Type	Tissue	Mutation	HLA	Peptide	Deep_bind	Deep_imm	MHCf_rank (%)	Net4_aff (nM)	Net4_rank (%)	TPM	Frequency in the tissue	Frequency in all samples
Fusion	Thyroid	PAX8--PPARG	HLA-B35:01	YPVVAEMTM	0.9976	0.9394	0.1915	3.6	0.0101	NA	1/110	1/4234
Fusion	Thyroid	LRP8--PAX8	HLA-C07:01	YRGHGGLNQL	0.9986	0.5922	0.4295	436.9	0.1495	NA	1/110	1/4234
Fusion	Thyroid	CCDC6--RET	HLA-A11:01	GTSHGITEDPK	0.9997	0.5796	1.3562	89.7	0.5251	NA	1/110	1/4234
Fusion	Thyroid	SCAF8--VWA8	HLA-B15:35	AAIKAIKVF	0.9968	0.922	0.1498	264.8	0.5504	NA	1/110	1/4234
Fusion	Thyroid	UST--CCDC6	HLA-C07:02	IRRTPPPSL	0.8331	0.9363	0.1369	166.5	0.1026	NA	1/110	1/4234
Fusion	Thyroid	SSBP2--NTRK1	HLA-C03:04	MPSPAGPAVL	0.9971	0.9915	0.1734	409	0.8719	NA	1/110	1/4234
Fusion	Thyroid	SSBP2--NTRK1	HLA-C03:04	MPSPAGPAV	0.9464	0.9885	0.0583	216.1	0.5913	NA	1/110	1/4234
Fusion	Thyroid	MAP3K4--SERINC1	HLA-A02:06	AVLVETTPL	0.9096	0.7854	0.6837	135.9	1.3581	NA	1/110	1/4234
Fusion	Thyroid	RET--NCOA4	HLA-B15:25	ILTSSRACNF	0.8935	0.8948	1.9269	287.7	1.3658	NA	1/110	1/4234
Fusion	Thyroid	RET--NCOA4	HLA-B15:25	LTSSRACNF	0.9529	0.9123	1.2529	284.8	1.3569	NA	1/110	1/4234
Fusion	Thyroid	TMEM178B--RBM28	HLA-B44:03	NEIQACNW	0.9996	0.9076	0.1547	346.4	0.3366	NA	1/110	1/4234
Fusion	Thyroid	NCOA4--RET	HLA-B44:03	LENSQEDPKW	0.9985	0.9714	0.451	362.6	0.3481	NA	1/110	1/4234
Fusion	Thyroid	PAX8--PPARG	HLA-A02:01	ALLSEMTMV	0.9976	0.5682	0.0187	7.4	0.0737	NA	2/110	2/4234
Fusion	Thyroid	CMTR1--ZFAND3	HLA-B07:02	SPPRAARLHI	0.9664	0.5673	0.9059	29.5	0.1067	NA	1/110	1/4234
Fusion	Thyroid	CMTR1--ZFAND3	HLA-B08:01	LLPAHRGGVL	0.9668	0.9127	1.9055	486.4	0.75	NA	1/110	1/4234
Fusion	Thyroid	CMTR1--ZFAND3	HLA-B08:01	KIFVRLCVL	0.9748	0.7114	0.7329	61.6	0.1098	NA	1/110	1/4234
Fusion	Thyroid	CMTR1--ZFAND3	HLA-B08:01	LPAHRGGVL	0.9906	0.8083	0.2183	171.1	0.3012	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-A03:01	IAAVWAAAAK	0.9524	0.8169	1.8843	425.4	1.0828	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-B38:01	MHQVEEDYLF	0.9922	0.9197	0.037	204.1	0.029	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	FAFCQVDASI	0.9945	0.9625	1.4692	75.9	0.3543	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	LTNPHPILEL	0.9996	0.9641	0.2636	452.9	1.4519	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-A03:01	AIAAVWAAAAK	0.9968	0.8553	0.6095	219.3	0.6875	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	SAFPEVRSLTL	0.9997	0.9839	0.1718	297	1.0805	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-A03:01	AAASGLGEK	0.9512	0.624	0.713	354	0.958	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-A03:01	AAVWAAAAK	0.9577	0.9266	0.7226	411.7	1.0602	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-A03:01	ITGFPWAFK	0.959	0.5495	0.1872	40.3	0.1459	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-B38:01	MHQVEEDYL	0.9946	0.9061	0.0214	400.1	0.0658	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	AATETVTTA	0.945	0.9762	0.5144	491.9	1.5321	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	ASIALALAL	0.9983	0.9689	0.3542	54.8	0.2459	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	CQVDASIAL	0.9936	0.9718	1.276	298.1	1.0833	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	CVHLTPKEF	0.5695	0.986	0.7767	420.2	1.3819	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	FGWYQKPIL	0.9327	0.9816	1.156	333.4	1.1736	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	FLTNPHPIL	0.9715	0.9834	0.259	254.5	0.9716	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	FSQLLESAF	0.9572	0.9876	0.5779	111.8	0.4931	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	IAAELKQWV	0.9664	0.9937	0.6949	420	1.3814	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	IAAVWAAAA	0.8661	0.9952	1.0069	201.7	0.8287	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	IALALALAV	0.9158	0.9916	0.5795	45.8	0.1973	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	IASNERSEI	0.925	0.9618	0.7881	190.7	0.7926	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	KVPGLPQYL	0.6576	0.9674	0.4548	190.6	0.7923	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	LACLRLLAF	0.9677	0.9846	0.388	422.9	1.3875	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	LAIAAVWAA	0.8437	0.9946	1.5528	279.3	1.034	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	LALAVLCDL	0.8001	0.9888	1.0366	327.5	1.1587	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	LAPGLPILL	0.9804	0.9888	0.3495	121.3	0.534	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	LLSQFFREL	0.9934	0.9825	0.4277	428.6	1.3991	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	LTLPRTEAA	0.9407	0.9881	0.8149	394.5	1.3271	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	LTRLAIAAV	0.9037	0.9873	1.0266	146.2	0.6331	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	LTSTTPLFL	0.7699	0.9775	0.3283	145.4	0.6303	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	MVSEQCHLL	0.9713	0.9747	0.5982	426.9	1.3956	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	RGIISGSEL	0.9063	0.9856	1.1142	347.4	1.2082	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	SAFPEVRSL	0.9982	0.9907	0.0062	7.7	0.0136	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	YAESRQLTL	0.997	0.961	0.0356	40.1	0.1728	NA	1/110	1/4234
Fusion	Thyroid	TG--THADA	HLA-C12:03	YQKPILESL	0.9999	0.965	0.1596	59.6	0.2761	NA	1/110	1/4234
Fusion	Thyroid	CCDC6--RET	HLA-B15:17	ASVTIEDPKW	0.9942	0.9759	0.2213	118.2	1.3857	NA	2/110	2/4234
Fusion	Thyroid	CCDC6--RET	HLA-B15:17	VTIEDPKWEF	0.9983	0.9741	0.0822	91.4	1.1697	NA	2/110	2/4234
Fusion	Thyroid	IFT74--CACNA2D3	HLA-B44:03	TERQAITLY	0.9984	0.9369	0.0794	127.1	0.1484	NA	1/110	1/4234
Fusion	Thyroid	BRAF--SND1	HLA-C07:01	FRGDGGTQL	0.9855	0.63	0.2165	101.5	0.0388	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-A02:01	ASLPGSLTNV	0.9197	0.8185	0.1898	250.2	1.9011	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-A02:01	FLHEDLTVKI	0.9924	0.6915	0.0762	25.1	0.3439	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-A02:01	FMGYSTKPQL	0.9396	0.6047	1.8708	87.4	0.9686	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-A02:01	KIGDFGLATV	0.9954	0.7493	0.0109	36.3	0.4783	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-A02:01	VLYELMTGQL	0.9878	0.6506	1.063	51.4	0.6445	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-A02:01	YAFGIVLYEL	0.9599	0.539	1.205	112.1	1.138	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-C02:02	YSFQSDVYAF	0.9787	0.9415	0.3837	372.1	0.2388	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-A02:01	FLHEDLTV	0.9926	0.8984	1.1421	70.6	0.8325	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-A02:01	ILWMAPEV	0.9889	0.7687	1.3915	108.7	1.1141	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-A02:01	ILASIELLA	0.9958	0.568	0.4548	46.6	0.5932	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-A02:01	ILWMAPEVI	0.9781	0.5403	0.5962	57	0.7	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-A02:01	KMLNVTAPT	0.9771	0.6277	0.5982	68.5	0.8146	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-A02:01	LLARSLPKI	0.9825	0.6329	0.0658	33.1	0.4409	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-A02:01	SILWMAPEV	0.9761	0.7772	0.2165	25.9	0.3533	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-A02:01	SLPGSLTNV	0.9841	0.8742	0.0187	19.1	0.2583	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-A02:01	WMAPEVIRM	0.9915	0.5761	0.3137	49.7	0.6262	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-A02:01	YLSPDLSKV	0.9992	0.5759	0.0002	5.3	0.0405	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-C02:02	LSATPPASL	0.9744	0.9888	0.3736	285	0.1646	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-C02:02	VTAPTPQQL	0.9464	0.9476	0.1227	299.7	0.1746	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-C02:02	WMAPEVIRM	0.7066	0.9869	1.3768	207.4	0.1156	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-C02:02	YSTKPQLAI	0.5871	0.8789	0.2604	253.2	0.1437	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-C07:01	SRWSGSHQF	0.9992	0.555	0.0031	224.1	0.0836	NA	1/110	1/4234
Fusion	Thyroid	SND1--BRAF	HLA-C07:01	VRSNCPKAM	0.9851	0.542	0.5982	384.3	0.1354	NA	1/110	1/4234
Fusion	Thyroid	CCDC6--RET	HLA-A32:01	TIFAHKPPI	0.8988	0.9064	1.9612	279.4	0.4691	NA	1/110	1/4234
Fusion	Thyroid	GTF2IRD1--ALK	HLA-C12:03	FSIVHDKSVY	0.9813	0.8224	0.3753	302.9	1.0954	NA	1/110	1/4234
Fusion	Thyroid	GTF2IRD1--ALK	HLA-C12:03	FSIVHDKSV	0.9789	0.9027	0.5019	48.9	0.2142	NA	1/110	1/4234
Fusion	Thyroid	SNTA1--TPO	HLA-A31:01	VVLEDSGRLPR	0.9804	0.7029	0.0979	294.1	1.5444	NA	1/110	1/4234
Fusion	Thyroid	ZNRF3--ITFG1	HLA-C12:03	LANSANPHI	0.8386	0.9866	0.8228	270.3	1.0091	NA	1/110	1/4234
Fusion	Thyroid	NCOR1--RHOU	HLA-C07:01	TRHQQRWCL	0.9971	0.6898	0.1527	175.7	0.0675	NA	1/110	1/4234
Fusion	Thyroid	DBN1--ZNF346	HLA-A02:01	RLKEQSIFV	0.9948	0.5218	0.033	38.7	0.5044	NA	1/110	1/4234
Fusion	Thyroid	VCL--FGFR2	HLA-B15:01	AAVSNLVREY	0.9997	0.855	0.5471	162.7	0.7804	NA	1/110	1/4234
Fusion	Thyroid	VCL--FGFR2	HLA-B15:01	AVSNLVREY	0.9995	0.8892	0.0154	154.1	0.7501	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-A31:01	ALQKSPGPQR	0.8989	0.8426	0.8271	294.5	1.5457	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-A31:01	ILASIELLAR	0.96	0.5542	1.0601	243.2	1.3785	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-A31:01	LARSLPKIHR	0.9184	0.6254	0.4825	170.1	1.0782	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-A31:01	RSASEPSLNR	0.985	0.503	0.5002	116.6	0.8458	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-A31:01	RSNCPKAMKR	0.993	0.5183	0.5886	21.8	0.1585	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-B38:01	HHLHIIETKF	0.9949	0.9416	0.0214	446.5	0.0746	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-B38:01	WHGDVAVKML	0.9554	0.9718	0.3199	267.4	0.0422	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-B40:01	WEIPDGQITV	0.9777	0.8233	0.0734	54.2	0.1529	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C03:04	YACASPKTPI	0.992	0.9591	0.9814	214.6	0.5888	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C03:04	YAFGIVLYEL	0.9994	0.9934	0.5399	47.7	0.2016	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C03:04	YSFQSDVYAF	0.9994	0.9782	0.6252	126.6	0.4211	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C12:03	YAFGIVLYEL	0.9973	0.9915	0.5279	32.6	0.1336	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C12:03	YSFQSDVYAF	0.9988	0.9653	0.4737	73.8	0.3459	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-A31:01	KALQKSPGPQR	0.9895	0.9204	0.7226	297.7	1.5562	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-A31:01	QAFKNEVGVLR	0.9926	0.5033	0.4548	380.3	1.7871	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-A31:01	RLMAECLKKKR	0.9868	0.6021	0.2778	140	0.9564	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-A31:01	RSLPKIHR	0.9965	0.5022	0.8004	103.9	0.7783	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C12:03	YAFGIVLY	0.991	0.9766	0.3199	118.5	0.5219	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C12:03	YSFQSDVY	0.91	0.9537	0.7267	415.2	1.3715	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-A31:01	GYGEFAAFK	0.8403	0.6505	0.8859	381.2	1.7895	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-A31:01	LQKSPGPQR	0.9415	0.7879	0.1609	189	1.1598	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-A31:01	LWMAPEVIR	0.9012	0.5257	1.1277	290.6	1.5327	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-A31:01	RNRMKTLGR	0.9179	0.5867	0.5213	72.1	0.5856	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-B38:01	MQDKNPYSF	0.7969	0.904	0.0356	149.9	0.0199	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-B38:01	WHGDVAVKM	0.9903	0.9735	0.051	161.7	0.022	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C03:04	FGIVLYELM	0.9928	0.985	1.7317	478.3	0.9805	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C03:04	HIIETKFEM	0.9997	0.9874	0.2089	211.4	0.5835	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C03:04	IARQTAQGM	0.9799	0.985	0.9472	239.3	0.631	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C03:04	LSATPPASL	0.9997	0.9912	0.3009	12.1	0.0432	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C03:04	MGYSTKPQL	0.999	0.976	0.5399	87.3	0.3321	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C03:04	SAMGSTTGL	0.9992	0.9861	0.1354	6.1	0.023	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C03:04	VTAPTPQQL	0.9996	0.9561	0.1112	64.3	0.2617	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C03:04	WMAPEVIRM	0.9979	0.9926	1.8911	116.5	0.3982	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C03:04	YSTKPQLAI	0.9847	0.9701	0.1886	22.2	0.0964	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C12:03	DVYAFGIVL	0.5089	0.9816	0.5058	370.5	1.2699	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C12:03	GGYGEFAAF	0.7833	0.9883	0.7554	370.5	1.2699	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C12:03	HIIETKFEM	0.9991	0.9881	0.2446	206.5	0.8437	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C12:03	IARQTAQGM	0.8001	0.9868	0.6117	82.4	0.3792	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C12:03	KTRHVNILL	0.7107	0.97	0.388	339.6	1.1884	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C12:03	LSATPPASL	0.997	0.9872	0.3974	48.2	0.2099	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C12:03	MGYSTKPQL	0.9957	0.9711	0.5924	82.3	0.379	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C12:03	QAFKNEVGV	0.9365	0.9672	1.0807	435.9	1.4151	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C12:03	SAMGSTTGL	0.9887	0.9922	0.1734	20.4	0.0719	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C12:03	SLYHHLHII	0.9116	0.9285	0.4563	268.9	1.0052	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C12:03	SSLYHHLHI	0.7975	0.9405	0.3514	269.5	1.0069	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C12:03	STKPQLAIV	0.982	0.9399	0.4951	281.7	1.0406	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C12:03	VTAPTPQQL	0.9929	0.9651	0.1285	66.5	0.3142	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C12:03	WMAPEVIRM	0.9983	0.9863	1.5935	109.5	0.4851	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C12:03	YLSPDLSKV	0.9574	0.9581	0.0671	197.4	0.815	NA	1/110	1/4234
Fusion	Thyroid	BCL2L11--BRAF	HLA-C12:03	YSTKPQLAI	0.9309	0.9201	0.2482	62.9	0.2967	NA	1/110	1/4234
Fusion	Thyroid	NTRK3--RBPMS	HLA-B18:11	DELTVPALY	0.856	0.9271	0.0201	35.1	0.0248	NA	1/110	1/4234
Fusion	Thyroid	NTRK3--RBPMS	HLA-C16:01	FGMKDELTV	0.8899	0.9864	0.8208	249.5	0.8068	NA	1/110	1/4234
Fusion	Thyroid	PAX8--PPARG	HLA-A02:01	ALLSEMTMV	0.9976	0.5682	0.0187	7.4	0.0737	NA	2/110	2/4234
Fusion	Thyroid	PAX8--PPARG	HLA-B35:01	QALLSEMTM	0.9389	0.8859	0.8515	198.2	0.489	NA	1/110	1/4234
Fusion	Thyroid	PAX8--PPARG	HLA-C03:04	QALLSEMTM	0.9987	0.9833	1.0239	91.2	0.342	NA	1/110	1/4234
Fusion	Thyroid	BRAF--FAM114A2	HLA-B15:01	RMARNTAHEW	0.9743	0.9538	1.6471	356.1	1.3879	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-A02:06	FLHEDLTVKI	0.9905	0.7894	0.0861	56.4	0.6865	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-A02:06	HIIETKFEMI	0.9735	0.6262	1.276	225.4	1.9688	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-A02:06	KIGDFGLATV	0.9938	0.827	0.0045	36.1	0.4607	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-A02:06	QLSGSILWMA	0.9343	0.5665	0.9814	202.7	1.8306	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-A02:06	YAFGIVLYEL	0.9709	0.6516	0.555	25.5	0.3268	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-B15:01	IGSGSFGTVY	0.9962	0.877	1.6663	158.6	0.7662	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-B15:01	KSRWSGSHQF	0.9993	0.8996	1.6274	203.2	0.9245	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-B15:01	RMQDKNPYSF	0.9998	0.909	0.1098	79.9	0.4289	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-B15:01	RQTAQGMDYL	0.9903	0.7976	1.7432	403.4	1.4956	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-B15:01	TQWCEGSSLY	0.9999	0.9538	0.7986	27.2	0.1251	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-B15:01	VIRMQDKNPY	0.9995	0.8226	1.584	124.7	0.6316	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-B15:01	YSFQSDVYAF	0.9984	0.7942	1.4148	25.8	0.1161	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-B15:01	HQFEQLSGSIL	0.9994	0.723	1.0978	478.5	1.6489	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-B15:01	RIGSGSFGTVY	0.9991	0.9085	0.4491	378.4	1.4405	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-B15:01	FQSDVYAF	0.9997	0.927	1.224	315.4	1.2817	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-A02:06	HIIETKFEM	0.9738	0.6626	0.4311	203.6	1.8362	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-A02:06	ILASIELLA	0.9942	0.6779	0.4808	176.6	1.6609	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-A02:06	ILWMAPEVI	0.9728	0.6827	0.8629	200.2	1.8159	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-A02:06	KMLNVTAPT	0.9699	0.767	1.0837	73.7	0.8662	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-A02:06	LLARSLPKI	0.9781	0.7424	0.0962	42	0.5328	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-A02:06	QILASIELL	0.9466	0.673	0.8723	113.8	1.2053	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-A02:06	SILWMAPEV	0.9812	0.8383	0.1596	17.9	0.2268	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-A02:06	TQWCEGSSL	0.7125	0.7647	1.3562	136.6	1.3626	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-A02:06	WMAPEVIRM	0.9889	0.7039	0.3398	59.5	0.7213	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-A02:06	YLSPDLSKV	0.9989	0.7183	0.0003	5.5	0.0408	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-A02:06	YSFQSDVYA	0.7694	0.5171	1.1472	188.3	1.7403	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-B15:01	ELMTGQLPY	0.9944	0.6982	0.585	84.6	0.453	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-B15:01	FQTEDFSLY	0.9995	0.9072	0.2039	29.2	0.135	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-B15:01	GGYGEFAAF	0.9867	0.971	0.7151	222.8	0.9904	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-B15:01	GQRIGSGSF	0.9995	0.859	0.0412	11.2	0.0229	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-B15:01	GSGSFGTVY	0.904	0.9285	0.7788	194	0.8922	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-B15:01	HLHIIETKF	0.9945	0.8949	0.0734	255.1	1.0956	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-B15:01	IIFMVGRGY	0.9861	0.7491	0.4232	160.9	0.7742	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-B15:01	IQAGGYGEF	0.9996	0.923	0.2165	16.3	0.0485	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-B15:01	MQDKNPYSF	0.9923	0.9123	0.0523	314.2	1.2781	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-B15:01	RQTAQGMDY	0.9969	0.7787	0.0734	46.9	0.234	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-B15:01	TQWCEGSSL	0.9949	0.958	1.8985	275.4	1.1609	NA	1/110	1/4234
Fusion	Thyroid	FAM114A2--BRAF	HLA-B15:01	WMAPEVIRM	0.9948	0.9665	1.418	148	0.7276	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-A31:01	FTRLRIQEER	0.859	0.5181	1.4904	132.8	0.9241	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-A31:01	SVWDSYAESR	0.9757	0.604	0.9226	66.5	0.5502	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-A32:01	KTVEFTRLRI	0.9904	0.8803	0.4646	423.2	0.6617	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-B15:01	YLFEKAEVNF	0.9997	0.9604	0.1915	80.3	0.4311	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-C03:03	FAFCQVDASI	0.9979	0.9816	1.0547	124.2	0.4159	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-C03:03	IALALALAVL	0.9978	0.993	1.2725	211.9	0.5842	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-C03:04	FAFCQVDASI	0.9979	0.9816	1.0863	124.2	0.4159	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-C03:04	IALALALAVL	0.9978	0.993	1.4692	211.9	0.5842	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-A32:01	RSRSYSPKFAF	0.9946	0.9704	1.073	247.1	0.422	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-A32:01	RTLACLRLLAF	0.9979	0.9706	0.3041	350.1	0.5644	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-A31:01	CLLSKSGWR	0.9432	0.5742	0.9173	142.9	0.9691	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-A31:01	ESRQLTLPR	0.8801	0.5556	0.2102	221.4	1.2925	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-A31:01	RLLAFLEGK	0.9475	0.6146	0.5886	166.3	1.0637	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-A32:01	ASIALALAL	0.9329	0.9596	0.8208	222.1	0.3849	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-A32:01	RSRSYSPKF	0.9846	0.9572	0.2604	171	0.3045	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-A32:01	RSYSPKFAF	0.997	0.96	0.037	7.8	0.0102	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-A32:01	RTLACLRLL	0.9936	0.9852	0.3089	60	0.1105	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-B15:01	ALALALAVL	0.8751	0.968	1.7953	404.2	1.4973	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-B15:01	ASIALALAL	0.9469	0.8287	1.314	323.2	1.3037	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-B15:01	CQVDASIAL	0.9965	0.7231	0.7702	147.7	0.7264	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-B15:01	EQCHLLSQF	0.9985	0.646	0.5637	205.3	0.9318	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-B15:01	HQVEEDYLF	0.9924	0.8086	0.0671	237.8	1.0404	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-B15:01	LACLRLLAF	0.9668	0.8792	0.7329	216.5	0.9699	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-B15:01	LVLSVWDSY	0.9475	0.8171	0.8361	256.3	1.0991	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-B15:01	RMVSEQCHL	0.9293	0.8836	1.0214	240.9	1.0506	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-B15:01	RSRSYSPKF	0.9789	0.9568	0.5741	167.2	0.7956	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-B15:01	RSYSPKFAF	0.9943	0.9376	0.1055	90.4	0.481	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-B15:01	SMHQVEEDY	0.9976	0.802	0.3089	137	0.6846	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-C03:03	ASIALALAL	0.9996	0.9878	0.267	21.5	0.0923	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-C03:03	CQVDASIAL	0.9954	0.9596	1.0418	151.1	0.4709	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-C03:03	IALALALAV	0.9633	0.991	0.5601	28	0.1228	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-C03:03	LALAVLCDL	0.9929	0.995	0.7967	123.5	0.4142	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-C03:03	LAPGLPILL	0.9996	0.9897	0.2636	141.2	0.4518	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-C03:03	RSYSPKFAF	0.8452	0.9927	0.3851	112.4	0.39	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-C03:03	YAESRQLTL	0.9998	0.9834	0.0177	13.7	0.0519	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-C03:04	ASIALALAL	0.9996	0.9878	0.2778	21.5	0.0923	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-C03:04	CQVDASIAL	0.9954	0.9596	1.0807	151.1	0.4709	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-C03:04	IALALALAV	0.9633	0.991	0.6137	28	0.1228	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-C03:04	LALAVLCDL	0.9929	0.995	0.8698	123.5	0.4142	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-C03:04	LAPGLPILL	0.9996	0.9897	0.2896	141.2	0.4518	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-C03:04	RSYSPKFAF	0.8452	0.9927	0.4213	112.4	0.39	NA	1/110	1/4234
Fusion	Thyroid	TRA2A--THADA	HLA-C03:04	YAESRQLTL	0.9998	0.9834	0.0214	13.7	0.0519	NA	1/110	1/4234
Fusion	Thyroid	CCDC6--RET	HLA-B58:01	ASVTIEDPKW	0.9987	0.9823	0.0618	10.4	0.0577	NA	1/110	2/4234
Fusion	Thyroid	CCDC6--RET	HLA-B58:01	VTIEDPKWEF	0.9978	0.9699	0.0697	157.6	0.6534	NA	1/110	2/4234
Fusion	Thyroid	CCDC6--RET	HLA-B58:01	KASVTIEDPKW	0.9998	0.9759	0.3235	18.9	0.1222	NA	1/110	2/4234
Fusion	Thyroid	CCDC6--RET	HLA-B58:01	VTIEDPKW	0.999	0.9769	0.0861	136.5	0.5915	NA	1/110	2/4234
Fusion	Thyroid	CCDC6--RET	HLA-B58:01	SVTIEDPKW	0.9667	0.9678	0.2165	66.4	0.356	NA	1/110	2/4234
Fusion	Thyroid	CCDC6--RET	HLA-B57:01	ASVTIEDPKW	0.9998	0.9935	0.0539	30.2	0.077	NA	1/110	1/4234
Fusion	Thyroid	CCDC6--RET	HLA-B57:01	KASVTIEDPKW	1	0.9894	0.2699	60.4	0.1595	NA	1/110	1/4234
Fusion	Thyroid	CCDC6--RET	HLA-B57:01	VTIEDPKW	0.9998	0.9921	0.0778	301.8	0.5092	NA	1/110	1/4234
Fusion	Thyroid	CCDC6--RET	HLA-B57:01	SVTIEDPKW	0.9842	0.9908	0.2183	231.6	0.423	NA	1/110	1/4234
Fusion	Thyroid	LLGL1--ALKBH5	HLA-B15:16	RTRLDAPRL	0.9317	0.9386	0.5328	137.8	0.4988	NA	1/110	1/4234
Fusion	Thyroid	LLGL1--ALKBH5	HLA-C14:02	GFDGARTRL	0.9271	0.9748	0.585	257.7	0.7547	NA	1/110	1/4234
Fusion	Thyroid	BRAF--SUGCT	HLA-B18:01	EEVLHNGLVM	0.8314	0.7774	0.678	351.1	0.225	NA	1/110	1/4234
Fusion	Thyroid	CCDC6--RET	HLA-B15:17	ASVTIEDPKW	0.9942	0.9759	0.2213	118.2	1.3857	NA	2/110	2/4234
Fusion	Thyroid	CCDC6--RET	HLA-B15:17	VTIEDPKWEF	0.9983	0.9741	0.0822	91.4	1.1697	NA	2/110	2/4234
Fusion	Thyroid	ZC3HAV1--BRAF	HLA-B35:01	FPQILASIEL	0.9946	0.7909	0.8004	36.2	0.1419	NA	1/110	1/4234
Fusion	Thyroid	ZC3HAV1--BRAF	HLA-B35:01	NPYSFQSDVY	0.9957	0.7534	0.0187	22.3	0.0915	NA	1/110	1/4234
Fusion	Thyroid	ZC3HAV1--BRAF	HLA-B35:01	YSFQSDVYAF	0.984	0.8237	1.1027	60.2	0.2236	NA	1/110	1/4234
Fusion	Thyroid	ZC3HAV1--BRAF	HLA-B35:01	YAFGIVLY	0.9942	0.8218	0.8585	96.9	0.3124	NA	1/110	1/4234
Fusion	Thyroid	ZC3HAV1--BRAF	HLA-B35:01	YSFQSDVY	0.9786	0.7747	1.9978	437.4	0.8093	NA	1/110	1/4234
Fusion	Thyroid	ZC3HAV1--BRAF	HLA-B35:01	ELMTGQLPY	0.8821	0.7317	1.3493	36.5	0.1429	NA	1/110	1/4234
Fusion	Thyroid	ZC3HAV1--BRAF	HLA-B35:01	FQTEDFSLY	0.8844	0.8627	0.9036	113.2	0.3458	NA	1/110	1/4234
Fusion	Thyroid	ZC3HAV1--BRAF	HLA-B35:01	HIIETKFEM	0.992	0.9062	0.4382	122.8	0.3633	NA	1/110	1/4234
Fusion	Thyroid	ZC3HAV1--BRAF	HLA-B35:01	MQDKNPYSF	0.929	0.9125	0.3302	167.1	0.4397	NA	1/110	1/4234
Fusion	Thyroid	ZC3HAV1--BRAF	HLA-C07:02	SRWSGSHQF	0.8831	0.9095	0.0037	129.9	0.0696	NA	1/110	1/4234
Fusion	Thyroid	ZC3HAV1--BRAF	HLA-C07:02	TRHVNILLF	0.8615	0.8499	0.1025	56.6	0.0269	NA	1/110	1/4234
Fusion	Thyroid	ZC3HAV1--BRAF	HLA-C07:02	VRSNCPKAM	0.768	0.8793	0.6616	380.8	0.251	NA	1/110	1/4234
