6655	40.4	0.1566	15.45	1/888	1/7086
INDEL	Breast	USPL1_T306Kfs*18	HLA-B35:01	FAEIEKLEM	0.9948	0.9396	0.2054	145.4	0.3998	13.11	1/888	1/7086
INDEL	Breast	FCHO2_F290Lfs*24	HLA-A02:01	KMQNLWNVL	0.9559	0.5567	1.9682	198.5	1.6383	5.8	1/888	1/7086
INDEL	Breast	BTN3A1_V460Wfs*42	HLA-C16:01	SSWTMRLEI	0.9014	0.9518	0.7683	73.3	0.2555	18.76	1/888	1/7086
INDEL	Breast	BTN3A1_V460Wfs*42	HLA-C16:01	RLEISHSTM	0.9379	0.9804	1.516	372.8	1.0965	18.76	1/888	1/7086
INDEL	Breast	BTN3A1_V460Wfs*42	HLA-C16:01	ISHSTMLWM	0.5845	0.9761	0.8444	126.9	0.4339	18.76	1/888	1/7086
INDEL	Breast	BTN3A1_V460Wfs*42	HLA-A02:01	MLWMDRIFI	0.9894	0.6132	0.1168	9.8	0.1144	18.76	1/888	1/7086
INDEL	Breast	BTN3A1_V460Wfs*42	HLA-A02:01	ILSWTSPSL	0.9838	0.7645	0.251	32.4	0.4318	18.76	1/888	1/7086
INDEL	Breast	BTN3A1_V460Wfs*42	HLA-C16:01	ILSWTSPSL	0.9229	0.9923	1.3768	140.4	0.4806	18.76	1/888	1/7086
INDEL	Breast	BTN3A1_V460Wfs*42	HLA-C06:02	MRLEISHSTM	0.9451	0.9907	0.8087	371.6	0.1249	18.76	1/888	1/7086
INDEL	Breast	BTN3A1_V460Wfs*42	HLA-A02:01	MLWMDRIFIL	0.9943	0.5312	0.5454	8.8	0.0991	18.76	1/888	1/7086
INDEL	Breast	BTN3A1_V460Wfs*42	HLA-A02:01	FILSWTSPSL	0.9894	0.7987	0.2573	19.1	0.2585	18.76	1/888	1/7086
INDEL	Breast	BTN3A1_V460Wfs*42	HLA-C16:01	FILSWTSPSL	0.971	0.9895	1.9339	379	1.1116	18.76	1/888	1/7086
INDEL	Breast	LARP4_P313Tfs*32	HLA-A32:01	RSIVLCLSL	0.9683	0.9541	0.4659	136.8	0.2427	22.51	1/888	1/7086
INDEL	Breast	LARP4_P313Tfs*32	HLA-B58:01	RSIVLCLSL	0.9877	0.8277	0.5038	73.7	0.3838	22.51	2/888	2/7086
INDEL	Breast	LARP4_P313Tfs*32	HLA-B58:01	RSIVLCLSL	0.9877	0.8277	0.5038	73.7	0.3838	22.51	2/888	2/7086
INDEL	Breast	LARP4_P313Tfs*32	HLA-C03:02	RSIVLCLSL	0.9691	0.9688	0.8629	207.3	0.7864	22.51	1/888	1/7086
INDEL	Breast	METTL23_I48dup	HLA-C03:02	IILSDSSEL	0.9813	0.9683	1.276	204.3	0.779	43.78	1/888	1/7086
INDEL	Breast	KANK3_L627Cfs*43	HLA-B58:01	TTVCPTGTW	0.9966	0.9815	0.0427	21.5	0.1421	13.24	2/888	2/7086
INDEL	Breast	KANK3_L627Cfs*43	HLA-B58:01	TTVCPTGTW	0.9966	0.9815	0.0427	21.5	0.1421	13.24	2/888	2/7086
INDEL	Breast	KANK3_L627Cfs*43	HLA-B58:01	CTTVCPTGTW	0.9965	0.9948	0.5904	22.6	0.151	13.24	2/888	2/7086
INDEL	Breast	KANK3_L627Cfs*43	HLA-B58:01	CTTVCPTGTW	0.9965	0.9948	0.5904	22.6	0.151	13.24	2/888	2/7086
INDEL	Breast	KANK3_L627Cfs*43	HLA-A32:01	GTWPSQACSW	0.9588	0.9324	0.3974	316	0.5187	13.24	1/888	1/7086
INDEL	Breast	KANK3_L627Cfs*43	HLA-B58:01	GTWPSQACSW	0.9957	0.8726	0.276	10.2	0.0563	13.24	2/888	2/7086
INDEL	Breast	KANK3_L627Cfs*43	HLA-B58:01	GTWPSQACSW	0.9957	0.8726	0.276	10.2	0.0563	13.24	2/888	2/7086
INDEL	Breast	KANK3_L627Cfs*43	HLA-B58:01	ACTTVCPTGTW	0.9948	0.9932	0.9059	157	0.6519	13.24	2/888	2/7086
INDEL	Breast	KANK3_L627Cfs*43	HLA-B58:01	ACTTVCPTGTW	0.9948	0.9932	0.9059	157	0.6519	13.24	2/888	2/7086
INDEL	Breast	KANK3_L627Cfs*43	HLA-B58:01	TGTWPSQACSW	0.9906	0.8447	1.073	128.9	0.569	13.24	2/888	2/7086
INDEL	Breast	KANK3_L627Cfs*43	HLA-B58:01	TGTWPSQACSW	0.9906	0.8447	1.073	128.9	0.569	13.24	2/888	2/7086
INDEL	Breast	KANK3_L627Cfs*43	HLA-B58:01	RTEPATRPSCW	0.9982	0.7223	0.0396	132.3	0.5792	13.24	2/888	2/7086
INDEL	Breast	KANK3_L627Cfs*43	HLA-B58:01	RTEPATRPSCW	0.9982	0.7223	0.0396	132.3	0.5792	13.24	2/888	2/7086
INDEL	Breast	PAPD5_I494_V500del	HLA-A30:01	RIATYRDWISK	0.9925	0.8855	0.8271	139.5	0.6846	9.48	1/888	1/7086
INDEL	Breast	NIPA2_G34Afs*11	HLA-C16:01	FILKKKASF	0.5839	0.9822	0.4347	295.7	0.931	31.68	1/888	2/7086
INDEL	Breast	MUC6_L557_F558insITTSMGIAEGTASL	HLA-C15:05	IAEGTASLI	0.9852	0.9788	0.6058	416.9	0.2778	2.01	1/888	1/7086
INDEL	Breast	MUC6_L557_F558insITTSMGIAEGTASL	HLA-B35:01	TASLITTSM	0.9935	0.8406	0.241	32.6	0.1293	2.01	1/888	1/7086
INDEL	Breast	HIVEP3_P2115Rfs*73	HLA-B07:02	VPPAHPAL	0.9997	0.5813	0.276	267.4	0.574	6.35	1/888	1/7086
INDEL	Breast	HIVEP3_P2115Rfs*73	HLA-B07:02	RPSPEVPPA	0.9986	0.6323	0.2268	135.2	0.3656	6.35	1/888	1/7086
INDEL	Breast	HIVEP3_P2115Rfs*73	HLA-B07:02	VPPAHPALL	0.9975	0.5129	0.2253	217.2	0.4962	6.35	1/888	1/7086
INDEL	Breast	HIVEP3_P2115Rfs*73	HLA-C07:02	RRTSSATCL	0.7825	0.9285	0.6674	436.6	0.286	6.35	1/888	1/7086
INDEL	Breast	HIVEP3_P2115Rfs*73	HLA-B07:02	RPRLYLTSSSA	0.9998	0.5372	0.6038	24.1	0.0867	6.35	1/888	1/7086
INDEL	Breast	HIVEP3_P2115Rfs*73	HLA-B07:02	RPAPPRGRRPS	0.9998	0.6757	0.8024	312	0.6335	6.35	1/888	1/7086
INDEL	Breast	CCDC39_S922Ffs*16	HLA-B35:01	SSSLVGSPF	0.9274	0.7589	0.8538	289.8	0.6292	1.07	1/888	1/7086
INDEL	Breast	TP53_T118Dfs*31	HLA-B35:01	LPCPQQDVL	0.9764	0.8092	0.1272	320.3	0.6663	31.88	1/888	1/7086
INDEL	Breast	ASNA1_F118_E120dup	HLA-B35:01	LPDEFFEF	0.9914	0.939	0.3914	289	0.6282	220.86	1/888	1/7086
INDEL	Breast	ASNA1_F118_E120dup	HLA-B35:01	LPDEFFEFF	0.9975	0.9513	0.0226	27.4	0.1097	220.86	1/888	1/7086
INDEL	Breast	MAP3K1_T1145Nfs*6	HLA-B35:01	MPSSDNNSNF	0.9944	0.8989	0.193	24.2	0.0972	56.43	1/888	1/7086
INDEL	Breast	FZD8_A128Vfs*19	HLA-B15:03	RQYGFVRL	0.9622	0.8549	0.2913	48.1	0.8406	17.43	1/888	1/7086
INDEL	Breast	FZD8_A128Vfs*19	HLA-A74:01	LMRQYGFVR	0.9621	0.546	0.2856	364.7	0.1673	17.43	1/888	1/7086
INDEL	Breast	FZD8_A128Vfs*19	HLA-A74:01	RLARPHALR	0.9916	0.6808	0.0848	24.1	0.008	17.43	1/888	1/7086
INDEL	Breast	FZD8_A128Vfs*19	HLA-A74:01	RQYGFVRLAR	0.9961	0.5211	0.0919	111.2	0.037	17.43	1/888	1/7086
INDEL	Breast	FZD8_A128Vfs*19	HLA-A34:02	HALRPAARAR	0.6623	0.6919	1.671	389.2	0.7991	17.43	1/888	1/7086
INDEL	Breast	KPNA6_I479Mfs*26	HLA-A74:01	KMSFSRATR	0.9942	0.5668	0.2268	33.4	0.0088	38.1	1/888	1/7086
INDEL	Breast	KPNA6_I479Mfs*26	HLA-C03:02	STRRPSTSL	0.9392	0.9712	0.2151	403.6	1.2634	38.1	1/888	1/7086
INDEL	Breast	SWAP70_R224delinsPLLLW	HLA-C03:02	MMKKGHRPL	0.6023	0.97	1.4904	272.6	0.9647	41.61	1/888	1/7086
INDEL	Breast	SWAP70_R224delinsPLLLW	HLA-B58:01	KGHRPLLLW	0.9964	0.9551	0.4033	37.7	0.2338	41.61	1/888	1/7086
INDEL	Breast	SWAP70_R224delinsPLLLW	HLA-A74:01	LLWKNWTER	0.9827	0.8134	0.2526	469.9	0.2237	41.61	1/888	1/7086
INDEL	Breast	SWAP70_R224delinsPLLLW	HLA-A74:01	LLLWKNWTER	0.9511	0.7598	1.0266	321.9	0.1489	41.61	1/888	1/7086
INDEL	Breast	SWAP70_R224delinsPLLLW	HLA-B58:01	LLWKNWTERW	0.9931	0.9943	0.8859	182.4	0.723	41.61	1/888	1/7086
INDEL	Breast	SWAP70_R224_K225insMITPCCPLML	HLA-C03:02	MITPCCPLM	0.9224	0.9736	1.0601	404.4	1.2651	41.61	1/888	1/7086
INDEL	Breast	SWAP70_R224_K225insMITPCCPLML	HLA-B58:01	MLKNWTERW	0.9714	0.9895	0.0697	159.6	0.6588	41.61	1/888	1/7086
INDEL	Breast	SWAP70_R224_K225insMITPCCPLML	HLA-B58:01	LMLKNWTERW	0.9913	0.9892	1.0978	65.7	0.353	41.61	1/888	1/7086
INDEL	Breast	BRCA2_F3090_N3099delinsY	HLA-B58:01	KTGLAPYLL	0.9885	0.9485	0.7767	118.6	0.5366	2.51	1/888	1/7086
INDEL	Breast	PYCR1_A12Lfs*19	HLA-C03:02	FIGAGQLLL	0.8333	0.9752	1.073	271.5	0.9619	165.42	1/888	1/7086
INDEL	Breast	PYCR1_A12Lfs*19	HLA-B58:01	GAGQLLLPW	0.9942	0.9594	0.5924	17.8	0.1172	165.42	1/888	1/7086
INDEL	Breast	PYCR1_A12Lfs*19	HLA-B58:01	RASQQQASW	0.9975	0.9857	0.0084	5.5	0.0185	165.42	1/888	1/7086
INDEL	Breast	PYCR1_A12Lfs*19	HLA-B53:01	RASQQQASW	0.6968	0.5545	0.1014	490.3	0.46	165.42	1/888	1/7086
INDEL	Breast	PYCR1_A12Lfs*19	HLA-B58:01	IGAGQLLLPW	0.9989	0.9462	1.1142	19	0.1228	165.42	1/888	1/7086
INDEL	Breast	ELL_T377Sfs*42	HLA-B53:01	WPMSAMTW	0.9892	0.748	0.6594	24.1	0.0299	18.97	1/888	1/7086
INDEL	Breast	ELL_T377Sfs*42	HLA-C03:02	TTPWPMSAM	0.9912	0.9826	0.1886	293.3	1.018	18.97	1/888	1/7086
INDEL	Breast	ELL_T377Sfs*42	HLA-C03:02	SAMTWATAA	0.9069	0.9887	0.3806	69.4	0.3373	18.97	1/888	1/7086
INDEL	Breast	ELL_T377Sfs*42	HLA-B58:01	TPWPMSAMTW	0.9658	0.9741	0.4246	444	1.3214	18.97	1/888	1/7086
INDEL	Breast	ELL_T377Sfs*42	HLA-B53:01	TPWPMSAMTW	0.9801	0.7889	0.0979	15	0.0159	18.97	1/888	1/7086
INDEL	Breast	ELL_T377Sfs*42	HLA-B53:01	TTPWPMSAMTW	0.9717	0.892	1.6663	272.9	0.3003	18.97	1/888	1/7086
INDEL	Breast	MRC2_Q671Dfs*24	HLA-C16:01	HAVLPGLGL	0.8928	0.9891	0.0177	109.1	0.3755	18.7	1/888	1/7086
INDEL	Breast	MRC2_Q671Dfs*24	HLA-C16:01	LGLGHQTPV	0.7314	0.986	1.6226	425.3	1.2277	18.7	1/888	1/7086
INDEL	Breast	MRC2_Q671Dfs*24	HLA-C16:01	LGHQTPVLL	0.8615	0.9761	0.5328	117.5	0.3991	18.7	1/888	1/7086
INDEL	Breast	TIMM17B_V30_Q32dup	HLA-C16:01	GVFQVFQAI	0.7271	0.9707	1.7204	337.9	1.0272	62.47	1/888	1/7086
INDEL	Breast	AFTPH_E356Kfs*55	HLA-C16:01	KTEKNLTYL	0.7512	0.9821	0.4599	306.8	0.9579	17.24	1/888	1/7086
INDEL	Breast	AFTPH_E356Kfs*55	HLA-C16:01	LTYLLLNVL	0.8726	0.9665	0.7573	233.5	0.761	17.24	1/888	1/7086
INDEL	Breast	AFTPH_E356Kfs*55	HLA-A02:02	LLLNVLTYA	0.9884	0.5188	0.1855	7.7	0.1202	17.24	1/888	1/7086
INDEL	Breast	AFTPH_E356Kfs*55	HLA-C16:01	YAWILLKLL	0.9002	0.9622	0.5962	269.1	0.8622	17.24	1/888	1/7086
INDEL	Breast	AFTPH_E356Kfs*55	HLA-B15:03	LLISKAQTL	0.8628	0.7447	0.6429	155.4	1.8983	17.24	1/888	1/7086
INDEL	Breast	AFTPH_E356Kfs*55	HLA-C16:01	LLISKAQTL	0.9843	0.9718	0.2636	196.3	0.6514	17.24	1/888	1/7086
INDEL	Breast	CDH1_Y190Lfs*9	HLA-A74:03	KVFLQHHWPR	0.9972	0.9554	0.2684	41.9	0.0093	79.22	1/888	1/7086
INDEL	Breast	CDH1_Y190Lfs*9	HLA-B44:03	KEGKVFLQHHW	0.9995	0.9942	0.2089	128.5	0.1502	79.22	1/888	1/7086
INDEL	Breast	CTCF_N55Tfs*7	HLA-A25:01	EVVQDVTAV	0.9952	0.6816	0.0356	176.4	0.0144	31.36	1/888	1/7086
INDEL	Breast	CTCF_N55Tfs*7	HLA-C12:03	VVQDVTAVY	0.5294	0.9428	0.0356	70.7	0.3328	31.36	2/888	2/7086
INDEL	Breast	CTCF_N55Tfs*7	HLA-C12:03	VVQDVTAVY	0.5294	0.9428	0.0356	70.7	0.3328	31.36	2/888	2/7086
INDEL	Breast	CTCF_N55Tfs*7	HLA-A25:01	EVVQDVTAVY	0.9978	0.5983	0.0131	32.5	0.0074	31.36	1/888	1/7086
INDEL	Breast	CDH1_A289Tfs*6	HLA-C12:03	VTATDTRTM	0.9123	0.9739	0.5347	110.6	0.489	8.66	2/888	2/7086
INDEL	Breast	CDH1_A289Tfs*6	HLA-C12:03	VTATDTRTM	0.9123	0.9739	0.5347	110.6	0.489	8.66	2/888	2/7086
INDEL	Breast	CDH1_A289Tfs*6	HLA-C12:03	TATDTRTMM	0.849	0.9773	0.3398	132.8	0.5819	8.66	2/888	2/7086
INDEL	Breast	CDH1_A289Tfs*6	HLA-C12:03	TATDTRTMM	0.849	0.9773	0.3398	132.8	0.5819	8.66	2/888	2/7086
INDEL	Breast	CDH1_L71Sfs*12	HLA-B35:01	TPDSKWAQM	0.9827	0.6197	0.7456	378.6	0.7374	90.7	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B07:02	RPAPSQGL	0.9994	0.5808	0.259	40.1	0.1404	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B07:02	TPRQPLPA	0.9996	0.7616	0.6392	214.1	0.492	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B07:02	APASLAAV	0.9985	0.6131	0.5264	90.2	0.2745	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B07:02	RPRGLAAP	0.9996	0.7305	1.9339	98.4	0.2931	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B07:02	RPAPSQGLV	0.9949	0.5909	0.3514	22.7	0.0802	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B07:02	TPRQPLPAP	0.9947	0.8426	0.0465	205.7	0.4801	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B07:02	QPLPAPASL	0.999	0.6484	0.1872	39.7	0.1391	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B07:02	APASLAAVW	0.987	0.6356	0.2025	435.4	0.7682	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-A02:01	SLAAVWSCA	0.9589	0.7146	0.7081	197.8	1.6342	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-C03:03	LAAVWSCAV	0.8898	0.9929	0.9913	38.8	0.175	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-A02:01	AVWSCAVPA	0.8864	0.6111	0.8247	85.4	0.9534	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B07:02	SPSAGPAQA	0.9928	0.7155	0.5454	330.5	0.6561	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-C03:03	AVPDTPPPL	0.9909	0.9915	0.2727	262.2	0.6676	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B07:02	RPRGLAAPA	0.9997	0.7844	0.3974	4.3	0.0081	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-C07:02	TRTTMRRSL	0.8036	0.8634	0.4808	496	0.3265	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-C03:03	TTMRRSLTL	0.9959	0.9822	0.3028	74.3	0.2951	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B15:01	TMRRSLTLM	0.9616	0.8478	1.0601	51.3	0.2599	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-C07:02	MRRSLTLMV	0.7385	0.9742	1.0978	210	0.1371	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B07:02	RPAPSQGLVT	0.9892	0.5838	0.4153	132.4	0.3608	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B07:02	TPRQPLPAPA	0.9992	0.819	0.1994	26.5	0.0971	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B07:02	RQPLPAPASL	0.9775	0.7557	1.3034	16	0.053	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B15:01	RQPLPAPASL	0.9987	0.9231	0.8317	479.6	1.6514	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B07:02	LPAPASLAAV	0.9911	0.5658	0.1547	60.4	0.1984	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-A02:01	SLAAVWSCAV	0.9893	0.7549	0.3956	28.5	0.3852	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B07:02	VPASPSAGPA	0.992	0.6689	0.786	165.2	0.4152	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B07:02	SPSAGPAQAV	0.9957	0.739	0.4213	108.8	0.3155	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B07:02	RPRGLAAPAG	0.9969	0.7181	0.651	47.4	0.1662	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B07:02	WPKHGLSPGRL	0.9998	0.6535	0.9642	41.2	0.1451	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B07:02	LPTQPPPRVPA	0.9993	0.7038	0.4789	474.6	0.8049	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B07:02	RPRGLAAPAGL	1	0.7279	0.3427	4.4	0.0083	47.11	1/888	1/7086
INDEL	Breast	CEP170B_A1177Pfs*118	HLA-B07:02	APAGLVPGPPA	0.9998	0.673	0.5706	453.6	0.7852	47.11	1/888	1/7086
