Type	Tissue	Mutation	HLA	Peptide	Deep_bind	Deep_imm	MHCf_rank (%)	Net4_aff (nM)	Net4_rank (%)	TPM	Frequency in the tissue	Frequency in all samples
Fusion	Breast	ACACA--PRKCA	HLA-C16:01	RSLWVTAL	0.9946	0.9878	0.6137	175.7	0.5896	NA	1/787	1/4234
Fusion	Breast	ACACA--PRKCA	HLA-A30:01	HLRKPHLLR	0.9923	0.9252	0.3028	62.9	0.3229	NA	1/787	1/4234
Fusion	Breast	ACACA--PRKCA	HLA-A30:01	QVQNPHLRK	0.9314	0.5763	0.3235	220	1.0378	NA	1/787	1/4234
Fusion	Breast	ACACA--PRKCA	HLA-C16:01	WTYPSRDEM	0.8875	0.9815	0.3461	24	0.0583	NA	1/787	1/4234
Fusion	Breast	ARSG--CDK12	HLA-A30:01	ASRPYTNKV	0.9932	0.7868	0.0904	26.9	0.1213	NA	1/787	1/4234
Fusion	Breast	ARSG--CDK12	HLA-A30:01	RASRPYTNK	0.9988	0.7832	0.2841	16.1	0.0555	NA	1/787	1/4234
Fusion	Breast	BPTF--PLXDC1	HLA-B18:01	MESRRRSIF	0.9394	0.9401	0.9275	318.9	0.2077	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A30:01	AAKAMDKHHK	0.9834	0.8623	0.9642	294.4	1.3255	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A30:01	KGKTTATTHK	0.9968	0.5904	1.2968	76.1	0.3841	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A30:01	MISSMIPIVK	0.9571	0.7	1.473	477.6	1.9728	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A68:02	MTSSQAMINI	0.99	0.6285	1.0655	16	0.1251	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A68:02	TAVTPVMDKV	0.9732	0.5678	1.224	93.9	0.6957	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A68:02	TVSLGVSSKV	0.989	0.6528	0.8378	51.2	0.4304	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-C16:01	LAMGKRLIPL	0.9948	0.9698	0.9711	98.3	0.3427	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A30:01	IVKTSSPIIHK	0.9952	0.754	0.3352	283.3	1.283	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A30:01	ISSMIPIVK	0.9795	0.733	0.6429	203.1	0.9698	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A30:01	KAMDKHHKA	0.9648	0.8523	0.7514	205.5	0.9793	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A30:01	KILEVTVSL	0.9032	0.9748	0.2039	435.8	1.836	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A30:01	KSRAHIASN	0.9883	0.8014	1.6274	10.9	0.0297	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A30:01	KTSSPIIHK	0.999	0.7307	0.0025	26.8	0.1205	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A30:01	KTTATTHKM	0.8485	0.6343	0.9971	385.7	1.6561	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A30:01	KTWNHQEAK	0.9949	0.8656	0.3427	30.9	0.1549	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A30:01	MTSQTMVNK	0.9791	0.6767	0.0671	153.1	0.7454	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A30:01	RAHIASNHI	0.9832	0.8443	1.3988	97.4	0.4871	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A30:01	RIKSRAHIA	0.9919	0.805	0.8698	15.6	0.0516	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A30:01	RTTAVTPVM	0.9427	0.8176	0.0861	76.3	0.385	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A30:01	SSQAMINIK	0.9563	0.6843	0.7106	53.5	0.2778	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A68:02	AVTPVMDKV	0.9747	0.5727	0.0888	204.9	1.1437	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A68:02	HSPMVVMRI	0.9208	0.5991	1.004	226.6	1.2094	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A68:02	MISSMIPIV	0.9948	0.7345	0.2925	61.7	0.5019	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-A68:02	QVIHSPMVV	0.9941	0.6078	0.251	111.4	0.7855	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-B18:01	MEIQAAKAM	0.9959	0.845	0.1383	19.1	0.0133	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-C05:01	VMDKVSQVI	0.9999	0.9268	0.0697	50.4	0.0291	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-C16:01	HLPMTSQTM	0.8601	0.9798	0.6154	437.1	1.2535	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-C16:01	KAHMMSSQI	0.7479	0.9783	0.8951	78.2	0.2736	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-C16:01	KILEVTVSL	0.9976	0.9908	0.0888	30.3	0.0835	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-C16:01	KTTATTHKM	0.6337	0.9338	0.7573	238.5	0.7754	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-C16:01	LGVSSKVIL	0.8733	0.9798	1.403	481.7	1.3419	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-C16:01	MGKRLIPLM	0.749	0.9651	1.0807	310	0.9655	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-C16:01	MINIKAHMM	0.9513	0.989	0.4718	370.3	1.0917	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-C16:01	QVIHSPMVV	0.93	0.9784	1.4399	445.9	1.2725	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-C16:01	RAHIASNHI	0.5989	0.978	0.68	121.1	0.4125	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-C16:01	RTTAVTPVM	0.9912	0.9804	0.0441	27.6	0.0712	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-C16:01	SSQIMISSM	0.9033	0.9693	0.4153	80.4	0.2814	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-C16:01	TATTHKMTV	0.6157	0.9753	0.458	316.6	0.9807	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-C16:01	TTHKMTVVM	0.7872	0.9781	0.2253	71.1	0.2469	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-C16:01	VIHSPMVVM	0.9639	0.9796	0.4096	95.3	0.3329	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-C16:01	VSQVIHSPM	0.9477	0.9717	0.5534	87.9	0.3074	NA	1/787	1/4234
Fusion	Breast	HELZ--TAF15	HLA-C16:01	VSSKVILPM	0.9137	0.9437	0.3352	43.7	0.134	NA	1/787	1/4234
Fusion	Breast	SUPT6H--PRKCA	HLA-C16:01	ASLGDSLLF	0.7571	0.9912	0.5619	326.7	1.0035	NA	1/787	1/4234
Fusion	Breast	TEX2--ACSF2	HLA-A30:01	ASATFRGAPK	0.9955	0.8688	0.4438	44.1	0.2311	NA	1/787	1/4234
Fusion	Breast	TEX2--ACSF2	HLA-A30:01	ATFRGAPKSI	0.8782	0.937	1.6818	408.9	1.7416	NA	1/787	1/4234
Fusion	Breast	TEX2--ACSF2	HLA-A30:01	SATFRGAPK	0.9815	0.7872	1.1249	120.3	0.5893	NA	1/787	1/4234
Fusion	Breast	TEX2--ACSF2	HLA-A68:02	EASATFRGA	0.9936	0.7557	0.3898	93.4	0.6931	NA	1/787	1/4234
Fusion	Breast	TEX2--ACSF2	HLA-A68:02	LTARLWASA	0.9594	0.7062	0.8004	44.2	0.3803	NA	1/787	1/4234
Fusion	Breast	TEX2--ACSF2	HLA-B18:01	NERPWSSSM	0.9727	0.7236	0.1418	140.2	0.093	NA	1/787	1/4234
Fusion	Breast	TUBD1--MYO18A	HLA-C16:01	IGQMMSTTL	0.8677	0.9575	0.9663	84	0.2937	NA	1/787	1/4234
Fusion	Breast	UBE2Z--MRPL45	HLA-A30:01	SILGIRRIK	0.9546	0.6058	0.2996	130.1	0.638	NA	1/787	1/4234
Fusion	Breast	THAP12--ANO1	HLA-A30:01	RLLPPGPTV	0.9181	0.9721	0.1793	304.3	1.3638	NA	1/787	1/4234
Fusion	Breast	NFIB--HEATR5B	HLA-B35:01	SPICLTQESSY	0.9984	0.5827	0.4113	135	0.3838	NA	1/787	1/4234
Fusion	Breast	NFIB--HEATR5B	HLA-C05:01	LTQESSYLL	0.9992	0.9151	0.8208	312.5	0.1346	NA	1/787	1/4234
Fusion	Breast	ENPP1--SEC63	HLA-B44:03	VENSSACRM	0.9285	0.8427	1.1117	435.9	0.394	NA	1/787	1/4234
Fusion	Breast	CDC27--ST7L	HLA-A02:01	VLQEPVQNV	0.9964	0.825	0.057	25.5	0.3491	NA	1/787	1/4234
Fusion	Breast	DTX4--CCDC102B	HLA-A02:01	KLDDSLNQI	0.9949	0.6209	0.0932	16	0.198	NA	1/787	1/4234
Fusion	Breast	INTS4--PTPRT	HLA-A02:01	KLLVAVPLM	0.9537	0.6128	0.2996	44.2	0.5672	NA	1/787	1/4234
Fusion	Breast	LAMA5--MYRFL	HLA-A02:01	RLFLPSAASV	0.9957	0.5339	0.1196	80.8	0.9145	NA	1/787	1/4234
Fusion	Breast	LAMA5--MYRFL	HLA-B07:02	ATPAPRHPAL	0.9973	0.856	0.8677	7.9	0.0151	NA	1/787	1/4234
Fusion	Breast	LAMA5--MYRFL	HLA-B07:02	TPAPRHPALF	0.9996	0.7751	0.1886	52.8	0.1811	NA	1/787	1/4234
Fusion	Breast	LAMA5--MYRFL	HLA-B07:02	QATPAPRHPAL	0.9999	0.801	0.9226	150	0.3894	NA	1/787	1/4234
Fusion	Breast	LAMA5--MYRFL	HLA-B07:02	RVLPSGDRLFL	0.8768	0.5159	1.8072	268.9	0.576	NA	1/787	1/4234
Fusion	Breast	LAMA5--MYRFL	HLA-B07:02	APRHPALF	0.9995	0.6851	0.5347	107.3	0.3124	NA	1/787	1/4234
Fusion	Breast	LAMA5--MYRFL	HLA-B07:02	TPAPRHPA	0.9997	0.7445	0.834	407	0.7402	NA	1/787	1/4234
Fusion	Breast	LAMA5--MYRFL	HLA-B07:02	APRHPALFC	0.9973	0.5071	0.5471	120.5	0.339	NA	1/787	1/4234
Fusion	Breast	LAMA5--MYRFL	HLA-B07:02	TPAPRHPAL	0.9999	0.8134	0.0031	4.6	0.0085	NA	1/787	1/4234
Fusion	Breast	UVRAG--INTS4	HLA-A02:01	SLLRDLQRL	0.9441	0.6608	0.1025	69.6	0.8241	NA	1/787	1/4234
Fusion	Breast	NEBL--TMEM26	HLA-B44:03	SELQSQALL	0.9917	0.9733	0.433	116.1	0.1336	NA	1/787	1/4234
Fusion	Breast	OBSCN--IGSF21	HLA-B44:03	LEFPGTVHLGY	0.9925	0.945	0.0734	384.1	0.3624	NA	1/787	1/4234
Fusion	Breast	DDX52--PSMD3	HLA-C07:02	LRSFLHARL	0.8937	0.9866	0.4001	230.5	0.1514	NA	1/787	1/4234
Fusion	Breast	RARA--NARS2	HLA-B07:02	TPSPARMDSF	0.9989	0.5519	0.0427	35.6	0.1228	NA	1/787	1/4234
Fusion	Breast	RARA--NARS2	HLA-B07:02	SPARMDSFCPI	0.9946	0.569	1.4776	143.4	0.3791	NA	1/787	1/4234
Fusion	Breast	RARA--NARS2	HLA-C07:02	ARMDSFCPI	0.8648	0.9381	0.9663	255.6	0.1678	NA	1/787	1/4234
Fusion	Breast	TAOK1--ACER3	HLA-A02:01	PLLDELPMI	0.8747	0.544	0.9152	182.6	1.5548	NA	1/787	1/4234
Fusion	Breast	APPBP2--HEATR6	HLA-C03:03	IAIDVNVRV	0.9979	0.9919	0.033	107.4	0.3796	NA	1/787	1/4234
Fusion	Breast	CABLES1--RBBP8	HLA-C07:01	SRSTWNKQL	0.9968	0.7051	0.241	282.7	0.1024	NA	1/787	1/4234
Fusion	Breast	CCDC47--GH1	HLA-A03:01	RSLKKPISQR	0.9165	0.5418	0.6212	225.3	0.7003	NA	1/787	1/4234
Fusion	Breast	CCDC47--GH1	HLA-A03:01	SLFRHPPTGR	0.9764	0.5199	0.0154	79.9	0.3009	NA	1/787	1/4234
Fusion	Breast	CCDC47--GH1	HLA-B35:01	FPYPGFLTTL	0.9969	0.9549	0.0121	43.5	0.1682	NA	1/787	1/4234
Fusion	Breast	CCDC47--GH1	HLA-B35:01	RAVPSQPFPY	0.9629	0.7303	1.6875	444.9	0.8184	NA	1/787	1/4234
Fusion	Breast	CCDC47--GH1	HLA-C03:03	FPYPGFLTTL	0.9986	0.9964	0.0154	49.2	0.2078	NA	1/787	1/4234
Fusion	Breast	CCDC47--GH1	HLA-B35:01	VPSQPFPY	0.9818	0.7527	0.5795	282.4	0.6196	NA	1/787	1/4234
Fusion	Breast	CCDC47--GH1	HLA-B35:01	FPYPGFLTT	0.9785	0.9025	0.0073	29.6	0.1183	NA	1/787	1/4234
Fusion	Breast	CCDC47--GH1	HLA-B35:01	QPFPYPGFL	0.9399	0.9815	0.6392	425.5	0.795	NA	1/787	1/4234
Fusion	Breast	CCDC47--GH1	HLA-B35:01	WPLTPTRSL	0.9949	0.8527	0.1566	138.4	0.3891	NA	1/787	1/4234
Fusion	Breast	CCDC47--GH1	HLA-C03:03	FPYPGFLTT	0.827	0.9945	0.1242	237.1	0.6274	NA	1/787	1/4234
Fusion	Breast	CCDC47--GH1	HLA-C07:01	CRTPRPPSV	0.9101	0.7384	0.4347	206.5	0.0783	NA	1/787	1/4234
Fusion	Breast	KDM2A--MAP3K3	HLA-C03:03	LAEAHLPLAM	0.9979	0.9858	0.9014	238.7	0.6301	NA	1/787	1/4234
Fusion	Breast	KDM2A--MAP3K3	HLA-C03:03	LAMFLSGSSTL	0.9992	0.9825	1.0655	179.6	0.5247	NA	1/787	1/4234
Fusion	Breast	KDM2A--MAP3K3	HLA-C03:03	MFLSGSSTL	0.9381	0.9879	0.6949	170.4	0.5059	NA	1/787	1/4234
Fusion	Breast	KDM2A--MAP3K3	HLA-C03:03	TLAEAHLPL	0.9872	0.9928	0.5583	60.5	0.248	NA	1/787	1/4234
Fusion	Breast	PILRB--MAGI2	HLA-B35:01	LPTCPSQEL	0.9932	0.9278	0.2039	89.6	0.2957	NA	1/787	1/4234
Fusion	Breast	PSMD3--C11orf80	HLA-B35:01	EVASAGSLF	0.8746	0.9156	0.2396	155.9	0.4198	NA	1/787	1/4234
Fusion	Breast	RBM4--MTMR4	HLA-B35:01	KPDPWMIFF	0.9772	0.784	0.1072	138.1	0.3886	NA	1/787	1/4234
Fusion	Breast	RHOD--PFDN4	HLA-C03:03	RAAEDVNVTF	0.9995	0.9909	0.057	499	1.0091	NA	1/787	1/4234
Fusion	Breast	TRRAP--PRKAR2B	HLA-A03:01	RIWIRSRCLK	0.9973	0.566	0.4789	13.3	0.0305	NA	1/787	1/4234
Fusion	Breast	TRRAP--PRKAR2B	HLA-A03:01	RLAKTSCCLR	0.9796	0.5772	1.0678	296.3	0.8438	NA	1/787	1/4234
Fusion	Breast	TRRAP--PRKAR2B	HLA-B35:01	QPVRAELMQY	0.9605	0.966	0.3386	285.3	0.6234	NA	1/787	1/4234
Fusion	Breast	TRRAP--PRKAR2B	HLA-B08:01	ILMKKKMM	0.9961	0.635	0.9642	46.5	0.0787	NA	1/787	1/4234
Fusion	Breast	TRRAP--PRKAR2B	HLA-B08:01	ELMQYVQKL	0.8282	0.7491	0.1807	316.6	0.523	NA	1/787	1/4234
Fusion	Breast	TRRAP--PRKAR2B	HLA-B08:01	IILMKKKMM	0.8839	0.5144	1.205	496.4	0.7624	NA	1/787	1/4234
Fusion	Breast	TRRAP--PRKAR2B	HLA-B08:01	RIWIRSRCL	0.9777	0.6721	0.5941	75.9	0.1317	NA	1/787	1/4234
Fusion	Breast	TRRAP--PRKAR2B	HLA-C03:03	MMQSPGLYI	0.6636	0.9879	1.4441	214.9	0.5894	NA	1/787	1/4234
Fusion	Breast	TRRAP--PRKAR2B	HLA-C03:03	YVQKLIILM	0.995	0.9691	0.511	457.3	0.9461	NA	1/787	1/4234
Fusion	Breast	TRRAP--PRKAR2B	HLA-C07:01	VRAELMQYV	0.9796	0.7408	0.0267	135.3	0.0535	NA	1/787	1/4234
Fusion	Breast	TUBD1--CDK12	HLA-C03:03	VALTQTKSL	0.9996	0.9785	0.1947	67.3	0.2723	NA	1/787	1/4234
Fusion	Breast	TUBD1--CDK12	HLA-C03:03	VQSADVVAL	0.9503	0.9851	1.014	372.5	0.8211	NA	1/787	1/4234
Fusion	Breast	CDC42BPB--UNC79	HLA-A02:01	YVAEFLEWVA	0.9892	0.7085	0.6233	23.5	0.3231	NA	1/787	1/4234
Fusion	Breast	CDC42BPB--UNC79	HLA-A02:01	FLEWVASKI	0.9726	0.7244	0.4825	133.6	1.2753	NA	1/787	1/4234
Fusion	Breast	CDC42BPB--UNC79	HLA-A02:01	YVAEFLEWV	0.9953	0.775	0.0096	3.5	0.0118	NA	1/787	1/4234
Fusion	Breast	DIXDC1--GAB2	HLA-A02:01	VLQEGFNEA	0.9952	0.769	0.3398	45.8	0.5849	NA	1/787	1/4234
Fusion	Breast	UBE2Q1--HPS1	HLA-C07:02	WRGAPPPWM	0.76	0.9874	1.2431	476.9	0.3122	NA	1/787	1/4234
Fusion	Breast	TXN2--CABP2	HLA-A02:01	TLAAGSWVPA	0.9709	0.5633	1.4863	90	0.9889	NA	1/787	1/4234
Fusion	Breast	TXN2--CABP2	HLA-B44:02	AERWTLKTSW	0.9994	0.7669	0.0601	9.5	0.0077	NA	1/787	1/4234
Fusion	Breast	TXN2--CABP2	HLA-C05:01	LTETGTATL	0.9999	0.9923	0.1886	149.4	0.0765	NA	1/787	1/4234
Fusion	Breast	CCDC106--CD37	HLA-A31:01	SARMEAGPR	0.9385	0.591	0.9036	221.2	1.2917	NA	1/787	1/4234
Fusion	Breast	INTS4--PLAUR	HLA-A31:01	CHLFPKPLPR	0.9371	0.717	1.7092	69	0.5666	NA	1/787	1/4234
Fusion	Breast	INTS4--PLAUR	HLA-A31:01	HLFPKPLPR	0.9973	0.7463	0.0062	12.4	0.0695	NA	1/787	1/4234
Fusion	Breast	INTS4--PLAUR	HLA-A31:01	RMHFLWLIR	0.9915	0.5563	0.259	4.8	0.0098	NA	1/787	1/4234
Fusion	Breast	ZNF154--KIR2DL1	HLA-A31:01	ALLTSLGVHR	0.9378	0.5998	0.0979	155.9	1.023	NA	1/787	1/4234
Fusion	Breast	ZNF154--KIR2DL1	HLA-A31:01	LLTSLGVHR	0.9121	0.5698	0.5195	156.6	1.026	NA	1/787	1/4234
Fusion	Breast	ZNF671--PRRG2	HLA-B44:02	AELTDSARGV	0.9021	0.6369	0.6674	182.8	0.2116	NA	1/787	1/4234
Fusion	Breast	ZNF671--PRRG2	HLA-B44:02	DEWMWPAWLW	0.9708	0.7576	0.8186	18.8	0.0116	NA	1/787	1/4234
Fusion	Breast	DUS1L--RPL13A	HLA-A02:05	MVVPAALKVV	0.9429	0.585	0.1317	281.1	1.596	NA	1/787	1/4234
Fusion	Breast	DUS1L--RPL13A	HLA-B58:01	RLAHEVGWKY	0.8766	0.9864	1.4776	330.3	1.1087	NA	1/787	1/4234
Fusion	Breast	DUS1L--RPL13A	HLA-A02:05	YLGRLAHEV	0.9977	0.7016	0.0166	22.1	0.1267	NA	1/787	1/4234
Fusion	Breast	DUS1L--RPL13A	HLA-B58:01	LAHEVGWKY	0.9506	0.9573	0.057	252.1	0.9192	NA	1/787	1/4234
Fusion	Breast	DUS1L--RPL13A	HLA-C07:01	KRMVVPAAL	0.9986	0.6224	0.1581	185.4	0.0707	NA	1/787	1/4234
Fusion	Breast	SCNN1G--COL27A1	HLA-C07:02	MHLGVSLLL	0.8998	0.9765	0.2573	293.5	0.1932	NA	1/787	1/4234
Fusion	Breast	TCF12--TEX9	HLA-B07:02	SVPATRSATL	0.9941	0.6424	1.3381	16.9	0.0575	NA	1/787	1/4234
Fusion	Breast	TCF12--TEX9	HLA-B07:02	RPPRLGGRI	0.994	0.5631	0.7573	131.3	0.3589	NA	1/787	1/4234
Fusion	Breast	TCF12--TEX9	HLA-B07:02	VPATRSATL	0.9998	0.6303	0.0734	6.2	0.0106	NA	1/787	1/4234
Fusion	Breast	TCF12--TEX9	HLA-C07:02	YTWTRPPRL	0.947	0.9714	0.5741	282.6	0.1858	NA	1/787	1/4234
Fusion	Breast	XPR1--KIAA1614	HLA-B07:02	PAPPRLPL	0.9976	0.6453	1.4441	73.5	0.2338	NA	1/787	1/4234
Fusion	Breast	XPR1--KIAA1614	HLA-B07:02	DPAPPRLPL	0.9991	0.6142	0.2009	39.7	0.1391	NA	1/787	1/4234
Fusion	Breast	XPR1--KIAA1614	HLA-B07:02	SPARNQREA	0.9975	0.6333	0.8833	301.8	0.6205	NA	1/787	1/4234
Fusion	Breast	XPR1--KIAA1614	HLA-B07:02	TPRASPSPC	0.997	0.5468	0.6191	35.5	0.1226	NA	1/787	1/4234
Fusion	Breast	ELL--SMIM7	HLA-C07:02	YRARQAVRLL	0.9776	0.9417	1.073	188	0.1204	NA	1/787	1/4234
Fusion	Breast	ELL--SMIM7	HLA-B07:02	RARQAVRLL	0.995	0.5036	0.4614	32.4	0.1148	NA	1/787	1/4234
Fusion	Breast	ELL--SMIM7	HLA-C07:02	YRARQAVRL	0.9589	0.9597	0.1898	51.6	0.0228	NA	1/787	1/4234
Fusion	Breast	MAGI3--RAP1A	HLA-C07:02	FVYEERPRF	0.9629	0.9439	0.4456	321.8	0.2129	NA	1/787	1/4234
Fusion	Breast	NAA25--TBX5	HLA-B07:02	MPALRPPASL	0.9998	0.5511	0.0745	12.2	0.0348	NA	1/787	1/4234
Fusion	Breast	NAA25--TBX5	HLA-A33:01	QTIPIRSPTWR	0.9376	0.7418	0.3787	265.2	0.5778	NA	1/787	1/4234
Fusion	Breast	NAA25--TBX5	HLA-B07:02	RPPASLCPA	0.9969	0.5114	0.6352	129.8	0.3561	NA	1/787	1/4234
Fusion	Breast	NAA25--TBX5	HLA-B07:02	SPTWRHHPV	0.9982	0.569	0.3698	9.4	0.0211	NA	1/787	1/4234
Fusion	Breast	NFIC--WDR18	HLA-B07:02	APHHGPALRL	0.9993	0.7384	0.057	74.4	0.2359	NA	1/787	1/4234
Fusion	Breast	NFIC--WDR18	HLA-B07:02	RPLQDSGAQA	0.9768	0.7639	0.2882	137.9	0.3702	NA	1/787	1/4234
Fusion	Breast	NFIC--WDR18	HLA-B07:02	SPRAPHHGPA	0.9984	0.7484	0.4789	16.2	0.0544	NA	1/787	1/4234
Fusion	Breast	NFIC--WDR18	HLA-B07:02	LPSVHRGQQPL	0.9987	0.5082	0.388	39.7	0.139	NA	1/787	1/4234
Fusion	Breast	NFIC--WDR18	HLA-B07:02	SPRAPHHGPAL	1	0.7676	0.0267	4.1	0.0079	NA	1/787	1/4234
Fusion	Breast	NFIC--WDR18	HLA-B07:02	APHHGPAL	0.9999	0.5963	0.0618	15	0.0482	NA	1/787	1/4234
Fusion	Breast	NFIC--WDR18	HLA-B07:02	RAPHHGPAL	0.9871	0.795	0.251	107.9	0.3136	NA	1/787	1/4234
Fusion	Breast	NFIC--WDR18	HLA-B07:02	SPRAPHHGP	0.9945	0.6038	0.4311	398.4	0.7312	NA	1/787	1/4234
Fusion	Breast	NFIC--WDR18	HLA-B07:02	SVHRGQQPL	0.9833	0.6123	0.8169	451.3	0.7832	NA	1/787	1/4234
Fusion	Breast	NFIC--WDR18	HLA-C07:02	HRGQQPLHL	0.9145	0.9416	0.1255	493.9	0.325	NA	1/787	1/4234
Fusion	Breast	PDE7A--COPS5	HLA-C07:02	FFHQECRLY	0.5873	0.8507	0.511	496.2	0.3267	NA	1/787	1/4234
Fusion	Breast	TRAPPC9--TSTA3	HLA-B07:02	RAHERQRPAL	0.9951	0.6219	0.9059	130.4	0.3573	NA	1/787	1/4234
Fusion	Breast	PRDM1--SLC22A16	HLA-B35:01	IPESPLFHM	0.9952	0.9324	0.4295	192.1	0.48	NA	1/787	1/4234
Fusion	Breast	ARFGEF3--TAAR6	HLA-C05:01	LSDQFSRCL	0.9999	0.8184	0.1196	191.1	0.0896	NA	1/787	1/4234
Fusion	Breast	PREP--DCBLD1	HLA-C05:01	ASDYQTVQV	0.9999	0.9783	0.0166	93.3	0.0484	NA	1/787	1/4234
Fusion	Breast	TTC6--FAM131C	HLA-C06:02	SRMSCVRPAL	0.9609	0.9849	0.9275	455	0.1481	NA	1/787	1/4234
Fusion	Breast	TTC6--FAM131C	HLA-A24:02	TWQPWPPRPLW	0.9993	0.8659	0.4659	438.2	0.6032	NA	1/787	1/4234
Fusion	Breast	TTC6--FAM131C	HLA-A30:01	ASRPPTATC	0.9226	0.7634	1.8266	136.5	0.6702	NA	1/787	1/4234
Fusion	Breast	TTC6--FAM131C	HLA-A30:01	QLRTSITAA	0.8786	0.8767	1.0924	185	0.8944	NA	1/787	1/4234
Fusion	Breast	TTC6--FAM131C	HLA-A30:01	RMSCVRPAL	0.9378	0.7998	0.2138	79.4	0.3976	NA	1/787	1/4234
Fusion	Breast	TTC6--FAM131C	HLA-A30:01	RTNRWISVG	0.9872	0.8457	1.6762	202.6	0.9677	NA	1/787	1/4234
Fusion	Breast	TTC6--FAM131C	HLA-A30:01	RTSITAASR	0.9913	0.8682	0.6233	318.6	1.4179	NA	1/787	1/4234
Fusion	Breast	TTC6--FAM131C	HLA-A30:01	SGRAGVPSR	0.9874	0.9137	1.1855	107.6	0.5344	NA	1/787	1/4234
Fusion	Breast	GSK3B--LSAMP	HLA-A02:01	IIKDCLFAA	0.9254	0.5037	0.7726	163.2	1.4543	NA	1/787	1/4234
Fusion	Breast	CRLS1--CES5A	HLA-A33:03	LMGPPWLPMR	0.9645	0.8752	0.9297	425	1.1112	NA	1/787	1/4234
Fusion	Breast	CRLS1--CES5A	HLA-B58:01	SIYLQILWSW	0.9809	0.9841	1.4654	241.1	0.8892	NA	1/787	1/4234
Fusion	Breast	CRLS1--CES5A	HLA-A33:03	SLMGPPWLPMR	0.9693	0.7636	0.4753	347.6	0.9695	NA	1/787	1/4234
Fusion	Breast	CRLS1--CES5A	HLA-A33:03	MGPPWLPMR	0.9425	0.8441	0.6079	335.7	0.9474	NA	1/787	1/4234
Fusion	Breast	CRLS1--CES5A	HLA-B58:01	LPMRTCWLW	0.9238	0.9816	0.5657	62.8	0.3407	NA	1/787	1/4234
Fusion	Breast	CRLS1--CES5A	HLA-C03:02	LMGPPWLPM	0.9673	0.9923	0.8515	96.8	0.4395	NA	1/787	1/4234
Fusion	Breast	CRLS1--CES5A	HLA-C03:02	RLAQPPSLM	0.8024	0.9846	0.7226	140.4	0.5765	NA	1/787	1/4234
Fusion	Breast	CRLS1--CES5A	HLA-C07:02	SRLAQPPSL	0.9853	0.9573	0.0686	127	0.0683	NA	1/787	1/4234
Fusion	Breast	GK5--MBNL1	HLA-A33:03	ITWNKAVAPGR	0.981	0.6805	0.6467	392.9	1.0536	NA	1/787	1/4234
Fusion	Breast	GRK2--POLD4	HLA-B07:02	APRRGGSGAG	0.9938	0.7678	1.1117	208.7	0.4845	NA	1/787	1/4234
Fusion	Breast	GRK2--POLD4	HLA-B07:02	APAPRRGGSGA	0.9999	0.8449	0.5002	464.3	0.7949	NA	1/787	1/4234
Fusion	Breast	GRK2--POLD4	HLA-B07:02	APRRGGSGAGA	0.9999	0.9047	0.5741	375.2	0.7063	NA	1/787	1/4234
Fusion	Breast	GRK2--POLD4	HLA-B07:02	APAPRRGGS	0.9912	0.5916	1.0314	346	0.6742	NA	1/787	1/4234
Fusion	Breast	GRK2--POLD4	HLA-B07:02	APRRGGSGA	0.999	0.8439	0.5058	16.2	0.0541	NA	1/787	1/4234
Fusion	Breast	INTS4--GAB2	HLA-B58:01	ASLRAPEPLF	0.9963	0.9722	1.1394	111.2	0.5112	NA	1/787	1/4234
Fusion	Breast	INTS4--GAB2	HLA-C03:02	HTAWTGVPA	0.7955	0.9692	1.8843	369	1.1896	NA	1/787	1/4234
Fusion	Breast	RPS6KB2--VSIR	HLA-A33:03	ATSRLQPWLR	0.9754	0.8467	0.0618	186.3	0.6129	NA	1/787	1/4234
Fusion	Breast	RPS6KB2--VSIR	HLA-B07:02	SPATSRLQPW	0.9659	0.748	1.2661	344.1	0.672	NA	1/787	1/4234
Fusion	Breast	RPS6KB2--VSIR	HLA-B07:02	SPATSRLQPWL	0.9979	0.8003	0.6408	43.7	0.1544	NA	1/787	1/4234
Fusion	Breast	RPS6KB2--VSIR	HLA-B58:01	LSPATSRLQPW	0.9985	0.9594	1.0705	96.1	0.4639	NA	1/787	1/4234
Fusion	Breast	RPS6KB2--VSIR	HLA-B58:01	ATSRLQPW	0.9962	0.9942	0.6038	184.4	0.7293	NA	1/787	1/4234
Fusion	Breast	RPS6KB2--VSIR	HLA-A33:03	TSRLQPWLR	0.9758	0.7652	0.0875	27	0.0972	NA	1/787	1/4234
Fusion	Breast	ATP2A3--FGF3	HLA-B35:01	LPEHYSAECEF	0.9983	0.8832	1.1706	159.2	0.4257	NA	1/787	1/4234
Fusion	Breast	LRP5--C11orf80	HLA-A02:01	LLLQEAFLVA	0.994	0.5959	0.8149	84.5	0.9461	NA	1/787	1/4234
Fusion	Breast	LRP5--C11orf80	HLA-A02:01	QLLLQEAFLV	0.9871	0.5146	1.6023	62.3	0.7562	NA	1/787	1/4234
Fusion	Breast	LRP5--C11orf80	HLA-A02:01	LLLQEAFLV	0.9968	0.6484	0.167	7.3	0.0725	NA	1/787	1/4234
Fusion	Breast	LRP5--C11orf80	HLA-A02:01	LLQEAFLVA	0.9946	0.6512	0.4789	94	1.0178	NA	1/787	1/4234
Fusion	Breast	RANGRF--LRP5	HLA-B50:01	KENQQTISRA	0.6475	0.5982	0.4213	485.6	0.3386	NA	1/787	1/4234
Fusion	Breast	PHB--LSM1	HLA-B08:01	ALYNEKHLVL	0.9243	0.6325	0.9735	459.4	0.7154	NA	1/787	1/4234
Fusion	Breast	PHB--LSM1	HLA-C07:01	LYNEKHLVL	0.9163	0.5942	0.0835	460.7	0.1575	NA	1/787	1/4234
Fusion	Breast	BRWD1--DYRK1A	HLA-C07:02	FRWLDRCPI	0.831	0.9723	1.4654	284.6	0.1872	NA	1/787	1/4234
Fusion	Breast	BRWD1--DYRK1A	HLA-C07:02	HFHSMLLAF	0.7508	0.9352	0.1609	205.6	0.1338	NA	1/787	1/4234
Fusion	Breast	BRWD1--DYRK1A	HLA-C07:02	HRHFHSMLL	0.9372	0.9467	0.0794	15.6	0.0082	NA	1/787	1/4234
Fusion	Breast	GRB7--ITGB3	HLA-A11:01	GTSKGPTSVPR	0.9956	0.7913	0.367	449.3	1.6525	NA	1/787	1/4234
Fusion	Breast	OFCC1--SSR1	HLA-B35:01	LVSSGTRSY	0.8064	0.8814	0.2102	37	0.1443	NA	1/787	1/4234
Fusion	Breast	HOOK3--IKBKB	HLA-A32:01	KQASALRYL	0.9811	0.7748	0.3427	399.8	0.6298	NA	1/787	1/4234
Fusion	Breast	RARA--POLDIP2	HLA-C15:02	YSTPSPATF	0.9273	0.7616	0.388	246.7	0.2681	NA	1/787	1/4234
Fusion	Breast	RPS15A--ARL6IP1	HLA-C07:02	SRQFGLQRL	0.9407	0.9539	0.4808	370.7	0.2448	NA	1/787	1/4234
Fusion	Breast	TFB2M--SMYD3	HLA-B44:03	GEKEFQKKAW	0.9995	0.9769	0.024	193.2	0.2083	NA	1/787	1/4234
Fusion	Breast	XXYLT1--ACAP2	HLA-B44:03	REMQPVYRAA	0.7675	0.9773	0.3075	365.6	0.3501	NA	1/787	1/4234
Fusion	Breast	XXYLT1--ACAP2	HLA-B44:03	REMQPVYRA	0.8763	0.9617	0.3851	262.4	0.2691	NA	1/787	1/4234
Fusion	Breast	NADSYN1--TRIM9	HLA-A02:02	NLASQLSQAL	0.9747	0.6178	0.6973	63.1	1.3305	NA	1/787	1/4234
Fusion	Breast	NADSYN1--TRIM9	HLA-A02:02	NLASQLSQA	0.963	0.5914	0.1977	49.9	1.1329	NA	1/787	1/4234
Fusion	Breast	NADSYN1--TRIM9	HLA-C02:02	LASQLSQAL	0.9633	0.9829	0.4277	381.8	0.2468	NA	1/787	1/4234
Fusion	Breast	TMEM135--AAMDC	HLA-A02:02	YMANLTSVKF	0.9913	0.5491	1.6929	80.1	1.5745	NA	1/787	1/4234
Fusion	Breast	TMEM135--AAMDC	HLA-C02:02	YMANLTSVKF	0.9963	0.9823	0.5128	338.9	0.2099	NA	1/787	1/4234
Fusion	Breast	TMEM135--AAMDC	HLA-A02:02	YMANLTSV	0.994	0.6522	0.5583	16.3	0.384	NA	1/787	1/4234
Fusion	Breast	TMEM135--AAMDC	HLA-C02:02	MANLTSVKF	0.7867	0.9853	0.1963	300.4	0.1752	NA	1/787	1/4234
Fusion	Breast	HOOK3--TM2D2	HLA-B35:01	LTWFGGQAY	0.9585	0.8929	0.2054	37.4	0.1457	NA	1/787	1/4234
Fusion	Breast	HSDL2--FRMD3	HLA-B57:01	RRTTLAFAMW	0.9893	0.9298	1.1617	16.8	0.0302	NA	1/787	1/4234
Fusion	Breast	HSDL2--FRMD3	HLA-B57:01	TTSATTTACW	0.9986	0.9791	0.2913	58.9	0.1562	NA	1/787	1/4234
Fusion	Breast	HSDL2--FRMD3	HLA-B57:01	LTTSATTTACW	0.9996	0.9878	0.3184	49.8	0.136	NA	1/787	1/4234
Fusion	Breast	HSDL2--FRMD3	HLA-B57:01	TTLAFAMW	0.9989	0.984	0.8813	135.1	0.2853	NA	1/787	1/4234
Fusion	Breast	HSDL2--FRMD3	HLA-B57:01	RTTLAFAMW	0.9994	0.9648	0.0315	6.9	0.0088	NA	1/787	1/4234
Fusion	Breast	HSDL2--FRMD3	HLA-B57:01	TSATTTACW	0.9968	0.988	0.0888	35.1	0.0934	NA	1/787	1/4234
Fusion	Breast	HSDL2--FRMD3	HLA-C07:02	RRTTLAFAM	0.9832	0.8746	0.3184	171.2	0.1067	NA	1/787	1/4234
Fusion	Breast	LAMTOR1--NSD3	HLA-C07:02	FRVKCLVKM	0.901	0.8655	0.4096	275.2	0.1806	NA	1/787	1/4234
Fusion	Breast	ESRP2--SLC7A6	HLA-A02:01	KLPCLLTFV	0.9942	0.6644	0.1227	6.2	0.0518	NA	1/787	1/4234
Fusion	Breast	FBXL20--CEP112	HLA-C03:04	FGFKATNHM	0.999	0.995	0.4845	16.1	0.0662	NA	1/787	1/4234
Fusion	Breast	GPR137C--FERMT2	HLA-A02:01	YLAEDVKLPQM	0.9993	0.5293	0.1625	39.7	0.5161	NA	1/787	1/4234
Fusion	Breast	GPR137C--FERMT2	HLA-A02:01	YLAEDVKL	0.9957	0.7243	0.2446	205.2	1.6735	NA	1/787	1/4234
Fusion	Breast	L2HGDH--LMBRD1	HLA-B15:01	ILVTGPFLGY	0.9986	0.8705	0.3235	121.5	0.6172	NA	1/787	1/4234
Fusion	Breast	L2HGDH--LMBRD1	HLA-B15:01	ISVLLPGHTY	0.9986	0.6896	0.2684	162.4	0.7794	NA	1/787	1/4234
Fusion	Breast	L2HGDH--LMBRD1	HLA-B15:01	VLLPGHTYSF	0.9996	0.9179	0.356	85	0.4548	NA	1/787	1/4234
Fusion	Breast	L2HGDH--LMBRD1	HLA-C03:04	FTSSGSSVLL	0.999	0.9733	0.6137	290	0.7084	NA	1/787	1/4234
Fusion	Breast	L2HGDH--LMBRD1	HLA-C03:04	YSFTSSGSSV	0.97	0.9875	0.7494	173.2	0.5116	NA	1/787	1/4234
Fusion	Breast	L2HGDH--LMBRD1	HLA-C03:04	YSFTSSGSSVL	0.9999	0.9815	0.4456	105.7	0.3758	NA	1/787	1/4234
Fusion	Breast	L2HGDH--LMBRD1	HLA-B15:01	LLPGHTYSF	0.9978	0.8953	0.0465	73	0.3916	NA	1/787	1/4234
Fusion	Breast	L2HGDH--LMBRD1	HLA-B15:01	LTILVTGPF	0.985	0.6494	1.0366	18.7	0.0718	NA	1/787	1/4234
Fusion	Breast	L2HGDH--LMBRD1	HLA-B15:01	LVTGPFLGY	0.9614	0.9664	0.2352	288.2	1.1998	NA	1/787	1/4234
Fusion	Breast	L2HGDH--LMBRD1	HLA-B15:01	SVLLPGHTY	0.9706	0.8856	0.0121	350.2	1.3734	NA	1/787	1/4234
Fusion	Breast	L2HGDH--LMBRD1	HLA-C03:04	FTSSGSSVL	0.9985	0.9823	0.4001	6	0.0223	NA	1/787	1/4234
Fusion	Breast	L2HGDH--LMBRD1	HLA-C03:04	TSSGSSVLL	0.9989	0.9696	0.6535	294.1	0.7144	NA	1/787	1/4234
Fusion	Breast	CMTM8--NR1D2	HLA-A02:01	FLIVAEIEV	0.9976	0.6655	0.1977	6.1	0.0516	NA	1/787	1/4234
Fusion	Breast	ZNF333--CYP4F22	HLA-B27:05	LRATGVVPSK	0.9996	0.7899	0.7399	118.7	0.3933	NA	1/787	1/4234
Fusion	Breast	ZNF18--TASP1	HLA-B35:01	MVSGVEFLW	0.8292	0.9764	1.4107	336.8	0.6849	NA	1/787	1/4234
Fusion	Breast	NF2--GRAP2	HLA-B38:01	QHLFFLQIL	0.9968	0.9888	0.3168	260.7	0.041	NA	1/787	1/4234
Fusion	Breast	OSTM1--SNX3	HLA-C12:03	ISRAAGTNL	0.9125	0.9673	0.3956	76.5	0.3569	NA	1/787	1/4234
Fusion	Breast	OSTM1--SNX3	HLA-C12:03	RAAGTNLPI	0.8288	0.9748	0.719	66.2	0.313	NA	1/787	1/4234
Fusion	Breast	WDR70--ADAMTS12	HLA-A02:05	NLTTGFFQL	0.9374	0.7624	0.2009	186.8	1.1427	NA	1/787	1/4234
Fusion	Breast	ABCA6--LIG3	HLA-B50:01	SEMQTAVA	0.9667	0.8218	0.2089	93.5	0.0682	NA	1/787	1/4234
Fusion	Breast	METRNL--PPP1R1B	HLA-C12:02	HAVPALRAL	0.9981	0.9849	0.057	41.1	0.0432	NA	1/787	1/4234
Fusion	Breast	ALG8--NARS2	HLA-B15:01	TLFRAFTQVF	0.9992	0.9044	1.2177	19.8	0.0773	NA	1/787	1/4234
Fusion	Breast	ALG8--NARS2	HLA-B27:05	FRAFTQVFTF	1	0.6704	0.5279	26.7	0.0542	NA	1/787	1/4234
Fusion	Breast	ALG8--NARS2	HLA-B15:01	LFRAFTQVF	0.9894	0.9316	0.9942	218.3	0.9757	NA	1/787	1/4234
Fusion	Breast	ALG8--NARS2	HLA-B15:01	RAFTQVFTF	0.9685	0.92	0.0226	49.2	0.2463	NA	1/787	1/4234
Fusion	Breast	ALG8--NARS2	HLA-B15:01	SLKTLFRAF	0.9932	0.7206	0.3302	18	0.0665	NA	1/787	1/4234
Fusion	Breast	ALG8--NARS2	HLA-C03:03	RAFTQVFTF	0.9291	0.9922	0.0495	59.5	0.2449	NA	1/787	1/4234
Fusion	Breast	GSTA4--NADSYN1	HLA-B15:01	FLQEDMGMTY	0.9998	0.9869	0.1025	42.1	0.2063	NA	1/787	1/4234
Fusion	Breast	GSTA4--NADSYN1	HLA-C03:03	SAFPFLQEDM	0.9988	0.9978	0.7329	261.1	0.6659	NA	1/787	1/4234
Fusion	Breast	GSTA4--NADSYN1	HLA-B15:01	LQEDMGMTY	0.9937	0.9671	0.2557	131.2	0.6602	NA	1/787	1/4234
Fusion	Breast	UAP1--LMX1A	HLA-C07:02	SRLPAIPRLF	0.9961	0.9152	0.1734	368.2	0.2433	NA	1/787	1/4234
Fusion	Breast	UAP1--LMX1A	HLA-C07:02	SRLPAIPRL	0.858	0.928	0.0177	107.9	0.0585	NA	1/787	1/4234
Fusion	Breast	KLHL26--KXD1	HLA-C06:02	FRYPRGIL	0.9475	0.9931	0.2543	82.7	0.0285	NA	1/787	1/4234
Fusion	Breast	KLHL26--KXD1	HLA-C07:01	FRYPRGIL	0.999	0.6217	0.3028	97.1	0.0369	NA	1/787	1/4234
Fusion	Breast	PDGFA--NT5C3A	HLA-B58:01	RSVKIITDF	0.9936	0.7674	0.0717	21.8	0.1446	NA	1/787	1/4234
Fusion	Breast	SDF2--RPTOR	HLA-B58:01	CCLSFVPECW	0.9829	0.9943	0.8468	364.8	1.1711	NA	1/787	1/4234
Fusion	Breast	SDF2--RPTOR	HLA-B58:01	LSFVPECW	0.9985	0.9859	0.2287	48.5	0.2801	NA	1/787	1/4234
Fusion	Breast	SDF2--RPTOR	HLA-B58:01	CLSFVPECW	0.9072	0.9912	0.704	106.8	0.4965	NA	1/787	1/4234
Fusion	Breast	THSD4--THAP10	HLA-B08:01	ELWSRTSSL	0.9984	0.9643	0.0226	23.8	0.0404	NA	1/787	1/4234
Fusion	Breast	THSD4--THAP10	HLA-B57:03	ATTQTEELW	0.9346	0.9967	0.1242	29.2	0.0529	NA	1/787	1/4234
Fusion	Breast	THSD4--THAP10	HLA-B57:03	RSVGIQAKV	0.9825	0.9862	0.259	390	0.6587	NA	1/787	1/4234
Fusion	Breast	THSD4--THAP10	HLA-B57:03	RTSSLFDIY	0.9159	0.9822	0.0697	429.4	0.7103	NA	1/787	1/4234
Fusion	Breast	APH1A--RGS4	HLA-B57:01	RVIILVAGGW	0.9995	0.9934	0.3851	93.7	0.2222	NA	1/787	1/4234
Fusion	Breast	APH1A--RGS4	HLA-B57:01	RGRGRQRSW	0.9851	0.9597	1.182	394.3	0.6259	NA	1/787	1/4234
Fusion	Breast	APH1A--RGS4	HLA-B57:01	RSWYCRAVV	0.8184	0.9519	1.8843	453.2	0.6939	NA	1/787	1/4234
Fusion	Breast	DCAF6--MPZL1	HLA-A02:01	YLVTAGVSAL	0.9847	0.5228	0.3806	68.2	0.8117	NA	1/787	1/4234
Fusion	Breast	DCAF6--MPZL1	HLA-A02:01	YLVTAGVSA	0.9558	0.5406	0.2089	110.5	1.1267	NA	1/787	1/4234
Fusion	Breast	DCAF6--MPZL1	HLA-C07:02	SRYLVTAGV	0.7752	0.949	0.4367	486.6	0.3196	NA	1/787	1/4234
Fusion	Breast	NOS1AP--MROH9	HLA-B57:01	KSKKKLLNNF	0.9989	0.9626	0.6058	205	0.3874	NA	1/787	1/4234
Fusion	Breast	RGL3--ECSIT	HLA-A02:01	ALSSPCAWRV	0.9445	0.6533	0.5312	71.3	0.8381	NA	1/787	1/4234
Fusion	Breast	ERBB4--SLC25A10	HLA-B07:02	SPLPREGVAGL	0.9999	0.5691	0.1014	98.4	0.2931	NA	1/787	1/4234
Fusion	Breast	ERBB4--SLC25A10	HLA-B07:02	APGSAAQL	0.9983	0.583	0.5296	456.4	0.7878	NA	1/787	1/4234
Fusion	Breast	ERBB4--SLC25A10	HLA-B07:02	RPCAGWPV	0.9977	0.7911	1.2465	314.3	0.6365	NA	1/787	1/4234
Fusion	Breast	ERBB4--SLC25A10	HLA-B07:02	LPREGVAGL	0.9997	0.5005	0.0131	9.3	0.02	NA	1/787	1/4234
Fusion	Breast	ERBB4--SLC25A10	HLA-B07:02	SPLPREGVA	0.9967	0.5754	0.2942	129.9	0.3563	NA	1/787	1/4234
Fusion	Breast	ERBB4--SLC25A10	HLA-C07:01	LRQRFSWRL	0.9939	0.6338	0.4113	273.5	0.0991	NA	1/787	1/4234
Fusion	Breast	ERBB4--SLC25A10	HLA-C07:02	LRQRFSWRL	0.8852	0.9556	0.6692	240.7	0.1582	NA	1/787	1/4234
Fusion	Breast	ATRN--RNF24	HLA-A02:01	IALPALCSV	0.9357	0.7875	0.4675	252.3	1.9107	NA	1/787	1/4234
Fusion	Breast	ATRN--RNF24	HLA-C03:04	IALPALCSV	0.9854	0.9925	0.3413	23.1	0.101	NA	1/787	1/4234
Fusion	Breast	CPD--AATF	HLA-A02:01	SLITLIEKLL	0.9399	0.5448	1.6984	127.4	1.237	NA	1/787	1/4234
Fusion	Breast	CPD--AATF	HLA-A02:01	SLITLIEKL	0.9929	0.6614	0.0017	36.8	0.4835	NA	1/787	1/4234
Fusion	Breast	KDM5B--RABGAP1L	HLA-A02:01	FLSGDSLRRV	0.9949	0.7215	0.1718	42.9	0.553	NA	1/787	1/4234
Fusion	Breast	KDM5B--RABGAP1L	HLA-A02:01	IMNSQVEQV	0.998	0.5063	0.0131	21.3	0.2917	NA	1/787	1/4234
Fusion	Breast	KDM5B--RABGAP1L	HLA-A02:01	SQVEQVMCL	0.9494	0.5768	0.1898	259.6	1.944	NA	1/787	1/4234
Fusion	Breast	TMED5--HFM1	HLA-A32:01	ASLEIEYQI	0.8781	0.9012	1.211	247.3	0.4223	NA	1/787	1/4234
Fusion	Breast	FLOT2--PEX12	HLA-C16:01	LQNQIPPTM	0.964	0.9904	0.6996	158.8	0.5397	NA	1/787	1/4234
Fusion	Breast	FLOT2--PEX12	HLA-C16:01	MASCGGGLM	0.7058	0.9911	0.678	133.2	0.4562	NA	1/787	1/4234
Fusion	Breast	RCC2--PADI4	HLA-B42:01	IPAGQDSL	0.6585	0.7004	0.9173	489	1.2114	NA	1/787	1/4234
Fusion	Breast	RCC2--PADI4	HLA-C16:01	RGYQWTGLL	0.7239	0.9826	0.8951	55	0.1814	NA	1/787	1/4234
Fusion	Breast	PEX1--NBEA	HLA-C07:02	SRMNFISVKL	0.9926	0.8403	0.1872	298.6	0.1966	NA	1/787	1/4234
Fusion	Breast	PEX1--NBEA	HLA-C12:03	RMNFISVKL	0.9783	0.9631	1.2529	340.4	1.1904	NA	1/787	1/4234
Fusion	Breast	FNIP1--MEIKIN	HLA-C07:01	FRYHNKNGM	0.9945	0.6213	0.296	27	0.0092	NA	1/787	1/4234
Fusion	Breast	KAT6A--ANK1	HLA-C08:02	KADAATSFL	0.9997	0.9749	0.0121	39.6	0.0083	NA	1/787	1/4234
Fusion	Breast	TYW1--TPST1	HLA-B35:01	FTRHGSDCSY	0.9495	0.7807	1.4485	477.1	0.8557	NA	1/787	1/4234
Fusion	Breast	DIXDC1--C11orf1	HLA-B35:01	EPSDLSESL	0.9835	0.7436	0.8108	395.8	0.7594	NA	1/787	1/4234
Fusion	Breast	LANCL2--TFDP2	HLA-B35:01	YMLMQQIAF	0.8246	0.9573	1.5067	73.8	0.256	NA	1/787	1/4234
Fusion	Breast	KLHL18--TEX264	HLA-A02:01	KLCDVTLKV	0.9986	0.7406	0.0005	14.3	0.1746	NA	1/787	1/4234
Fusion	Breast	UVRAG--SHANK2	HLA-B53:01	EPAGTGTCSTW	0.9899	0.6918	0.2253	330	0.3497	NA	1/787	1/4234
Fusion	Breast	UVRAG--SHANK2	HLA-B57:01	AGTGTCSTW	0.9776	0.9844	0.4933	493.1	0.7409	NA	1/787	1/4234
Fusion	Breast	ESR1--ASPH	HLA-B15:01	SLMTPLSTRY	0.9999	0.9077	0.0835	24.4	0.1072	NA	1/787	1/4234
Fusion	Breast	ESR1--ASPH	HLA-B15:01	LMTPLSTRY	0.9998	0.8295	0.1072	24.9	0.1106	NA	1/787	1/4234
Fusion	Breast	ESR1--ASPH	HLA-C07:02	TRYGRMPHL	0.8921	0.9229	0.184	39.4	0.0156	NA	1/787	1/4234
Fusion	Breast	MYB--UMAD1	HLA-C16:01	LASPLQKHL	0.919	0.9725	0.1688	304.9	0.9532	NA	1/787	1/4234
Fusion	Breast	E2F3--AKIRIN2	HLA-B35:01	MPLQQQNKF	0.9982	0.8109	0.0096	12.7	0.0481	NA	1/787	1/4234
Fusion	Breast	ZNF610--UQCRFS1	HLA-B35:01	NTVPASVCY	0.9198	0.7992	0.1182	74.4	0.2575	NA	1/787	1/4234
Fusion	Breast	PITPNC1--ANXA10	HLA-B35:01	MPLTVDEDL	0.9696	0.9545	0.5128	75.6	0.2609	NA	1/787	1/4234
Fusion	Breast	SEC24D--CFI	HLA-B35:01	FATIPSNEVTY	0.9962	0.8323	0.1448	115.1	0.3494	NA	1/787	1/4234
Fusion	Breast	SEC24D--CFI	HLA-B35:01	IPSNEVTY	0.9866	0.792	0.3199	174.4	0.452	NA	1/787	1/4234
Fusion	Breast	SEC24D--CFI	HLA-A68:02	FATIPSNEV	0.988	0.6978	0.1072	42.3	0.3673	NA	1/787	1/4234
Fusion	Breast	SMARCE1--HELZ	HLA-B35:01	NPGTNSRVTY	0.9554	0.6982	0.4951	307.3	0.6509	NA	1/787	1/4234
Fusion	Breast	SPTBN2--FGF19	HLA-A02:01	YLFQAKDEL	0.9861	0.5549	0.024	18.5	0.2473	NA	1/787	1/4234
Fusion	Breast	SPTBN2--FGF19	HLA-C03:04	YLFQAKDEL	0.9747	0.9923	0.167	42.2	0.1857	NA	1/787	1/4234
Fusion	Breast	SPTBN2--FGF19	HLA-C16:01	YLFQAKDEL	0.8626	0.9791	0.193	82.2	0.2876	NA	1/787	1/4234
Fusion	Breast	TCF12--TMEM255B	HLA-A02:01	ALVCGVSAAGV	0.9855	0.713	1.8393	188.6	1.5858	NA	1/787	1/4234
Fusion	Breast	TCF12--TMEM255B	HLA-A02:01	FLRNYWHQL	0.9565	0.7247	0.1566	26.9	0.3658	NA	1/787	1/4234
Fusion	Breast	TCF12--TMEM255B	HLA-C16:01	FLRNYWHQL	0.6188	0.989	0.5454	148.2	0.5059	NA	1/787	1/4234
Fusion	Breast	CDH1--NADK2	HLA-C03:03	HSILTGLQL	0.9994	0.9933	0.1285	29	0.1279	NA	1/787	1/4234
Fusion	Breast	LRRK1--ADAMTS17	HLA-C03:03	SSYPGKTVLL	0.9997	0.9849	0.0267	300.6	0.7239	NA	1/787	1/4234
Fusion	Breast	LRRK1--ADAMTS17	HLA-C03:03	SSYPGKTVL	0.9996	0.9909	0.0187	7.4	0.0275	NA	1/787	1/4234
Fusion	Breast	MAST2--C6orf52	HLA-B08:01	SLPRRGSL	0.9945	0.7927	1.205	95.9	0.1718	NA	1/787	1/4234
Fusion	Breast	MAST2--C6orf52	HLA-B08:01	LSLPRRGSL	0.9909	0.726	0.5328	134.9	0.2418	NA	1/787	1/4234
Fusion	Breast	MAST2--C6orf52	HLA-C03:03	LSLPRRGSL	0.9946	0.9813	0.5347	184.5	0.5345	NA	1/787	1/4234
Fusion	Breast	CDH11--PRC1	HLA-B35:01	HLFREENTPY	0.93	0.9149	1.3273	448.8	0.823	NA	1/787	1/4234
Fusion	Breast	CDH11--PRC1	HLA-B35:01	VPWLGPPPA	0.9201	0.7853	0.1514	276.3	0.6116	NA	1/787	1/4234
Fusion	Breast	CDH11--PRC1	HLA-B55:01	VPWLGPPPA	0.9827	0.7422	0.0441	86.4	0.0243	NA	1/787	1/4234
Fusion	Breast	ELMOD3--TCF7L1	HLA-B58:02	LAFRGIPVPW	0.9995	0.9926	0.3184	403.1	0.0236	NA	1/787	1/4234
Fusion	Breast	ELMOD3--TCF7L1	HLA-B08:01	RLRLQPPPL	0.9134	0.8201	0.5231	182	0.3224	NA	1/787	1/4234
Fusion	Breast	ELMOD3--TCF7L1	HLA-B08:01	VLAFRGIPV	0.9729	0.7655	1.8454	277.4	0.4709	NA	1/787	1/4234
Fusion	Breast	ELMOD3--TCF7L1	HLA-C07:01	SRCYRPSLF	0.9955	0.7774	0.1915	284.5	0.1031	NA	1/787	1/4234
Fusion	Breast	FBXO22--SNX33	HLA-A03:01	QLTEVGAFAK	0.9917	0.5098	0.9203	345.6	0.9421	NA	1/787	1/4234
Fusion	Breast	NINL--TGM2	HLA-B07:02	TPWRQGRKL	0.9981	0.546	0.0948	27.8	0.1017	NA	1/787	1/4234
Fusion	Breast	AGAP1--RINT1	HLA-A24:02	TYHPSLHFFL	0.9954	0.5219	0.0962	28.8	0.0626	NA	1/787	1/4234
Fusion	Breast	AGAP1--RINT1	HLA-B15:01	LTYHPSLHFF	0.999	0.8659	1.7204	77.7	0.4166	NA	1/787	1/4234
Fusion	Breast	AGAP1--RINT1	HLA-B15:01	LTYHPSLHF	0.9985	0.91	0.3514	26.2	0.1187	NA	1/787	1/4234
Fusion	Breast	AGAP1--RINT1	HLA-C03:04	LTYHPSLHF	0.9972	0.9882	0.5144	124.2	0.4157	NA	1/787	1/4234
Fusion	Breast	UTRN--AXIN1	HLA-B15:01	ILAGASQPL	0.9903	0.8765	1.1277	184.6	0.8596	NA	1/787	1/4234
Fusion	Breast	UTRN--AXIN1	HLA-B15:01	LQYDHCKVW	0.9468	0.9657	0.555	358.4	1.3936	NA	1/787	1/4234
Fusion	Breast	UTRN--AXIN1	HLA-B27:05	CRLCPGPSH	0.996	0.7873	1.4441	319.2	0.8907	NA	1/787	1/4234
Fusion	Breast	UTRN--AXIN1	HLA-C03:04	ILAGASQPL	0.982	0.9806	0.7473	71.4	0.286	NA	1/787	1/4234
Fusion	Breast	UTRN--AXIN1	HLA-C03:04	LAGASQPLL	0.999	0.9885	0.6535	279.5	0.693	NA	1/787	1/4234
Fusion	Breast	ABCB9--EIF2B1	HLA-C03:04	FVLGDCMEI	0.9879	0.9864	0.7329	99.4	0.3618	NA	1/787	1/4234
Fusion	Breast	ARIH2--DHX30	HLA-C03:04	ISAHTKDSL	0.9981	0.9837	0.7533	312	0.74	NA	1/787	1/4234
Fusion	Breast	DPP3--PACS1	HLA-B08:01	FLRRLQEI	0.999	0.5295	0.9525	23.8	0.0404	NA	1/787	1/4234
Fusion	Breast	METAP2--VEZT	HLA-C15:02	KLDSIQVSI	0.9903	0.7354	0.1039	442.5	0.4717	NA	1/787	1/4234
Fusion	Breast	MTF2--RPL5	HLA-A11:01	GTVPKCPLLR	0.9924	0.592	0.3577	210.6	1.0373	NA	1/787	1/4234
Fusion	Breast	MTF2--RPL5	HLA-B08:01	CPLLRRRI	0.9954	0.8536	1.6929	161.4	0.2863	NA	1/787	1/4234
Fusion	Breast	MTF2--RPL5	HLA-C03:04	LLYERIQSM	0.9969	0.9852	0.0686	70.9	0.2841	NA	1/787	1/4234
Fusion	Breast	NEBL--FBXO11	HLA-B08:01	WLQKNQVL	0.9974	0.5478	1.9897	146.3	0.2617	NA	1/787	1/4234
Fusion	Breast	NEBL--FBXO11	HLA-C03:04	RTVWRAPQL	0.9857	0.9852	0.5904	374.6	0.8242	NA	1/787	1/4234
Fusion	Breast	NEBL--FBXO11	HLA-C15:02	KTLVIVQNV	0.999	0.8884	0.0062	307.9	0.3359	NA	1/787	1/4234
Fusion	Breast	NEBL--FBXO11	HLA-C15:02	RTVWRAPQL	0.9986	0.9575	0.193	67.1	0.0554	NA	1/787	1/4234
Fusion	Breast	SIRT7--CCDC57	HLA-C03:04	SSLKSSQLL	0.9977	0.9791	0.9642	303	0.7273	NA	1/787	1/4234
Fusion	Breast	SIRT7--CCDC57	HLA-C15:02	SSLKSSQLL	0.9991	0.7287	0.5512	300.7	0.3278	NA	1/787	1/4234
Fusion	Breast	TAF4--GATA5	HLA-B08:01	LLRIHKECL	0.9946	0.6478	0.2253	21.1	0.0355	NA	1/787	1/4234
Fusion	Breast	TAF4--GATA5	HLA-C03:04	FQLPPGAAA	0.6222	0.9956	0.5419	301.6	0.7253	NA	1/787	1/4234
Fusion	Breast	DCAF6--MPZL1	HLA-B15:16	VTAGVSALEVY	0.9793	0.9235	1.276	484.8	1.6466	NA	1/787	1/4234
Fusion	Breast	DCAF6--MPZL1	HLA-C16:01	SVTAGVSAL	0.865	0.975	0.4769	74.4	0.2596	NA	1/787	1/4234
Fusion	Breast	ILKAP--PER2	HLA-C16:01	KAGGNVRNL	0.7216	0.9924	0.5181	265.3	0.8517	NA	1/787	1/4234
Fusion	Breast	MAN2B1--RTBDN	HLA-C16:01	LVNAQMRIL	0.9125	0.9782	0.6191	310.3	0.9662	NA	1/787	1/4234
Fusion	Breast	MCU--CDH23	HLA-B15:16	RTATDNDAGTF	0.9983	0.9356	0.6572	423.2	1.4703	NA	1/787	1/4234
Fusion	Breast	RNF121--ANO1	HLA-B15:16	RSYNLLNSL	0.9951	0.6025	0.2197	41.4	0.1067	NA	1/787	1/4234
Fusion	Breast	RNF121--ANO1	HLA-B57:03	RSYNLLNSL	0.991	0.9564	0.1761	93.7	0.2001	NA	1/787	1/4234
Fusion	Breast	RNF121--ANO1	HLA-C07:01	QRHPRSYNL	0.9991	0.6487	0.0948	103.7	0.0396	NA	1/787	1/4234
Fusion	Breast	RNF121--ANO1	HLA-C16:01	RSYNLLNSL	0.9914	0.9896	0.148	10.5	0.0143	NA	1/787	1/4234
Fusion	Breast	SMAD3--DIS3L	HLA-B15:16	ITIPRITWTI	0.9924	0.6939	1.7146	54	0.1628	NA	1/787	1/4234
Fusion	Breast	SMAD3--DIS3L	HLA-B57:03	ITIPRITWTI	0.9946	0.9529	0.5534	152.5	0.3223	NA	1/787	1/4234
Fusion	Breast	SMAD3--DIS3L	HLA-B57:03	KCITIPRITW	0.9978	0.9031	0.2319	221.5	0.4275	NA	1/787	1/4234
Fusion	Breast	SMAD3--DIS3L	HLA-B15:16	ITIPRITW	0.9987	0.7153	0.6891	235.4	0.8502	NA	1/787	1/4234
Fusion	Breast	SMAD3--DIS3L	HLA-B57:03	ITIPRITW	0.9995	0.9689	0.1418	48.7	0.1008	NA	1/787	1/4234
Fusion	Breast	SMAD3--DIS3L	HLA-B15:16	ITWTISGLI	0.9603	0.7462	1.5203	39.1	0.097	NA	1/787	1/4234
Fusion	Breast	SMAD3--DIS3L	HLA-B57:03	CITIPRITW	0.842	0.9153	0.4263	463.8	0.7537	NA	1/787	1/4234
Fusion	Breast	SMAD3--DIS3L	HLA-B57:03	ITWTISGLI	0.8746	0.9753	0.8492	484	0.7778	NA	1/787	1/4234
Fusion	Breast	SRBD1--CCDC88A	HLA-C16:01	VGMYQVKTF	0.6934	0.9818	0.6911	153.6	0.5233	NA	1/787	1/4234
Fusion	Breast	TP53BP1--DMXL2	HLA-B15:16	HSQKLIGEVF	0.9966	0.7188	1.2627	281.4	1.0077	NA	1/787	1/4234
Fusion	Breast	SCMH1--AGO3	HLA-B07:02	CPSRASHASA	0.9948	0.5058	1.749	95.1	0.2859	NA	1/787	1/4234
Fusion	Breast	GSE1--METTL23	HLA-A33:03	RNFGCQMWCR	0.975	0.5307	1.0266	258.8	0.7824	NA	1/787	1/4234
Fusion	Breast	KIAA0100--TEX14	HLA-C17:01	AAAPLLATV	0.9925	0.9937	0.0412	444.7	0.1269	NA	1/787	1/4234
Fusion	Breast	FNTA--OVOL1	HLA-A02:01	GLLPTTALPGA	0.957	0.6189	0.2925	199.3	1.6424	NA	1/787	1/4234
Fusion	Breast	FNTA--OVOL1	HLA-A02:01	YVLYSQPGL	0.8658	0.6079	0.651	187.2	1.5788	NA	1/787	1/4234
Fusion	Breast	CP--SOX5	HLA-A02:01	KLISVDTKL	0.9842	0.6898	0.0052	53.7	0.668	NA	2/787	2/4234
Fusion	Breast	CP--SOX5	HLA-C05:01	SVDTKLMAI	0.9999	0.8371	0.1656	152.4	0.0776	NA	2/787	2/4234
Fusion	Breast	MPP2--PPY	HLA-B07:02	SPIVRSLAKM	0.9936	0.5108	0.5779	23	0.0819	NA	1/787	1/4234
Fusion	Breast	C16orf87--ATXN2	HLA-B15:01	QQAHVQSGM	0.9969	0.7611	0.8361	133.4	0.6693	NA	1/787	1/4234
Fusion	Breast	EDARADD--TGFBR3	HLA-A32:01	LSFNMVQSL	0.716	0.9739	0.4825	205.4	0.3608	NA	1/787	1/4234
Fusion	Breast	EDARADD--TGFBR3	HLA-C12:03	LSFNMVQSL	0.9945	0.992	0.2071	12	0.0344	NA	1/787	1/4234
Fusion	Breast	EDARADD--TGFBR3	HLA-C12:03	LVHCVNCHL	0.8142	0.9662	1.7785	180.2	0.7554	NA	1/787	1/4234
Fusion	Breast	TM9SF2--CLYBL	HLA-A02:01	FLCPGKASL	0.9817	0.7278	0.0383	47.6	0.6034	NA	1/787	1/4234
Fusion	Breast	ITPR2--ANO2	HLA-A29:02	LILLGAANMY	0.9958	0.6263	1.1277	191.6	0.6222	NA	1/787	1/4234
Fusion	Breast	ITPR2--ANO2	HLA-A29:02	ILLGAANMY	0.9974	0.5779	0.3445	31.1	0.1537	NA	1/787	1/4234
Fusion	Breast	SLC4A8--ZFP36L1	HLA-B57:03	KTPAHLQQTF	0.9981	0.9814	0.0523	52.6	0.1109	NA	1/787	1/4234
Fusion	Breast	ARMC1--PEX19	HLA-A02:01	GLDDTLQDL	0.9594	0.7191	0.4951	154.6	1.4092	NA	1/787	1/4234
Fusion	Breast	BCAS3--RNFT1	HLA-A30:01	KQRHLGQRK	0.992	0.6501	0.5245	29.9	0.1477	NA	1/787	1/4234
Fusion	Breast	BCAS3--VMP1	HLA-A30:01	KSIGSSGTL	0.8365	0.7375	1.9269	358.3	1.5581	NA	1/787	1/4234
Fusion	Breast	BCAS3--VMP1	HLA-C16:01	KSIGSSGTL	0.9775	0.9796	0.5399	56.4	0.1879	NA	1/787	1/4234
Fusion	Breast	CNOT2--SLC45A4	HLA-C16:01	ASLYGQQSL	0.8515	0.9769	0.433	98.6	0.3436	NA	1/787	1/4234
Fusion	Breast	CNOT2--SLC45A4	HLA-C16:01	SLPEQYYSL	0.9353	0.9731	0.037	359.1	1.07	NA	1/787	1/4234
Fusion	Breast	ERI3--CMPK1	HLA-B35:01	HPGKYGYTH	0.9022	0.7707	0.7594	412.7	0.7799	NA	1/787	1/4234
Fusion	Breast	MYSM1--ALG14	HLA-B18:01	DQEHVFLSVY	0.9657	0.7953	1.8644	36.4	0.0251	NA	1/787	1/4234
Fusion	Breast	MYSM1--ALG14	HLA-B18:01	QEHVFLSVY	0.9984	0.8203	0.0109	20.5	0.0141	NA	1/787	1/4234
Fusion	Breast	MYSM1--ALG14	HLA-B35:01	CVTDQEHVF	0.9589	0.9103	0.8607	397.8	0.7619	NA	1/787	1/4234
Fusion	Breast	MYSM1--ALG14	HLA-C02:02	LSVYLPFSL	0.7194	0.9824	1.1027	390.4	0.2541	NA	1/787	1/4234
Fusion	Breast	TMEM45A--CMSS1	HLA-A30:01	KMGFKHPKPK	0.9914	0.616	1.3074	52.1	0.2716	NA	1/787	1/4234
Fusion	Breast	TMEM45A--CMSS1	HLA-A30:01	MGFKHPKPK	0.9928	0.8372	0.4614	36.6	0.1901	NA	1/787	1/4234
Fusion	Breast	TSPAN31--OS9	HLA-B35:01	LAINRSKQF	0.9678	0.7937	0.7702	481.8	0.861	NA	1/787	1/4234
Fusion	Breast	TUBB6--ROBO1	HLA-B35:01	FIFADCIANY	0.9891	0.8811	1.6082	118.2	0.3551	NA	1/787	1/4234
Fusion	Breast	TUBB6--ROBO1	HLA-B35:01	FADCIANY	0.9712	0.875	1.156	395.1	0.7585	NA	1/787	1/4234
Fusion	Breast	ALG6--UBE2U	HLA-B58:01	YSVLKVPNF	0.9929	0.7526	0.296	362	1.1663	NA	1/787	1/4234
Fusion	Breast	ALG6--UBE2U	HLA-C03:02	VSLNSYSVL	0.9976	0.967	0.9687	56.2	0.2737	NA	1/787	1/4234
Fusion	Breast	ALG6--UBE2U	HLA-C03:02	YSVLKVPNF	0.9984	0.9483	0.2352	66.4	0.3244	NA	1/787	1/4234
Fusion	Breast	SYNE2--RTN1	HLA-C03:02	MATSPFQRAL	0.9991	0.9724	1.073	164.9	0.6628	NA	1/787	1/4234
Fusion	Breast	SYNE2--RTN1	HLA-C03:02	RSWVHPAPPY	0.8436	0.976	0.5795	448.1	1.3573	NA	1/787	1/4234
Fusion	Breast	SYNE2--RTN1	HLA-C03:02	WVHPAPPYQM	0.9977	0.9678	1.0418	323.6	1.0955	NA	1/787	1/4234
Fusion	Breast	SYNE2--RTN1	HLA-B53:01	EAWDGLDHQVW	0.9991	0.9668	0.0154	211.3	0.2371	NA	1/787	1/4234
Fusion	Breast	SYNE2--RTN1	HLA-B58:01	TSPFQRALRSW	0.9979	0.9459	1.749	418.5	1.2727	NA	1/787	1/4234
Fusion	Breast	SYNE2--RTN1	HLA-B58:01	RILHILLEF	0.9644	0.8199	0.1609	362.2	1.1666	NA	1/787	1/4234
Fusion	Breast	SYNE2--RTN1	HLA-C03:02	ATSPFQRAL	0.9991	0.9773	0.0686	183.1	0.7226	NA	1/787	1/4234
Fusion	Breast	SYNE2--RTN1	HLA-C03:02	RILHILLEF	0.9262	0.9693	0.1418	453	1.3674	NA	1/787	1/4234
Fusion	Breast	SYNE2--RTN1	HLA-C03:02	SAIHLRRIL	0.9907	0.9569	0.2428	224.8	0.835	NA	1/787	1/4234
Fusion	Breast	TM9SF3--SLIT1	HLA-B58:01	HTAPGAEPF	0.9325	0.9953	1.0978	215	0.8195	NA	1/787	1/4234
Fusion	Breast	TM9SF3--SLIT1	HLA-C03:02	HTAPGAEPF	0.9934	0.9891	0.4967	27.3	0.1225	NA	1/787	1/4234
Fusion	Breast	PUM2--HS1BP3	HLA-A68:01	ETAWGASR	0.9981	0.5758	0.2482	91.4	0.8547	NA	1/787	1/4234
Fusion	Breast	NEDD4L--TLN2	HLA-A02:01	GLSEDEVTQL	0.9948	0.509	0.5868	255.6	1.9259	NA	1/787	1/4234
Fusion	Breast	APOPT1--ATP9A	HLA-A03:01	RTESGTVKVK	0.9725	0.5733	0.3514	396	1.0333	NA	1/787	1/4234
Fusion	Breast	PCNX3--SNX32	HLA-C16:01	YVKPSCASV	0.5378	0.9812	0.4183	214.6	0.7033	NA	1/787	1/4234
Fusion	Breast	SSH2--KLHL28	HLA-C16:01	ASMDHTSPTY	0.8598	0.9712	0.1775	379.5	1.1131	NA	1/787	1/4234
Fusion	Breast	SSH2--KLHL28	HLA-C16:01	TTSSPCASM	0.5621	0.9833	0.5741	373.6	1.0979	NA	1/787	1/4234
Fusion	Breast	TMTC2--PPFIA2	HLA-B44:03	NEFAALTKEL	0.9925	0.9714	0.3866	357.7	0.3447	NA	1/787	1/4234
Fusion	Breast	TMTC2--PPFIA2	HLA-C07:02	LRPNEFAAL	0.9515	0.9356	0.1242	183.7	0.117	NA	1/787	1/4234
Fusion	Breast	VPS41--ELMO1	HLA-C16:01	CSSPTTDPL	0.7867	0.9904	0.9574	244.8	0.7934	NA	1/787	1/4234
Fusion	Breast	PATJ--CACHD1	HLA-C03:03	FTDHGVTGL	0.9972	0.9937	0.0412	109.7	0.3843	NA	1/787	1/4234
Fusion	Breast	PATJ--CACHD1	HLA-C16:01	FTDHGVTGL	0.9152	0.9869	0.0778	153.6	0.5234	NA	1/787	1/4234
Fusion	Breast	ASCC3--ATL1	HLA-B18:01	YEPFPVESRF	0.9385	0.9394	1.2301	346	0.2224	NA	1/787	1/4234
Fusion	Breast	ASCC3--ATL1	HLA-B27:05	SRFVVVTNHF	1	0.8617	0.1435	143.9	0.4726	NA	1/787	1/4234
Fusion	Breast	ASCC3--ATL1	HLA-A68:01	HFWPQMTCR	0.9569	0.5971	1.3273	335.9	1.8332	NA	1/787	1/4234
Fusion	Breast	CHD2--HOMER2	HLA-A02:05	NTFAEKFQEV	0.9946	0.5227	0.2482	243.8	1.4227	NA	1/787	1/4234
Fusion	Breast	CHD2--HOMER2	HLA-B58:01	MSRNTFAEKF	0.9919	0.8576	1.1792	57.9	0.319	NA	1/787	1/4234
Fusion	Breast	CHD2--HOMER2	HLA-C07:01	SRNTFAEKF	0.9977	0.8256	0.0441	441.2	0.1508	NA	1/787	1/4234
Fusion	Breast	PCMTD1--FBXO3	HLA-A02:01	LMFPFADAAA	0.9679	0.5605	0.2352	64.8	0.7809	NA	1/787	1/4234
Fusion	Breast	PCMTD1--FBXO3	HLA-A02:01	SLMFPFADAA	0.9805	0.7452	1.1952	67.6	0.8064	NA	1/787	1/4234
Fusion	Breast	PCMTD1--FBXO3	HLA-A02:05	LMFPFADAAA	0.9793	0.8427	0.1055	163.3	1.0216	NA	1/787	1/4234
Fusion	Breast	PCMTD1--FBXO3	HLA-A02:05	SLMFPFADAA	0.9868	0.8954	0.6715	125.7	0.8089	NA	1/787	1/4234
Fusion	Breast	PCMTD1--FBXO3	HLA-B58:01	FADAAAHAFF	0.9744	0.9913	0.7702	135.4	0.5883	NA	1/787	1/4234
Fusion	Breast	PCMTD1--FBXO3	HLA-B58:01	KNSDSFDKKW	0.9979	0.7369	0.3787	169.2	0.6845	NA	1/787	1/4234
Fusion	Breast	PCMTD1--FBXO3	HLA-B58:01	KTRMMIQQIW	0.9986	0.9358	0.2197	4.5	0.0122	NA	1/787	1/4234
Fusion	Breast	PCMTD1--FBXO3	HLA-C05:01	FADAAAHAFF	1	0.9823	0.0356	45.1	0.0248	NA	1/787	1/4234
Fusion	Breast	PCMTD1--FBXO3	HLA-B58:01	RMMIQQIW	0.9934	0.9853	1.4611	96.4	0.4647	NA	1/787	1/4234
Fusion	Breast	PCMTD1--FBXO3	HLA-A02:01	LMFPFADAA	0.985	0.5187	0.1401	35.8	0.4723	NA	1/787	1/4234
Fusion	Breast	PCMTD1--FBXO3	HLA-A02:01	RMMIQQIWM	0.8202	0.5083	0.9762	190.9	1.5971	NA	1/787	1/4234
Fusion	Breast	PCMTD1--FBXO3	HLA-A02:01	SLMFPFADA	0.9443	0.6805	0.2942	69	0.8187	NA	1/787	1/4234
Fusion	Breast	PCMTD1--FBXO3	HLA-A02:05	LMFPFADAA	0.9894	0.7988	0.1227	67.1	0.4295	NA	1/787	1/4234
Fusion	Breast	PCMTD1--FBXO3	HLA-A02:05	SLMFPFADA	0.9611	0.823	0.2557	186.5	1.1413	NA	1/787	1/4234
Fusion	Breast	PCMTD1--FBXO3	HLA-B58:01	NSDSFDKKW	0.9765	0.734	0.1547	476.2	1.3826	NA	1/787	1/4234
Fusion	Breast	PCMTD1--FBXO3	HLA-B58:01	WVLMNMKRW	0.9826	0.977	1.6082	122.7	0.55	NA	1/787	1/4234
Fusion	Breast	PCMTD1--FBXO3	HLA-C05:01	FADAAAHAF	0.9999	0.9867	0.0045	11	0.0076	NA	1/787	1/4234
Fusion	Breast	SSR3--TRPC1	HLA-B58:01	FNGTDVTRFW	0.9965	0.853	0.8186	152.8	0.64	NA	1/787	1/4234
Fusion	Breast	SSR3--TRPC1	HLA-B58:01	SSCFVFFHNW	0.9987	0.911	0.3956	20.4	0.1331	NA	1/787	1/4234
Fusion	Breast	SSR3--TRPC1	HLA-B58:01	ISWDVSSCFVF	0.9972	0.8864	1.0863	118.8	0.5373	NA	1/787	1/4234
Fusion	Breast	SSR3--TRPC1	HLA-B58:01	VSSCFVFFHNW	0.9984	0.9511	0.6635	43.8	0.2607	NA	1/787	1/4234
Fusion	Breast	SSR3--TRPC1	HLA-B58:01	ISWDVSSCF	0.9916	0.8597	0.4986	46.2	0.2708	NA	1/787	1/4234
Fusion	Breast	SSR3--TRPC1	HLA-B58:01	IVSAIPIYF	0.9741	0.6979	0.276	50.3	0.287	NA	1/787	1/4234
Fusion	Breast	SSR3--TRPC1	HLA-B58:01	NGTDVTRFW	0.9967	0.8732	0.0794	318.1	1.0832	NA	1/787	1/4234
Fusion	Breast	SSR3--TRPC1	HLA-B58:01	SCFVFFHNW	0.99	0.9459	0.5038	288.1	1.0136	NA	1/787	1/4234
Fusion	Breast	SSR3--TRPC1	HLA-B58:01	VTRFWKISW	0.9968	0.9487	0.1025	88	0.4365	NA	1/787	1/4234
Fusion	Breast	CRLS1--SEL1L2	HLA-A32:01	QMKETSYLRW	0.9859	0.9794	0.2396	417.2	0.6537	NA	1/787	1/4234
Fusion	Breast	CRLS1--SEL1L2	HLA-B35:01	FALAGLTDLY	0.9968	0.8039	0.4675	22.2	0.0913	NA	1/787	1/4234
Fusion	Breast	OAS3--RPH3A	HLA-A32:01	RTNLATMNLL	0.9796	0.9198	1.3243	325.4	0.5318	NA	1/787	1/4234
Fusion	Breast	OAS3--RPH3A	HLA-A32:01	RTNLATMNL	0.9762	0.9607	0.2213	50.6	0.0892	NA	1/787	1/4234
Fusion	Breast	OAS3--RPH3A	HLA-B35:01	DALGSPSVM	0.9803	0.937	0.3089	75.4	0.2604	NA	1/787	1/4234
Fusion	Breast	USP22--SPACA3	HLA-A02:01	LLWTTRLMGA	0.9571	0.633	1.2465	54	0.6714	NA	1/787	1/4234
Fusion	Breast	USP22--SPACA3	HLA-A31:01	MGAPTTGSSR	0.9223	0.7088	1.1589	376.2	1.7764	NA	1/787	1/4234
Fusion	Breast	USP22--SPACA3	HLA-A31:01	VSTQLLWTTR	0.9448	0.7858	1.3074	63.7	0.5312	NA	1/787	1/4234
Fusion	Breast	USP22--SPACA3	HLA-A31:01	AVSTQLLWTTR	0.9542	0.8565	1.0016	171.8	1.0845	NA	1/787	1/4234
Fusion	Breast	USP22--SPACA3	HLA-A31:01	STQLLWTTR	0.9527	0.7909	0.0427	12.7	0.0723	NA	1/787	1/4234
Fusion	Breast	USP22--SPACA3	HLA-C07:01	KRKGSALLI	0.9875	0.6293	0.4845	294.9	0.1069	NA	1/787	1/4234
Fusion	Breast	TANC2--ANKFN1	HLA-A03:01	RAKWNGVCPK	0.994	0.6708	0.5296	89.2	0.3326	NA	1/787	1/4234
Fusion	Breast	INTS4--EMSY	HLA-B15:01	GIKQSHCFY	0.9949	0.8429	0.7226	146.5	0.7221	NA	1/787	1/4234
Fusion	Breast	SLCO2B1--CEP128	HLA-C03:04	SPASWFSSV	0.5071	0.9933	0.8317	458.3	0.9477	NA	1/787	1/4234
Fusion	Breast	SLCO2B1--CEP128	HLA-C07:01	YRYDNTSPA	0.9511	0.6857	0.8562	195.4	0.0743	NA	1/787	1/4234
Fusion	Breast	SYNE2--KIAA0391	HLA-C03:04	TSMEESLKL	0.9994	0.9888	0.23	107.3	0.3793	NA	1/787	1/4234
Fusion	Breast	GPATCH8--NPLOC4	HLA-B27:05	LRQKYKIIR	0.9953	0.7965	0.7356	302	0.8557	NA	1/787	1/4234
Fusion	Breast	XRRA1--FAM168A	HLA-A02:01	MLQSFSSCI	0.972	0.7163	0.5165	54.6	0.6773	NA	1/787	1/4234
Fusion	Breast	XRRA1--FAM168A	HLA-C03:03	FSKVTPQPI	0.9786	0.9403	0.5671	67.5	0.273	NA	1/787	1/4234
Fusion	Breast	XRRA1--FAM168A	HLA-C03:03	QSFSSCIQL	0.9986	0.9591	0.8723	280.5	0.6944	NA	1/787	1/4234
Fusion	Breast	CDK5R1--PSMD11	HLA-B08:01	LGLDRFSAA	0.9904	0.6385	1.9269	275.7	0.4687	NA	1/787	1/4234
Fusion	Breast	CDK5R1--PSMD11	HLA-B35:01	QPAESPSCL	0.8635	0.9028	0.6058	473.1	0.8512	NA	1/787	1/4234
Fusion	Breast	CDK5R1--PSMD11	HLA-B35:01	SSFGGSTAF	0.9889	0.8571	0.1025	25.5	0.1016	NA	1/787	1/4234
Fusion	Breast	KMT2C--AUTS2	HLA-B08:01	MPALKNSSTL	0.9964	0.7139	0.3137	104.8	0.1869	NA	1/787	1/4234
Fusion	Breast	KMT2C--AUTS2	HLA-B35:01	MPALKNSSTL	0.9879	0.6639	0.5365	129	0.374	NA	1/787	1/4234
Fusion	Breast	KMT2C--AUTS2	HLA-B08:01	MPALKNSSTLL	0.9935	0.7653	0.8444	368.5	0.5903	NA	1/787	1/4234
Fusion	Breast	KMT2C--AUTS2	HLA-C07:01	ARKNVTVTV	0.9546	0.8809	0.1014	351.8	0.1258	NA	1/787	1/4234
Fusion	Breast	PI4KB--SELENBP1	HLA-B08:01	QGRDRLPAL	0.998	0.5799	0.4367	140.4	0.2514	NA	1/787	1/4234
Fusion	Breast	PI4KB--SELENBP1	HLA-C07:01	MRFYEMWEL	0.9993	0.7913	0.2913	70.8	0.0226	NA	1/787	1/4234
Fusion	Breast	PPP2R3A--TOPBP1	HLA-B35:01	TPRAEDFPF	0.9831	0.8793	0.2636	15.2	0.0613	NA	1/787	1/4234
Fusion	Breast	SETD5--SAMD12	HLA-C07:01	SRYSYQLSTV	0.9472	0.7209	0.0452	323.6	0.1169	NA	1/787	1/4234
Fusion	Breast	TACC2--ATE1	HLA-B08:01	HPWRQRLPLM	0.9845	0.5118	1.0601	199.1	0.3533	NA	1/787	1/4234
Fusion	Breast	TACC2--ATE1	HLA-B35:01	HPWRQRLPLM	0.9455	0.8195	1.749	245.2	0.5665	NA	1/787	1/4234
Fusion	Breast	TACC2--ATE1	HLA-B35:01	LPLMGQIVAM	0.9951	0.8686	0.4382	13.3	0.0504	NA	1/787	1/4234
Fusion	Breast	TACC2--ATE1	HLA-B35:01	HPWRQRLPL	0.9769	0.8525	0.5365	43.4	0.1679	NA	1/787	1/4234
Fusion	Breast	TACC2--ATE1	HLA-B35:01	IAQSSQDSF	0.9363	0.7333	0.6467	180.5	0.462	NA	1/787	1/4234
Fusion	Breast	TACC2--ATE1	HLA-B35:01	LPLMGQIVA	0.8425	0.9308	0.2557	92.9	0.3033	NA	1/787	1/4234
Fusion	Breast	TMEM182--SLC9A2	HLA-B35:01	DSAVSFHLY	0.9628	0.7603	0.1336	182.3	0.4649	NA	1/787	1/4234
Fusion	Breast	TMEM182--SLC9A2	HLA-B35:01	TSYDSAVSF	0.9895	0.9145	0.259	59.8	0.2225	NA	1/787	1/4234
Fusion	Breast	ZNF385D--GLB1	HLA-B35:01	MYFGANSPY	0.953	0.9495	0.7967	50.8	0.1976	NA	1/787	1/4234
Fusion	Breast	INTS11--MXRA8	HLA-A03:01	RILGPEVGKVK	0.9997	0.8251	0.0441	419.9	1.0738	NA	1/787	1/4234
Fusion	Breast	INTS11--MXRA8	HLA-A03:01	RLRILGPEVGK	0.999	0.7034	0.251	92.6	0.343	NA	1/787	1/4234
Fusion	Breast	INTS11--MXRA8	HLA-A03:01	RILGPEVGK	0.9992	0.7112	0.0734	58.9	0.2225	NA	1/787	1/4234
Fusion	Breast	TBL1XR1--USP13	HLA-B35:03	FPFHSASDI	0.9904	0.8143	0.2942	129.6	0.0272	NA	1/787	1/4234
Fusion	Breast	ZFAND3--THEGL	HLA-C12:03	FAANPVSCDF	0.9962	0.9738	0.3736	197.7	0.816	NA	1/787	1/4234
Fusion	Breast	ZFAND3--THEGL	HLA-C12:03	AANPVSCDF	0.6067	0.9729	0.0962	204.6	0.8381	NA	1/787	1/4234
Fusion	Breast	ADCK2--DPP6	HLA-B15:01	KIYQHSYTGY	0.9998	0.6593	0.0495	53.5	0.2761	NA	1/787	1/4234
Fusion	Breast	ADCK2--DPP6	HLA-B15:01	MTHKIYQHSY	0.9988	0.7896	1.5795	86.2	0.461	NA	1/787	1/4234
Fusion	Breast	ADCK2--DPP6	HLA-B15:01	KIYQHSYTGYY	0.9998	0.6377	0.3837	81.4	0.4364	NA	1/787	1/4234
Fusion	Breast	ADCK2--DPP6	HLA-B15:01	KLLMTHKIY	0.9729	0.7162	0.7573	159.6	0.7698	NA	1/787	1/4234
Fusion	Breast	SOCS7--SRCIN1	HLA-A68:01	RVPDELTVPR	0.8555	0.6289	0.0096	146.1	1.1419	NA	1/787	1/4234
Fusion	Breast	AKAP8--VMP1	HLA-B08:01	YLKGPHIASV	0.9891	0.7491	1.7671	137.5	0.2463	NA	1/787	1/4234
Fusion	Breast	SLC25A17--ST13	HLA-A03:01	AVAGAVKLIK	0.9981	0.6378	0.2071	72	0.2728	NA	1/787	1/4234
Fusion	Breast	SLC25A17--ST13	HLA-A03:01	LVHAVAGAVK	0.9659	0.7068	0.8247	176.8	0.5867	NA	1/787	1/4234
Fusion	Breast	SLC25A17--ST13	HLA-A03:01	AVAGAVKLIKK	0.9991	0.5403	0.0299	419.7	1.0735	NA	1/787	1/4234
Fusion	Breast	SLC25A17--ST13	HLA-B35:01	HAVAGAVKL	0.9719	0.941	0.2526	251.4	0.576	NA	1/787	1/4234
Fusion	Breast	ASCC1--MICU1	HLA-C07:02	FRKDPNVTM	0.8446	0.9318	0.0601	34.4	0.0132	NA	1/787	1/4234
Fusion	Breast	LIMK2--RUFY1	HLA-C07:02	FRHERITDVL	0.99	0.9272	0.1821	116.7	0.063	NA	1/787	1/4234
Fusion	Breast	LIMK2--RUFY1	HLA-C07:02	FRHERITDV	0.731	0.9128	0.0888	59.2	0.0284	NA	1/787	1/4234
Fusion	Breast	MYO9A--TMEM59	HLA-C03:04	SAQFQLMSL	0.9994	0.9819	0.1734	63.8	0.26	NA	1/787	1/4234
Fusion	Breast	PCMTD1--WRN	HLA-C12:03	IAGTVYLAL	0.9777	0.9486	0.4789	180.3	0.7557	NA	1/787	1/4234
Fusion	Breast	PCMTD1--WRN	HLA-C12:03	INIAGTVYL	0.8878	0.9909	1.2493	215.7	0.8718	NA	1/787	1/4234
Fusion	Breast	VKORC1L1--GUSB	HLA-C03:02	AALASRMVI	0.99	0.9815	0.6655	127.1	0.5359	NA	1/787	1/4234
Fusion	Breast	VKORC1L1--GUSB	HLA-C03:04	AALASRMVI	0.9955	0.9913	0.5491	59.3	0.2441	NA	1/787	1/4234
Fusion	Breast	VKORC1L1--GUSB	HLA-C03:04	SAALASRMV	0.9684	0.9916	0.879	493.5	1.0032	NA	1/787	1/4234
Fusion	Breast	EAF1--BTD	HLA-C03:04	ASFHTIRYL	0.9924	0.9707	0.1641	146.1	0.4613	NA	1/787	1/4234
Fusion	Breast	EAF1--BTD	HLA-C03:04	FSSAAVTWL	0.9979	0.9903	0.645	21	0.0898	NA	1/787	1/4234
Fusion	Breast	EAF1--BTD	HLA-C03:04	LTITRLNIM	0.9975	0.9809	1.1	268.8	0.6774	NA	1/787	1/4234
Fusion	Breast	EAF1--BTD	HLA-C03:04	RAWLTITRL	0.9844	0.9904	0.4061	141.4	0.4521	NA	1/787	1/4234
Fusion	Breast	KIF16B--HIPK3	HLA-B35:01	FTIKFTQVF	0.9913	0.8339	0.0745	41.8	0.1618	NA	1/787	1/4234
Fusion	Breast	KIF16B--HIPK3	HLA-C03:04	FTIKFTQVF	0.9992	0.9807	0.0822	30	0.134	NA	1/787	1/4234
Fusion	Breast	KIF16B--HIPK3	HLA-C03:04	FTQVFLQHM	0.9981	0.9867	0.6996	489.1	0.9977	NA	1/787	1/4234
Fusion	Breast	PRPF19--DDB1	HLA-B35:01	HPSQQSTIV	0.8961	0.7655	0.7967	387.1	0.7485	NA	1/787	1/4234
Fusion	Breast	RABEP1--RORB	HLA-B40:01	KELHEAQIEV	0.9786	0.535	0.3717	324.6	0.5385	NA	1/787	1/4234
Fusion	Breast	STIM1--FITM2	HLA-B40:01	KEGVFCQSGL	0.9848	0.5347	1.0445	482.2	0.6784	NA	1/787	1/4234
Fusion	Breast	STIM1--FITM2	HLA-B35:01	HPACGHGHL	0.984	0.847	1.014	496.6	0.8771	NA	1/787	1/4234
Fusion	Breast	STIM1--FITM2	HLA-B35:01	SPSAFHCPH	0.8422	0.7321	1.3205	374.8	0.7325	NA	1/787	1/4234
Fusion	Breast	STIM1--FITM2	HLA-C03:04	AAVPPGRGL	0.9989	0.9815	0.0142	41.4	0.1832	NA	1/787	1/4234
Fusion	Breast	STIM1--FITM2	HLA-C03:04	SAFHCPHQL	0.9997	0.9793	0.1514	23.2	0.1015	NA	1/787	1/4234
Fusion	Breast	DNAJC1--DCLRE1C	HLA-C03:04	GAIMTPCIL	0.9975	0.9895	0.6572	88.6	0.3354	NA	1/787	1/4234
Fusion	Breast	KDM2A--CCDC170	HLA-C03:04	YSQRLIKTL	0.9995	0.9874	0.1872	129.6	0.4278	NA	1/787	1/4234
Fusion	Breast	KDM2A--CCDC170	HLA-C12:02	YSQRLIKTL	0.9958	0.9667	0.1898	403.7	0.5688	NA	1/787	1/4234
Fusion	Breast	MRPL48--DTX4	HLA-B50:01	AEEVLKLLLVA	0.9879	0.897	0.538	453.3	0.3158	NA	1/787	1/4234
Fusion	Breast	MRPL48--DTX4	HLA-C15:02	KAEEVLKLL	0.9988	0.8769	0.3736	440	0.4694	NA	1/787	1/4234
Fusion	Breast	IFT20--SUZ12	HLA-B57:03	KSQHRSIDFF	0.9968	0.9287	0.4246	244.8	0.4635	NA	1/787	1/4234
Fusion	Breast	IFT20--SUZ12	HLA-B57:03	RSIDFFELGI	0.9948	0.993	0.4675	208.5	0.4058	NA	1/787	1/4234
Fusion	Breast	IFT20--SUZ12	HLA-C07:01	HRSIDFFEL	0.9986	0.7799	0.1418	433	0.1485	NA	1/787	1/4234
Fusion	Breast	LIN7A--TRHDE	HLA-A30:01	MSQSTRLLSK	0.994	0.7516	0.9735	45	0.2361	NA	1/787	1/4234
Fusion	Breast	LIN7A--TRHDE	HLA-B57:03	KSASSIKQPI	0.9693	0.945	1.8016	408	0.6827	NA	1/787	1/4234
Fusion	Breast	LIN7A--TRHDE	HLA-A30:01	RLLSKSASSIK	0.9959	0.7055	0.9315	64.4	0.3303	NA	1/787	1/4234
Fusion	Breast	LIN7A--TRHDE	HLA-C07:01	FRLHMPERHFL	0.9998	0.7394	0.5279	487.4	0.1663	NA	1/787	1/4234
Fusion	Breast	LIN7A--TRHDE	HLA-A30:01	LSKSASSIK	0.9925	0.6997	0.713	17.1	0.0622	NA	1/787	1/4234
Fusion	Breast	LIN7A--TRHDE	HLA-A30:01	SFRLHMPER	0.9533	0.9103	1.3658	132	0.6478	NA	1/787	1/4234
Fusion	Breast	LIN7A--TRHDE	HLA-A30:01	SQSTRLLSK	0.9931	0.7119	0.4277	85.9	0.4315	NA	1/787	1/4234
Fusion	Breast	LIN7A--TRHDE	HLA-A30:01	STRLLSKSA	0.9715	0.8148	1.1763	17.8	0.0677	NA	1/787	1/4234
Fusion	Breast	LIN7A--TRHDE	HLA-C07:01	LRITFHRPL	0.9897	0.6214	0.5245	220.7	0.0827	NA	1/787	1/4234
Fusion	Breast	LIN7A--TRHDE	HLA-C12:03	LMSQSTRLL	0.9947	0.969	1.5385	246.2	0.9519	NA	1/787	1/4234
Fusion	Breast	LIN7A--TRHDE	HLA-C12:03	SASSIKQPI	0.9121	0.9117	0.6295	255.9	0.9748	NA	1/787	1/4234
Fusion	Breast	LIN7A--TRHDE	HLA-C12:03	SSIKQPIYL	0.9757	0.8642	0.0441	63.1	0.2978	NA	1/787	1/4234
Fusion	Breast	LRP8--RAD51C	HLA-C12:03	IGIIVPIEV	0.8818	0.9892	0.3235	351.8	1.2203	NA	1/787	1/4234
Fusion	Breast	MTMR1--FATE1	HLA-B07:02	RPWGCPSPGV	0.9919	0.7873	0.7226	46.7	0.164	NA	1/787	1/4234
Fusion	Breast	MTMR1--FATE1	HLA-A68:01	AAKAQNAER	0.851	0.5074	1.0891	312.3	1.7653	NA	1/787	1/4234
Fusion	Breast	MTMR1--FATE1	HLA-B07:02	RPWGCPSPG	0.9911	0.6525	0.9841	148.3	0.3869	NA	1/787	1/4234
Fusion	Breast	C1orf112--RPL5	HLA-B08:01	VMILKARNL	0.9818	0.763	0.8585	203.7	0.361	NA	1/787	1/4234
Fusion	Breast	CLTA--ZCCHC7	HLA-B08:01	NNRRRWYKL	0.9812	0.6939	0.5601	29.3	0.0491	NA	1/787	1/4234
Fusion	Breast	KATNA1--PPP2R1A	HLA-A02:01	RLLFEMELV	0.9957	0.5776	0.0539	16.6	0.2097	NA	1/787	1/4234
Fusion	Breast	KATNA1--PPP2R1A	HLA-C07:01	VRLLFEMEL	0.9984	0.7844	0.2367	462.8	0.1582	NA	1/787	1/4234
Fusion	Breast	KATNA1--PPP2R1A	HLA-C07:02	VRLLFEMEL	0.9814	0.9774	0.3028	248.6	0.1634	NA	1/787	1/4234
Fusion	Breast	MED1--NSF	HLA-A02:01	YMDPQVVVRL	0.9945	0.7034	0.0539	24.3	0.3329	NA	1/787	1/4234
Fusion	Breast	MED1--NSF	HLA-C05:01	YMDPQVVVRL	0.9999	0.9702	0.0344	56.5	0.0323	NA	1/787	1/4234
Fusion	Breast	MED1--NSF	HLA-A02:01	YMDPQVVV	0.9992	0.7204	1.3951	141.7	1.327	NA	1/787	1/4234
Fusion	Breast	MED1--NSF	HLA-C05:01	YMDPQVVV	1	0.9858	0.2089	157.6	0.0795	NA	1/787	1/4234
Fusion	Breast	MED1--NSF	HLA-A02:01	KLVRQVMVV	0.9674	0.6279	0.1807	44	0.5658	NA	1/787	1/4234
Fusion	Breast	MRPL48--DTX4	HLA-B44:02	EEVLKLLLVAW	0.9994	0.8098	0.5213	119.4	0.1484	NA	1/787	1/4234
Fusion	Breast	PUS1--ICOSLG	HLA-C05:01	RTDKSWTAL	0.9999	0.9619	0.0315	49.1	0.0281	NA	1/787	1/4234
Fusion	Breast	UBE2G1--SPNS3	HLA-A02:01	LLLRRQLAGV	0.9278	0.6757	1.418	64.7	0.78	NA	1/787	1/4234
Fusion	Breast	UBE2G1--SPNS3	HLA-B08:01	HPGRRWQPL	0.9862	0.6485	0.6875	18	0.028	NA	1/787	1/4234
Fusion	Breast	UBE2G1--SPNS3	HLA-B08:01	LLRRQLAGV	0.963	0.7594	1.8581	244.4	0.425	NA	1/787	1/4234
Fusion	Breast	UBE2G1--SPNS3	HLA-B08:01	QPLSHRTYL	0.9831	0.5641	0.0601	280.8	0.4753	NA	1/787	1/4234
Fusion	Breast	DAP3--ATF3	HLA-B07:02	TPRPELRFAI	0.9936	0.5631	0.2352	11	0.0295	NA	1/787	1/4234
Fusion	Breast	DAP3--ATF3	HLA-B44:03	AELKAQIEEL	0.9927	0.978	0.1072	454.1	0.4055	NA	1/787	1/4234
Fusion	Breast	DAP3--ATF3	HLA-A02:01	KLESVNAEL	0.9725	0.8607	0.4213	122.4	1.2049	NA	1/787	1/4234
Fusion	Breast	DAP3--ATF3	HLA-A02:01	RMSSALESV	0.9963	0.5668	0.0697	14	0.1707	NA	1/787	1/4234
Fusion	Breast	DAP3--ATF3	HLA-B07:02	TPRPELRFA	0.9959	0.519	0.2039	282.6	0.5949	NA	1/787	1/4234
Fusion	Breast	IPO11--TNFAIP8	HLA-A02:01	FLECMATDV	0.9835	0.5452	0.7767	90.6	0.9936	NA	1/787	1/4234
Fusion	Breast	AGAP1--WDR11	HLA-B18:01	IEEPVWCPY	0.9945	0.9786	0.7058	68.2	0.0469	NA	1/787	1/4234
Fusion	Breast	DOCK1--NPS	HLA-C12:03	RAKILNNSV	0.7893	0.9765	0.5195	283.3	1.0449	NA	1/787	1/4234
Fusion	Breast	MMD--PRKCA	HLA-C12:03	FQRKPNLAL	0.9995	0.9825	0.0835	57.6	0.2635	NA	1/787	1/4234
Fusion	Breast	MMD--PRKCA	HLA-C12:03	LATKSSVPL	0.9867	0.9758	0.6692	86.4	0.3938	NA	1/787	1/4234
Fusion	Breast	MMD--PRKCA	HLA-C12:03	TGNNLPTTL	0.7579	0.9797	0.7967	331.3	1.1684	NA	1/787	1/4234
Fusion	Breast	MRPL12--USP32	HLA-B35:08	VPAAAAQEL	0.9807	0.7738	0.0745	225.8	0.1599	NA	1/787	1/4234
Fusion	Breast	MRPL12--USP32	HLA-C12:03	AAAAQELQM	0.9284	0.995	0.3806	487.1	1.5225	NA	1/787	1/4234
Fusion	Breast	MSL2--PPP2R3A	HLA-A02:01	SLSCCVCAL	0.9526	0.5254	0.3639	34	0.4516	NA	1/787	1/4234
Fusion	Breast	MSL2--PPP2R3A	HLA-B08:01	IMKQMNLPL	0.985	0.6397	0.5868	69.2	0.1203	NA	1/787	1/4234
Fusion	Breast	NAA20--RIN2	HLA-A31:01	RFNNILFPGR	0.9917	0.6588	0.3577	6.9	0.0253	NA	1/787	1/4234
Fusion	Breast	NAA20--RIN2	HLA-A31:01	ILFPGRLR	0.9911	0.7995	1.3205	127.5	0.8991	NA	1/787	1/4234
Fusion	Breast	NAA20--RIN2	HLA-A30:01	RFIPAHCFL	0.7583	0.9814	0.9275	89.8	0.4513	NA	1/787	1/4234
Fusion	Breast	NAA20--RIN2	HLA-A30:01	RLRNQFRRF	0.8588	0.866	0.8294	137.5	0.6752	NA	1/787	1/4234
Fusion	Breast	NAA20--RIN2	HLA-A31:01	FNNILFPGR	0.8813	0.5107	0.793	445.5	1.9521	NA	1/787	1/4234
Fusion	Breast	NAA20--RIN2	HLA-A31:01	NILFPGRLR	0.8993	0.5785	0.0979	149.8	0.9978	NA	1/787	1/4234
Fusion	Breast	NAA20--RIN2	HLA-B35:01	FPGRLRNQF	0.9926	0.9154	0.4933	65.6	0.2366	NA	1/787	1/4234
Fusion	Breast	NAA20--RIN2	HLA-B35:01	IPAHCFLLH	0.8718	0.7203	0.7726	200.9	0.4929	NA	1/787	1/4234
Fusion	Breast	NAA20--RIN2	HLA-C16:01	FIPAHCFLL	0.8523	0.9736	0.2942	488.9	1.3548	NA	1/787	1/4234
Fusion	Breast	NAA20--RIN2	HLA-C16:01	RFIPAHCFL	0.8181	0.9845	1.0547	168.5	0.5688	NA	1/787	1/4234
Fusion	Breast	NAA20--RIN2	HLA-C16:01	STIYLEVAL	0.983	0.9911	0.6295	81	0.2836	NA	1/787	1/4234
Fusion	Breast	SS18L1--GID8	HLA-B35:01	LPAQQHLIEL	0.9861	0.775	0.3137	376.1	0.7342	NA	1/787	1/4234
Fusion	Breast	FAM129B--OLFM1	HLA-B15:01	RQHIAGAAH	0.9959	0.7844	0.4213	127.2	0.6427	NA	1/787	1/4234
Fusion	Breast	NACC2--NUP214	HLA-B15:01	GTNRILSFF	0.9357	0.8695	1.6663	373.9	1.4301	NA	1/787	1/4234
Fusion	Breast	NACC2--NUP214	HLA-C03:03	KASGSYAGL	0.9797	0.9925	0.6314	84.1	0.3235	NA	1/787	1/4234
Fusion	Breast	NACC2--NUP214	HLA-C03:03	LSIPGTNRI	0.987	0.9756	0.2778	72.2	0.2885	NA	1/787	1/4234
Fusion	Breast	NACC2--NUP214	HLA-C03:03	WSRLFRPTL	0.9933	0.9829	1.473	487.3	0.9948	NA	1/787	1/4234
Fusion	Breast	NACC2--NUP214	HLA-C03:03	YAGLSRVLV	0.9621	0.9886	0.8004	342.7	0.7807	NA	1/787	1/4234
Fusion	Breast	DPY19L1--NRXN2	HLA-C03:03	YGTYLRTQM	0.9981	0.9491	1.5795	163.4	0.4927	NA	1/787	1/4234
Fusion	Breast	EMSY--BBS9	HLA-B15:01	KQESEVPKCY	0.9938	0.7957	0.2367	340.9	1.35	NA	1/787	1/4234
Fusion	Breast	EMSY--BBS9	HLA-C03:03	YILENFVSTL	0.9993	0.9881	0.4409	231.7	0.6183	NA	1/787	1/4234
Fusion	Breast	NCOA5--CDH4	HLA-B07:02	RPSPTRSQVQ	0.9949	0.546	1.1173	171.5	0.4261	NA	1/787	1/4234
Fusion	Breast	NCOA5--CDH4	HLA-B07:02	SPTRSQVQQL	0.9899	0.5925	0.2557	33.5	0.1178	NA	1/787	1/4234
Fusion	Breast	TAF4--CDH22	HLA-B15:01	FQLPPGTSVM	0.9996	0.9756	0.5795	32.2	0.1488	NA	1/787	1/4234
Fusion	Breast	TAF4--CDH22	HLA-C03:03	FQLPPGTSVM	0.9984	0.9953	0.5312	93.4	0.3475	NA	1/787	1/4234
Fusion	Breast	TAF4--CDH22	HLA-C03:03	FQLPPGTSV	0.7826	0.9951	0.1242	34	0.1556	NA	1/787	1/4234
Fusion	Breast	DDR1--MRPS18B	HLA-C12:03	RAFQAMQVPL	0.996	0.9897	1.1763	195.5	0.8088	NA	1/787	1/4234
Fusion	Breast	DDR1--MRPS18B	HLA-C16:01	QAMQVPLQTL	0.9313	0.992	0.4646	410.8	1.1944	NA	1/787	1/4234
Fusion	Breast	DDR1--MRPS18B	HLA-C16:01	RAFQAMQVPL	0.9904	0.9843	0.9841	81	0.2837	NA	1/787	1/4234
Fusion	Breast	DDR1--MRPS18B	HLA-C16:01	AMQVPLQTL	0.9217	0.9925	0.5723	356	1.0639	NA	1/787	1/4234
Fusion	Breast	MRPL48--DTX4	HLA-B44:03	EEVLKLLLVAW	0.9996	0.9776	0.4825	241.4	0.2495	NA	1/787	1/4234
Fusion	Breast	MRPL48--DTX4	HLA-B44:03	AEEVLKLLL	0.9961	0.9692	0.1448	426.9	0.3888	NA	1/787	1/4234
Fusion	Breast	SEC16A--QSOX2	HLA-C03:04	CPLPSFQAL	0.9965	0.9811	0.9103	267.5	0.6755	NA	1/787	1/4234
Fusion	Breast	SEC16A--QSOX2	HLA-C03:04	QALKTTPRL	0.9994	0.9867	0.7456	253	0.6532	NA	1/787	1/4234
Fusion	Breast	TLK1--SSB	HLA-B57:01	LSDKESEYYF	0.9985	0.8733	0.2778	492.7	0.7404	NA	1/787	1/4234
Fusion	Breast	ANO1--CYP2R1	HLA-B15:01	YLPSEGTIF	0.9879	0.9534	0.4933	230.6	1.0162	NA	1/787	1/4234
Fusion	Breast	NAXE--RHBG	HLA-A24:02	SWGPSWGSLW	0.9966	0.8613	0.4789	54.7	0.1264	NA	1/787	1/4234
Fusion	Breast	NAXE--RHBG	HLA-A24:02	SWGPSWGSL	0.9342	0.8049	1.0314	444.7	0.6097	NA	1/787	1/4234
Fusion	Breast	NAXE--RHBG	HLA-A24:02	SWGSLWLDL	0.805	0.5422	1.5295	233.7	0.4048	NA	1/787	1/4234
Fusion	Breast	NAXE--RHBG	HLA-B08:01	LPPMKLTEM	0.9944	0.8158	0.2882	495	0.7607	NA	1/787	1/4234
Fusion	Breast	USP22--MMS22L	HLA-C07:01	KRKATTVQL	0.9982	0.5245	0.3283	471.1	0.161	NA	1/787	1/4234
Fusion	Breast	AHNAK--INTS5	HLA-A30:01	AVLRSCPRK	0.9861	0.9393	0.4599	137.2	0.6738	NA	1/787	1/4234
Fusion	Breast	AHNAK--INTS5	HLA-C16:01	SVSTPNAVL	0.8658	0.9813	0.3352	154.1	0.5251	NA	1/787	1/4234
Fusion	Breast	AHNAK--INTS5	HLA-C16:01	VSVSTPNAV	0.5668	0.9877	0.6929	149.8	0.5112	NA	1/787	1/4234
Fusion	Breast	HECTD2--PCGF5	HLA-B44:03	SELLSFASLL	0.976	0.9571	1.1738	44.9	0.0519	NA	1/787	1/4234
Fusion	Breast	HECTD2--PCGF5	HLA-C16:01	FASLLSGWPF	0.9796	0.9838	1.3176	393.6	1.1506	NA	1/787	1/4234
Fusion	Breast	HECTD2--PCGF5	HLA-B44:03	SELLSFASL	0.9905	0.9345	0.348	129.3	0.1511	NA	1/787	1/4234
Fusion	Breast	HECTD2--PCGF5	HLA-C16:01	ASLLSGWPF	0.6492	0.9871	1.2147	265.3	0.8517	NA	1/787	1/4234
Fusion	Breast	HECTD2--PCGF5	HLA-C16:01	LSGWPFVSV	0.6099	0.9842	0.645	450.4	1.282	NA	1/787	1/4234
Fusion	Breast	HECTD2--PCGF5	HLA-C16:01	SGWPFVSVI	0.6241	0.9695	0.7081	91.3	0.3195	NA	1/787	1/4234
Fusion	Breast	HECTD2--PCGF5	HLA-C16:01	SVIPYGTAV	0.8821	0.9606	0.0848	26.4	0.0669	NA	1/787	1/4234
Fusion	Breast	HECTD2--PCGF5	HLA-C16:01	VSVSELLSF	0.8008	0.9825	0.3941	171.6	0.5777	NA	1/787	1/4234
Fusion	Breast	LNX1--GABRB1	HLA-A30:01	QTRITTTAA	0.9209	0.8548	0.9642	15.3	0.0495	NA	1/787	1/4234
Fusion	Breast	NF1--SUZ12	HLA-B08:01	HPAIRMAPL	0.9973	0.5892	0.4277	26.1	0.0443	NA	1/787	1/4234
Fusion	Breast	NF1--SUZ12	HLA-C03:04	FAAYVYWFL	0.9919	0.9899	0.9275	102.9	0.3698	NA	1/787	1/4234
Fusion	Breast	NF1--SUZ12	HLA-C03:04	RMAPLVSSF	0.9649	0.9847	0.1963	111.9	0.389	NA	1/787	1/4234
Fusion	Breast	SSH2--NDUFS4	HLA-A68:01	EIGTGPDSR	0.9868	0.8775	0.4753	276.9	1.6499	NA	1/787	1/4234
Fusion	Breast	MED1--GDPD1	HLA-B35:01	YAVSELVKRY	0.998	0.8642	0.4737	260.2	0.5889	NA	1/787	1/4234
Fusion	Breast	NF1--NLE1	HLA-A03:01	AAMWPAAPR	0.7953	0.8914	0.0583	264.2	0.778	NA	1/787	1/4234
Fusion	Breast	NF1--NLE1	HLA-B35:01	APSKSGELM	0.8516	0.7606	0.5723	452.7	0.8277	NA	1/787	1/4234
Fusion	Breast	NF1--NLE1	HLA-B35:01	WPAAPRMAV	0.9453	0.8753	0.2978	106.9	0.3335	NA	1/787	1/4234
Fusion	Breast	RARA--MYO1D	HLA-A03:01	KGASIRSLEK	0.9917	0.5117	1.388	247.1	0.7454	NA	1/787	1/4234
Fusion	Breast	THSD4--THAP10	HLA-B07:02	RPRHRSVGIQA	0.9998	0.5448	0.1596	83.2	0.2574	NA	1/787	1/4234
Fusion	Breast	CDC5L--PITPNC1	HLA-B44:03	LEYKIGQLY	0.9934	0.6355	0.0383	36.6	0.0417	NA	1/787	1/4234
Fusion	Breast	CREB1--FASTKD2	HLA-C16:01	SSWKLWLVL	0.9257	0.9935	0.8087	89.6	0.3136	NA	1/787	1/4234
Fusion	Breast	HEATR6--FGF10	HLA-A68:01	RAPVFLASWR	0.909	0.6328	1.1679	158.6	1.1945	NA	1/787	1/4234
Fusion	Breast	HEATR6--GALNT13	HLA-A68:01	EGSGVAPER	0.9963	0.6583	0.3769	119.5	1.0176	NA	1/787	1/4234
Fusion	Breast	HEATR6--GALNT13	HLA-C16:01	GVAPERLTL	0.9867	0.9817	0.276	139.4	0.4773	NA	1/787	1/4234
Fusion	Breast	HELLS--TBC1D12	HLA-B44:03	SEVQGMSFI	0.9663	0.8551	0.2856	127	0.1483	NA	1/787	1/4234
Fusion	Breast	HELLS--TBC1D12	HLA-C16:01	SSEVQGMSF	0.6012	0.9625	0.4438	353.5	1.0591	NA	1/787	1/4234
Fusion	Breast	LARP4--PTPRM	HLA-A68:01	QIYDVSGNWPR	0.9952	0.6565	0.0697	28.3	0.3491	NA	1/787	1/4234
Fusion	Breast	LARP4--PTPRM	HLA-A68:01	YDVSGNWPR	0.816	0.6122	0.4825	249.9	1.5563	NA	1/787	1/4234
Fusion	Breast	PIKFYVE--BPTF	HLA-B44:03	TEGYGGPHKW	0.9979	0.9799	0.2239	34.8	0.0388	NA	1/787	1/4234
Fusion	Breast	PIKFYVE--BPTF	HLA-B44:03	AEADSDCNFHY	0.9994	0.9073	0.1227	176.6	0.1942	NA	1/787	1/4234
Fusion	Breast	PIKFYVE--BPTF	HLA-B44:03	AEADSDCNF	0.9879	0.9535	0.4986	144.1	0.167	NA	1/787	1/4234
Fusion	Breast	TTC21B--SCN3A	HLA-C16:01	HALAHEPGF	0.5392	0.988	0.4246	458.8	1.2995	NA	1/787	1/4234
Fusion	Breast	FNTB--RAB15	HLA-C03:04	TSIEQVLTL	0.9999	0.9886	0.0267	21.2	0.0908	NA	1/787	1/4234
Fusion	Breast	DAP--SNX9	HLA-B07:02	SPRFPGFAKP	0.997	0.5714	0.3152	342	0.6697	NA	1/787	1/4234
Fusion	Breast	DAP--SNX9	HLA-B07:02	SPRFPGFAK	0.9796	0.5795	0.0631	466.4	0.7968	NA	1/787	1/4234
Fusion	Breast	MAN1A2--VANGL1	HLA-B08:01	WAMVNLKSI	0.9511	0.92	1.221	189	0.3354	NA	1/787	1/4234
Fusion	Breast	ARRB1--RASSF3	HLA-B27:05	RRKPTVTSAK	0.9993	0.5749	0.7514	140.7	0.4633	NA	1/787	1/4234
Fusion	Breast	ARRB1--RASSF3	HLA-B27:05	KRMLRKRRK	0.9951	0.8491	0.9014	112.3	0.3742	NA	1/787	1/4234
Fusion	Breast	DHCR7--USP15	HLA-A02:01	YLYTLQTQV	0.9962	0.765	0.0014	5.5	0.0429	NA	1/787	1/4234
Fusion	Breast	PPM1H--SLC6A15	HLA-A02:01	YLAVQGTGL	0.9577	0.7358	0.1656	81.5	0.9204	NA	1/787	1/4234
Fusion	Breast	SRGAP1--GAB2	HLA-B27:05	GRNAGLSCGV	0.9992	0.5886	1.0757	285.8	0.8207	NA	1/787	1/4234
Fusion	Breast	C16orf45--POMT2	HLA-B27:05	GRNADRSCWL	0.9985	0.8123	1.1472	451.2	1.1533	NA	1/787	1/4234
Fusion	Breast	BTBD7--UBR7	HLA-C05:01	QSDYLQNTM	0.9999	0.9816	0.2183	229.5	0.1034	NA	1/787	1/4234
Fusion	Breast	PTPA--NUP188	HLA-C05:01	KLDETERQV	0.9999	0.9674	0.1336	424.3	0.1693	NA	1/787	1/4234
Fusion	Breast	ADAMTS10--MLLT1	HLA-C03:03	LAIMNICTV	0.9628	0.9874	0.3217	19.1	0.0815	NA	1/787	1/4234
Fusion	Breast	LONP1--ZNF780B	HLA-B15:03	LQQRLGREI	0.5306	0.5332	1.3629	110.3	1.508	NA	1/787	1/4234
Fusion	Breast	UBAP1--NFX1	HLA-B15:03	QQRHSDATFM	0.8725	0.5579	0.9595	53.7	0.9166	NA	1/787	1/4234
Fusion	Breast	UBAP1--NFX1	HLA-B15:03	QQRHSDATF	0.6778	0.6242	0.1947	3.5	0.0183	NA	1/787	1/4234
Fusion	Breast	ADAMTS13--LHX2	HLA-B07:02	RPRSSPTPRS	0.995	0.5442	1.2692	141.2	0.3756	NA	1/787	1/4234
Fusion	Breast	ADAMTS13--LHX2	HLA-B07:02	SPTPRSAPPA	0.9982	0.6827	0.6758	163.6	0.4122	NA	1/787	1/4234
Fusion	Breast	ADAMTS13--LHX2	HLA-B07:02	RPRSSPTPRSA	0.9999	0.6153	0.2239	44.9	0.1581	NA	1/787	1/4234
Fusion	Breast	DBF4B--DYNC2H1	HLA-B15:01	RLRAPDLDFM	0.9972	0.8452	1.2627	426.4	1.5418	NA	1/787	1/4234
Fusion	Breast	DBF4B--DYNC2H1	HLA-B15:01	RLRAPDLDF	0.9964	0.8808	0.1336	35.5	0.174	NA	1/787	1/4234
Fusion	Breast	KANSL1--LAYN	HLA-C03:03	LAFPDGQPV	0.9918	0.9862	0.3199	6.6	0.0246	NA	1/787	1/4234
Fusion	Breast	PGAP3--IFI35	HLA-C03:03	VAFAWALHAL	0.9996	0.9957	0.4529	68.3	0.2756	NA	1/787	1/4234
Fusion	Breast	PGAP3--IFI35	HLA-C03:03	FAWALHAL	1	0.9963	0.2071	77.3	0.304	NA	1/787	1/4234
Fusion	Breast	THRA--GOSR1	HLA-B15:01	SLKTSMSGLY	0.9998	0.8633	0.8247	74.9	0.4012	NA	1/787	1/4234
Fusion	Breast	WDR70--GHR	HLA-A03:01	RLFHATGQMR	0.997	0.5286	0.2793	65.8	0.2485	NA	1/787	1/4234
Fusion	Breast	KANSL1--OSBPL7	HLA-B58:01	PAASPSTLSW	0.9901	0.8701	0.645	33	0.2108	NA	1/787	1/4234
Fusion	Breast	KANSL1--OSBPL7	HLA-B58:01	EPAASPSTLSW	0.9785	0.8183	1.182	154	0.6432	NA	1/787	1/4234
Fusion	Breast	KANSL1--OSBPL7	HLA-B58:01	ASPSTLSW	0.9986	0.9416	0.6252	162.9	0.6678	NA	1/787	1/4234
Fusion	Breast	KANSL1--OSBPL7	HLA-B58:01	AASPSTLSW	0.999	0.9754	0.0084	4.9	0.0159	NA	1/787	1/4234
Fusion	Breast	KANSL1--OSBPL7	HLA-C03:02	AASPSTLSW	0.8877	0.9744	0.0734	106.3	0.4702	NA	1/787	1/4234
Fusion	Breast	KANSL1--OSBPL7	HLA-C03:02	LSRPAMQSL	0.9978	0.9567	0.2446	44.9	0.2195	NA	1/787	1/4234
Fusion	Breast	KANSL1--OSBPL7	HLA-C03:02	LSWGRPTSV	0.9783	0.96	0.2745	88.8	0.4112	NA	1/787	1/4234
Fusion	Breast	KANSL1--OSBPL7	HLA-C03:02	VSRSPTTPL	0.9873	0.9694	0.3898	61.7	0.3027	NA	1/787	1/4234
Fusion	Breast	NFE2L1--ENG	HLA-B44:03	MEMQHLKCTI	0.9907	0.8465	1.3243	97.4	0.113	NA	1/787	1/4234
Fusion	Breast	NFE2L1--ENG	HLA-B58:01	MSIMEMQHL	0.9914	0.802	0.8655	83.9	0.4217	NA	1/787	1/4234
Fusion	Breast	NFE2L1--ENG	HLA-C03:02	MSIMEMQHL	0.9996	0.9776	0.8884	56.4	0.2752	NA	1/787	1/4234
Fusion	Breast	TMCC1--ALDH1L1	HLA-B44:03	AERVLPTLLL	0.81	0.8317	1.3803	356.2	0.3436	NA	1/787	1/4234
Fusion	Breast	TMCC1--ALDH1L1	HLA-C07:01	ERVLPTLLL	0.9982	0.5718	0.585	366.5	0.1302	NA	1/787	1/4234
Fusion	Breast	PLEKHM2--ZSWIM5	HLA-C12:03	ISLSVKKAF	0.5762	0.9367	0.5904	410.8	1.3623	NA	1/787	1/4234
Fusion	Breast	TTC19--TOM1L2	HLA-B18:01	EELWPPLPH	0.9868	0.9775	0.5038	286.9	0.1904	NA	1/787	1/4234
Fusion	Breast	MFSD10--ATAD3B	HLA-A02:01	FQFSRFMLVL	0.9792	0.5825	1.5528	74	0.8604	NA	1/787	1/4234
Fusion	Breast	MFSD10--ATAD3B	HLA-A02:01	FQFSRFMLV	0.9969	0.5573	0.057	4.8	0.0286	NA	1/787	1/4234
Fusion	Breast	P4HTM--MEIOB	HLA-A02:01	TLSLKPLLFV	0.9721	0.5787	0.637	51.8	0.6491	NA	1/787	1/4234
Fusion	Breast	SHANK2--RBM4B	HLA-A11:01	GSYDSFDTSR	0.9954	0.5246	0.786	62	0.3779	NA	1/787	1/4234
Fusion	Breast	POLR1C--MDGA1	HLA-A02:01	RLFEYRNQA	0.9795	0.5889	0.1086	46.2	0.589	NA	1/787	1/4234
Fusion	Breast	POLR1C--MDGA1	HLA-A02:05	NQAPAQAQI	0.9336	0.5062	0.1098	254.5	1.4721	NA	1/787	1/4234
Fusion	Breast	ARSG--PRKCA	HLA-C03:04	FIQRASLLF	0.9927	0.9847	1.8644	410.6	0.874	NA	1/787	1/4234
Fusion	Breast	BPTF--ARSG	HLA-A33:03	HFCGRPSAQR	0.971	0.687	0.4614	76.4	0.2989	NA	1/787	1/4234
Fusion	Breast	BPTF--ARSG	HLA-A33:03	LTLPGFLAHR	0.9789	0.5156	0.1886	65.7	0.2556	NA	1/787	1/4234
Fusion	Breast	BPTF--ARSG	HLA-B58:01	GAAAGGLRHW	0.9985	0.9905	0.1641	28.3	0.1868	NA	1/787	1/4234
Fusion	Breast	BPTF--ARSG	HLA-A33:03	DNRQMASWTPR	0.9922	0.7825	0.7881	295.5	0.8653	NA	1/787	1/4234
Fusion	Breast	BPTF--ARSG	HLA-B58:01	LAHRPAWPSQW	0.9979	0.9562	0.5686	32	0.2055	NA	1/787	1/4234
Fusion	Breast	BPTF--ARSG	HLA-B58:01	RGAAAGGLRHW	0.9995	0.9786	0.1369	64.7	0.3489	NA	1/787	1/4234
Fusion	Breast	BPTF--ARSG	HLA-A33:03	TLPGFLAHR	0.9671	0.6921	0.1401	48.1	0.1807	NA	1/787	1/4234
Fusion	Breast	BPTF--ARSG	HLA-B58:01	AAAGGLRHW	0.9984	0.9938	0.0226	29.9	0.1944	NA	1/787	1/4234
Fusion	Breast	BPTF--ARSG	HLA-B58:01	MASWTPRLL	0.9702	0.8823	0.2165	141.4	0.6061	NA	1/787	1/4234
Fusion	Breast	BPTF--ARSG	HLA-B58:01	RLLSPQLPW	0.9791	0.9875	0.4001	17.9	0.1177	NA	1/787	1/4234
Fusion	Breast	BPTF--ARSG	HLA-C03:04	MASWTPRLL	0.9998	0.9851	0.0131	16.6	0.0683	NA	1/787	1/4234
Fusion	Breast	BPTF--ARSG	HLA-C07:01	LRHWDNRQM	0.9925	0.8192	0.4456	254.1	0.0924	NA	1/787	1/4234
Fusion	Breast	TAF2--ALDH16A1	HLA-C03:04	FQRKSVVVF	0.8047	0.9712	1.0576	433.3	0.9046	NA	1/787	1/4234
Fusion	Breast	ZNF415--EIF3H	HLA-B58:01	KTVQYQMEM	0.9923	0.9554	0.1514	62.2	0.3384	NA	1/787	1/4234
Fusion	Breast	ZNF415--EIF3H	HLA-C03:04	KTVQYQMEM	0.9815	0.9856	0.2825	150.1	0.4689	NA	1/787	1/4234
Fusion	Breast	RNF40--PLK1	HLA-C12:02	MTQHASSSTM	0.9949	0.9601	1.0314	476.7	0.6622	NA	1/787	1/4234
Fusion	Breast	RNF40--PLK1	HLA-B08:01	YKAWRTPCL	0.6157	0.618	1.3803	268.6	0.4591	NA	1/787	1/4234
Fusion	Breast	RNF40--PLK1	HLA-C07:01	VRWSTATSV	0.9884	0.593	0.4018	355.3	0.1268	NA	1/787	1/4234
Fusion	Breast	RNF40--PLK1	HLA-C12:02	HASSSTMMV	0.5145	0.9752	0.6616	215.1	0.3096	NA	1/787	1/4234
Fusion	Breast	RNF40--PLK1	HLA-C12:02	ITAWGCSSM	0.9362	0.9808	0.6996	256.6	0.3744	NA	1/787	1/4234
Fusion	Breast	RNF40--PLK1	HLA-C12:02	STALGISSV	0.5886	0.9764	0.6333	344.4	0.4869	NA	1/787	1/4234
Fusion	Breast	RNF40--PLK1	HLA-C12:02	TALGISSVI	0.9568	0.9624	0.645	498	0.6871	NA	1/787	1/4234
Fusion	Breast	RNF40--PLK1	HLA-C12:02	TQHASSSTM	0.9904	0.9473	0.786	291.8	0.4227	NA	1/787	1/4234
Fusion	Breast	RNF40--PLK1	HLA-C12:02	WTIRTSTAL	0.9818	0.9629	0.9405	67.3	0.0813	NA	1/787	1/4234
Fusion	Breast	AGO2--PCMTD1	HLA-B15:03	NRFEFCEPAF	0.981	0.7851	0.6891	157.6	1.9166	NA	1/787	1/4234
Fusion	Breast	BRWD1--ABCA10	HLA-C02:10	SSVRHILTL	0.9206	0.967	0.0441	384.6	0.249	NA	1/787	1/4234
Fusion	Breast	DAD1--RAB2B	HLA-B35:01	HPFLLQGSSW	0.9918	0.839	0.0315	465.4	0.8425	NA	1/787	1/4234
Fusion	Breast	DAD1--RAB2B	HLA-A68:02	FILAGWARI	0.8425	0.9802	1.0705	386	1.7309	NA	1/787	1/4234
Fusion	Breast	DAD1--RAB2B	HLA-A68:02	GSSWSTAGV	0.9272	0.6402	1.1277	82.1	0.6302	NA	1/787	1/4234
Fusion	Breast	DAD1--RAB2B	HLA-A68:02	LPFYHPFLL	0.5701	0.5239	0.4737	298	1.4685	NA	1/787	1/4234
Fusion	Breast	DAD1--RAB2B	HLA-B15:03	AGWARILPF	0.9486	0.9398	0.4845	11.7	0.1888	NA	1/787	1/4234
Fusion	Breast	DAD1--RAB2B	HLA-B15:03	RILPFYHPF	0.9597	0.8744	0.2925	9.7	0.1482	NA	1/787	1/4234
Fusion	Breast	DAD1--RAB2B	HLA-B15:03	WSTAGVRHY	0.6868	0.6477	1.1277	120.5	1.5992	NA	1/787	1/4234
Fusion	Breast	DAD1--RAB2B	HLA-B35:01	LPFYHPFLL	0.9847	0.8037	0.0142	10.8	0.0398	NA	1/787	1/4234
Fusion	Breast	UBE3C--DNAJB6	HLA-B15:03	GRFSLRSVDF	0.9273	0.5952	0.4548	104.4	1.4571	NA	1/787	1/4234
Fusion	Breast	UBE3C--DNAJB6	HLA-A68:02	RTSLGIEGV	0.855	0.6554	0.7151	442.3	1.8731	NA	1/787	1/4234
Fusion	Breast	LRP12--LAPTM4B	HLA-C03:04	GVYGAATPV	0.8297	0.9795	1.4107	175	0.5155	NA	1/787	1/4234
Fusion	Breast	LRP12--LAPTM4B	HLA-C12:03	GVYGAATPV	0.8862	0.984	1.0168	73.1	0.343	NA	1/787	1/4234
Fusion	Breast	ELL--INSR	HLA-B08:01	CMSWRIAL	0.9994	0.6024	1.0655	53	0.0939	NA	1/787	1/4234
Fusion	Breast	ZFC3H1--SHISA9	HLA-C03:04	TSSPDATQM	0.9991	0.9357	0.5534	322.4	0.7542	NA	1/787	1/4234
Fusion	Breast	SEC14L1--TEX2	HLA-A02:02	ELIMALPEV	0.9927	0.5001	0.1354	32.5	0.7898	NA	1/787	1/4234
Fusion	Breast	ABHD2--ACAN	HLA-B58:01	MFTYGILPTW	0.9303	0.9815	1.4985	5.4	0.0181	NA	1/787	1/4234
Fusion	Breast	ABHD2--ACAN	HLA-B58:01	RMFTYGILPTW	0.9925	0.9789	0.3124	12.7	0.0813	NA	1/787	1/4234
Fusion	Breast	ABHD2--ACAN	HLA-B58:01	FTYGILPTW	0.9984	0.9917	0.0481	5.4	0.0182	NA	1/787	1/4234
Fusion	Breast	ABHD2--ACAN	HLA-C03:02	FTYGILPTW	0.6673	0.9923	0.3254	53.2	0.257	NA	1/787	1/4234
Fusion	Breast	ASXL1--XKR7	HLA-A74:01	RLLLAHHGLR	0.986	0.6279	0.5347	196.3	0.082	NA	1/787	1/4234
Fusion	Breast	ASXL1--XKR7	HLA-A74:01	SLFTLKVPAR	0.9832	0.8195	0.3698	271.8	0.1242	NA	1/787	1/4234
Fusion	Breast	ASXL1--XKR7	HLA-B58:01	AAQPAGAPRW	0.9975	0.9929	0.0671	35.8	0.2249	NA	1/787	1/4234
Fusion	Breast	ASXL1--XKR7	HLA-B58:01	CLLLSPAPQW	0.9653	0.9878	1.5935	322.2	1.0923	NA	1/787	1/4234
Fusion	Breast	ASXL1--XKR7	HLA-B58:01	WAHAGSPGTW	0.9946	0.9706	0.4347	20.2	0.1317	NA	1/787	1/4234
Fusion	Breast	ASXL1--XKR7	HLA-B81:01	RPVPGAAEPL	0.7968	0.5377	0.4675	114.8	0.0494	NA	1/787	1/4234
Fusion	Breast	ASXL1--XKR7	HLA-C03:02	LARGAAAAPL	0.9621	0.9849	1.3074	412.2	1.2812	NA	1/787	1/4234
Fusion	Breast	ASXL1--XKR7	HLA-A33:03	LVRHDLLGHPR	0.9758	0.7091	0.9129	469.1	1.1896	NA	1/787	1/4234
Fusion	Breast	ASXL1--XKR7	HLA-A74:01	RLQALFWHLHR	0.9862	0.5974	0.834	224.1	0.0974	NA	1/787	1/4234
Fusion	Breast	ASXL1--XKR7	HLA-B58:01	AAAQPAGAPRW	0.9996	0.9908	0.1898	108.1	0.5003	NA	1/787	1/4234
Fusion	Breast	ASXL1--XKR7	HLA-A33:03	AAQPAGAPR	0.9571	0.6751	0.2526	276.6	0.8216	NA	1/787	1/4234
Fusion	Breast	ASXL1--XKR7	HLA-A33:03	EGAAGLAGR	0.7534	0.9269	0.193	102.1	0.3855	NA	1/787	1/4234
Fusion	Breast	ASXL1--XKR7	HLA-A33:03	HLHRGPLVR	0.8213	0.8461	0.555	488.4	1.2235	NA	1/787	1/4234
Fusion	Breast	ASXL1--XKR7	HLA-A33:03	LAGDLPAQR	0.8861	0.8675	0.5195	406.9	1.0789	NA	1/787	1/4234
Fusion	Breast	ASXL1--XKR7	HLA-B58:01	GAAAAPLLL	0.8611	0.9594	1.3416	240.2	0.887	NA	1/787	1/4234
Fusion	Breast	ASXL1--XKR7	HLA-B58:01	LLLSPAPQW	0.9604	0.9387	0.3956	45.5	0.2679	NA	1/787	1/4234
Fusion	Breast	ASXL1--XKR7	HLA-B58:01	RQRLQALFW	0.8907	0.9398	0.4902	211.6	0.8098	NA	1/787	1/4234
Fusion	Breast	ASXL1--XKR7	HLA-B81:01	RARPAAGPL	0.551	0.5306	1.388	217.5	0.0859	NA	1/787	1/4234
Fusion	Breast	ASXL1--XKR7	HLA-C03:02	GAAAAPLLL	0.9967	0.9724	0.2253	112.8	0.4898	NA	1/787	1/4234
Fusion	Breast	ASXL1--XKR7	HLA-C03:02	RARPAAGPL	0.8632	0.9803	0.6737	48.4	0.2349	NA	1/787	1/4234
Fusion	Breast	BPTF--NOL11	HLA-B81:01	TPVMVQPAV	0.6353	0.8914	0.5815	333.9	0.1283	NA	1/787	1/4234
Fusion	Breast	DGUOK--C2orf78	HLA-B58:01	LSIEGNIEYF	0.9987	0.6778	0.3235	64.6	0.3484	NA	1/787	1/4234
Fusion	Breast	DGUOK--C2orf78	HLA-C03:02	LSIEGNIEYF	0.9997	0.9507	0.4232	180.2	0.7144	NA	1/787	1/4234
Fusion	Breast	DGUOK--C2orf78	HLA-C03:02	RLSIEGNIEY	0.8256	0.9435	0.5982	484.4	1.4289	NA	1/787	1/4234
Fusion	Breast	DGUOK--C2orf78	HLA-B58:01	LSIEGNIEY	0.9783	0.6431	0.1704	143.2	0.6114	NA	1/787	1/4234
Fusion	Breast	DGUOK--C2orf78	HLA-C03:02	LSIEGNIEY	0.9775	0.9411	0.0822	15.3	0.0596	NA	1/787	1/4234
Fusion	Breast	DNASE2--TRMT1	HLA-A33:03	LLMLPLTVQR	0.9272	0.5545	0.9913	273.5	0.8143	NA	1/787	1/4234
Fusion	Breast	DNASE2--TRMT1	HLA-A33:03	TSAATPTAPR	0.986	0.5081	0.4646	130.2	0.4755	NA	1/787	1/4234
Fusion	Breast	DNASE2--TRMT1	HLA-A74:01	LLMLPLTVQR	0.916	0.8772	0.5619	357	0.1641	NA	1/787	1/4234
Fusion	Breast	DNASE2--TRMT1	HLA-B81:01	RPPLDLGLPL	0.7777	0.5181	1.2968	137.6	0.0584	NA	1/787	1/4234
Fusion	Breast	DNASE2--TRMT1	HLA-A74:01	KLWRRDAGCFR	0.9887	0.7429	0.1098	239.9	0.1071	NA	1/787	1/4234
Fusion	Breast	DNASE2--TRMT1	HLA-A74:01	KMWPSGLPGSR	0.999	0.9225	0.057	321.4	0.1486	NA	1/787	1/4234
Fusion	Breast	DNASE2--TRMT1	HLA-A33:03	HFLARGLRR	0.9732	0.5725	0.3542	44.1	0.1655	NA	1/787	1/4234
Fusion	Breast	DNASE2--TRMT1	HLA-A33:03	LMLPLTVQR	0.971	0.5206	0.2009	96.2	0.3676	NA	1/787	1/4234
Fusion	Breast	DNASE2--TRMT1	HLA-A74:01	LMLPLTVQR	0.9637	0.882	0.1448	228.5	0.1005	NA	1/787	1/4234
Fusion	Breast	DNASE2--TRMT1	HLA-B58:01	GARRPTKLW	0.9881	0.9164	0.6117	245.8	0.9014	NA	1/787	1/4234
Fusion	Breast	GMEB2--STMN3	HLA-C03:02	YARDLAAY	0.9949	0.9587	0.3685	205.6	0.7822	NA	1/787	1/4234
Fusion	Breast	MAPK1--YDJC	HLA-A74:01	GMVWCGRSSR	0.967	0.6932	0.6429	405.9	0.1876	NA	1/787	1/4234
Fusion	Breast	MAPK1--YDJC	HLA-B58:01	IGEGAYGMVW	0.9968	0.9944	0.9381	151	0.6347	NA	1/787	1/4234
Fusion	Breast	MAPK1--YDJC	HLA-A33:03	EGAYGMVWCGR	0.9194	0.5441	0.8515	465.9	1.1841	NA	1/787	1/4234
Fusion	Breast	MAPK1--YDJC	HLA-A74:01	MVWCGRSSR	0.9912	0.6215	0.3352	119.8	0.0393	NA	1/787	1/4234
Fusion	Breast	PTPRZ1--UBE2H	HLA-C03:02	FPISDLTNIF	0.9986	0.9809	0.9381	327.7	1.1049	NA	1/787	1/4234
Fusion	Breast	PTPRZ1--UBE2H	HLA-C03:02	FPISDLTNI	0.8929	0.986	1.5385	262.6	0.9384	NA	1/787	1/4234
Fusion	Breast	RAI1--SPNS2	HLA-C03:02	YPCASDAVF	0.9271	0.9369	1.7612	278.6	0.9798	NA	1/787	1/4234
Fusion	Breast	SNX27--SCNM1	HLA-A33:03	VLWMDPRWTR	0.9781	0.8622	0.5058	54.9	0.2056	NA	1/787	1/4234
Fusion	Breast	SNX27--SCNM1	HLA-A74:01	VLWMDPRWTR	0.9683	0.9765	0.3137	164.9	0.0632	NA	1/787	1/4234
Fusion	Breast	SNX27--SCNM1	HLA-A33:03	FVLWMDPRWTR	0.9893	0.8543	0.6996	31.7	0.1127	NA	1/787	1/4234
Fusion	Breast	SNX27--SCNM1	HLA-A33:03	LWMDPRWTR	0.9803	0.7712	0.1855	32.6	0.1154	NA	1/787	1/4234
Fusion	Breast	SNX27--SCNM1	HLA-B58:01	FVLWMDPRW	0.9769	0.9964	0.3753	20.6	0.1345	NA	1/787	1/4234
Fusion	Breast	ARAP1--MOGAT2	HLA-B07:02	CIAKPRSAL	0.9956	0.605	0.3837	36.6	0.1256	NA	1/787	1/4234
Fusion	Breast	ARAP1--MOGAT2	HLA-B07:02	KPRSALWAS	0.9965	0.6794	0.9036	66.9	0.2164	NA	1/787	1/4234
Fusion	Breast	EMSY--MYO7A	HLA-A26:01	EVAFPLLGTL	0.9928	0.7807	0.9152	398.9	0.1753	NA	1/787	1/4234
Fusion	Breast	EMSY--MYO7A	HLA-C02:02	VAFPLLGTL	0.8211	0.9915	0.3925	410.1	0.2711	NA	1/787	1/4234
Fusion	Breast	PAK1--KCTD14	HLA-C07:02	KYMSFTDVY	0.5425	0.7931	0.0214	309.2	0.2039	NA	1/787	1/4234
Fusion	Breast	P4HB--CPB1	HLA-B35:01	LPFSWTVVSM	0.9974	0.9473	0.3254	14.3	0.0565	NA	1/787	1/4234
Fusion	Breast	P4HB--CPB1	HLA-B35:01	LPFSWTVVS	0.9576	0.9494	0.6616	45.5	0.1753	NA	1/787	1/4234
Fusion	Breast	P4HB--CPB1	HLA-B35:01	MPESGFLLH	0.9913	0.9547	0.0618	46.1	0.1781	NA	1/787	1/4234
Fusion	Breast	RNF139--ASPH	HLA-B08:01	QIFLRLFGL	0.9837	0.8026	0.4529	275.8	0.4688	NA	1/787	1/4234
Fusion	Breast	PDXDC1--LMF1	HLA-C16:04	FGSQHQMGL	0.897	0.9792	0.834	135.3	0.3841	NA	1/787	1/4234
Fusion	Breast	SH3GL1--MUM1	HLA-B15:01	KQFYKASQVL	0.9983	0.9345	1.1679	70.2	0.377	NA	1/787	1/4234
Fusion	Breast	SH3GL1--MUM1	HLA-A03:01	QVLARTATSTK	0.9964	0.7382	1.2367	485	1.1867	NA	1/787	1/4234
Fusion	Breast	ATG5--QRSL1	HLA-A02:01	GLQNGLPAV	0.9941	0.5815	0.057	8.1	0.085	NA	1/787	1/4234
Fusion	Breast	ATP5G1--SKAP1	HLA-B58:01	LGFSAPRGRHW	0.9977	0.9217	0.6488	130.7	0.5744	NA	1/787	1/4234
Fusion	Breast	ATP5G1--SKAP1	HLA-C03:03	FISPALVL	1	0.9894	0.033	390	0.8461	NA	1/787	1/4234
Fusion	Breast	ATP5G1--SKAP1	HLA-A02:01	FISPALVLL	0.9925	0.5806	0.0583	13.7	0.1677	NA	1/787	1/4234
Fusion	Breast	ATP5G1--SKAP1	HLA-B58:01	FSAPRGRHW	0.9974	0.8252	0.0861	26	0.1742	NA	1/787	1/4234
Fusion	Breast	ATP5G1--SKAP1	HLA-C03:02	FISPALVLL	0.989	0.9647	0.1977	33.6	0.1589	NA	1/787	1/4234
Fusion	Breast	ATP5G1--SKAP1	HLA-C03:02	FSAPRGRHW	0.703	0.9264	0.348	200.7	0.7699	NA	1/787	1/4234
Fusion	Breast	ATP5G1--SKAP1	HLA-C03:02	LFISPALVL	0.6911	0.9642	0.3413	150.4	0.6068	NA	1/787	1/4234
Fusion	Breast	ATP5G1--SKAP1	HLA-C03:03	FISPALVLL	0.9991	0.9898	0.1168	26.1	0.1148	NA	1/787	1/4234
Fusion	Breast	ATP5G1--SKAP1	HLA-C03:03	LFISPALVL	0.8916	0.9899	0.2636	313.3	0.7418	NA	1/787	1/4234
Fusion	Breast	CLCN3--SMAD1	HLA-A02:01	LLDGDTAVGV	0.9948	0.5422	0.4563	61.3	0.7454	NA	1/787	1/4234
Fusion	Breast	CLCN3--SMAD1	HLA-A02:01	NLLDGDTAVGV	0.9968	0.6931	0.4078	122.9	1.208	NA	1/787	1/4234
Fusion	Breast	CLCN3--SMAD1	HLA-A02:01	AVGVHLYYV	0.9533	0.751	0.0465	23.5	0.3226	NA	1/787	1/4234
Fusion	Breast	CLCN3--SMAD1	HLA-B15:01	TAVGVHLYY	0.9887	0.9713	0.033	248.2	1.074	NA	1/787	1/4234
Fusion	Breast	CLCN3--SMAD1	HLA-B58:01	TAVGVHLYY	0.9919	0.9862	0.0282	154.3	0.6441	NA	1/787	1/4234
Fusion	Breast	CLCN3--SMAD1	HLA-C03:02	TAVGVHLYY	0.9606	0.9867	0.0073	46.8	0.2284	NA	1/787	1/4234
Fusion	Breast	COX6B1--SERTAD1	HLA-B58:01	GSRLLVARSW	0.9973	0.9874	1.0705	31.7	0.2038	NA	1/787	1/4234
Fusion	Breast	FAM160A1--IL15	HLA-A02:01	VLAPALHKNV	0.9717	0.7205	1.0863	27.8	0.3765	NA	1/787	1/4234
Fusion	Breast	ADK--KCNMA1	HLA-B15:01	AQVVLVFAL	0.9634	0.9327	0.9036	287.3	1.1972	NA	1/787	1/4234
Fusion	Breast	ADK--KCNMA1	HLA-B15:01	KVAQVVLVF	0.9958	0.8114	0.0142	27.7	0.1276	NA	1/787	1/4234
Fusion	Breast	GRHL2--FAM213A	HLA-B15:01	MSQESDKAF	0.9854	0.7853	1.0266	358.4	1.3936	NA	1/787	1/4234
Fusion	Breast	KARS--WDR59	HLA-B15:01	MQCFLAADSY	0.9997	0.6472	0.7304	14.7	0.038	NA	1/787	1/4234
Fusion	Breast	KARS--WDR59	HLA-A02:01	FLAADSYTS	0.9796	0.5509	1.1763	80.1	0.909	NA	1/787	1/4234
Fusion	Breast	KARS--WDR59	HLA-A02:01	KQLRCLWTV	0.975	0.5135	0.1886	5.6	0.0443	NA	1/787	1/4234
Fusion	Breast	KARS--WDR59	HLA-B27:05	KQLRCLWTV	0.9941	0.6782	1.584	82.8	0.2755	NA	1/787	1/4234
Fusion	Breast	POLR3A--TP53BP2	HLA-A02:01	LVLMGMFLTV	0.9839	0.5216	0.9867	14.4	0.1768	NA	1/787	1/4234
Fusion	Breast	POLR3A--TP53BP2	HLA-B15:01	VLMGMFLTVY	0.9996	0.8746	0.557	19.9	0.0778	NA	1/787	1/4234
Fusion	Breast	POLR3A--TP53BP2	HLA-A02:01	VLMGMFLTV	0.9948	0.5076	0.0073	4.8	0.0289	NA	1/787	1/4234
Fusion	Breast	POLR3A--TP53BP2	HLA-B15:01	LMGMFLTVY	0.998	0.8827	0.5245	47.4	0.2365	NA	1/787	1/4234
Fusion	Breast	PPIF--REEP3	HLA-B27:05	GRVVLEVRWM	0.9996	0.7252	1.0781	189.2	0.5901	NA	1/787	1/4234
Fusion	Breast	PPIF--REEP3	HLA-B27:05	GRVVLEVRWMM	1	0.6255	0.8931	98.6	0.329	NA	1/787	1/4234
Fusion	Breast	RRP12--CRTAC1	HLA-B15:01	TQMSRMLPF	0.9989	0.7943	0.3199	5	0.0076	NA	1/787	1/4234
Fusion	Breast	STK39--MAT1A	HLA-A02:01	SVMQCWMPI	0.9039	0.5269	0.7438	44.3	0.5689	NA	1/787	1/4234
Fusion	Breast	XYLT2--ACSF2	HLA-B15:01	SQNERPWSSSM	0.9999	0.9486	1.3	120.5	0.6126	NA	1/787	1/4234
Fusion	Breast	XYLT2--ACSF2	HLA-B27:05	ARLWASAWR	0.9987	0.8998	0.9297	122.6	0.4054	NA	1/787	1/4234
Fusion	Breast	BAG6--LY6G5C	HLA-B27:09	SRMEAAVLTS	0.999	0.7684	0.891	348.4	1.0901	NA	1/787	1/4234
Fusion	Breast	BAG6--LY6G5C	HLA-B57:01	RMEAAVLTSW	0.9995	0.9905	0.0523	41.3	0.1137	NA	1/787	1/4234
Fusion	Breast	BAG6--LY6G5C	HLA-B27:09	SRMEAAVLTSW	0.999	0.6426	0.037	412.5	1.2042	NA	1/787	1/4234
Fusion	Breast	BAG6--LY6G5C	HLA-B27:09	SRMEAAVL	0.9999	0.7736	0.7749	471.8	1.2917	NA	1/787	1/4234
Fusion	Breast	BAG6--LY6G5C	HLA-B27:09	SRMEAAVLT	0.9961	0.6762	0.9014	229.4	0.838	NA	1/787	1/4234
Fusion	Breast	PDHX--CAT	HLA-B27:09	SRLFWTSTML	0.9995	0.9008	0.5144	12.9	0.0453	NA	1/787	1/4234
Fusion	Breast	PDHX--CAT	HLA-B57:01	LTTGATSRLF	0.9997	0.992	0.4986	314.1	0.526	NA	1/787	1/4234
Fusion	Breast	PDHX--CAT	HLA-B57:01	TTGATSRLFW	0.9999	0.9866	0.2825	42.5	0.1173	NA	1/787	1/4234
Fusion	Breast	PDHX--CAT	HLA-B27:09	MRFTPLCSPDL	0.9999	0.6956	0.9036	33.8	0.1836	NA	1/787	1/4234
Fusion	Breast	PDHX--CAT	HLA-B27:09	SRLFWTSTMLR	0.9989	0.9127	0.9663	399	1.1818	NA	1/787	1/4234
Fusion	Breast	PDHX--CAT	HLA-B57:01	FTPLCSPDLTW	0.9992	0.9923	0.4646	363.3	0.5877	NA	1/787	1/4234
Fusion	Breast	PDHX--CAT	HLA-B57:01	LTTGATSRLFW	0.9999	0.9894	0.0643	51	0.1387	NA	1/787	1/4234
Fusion	Breast	PDHX--CAT	HLA-B27:09	LRMRFTPL	0.9999	0.8339	1.9828	52.6	0.2782	NA	1/787	1/4234
Fusion	Breast	PDHX--CAT	HLA-B27:09	LRMRFTPLC	0.9977	0.8915	1.3416	67.1	0.3486	NA	1/787	1/4234
Fusion	Breast	PDHX--CAT	HLA-B27:09	LRSTLTTGA	0.9969	0.8369	1.9202	492.2	1.3241	NA	1/787	1/4234
Fusion	Breast	PDHX--CAT	HLA-B27:09	SRLFWTSTM	0.9995	0.8641	0.0523	15.5	0.0589	NA	1/787	1/4234
Fusion	Breast	PDHX--CAT	HLA-B27:09	SRTSLRSTL	0.9996	0.8956	0.0778	57.6	0.3038	NA	1/787	1/4234
Fusion	Breast	PDHX--CAT	HLA-B57:01	TGATSRLFW	0.9992	0.9864	0.1821	182.8	0.3581	NA	1/787	1/4234
Fusion	Breast	TRMT11--ICK	HLA-B27:09	FRLPASFIET	0.9988	0.913	1.5753	360.9	1.1131	NA	1/787	1/4234
Fusion	Breast	TRMU--TTC38	HLA-B57:01	HSVIQVGMQW	0.9999	0.9936	0.1821	12.9	0.0174	NA	1/787	1/4234
Fusion	Breast	TRMU--TTC38	HLA-B57:01	RSHSVIQVGM	0.998	0.9631	1.9612	191.2	0.3697	NA	1/787	1/4234
Fusion	Breast	TRMU--TTC38	HLA-B57:01	SHSVIQVGMQW	0.9998	0.9892	0.645	258.3	0.4576	NA	1/787	1/4234
Fusion	Breast	TRMU--TTC38	HLA-B27:09	ARSHSVIQV	0.9994	0.7227	0.0267	147.4	0.6308	NA	1/787	1/4234
Fusion	Breast	TRMU--TTC38	HLA-B57:01	SVIQVGMQW	0.9868	0.9825	0.1168	62.3	0.1641	NA	1/787	1/4234
Fusion	Breast	TTLL7--MCOLN2	HLA-B27:09	QRKNLTNYDL	0.9957	0.8518	0.8087	325.9	1.0485	NA	1/787	1/4234
Fusion	Breast	ANKRD52--PGS1	HLA-C07:02	RRKEAFLSV	0.8583	0.9581	0.1227	240	0.1578	NA	1/787	1/4234
Fusion	Breast	ARFGEF3--TNNI3K	HLA-A32:01	CTWALESRF	0.9284	0.962	1.2968	301	0.4975	NA	1/787	1/4234
Fusion	Breast	B4GALT5--PTGIS	HLA-B07:02	SPGWGMPWTL	0.9866	0.7064	0.6058	157	0.4001	NA	1/787	1/4234
Fusion	Breast	B4GALT5--PTGIS	HLA-A32:01	ASPGWGMPW	0.8254	0.9881	0.8247	315.3	0.5177	NA	1/787	1/4234
Fusion	Breast	B4GALT5--PTGIS	HLA-A32:01	WTWAASPGW	0.7435	0.9955	1.0341	68.2	0.1248	NA	1/787	1/4234
Fusion	Breast	B4GALT5--PTGIS	HLA-C02:02	WAASPGWGM	0.6894	0.9939	0.8004	474.5	0.3277	NA	1/787	1/4234
Fusion	Breast	B4GALT5--PTGIS	HLA-C02:02	YVAPGIGDL	0.8898	0.962	0.1963	146.8	0.069	NA	1/787	1/4234
Fusion	Breast	CAND1--TUSC5	HLA-A32:01	RATWTAPGGW	0.8547	0.9849	1.2465	404.3	0.6361	NA	1/787	1/4234
Fusion	Breast	CAND1--TUSC5	HLA-A32:01	SSSWASSLSW	0.9602	0.9618	1.0366	193.6	0.3426	NA	1/787	1/4234
Fusion	Breast	CAND1--TUSC5	HLA-A32:01	SSWASSLSWW	0.9779	0.9731	1.2968	180.6	0.3212	NA	1/787	1/4234
Fusion	Breast	CAND1--TUSC5	HLA-A24:23	TWTAPGGWAAW	0.9953	0.7452	1.3629	102.8	0.8446	NA	1/787	1/4234
Fusion	Breast	CAND1--TUSC5	HLA-A32:01	ATWTAPGGW	0.922	0.9934	0.3956	161.1	0.2876	NA	1/787	1/4234
Fusion	Breast	CAND1--TUSC5	HLA-A32:01	SSWASSLSW	0.9873	0.965	0.2557	16.5	0.0269	NA	1/787	1/4234
Fusion	Breast	CAND1--TUSC5	HLA-B07:02	APGGWAAWL	0.9918	0.6216	1.1173	198.4	0.4694	NA	1/787	1/4234
Fusion	Breast	CPSF6--MYRFL	HLA-A32:01	RNFWAMTLIW	0.9607	0.993	1.5935	277.5	0.4664	NA	1/787	1/4234
Fusion	Breast	CPSF6--MYRFL	HLA-A32:01	RTQPWTQVCW	0.9973	0.9755	0.0045	104.5	0.1803	NA	1/787	1/4234
Fusion	Breast	CPSF6--MYRFL	HLA-B07:02	RPILHPTHAL	0.9995	0.6121	0.0226	4.5	0.0084	NA	1/787	1/4234
Fusion	Breast	CPSF6--MYRFL	HLA-B07:02	RPILHPTHALL	0.9999	0.5832	0.2499	32.4	0.1147	NA	1/787	1/4234
Fusion	Breast	CPSF6--MYRFL	HLA-B07:02	TPRPILHPTHA	0.9998	0.5718	0.2778	264.2	0.5694	NA	1/787	1/4234
Fusion	Breast	CPSF6--MYRFL	HLA-A32:01	ILHPTHALL	0.84	0.992	0.6137	430.8	0.6717	NA	1/787	1/4234
Fusion	Breast	CPSF6--MYRFL	HLA-A32:01	MVLWRTQPW	0.9726	0.995	0.5741	18.5	0.0309	NA	1/787	1/4234
Fusion	Breast	CPSF6--MYRFL	HLA-A32:01	QLREPMVLW	0.9921	0.9851	0.1807	126.2	0.2194	NA	1/787	1/4234
Fusion	Breast	CPSF6--MYRFL	HLA-A32:01	RNFWAMTLI	0.8634	0.9877	1.4985	385.1	0.6088	NA	1/787	1/4234
Fusion	Breast	CPSF6--MYRFL	HLA-A32:01	TQVCWRNFW	0.9492	0.965	0.8607	253.3	0.4315	NA	1/787	1/4234
Fusion	Breast	CPSF6--MYRFL	HLA-B07:02	RPILHPTHA	0.9974	0.5148	0.0697	130	0.3566	NA	1/787	1/4234
Fusion	Breast	CPSF6--MYRFL	HLA-B07:02	TPRPILHPT	0.9975	0.6732	0.2396	38	0.1319	NA	1/787	1/4234
Fusion	Breast	CPSF6--MYRFL	HLA-C02:02	ILHPTHALL	0.5015	0.9702	0.4769	315.3	0.1887	NA	1/787	1/4234
Fusion	Breast	CPSF6--MYRFL	HLA-C07:02	ILHPTHALL	0.58	0.9777	0.721	469	0.3062	NA	1/787	1/4234
Fusion	Breast	CPSF6--MYRFL	HLA-C07:02	WRNFWAMTL	0.9455	0.9857	0.5904	26.8	0.0098	NA	1/787	1/4234
Fusion	Breast	MCM6--DARS	HLA-A32:01	SLFPTIHGL	0.8897	0.8113	0.0121	125.1	0.217	NA	1/787	1/4234
Fusion	Breast	NMT2--ITGA8	HLA-C07:02	YRLPDGFRPL	0.994	0.9718	0.4078	245.7	0.1615	NA	1/787	1/4234
Fusion	Breast	NMT2--ITGA8	HLA-A32:01	KLYRLPDGF	0.9651	0.8569	0.2543	29.1	0.0536	NA	1/787	1/4234
Fusion	Breast	PHF20--DLGAP4	HLA-A32:01	KALDFWTGL	0.9817	0.9928	0.1625	169.8	0.3022	NA	1/787	1/4234
Fusion	Breast	SLC16A10--PEX3	HLA-A32:01	KTGFTRSTV	0.796	0.9236	1.6615	436.5	0.6791	NA	1/787	1/4234
Fusion	Breast	TBCD--NFIX	HLA-B07:02	RPQLVPQDEF	0.9758	0.5044	0.3698	299.2	0.6171	NA	1/787	1/4234
Fusion	Breast	USP15--PKP4	HLA-A32:01	LLLLRMWEF	0.9571	0.9901	0.7014	402.3	0.6333	NA	1/787	1/4234
Fusion	Breast	USP15--PKP4	HLA-A32:01	LLRMWEFAW	0.9581	0.9933	0.5868	84.6	0.1548	NA	1/787	1/4234
Fusion	Breast	WNK1--PIP4K2C	HLA-A24:23	SWILLPTSL	0.9572	0.5371	0.6737	36.2	0.4228	NA	1/787	1/4234
Fusion	Breast	WNK1--PIP4K2C	HLA-A32:01	MLSDSWILL	0.8264	0.9545	1.4399	212.5	0.3712	NA	1/787	1/4234
Fusion	Breast	WNK1--PIP4K2C	HLA-A32:01	RSSMLSDSW	0.9801	0.983	0.051	165.1	0.2943	NA	1/787	1/4234
Fusion	Breast	WNK1--PIP4K2C	HLA-A32:01	SMLSDSWIL	0.6396	0.9418	1.2899	118.9	0.2025	NA	1/787	1/4234
Fusion	Breast	WNK1--PIP4K2C	HLA-C02:02	MLSDSWILL	0.5981	0.9918	1.211	317.6	0.1907	NA	1/787	1/4234
Fusion	Breast	OLFM2--TBC1D21	HLA-B35:01	LAGQGLHPF	0.9807	0.9177	0.4614	49.1	0.1905	NA	1/787	1/4234
Fusion	Breast	TFAP2A--MAK	HLA-B27:05	RRIYLEHKNW	0.9995	0.9553	0.2071	274.1	0.795	NA	1/787	1/4234
Fusion	Breast	TFAP2A--MAK	HLA-B27:05	RRIYLEHK	0.9998	0.92	0.8884	244.6	0.7329	NA	1/787	1/4234
Fusion	Breast	TFAP2A--MAK	HLA-B27:05	LRRIYLEHK	0.9872	0.9501	1.1027	421.5	1.0939	NA	1/787	1/4234
Fusion	Breast	TFAP2A--MAK	HLA-B35:01	WSGAVFRTY	0.9459	0.8412	0.5454	430.5	0.8007	NA	1/787	1/4234
Fusion	Breast	XYLB--ITGA9	HLA-C15:02	RTVPQTCSF	0.8392	0.8908	0.1418	419	0.4497	NA	1/787	1/4234
Fusion	Breast	SLC39A9--USP15	HLA-A02:01	ALYEDILEVQ	0.9868	0.6627	1.1446	26.5	0.3614	NA	1/787	1/4234
Fusion	Breast	SLC39A9--USP15	HLA-A02:05	ALYEDILEVQ	0.9787	0.541	1.1651	358.4	1.9163	NA	1/787	1/4234
Fusion	Breast	SLC39A9--USP15	HLA-A02:05	HALYEDILEV	0.9868	0.5565	0.7106	72.6	0.4682	NA	1/787	1/4234
Fusion	Breast	SLC39A9--USP15	HLA-A02:01	ALYEDILEVQS	0.9923	0.7286	1.1589	161	1.4432	NA	1/787	1/4234
Fusion	Breast	SLC39A9--USP15	HLA-A02:01	ALYEDILEV	0.9995	0.8007	0.0003	2.6	0.0079	NA	1/787	1/4234
Fusion	Breast	SLC39A9--USP15	HLA-A02:01	SLYSIVCFV	0.9855	0.579	0.0558	5.4	0.0416	NA	1/787	1/4234
Fusion	Breast	SLC39A9--USP15	HLA-A02:05	ALYEDILEV	0.9995	0.6251	0.0003	6.4	0.0159	NA	1/787	1/4234
Fusion	Breast	TRUB1--FAM160B1	HLA-B18:01	TEEKPYDVAF	0.9392	0.8713	0.1656	469.9	0.2883	NA	1/787	1/4234
Fusion	Breast	TRUB1--FAM160B1	HLA-B18:01	EEKPYDVAF	0.9938	0.8207	0.0383	25.2	0.0176	NA	1/787	1/4234
Fusion	Breast	RPS6KB1--EFCAB3	HLA-C12:03	LATWQFQKL	0.893	0.9831	0.3514	323	1.1475	NA	1/787	1/4234
Fusion	Breast	BRD1--TTLL8	HLA-C03:04	YIPPQSARL	0.9987	0.9715	0.356	256.7	0.6591	NA	1/787	1/4234
Fusion	Breast	BRD1--TTLL8	HLA-C16:02	YIPPQSARL	0.9392	0.9873	0.3427	455.5	0.4782	NA	1/787	1/4234
Fusion	Breast	CMIP--CDYL2	HLA-A02:01	SLASATVERI	0.9658	0.5573	0.4347	201.7	1.6554	NA	1/787	1/4234
Fusion	Breast	CTDSPL--TMCC1	HLA-A02:01	SLAKIERLEV	0.9296	0.6488	0.5312	116.8	1.1688	NA	1/787	1/4234
Fusion	Breast	DNMT1--ICAM3	HLA-A02:01	SVWSWHPCL	0.8932	0.6853	0.1872	138.9	1.3074	NA	1/787	1/4234
Fusion	Breast	DNMT1--ICAM3	HLA-A24:02	VWSWHPCLL	0.9729	0.5635	0.4789	240.8	0.4141	NA	1/787	1/4234
Fusion	Breast	DNMT1--ICAM3	HLA-C16:02	SVWSWHPCL	0.9583	0.9964	0.4967	306	0.3024	NA	1/787	1/4234
Fusion	Breast	GALNT14--FAM98A	HLA-A02:01	SLCWSQFPRV	0.9629	0.8135	0.651	21.8	0.2984	NA	1/787	1/4234
Fusion	Breast	GALNT14--FAM98A	HLA-A02:01	YQTLCLAGV	0.9646	0.5415	0.3445	29.8	0.3995	NA	1/787	1/4234
Fusion	Breast	HDGF--RRNAD1	HLA-A02:01	MLSSCPSSVL	0.8856	0.7056	0.8884	200.2	1.6472	NA	1/787	1/4234
Fusion	Breast	HDGF--RRNAD1	HLA-A24:02	TWFWWPPRCPW	0.9927	0.8293	1.473	410.3	0.5813	NA	1/787	1/4234
Fusion	Breast	HDGF--RRNAD1	HLA-A02:01	FLFWRLKTA	0.9818	0.7349	0.0875	8.6	0.0948	NA	1/787	1/4234
Fusion	Breast	HDGF--RRNAD1	HLA-A02:01	MLSSCPSSV	0.994	0.7703	0.2367	11.7	0.1394	NA	1/787	1/4234
Fusion	Breast	HDGF--RRNAD1	HLA-A24:02	FWWPPRCPW	0.9845	0.8649	0.3386	137.1	0.269	NA	1/787	1/4234
Fusion	Breast	HDGF--RRNAD1	HLA-A24:02	PWVRLFLFW	0.9665	0.5224	1.7612	318.8	0.501	NA	1/787	1/4234
Fusion	Breast	HDGF--RRNAD1	HLA-A24:02	SLPETWFWW	0.9666	0.8964	0.6949	53	0.1224	NA	1/787	1/4234
Fusion	Breast	HDGF--RRNAD1	HLA-C03:04	KASGYQVSM	0.9989	0.9885	0.2054	30.8	0.1387	NA	1/787	1/4234
Fusion	Breast	HDGF--RRNAD1	HLA-C03:04	LSSCPSSVL	0.9994	0.9828	0.5601	25.7	0.1132	NA	1/787	1/4234
Fusion	Breast	HDGF--RRNAD1	HLA-C16:02	KASGYQVSM	0.9687	0.9888	0.1704	145.8	0.1113	NA	1/787	1/4234
Fusion	Breast	HDGF--RRNAD1	HLA-C16:02	LSSCPSSVL	0.8872	0.9958	0.7058	318.5	0.3184	NA	1/787	1/4234
Fusion	Breast	NSD1--CDH23	HLA-C03:04	FATDNDAGTF	0.9996	0.9883	0.5999	180.3	0.5261	NA	1/787	1/4234
Fusion	Breast	PACSIN2--NUPL2	HLA-A02:01	ALDCLRTHLL	0.9516	0.5162	1.1307	117.9	1.1763	NA	1/787	1/4234
Fusion	Breast	PACSIN2--NUPL2	HLA-A02:01	VLLILELQL	0.9424	0.651	1.0863	82.7	0.9308	NA	1/787	1/4234
Fusion	Breast	PACSIN2--NUPL2	HLA-C03:04	ISVLLILEL	0.9992	0.9917	0.5706	245.8	0.6418	NA	1/787	1/4234
Fusion	Breast	PACSIN2--NUPL2	HLA-C03:04	RTHLLHLVL	0.9732	0.972	0.1581	226.9	0.61	NA	1/787	1/4234
Fusion	Breast	PACSIN2--NUPL2	HLA-C16:02	KSHISVLLI	0.9695	0.9802	0.1302	187	0.1645	NA	1/787	1/4234
Fusion	Breast	PACSIN2--NUPL2	HLA-C16:02	RTHLLHLVL	0.9601	0.9933	0.0465	91.2	0.0546	NA	1/787	1/4234
Fusion	Breast	UBR4--HSPG2	HLA-B44:03	PEWQKGRPW	0.8581	0.8632	1.1738	276.5	0.2815	NA	1/787	1/4234
Fusion	Breast	FBXL20--CASS4	HLA-B38:01	SRFEAILTL	0.9988	0.9887	0.0187	138.8	0.0191	NA	1/787	1/4234
Fusion	Breast	FBXL20--CASS4	HLA-C12:03	SRFEAILTL	0.5821	0.9888	0.0495	56.8	0.2584	NA	1/787	1/4234
Fusion	Breast	FBXL20--CASS4	HLA-C12:03	VTKSRFEAI	0.9594	0.9812	0.5601	415.6	1.3724	NA	1/787	1/4234
Fusion	Breast	PGLS--GTPBP3	HLA-A02:01	HLPGLLCGQV	0.9253	0.6061	1.3843	177.7	1.5295	NA	1/787	1/4234
Fusion	Breast	PGLS--GTPBP3	HLA-A02:01	AVLKVWGPV	0.9385	0.5277	1.1617	235.2	1.8223	NA	1/787	1/4234
Fusion	Breast	POLM--OGDH	HLA-A02:01	GLFDPEQDL	0.9803	0.7314	0.5999	162.4	1.4503	NA	1/787	1/4234
Fusion	Breast	SOGA1--MROH8	HLA-A30:01	AVLFVGLLSK	0.9748	0.904	0.7594	357.7	1.556	NA	1/787	1/4234
Fusion	Breast	SOGA1--MROH8	HLA-A30:01	QTLMYSKNPK	0.9855	0.6325	1.1617	388.9	1.6683	NA	1/787	1/4234
Fusion	Breast	SOGA1--MROH8	HLA-A02:01	LLCDPEPSL	0.9949	0.7978	0.2825	140.2	1.3164	NA	1/787	1/4234
Fusion	Breast	SOGA1--MROH8	HLA-A02:01	LLLVQMARA	0.883	0.7363	1.5385	254.4	1.9204	NA	1/787	1/4234
Fusion	Breast	SOGA1--MROH8	HLA-A30:01	KQRVNWLQK	0.9968	0.7721	0.1734	6.3	0.0114	NA	1/787	1/4234
Fusion	Breast	SOGA1--MROH8	HLA-A30:01	MARAEPKPK	0.9872	0.7857	0.5829	23.5	0.0978	NA	1/787	1/4234
Fusion	Breast	SOGA1--MROH8	HLA-A30:01	RSAVLFVGL	0.9642	0.9132	0.4789	105	0.5226	NA	1/787	1/4234
Fusion	Breast	SOGA1--MROH8	HLA-A30:01	RVNWLQKLM	0.9381	0.9119	0.9525	231.7	1.0845	NA	1/787	1/4234
Fusion	Breast	SOGA1--MROH8	HLA-A30:01	TLMYSKNPK	0.9883	0.6653	0.7267	281	1.2746	NA	1/787	1/4234
Fusion	Breast	SOGA1--MROH8	HLA-A30:01	VLFVGLLSK	0.9589	0.8615	0.2039	399.7	1.7081	NA	1/787	1/4234
Fusion	Breast	SOGA1--MROH8	HLA-A30:01	VQMARAEPK	0.9795	0.769	0.8065	121.4	0.594	NA	1/787	1/4234
Fusion	Breast	SOGA1--MROH8	HLA-A30:01	YSKNPKLPI	0.9318	0.7664	1.5485	120.9	0.592	NA	1/787	1/4234
Fusion	Breast	SOGA1--MROH8	HLA-C07:02	IRRSAVLFV	0.6626	0.86	0.9841	218.9	0.1434	NA	1/787	1/4234
Fusion	Breast	SOGA1--MROH8	HLA-C07:02	LMYSKNPKL	0.6972	0.6856	1.4064	471.5	0.3081	NA	1/787	1/4234
Fusion	Breast	SOGA1--MROH8	HLA-C07:02	QRVNWLQKL	0.9926	0.9612	0.037	451.9	0.2948	NA	1/787	1/4234
Fusion	Breast	ZBTB2--SYNE1	HLA-A30:01	KMLFVHQTR	0.9344	0.8293	0.367	283.8	1.2847	NA	1/787	1/4234
Fusion	Breast	GGT6--PELP1	HLA-A24:02	SWPHFFCLGW	0.993	0.7424	0.5999	59.7	0.1355	NA	1/787	1/4234
Fusion	Breast	GGT6--PELP1	HLA-C07:01	SRASWPHFF	0.9981	0.7946	0.0166	30.5	0.0095	NA	1/787	1/4234
Fusion	Breast	GGT6--PELP1	HLA-C07:02	SRASWPHFF	0.8445	0.9677	0.0177	31.4	0.0116	NA	1/787	1/4234
Fusion	Breast	PYCR1--NOTUM	HLA-B07:02	HPSLRRTST	0.991	0.5233	0.6837	48.5	0.1694	NA	1/787	1/4234
Fusion	Breast	AHR--CDK14	HLA-B35:01	KPVQKTLSY	0.992	0.6441	0.0131	51.6	0.2004	NA	1/787	1/4234
Fusion	Breast	NARFL--RBBP6	HLA-C03:04	FIGPSQNIL	0.9987	0.9915	0.356	102.2	0.3681	NA	1/787	1/4234
Fusion	Breast	PRDM16--NARS2	HLA-B27:14	KRMDSFCPI	0.9995	0.744	0.8087	124.5	0.0378	NA	1/787	1/4234
Fusion	Breast	PRDM16--NARS2	HLA-C07:02	KRMDSFCPI	0.9045	0.9108	0.9621	285.3	0.1877	NA	1/787	1/4234
Fusion	Breast	TPGS1--PRKACA	HLA-A24:02	SVARSFLSF	0.9709	0.5385	0.5213	388.5	0.5639	NA	1/787	1/4234
Fusion	Breast	TPGS1--PRKACA	HLA-B39:01	AHHSQRWKL	0.9909	0.8928	0.4367	280	0.3004	NA	1/787	1/4234
Fusion	Breast	TPGS1--PRKACA	HLA-B39:01	MRSVARSFL	0.9938	0.877	0.8361	110.1	0.1185	NA	1/787	1/4234
Fusion	Breast	TPGS1--PRKACA	HLA-B39:01	WKLPSYQSL	0.9981	0.9479	1.5067	122.7	0.1299	NA	1/787	1/4234
Fusion	Breast	TPGS1--PRKACA	HLA-C07:02	MRSVARSFL	0.9359	0.9686	0.4614	76.6	0.0388	NA	1/787	1/4234
Fusion	Breast	ULK2--MBD3	HLA-B39:01	EQEPPARAL	0.9966	0.9725	0.7151	299.1	0.3185	NA	1/787	1/4234
Fusion	Breast	ABTB2--ATXN3	HLA-C07:02	RRLTLCSTL	0.9476	0.9766	0.5312	323.8	0.2143	NA	1/787	1/4234
Fusion	Breast	ELMOD3--TTC27	HLA-A02:01	VLAFRGIPCL	0.8716	0.6323	1.8843	196.9	1.6295	NA	1/787	1/4234
Fusion	Breast	ITGB6--COMMD1	HLA-A02:01	HLYEESEFLCL	0.9989	0.6892	0.0745	159	1.4328	NA	1/787	1/4234
Fusion	Breast	ITGB6--COMMD1	HLA-A02:01	FLCLEFDEV	0.9961	0.8428	0.2183	13.6	0.1663	NA	1/787	1/4234
Fusion	Breast	ITGB6--COMMD1	HLA-A02:01	HLYEESEFL	0.9972	0.8787	0.0052	7.6	0.0759	NA	1/787	1/4234
Fusion	Breast	ITGB6--COMMD1	HLA-A02:01	QILKTLSEV	0.9828	0.5918	0.4113	151.7	1.3922	NA	1/787	1/4234
Fusion	Breast	ITGB6--COMMD1	HLA-A02:01	TLSEVEESI	0.9928	0.6224	0.3698	79.5	0.9037	NA	1/787	1/4234
Fusion	Breast	NAT10--CAPRIN1	HLA-B07:02	FPRPVPSSDW	0.9268	0.554	0.348	459.2	0.7904	NA	1/787	1/4234
Fusion	Breast	NAT10--CAPRIN1	HLA-B07:02	LPWFPRPV	0.9987	0.706	0.7286	134.9	0.365	NA	1/787	1/4234
Fusion	Breast	NAT10--CAPRIN1	HLA-A02:01	HLPWFPRPV	0.9606	0.9104	0.3495	145.7	1.3536	NA	1/787	1/4234
Fusion	Breast	PHYHD1--LRRC8A	HLA-A02:01	AQIETLPPEL	0.9796	0.6067	0.7683	83.3	0.9361	NA	1/787	1/4234
Fusion	Breast	SLC25A10--HGS	HLA-B07:02	APRGPATAGT	0.9974	0.5729	0.5686	55.7	0.1879	NA	1/787	1/4234
Fusion	Breast	SLC25A10--HGS	HLA-B07:02	GPATAGTGAA	0.9874	0.5932	0.9993	144	0.3801	NA	1/787	1/4234
Fusion	Breast	SLC25A10--HGS	HLA-B07:02	TPAALHRGAA	0.9879	0.5406	0.7456	56.9	0.1907	NA	1/787	1/4234
Fusion	Breast	SLC25A10--HGS	HLA-B07:02	SPPAAAPRGPA	0.9997	0.6924	0.8585	113.8	0.3259	NA	1/787	1/4234
Fusion	Breast	SLC25A10--HGS	HLA-B07:02	TPAALHRGAAA	0.9995	0.6685	0.3753	319	0.6422	NA	1/787	1/4234
Fusion	Breast	SLC25A10--HGS	HLA-B07:02	APRGPATA	0.9999	0.6409	0.8468	135	0.3652	NA	1/787	1/4234
Fusion	Breast	SLC25A10--HGS	HLA-A02:01	GLHGEPVSL	0.9702	0.7741	0.0848	248.2	1.8909	NA	1/787	1/4234
Fusion	Breast	SLC25A10--HGS	HLA-A02:01	TLWRSPPAA	0.9176	0.7422	0.0267	94.9	1.0239	NA	1/787	1/4234
Fusion	Breast	SLC25A10--HGS	HLA-B07:02	APRGPATAG	0.9959	0.6104	0.4789	28.3	0.1033	NA	1/787	1/4234
Fusion	Breast	SLC25A10--HGS	HLA-C07:02	HRQPRLLIL	0.9824	0.8708	0.0904	28.2	0.01	NA	1/787	1/4234
Fusion	Breast	PDE7A--NKAIN3	HLA-C12:03	RQLSQVSAL	0.9674	0.9534	0.3898	413.6	1.3681	NA	1/787	1/4234
Fusion	Breast	RFWD2--SRGAP2	HLA-B44:03	YEDKSNDFVW	0.9985	0.9394	0.241	138.9	0.1616	NA	1/787	1/4234
Fusion	Breast	OSBPL2--EDEM2	HLA-A11:01	AVTDFGECLR	0.9882	0.6549	0.4967	363.6	1.4687	NA	1/787	1/4234
Fusion	Breast	OSBPL2--EDEM2	HLA-C04:01	FFDAVTDF	0.9998	0.6981	0.0427	462.5	0.0099	NA	1/787	1/4234
Fusion	Breast	UQCC1--CACNA2D4	HLA-A11:01	HVCAALWMGR	0.965	0.5455	1.4611	428.7	1.6118	NA	1/787	1/4234
Fusion	Breast	UQCC1--CACNA2D4	HLA-A68:24	AALWMGRAHR	0.8678	0.5299	1.0863	245.7	1.5431	NA	1/787	1/4234
Fusion	Breast	UQCC1--CACNA2D4	HLA-A68:24	HVCAALWMGR	0.9937	0.8789	0.3217	12.9	0.1443	NA	1/787	1/4234
Fusion	Breast	SAMHD1--DDX27	HLA-C02:02	FTKPQVINF	0.7216	0.9796	0.0226	285.5	0.1649	NA	1/787	1/4234
Fusion	Breast	ATP8B1--NARS	HLA-C07:02	FRKGKNLMFL	0.9323	0.9731	1.2692	306.2	0.2017	NA	1/787	1/4234
Fusion	Breast	ATP8B1--NARS	HLA-C07:02	FRKGKNLMF	0.8901	0.9714	0.3974	54.4	0.0254	NA	1/787	1/4234
Fusion	Breast	TBCD--CPM	HLA-A02:01	RLVDGRNLWV	0.9878	0.63	0.1255	60.6	0.7384	NA	1/787	1/4234
Fusion	Breast	TBCD--CPM	HLA-A02:01	RLVDGRNLWVL	0.9923	0.6127	0.1302	51.7	0.6476	NA	1/787	1/4234
Fusion	Breast	TBCD--CPM	HLA-C05:01	LVDGRNLWV	0.9996	0.9853	0.3199	201.8	0.0933	NA	1/787	1/4234
Fusion	Breast	ZNF107--FAM83D	HLA-B07:02	VYPSGPGSPL	0.9411	0.5174	1.314	14.4	0.0452	NA	1/787	1/4234
Fusion	Breast	ZNF107--FAM83D	HLA-B07:02	CVYPSGPGSPL	0.9916	0.5552	0.8629	95	0.2855	NA	1/787	1/4234
Fusion	Breast	ZNF107--FAM83D	HLA-B07:02	RPARNMQET	0.9952	0.7121	1.1532	386.3	0.7185	NA	1/787	1/4234
Fusion	Breast	ARFGEF2--RNF114	HLA-C16:01	FALHACRNV	0.6896	0.9831	0.7833	336.4	1.0242	NA	1/787	1/4234
Fusion	Breast	ARFGEF2--RNF114	HLA-C16:01	RACQVALAF	0.7769	0.9701	0.0717	74	0.258	NA	1/787	1/4234
Fusion	Breast	GALK2--NAPSA	HLA-B07:02	APQVGGPI	0.9872	0.5001	1.0445	53.6	0.1831	NA	1/787	1/4234
Fusion	Breast	GALK2--NAPSA	HLA-A33:01	IPWGQAHLR	0.9529	0.5248	0.1566	278.5	0.5962	NA	1/787	1/4234
Fusion	Breast	GALK2--NAPSA	HLA-C16:01	RAPQVGGPI	0.6256	0.9706	0.6655	195.6	0.6495	NA	1/787	1/4234
Fusion	Breast	GRID1--PGPEP1L	HLA-C16:01	FINEELSKL	0.9798	0.9797	0.1963	209.3	0.6883	NA	1/787	1/4234
Fusion	Breast	ICE2--CIB1	HLA-C15:05	SSFYVGLDV	0.9934	0.8793	0.6333	495.4	0.3328	NA	1/787	1/4234
Fusion	Breast	ICE2--CIB1	HLA-C16:01	SSFYVGLDV	0.6027	0.9536	1.2933	245.6	0.7955	NA	1/787	1/4234
Fusion	Breast	INPP5A--PPIP5K1	HLA-C16:01	ISFPPSPL	0.9943	0.9834	0.4916	170.9	0.5759	NA	1/787	1/4234
Fusion	Breast	SPG11--CAMK2G	HLA-C16:01	TSSQGTVRL	0.5768	0.9699	0.678	268.5	0.8606	NA	1/787	1/4234
Fusion	Breast	UBR1--SUPV3L1	HLA-C16:01	HTNEVKKVL	0.9482	0.9699	0.3898	269.6	0.8635	NA	1/787	1/4234
Fusion	Breast	ZNF106--ADK	HLA-C16:01	CLNWSLTSL	0.6475	0.9867	1.4776	440.7	1.2614	NA	1/787	1/4234
Fusion	Breast	ZNF106--ADK	HLA-C16:01	LLIPMELEM	0.9513	0.9461	0.6973	196.4	0.6518	NA	1/787	1/4234
Fusion	Breast	ZNF564--WIZ	HLA-B07:02	ASRATRAPI	0.9247	0.5014	1.5977	119.7	0.3376	NA	1/787	1/4234
Fusion	Breast	ZSCAN29--MGMT	HLA-B07:02	HPHPVPQSGL	0.9974	0.5816	0.0861	54.7	0.1856	NA	1/787	1/4234
Fusion	Breast	ZSCAN29--MGMT	HLA-B07:02	SPSRFPARVV	0.995	0.6699	0.0523	30.8	0.1106	NA	1/787	1/4234
Fusion	Breast	ZSCAN29--MGMT	HLA-A33:01	CLFPPARGYRR	0.9897	0.5727	1.2431	279.2	0.5972	NA	1/787	1/4234
Fusion	Breast	ZSCAN29--MGMT	HLA-A33:01	DFLPAISSPGR	0.9984	0.7744	0.184	82.8	0.2305	NA	1/787	1/4234
Fusion	Breast	ZSCAN29--MGMT	HLA-B07:02	RPRSSCRGGPS	0.9997	0.7591	1.2661	274.5	0.5839	NA	1/787	1/4234
Fusion	Breast	ZSCAN29--MGMT	HLA-B07:02	SPRCGSRRSGA	0.9998	0.5968	1.1446	494	0.8252	NA	1/787	1/4234
Fusion	Breast	ZSCAN29--MGMT	HLA-B07:02	VPRAGSSPSRF	1	0.7416	0.1055	17.2	0.0589	NA	1/787	1/4234
Fusion	Breast	ZSCAN29--MGMT	HLA-B07:02	APDAVHSL	0.9978	0.6921	0.557	246.7	0.5434	NA	1/787	1/4234
Fusion	Breast	ZSCAN29--MGMT	HLA-B07:02	SPSRFPARV	0.999	0.6506	0.3851	347.7	0.6761	NA	1/787	1/4234
Fusion	Breast	ZSCAN29--MGMT	HLA-B07:02	VPRAGSSPS	0.9982	0.6504	0.8749	34.8	0.1209	NA	1/787	1/4234
Fusion	Breast	ZSCAN29--MGMT	HLA-C16:01	GAPDAVHSL	0.8673	0.9872	0.037	316.8	0.9813	NA	1/787	1/4234
Fusion	Breast	ZSCAN29--MGMT	HLA-C16:01	RAGSSPSRF	0.5449	0.9916	0.7788	392.9	1.1486	NA	1/787	1/4234
Fusion	Breast	ZSCAN29--MGMT	HLA-C16:01	RVVHQTGVM	0.8162	0.9835	0.7967	207.8	0.6842	NA	1/787	1/4234
Fusion	Breast	FGFR2--CTNNA3	HLA-A32:01	KLSKLQPIIW	0.9809	0.9256	0.2335	339.9	0.5512	NA	1/787	1/4234
Fusion	Breast	FGFR2--CTNNA3	HLA-A32:01	KLSKLQPII	0.972	0.8746	0.4001	127.1	0.2215	NA	1/787	1/4234
Fusion	Breast	FGFR2--CTNNA3	HLA-A32:01	KVKRSKTPW	0.9642	0.9468	0.7833	417.3	0.6538	NA	1/787	1/4234
Fusion	Breast	FGFR2--CTNNA3	HLA-A32:01	RLLMLHLLW	0.9934	0.9806	0.2054	34.9	0.0628	NA	1/787	1/4234
Fusion	Breast	FGFR2--CTNNA3	HLA-A32:01	SVHGRIIYM	0.9424	0.6488	0.3461	477.8	0.7322	NA	1/787	1/4234
Fusion	Breast	GNAL--CSNK1E	HLA-C05:01	ITDFEYSQV	0.9999	0.9472	0.0658	139.1	0.0724	NA	1/787	1/4234
Fusion	Breast	GNAL--CSNK1E	HLA-C05:01	YSQVPTSPL	0.9946	0.8912	0.4061	320.5	0.1371	NA	1/787	1/4234
Fusion	Breast	GNAL--CSNK1E	HLA-C08:02	YSQVPTSPL	0.9907	0.9541	0.4397	242.2	0.0265	NA	1/787	1/4234
Fusion	Breast	SLTM--ATE1	HLA-A32:01	LLFCSTPAWW	0.9283	0.9889	0.6635	484.2	0.7402	NA	1/787	1/4234
Fusion	Breast	SLTM--ATE1	HLA-A32:01	RLLFCSTPAW	0.9905	0.9869	0.4113	27.7	0.0513	NA	1/787	1/4234
Fusion	Breast	SLTM--ATE1	HLA-A32:01	RLLFCSTPAWW	0.9787	0.9951	0.5829	340.6	0.5522	NA	1/787	1/4234
Fusion	Breast	SLTM--ATE1	HLA-B44:02	GEDDTFLTAQW	0.9996	0.8551	0.0441	92.6	0.118	NA	1/787	1/4234
Fusion	Breast	SLTM--ATE1	HLA-A32:01	KTQVRRLLF	0.9931	0.7777	0.0904	89	0.1605	NA	1/787	1/4234
Fusion	Breast	SLTM--ATE1	HLA-A32:01	LLFCSTPAW	0.9354	0.9819	0.4061	51.4	0.0909	NA	1/787	1/4234
Fusion	Breast	ZNF586--SRC	HLA-A32:01	TLISSLGTW	0.9655	0.9684	0.148	229.3	0.3946	NA	1/787	1/4234
Fusion	Breast	DIP2A--PRR4	HLA-B15:17	RSDVNYEDFTF	0.9913	0.9332	0.8749	119.5	1.3957	NA	1/787	1/4234
Fusion	Breast	MCUB--C4BPA	HLA-B07:02	RPWPLPPPPQL	0.9997	0.7755	0.3009	150.1	0.3897	NA	1/787	1/4234
Fusion	Breast	MCUB--C4BPA	HLA-B07:02	WPLPPPPQL	0.9902	0.6709	0.2446	111.2	0.3206	NA	1/787	1/4234
Fusion	Breast	TGDS--DAPK1	HLA-A11:01	SAWCPTATWR	0.9864	0.7053	1.2493	387.5	1.5238	NA	1/787	1/4234
Fusion	Breast	TGDS--DAPK1	HLA-B15:17	ATPWRTSSAW	0.9914	0.9297	0.5657	14.5	0.2281	NA	1/787	1/4234
Fusion	Breast	TGDS--DAPK1	HLA-B15:17	CTTTGAATPW	0.9829	0.9848	1.0474	30.6	0.5031	NA	1/787	1/4234
Fusion	Breast	TGDS--DAPK1	HLA-B15:17	QTSWGSCCPW	0.9817	0.9774	1.224	53.3	0.8047	NA	1/787	1/4234
Fusion	Breast	TGDS--DAPK1	HLA-B15:17	RSCCRSSMPW	0.9936	0.9113	1.4776	40.1	0.6382	NA	1/787	1/4234
Fusion	Breast	TGDS--DAPK1	HLA-B15:17	SSAWCPTATW	0.9984	0.9549	0.3168	10.1	0.1347	NA	1/787	1/4234
Fusion	Breast	TGDS--DAPK1	HLA-B07:02	RPHGRCTTTGA	0.9996	0.5641	0.7399	120.5	0.339	NA	1/787	1/4234
Fusion	Breast	TGDS--DAPK1	HLA-B15:17	AATPWRTSSAW	0.9985	0.9231	0.9059	107.4	1.2996	NA	1/787	1/4234
Fusion	Breast	TGDS--DAPK1	HLA-B15:17	TSSAWCPTATW	0.9968	0.9475	0.9297	36.1	0.5833	NA	1/787	1/4234
Fusion	Breast	TGDS--DAPK1	HLA-B15:17	WTPAGSAQTSW	0.9917	0.8711	0.6949	126	1.4372	NA	1/787	1/4234
Fusion	Breast	TGDS--DAPK1	HLA-A11:01	TTGAATPWR	0.9513	0.6065	0.7726	449.7	1.6533	NA	1/787	1/4234
Fusion	Breast	TGDS--DAPK1	HLA-B15:17	KQFRTCCSW	0.8514	0.9283	0.8749	180.1	1.7705	NA	1/787	1/4234
Fusion	Breast	TGDS--DAPK1	HLA-B15:17	SAWCPTATW	0.9955	0.9511	0.0427	11	0.1546	NA	1/787	1/4234
Fusion	Breast	TGDS--DAPK1	HLA-B15:17	STSCKVKQF	0.9818	0.7152	0.5019	126.6	1.4413	NA	1/787	1/4234
Fusion	Breast	TGDS--DAPK1	HLA-B15:17	TSWGSCCPW	0.9898	0.978	0.5886	16.3	0.2611	NA	1/787	1/4234
Fusion	Breast	TGDS--DAPK1	HLA-B15:17	TTTGAATPW	0.9716	0.9805	0.4134	12.4	0.1854	NA	1/787	1/4234
Fusion	Breast	TGDS--DAPK1	HLA-C03:03	SAWCPTATW	0.802	0.987	0.5245	430.3	0.8995	NA	1/787	1/4234
Fusion	Breast	TGDS--DAPK1	HLA-C07:01	WRSCCRSSM	0.9848	0.7314	1.3306	182.2	0.0695	NA	1/787	1/4234
Fusion	Breast	ZC3HAV1--ITPKB	HLA-C03:03	HVLQEEVPL	0.9956	0.9943	0.9226	287.6	0.7048	NA	1/787	1/4234
Fusion	Breast	TRIM36--HEXB	HLA-A02:01	WLYFWFLQV	0.9661	0.8635	0.1821	19.2	0.2596	NA	1/787	1/4234
Fusion	Breast	TRIM36--HEXB	HLA-C05:01	GSDSPISWL	0.9998	0.9823	0.3057	172.9	0.0844	NA	1/787	1/4234
Fusion	Breast	C8orf76--NKAIN3	HLA-C03:02	LLIAEVSAL	0.9808	0.9642	0.2942	103.4	0.4612	NA	1/787	1/4234
Fusion	Breast	UBA2--PEPD	HLA-C03:02	FSHIDLPL	0.9999	0.9583	0.585	331.6	1.1134	NA	1/787	1/4234
Fusion	Breast	KIF13B--SARAF	HLA-A32:01	ASFSDYYYKW	0.9929	0.8884	0.0441	192	0.34	NA	1/787	1/4234
Fusion	Breast	KIF13B--SARAF	HLA-A32:01	KTDLDIAYKF	0.992	0.8965	0.3041	59.1	0.1087	NA	1/787	1/4234
Fusion	Breast	KIF13B--SARAF	HLA-A32:01	RAATPFSDSW	0.9844	0.9676	0.0583	400.5	0.6307	NA	1/787	1/4234
Fusion	Breast	KIF13B--SARAF	HLA-C07:02	WYYPSYPPSY	0.868	0.9607	0.1793	161.1	0.0982	NA	1/787	1/4234
Fusion	Breast	KIF13B--SARAF	HLA-A32:01	ATSGFGSAF	0.8188	0.9943	0.3009	188.1	0.3337	NA	1/787	1/4234
Fusion	Breast	KIF13B--SARAF	HLA-A32:01	GIAFVVYKL	0.8941	0.8244	1.1987	329.9	0.538	NA	1/787	1/4234
Fusion	Breast	KIF13B--SARAF	HLA-A32:01	KVESWSQTL	0.6576	0.9049	0.8127	153.8	0.2749	NA	1/787	1/4234
Fusion	Breast	KIF13B--SARAF	HLA-A68:01	PSYPGTWNR	0.9021	0.9124	0.3398	147.7	1.149	NA	1/787	1/4234
Fusion	Breast	KIF13B--SARAF	HLA-C07:02	YSPPPYSEY	0.7348	0.8787	0.1793	368	0.2432	NA	1/787	1/4234
Fusion	Breast	KIF13B--SARAF	HLA-C07:02	YYPSYPPSY	0.5258	0.9529	0.0201	43.9	0.0178	NA	1/787	1/4234
Fusion	Breast	KIF13B--SARAF	HLA-C08:02	ILDFSSLSL	0.9998	0.9691	0.1383	64.3	0.0093	NA	1/787	1/4234
Fusion	Breast	NOL11--HSF5	HLA-A32:01	SQIFICWWTW	0.9429	0.9481	1.5067	128.7	0.2253	NA	1/787	1/4234
Fusion	Breast	NOL11--HSF5	HLA-A32:01	KLVKSQIFI	0.9764	0.8036	0.5829	138.9	0.2471	NA	1/787	1/4234
Fusion	Breast	NOL11--HSF5	HLA-A32:01	QIFICWWTW	0.9294	0.9922	0.719	142.7	0.2546	NA	1/787	1/4234
Fusion	Breast	TM9SF3--TLL2	HLA-A68:01	TPQPWTLAPR	0.8145	0.9368	0.9226	269.1	1.6199	NA	1/787	1/4234
Fusion	Breast	TM9SF3--TLL2	HLA-A68:01	QTPQPWTLAPR	0.9774	0.9064	0.2604	116.8	1.0034	NA	1/787	1/4234
Fusion	Breast	TM9SF3--TLL2	HLA-A68:01	TSLEGTSLGAR	0.9953	0.5898	0.3107	390.8	1.9889	NA	1/787	1/4234
Fusion	Breast	TM9SF3--TLL2	HLA-A32:01	RAAQTPQPW	0.9332	0.9757	0.4825	244.9	0.4185	NA	1/787	1/4234
Fusion	Breast	TM9SF3--TLL2	HLA-B39:01	AQTPQPWTL	0.9459	0.9966	0.1465	248.1	0.2671	NA	1/787	1/4234
Fusion	Breast	TM9SF3--TLL2	HLA-B39:01	IQMSYSVGL	0.8724	0.8284	1.3	51	0.0531	NA	1/787	1/4234
Fusion	Breast	ARHGEF3--ACP6	HLA-C12:03	ISVEWNPQL	0.9207	0.9763	0.1149	139	0.6062	NA	1/787	1/4234
Fusion	Breast	TMEM134--SPTBN2	HLA-B27:02	RRIKTQRSNF	0.9999	0.5045	0.4078	380.5	0.1403	NA	1/787	1/4234
Fusion	Breast	TMEM134--SPTBN2	HLA-B27:05	RRIKTQRSNF	0.9999	0.7683	0.4382	63.2	0.2085	NA	1/787	1/4234
Fusion	Breast	TMEM134--SPTBN2	HLA-B27:02	RRIKTQRSNFW	0.9999	0.5475	0.1977	394.7	0.1475	NA	1/787	1/4234
Fusion	Breast	TMEM134--SPTBN2	HLA-A02:01	TQRSNFWAV	0.6516	0.6546	0.897	172	1.4988	NA	1/787	1/4234
Fusion	Breast	TMEM134--SPTBN2	HLA-B27:02	QRSNFWAVF	0.9997	0.7182	0.5002	191.3	0.068	NA	1/787	1/4234
Fusion	Breast	TMEM134--SPTBN2	HLA-B27:05	QRSNFWAVF	0.9997	0.9182	0.5815	101.6	0.3393	NA	1/787	1/4234
Fusion	Breast	TRIP11--CYP46A1	HLA-A02:01	MVLEHFQQEV	0.9903	0.7367	0.7329	88.9	0.9809	NA	1/787	1/4234
Fusion	Breast	TRIP11--CYP46A1	HLA-A02:01	VLEHFQQEV	0.9952	0.8348	0.4409	116.7	1.1685	NA	1/787	1/4234
Fusion	Breast	ZNF331--NLRP11	HLA-B08:01	CPMSRLLLVL	0.9938	0.5906	1.0394	46.8	0.0794	NA	1/787	1/4234
Fusion	Breast	ZNF331--NLRP11	HLA-B08:01	MSRLLLVL	0.999	0.536	1.0705	212.6	0.3758	NA	1/787	1/4234
Fusion	Breast	ZNF331--NLRP11	HLA-B15:01	RLLLVLKTY	0.9848	0.8669	0.241	260.1	1.1117	NA	1/787	1/4234
Fusion	Breast	GFOD1--CYP39A1	HLA-A02:01	TLASIPKNV	0.9865	0.5633	0.0601	157.8	1.4265	NA	1/787	1/4234
Fusion	Breast	ZNF184--CD2AP	HLA-A02:01	LLSSASFQEI	0.9887	0.554	0.879	97.3	1.0403	NA	1/787	1/4234
Fusion	Breast	ANXA13--DCAF13	HLA-A03:01	ATYGKGGISY	0.9919	0.5408	0.0583	109.5	0.3909	NA	1/787	1/4234
Fusion	Breast	ANXA13--DCAF13	HLA-B15:01	ATYGKGGISY	0.9999	0.9137	0.0523	50.5	0.2541	NA	1/787	1/4234
Fusion	Breast	ANXA13--DCAF13	HLA-B15:01	ISYKENATCY	0.9996	0.9154	0.4491	148.3	0.7289	NA	1/787	1/4234
Fusion	Breast	ANXA13--DCAF13	HLA-A03:01	ATYGKGGISYK	0.9994	0.6609	0.0073	12.5	0.0239	NA	1/787	1/4234
Fusion	Breast	ANXA13--DCAF13	HLA-A31:01	ATYGKGGISYK	0.991	0.5308	0.0396	436.8	1.9324	NA	1/787	1/4234
Fusion	Breast	DCUN1D1--CCDC50	HLA-A02:11	GLVCRDFAV	0.9935	0.5714	0.2841	3.3	0.1215	NA	1/787	1/4234
Fusion	Breast	ERBB2--ARL5C	HLA-A02:11	FLPESFDGA	0.9786	0.7628	0.0794	5.2	0.2742	NA	1/787	1/4234
Fusion	Breast	LLGL2--CA10	HLA-A02:11	ALGQHIWRA	0.989	0.6531	0.0201	4.1	0.1862	NA	1/787	1/4234
Fusion	Breast	LLGL2--CA10	HLA-B44:02	SQWDHVQHW	0.9932	0.6365	0.0658	145	0.1731	NA	1/787	1/4234
Fusion	Breast	TRIM25--TBX4	HLA-A11:01	GTVPATWTY	0.9047	0.506	0.0835	155	0.8403	NA	1/787	1/4234
Fusion	Breast	FIG4--WASF1	HLA-A02:01	YLLVLHSL	0.9673	0.6189	1.8016	83.9	0.9405	NA	1/787	1/4234
Fusion	Breast	FIG4--WASF1	HLA-A02:01	YLLVLHSLI	0.9567	0.5466	0.2942	27.7	0.3754	NA	1/787	1/4234
Fusion	Breast	KMT2C--CALN1	HLA-A33:01	SAWTWTGMAR	0.9826	0.8989	0.3235	88.8	0.2454	NA	1/787	1/4234
Fusion	Breast	KMT2C--CALN1	HLA-C03:04	RSWAWPCAL	0.9725	0.9945	0.1947	45.5	0.195	NA	1/787	1/4234
Fusion	Breast	QTRT1--ILF3	HLA-A02:01	AMAETQTTA	0.9704	0.5165	0.4426	222.7	1.7603	NA	1/787	1/4234
Fusion	Breast	RFTN1--DAZL	HLA-A02:01	FLEFTTLSAV	0.9924	0.5852	0.6252	8.8	0.0993	NA	1/787	1/4234
Fusion	Breast	USP37--RNF25	HLA-A02:01	NLDRVLPSEV	0.8913	0.8039	1.516	179.2	1.537	NA	1/787	1/4234
Fusion	Breast	POLR2F--GGA1	HLA-A68:01	ELKPPLATR	0.9975	0.7856	0.0025	42.1	0.479	NA	1/787	1/4234
Fusion	Breast	SENP5--PIGZ	HLA-A68:01	LSDADLWIQR	0.8197	0.8281	1.3243	61.9	0.6388	NA	1/787	1/4234
Fusion	Breast	SENP5--PIGZ	HLA-A68:01	PSADGLCAPR	0.8353	0.5266	0.9357	319.4	1.7856	NA	1/787	1/4234
Fusion	Breast	SENP5--PIGZ	HLA-A68:01	SADGLCAPR	0.9588	0.607	0.148	96.8	0.8864	NA	1/787	1/4234
Fusion	Breast	SENP7--RFC4	HLA-C07:02	FFKLPNLLF	0.6863	0.9546	0.1527	444.6	0.2907	NA	1/787	1/4234
Fusion	Breast	SENP7--RFC4	HLA-C07:02	FKLPNLLFY	0.9382	0.9393	0.0848	356.7	0.2361	NA	1/787	1/4234
Fusion	Breast	GRHPR--GATA3	HLA-C03:03	VALARAAEL	0.9998	0.9902	0.0356	11.9	0.0422	NA	1/787	1/4234
Fusion	Breast	ANK3--TMPRSS15	HLA-A02:01	TIFNVKMESV	0.9482	0.5056	0.3837	165.4	1.4657	NA	1/787	1/4234
Fusion	Breast	ANK3--TMPRSS15	HLA-B57:01	NVKMESVFHW	0.9992	0.9715	0.4475	340.6	0.5603	NA	1/787	1/4234
Fusion	Breast	NOA1--PPP3CA	HLA-A02:01	LLQLFHFLQV	0.9696	0.8022	0.8492	69.2	0.8204	NA	1/787	1/4234
Fusion	Breast	NOA1--PPP3CA	HLA-A02:01	TLLQLFHFLQV	0.9695	0.7921	1.9543	213.3	1.7145	NA	1/787	1/4234
Fusion	Breast	NOA1--PPP3CA	HLA-B57:01	KCLIMMENLVW	0.9997	0.9868	0.6875	341.8	0.5618	NA	1/787	1/4234
Fusion	Breast	NOA1--PPP3CA	HLA-A02:01	LQLFHFLQV	0.9759	0.8047	0.1807	50.7	0.6374	NA	1/787	1/4234
Fusion	Breast	NOA1--PPP3CA	HLA-A02:01	QLFHFLQVT	0.9388	0.7746	1.3988	249.7	1.8988	NA	1/787	1/4234
Fusion	Breast	NOA1--PPP3CA	HLA-A02:01	TLLQLFHFL	0.9677	0.5024	0.051	14.7	0.1802	NA	1/787	1/4234
Fusion	Breast	NOA1--PPP3CA	HLA-B57:01	HTLLQLFHF	0.9962	0.9654	0.3041	228.3	0.4185	NA	1/787	1/4234
Fusion	Breast	NOA1--PPP3CA	HLA-B57:01	LIMMENLVW	0.9807	0.9783	0.5534	104.3	0.2379	NA	1/787	1/4234
Fusion	Breast	RALGPS1--ZNF79	HLA-B07:02	GPGDPHSSAV	0.9978	0.5927	0.7247	302.8	0.6218	NA	1/787	1/4234
Fusion	Breast	RALGPS1--ZNF79	HLA-B07:02	GPGDPHSSA	0.9964	0.5874	0.68	395.5	0.7282	NA	1/787	1/4234
Fusion	Breast	CSN2--CSN1S1	HLA-B07:02	APVHNPISPI	0.9803	0.5113	0.6295	41.1	0.1447	NA	1/787	1/4234
Fusion	Breast	EHF--CSN2	HLA-B07:02	HPSFQPQPL	0.9958	0.5383	0.2213	27	0.0989	NA	1/787	1/4234
Fusion	Breast	NACA--CSN2	HLA-B07:02	TPPTRSTL	0.9998	0.5089	0.5058	92.2	0.2791	NA	1/787	1/4234
Fusion	Breast	TDG--STAB2	HLA-B35:03	EPFCSGTSL	0.9761	0.8997	0.0794	256.3	0.046	NA	1/787	1/4234
Fusion	Breast	CPAMD8--HAUS8	HLA-B35:01	HGAPQPVVF	0.9914	0.9064	0.2925	458	0.8338	NA	1/787	1/4234
Fusion	Breast	FNIP2--LARP7	HLA-A11:01	GIARSAANR	0.9398	0.5086	1.9612	482.5	1.7183	NA	1/787	1/4234
Fusion	Breast	MRAS--NME9	HLA-A11:01	AILDVSSER	0.9876	0.5955	0.1285	151.9	0.8274	NA	1/787	1/4234
Fusion	Breast	SNTB1--COL22A1	HLA-A32:01	KMGSVVRRV	0.6806	0.9641	0.296	493.4	0.7516	NA	1/787	1/4234
Fusion	Breast	SNTB1--COL22A1	HLA-A32:01	RVKLVLQAL	0.984	0.9622	0.3268	251	0.428	NA	1/787	1/4234
Fusion	Breast	SNTB1--COL22A1	HLA-B35:01	LPDMSVPPV	0.9721	0.8027	0.9079	111.7	0.3429	NA	1/787	1/4234
Fusion	Breast	SNTB1--COL22A1	HLA-B35:01	LVLQALPGY	0.8907	0.7165	1.5432	147.7	0.4042	NA	1/787	1/4234
Fusion	Breast	SNTB1--COL22A1	HLA-B35:01	VPVALQEVW	0.9901	0.6538	0.0465	313.6	0.6585	NA	1/787	1/4234
Fusion	Breast	GRK2--TPCN2	HLA-B15:01	SQKLVTQEAL	0.9986	0.8842	0.8698	284	1.1871	NA	1/787	1/4234
Fusion	Breast	GRK2--TPCN2	HLA-C03:04	LTWSPQNSI	0.9706	0.9697	1.2561	327.5	0.7611	NA	1/787	1/4234
Fusion	Breast	WBP1L--ADAMTS2	HLA-C03:04	RAEPPQAGL	0.9842	0.9909	0.2745	225.7	0.6077	NA	1/787	1/4234
Fusion	Breast	WBP1L--ADAMTS2	HLA-C05:01	RAEPPQAGL	0.9998	0.9651	0.2778	259.5	0.1158	NA	1/787	1/4234
Fusion	Breast	PPFIA1--CBLB	HLA-A02:01	WLCDWGWEYL	0.996	0.8236	0.5279	13.9	0.1693	NA	1/787	1/4234
Fusion	Breast	PPFIA1--CBLB	HLA-C03:04	SAPPTSRTL	0.9994	0.9875	0.0299	68.1	0.2751	NA	1/787	1/4234
Fusion	Breast	RAC3--ABCA8	HLA-C03:04	VVGDGYSSL	0.9965	0.9902	0.3851	189.1	0.5433	NA	1/787	1/4234
Fusion	Breast	THOC2--RHOXF2B	HLA-B18:01	YECYGAVAY	0.9958	0.8709	0.3837	10.3	0.0086	NA	1/787	1/4234
Fusion	Breast	THOC2--RHOXF2B	HLA-B44:03	YECYGAVAY	0.8473	0.872	0.4456	160	0.1815	NA	1/787	1/4234
Fusion	Breast	PUM1--RPH3AL	HLA-A02:01	GLPWPEAAPV	0.9287	0.8727	1.4254	27.2	0.3698	NA	1/787	1/4234
Fusion	Breast	PUM1--RPH3AL	HLA-B40:01	GERPVPVSAL	0.9953	0.7167	0.0848	138	0.3062	NA	1/787	1/4234
Fusion	Breast	PUM1--RPH3AL	HLA-B58:01	HQMWDRGLPW	0.9628	0.992	1.2465	121.7	0.5466	NA	1/787	1/4234
Fusion	Breast	PUM1--RPH3AL	HLA-A02:01	QLVGVLQRL	0.974	0.5891	0.1734	160.5	1.4403	NA	1/787	1/4234
Fusion	Breast	PUM1--RPH3AL	HLA-B40:01	AECDGERPV	0.9948	0.8035	0.5829	277	0.4866	NA	1/787	1/4234
Fusion	Breast	PUM1--RPH3AL	HLA-B58:01	QMWDRGLPW	0.9826	0.9933	0.5231	94.2	0.4576	NA	1/787	1/4234
Fusion	Breast	PUM1--RPH3AL	HLA-C03:04	SALRGGAGL	0.9979	0.9877	0.4865	37.9	0.1715	NA	1/787	1/4234
Fusion	Breast	PUM1--RPH3AL	HLA-C16:01	SALRGGAGL	0.7483	0.982	0.5657	105.3	0.3645	NA	1/787	1/4234
Fusion	Breast	ANK3--CHN2	HLA-A02:05	AAAVDFTARV	0.9276	0.5584	0.9889	124.3	0.8007	NA	1/787	1/4234
Fusion	Breast	ANK3--CHN2	HLA-A31:01	RVENRPKYYGR	0.9899	0.6041	0.1149	26.3	0.2026	NA	1/787	1/4234
Fusion	Breast	ANK3--CHN2	HLA-A02:05	AAVDFTARV	0.9901	0.5919	0.0084	37.1	0.2449	NA	1/787	1/4234
Fusion	Breast	ANK3--CHN2	HLA-C15:02	AAVDFTARV	0.9998	0.9069	0.0452	135	0.1397	NA	1/787	1/4234
Fusion	Breast	ANK3--SP2	HLA-C07:01	HRPAWLPLLL	0.9981	0.7393	0.2009	135.3	0.0535	NA	1/787	1/4234
Fusion	Breast	ANK3--SP2	HLA-C07:01	HRPAWLPLL	0.9977	0.7991	0.0904	61.2	0.019	NA	1/787	1/4234
Fusion	Breast	ARHGEF18--AAMDC	HLA-A31:01	KGWNTGGTVR	0.9327	0.7732	0.8108	104	0.779	NA	1/787	1/4234
Fusion	Breast	CDCA7L--MPP6	HLA-C07:01	TRYQAHERL	0.9971	0.5913	0.0875	114.9	0.045	NA	1/787	1/4234
Fusion	Breast	CDH1--NPFFR2	HLA-C15:02	RGWPFGNTM	0.9142	0.9892	0.2138	415.8	0.4465	NA	1/787	1/4234
Fusion	Breast	ESR1--UTRN	HLA-C15:02	VSAGQQYAV	0.9995	0.8912	0.6854	389.3	0.42	NA	1/787	1/4234
Fusion	Breast	ESYT2--CPED1	HLA-A31:01	SARNLPANR	0.9766	0.6518	0.259	31	0.2437	NA	1/787	1/4234
Fusion	Breast	OSBPL3--CORIN	HLA-C07:01	SRQSWTPAL	0.9977	0.6583	0.1418	57.2	0.0176	NA	1/787	1/4234
Fusion	Breast	RAPGEF5--PLPP4	HLA-A31:01	QLPFRALASR	0.9467	0.8137	1.0837	210.4	1.2496	NA	1/787	1/4234
Fusion	Breast	RAPGEF5--PLPP4	HLA-A31:01	CTASPRVGGER	0.9863	0.6875	1.5977	305.6	1.5818	NA	1/787	1/4234
Fusion	Breast	RAPGEF5--PLPP4	HLA-A31:01	SQLPFRALASR	0.9896	0.8221	0.3057	72.2	0.586	NA	1/787	1/4234
Fusion	Breast	RAPGEF5--PLPP4	HLA-A02:05	SQLPFRALA	0.7634	0.7551	0.6392	369.5	1.9634	NA	1/787	1/4234
Fusion	Breast	RAPGEF5--PLPP4	HLA-A31:01	RASCTASPR	0.9919	0.5152	0.433	19.1	0.1349	NA	1/787	1/4234
Fusion	Breast	TNS3--ZNRF2	HLA-A31:01	VVVIHCRLHR	0.9486	0.555	0.879	69.9	0.5717	NA	1/787	1/4234
Fusion	Breast	UTRN--LYRM4	HLA-A02:05	TQLEKLSKEV	0.8801	0.5698	1.1888	144.1	0.9101	NA	1/787	1/4234
Fusion	Breast	LSM14A--ACTN4	HLA-A02:01	ALAKDLHGMV	0.8729	0.6399	1.1173	62.9	0.7622	NA	1/787	1/4234
Fusion	Breast	LSM14A--ACTN4	HLA-A02:01	ALAKDLHGM	0.9134	0.5552	0.0412	69.5	0.8235	NA	1/787	1/4234
Fusion	Breast	HCFC1--IRAK1	HLA-B57:01	SSPKHCGLCW	0.9991	0.9785	0.3461	177.1	0.3502	NA	1/787	1/4234
Fusion	Breast	HCFC1--IRAK1	HLA-B57:01	TSGQPQPHPW	0.9994	0.9383	0.4883	185	0.3613	NA	1/787	1/4234
Fusion	Breast	HCFC1--IRAK1	HLA-B57:01	STSGQPQPHPW	0.9998	0.9157	0.4196	485.9	0.7325	NA	1/787	1/4234
Fusion	Breast	HCFC1--IRAK1	HLA-B57:01	VSSPKHCGLCW	0.9999	0.9719	0.1977	168.1	0.3369	NA	1/787	1/4234
Fusion	Breast	HCFC1--IRAK1	HLA-A02:01	WLLCSERLL	0.9344	0.5632	1.4821	89.8	0.9878	NA	1/787	1/4234
Fusion	Breast	LMNA--SYT11	HLA-B57:01	SSRCLCHISLW	0.9999	0.9814	0.5399	60.6	0.1602	NA	1/787	1/4234
Fusion	Breast	LMNA--SYT11	HLA-B57:01	RCLCHISLW	0.9991	0.955	0.5279	56.9	0.1511	NA	1/787	1/4234
Fusion	Breast	STUB1--RAB40C	HLA-B57:01	RAIGILLVY	0.9978	0.8651	0.0299	169.2	0.3385	NA	1/787	1/4234
Fusion	Breast	WFDC2--PI3	HLA-A02:01	ATFCSLPNV	0.975	0.5463	0.3089	31	0.415	NA	1/787	1/4234
Fusion	Breast	DCP2--REEP5	HLA-A30:01	RIKAIESPNK	0.9987	0.8798	0.3956	14.5	0.0465	NA	1/787	1/4234
Fusion	Breast	ERGIC1--JAKMIP2	HLA-B35:03	MPFDFRREF	0.9936	0.9592	0.0131	141.3	0.0291	NA	1/787	1/4234
Fusion	Breast	FGF12--SYN3	HLA-A02:01	SVTAPHFPV	0.8565	0.5082	1.0837	146.4	1.358	NA	1/787	1/4234
Fusion	Breast	RFX3--SLC24A2	HLA-C15:02	RASPATPSA	0.9991	0.8327	0.7329	320.2	0.3495	NA	1/787	1/4234
Fusion	Breast	RNF114--PTPN1	HLA-C15:02	FSYDTFVDI	0.9986	0.7176	0.4078	57.9	0.0469	NA	1/787	1/4234
Fusion	Breast	TADA2A--MED24	HLA-A02:01	SLMTFLGTCV	0.9903	0.5322	0.262	8.5	0.0933	NA	1/787	1/4234
Fusion	Breast	TADA2A--MED24	HLA-A02:01	SLMTFLGTC	0.821	0.54	1.4776	204.8	1.6712	NA	1/787	1/4234
Fusion	Breast	TADA2A--MED24	HLA-A02:01	TLLSSQPSV	0.9959	0.6373	0.0658	18.5	0.249	NA	1/787	1/4234
Fusion	Breast	TADA2A--MED24	HLA-B35:01	QPSVSLMTF	0.986	0.8539	0.2636	24.1	0.097	NA	1/787	1/4234
Fusion	Breast	TADA2A--MED24	HLA-C15:02	LSSQPSVSL	0.9994	0.8785	0.3413	91.4	0.0798	NA	1/787	1/4234
Fusion	Breast	TADA2A--MED24	HLA-C15:02	SSQPSVSLM	0.9987	0.8608	0.5941	158	0.1716	NA	1/787	1/4234
Fusion	Breast	FOXO3--PPP1R9A	HLA-A32:01	SSAGWKLQI	0.9301	0.898	0.6929	289.8	0.4829	NA	1/787	1/4234
Fusion	Breast	GRK2--IQGAP1	HLA-A32:01	KILLPEPRW	0.9897	0.9915	0.0356	286.5	0.4786	NA	1/787	1/4234
Fusion	Breast	PDXK--RRP1B	HLA-B15:01	VQFSNHTGGF	0.9996	0.6664	0.4646	18.3	0.0689	NA	1/787	1/4234
Fusion	Breast	USP13--MAP3K21	HLA-C03:04	FSYDSPLVQL	0.9998	0.9816	0.024	17.2	0.0709	NA	1/787	1/4234
Fusion	Breast	USP13--MAP3K21	HLA-C05:01	FSYDSPLVQL	0.9997	0.8713	0.0523	163	0.0813	NA	1/787	1/4234
Fusion	Breast	USP13--MAP3K21	HLA-A68:01	TVICQGRSHPR	0.9976	0.5272	0.356	74.8	0.7408	NA	1/787	1/4234
Fusion	Breast	USP13--MAP3K21	HLA-C03:04	FSYDSPLVQLL	0.9983	0.9846	0.1072	115.5	0.3963	NA	1/787	1/4234
Fusion	Breast	USP13--MAP3K21	HLA-A32:01	RSHPRSTAL	0.97	0.9415	0.6891	432.8	0.6744	NA	1/787	1/4234
Fusion	Breast	USP13--MAP3K21	HLA-C03:04	CAFSYDSPL	0.9987	0.9877	0.5815	11.7	0.0409	NA	1/787	1/4234
Fusion	Breast	USP13--MAP3K21	HLA-C03:04	LVQLLSQPL	0.9968	0.988	1.3306	201.5	0.5662	NA	1/787	1/4234
Fusion	Breast	USP13--MAP3K21	HLA-C03:04	RSHPRSTAL	0.9938	0.9871	0.3898	26	0.1142	NA	1/787	1/4234
Fusion	Breast	USP13--MAP3K21	HLA-C03:04	SAPHLLLTV	0.9405	0.9882	0.0904	359.2	0.8015	NA	1/787	1/4234
Fusion	Breast	USP13--MAP3K21	HLA-C03:04	STALSTSCL	0.988	0.9905	1.063	433.6	0.9051	NA	1/787	1/4234
Fusion	Breast	USP13--MAP3K21	HLA-C03:04	STSCLSVAL	0.9989	0.9849	0.7081	92.1	0.3442	NA	1/787	1/4234
Fusion	Breast	EGLN1--PGBD5	HLA-C03:03	VPWTSSSSL	0.9911	0.9817	1.0016	357.3	0.7989	NA	1/787	1/4234
Fusion	Breast	INPP5A--DLG2	HLA-B15:01	SQEHFTKYRY	0.9995	0.7688	0.4167	186.1	0.865	NA	1/787	1/4234
Fusion	Breast	INPP5A--DLG2	HLA-B15:01	KSQEHFTKY	0.9989	0.7701	0.0267	246.2	1.0678	NA	1/787	1/4234
Fusion	Breast	INPP5A--DLG2	HLA-C16:02	KSQEHFTKY	0.7306	0.9853	0.0131	412.5	0.4277	NA	1/787	1/4234
Fusion	Breast	MTSS1--ZC2HC1A	HLA-A02:01	VLSKLENCYL	0.8657	0.5544	0.678	229.2	1.7908	NA	1/787	1/4234
Fusion	Breast	MTSS1--ZC2HC1A	HLA-B07:02	APNQRMEV	0.9996	0.5172	0.4737	177.5	0.4364	NA	1/787	1/4234
Fusion	Breast	MTSS1--ZC2HC1A	HLA-B07:02	APNQRMEVL	0.9997	0.5776	0.0037	16.4	0.0553	NA	1/787	1/4234
Fusion	Breast	MTSS1--ZC2HC1A	HLA-C07:02	QRMEVLSKL	0.9969	0.9561	0.057	277.1	0.1819	NA	1/787	1/4234
Fusion	Breast	ATG5--RSPH10B	HLA-A31:01	RIYQPKIKK	0.9822	0.5139	0.024	200	1.207	NA	1/787	1/4234
Fusion	Breast	DHX35--DNTTIP1	HLA-A31:01	KMRKYMETLR	0.9826	0.6191	0.2856	6.6	0.0217	NA	1/787	1/4234
Fusion	Breast	DHX35--DNTTIP1	HLA-B07:02	QPRRVAAVTA	0.9981	0.5656	0.241	162.2	0.4097	NA	1/787	1/4234
Fusion	Breast	DHX35--DNTTIP1	HLA-C15:02	RVAAVTAYLL	0.9981	0.9188	1.6127	383.5	0.4139	NA	1/787	1/4234
Fusion	Breast	DHX35--DNTTIP1	HLA-B15:01	RVAAVTAY	0.999	0.9593	0.2526	94.5	0.5001	NA	1/787	1/4234
Fusion	Breast	DHX35--DNTTIP1	HLA-B07:02	RVAAVTAYL	0.9503	0.5127	1.3176	184	0.4471	NA	1/787	1/4234
Fusion	Breast	DHX35--DNTTIP1	HLA-B15:01	KMRKYMETL	0.9758	0.9131	0.8629	256.5	1.0997	NA	1/787	1/4234
Fusion	Breast	DHX35--DNTTIP1	HLA-B15:01	RVAAVTAYL	0.9372	0.9229	0.793	253	1.0891	NA	1/787	1/4234
Fusion	Breast	DHX35--DNTTIP1	HLA-B15:01	WMVEKMRKY	0.9657	0.8059	0.6079	87.7	0.4683	NA	1/787	1/4234
Fusion	Breast	DHX35--DNTTIP1	HLA-C03:03	AAVTAYLLI	0.9801	0.9856	0.4769	241.9	0.6354	NA	1/787	1/4234
Fusion	Breast	DHX35--DNTTIP1	HLA-C03:03	RVAAVTAYL	0.9786	0.992	0.3925	40.7	0.1811	NA	1/787	1/4234
Fusion	Breast	DHX35--DNTTIP1	HLA-C03:03	VAAVTAYLL	0.9985	0.9836	0.5328	48	0.2031	NA	1/787	1/4234
Fusion	Breast	DHX35--DNTTIP1	HLA-C15:02	AAVTAYLLI	0.9952	0.9065	0.276	296.3	0.3226	NA	1/787	1/4234
Fusion	Breast	DHX35--DNTTIP1	HLA-C15:02	KSFVLPSWM	0.974	0.902	0.8043	106.6	0.1031	NA	1/787	1/4234
Fusion	Breast	DHX35--DNTTIP1	HLA-C15:02	RVAAVTAYL	0.9985	0.9597	0.1775	38.5	0.0192	NA	1/787	1/4234
Fusion	Breast	DHX35--DNTTIP1	HLA-C15:02	VAAVTAYLL	0.9958	0.918	0.645	311.4	0.3398	NA	1/787	1/4234
Fusion	Breast	MED23--KLHL32	HLA-C15:02	KAMFSLCMV	0.9953	0.791	0.6252	78.3	0.0659	NA	1/787	1/4234
Fusion	Breast	RAE1--C20orf85	HLA-B15:01	SSYDWSKVF	0.9962	0.795	0.2913	89	0.4745	NA	1/787	1/4234
Fusion	Breast	RAE1--C20orf85	HLA-C03:03	SSYDWSKVF	0.9984	0.9822	0.193	56.3	0.234	NA	1/787	1/4234
Fusion	Breast	RAE1--C20orf85	HLA-C15:02	SSYDWSKVF	0.9565	0.7963	0.2868	295.6	0.3218	NA	1/787	1/4234
Fusion	Breast	SLC9A8--RAE1	HLA-A31:01	VAFLCGKWNR	0.9725	0.8769	0.7986	26.9	0.2082	NA	1/787	1/4234
Fusion	Breast	SLC9A8--RAE1	HLA-A31:01	TVAFLCGKWNR	0.959	0.8783	1.9682	186	1.1464	NA	1/787	1/4234
Fusion	Breast	SLC9A8--RAE1	HLA-A11:01	RTVAFLCGK	0.9988	0.5827	0.1807	7.1	0.0133	NA	1/787	1/4234
Fusion	Breast	SLC9A8--RAE1	HLA-A31:01	AFLCGKWNR	0.9788	0.8798	0.3956	21.3	0.1543	NA	1/787	1/4234
Fusion	Breast	SLC9A8--RAE1	HLA-A31:01	RTVAFLCGK	0.953	0.5508	0.3753	25.1	0.1902	NA	1/787	1/4234
Fusion	Breast	WDR70--PLCXD3	HLA-C03:03	MTCSNDAAL	0.9962	0.9855	0.6594	123.6	0.4144	NA	1/787	1/4234
Fusion	Breast	CACNB1--MLLT6	HLA-B07:02	AARWSPSGSL	0.9988	0.6939	1.3381	55.9	0.1884	NA	1/787	1/4234
Fusion	Breast	CACNB1--MLLT6	HLA-B07:02	APADGWGLPA	0.9872	0.6275	0.3398	87.3	0.2677	NA	1/787	1/4234
Fusion	Breast	CACNB1--MLLT6	HLA-B07:02	APATPAAPGL	0.9989	0.6686	0.3851	15.1	0.0488	NA	1/787	1/4234
Fusion	Breast	CACNB1--MLLT6	HLA-B07:02	QPAGRKLHPA	0.9964	0.5253	0.7247	380.6	0.7123	NA	1/787	1/4234
Fusion	Breast	CACNB1--MLLT6	HLA-B07:02	SPKPYRAAET	0.9945	0.644	0.8208	205.6	0.48	NA	1/787	1/4234
Fusion	Breast	CACNB1--MLLT6	HLA-B07:02	SPSAARAAAP	0.9889	0.7841	1.0978	371.2	0.7019	NA	1/787	1/4234
Fusion	Breast	CACNB1--MLLT6	HLA-B07:02	TPAAPGLPAA	0.9945	0.5733	0.1302	108.4	0.3148	NA	1/787	1/4234
Fusion	Breast	CACNB1--MLLT6	HLA-B07:02	SPSAARAAAPA	0.9998	0.8103	0.5723	108.2	0.3143	NA	1/787	1/4234
Fusion	Breast	CACNB1--MLLT6	HLA-B07:02	SPSAARAA	0.9996	0.6691	1.3306	256.4	0.5581	NA	1/787	1/4234
Fusion	Breast	CACNB1--MLLT6	HLA-A02:01	AVCGYPWPA	0.8726	0.804	0.555	59.7	0.7293	NA	1/787	1/4234
Fusion	Breast	CACNB1--MLLT6	HLA-B07:02	APATPAAPG	0.9932	0.5413	0.8169	221.9	0.5033	NA	1/787	1/4234
Fusion	Breast	CACNB1--MLLT6	HLA-B07:02	RAAAPATPA	0.9939	0.6539	1.3454	241.8	0.5359	NA	1/787	1/4234
Fusion	Breast	CACNB1--MLLT6	HLA-B07:02	SPKPYRAAE	0.9842	0.6248	1.205	214.8	0.4929	NA	1/787	1/4234
Fusion	Breast	CACNB1--MLLT6	HLA-B07:02	SPSAARAAA	0.9989	0.7534	0.3717	8.3	0.0165	NA	1/787	1/4234
Fusion	Breast	CACNB1--MLLT6	HLA-B07:02	TPAAPGLPA	0.9989	0.5656	0.1182	25.8	0.0943	NA	1/787	1/4234
Fusion	Breast	CACNB1--MLLT6	HLA-B07:02	TPAARWSPS	0.9951	0.5531	1.7612	146.4	0.384	NA	1/787	1/4234
Fusion	Breast	CACNB1--MLLT6	HLA-B27:05	ARWSPSGSL	0.9995	0.7077	0.4491	38.8	0.1037	NA	1/787	1/4234
Fusion	Breast	CACNB1--MLLT6	HLA-B27:05	GQWRWPQRR	0.9847	0.6291	0.1641	401.6	1.0586	NA	1/787	1/4234
Fusion	Breast	CACNB1--MLLT6	HLA-B27:05	WRWPQRRDR	0.9937	0.5433	0.8771	124.5	0.412	NA	1/787	1/4234
Fusion	Breast	PMEPA1--PTGIS	HLA-B27:05	KRSLFQSMEIR	0.9999	0.9354	0.9495	286.2	0.8216	NA	1/787	1/4234
Fusion	Breast	PMEPA1--PTGIS	HLA-B27:05	SRCLLAPAL	0.9958	0.9017	0.4548	88.6	0.2937	NA	1/787	1/4234
Fusion	Breast	RARA--ZNF595	HLA-B07:02	TPSPARTRNI	0.9931	0.6835	0.2882	171.5	0.4261	NA	1/787	1/4234
Fusion	Breast	TMEM159--DNAH3	HLA-C07:02	WFSPRFFFL	0.7378	0.955	1.3768	96.2	0.0526	NA	1/787	1/4234
Fusion	Breast	USP15--CDH4	HLA-B07:02	GPRGHNMRPT	0.9916	0.6898	1.314	246.4	0.5429	NA	1/787	1/4234
Fusion	Breast	USP15--CDH4	HLA-B27:05	MRPTAWTSKL	0.9971	0.7664	1.12	100.4	0.335	NA	1/787	1/4234
Fusion	Breast	USP15--CDH4	HLA-C07:02	MRPTAWTSKL	0.9563	0.9741	0.7415	464.4	0.3026	NA	1/787	1/4234
Fusion	Breast	USP15--CDH4	HLA-B07:02	GPRGHNMRPTA	0.9999	0.7229	0.6674	367.2	0.6975	NA	1/787	1/4234
Fusion	Breast	USP15--CDH4	HLA-B07:02	RPTAWTSKL	0.9993	0.7282	0.0255	7.4	0.0138	NA	1/787	1/4234
Fusion	Breast	NSMAF--DEPTOR	HLA-C04:01	SFDKNRLRL	0.9793	0.6443	0.3235	371.5	0.0095	NA	1/787	1/4234
Fusion	Breast	RMDN1--ESRP1	HLA-B35:01	HATAKDHRF	0.7418	0.732	0.6973	317.3	0.6628	NA	1/787	1/4234
Fusion	Breast	TNFRSF10A--BIN3	HLA-A11:01	GSPRNRLCPK	0.983	0.6932	1.3988	255.6	1.1801	NA	1/787	1/4234
Fusion	Breast	VPS13B--DACH1	HLA-C03:04	TVFENYCHV	0.8947	0.9872	1.3843	336	0.7722	NA	1/787	1/4234
Fusion	Breast	ARHGEF18--INSR	HLA-B57:01	GTTSLGCMSW	0.9984	0.9934	0.259	33.1	0.0858	NA	1/787	1/4234
Fusion	Breast	ARHGEF18--INSR	HLA-B57:01	SGTTSLGCMSW	0.999	0.9669	0.5038	480.7	0.7265	NA	1/787	1/4234
Fusion	Breast	ARHGEF18--INSR	HLA-B57:01	TSLGCMSW	0.9996	0.9978	0.6556	196	0.3759	NA	1/787	1/4234
Fusion	Breast	ARHGEF18--INSR	HLA-B57:01	LVQQCVPAW	0.9764	0.985	0.2913	186.2	0.3629	NA	1/787	1/4234
Fusion	Breast	ARHGEF18--INSR	HLA-B57:01	TTSLGCMSW	0.9925	0.9975	0.3089	53.9	0.1448	NA	1/787	1/4234
Fusion	Breast	CWC25--FBXO47	HLA-B57:01	VPGYGLQDRW	0.9962	0.9547	0.7304	266.2	0.4672	NA	1/787	1/4234
Fusion	Breast	CWC25--FBXO47	HLA-B57:01	KVPGYGLQDRW	1	0.9599	0.1168	108.9	0.2444	NA	1/787	1/4234
Fusion	Breast	TCF3--SYTL5	HLA-B57:01	RGVSHGKNVDW	0.9999	0.9826	0.4659	472.3	0.7165	NA	1/787	1/4234
Fusion	Breast	TMX1--C14orf166	HLA-B07:02	RPQPYPYPSI	0.968	0.566	0.0255	36.6	0.1254	NA	1/787	1/4234
Fusion	Breast	FTSJ3--SCN4A	HLA-B08:01	QLRRPCPL	0.9978	0.6138	1.3729	33.5	0.0555	NA	1/787	1/4234
Fusion	Breast	FTSJ3--SCN4A	HLA-B08:01	AQLRRPCPL	0.9687	0.6701	0.8378	150.3	0.2685	NA	1/787	1/4234
Fusion	Breast	AACS--DNAH10	HLA-B15:17	CTWKVLTGI	0.9574	0.9439	1.0192	177.4	1.7555	NA	1/787	1/4234
Fusion	Breast	LRIG3--DTX3	HLA-B15:17	VSANITLLSLF	0.9996	0.9061	1.5795	19.1	0.3128	NA	1/787	1/4234
Fusion	Breast	LRIG3--DTX3	HLA-B15:17	ITLLSLFGY	0.9785	0.5559	0.6191	10.2	0.138	NA	1/787	1/4234
Fusion	Breast	SYAP1--REPS2	HLA-A24:02	VWCKAGWLFW	0.9931	0.7	0.8247	172.3	0.3229	NA	1/787	1/4234
Fusion	Breast	SYAP1--REPS2	HLA-B15:17	RTVWCKAGWLF	0.9886	0.9771	0.5181	29	0.4796	NA	1/787	1/4234
Fusion	Breast	SYAP1--REPS2	HLA-A24:02	VWCKAGWLF	0.9906	0.5803	0.4232	19.4	0.0362	NA	1/787	1/4234
Fusion	Breast	SYAP1--REPS2	HLA-B15:17	RTVWCKAGW	0.9905	0.9865	0.0226	6.8	0.0729	NA	1/787	1/4234
Fusion	Breast	TNPO3--RCAN1	HLA-B15:17	ATRPNLSPSL	0.9924	0.7694	0.9711	218.6	1.9682	NA	1/787	1/4234
Fusion	Breast	TNPO3--RCAN1	HLA-B15:17	MTRTSPFSI	0.9712	0.894	0.5165	16.8	0.2712	NA	1/787	1/4234
Fusion	Breast	TNPO3--RCAN1	HLA-C07:01	FRLATRPNL	0.9989	0.6627	0.1168	54.6	0.0167	NA	1/787	1/4234
Fusion	Breast	TNPO3--RCAN1	HLA-C07:01	GRMTRTSPF	0.9926	0.589	0.4153	440.2	0.1504	NA	1/787	1/4234
Fusion	Breast	TNPO3--RCAN1	HLA-C07:01	TRPNLSPSL	0.996	0.6095	0.1212	448.4	0.1533	NA	1/787	1/4234
Fusion	Breast	TNPO3--RCAN1	HLA-C07:01	TRTSPFSIL	0.9976	0.6598	0.4563	266.4	0.0967	NA	1/787	1/4234
Fusion	Breast	ELMO2--STAP1	HLA-B15:01	HLRSIILNY	0.9995	0.7067	0.0412	54	0.2797	NA	1/787	1/4234
Fusion	Breast	SFRP1--ARMC5	HLA-A02:01	HLCASEFVTI	0.9908	0.5792	0.8271	204.2	1.6681	NA	1/787	1/4234
Fusion	Breast	SFRP1--ARMC5	HLA-B44:03	SEFVTILQCM	0.9876	0.9352	0.6973	120.9	0.1402	NA	1/787	1/4234
Fusion	Breast	SFRP1--ARMC5	HLA-C03:04	CASEFVTIL	0.9997	0.9909	0.1072	48.4	0.2047	NA	1/787	1/4234
Fusion	Breast	SFRP1--ARMC5	HLA-C16:01	CASEFVTIL	0.96	0.9829	0.1196	98.8	0.3443	NA	1/787	1/4234
Fusion	Breast	ATXN2--CCDC59	HLA-A32:01	SSYAKRDLSF	0.9851	0.7199	1.2933	452.4	0.6991	NA	1/787	1/4234
Fusion	Breast	CABLES1--TTC39C	HLA-C03:03	TQVGNHSPL	0.9841	0.989	1.2529	176.4	0.5182	NA	1/787	1/4234
Fusion	Breast	DCTN5--UBFD1	HLA-A32:01	VLNGKAFQL	0.9739	0.9427	0.0734	492.9	0.751	NA	1/787	1/4234
Fusion	Breast	GATA3--TAF3	HLA-A32:01	KLHNIRDEW	0.9963	0.9204	0.0121	67.5	0.1237	NA	1/787	1/4234
Fusion	Breast	TTLL5--TSHR	HLA-C03:03	SSSPGSRKL	0.9965	0.9922	0.3736	276.3	0.6884	NA	1/787	1/4234
Fusion	Breast	FUBP1--SLC44A5	HLA-A02:01	VLYDLPTV	0.9976	0.7894	0.3753	99.6	1.0557	NA	1/787	1/4234
Fusion	Breast	FUBP1--SLC44A5	HLA-A02:01	SVLYDLPTV	0.9791	0.7001	0.0084	20.1	0.2739	NA	1/787	1/4234
Fusion	Breast	FUBP1--SLC44A5	HLA-C03:04	LSYRQPGPL	0.9977	0.9895	0.7749	41	0.182	NA	1/787	1/4234
Fusion	Breast	PLCZ1--PTHLH	HLA-C03:04	ITLTIREAL	0.9995	0.9739	0.4737	251.9	0.6515	NA	1/787	1/4234
Fusion	Breast	SPAG17--PCF11	HLA-A02:01	SLIAAQFNQA	0.9663	0.7098	0.5279	202	1.6568	NA	1/787	1/4234
Fusion	Breast	ARID2--ZNF641	HLA-A32:01	KQYYLRSQF	0.9814	0.8908	0.0315	26	0.0467	NA	1/787	1/4234
Fusion	Breast	C2CD3--RNF169	HLA-A32:01	KQFTSYLTDF	0.9805	0.6463	0.678	115.5	0.1966	NA	1/787	1/4234
Fusion	Breast	C2CD3--RNF169	HLA-A32:01	TSYLTDFIF	0.8435	0.8445	1.8266	394.1	0.6217	NA	1/787	1/4234
Fusion	Breast	NMD3--CASD1	HLA-A32:01	VAMIRVNTF	0.9633	0.9739	0.057	313.2	0.5148	NA	1/787	1/4234
Fusion	Breast	NMD3--CASD1	HLA-C03:04	VAMIRVNTF	0.9951	0.9951	0.0166	45.7	0.1957	NA	1/787	1/4234
Fusion	Breast	DDX39B--PRPH2	HLA-B07:02	VPGGRRPFQL	0.9989	0.5454	0.4845	105.7	0.3089	NA	1/787	1/4234
Fusion	Breast	DDX39B--PRPH2	HLA-B07:02	VPGGRRPFQLL	0.9999	0.5856	0.4933	274.4	0.5837	NA	1/787	1/4234
Fusion	Breast	KDM2A--RPS6KB2	HLA-C07:02	IRYSQRLPPF	0.9835	0.905	0.6996	407	0.268	NA	1/787	1/4234
Fusion	Breast	KDM2A--RPS6KB2	HLA-C07:02	RYSQRLPPF	0.6282	0.9173	0.4865	164.2	0.1006	NA	1/787	1/4234
Fusion	Breast	MBD2--DOCK2	HLA-B07:02	QPRQIPFLGA	0.9861	0.5764	0.2543	477.7	0.8083	NA	1/787	1/4234
Fusion	Breast	MBD2--DOCK2	HLA-B07:02	QPRQIPFL	0.9993	0.5941	0.5512	272.2	0.5808	NA	1/787	1/4234
Fusion	Breast	PCF11--SPON1	HLA-C05:01	KSDEVLTVI	0.9999	0.7805	0.0583	26.6	0.0152	NA	1/787	1/4234
Fusion	Breast	PLEKHA7--SMPD1	HLA-B39:01	IEIGGFYAL	0.8255	0.9103	0.433	76.3	0.0795	NA	1/787	1/4234
Fusion	Breast	TOX3--ITFG1	HLA-C12:03	LANSANPHI	0.8386	0.9866	0.8228	270.3	1.0091	NA	1/787	1/4234
Fusion	Breast	IQCB1--ILDR1	HLA-A31:01	SMLEIVHPGER	0.991	0.5987	0.5534	222.5	1.2967	NA	1/787	1/4234
Fusion	Breast	IQCB1--ILDR1	HLA-C03:03	IVHPGERQL	0.9985	0.9621	0.1704	162	0.4903	NA	1/787	1/4234
Fusion	Breast	TBCD--SLC9A3R1	HLA-A31:01	AFQENVGRQR	0.9533	0.8721	0.5231	243.5	1.3794	NA	1/787	1/4234
Fusion	Breast	GALNT7--SAP30	HLA-C07:02	SRMRARHLY	0.8461	0.9251	0.1872	122.7	0.0661	NA	1/787	1/4234
Fusion	Breast	SMARCA4--RASAL3	HLA-A02:01	FLIIVPLSVL	0.9788	0.6665	0.5144	72.3	0.8464	NA	1/787	1/4234
Fusion	Breast	SMARCA4--RASAL3	HLA-A02:01	SVLEGPGWEV	0.9838	0.7241	0.23	24.3	0.3331	NA	1/787	1/4234
Fusion	Breast	SMARCA4--RASAL3	HLA-A32:01	RLLVPTRSTTF	0.9793	0.8762	0.0919	340.9	0.5526	NA	1/787	1/4234
Fusion	Breast	SMARCA4--RASAL3	HLA-A02:01	FLIIVPLSV	0.9964	0.6344	0.024	9.6	0.1118	NA	1/787	1/4234
Fusion	Breast	SMARCA4--RASAL3	HLA-A02:01	VLEGPGWEV	0.9892	0.7925	0.3235	94.7	1.023	NA	1/787	1/4234
Fusion	Breast	CACNA1G--PRAC2	HLA-B18:01	IEYHEQVPY	0.9978	0.874	0.1566	40.5	0.0292	NA	1/787	1/4234
Fusion	Breast	CACNA1G--PRAC2	HLA-B44:03	IEYHEQVPY	0.9772	0.8924	0.1963	267.8	0.2739	NA	1/787	1/4234
Fusion	Breast	CACNA1G--PRAC2	HLA-C16:01	MGIEYHEQV	0.7993	0.9817	0.9336	388.5	1.137	NA	1/787	1/4234
Fusion	Breast	CDK12--IKZF3	HLA-A11:01	RSLSRSPLPR	0.9815	0.591	0.5195	96.3	0.5664	NA	1/787	1/4234
Fusion	Breast	DSTYK--NAV1	HLA-B40:02	AETGLQAAGM	0.9949	0.7604	0.4277	265.1	0.8272	NA	1/787	1/4234
Fusion	Breast	DSTYK--NAV1	HLA-A02:01	SAMPQTISV	0.9315	0.6554	0.0084	184	1.5622	NA	1/787	1/4234
Fusion	Breast	DSTYK--NAV1	HLA-C02:02	SAMPQTISV	0.9956	0.9749	0.0142	156.7	0.0762	NA	1/787	1/4234
Fusion	Breast	HOOK1--RAB6A	HLA-A02:01	SLMIWLFRRV	0.9335	0.729	0.8468	30.5	0.4086	NA	1/787	1/4234
Fusion	Breast	HOOK1--RAB6A	HLA-A02:01	LMIWLFRRV	0.9547	0.621	0.3974	79.4	0.9025	NA	1/787	1/4234
Fusion	Breast	HOOK1--RAB6A	HLA-A02:01	WLFRRVAAA	0.9635	0.768	0.3806	25	0.3427	NA	1/787	1/4234
Fusion	Breast	PLXNA2--DUSP10	HLA-A02:01	YLSPSPPPL	0.997	0.6262	0.0962	6	0.0491	NA	1/787	1/4234
Fusion	Breast	PLXNA2--DUSP10	HLA-C02:02	YLSPSPPPL	0.957	0.9662	0.3529	113.2	0.0489	NA	1/787	1/4234
Fusion	Breast	SORBS2--AIF1	HLA-A02:01	NLLAADIMSL	0.9783	0.5252	0.6488	65.4	0.7861	NA	1/787	1/4234
Fusion	Breast	SORBS2--AIF1	HLA-C02:02	LLAADIMSL	0.8195	0.9845	0.713	476.2	0.3293	NA	1/787	1/4234
Fusion	Breast	DDX5--ADAM18	HLA-B08:01	MWEQHFLAL	0.7058	0.9187	0.6233	347.1	0.5638	NA	1/787	1/4234
Fusion	Breast	IKZF3--BCAS3	HLA-B08:01	SPFNLRHLFM	0.8412	0.54	0.7473	233.6	0.4085	NA	1/787	1/4234
Fusion	Breast	IKZF3--BCAS3	HLA-C07:01	GRWSSPFNL	0.9962	0.8398	0.0643	496.5	0.1692	NA	1/787	1/4234
Fusion	Breast	ELK3--AMDHD1	HLA-C07:02	RYYYDKRWIY	0.89	0.8664	0.296	454.2	0.2961	NA	1/787	1/4234
Fusion	Breast	NF1--CLTC	HLA-B44:02	FEVDPTSSRTW	0.9999	0.6326	0.0052	88.7	0.1136	NA	1/787	1/4234
Fusion	Breast	FBXL20--SOCS7	HLA-B15:01	SAMSNPSSTF	0.9996	0.8461	0.637	24.2	0.1057	NA	1/787	1/4234
Fusion	Breast	FBXL20--SOCS7	HLA-C03:04	SAMSNPSSTF	0.9995	0.9804	0.5779	127	0.4219	NA	1/787	1/4234
Fusion	Breast	FBXL20--SOCS7	HLA-B15:01	AMSNPSSTF	0.999	0.8505	0.1112	9.7	0.0172	NA	1/787	1/4234
Fusion	Breast	FBXL20--SOCS7	HLA-C03:04	AMSNPSSTF	0.9277	0.9793	0.7683	458.3	0.9477	NA	1/787	1/4234
Fusion	Breast	FBXL20--SOCS7	HLA-C03:04	KATDCHQLL	0.9964	0.9757	0.2382	208.9	0.5792	NA	1/787	1/4234
Fusion	Breast	CHM--ABCB7	HLA-B27:05	GRRVLHVDSF	0.9995	0.8934	0.4167	157.7	0.5116	NA	1/787	1/4234
Fusion	Breast	CHM--ABCB7	HLA-B27:05	RRVLHVDSFQS	0.9998	0.5531	1.6762	438.1	1.127	NA	1/787	1/4234
Fusion	Breast	CHM--ABCB7	HLA-B27:05	RRVLHVDSF	0.9997	0.8783	0.0441	37.8	0.0999	NA	1/787	1/4234
Fusion	Breast	CA3--MYBL1	HLA-C14:02	IFLKSQPLAF	0.8653	0.94	0.1401	161	0.5013	NA	1/787	1/4234
Fusion	Breast	CA3--MYBL1	HLA-C14:02	FLKSQPLAF	0.5978	0.9556	0.2197	56.4	0.1866	NA	1/787	1/4234
Fusion	Breast	CCNY--DENND1A	HLA-C07:01	ARTSHSCSL	0.9913	0.7676	0.4529	366.4	0.1302	NA	1/787	1/4234
Fusion	Breast	CHMP4B--CBFA2T2	HLA-A24:02	QWLQYRAILW	0.9805	0.5512	1.1446	222.5	0.391	NA	1/787	1/4234
Fusion	Breast	CHMP4B--CBFA2T2	HLA-C14:02	SYRHQRTL	0.9068	0.903	0.9525	424.4	1.1745	NA	1/787	1/4234
Fusion	Breast	RNGTT--RRAGD	HLA-C14:02	FWTSVTPSAL	0.9678	0.9744	0.6154	133.6	0.4317	NA	1/787	1/4234
Fusion	Breast	WWP2--TSEN54	HLA-A23:01	TWMPACSTWRM	0.9792	0.751	0.721	344.6	0.8203	NA	1/787	1/4234
Fusion	Breast	WWP2--TSEN54	HLA-A24:02	TWMPACSTWRM	0.9924	0.8555	0.7749	431.2	0.5971	NA	1/787	1/4234
Fusion	Breast	WWP2--TSEN54	HLA-A24:02	TWMPACSTW	0.9934	0.7455	0.1383	26.5	0.056	NA	1/787	1/4234
Fusion	Breast	WWP2--TSEN54	HLA-C14:02	RVWQPPAHL	0.6565	0.9909	0.3318	212.2	0.6405	NA	1/787	1/4234
Fusion	Breast	MLLT6--KIRREL3	HLA-A32:01	KMCRLMTPSSW	0.9959	0.9955	0.8108	347.9	0.5616	NA	1/787	1/4234
Fusion	Breast	MLLT6--KIRREL3	HLA-A32:01	RLMTPSSW	0.9974	0.9874	0.4426	345	0.5579	NA	1/787	1/4234
Fusion	Breast	MLLT6--KIRREL3	HLA-C03:04	MTPSSWGAL	0.9859	0.9671	0.6079	230	0.6152	NA	1/787	1/4234
Fusion	Breast	NCOR1--ACER3	HLA-B40:01	REWEGSFLP	0.9689	0.5023	0.0658	317.5	0.5302	NA	1/787	1/4234
Fusion	Breast	SRGAP2--ELF3	HLA-B07:02	QPLPPRQL	0.9977	0.6471	0.5077	487.4	0.8184	NA	1/787	1/4234
Fusion	Breast	SRGAP2--ELF3	HLA-C07:02	RRSPLPWQL	0.969	0.9697	0.0201	117.6	0.0635	NA	1/787	1/4234
Fusion	Breast	RECQL--PEMT	HLA-B15:01	ASVSGRLLRY	0.9981	0.8585	0.5795	263.9	1.1241	NA	1/787	1/4234
Fusion	Breast	RECQL--PEMT	HLA-A02:01	ALQLLCTGV	0.9425	0.7331	0.4382	55.4	0.6845	NA	1/787	1/4234
Fusion	Breast	RECQL--PEMT	HLA-B15:01	ALLECGCTM	0.9216	0.9481	0.8515	158.3	0.7651	NA	1/787	1/4234
Fusion	Breast	RECQL--PEMT	HLA-B15:01	SVSGRLLRY	0.9926	0.8311	0.1581	400.8	1.49	NA	1/787	1/4234
Fusion	Breast	RECQL--PEMT	HLA-B35:01	HPAPELPAL	0.998	0.8956	0.0073	16	0.0653	NA	1/787	1/4234
Fusion	Breast	RECQL--PEMT	HLA-B35:01	MASVSGRLL	0.937	0.9262	1.0781	442.1	0.815	NA	1/787	1/4234
Fusion	Breast	RECQL--PEMT	HLA-C03:03	HPAPELPAL	0.9988	0.9897	0.0618	292.2	0.7116	NA	1/787	1/4234
Fusion	Breast	RECQL--PEMT	HLA-C03:03	MASVSGRLL	0.9992	0.9847	0.2653	16.8	0.0692	NA	1/787	1/4234
Fusion	Breast	AGAP1--ZC2HC1A	HLA-A02:01	LVWQEILPQV	0.9804	0.7217	0.3542	41.2	0.5339	NA	1/787	1/4234
Fusion	Breast	MARK4--CLASRP	HLA-B07:02	SPVPAGTWPSL	0.9998	0.6377	0.3413	42.6	0.1504	NA	1/787	1/4234
Fusion	Breast	MARK4--CLASRP	HLA-B07:02	VPAGTWPSL	0.9991	0.6159	0.0671	11.5	0.0314	NA	1/787	1/4234
Fusion	Breast	HDDC2--FAM47E	HLA-A02:01	ELLSKVLEV	0.9882	0.7035	0.0267	69.3	0.8215	NA	1/787	1/4234
Fusion	Breast	HDDC2--FAM47E	HLA-A02:01	ELWELLSKV	0.987	0.7077	0.1168	33.9	0.4502	NA	1/787	1/4234
Fusion	Breast	HDDC2--FAM47E	HLA-A02:01	ELYELWELL	0.9439	0.631	1.1651	251.2	1.9058	NA	1/787	1/4234
Fusion	Breast	SPIDR--RP1	HLA-A02:01	KLSELPKVTM	0.9882	0.899	0.2942	229.7	1.7933	NA	1/787	1/4234
Fusion	Breast	CHMP4B--CBFA2T2	HLA-C03:04	APAAAGTAAL	0.9902	0.9833	0.4311	242.1	0.6358	NA	1/787	1/4234
Fusion	Breast	CHMP4B--CBFA2T2	HLA-C03:04	AAAGTAAL	0.9999	0.9922	0.6212	388.1	0.8434	NA	1/787	1/4234
Fusion	Breast	CHMP4B--CBFA2T2	HLA-A11:01	AAAGTAALR	0.9911	0.6325	0.1465	314.9	1.3445	NA	1/787	1/4234
Fusion	Breast	FRMD8--MAST1	HLA-B45:01	HELPFYGAAA	0.9818	0.9826	0.0255	38.7	0.0395	NA	1/787	1/4234
Fusion	Breast	FRMD8--MAST1	HLA-B45:01	HELPFYGAAAA	0.9986	0.9888	0.0315	169.5	0.174	NA	1/787	1/4234
Fusion	Breast	FRMD8--MAST1	HLA-B45:01	HELPFYGAA	0.9908	0.9707	0.024	48.7	0.0536	NA	1/787	1/4234
Fusion	Breast	TUT1--BSCL2	HLA-C03:04	VVMDKDKVL	0.9962	0.9909	0.451	134.6	0.4383	NA	1/787	1/4234
Fusion	Breast	CDKAL1--RBM24	HLA-B35:01	CPLCLSAGF	0.9954	0.704	0.5619	24.8	0.099	NA	1/787	1/4234
Fusion	Breast	ENG--AK1	HLA-B35:01	FPTIGQPTLL	0.9901	0.9701	0.7247	201.1	0.4932	NA	1/787	1/4234
Fusion	Breast	ENG--AK1	HLA-B35:01	FPTIGQPTL	0.9958	0.979	0.0166	16.6	0.0685	NA	1/787	1/4234
Fusion	Breast	NUDT9--FAM13A	HLA-B35:01	IPGMAEMMF	0.9905	0.8485	0.5195	59.4	0.2217	NA	1/787	1/4234
Fusion	Breast	NUDT9--FAM13A	HLA-B35:01	WAIPGMAEM	0.9975	0.9168	0.0495	7	0.023	NA	1/787	1/4234
Fusion	Breast	ADGRV1--POLR3G	HLA-B08:01	QAKAHHSL	0.9994	0.7679	0.5512	40.6	0.0676	NA	1/787	1/4234
Fusion	Breast	ADGRV1--POLR3G	HLA-C16:01	KAHHSLIL	0.994	0.9918	0.6079	415.5	1.2055	NA	1/787	1/4234
Fusion	Breast	ADGRV1--POLR3G	HLA-B08:01	QAKAHHSLI	0.9912	0.6066	0.9173	320.5	0.5284	NA	1/787	1/4234
Fusion	Breast	ADGRV1--POLR3G	HLA-C16:01	TQAKAHHSL	0.9723	0.9873	0.9687	360.6	1.073	NA	1/787	1/4234
Fusion	Breast	SNRPG--PCYOX1	HLA-B44:03	VEIQQRCMKW	0.9979	0.9115	0.1418	75.8	0.0902	NA	1/787	1/4234
Fusion	Breast	SNRPG--PCYOX1	HLA-B08:01	ELRLVQTSM	0.9907	0.8331	0.4845	370.7	0.5929	NA	1/787	1/4234
Fusion	Breast	FCHSD2--NBPF4	HLA-B08:01	DMRLSRGPL	0.986	0.6784	0.5941	68.5	0.1193	NA	1/787	1/4234
Fusion	Breast	CLTB--SIL1	HLA-B42:01	APLPLCPAAV	0.806	0.7481	0.3806	89.8	0.4089	NA	1/787	1/4234
Fusion	Breast	CLTB--SIL1	HLA-B42:01	LPAAPLPL	0.9854	0.8817	0.463	17.5	0.0748	NA	1/787	1/4234
Fusion	Breast	CLTB--SIL1	HLA-B42:01	LPLCPAAV	0.9724	0.8048	0.9432	215.5	0.7398	NA	1/787	1/4234
Fusion	Breast	CLTB--SIL1	HLA-A30:01	RARGHTALR	0.9975	0.7365	0.3332	8.7	0.0224	NA	1/787	1/4234
Fusion	Breast	CLTB--SIL1	HLA-B42:01	APLPLCPAA	0.6007	0.6633	0.1514	172.7	0.6505	NA	1/787	1/4234
Fusion	Breast	MED24--CEP95	HLA-C12:03	YAISSQVLNV	0.9976	0.9445	0.5058	187	0.78	NA	1/787	1/4234
Fusion	Breast	MED24--CEP95	HLA-C12:03	YAISSQVL	0.9995	0.9393	0.1072	210.3	0.8555	NA	1/787	1/4234
Fusion	Breast	MED24--CEP95	HLA-C12:03	ISSQVLNVL	0.9932	0.9145	0.2352	68.6	0.3236	NA	1/787	1/4234
Fusion	Breast	BCAS3--APPBP2	HLA-B07:02	SPLHALPTGTL	0.9999	0.6373	0.2122	46.4	0.163	NA	1/787	1/4234
Fusion	Breast	KDM7A--SND1	HLA-A02:01	TLSAGCTSTV	0.9086	0.6239	0.5454	155.6	1.4142	NA	1/787	1/4234
Fusion	Breast	KDM7A--SND1	HLA-B07:02	SPRSTSPPNA	0.9985	0.5285	0.5829	42.4	0.1499	NA	1/787	1/4234
Fusion	Breast	KDM7A--SND1	HLA-B27:05	SRFHPQALNA	0.9996	0.7577	0.6949	391.8	1.0406	NA	1/787	1/4234
Fusion	Breast	KDM7A--SND1	HLA-B27:05	WRAWTRPATL	0.9998	0.8499	0.7473	14.9	0.0171	NA	1/787	1/4234
Fusion	Breast	KDM7A--SND1	HLA-B27:05	WRWRWRAWTR	0.9995	0.6717	1.2692	6.4	0.0075	NA	1/787	1/4234
Fusion	Breast	KDM7A--SND1	HLA-C07:02	WRAWTRPATL	0.997	0.9783	0.9971	220.8	0.1447	NA	1/787	1/4234
Fusion	Breast	KDM7A--SND1	HLA-B07:02	SPRSTSPPNAA	1	0.621	0.3041	55.6	0.1876	NA	1/787	1/4234
Fusion	Breast	KDM7A--SND1	HLA-B07:02	APTTSPCCL	0.995	0.5562	0.3639	340.5	0.6679	NA	1/787	1/4234
Fusion	Breast	KDM7A--SND1	HLA-B07:02	RAWTRPATL	0.9951	0.8594	0.0558	86.5	0.2657	NA	1/787	1/4234
Fusion	Breast	KDM7A--SND1	HLA-B07:02	RPATLSAGC	0.9817	0.6639	0.8562	201.4	0.4738	NA	1/787	1/4234
Fusion	Breast	KDM7A--SND1	HLA-B07:02	TSRFHPQAL	0.6475	0.6919	0.3769	247.5	0.5447	NA	1/787	1/4234
Fusion	Breast	KDM7A--SND1	HLA-B27:05	ARKLHFSPR	0.9972	0.8845	0.8087	348.6	0.9547	NA	1/787	1/4234
Fusion	Breast	KDM7A--SND1	HLA-C01:02	RAWTRPATL	0.6041	0.9751	0.033	391.2	0.0099	NA	1/787	1/4234
Fusion	Breast	KDM7A--SND1	HLA-C07:02	RAWTRPATL	0.9941	0.9758	0.0452	365.7	0.2417	NA	1/787	1/4234
Fusion	Breast	PITPNB--SBF1	HLA-B27:05	ARPLWVPLRL	0.9996	0.6736	0.1435	66.7	0.2215	NA	1/787	1/4234
Fusion	Breast	PITPNB--SBF1	HLA-B27:05	LRLWTRRPSL	0.9999	0.9114	0.8655	38.2	0.1015	NA	1/787	1/4234
Fusion	Breast	PITPNB--SBF1	HLA-B27:05	RRWRLWHLAR	0.9999	0.8132	0.5601	3.7	0.0053	NA	1/787	1/4234
Fusion	Breast	PITPNB--SBF1	HLA-B27:05	WRLWHLARPL	0.9997	0.9525	1.566	7.9	0.0084	NA	1/787	1/4234
Fusion	Breast	PITPNB--SBF1	HLA-A02:01	RLWHLARPLWV	0.9581	0.6339	1.6082	98.8	1.0501	NA	1/787	1/4234
Fusion	Breast	PITPNB--SBF1	HLA-B27:05	RRWRLWHLARP	0.9997	0.7954	1.6274	32.7	0.0729	NA	1/787	1/4234
Fusion	Breast	PITPNB--SBF1	HLA-B27:05	RRWRLWHL	0.9999	0.9642	0.7376	10.7	0.0096	NA	1/787	1/4234
Fusion	Breast	PITPNB--SBF1	HLA-A02:01	RLWHLARPL	0.9722	0.7203	0.367	62.9	0.7619	NA	1/787	1/4234
Fusion	Breast	PITPNB--SBF1	HLA-A02:01	RLWTRRPSL	0.9444	0.5387	0.2039	120.9	1.1955	NA	1/787	1/4234
Fusion	Breast	PITPNB--SBF1	HLA-B07:02	LARPLWVPL	0.9963	0.6664	0.5686	47.6	0.1666	NA	1/787	1/4234
Fusion	Breast	PITPNB--SBF1	HLA-B07:02	RLWTRRPSL	0.9351	0.5557	0.5941	132.7	0.3614	NA	1/787	1/4234
Fusion	Breast	PITPNB--SBF1	HLA-B07:02	RPLWVPLRL	0.9983	0.6956	0.0154	29.9	0.1079	NA	1/787	1/4234
Fusion	Breast	PITPNB--SBF1	HLA-B27:05	ARPLWVPLR	0.9977	0.6033	0.3639	370.6	1.0001	NA	1/787	1/4234
Fusion	Breast	PITPNB--SBF1	HLA-B27:05	RRWRLWHLA	0.9996	0.8181	0.6212	4.4	0.006	NA	1/787	1/4234
Fusion	Breast	PITPNB--SBF1	HLA-B27:05	WRRWRLWHL	0.9875	0.9633	1.0474	37	0.0958	NA	1/787	1/4234
Fusion	Breast	PITPNB--SBF1	HLA-C07:02	WRRWRLWHL	0.7522	0.9749	1.2796	214.1	0.14	NA	1/787	1/4234
Fusion	Breast	RBMS1--XIRP2	HLA-C03:04	LQAKRLLAL	0.9778	0.9776	0.4967	191.8	0.5484	NA	1/787	1/4234
Fusion	Breast	ANXA2--SMG1	HLA-A02:01	RMWALSPTVFA	0.9787	0.5541	1.2968	96.9	1.0377	NA	1/787	1/4234
Fusion	Breast	ANXA2--SMG1	HLA-A02:01	RMWALSPTV	0.9954	0.6594	0.0523	4	0.0194	NA	1/787	1/4234
Fusion	Breast	MAP7--ARG1	HLA-C12:03	AVRSETATF	0.8179	0.9674	0.0875	189.5	0.7887	NA	1/787	1/4234
Fusion	Breast	SYTL3--AIG1	HLA-C12:03	SLATHVKTF	0.8207	0.983	0.1383	465.6	1.4783	NA	1/787	1/4234
Fusion	Breast	CD9--PBXIP1	HLA-C03:02	WVREEGQAL	0.8964	0.9833	1.0955	81.8	0.3856	NA	1/787	1/4234
Fusion	Breast	SGPP2--ALG14	HLA-B15:03	GMHTVLYTKY	0.7592	0.562	0.8169	99.9	1.4172	NA	1/787	1/4234
Fusion	Breast	SGPP2--ALG14	HLA-B15:03	RLYTGMHTVLY	0.7919	0.6867	0.184	65.3	1.0759	NA	1/787	1/4234
Fusion	Breast	ATP2A2--RRP1	HLA-C06:02	FRYLAIGCGF	0.9195	0.9674	0.9663	353.7	0.1199	NA	1/787	1/4234
Fusion	Breast	ETFB--LIM2	HLA-B07:02	SPSASWAAAL	0.9981	0.6673	0.2882	9.8	0.0254	NA	1/787	1/4234
Fusion	Breast	ETFB--LIM2	HLA-A24:02	SWAAALGTGAF	0.9959	0.558	0.9315	257.8	0.4353	NA	1/787	1/4234
Fusion	Breast	ETFB--LIM2	HLA-B07:02	SPSASWAAA	0.9958	0.739	0.2151	23	0.0818	NA	1/787	1/4234
Fusion	Breast	IFT74--LDLRAD3	HLA-B07:02	RVATANPAV	0.9363	0.5666	1.8644	478.5	0.8091	NA	1/787	1/4234
Fusion	Breast	NEK9--TMED10	HLA-C07:02	YRRTEIAKV	0.633	0.9187	0.5296	375.7	0.2478	NA	1/787	1/4234
Fusion	Breast	SCAI--PPP6C	HLA-B07:02	KPPRKRRSSL	0.9978	0.6131	0.6038	15.1	0.0488	NA	1/787	1/4234
Fusion	Breast	SCAI--PPP6C	HLA-B07:02	PPRKRRSSL	0.9985	0.5999	0.7494	106.7	0.3112	NA	1/787	1/4234
Fusion	Breast	MED24--SSH2	HLA-C07:02	KYLPESNTL	0.5006	0.9801	0.0084	390.2	0.2572	NA	1/787	1/4234
Fusion	Breast	ACVR1B--PCBP2	HLA-B58:01	GSGPRGVQEW	0.996	0.894	0.2543	109.3	0.5047	NA	1/787	1/4234
Fusion	Breast	SLC24A3--PLCB4	HLA-B58:01	VCGLFAGQQW	0.9912	0.9946	0.7945	89.7	0.4424	NA	1/787	1/4234
Fusion	Breast	SLC24A3--PLCB4	HLA-B58:01	GVCGLFAGQQW	0.9978	0.9873	0.2025	459.3	1.3511	NA	1/787	1/4234
Fusion	Breast	SLC24A3--PLCB4	HLA-B58:01	CGLFAGQQW	0.9927	0.9953	0.6488	23	0.1537	NA	1/787	1/4234
Fusion	Breast	ANO9--DEAF1	HLA-B07:02	SPALTAAGRL	0.997	0.5089	0.5706	73.3	0.2331	NA	1/787	1/4234
Fusion	Breast	ASAP1--KCNH1	HLA-B07:02	RVLPKLPQKAL	0.9874	0.5705	0.7833	38.9	0.1356	NA	1/787	1/4234
Fusion	Breast	DCAF6--RCSD1	HLA-B07:02	VPLGGPAGRAV	0.9994	0.8118	0.2882	268.2	0.5752	NA	1/787	1/4234
Fusion	Breast	HSD17B3--ENPP2	HLA-B07:02	CVRAIPVAAM	0.9818	0.6082	1.9129	436.7	0.7694	NA	1/787	1/4234
Fusion	Breast	HSD17B3--ENPP2	HLA-B07:02	SPDLARAGAL	0.9991	0.6397	0.1132	7.6	0.0143	NA	1/787	1/4234
Fusion	Breast	HSD17B3--ENPP2	HLA-B07:02	TPPGPTSPDL	0.9553	0.5701	0.6252	247.5	0.5447	NA	1/787	1/4234
Fusion	Breast	HSD17B3--ENPP2	HLA-B07:02	SPDLARAGA	0.9948	0.6857	0.9762	217.9	0.4972	NA	1/787	1/4234
Fusion	Breast	HSD17B3--ENPP2	HLA-C07:02	VRAIPVAAM	0.8583	0.9661	0.057	174	0.1091	NA	1/787	1/4234
Fusion	Breast	PHF3--FNTA	HLA-B15:01	VVHLPVRDVY	0.9995	0.7938	0.9432	188.5	0.8735	NA	1/787	1/4234
Fusion	Breast	SCGB2A2--MGP	HLA-A31:01	MQIPSYPLSR	0.975	0.6517	0.2287	98.4	0.7467	NA	1/787	1/4234
Fusion	Breast	SCGB2A2--MGP	HLA-B44:03	GEMQIPSYPL	0.9632	0.9801	1.2493	61.4	0.0683	NA	1/787	1/4234
Fusion	Breast	SCGB2A2--MGP	HLA-B44:03	VEVFMNHMKAW	0.9977	0.9762	0.5886	75.1	0.0893	NA	1/787	1/4234
Fusion	Breast	SCGB2A2--MGP	HLA-B44:03	GEMQIPSY	0.9995	0.958	0.0344	211.6	0.2251	NA	1/787	1/4234
Fusion	Breast	SCGB2A2--MGP	HLA-B44:03	TDFANATPW	0.9653	0.9851	1.2561	196.3	0.2112	NA	1/787	1/4234
Fusion	Breast	SCGB2A2--MGP	HLA-C03:04	FANATPWFM	0.9988	0.9933	0.1336	14.7	0.0593	NA	1/787	1/4234
Fusion	Breast	SCGB2A2--MGP	HLA-C03:04	NLMNLIPSL	0.9599	0.9838	0.1566	476.1	0.977	NA	1/787	1/4234
Fusion	Breast	SCGB2A2--MGP	HLA-C03:04	RGSENALSL	0.989	0.9777	0.8378	350.8	0.7908	NA	1/787	1/4234
Fusion	Breast	SCGB2A2--MGP	HLA-C03:04	YPLSRDGEL	0.9968	0.957	1.0116	386.8	0.8415	NA	1/787	1/4234
Fusion	Breast	SCGB2A2--MGP	HLA-C16:01	ATPWFMDTM	0.5087	0.989	0.6314	285.8	0.9063	NA	1/787	1/4234
Fusion	Breast	SCGB2A2--MGP	HLA-C16:01	FANATPWFM	0.9374	0.9807	0.1212	20.8	0.0465	NA	1/787	1/4234
Fusion	Breast	SCGB2A2--MGP	HLA-C16:01	KAWNLMNLI	0.8316	0.982	0.7081	159.3	0.5414	NA	1/787	1/4234
Fusion	Breast	SCGB2A2--MGP	HLA-C16:01	NLMNLIPSL	0.7957	0.9794	0.1418	177.7	0.595	NA	1/787	1/4234
Fusion	Breast	SCGB2A2--MGP	HLA-C16:01	RGSENALSL	0.9535	0.9832	0.5328	61.6	0.21	NA	1/787	1/4234
Fusion	Breast	SCGB2A2--MGP	HLA-C16:01	TSSIGKPVM	0.6597	0.9562	0.4737	372.3	1.0955	NA	1/787	1/4234
Fusion	Breast	MYO9B--PNN	HLA-B57:01	HIFKLEQAW	0.9989	0.9965	0.0979	91.2	0.2182	NA	1/787	1/4234
Fusion	Breast	PRKAG2--VPS50	HLA-A02:01	SLRVHIPEV	0.9398	0.8077	0.0037	57.5	0.7058	NA	1/787	1/4234
Fusion	Breast	CHMP4B--ZNF341	HLA-B42:01	KPGMDNQTVL	0.5686	0.5295	0.5924	63	0.3006	NA	1/787	1/4234
Fusion	Breast	FOXK2--MADCAM1	HLA-B07:02	LPGARPPAGL	0.9993	0.5723	0.5094	114.9	0.3282	NA	1/787	1/4234
Fusion	Breast	FOXK2--MADCAM1	HLA-B07:02	LPRVPAQPDL	0.9955	0.6307	0.1168	7.5	0.014	NA	1/787	1/4234
Fusion	Breast	FOXK2--MADCAM1	HLA-B42:01	LPGARPPAGL	0.9674	0.7136	0.5165	47.8	0.2406	NA	1/787	1/4234
Fusion	Breast	FOXK2--MADCAM1	HLA-B42:01	LPRVPAQPDL	0.9061	0.6095	0.1272	10.2	0.0331	NA	1/787	1/4234
Fusion	Breast	FOXK2--MADCAM1	HLA-B07:02	APPLQLPRVPA	0.999	0.7566	1.4821	254.5	0.5552	NA	1/787	1/4234
Fusion	Breast	FOXK2--MADCAM1	HLA-B42:01	LPGASRHHL	0.9611	0.7189	0.3427	11.1	0.037	NA	1/787	1/4234
Fusion	Breast	FOXK2--MADCAM1	HLA-B42:01	LPGASRQDL	0.9311	0.6511	0.3514	30.7	0.1549	NA	1/787	1/4234
Fusion	Breast	FOXK2--MADCAM1	HLA-B42:01	LPGVSRHHL	0.9792	0.7122	0.3769	11.6	0.0391	NA	1/787	1/4234
Fusion	Breast	CD58--RAD51B	HLA-B07:02	SPGFSGRPGV	0.9881	0.586	1.2529	85	0.2619	NA	1/787	1/4234
Fusion	Breast	DZIP1--PCCA	HLA-B15:01	YQVLHIILHY	0.9998	0.6071	0.1761	19.2	0.0744	NA	1/787	1/4234
Fusion	Breast	DZIP1--PCCA	HLA-B15:01	VLHIILHYF	0.9288	0.6216	0.3199	391.1	1.4689	NA	1/787	1/4234
Fusion	Breast	TRAF3--MYO16	HLA-B15:01	LLRSEVAFSY	1	0.9266	0.6079	25.8	0.1162	NA	1/787	1/4234
Fusion	Breast	TRAF3--MYO16	HLA-B15:01	SEVAFSYVTF	0.9902	0.9033	1.0341	115.7	0.5917	NA	1/787	1/4234
Fusion	Breast	TRAF3--MYO16	HLA-B15:01	EVAFSYVTF	0.7911	0.8909	0.5181	496.7	1.689	NA	1/787	1/4234
Fusion	Breast	TRAF3--MYO16	HLA-B15:01	TLLRSEVAF	0.9805	0.9778	0.4548	222.1	0.9882	NA	1/787	1/4234
Fusion	Breast	TRAF3--MYO16	HLA-B15:01	VAFSYVTFF	0.9681	0.9485	0.5165	62.7	0.336	NA	1/787	1/4234
Fusion	Breast	TRAF3--MYO16	HLA-C03:04	VAFSYVTFF	0.9914	0.9904	0.3268	45.3	0.1947	NA	1/787	1/4234
Fusion	Breast	TRAF3--MYO16	HLA-C07:02	LRSEVAFSY	0.9654	0.9682	0.051	333	0.2206	NA	1/787	1/4234
Fusion	Breast	PCNT--MCOLN1	HLA-B07:02	RPPPPTPL	0.9998	0.7184	0.4563	51.9	0.1789	NA	1/787	1/4234
Fusion	Breast	PCNT--MCOLN1	HLA-B07:02	RAAGLHRTV	0.9873	0.507	1.1027	430.2	0.7632	NA	1/787	1/4234
Fusion	Breast	PCNT--MCOLN1	HLA-C07:02	IRPDCRWTV	0.7776	0.934	0.1435	320.8	0.2122	NA	1/787	1/4234
Fusion	Breast	C1orf123--ALG6	HLA-A30:01	IMKLRDTGK	0.9768	0.6656	1.0116	171.7	0.8276	NA	1/787	1/4234
Fusion	Breast	C1orf123--ALG6	HLA-A30:01	KVLVNRLCL	0.9363	0.9228	0.8228	144.7	0.7089	NA	1/787	1/4234
Fusion	Breast	PIGU--UQCC1	HLA-A30:01	GVRCLIHSI	0.9747	0.789	1.1589	86.5	0.4345	NA	1/787	1/4234
Fusion	Breast	ADGRB2--SPOCD1	HLA-C03:03	YGTADVHGL	0.9963	0.9785	1.3273	488.3	0.9964	NA	1/787	1/4234
Fusion	Breast	EFR3A--ASAP1	HLA-C03:03	VALDQDRTAL	0.9996	0.9937	0.2793	487.7	0.9955	NA	1/787	1/4234
Fusion	Breast	NSA2--HEXB	HLA-B15:01	FIRPMGSY	0.9997	0.9284	1.156	304.8	1.2507	NA	1/787	1/4234
Fusion	Breast	NSA2--HEXB	HLA-B15:01	RFIRPMGSY	0.9842	0.9448	0.2868	421.1	1.5313	NA	1/787	1/4234
Fusion	Breast	MED1--ABCC3	HLA-C12:03	QVMDSNLSV	0.9918	0.9414	0.9315	94.8	0.4285	NA	1/787	1/4234
Fusion	Breast	RBM10--YAP1	HLA-C03:03	ISIPAQQIL	0.9997	0.9852	0.1255	23	0.1001	NA	1/787	1/4234
Fusion	Breast	RBM10--YAP1	HLA-C03:04	ISIPAQQIL	0.9997	0.9852	0.1514	23	0.1001	NA	1/787	1/4234
Fusion	Breast	VPS41--ANKFN1	HLA-C12:03	KSSWIICRL	0.6472	0.9311	0.1435	309.6	1.1131	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	ALVCALAILR	0.9509	0.6997	1.202	154.9	1.0191	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	ATFLIQLERR	0.9766	0.6393	0.4048	70.6	0.5762	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	AYYPSIVANR	0.9904	0.6977	0.0096	27.1	0.2102	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	IAKIGLHDLR	0.8893	0.5287	1.8266	122.6	0.876	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	IVANRWLAVR	0.9704	0.8909	0.4033	34.3	0.275	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	KALVITNSAR	0.9856	0.529	0.4883	42.5	0.3515	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	KLYAWELAFK	0.9854	0.6053	0.3009	53.3	0.447	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	KSSLTLGLFR	0.9931	0.5339	0.2239	17.6	0.1211	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	LVCLARALLR	0.9782	0.7718	1.3729	50.9	0.4237	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	METNIVAVER	0.9459	0.568	1.516	72.5	0.5882	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	RLNTIMDYTR	0.9907	0.5318	0.3332	16.1	0.1067	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	RTPSGNLVNR	0.9845	0.7032	0.0383	73	0.5911	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	SSSYSGDISR	0.8769	0.5189	1.9612	232.2	1.3356	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	VIRAFEEQER	0.8692	0.6636	1.1249	197.1	1.1949	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	VSIGGILASR	0.9731	0.7749	0.1149	75.3	0.6054	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	VTTYLNWLVR	0.9616	0.5892	1.1532	65.1	0.541	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	YVASSRQLKR	0.948	0.5396	1.1679	230.5	1.3289	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-B40:01	QEYGAPSDLL	0.9818	0.6114	0.361	50.3	0.1422	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	LAFKDKVLAI	0.9963	0.9775	0.8833	270.6	0.6802	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	MVPVNAVMAM	0.9951	0.9946	0.879	397.7	0.8567	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	SAYLSAVGTF	0.9939	0.9866	1.1056	364.7	0.8097	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	RSDPPTLNGI	0.9953	0.7706	0.2287	400	0.265	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	AVSIGGILASR	0.9779	0.7644	0.3184	379.9	1.786	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	KAYYPSIVANR	0.998	0.6799	0.0214	56.1	0.4719	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	RQLKRLESVSR	0.9723	0.5272	0.8698	63.1	0.527	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	RYREDLDFVLR	0.9958	0.6701	0.0932	70.6	0.5764	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	SIVANRWLAVR	0.9642	0.7932	1.8016	164.3	1.0561	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	TVRNATFTWAR	0.9689	0.7987	0.5312	30.4	0.239	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	FAALFAVI	0.9998	0.9926	0.6117	401.4	0.8617	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	FSIPEGAL	0.9999	0.9936	0.4548	126	0.4197	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	TAFVSLAL	0.9999	0.9844	0.4113	270.3	0.6797	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	AALFAVISR	0.9513	0.5406	0.1963	84.4	0.6636	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	ALVITNSAR	0.8907	0.5297	1.12	301.8	1.5695	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	ATFLIQLER	0.985	0.5701	0.051	20.9	0.1503	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	ESSASFLSR	0.8945	0.5458	0.0734	231.5	1.3326	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	ETNIVAVER	0.8339	0.7078	0.051	391.1	1.8163	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	FRNYCLRYR	0.6844	0.5082	1.7785	451.5	1.9657	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	GSYQELLAR	0.9907	0.5085	0.3367	108.9	0.8052	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	GTQEHTKVR	0.8854	0.7195	0.6854	264.9	1.4512	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	HICFVSGMR	0.9595	0.5309	0.9735	62.1	0.5204	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	KTFGPYFLM	0.954	0.5815	0.8208	100.6	0.7598	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	LVCALAILR	0.9607	0.5996	0.5741	64.3	0.5355	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	LVLSCFSDR	0.9013	0.5841	0.7945	63.9	0.5324	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	LYAWELAFK	0.7812	0.6227	1.2561	269.5	1.4654	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	NLMSVDAQR	0.8576	0.6705	0.4698	155.2	1.0201	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	RNATFTWAR	0.9817	0.7696	0.2745	12	0.0666	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	SIGGILASR	0.9545	0.7778	0.0861	53.7	0.4505	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	SSLTLGLFR	0.9789	0.5565	0.2009	19.1	0.1346	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	SSYSGDISR	0.9725	0.5131	0.2319	43.3	0.3578	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	TFLIQLERR	0.9327	0.5374	1.0394	232.1	1.3352	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	TLLGVSVIR	0.9222	0.5832	0.4426	244.3	1.3825	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	TTYLNWLVR	0.9873	0.5795	0.1704	45.8	0.3791	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	VANRWLAVR	0.9517	0.8432	0.1055	26.1	0.2007	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	VCLARALLR	0.9451	0.5646	1.4148	402.3	1.8466	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	YFLMSFFFK	0.9045	0.5963	1.0524	50.4	0.4186	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-A31:01	YYPSIVANR	0.9608	0.6474	0.0717	185.4	1.1434	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-B40:01	AEGGENLSV	0.9883	0.5531	0.4769	325.4	0.5394	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-B40:01	QEYGAPSDL	0.994	0.6467	0.3769	35	0.1013	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-B40:01	SEQVVPVLV	0.9686	0.6495	0.0861	241.4	0.4529	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	ASFLSRITF	0.9912	0.9904	0.1514	173	0.5112	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	AVFGYSMAV	0.8452	0.9922	0.5706	53.1	0.2226	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	FAVISRHSL	0.9999	0.9936	0.0037	5.4	0.0198	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	FGYSMAVSI	0.9949	0.9808	0.5296	24.5	0.1076	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	FIHQSDLKV	0.6223	0.9808	0.6635	485.6	0.9922	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	FISFLSIFL	0.9849	0.985	1.3768	277	0.6893	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	FMCNHVSAL	0.9983	0.9726	0.2841	85.9	0.3282	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	FSGPQILKL	0.9998	0.9516	0.0441	168.3	0.5013	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	FSGSLRMNL	0.9984	0.9889	0.704	284	0.6994	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	FSIPEGALV	0.9936	0.992	0.2482	23.1	0.1008	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	FTWVCTPFL	0.9781	0.9941	0.9913	223.2	0.6033	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	FVSALPDKL	0.9978	0.9867	0.3941	130	0.4286	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	FVTACLQTL	0.998	0.9844	0.3941	37	0.1679	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	HSMSYLPQV	0.9409	0.9894	0.9549	134.4	0.4379	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	HVDLLHSIL	0.9979	0.9599	0.3822	389.3	0.845	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	IAAIIIPPL	0.9994	0.9881	0.3057	8.1	0.0297	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	IAHRLNTIM	0.9979	0.9803	0.5815	29.1	0.1283	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	ITFWWITGL	0.9932	0.9946	0.9814	224.9	0.6063	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	IVANRWLAV	0.762	0.9857	0.766	332.3	0.7674	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	KAIGLFISF	0.9963	0.9782	0.0154	65.6	0.2666	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	KAIHDLMMF	0.9627	0.9809	0.538	163.3	0.4926	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	KAYYPSIVA	0.9387	0.9945	0.2253	161.4	0.4893	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	KTFGPYFLM	0.9348	0.9921	0.713	204.1	0.5707	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	LAGVAVMVL	0.9989	0.9909	0.4646	79.9	0.3117	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	LAILRSKIM	0.9978	0.9879	0.6191	133.4	0.4357	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	LALFNILRF	0.9845	0.9787	1.0757	181.9	0.5292	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	LASNYWLSL	0.9996	0.991	0.2367	16.3	0.0671	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	LATPIAAII	0.9958	0.9848	0.1718	25	0.11	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	LGISQGIAV	0.9174	0.9865	1.1	191.3	0.5475	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	LLATPIAAI	0.8255	0.99	0.6117	273.7	0.6846	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	LLSALLAEM	0.9851	0.9896	1.3951	345.9	0.7847	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	LMVPVNAVM	0.9978	0.9957	0.4737	22.3	0.0969	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	LSVSYSLQV	0.9385	0.9828	1.6372	254.1	0.655	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	LVNRFSKEL	0.9954	0.987	0.9315	414.2	0.8788	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	LVTHSMSYL	0.9575	0.9797	1.9897	192.4	0.5496	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	MAVSIGGIL	0.9991	0.9784	0.2165	9.1	0.033	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	MIWSAPLQV	0.6189	0.9906	0.2526	311.9	0.7399	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	MMFSGPQIL	0.996	0.9737	0.3787	10.7	0.0379	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	MSGGKISEM	0.9995	0.9577	0.4646	226.2	0.6087	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	MSSEMETNI	0.9942	0.9909	1.6418	424.6	0.8923	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	MSVDAQRFM	0.9997	0.9402	0.4475	52.6	0.2207	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	MSYLPQVDV	0.8745	0.9806	0.9253	259.3	0.663	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	QTAFVSLAL	0.9952	0.9793	0.8771	115.5	0.3962	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	RIFLSHEEL	0.9559	0.9827	0.3152	238.2	0.6293	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	RSVIQACAL	0.9895	0.9895	0.637	157.2	0.4819	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	SALASNYWL	0.9957	0.9928	1.7839	300.6	0.7239	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	SAVGTFTWV	0.9702	0.992	1.0474	194.9	0.5542	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	SIVQASVSL	0.9983	0.9822	0.3956	58.3	0.2408	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	SMIPEVIKM	0.9901	0.9911	0.1435	247.1	0.6438	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	STVGEIVNL	0.9996	0.994	0.2446	486	0.9928	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	SVIQACALL	0.9965	0.9886	0.7881	318	0.7483	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	SVLAGVAVM	0.9983	0.9955	0.3639	28.6	0.1255	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	TAFVSLALF	0.9898	0.9872	0.9595	96.8	0.3557	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	TIIPQDPVL	0.9992	0.9937	0.251	138.6	0.4465	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	TIMDYTRVI	0.9911	0.9914	0.2428	130.9	0.4305	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	TQFEDCTVL	0.9742	0.993	1.1589	408.5	0.8713	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	VAIKGSVAY	0.9258	0.9795	0.1182	187.4	0.54	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	VALVCALAI	0.964	0.9894	0.721	154.8	0.4776	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	VLFSGSLRM	0.8188	0.9819	0.8065	133.5	0.436	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	VPVNAVMAM	0.9667	0.9948	0.5181	122.5	0.4119	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	VSLALFNIL	0.9958	0.9887	0.8677	239.2	0.6309	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	VTIDENNIL	0.9993	0.9878	0.4438	213.7	0.5873	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	WARSDPPTL	0.9982	0.9929	0.2684	19.4	0.0825	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	WLNLGPSVL	0.9668	0.9923	1.3729	120	0.4061	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	WSAPLQVIL	0.9997	0.9769	0.4675	25	0.11	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	YLFDDPLSA	0.5633	0.9914	0.1242	191.1	0.5472	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	YSHFNETLL	0.999	0.9968	0.2089	16.5	0.0679	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	YSLQVTTYL	0.9994	0.9732	0.3352	5.9	0.0221	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	YSMAKDAGL	0.9984	0.9773	0.6616	10.5	0.0372	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C03:04	YSNADIYLF	0.9971	0.9837	1.0266	113.1	0.3914	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	AVFGYSMAV	0.9988	0.9413	0.3495	195.1	0.1162	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	AVYRKALVI	0.9973	0.8682	0.0861	475.4	0.3194	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	FSGPQILKL	0.9997	0.7539	0.0356	201.5	0.1208	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	FSGSLRMNL	0.9987	0.8942	0.538	411.5	0.2737	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	FSIPEGALV	0.9996	0.9241	0.1821	68.1	0.025	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	FTWVCTPFL	0.9936	0.9439	0.5471	243	0.1502	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	HSMSYLPQV	0.9997	0.7965	0.2543	104.9	0.0489	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	HVDLLHSIL	0.9976	0.7496	0.3152	387.8	0.2554	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	ILDAQTAFV	0.9316	0.949	0.276	370.4	0.243	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	ISSIVQASV	0.9998	0.8435	0.5723	325.4	0.211	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	KSSLLSALL	0.9989	0.8681	0.433	119.3	0.0616	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	KTFGPYFLM	0.9934	0.9514	0.2227	69	0.0257	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	LASNYWLSL	0.9964	0.8772	0.2464	336.8	0.2195	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	LATPIAAII	0.9976	0.963	0.1734	194.9	0.1161	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	LSVSYSLQV	0.9994	0.6921	0.4698	167.4	0.0966	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	LSVYGALGI	0.9983	0.8635	0.8228	319.5	0.2064	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	MIWSAPLQV	0.9963	0.9564	0.0717	376.5	0.247	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	MSSEMETNI	0.9983	0.9104	0.5757	468.7	0.3148	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	MSVDAQRFM	0.998	0.8238	0.4167	301	0.1932	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	MSYLPQVDV	0.9976	0.7808	0.5181	203.5	0.1222	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	QTAFVSLAL	0.9955	0.8248	0.4548	369.7	0.2425	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	SSASFLSRI	0.9996	0.8298	0.262	192.5	0.1143	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	TVDSMIPEV	0.9953	0.9481	0.1182	471.8	0.3169	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	VLDEATAAV	0.9722	0.9761	0.193	300.4	0.1928	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	VTACLQTLV	0.9987	0.8629	0.6949	396.1	0.2619	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	VTDSAGKQL	0.9779	0.8779	0.0315	307.2	0.1973	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	WSAPLQVIL	0.999	0.8751	0.3386	133.4	0.0754	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	YSHFNETLL	0.999	0.9721	0.1977	116.3	0.0588	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	YSLQVTTYL	0.9989	0.8032	0.2841	41.1	0.0099	NA	1/787	1/4234
Fusion	Breast	MDM1--ABCC1	HLA-C15:05	YSMAKDAGL	0.9976	0.7314	0.5213	131.9	0.074	NA	1/787	1/4234
Fusion	Breast	RB1CC1--CHRNB3	HLA-A31:01	AGHHRFQLNR	0.8956	0.6643	1.7557	156.3	1.0247	NA	1/787	1/4234
Fusion	Breast	TMEM9B--MGP	HLA-A31:01	MQIPSYPLSR	0.975	0.6517	0.2287	98.4	0.7467	NA	1/787	1/4234
Fusion	Breast	TMEM9B--MGP	HLA-C03:04	FANATPWFM	0.9988	0.9933	0.1336	14.7	0.0593	NA	1/787	1/4234
Fusion	Breast	TMEM9B--MGP	HLA-C03:04	RGSENALSL	0.989	0.9777	0.8378	350.8	0.7908	NA	1/787	1/4234
Fusion	Breast	TMEM9B--MGP	HLA-C03:04	YPLSRDGEL	0.9968	0.957	1.0116	386.8	0.8415	NA	1/787	1/4234
Fusion	Breast	TMEM9B--MGP	HLA-C15:05	FANATPWFM	0.9945	0.9246	0.1369	58.1	0.017	NA	1/787	1/4234
Fusion	Breast	TMEM9B--MGP	HLA-C15:05	FMDTMLPII	0.9631	0.9185	0.458	321	0.2076	NA	1/787	1/4234
Fusion	Breast	NCOR1--DPM1	HLA-A24:02	SFLKGLLTLF	0.996	0.7609	0.3283	64.3	0.1433	NA	1/787	1/4234
Fusion	Breast	NCOR1--DPM1	HLA-B15:01	KLGGNEIVSF	0.9991	0.9549	0.4967	355.1	1.3855	NA	1/787	1/4234
Fusion	Breast	NCOR1--DPM1	HLA-B15:01	YTIGEVPISF	0.9998	0.9567	0.1855	91.3	0.4856	NA	1/787	1/4234
Fusion	Breast	NCOR1--DPM1	HLA-A24:02	RYKGNGGVYGW	0.9993	0.7203	0.1498	445	0.61	NA	1/787	1/4234
Fusion	Breast	NCOR1--DPM1	HLA-B15:01	KLGLGTAY	0.999	0.959	0.6314	388.8	1.4639	NA	1/787	1/4234
Fusion	Breast	NCOR1--DPM1	HLA-A24:02	SFLKGLLTL	0.969	0.794	0.0904	217.2	0.3846	NA	1/787	1/4234
Fusion	Breast	NCOR1--DPM1	HLA-B15:01	FLKGLLTLF	0.9985	0.9741	0.3427	46.6	0.2324	NA	1/787	1/4234
Fusion	Breast	NCOR1--DPM1	HLA-B15:01	GASDLTGSF	0.9908	0.9529	0.891	191.1	0.8825	NA	1/787	1/4234
Fusion	Breast	NCOR1--DPM1	HLA-B15:01	GMKHATGNY	0.9995	0.8522	0.2446	31.9	0.1477	NA	1/787	1/4234
Fusion	Breast	NCOR1--DPM1	HLA-B15:01	IVRARQLNY	0.9988	0.6138	0.5077	203.6	0.926	NA	1/787	1/4234
Fusion	Breast	NCOR1--DPM1	HLA-B15:01	RLASRGANF	0.9967	0.9513	0.3332	16	0.0456	NA	1/787	1/4234
Fusion	Breast	NCOR1--DPM1	HLA-C03:04	GANFLTQIL	0.9987	0.9833	0.5583	300.4	0.7236	NA	1/787	1/4234
Fusion	Breast	NCOR1--DPM1	HLA-C03:04	HATGNYIII	0.9903	0.9851	0.3822	68	0.2747	NA	1/787	1/4234
Fusion	Breast	NCOR1--DPM1	HLA-C03:04	KGYVFQMEM	0.9083	0.9893	0.5491	435.5	0.9085	NA	1/787	1/4234
Fusion	Breast	NCOR1--DPM1	HLA-C03:04	KIYGSDRIL	0.9587	0.9834	0.3152	423.7	0.891	NA	1/787	1/4234
Fusion	Breast	NCOR1--DPM1	HLA-C03:04	LASRGANFL	0.9966	0.9734	0.5815	61.6	0.2521	NA	1/787	1/4234
Fusion	Breast	NOL11--CARD11	HLA-A02:01	IMIDQLKHRL	0.983	0.7092	0.8607	79.6	0.9048	NA	1/787	1/4234
Fusion	Breast	ANKS1B--NDUFA12	HLA-B15:01	LAQASLASQY	0.9997	0.7889	1.3695	16.9	0.0549	NA	1/787	1/4234
Fusion	Breast	ANKS1B--NDUFA12	HLA-B15:01	MLAQASLASQY	1	0.8548	0.4718	32.8	0.1525	NA	1/787	1/4234
Fusion	Breast	ANKS1B--NDUFA12	HLA-B15:01	AQASLASQY	0.9998	0.838	0.0073	12.7	0.0319	NA	1/787	1/4234
Fusion	Breast	ANKS1B--NDUFA12	HLA-C03:04	FPMLAQASL	0.9983	0.9892	0.7594	27	0.1187	NA	1/787	1/4234
Fusion	Breast	ATP9A--LAMA5	HLA-B07:02	RLTARGPVL	0.761	0.5569	1.1501	289	0.6036	NA	1/787	1/4234
Fusion	Breast	PTK2--PPP2R5E	HLA-B07:02	RTFHPQSSL	0.9355	0.6073	0.5904	277.1	0.5875	NA	1/787	1/4234
Fusion	Breast	PTK2--PPP2R5E	HLA-C03:04	RTFHPQSSL	0.9941	0.9939	0.1072	38.6	0.1743	NA	1/787	1/4234
Fusion	Breast	CACNB1--CDC6	HLA-B15:01	RQVNHLLSL	0.9993	0.7756	0.1242	26.5	0.1211	NA	1/787	1/4234
Fusion	Breast	CACNB1--CDC6	HLA-C03:04	FVRQVNHLL	0.8766	0.9765	0.5399	212	0.5844	NA	1/787	1/4234
Fusion	Breast	CACNB1--CDC6	HLA-C03:04	RQVNHLLSL	0.9416	0.9806	0.2712	215.3	0.5901	NA	1/787	1/4234
Fusion	Breast	CACNB1--CDC6	HLA-C16:01	FVRQVNHLL	0.5799	0.9476	0.4113	85.4	0.2986	NA	1/787	1/4234
Fusion	Breast	CACNB1--CDC6	HLA-C16:01	RQVNHLLSL	0.9979	0.9642	0.2151	57.2	0.1914	NA	1/787	1/4234
Fusion	Breast	CACNB1--CDC6	HLA-C16:01	TSNSFVRQV	0.9685	0.9626	0.024	483.4	1.345	NA	1/787	1/4234
Fusion	Breast	CACNB1--LASP1	HLA-B15:01	RQVRYKEEF	0.9945	0.9419	0.1688	140.2	0.6974	NA	1/787	1/4234
Fusion	Breast	CACNB1--LASP1	HLA-C16:01	TSNSFVRQV	0.9685	0.9626	0.024	483.4	1.345	NA	1/787	1/4234
Fusion	Breast	EEA1--PAH	HLA-B15:01	RGQPIPRVEY	0.9988	0.8955	0.879	365.3	1.4099	NA	1/787	1/4234
Fusion	Breast	EEA1--PAH	HLA-C03:04	LALKRGQPI	0.9389	0.9784	0.9203	36.8	0.1673	NA	1/787	1/4234
Fusion	Breast	EEA1--PAH	HLA-C16:01	LALKRGQPI	0.591	0.9861	0.7356	50.5	0.1606	NA	1/787	1/4234
Fusion	Breast	IGKV2D-26--IGKC	HLA-B15:01	GLSSPVTKSF	0.9998	0.9385	0.6079	155.7	0.7559	NA	1/787	1/4234
Fusion	Breast	IGKV2D-26--IGKC	HLA-B44:03	TEQDSKDSTY	0.9986	0.9215	0.3925	494.2	0.4332	NA	1/787	1/4234
Fusion	Breast	IGKV2D-26--IGKC	HLA-C03:04	FIFPPSDEQL	0.9995	0.9906	0.1435	266.2	0.6735	NA	1/787	1/4234
Fusion	Breast	IGKV2D-26--IGKC	HLA-A02:01	SLLHSDGTVAA	0.9107	0.6125	0.2335	198.3	1.637	NA	1/787	1/4234
Fusion	Breast	IGKV2D-26--IGKC	HLA-B15:01	GTVAAPSVF	0.9783	0.9571	0.8065	67.7	0.3639	NA	1/787	1/4234
Fusion	Breast	IGKV2D-26--IGKC	HLA-B15:01	LSSPVTKSF	0.9992	0.9284	0.0214	103.8	0.5426	NA	1/787	1/4234
Fusion	Breast	IGKV2D-26--IGKC	HLA-B15:01	SVVCLLNNF	0.9773	0.8736	1.0524	142.6	0.707	NA	1/787	1/4234
Fusion	Breast	IGKV2D-26--IGKC	HLA-B15:01	VAAPSVFIF	0.9927	0.8941	0.1734	108.6	0.5632	NA	1/787	1/4234
Fusion	Breast	IGKV2D-26--IGKC	HLA-B44:03	REAKVQWKV	0.8811	0.7911	0.1149	468.6	0.4157	NA	1/787	1/4234
Fusion	Breast	IGKV2D-26--IGKC	HLA-C03:04	LSSPVTKSF	0.9991	0.9907	0.0214	174.1	0.5135	NA	1/787	1/4234
Fusion	Breast	IGKV2D-26--IGKC	HLA-C03:04	STYSLSSTL	0.9985	0.9872	0.4277	16	0.0655	NA	1/787	1/4234
Fusion	Breast	IGKV2D-26--IGKC	HLA-C03:04	VAAPSVFIF	0.9984	0.9876	0.0601	26.8	0.1178	NA	1/787	1/4234
Fusion	Breast	IGKV2D-26--IGKC	HLA-C03:04	YSLSSTLTL	0.9996	0.9892	0.184	3.3	0.0086	NA	1/787	1/4234
Fusion	Breast	IGKV2D-26--IGKC	HLA-C16:01	GTASVVCLL	0.8122	0.9852	1.0496	471.2	1.3228	NA	1/787	1/4234
Fusion	Breast	IGKV2D-26--IGKC	HLA-C16:01	GTVAAPSVF	0.6477	0.99	0.6572	424.8	1.2265	NA	1/787	1/4234
Fusion	Breast	IGKV2D-26--IGKC	HLA-C16:01	LSSPVTKSF	0.9507	0.9806	0.0073	51.3	0.1645	NA	1/787	1/4234
Fusion	Breast	IGKV2D-26--IGKC	HLA-C16:01	STYSLSSTL	0.9634	0.9747	0.388	15	0.0289	NA	1/787	1/4234
Fusion	Breast	IGKV2D-26--IGKC	HLA-C16:01	VAAPSVFIF	0.9223	0.9816	0.0344	27.4	0.0703	NA	1/787	1/4234
Fusion	Breast	IGKV2D-26--IGKC	HLA-C16:01	YSLSSTLTL	0.967	0.9841	0.2138	6.3	0.0087	NA	1/787	1/4234
Fusion	Breast	SCYL1--FRMD8	HLA-A02:01	FLEEIQAELM	0.9954	0.5552	0.8127	69	0.819	NA	1/787	1/4234
Fusion	Breast	SCYL1--FRMD8	HLA-B15:01	IQAELMSSL	0.9985	0.6556	0.4311	54.4	0.283	NA	1/787	1/4234
Fusion	Breast	SCYL1--FRMD8	HLA-C03:04	FLEEIQAEL	0.9956	0.9898	0.1302	98.5	0.3597	NA	1/787	1/4234
Fusion	Breast	SCYL1--FRMD8	HLA-C03:04	IQAELMSSL	0.9921	0.9802	0.7683	83.3	0.3211	NA	1/787	1/4234
Fusion	Breast	SCYL1--FRMD8	HLA-C16:01	FLEEIQAEL	0.9638	0.9593	0.2122	243	0.7883	NA	1/787	1/4234
Fusion	Breast	SCYL1--FRMD8	HLA-C16:01	IQAELMSSL	0.9946	0.9766	0.9103	119.8	0.4075	NA	1/787	1/4234
Fusion	Breast	AARS--COG4	HLA-A02:05	FANAGMNQKV	0.9384	0.6186	0.5999	141.2	0.8933	NA	1/787	1/4234
Fusion	Breast	CDV3--TMEM108	HLA-A02:05	MQIRFPADL	0.9545	0.7403	0.6273	119.5	0.7684	NA	1/787	1/4234
Fusion	Breast	UVRAG--KCTD14	HLA-C12:02	AQMSTVVEL	0.9882	0.9618	0.3367	493.2	0.6816	NA	1/787	1/4234
Fusion	Breast	UVRAG--KCTD14	HLA-C12:02	LLNKNIAQM	0.9685	0.9734	0.0794	248	0.3618	NA	1/787	1/4234
Fusion	Breast	PDHX--KDM6A	HLA-B15:01	TQWLRGIVF	0.9962	0.7976	0.0356	86.2	0.4611	NA	1/787	1/4234
Fusion	Breast	PDHX--KDM6A	HLA-B18:01	TQWLRGIVF	0.6256	0.74	0.2482	465.3	0.2858	NA	1/787	1/4234
Fusion	Breast	IGF2R--ACVR2A	HLA-C12:03	RTQDHPHLL	0.8111	0.99	0.0861	156.2	0.6687	NA	1/787	1/4234
Fusion	Breast	IGF2R--ACVR2A	HLA-C16:01	RTQDHPHLL	0.9925	0.9846	0.0523	47.3	0.1465	NA	1/787	1/4234
Fusion	Breast	BCAS4--SLC9A8	HLA-A29:02	FLACPFLVF	0.988	0.5459	0.7514	431.4	0.96	NA	1/787	1/4234
Fusion	Breast	BCAS4--SLC9A8	HLA-B08:01	FLTSLKFPL	0.9638	0.8882	1.9612	245.8	0.427	NA	1/787	1/4234
Fusion	Breast	BCAS4--SLC9A8	HLA-B44:03	LEKHVCLHF	0.9464	0.9172	0.68	399.6	0.3723	NA	1/787	1/4234
Fusion	Breast	BCAS4--SLC9A8	HLA-C16:01	FLACPFLVF	0.9167	0.9886	0.6837	283	0.8992	NA	1/787	1/4234
Fusion	Breast	BCAS4--SLC9A8	HLA-C16:01	LACPFLVFL	0.9641	0.9893	0.1025	289.8	0.9164	NA	1/787	1/4234
Fusion	Breast	BCAS4--SLC9A8	HLA-C16:01	LVFLTSLKF	0.7294	0.9896	1.0655	237.5	0.7726	NA	1/787	1/4234
Fusion	Breast	BTBD1--MESP1	HLA-C16:01	MTIEEFAAA	0.6543	0.9696	1.4692	427.1	1.2316	NA	1/787	1/4234
Fusion	Breast	GTF3C4--LMX1B	HLA-B08:01	HIWLRLFAA	0.9909	0.7635	0.8931	175.9	0.3108	NA	1/787	1/4234
Fusion	Breast	LRRC28--MEF2A	HLA-A29:02	FLPLGHFY	0.9996	0.6381	0.2213	136	0.5112	NA	1/787	1/4234
Fusion	Breast	LRRC28--MEF2A	HLA-A29:02	AFLPLGHFY	0.9996	0.5406	0.0052	6.6	0.012	NA	1/787	1/4234
Fusion	Breast	LRRC28--MEF2A	HLA-C16:01	KVWINEESL	0.9238	0.9889	0.2446	351.3	1.0546	NA	1/787	1/4234
Fusion	Breast	LRRC28--MEF2A	HLA-C16:01	LAFLPLGHF	0.7173	0.9933	0.4001	313.7	0.974	NA	1/787	1/4234
Fusion	Breast	PNPO--NPEPPS	HLA-C07:01	LRLMRYLML	0.9974	0.5483	0.6973	191.8	0.073	NA	1/787	1/4234
Fusion	Breast	PNPO--NPEPPS	HLA-C07:01	MRYLMLYHI	0.997	0.6393	0.3235	329.3	0.1187	NA	1/787	1/4234
Fusion	Breast	PNPO--NPEPPS	HLA-C07:01	TRSVWAIHL	0.9983	0.5922	0.1994	163.6	0.0634	NA	1/787	1/4234
Fusion	Breast	PNPO--NPEPPS	HLA-C16:01	MTTLGIRTL	0.9311	0.9718	0.1718	43.4	0.133	NA	1/787	1/4234
Fusion	Breast	PNPO--NPEPPS	HLA-C16:01	SVWAIHLRL	0.9156	0.974	0.9549	231	0.7537	NA	1/787	1/4234
Fusion	Breast	RAMP1--MLPH	HLA-B44:03	AEIFLPRVA	0.8853	0.9849	0.1014	238.1	0.247	NA	1/787	1/4234
Fusion	Breast	AP1M1--ZNF93	HLA-B44:03	IESVNLLLY	0.9884	0.9462	0.2526	129.4	0.1512	NA	1/787	1/4234
Fusion	Breast	AP1M1--ZNF93	HLA-C16:01	SVNLLLYVL	0.9345	0.9736	1.0418	254.5	0.8214	NA	1/787	1/4234
Fusion	Breast	AP1M1--ZNF93	HLA-C16:01	YVLILPKIF	0.6554	0.9518	0.4698	372.3	1.0955	NA	1/787	1/4234
Fusion	Breast	NDUFA7--SH2D3A	HLA-C16:01	STILGAPPF	0.589	0.969	0.5583	58.4	0.1963	NA	1/787	1/4234
Fusion	Breast	NDUFA7--SH2D3A	HLA-C16:01	VACSWSTIL	0.8165	0.9877	0.4986	167.7	0.5665	NA	1/787	1/4234
Fusion	Breast	TBC1D9--SMARCA5	HLA-A02:01	ALFKEIFDDA	0.9712	0.6236	0.5941	146.4	1.3582	NA	1/787	1/4234
Fusion	Breast	TBC1D9--SMARCA5	HLA-B44:03	EELYALFKEI	0.9776	0.9584	1.0091	243.1	0.251	NA	1/787	1/4234
Fusion	Breast	UCK2--DHX9	HLA-C03:04	LLLPAFQSL	0.991	0.9913	0.3254	98.4	0.3595	NA	1/787	1/4234
Fusion	Breast	UCK2--DHX9	HLA-C03:04	PAFQSLSSM	0.9718	0.9744	1.4566	422	0.8889	NA	1/787	1/4234
Fusion	Breast	UCK2--DHX9	HLA-C03:04	WAISIEILL	0.9995	0.9877	0.8492	51.7	0.2176	NA	1/787	1/4234
Fusion	Breast	NOL10--PDIA6	HLA-B44:02	LEGLGTPPW	0.9944	0.9098	0.6535	88.4	0.1132	NA	1/787	1/4234
Fusion	Breast	PTK7--PTCRA	HLA-C03:03	MAVHWMPSPM	0.9992	0.9914	0.8723	43.6	0.1898	NA	1/787	1/4234
Fusion	Breast	PTK7--PTCRA	HLA-C12:02	MAVHWMPSPM	0.9991	0.9818	0.7986	101.9	0.123	NA	1/787	1/4234
Fusion	Breast	PTK7--PTCRA	HLA-A69:01	ATLGLGLRV	0.8498	0.8238	0.8515	458.5	1.0688	NA	1/787	1/4234
Fusion	Breast	PTK7--PTCRA	HLA-A69:01	MAPGPTWPI	0.8947	0.8724	0.8024	11.4	0.0341	NA	1/787	1/4234
Fusion	Breast	PTK7--PTCRA	HLA-C03:03	AVHWMPSPM	0.9801	0.9936	0.8723	74.1	0.2945	NA	1/787	1/4234
Fusion	Breast	PTK7--PTCRA	HLA-C03:03	HWMPSPMAL	0.9406	0.985	0.2684	455	0.9421	NA	1/787	1/4234
Fusion	Breast	PTK7--PTCRA	HLA-C03:03	KVWAAHPFL	0.9661	0.9952	1.2828	344.5	0.783	NA	1/787	1/4234
Fusion	Breast	PTK7--PTCRA	HLA-C03:03	MAPGPTWPI	0.9887	0.9939	0.3753	51.3	0.2158	NA	1/787	1/4234
Fusion	Breast	PTK7--PTCRA	HLA-C03:03	SLMLHPLAL	0.9668	0.9921	0.0671	83.8	0.3225	NA	1/787	1/4234
Fusion	Breast	PTK7--PTCRA	HLA-C03:03	WSATLGLGL	0.9956	0.9955	1.7671	76.6	0.302	NA	1/787	1/4234
Fusion	Breast	PTK7--PTCRA	HLA-C12:02	AVHWMPSPM	0.9165	0.9832	0.5619	157.4	0.211	NA	1/787	1/4234
Fusion	Breast	PTK7--PTCRA	HLA-C12:02	MAPGPTWPI	0.8981	0.9896	0.5491	354.3	0.4979	NA	1/787	1/4234
Fusion	Breast	PTK7--PTCRA	HLA-C12:02	SLMLHPLAL	0.9396	0.9897	0.1242	346.3	0.489	NA	1/787	1/4234
Fusion	Breast	STAU2--OC90	HLA-A69:01	EAILWTLHI	0.9935	0.6377	0.8991	42.3	0.1373	NA	1/787	1/4234
Fusion	Breast	STAU2--OC90	HLA-C03:03	ISLSSVGCL	0.9979	0.9488	1.0978	388.1	0.8434	NA	1/787	1/4234
Fusion	Breast	MAP4K2--NETO2	HLA-A68:02	FAIATCASI	0.9875	0.6469	0.4475	25.4	0.2204	NA	1/787	1/4234
Fusion	Breast	MAP4K2--NETO2	HLA-A68:02	LSFAIATCA	0.88	0.831	1.5614	343	1.6047	NA	1/787	1/4234
Fusion	Breast	MAP4K2--NETO2	HLA-A68:02	QAALSFAIA	0.8265	0.65	1.3205	193.1	1.1067	NA	1/787	1/4234
Fusion	Breast	PPFIA1--LRP5	HLA-C07:01	RRFDELHLL	0.9995	0.7904	0.0465	52.7	0.016	NA	1/787	1/4234
Fusion	Breast	STAM2--THSD7B	HLA-A02:01	VVSEFVTGTV	0.972	0.6108	1.3988	189.8	1.5918	NA	1/787	1/4234
Fusion	Breast	STAM2--THSD7B	HLA-A31:01	ASSGVPMQVR	0.9511	0.9232	0.2319	299.7	1.5626	NA	1/787	1/4234
Fusion	Breast	STAM2--THSD7B	HLA-A31:01	TVVRATGLQR	0.9061	0.5433	0.251	346.1	1.6936	NA	1/787	1/4234
Fusion	Breast	STAM2--THSD7B	HLA-A02:01	FMLTGGQVTCL	0.9857	0.5406	0.8361	87.9	0.9729	NA	1/787	1/4234
Fusion	Breast	STAM2--THSD7B	HLA-A02:01	FLTGTTVCL	0.9771	0.7782	0.0979	20.4	0.2775	NA	1/787	1/4234
Fusion	Breast	STAM2--THSD7B	HLA-A31:01	QVTCLTVVR	0.9256	0.5765	0.4033	286.2	1.5177	NA	1/787	1/4234
Fusion	Breast	STAM2--THSD7B	HLA-A31:01	SSGVPMQVR	0.8528	0.8457	0.3124	381.5	1.7904	NA	1/787	1/4234
Fusion	Breast	STAM2--THSD7B	HLA-C03:04	FLTGTTVCL	0.875	0.9955	0.3235	96	0.3538	NA	1/787	1/4234
Fusion	Breast	STAM2--THSD7B	HLA-C03:04	FVTGTVTSF	0.9946	0.9942	0.1609	23.5	0.1027	NA	1/787	1/4234
Fusion	Breast	STAM2--THSD7B	HLA-C03:04	LAVKSSLGL	0.9994	0.9782	0.3787	11.5	0.0399	NA	1/787	1/4234
Fusion	Breast	STAM2--THSD7B	HLA-C03:04	LTLAVKSSL	0.9984	0.9868	0.9173	153.3	0.4748	NA	1/787	1/4234
Fusion	Breast	STAM2--THSD7B	HLA-C03:04	TTVCLFLTL	0.9964	0.9907	0.8515	353.7	0.7944	NA	1/787	1/4234
Fusion	Breast	PPM1H--C12orf56	HLA-B39:01	HRGALFNLL	0.9946	0.8289	0.2636	183.2	0.1953	NA	1/787	1/4234
Fusion	Breast	KMT2C--CNTNAP2	HLA-C07:01	IRHFPETLTL	0.9989	0.7989	0.259	314.6	0.1138	NA	1/787	1/4234
Fusion	Breast	KMT2C--CNTNAP2	HLA-B51:01	FPETLTLTV	0.9947	0.8641	0.3235	248.7	0.0367	NA	1/787	1/4234
Fusion	Breast	KMT2C--CNTNAP2	HLA-C16:02	YSIRLLPAM	0.9812	0.9318	0.1418	113.9	0.073	NA	1/787	1/4234
Fusion	Breast	NXPH3--KAT7	HLA-B44:03	FEICSLLAL	0.8116	0.7543	1.0394	305	0.3049	NA	1/787	1/4234
Fusion	Breast	FAF1--PTRH2	HLA-C07:02	SMPSKSLVM	0.639	0.9584	0.3898	474	0.3101	NA	1/787	1/4234
Fusion	Breast	FAF1--PTRH2	HLA-C12:03	SMPSKSLVM	0.998	0.9844	0.451	324.6	1.1517	NA	1/787	1/4234
Fusion	Breast	ERC1--AFDN	HLA-A02:01	RLLEPEAPGL	0.9916	0.8186	0.1761	59.9	0.7309	NA	1/787	1/4234
Fusion	Breast	ERC1--AFDN	HLA-A02:01	VLSPDSLFTA	0.9904	0.7333	0.1641	56.2	0.6931	NA	1/787	1/4234
Fusion	Breast	ERC1--AFDN	HLA-A02:05	VLSPDSLFTA	0.9958	0.5308	0.0932	98.9	0.638	NA	1/787	1/4234
Fusion	Breast	ERC1--AFDN	HLA-A02:01	KLTELENEL	0.9957	0.7013	0.0734	37.4	0.4897	NA	1/787	1/4234
Fusion	Breast	ERC1--AFDN	HLA-A02:01	SLFTAKFVA	0.962	0.5311	0.1947	72.3	0.8466	NA	1/787	1/4234
Fusion	Breast	ERC1--AFDN	HLA-A02:05	LSPDSLFTA	0.8598	0.5015	0.4001	199.2	1.2053	NA	1/787	1/4234
Fusion	Breast	PMM2--PPP2R3C	HLA-B07:02	RPTWTLSL	0.9991	0.7627	0.5657	14.5	0.0454	NA	1/787	1/4234
Fusion	Breast	PMM2--PPP2R3C	HLA-C07:02	IRPTWTLSL	0.9131	0.9405	0.0745	27.1	0.0098	NA	1/787	1/4234
Fusion	Breast	TAOK1--CCL2	HLA-A02:05	MQSMPQSPAV	0.9745	0.7017	1.7839	70.3	0.4528	NA	1/787	1/4234
Fusion	Breast	TAOK1--CCL2	HLA-A02:01	AMQSMPQSPAV	0.9371	0.535	1.9404	61.7	0.7501	NA	1/787	1/4234
Fusion	Breast	CAPRIN1--COMMD9	HLA-A66:01	ETVESLCHA	0.9976	0.5972	0.5795	237.2	0.0874	NA	1/787	1/4234
Fusion	Breast	CAPRIN1--COMMD9	HLA-C03:04	SAAWPSPPA	0.9781	0.9896	0.2913	252.1	0.6518	NA	1/787	1/4234
Fusion	Breast	CAPRIN1--COMMD9	HLA-C03:04	WTVETVESL	0.9991	0.9928	0.3736	42.6	0.1869	NA	1/787	1/4234
Fusion	Breast	CASC4--TGM5	HLA-C14:02	KVDDLPPVM	0.9984	0.9448	0.4382	325.5	0.9261	NA	1/787	1/4234
Fusion	Breast	CASC4--TGM5	HLA-C15:02	KVDDLPPVM	0.9891	0.8371	0.148	111.5	0.11	NA	1/787	1/4234
Fusion	Breast	DOPEY2--TRPM2	HLA-C16:01	SSLGKLNKL	0.836	0.9795	0.2573	126	0.4308	NA	1/787	1/4234
Fusion	Breast	HLCS--SLC37A1	HLA-A32:01	RLLDGRGLI	0.9445	0.9752	0.4183	491	0.7487	NA	1/787	1/4234
Fusion	Breast	RAB1B--ARFGEF2	HLA-A25:01	TTAKKLIAY	0.8156	0.5837	0.0558	304.1	0.0276	NA	1/787	1/4234
Fusion	Breast	PRELID3B--PTPRT	HLA-B18:01	SEHVFEWLF	0.9885	0.9889	0.0187	31.1	0.0217	NA	1/787	1/4234
Fusion	Breast	RAB10--ARHGAP39	HLA-B18:01	QECSLRRTM	0.9692	0.8223	0.8149	371.3	0.2351	NA	1/787	1/4234
Fusion	Breast	RBFOX2--NTSR1	HLA-B18:01	MQVNTFMSF	0.8144	0.899	1.0924	87.7	0.0622	NA	1/787	1/4234
Fusion	Breast	UQCC1--SAMHD1	HLA-C15:02	KSQAHYCLV	0.9982	0.7958	0.3685	125.4	0.1281	NA	1/787	1/4234
Fusion	Breast	CLTC--EPB41L3	HLA-C07:02	RFQEHLQKM	0.9222	0.9737	0.2183	193.3	0.1244	NA	1/787	1/4234
Fusion	Breast	TRIM37--TUBD1	HLA-C07:01	IRAGCCQLL	0.9763	0.5195	0.6875	478.5	0.1634	NA	1/787	1/4234
Fusion	Breast	TRIM37--TUBD1	HLA-C07:02	IRAGCCQLL	0.7941	0.8991	0.793	442.1	0.2892	NA	1/787	1/4234
Fusion	Breast	TRIM37--TUBD1	HLA-C07:02	RRRGLFRQF	0.8568	0.9042	0.4599	328.8	0.2178	NA	1/787	1/4234
Fusion	Breast	ZNF564--AKAP8L	HLA-A02:01	TQMQTLVPRV	0.9452	0.6313	0.6095	42.9	0.5528	NA	1/787	1/4234
Fusion	Breast	ZNF564--AKAP8L	HLA-A02:01	VIMDMELGTL	0.965	0.7313	0.704	203.7	1.6655	NA	1/787	1/4234
Fusion	Breast	ZNF564--AKAP8L	HLA-B08:01	MAMARITPPTM	0.9994	0.9437	1.3416	42.7	0.0715	NA	1/787	1/4234
Fusion	Breast	ZNF564--AKAP8L	HLA-A02:01	ALTQMQTLV	0.9774	0.6088	0.3514	120.6	1.1936	NA	1/787	1/4234
Fusion	Breast	ZNF564--AKAP8L	HLA-A02:01	AMAMAMARI	0.9487	0.5339	0.5829	132.2	1.2665	NA	1/787	1/4234
Fusion	Breast	ZNF564--AKAP8L	HLA-A02:01	AMARITPPT	0.955	0.6151	0.6715	203.9	1.667	NA	1/787	1/4234
Fusion	Breast	ZNF564--AKAP8L	HLA-A02:01	GMVWPLHTL	0.9305	0.6409	0.0121	44.5	0.5705	NA	1/787	1/4234
Fusion	Breast	ZNF564--AKAP8L	HLA-A02:01	QMQTLVPRV	0.9875	0.7021	0.0618	86	0.9574	NA	1/787	1/4234
Fusion	Breast	ZNF564--AKAP8L	HLA-A02:01	TLVPRVAPV	0.9888	0.534	0.167	12.8	0.1542	NA	1/787	1/4234
Fusion	Breast	ZNF564--AKAP8L	HLA-B08:01	MAMARITPP	0.981	0.7785	1.9828	118.2	0.21	NA	1/787	1/4234
Fusion	Breast	ZNF564--AKAP8L	HLA-B40:01	GQIEATRAM	0.9496	0.7584	1.004	454.3	0.658	NA	1/787	1/4234
Fusion	Breast	ZNF564--AKAP8L	HLA-C07:01	SRHTRIPAL	0.9985	0.6912	0.0686	32	0.0097	NA	1/787	1/4234
Fusion	Breast	ZNF564--AKAP8L	HLA-C07:02	RAMAMAMAM	0.9524	0.8755	0.6079	473.8	0.3098	NA	1/787	1/4234
Fusion	Breast	ZNF564--AKAP8L	HLA-C07:02	SRHTRIPAL	0.928	0.8998	0.0794	34.8	0.0133	NA	1/787	1/4234
Fusion	Breast	EMSY--ACER3	HLA-C12:03	STVAQGNTV	0.5381	0.9589	0.6594	169	0.7133	NA	1/787	1/4234
Fusion	Breast	PRPF6--GATA5	HLA-A30:01	KSSSRRAGL	0.9443	0.8464	1.0547	83.9	0.4212	NA	1/787	1/4234
Fusion	Breast	SULF2--GAB2	HLA-B57:03	ETLVYPAEW	0.6959	0.9935	0.1149	78.3	0.1671	NA	1/787	1/4234
Fusion	Breast	AP3D1--ZNF682	HLA-B35:01	LANDIMTLL	0.9172	0.9233	0.5312	249.4	0.5729	NA	1/787	1/4234
Fusion	Breast	AP3D1--ZNF682	HLA-C08:02	LANDIMTLL	0.9986	0.9717	0.2054	457.2	0.0526	NA	1/787	1/4234
Fusion	Breast	TENM4--INTS4	HLA-B35:01	LPHRLDRGM	0.9304	0.7485	0.678	227.8	0.5383	NA	1/787	1/4234
Fusion	Breast	TENM4--INTS4	HLA-B35:01	MPGGSEAAA	0.9062	0.9379	1.1056	189	0.4752	NA	1/787	1/4234
Fusion	Breast	LRP5--CASQ2	HLA-C07:01	FRLWPRSLNI	0.9972	0.8384	1.0394	159.4	0.062	NA	1/787	1/4234
Fusion	Breast	LRP5--CASQ2	HLA-C07:01	FRLWPRSL	0.9998	0.8576	0.5601	231.3	0.0857	NA	1/787	1/4234
Fusion	Breast	LRP5--CASQ2	HLA-A68:01	DGSFRLWPR	0.9944	0.7933	0.1285	104.5	0.9331	NA	1/787	1/4234
Fusion	Breast	C11orf49--RTN4	HLA-B15:01	LVCSVDVGIY	0.9912	0.7642	1.8393	351.8	1.3775	NA	1/787	1/4234
Fusion	Breast	C11orf49--RTN4	HLA-A02:01	GIYLCWCLV	0.9407	0.6169	1.2796	246.1	1.8799	NA	1/787	1/4234
Fusion	Breast	C11orf49--RTN4	HLA-C03:04	CSVDVGIYL	0.9986	0.9517	0.5723	190.2	0.5454	NA	1/787	1/4234
Fusion	Breast	FCHSD2--CPT1A	HLA-B15:01	REYAQDLLY	0.9401	0.8669	0.0601	438.1	1.5643	NA	1/787	1/4234
Fusion	Breast	FCHSD2--CPT1A	HLA-C03:03	YAQDLLYIL	0.9998	0.9748	0.1775	20.3	0.0866	NA	1/787	1/4234
Fusion	Breast	LRP5--NOX4	HLA-A02:01	ILMVLLEVHL	0.9824	0.6854	1.4654	38.1	0.497	NA	1/787	1/4234
Fusion	Breast	LRP5--NOX4	HLA-A02:01	TLYPPNDFEI	0.9901	0.6312	0.4277	89.1	0.982	NA	1/787	1/4234
Fusion	Breast	LRP5--NOX4	HLA-A02:01	IIPSCILMV	0.9504	0.7281	0.2499	108.3	1.1112	NA	1/787	1/4234
Fusion	Breast	LRP5--NOX4	HLA-A02:01	LMVLLEVHL	0.9682	0.6548	0.7749	81.9	0.9245	NA	1/787	1/4234
Fusion	Breast	LRP5--NOX4	HLA-C16:01	KTPKFCPSF	0.6071	0.9796	0.2942	360.8	1.0735	NA	1/787	1/4234
Fusion	Breast	MSH2--TMEM247	HLA-C16:01	LAYKFSGGL	0.8035	0.9891	0.7286	64.1	0.2204	NA	1/787	1/4234
Fusion	Breast	MYSM1--APOM	HLA-A02:01	GLIFPEVHL	0.9683	0.7828	0.4048	142.5	1.332	NA	1/787	1/4234
Fusion	Breast	ALG8--USP32	HLA-B15:01	RAKTTEGCF	0.9069	0.9614	0.9942	408.2	1.5055	NA	1/787	1/4234
Fusion	Breast	ALG8--USP32	HLA-C03:03	LILHGPALL	0.9898	0.9716	0.6973	141.6	0.4525	NA	1/787	1/4234
Fusion	Breast	ALG8--USP32	HLA-C03:03	TLILHGPAL	0.9227	0.956	0.3235	133.1	0.4352	NA	1/787	1/4234
Fusion	Breast	GOLGA4--ANO1	HLA-B57:01	MMGRETKVCW	0.9972	0.9926	0.6352	310.4	0.5211	NA	1/787	1/4234
Fusion	Breast	GOLGA4--ANO1	HLA-B57:01	MGRETKVCW	0.9978	0.9866	0.4397	164.5	0.3313	NA	1/787	1/4234
Fusion	Breast	HEATR6--PPME1	HLA-B15:01	GLFPCSLESVF	0.9999	0.907	0.645	287.9	1.1989	NA	1/787	1/4234
Fusion	Breast	HEATR6--PPME1	HLA-B57:01	ASKDKDKPW	0.9966	0.9335	0.585	496.2	0.7445	NA	1/787	1/4234
Fusion	Breast	NF1--CDK5RAP3	HLA-C06:02	RRYVDRVTEF	0.9915	0.9907	0.0717	150.8	0.0564	NA	1/787	1/4234
Fusion	Breast	NF1--CDK5RAP3	HLA-B57:01	KTRLTGRW	0.9993	0.9869	0.251	81.9	0.2024	NA	1/787	1/4234
Fusion	Breast	NF1--CDK5RAP3	HLA-B15:01	LMVILALSM	0.959	0.8771	1.1589	66.6	0.358	NA	1/787	1/4234
Fusion	Breast	NF1--CDK5RAP3	HLA-B15:01	MVILALSMF	0.9346	0.9179	1.0016	52.6	0.27	NA	1/787	1/4234
Fusion	Breast	NF1--CDK5RAP3	HLA-B57:01	FSTRSCGDW	0.9873	0.9795	0.7267	192	0.3708	NA	1/787	1/4234
Fusion	Breast	NF1--CDK5RAP3	HLA-B57:01	KTKELQKLI	0.9968	0.9037	0.3851	473.4	0.7178	NA	1/787	1/4234
Fusion	Breast	NF1--CDK5RAP3	HLA-C03:03	AALEPKLDL	0.9989	0.9805	0.1625	335.6	0.7716	NA	1/787	1/4234
Fusion	Breast	NF1--CDK5RAP3	HLA-C03:03	EALEEQAAL	0.9989	0.9868	0.7267	446.5	0.9276	NA	1/787	1/4234
Fusion	Breast	NF1--CDK5RAP3	HLA-C03:03	MVQKQQEAL	0.999	0.9912	0.68	430.1	0.8992	NA	1/787	1/4234
Fusion	Breast	NF1--CDK5RAP3	HLA-C03:03	YVDRVTEFL	0.9982	0.985	0.0201	326.5	0.7597	NA	1/787	1/4234
Fusion	Breast	ACO2--TEF	HLA-B27:05	KRGRKSWRR	0.9938	0.5324	0.9152	199.4	0.617	NA	1/787	1/4234
Fusion	Breast	CASP8--ALS2CR12	HLA-B27:05	GRAQISAYREL	1	0.6383	0.4347	493.2	1.2333	NA	1/787	1/4234
Fusion	Breast	POMK--NKAIN3	HLA-B27:05	KRVSALERQI	0.9998	0.8166	0.6929	179.7	0.5679	NA	1/787	1/4234
Fusion	Breast	POMK--NKAIN3	HLA-B27:05	KRVSALERQIF	1	0.8494	0.4232	327.8	0.9089	NA	1/787	1/4234
Fusion	Breast	POMK--NKAIN3	HLA-C03:04	GAVKRVSAL	0.9994	0.9881	0.0658	76.3	0.3012	NA	1/787	1/4234
Fusion	Breast	ROPN1B--ALG1L	HLA-C03:04	LACSALGVL	0.999	0.9937	0.5829	169	0.5028	NA	1/787	1/4234
Fusion	Breast	WNK1--PRMT8	HLA-C03:04	GVYPPSSVV	0.9735	0.9903	0.5619	164.7	0.4949	NA	1/787	1/4234
Fusion	Breast	ADK--LRRTM3	HLA-C07:02	IRPAHNKLL	0.8199	0.7929	0.3332	124.9	0.0672	NA	1/787	1/4234
Fusion	Breast	DIS3L2--UBE2E3	HLA-A32:01	KIQKELAEI	0.9911	0.9239	0.5815	496.7	0.7557	NA	1/787	1/4234
Fusion	Breast	RHOT1--FGFR1	HLA-A02:01	ILLVGERSV	0.9166	0.7332	0.8813	194.9	1.6186	NA	1/787	1/4234
Fusion	Breast	CP--SOX5	HLA-A02:01	KLISVDTKL	0.9842	0.6898	0.0052	53.7	0.668	NA	2/787	2/4234
Fusion	Breast	CP--SOX5	HLA-C05:01	SVDTKLMAI	0.9999	0.8371	0.1656	152.4	0.0776	NA	2/787	2/4234
Fusion	Breast	CP--SOX5	HLA-C07:02	LHLPHTTHL	0.702	0.9281	0.167	281	0.1847	NA	1/787	1/4234
Fusion	Breast	DDR2--GAB1	HLA-B44:02	EEEMVRVTQW	0.9991	0.5956	0.148	16.2	0.0096	NA	1/787	1/4234
Fusion	Breast	DDR2--GAB1	HLA-A02:01	GMEEEMVRV	0.9887	0.539	0.4902	71.8	0.8425	NA	1/787	1/4234
Fusion	Breast	DDR2--GAB1	HLA-B44:02	EEMVRVTQW	0.9997	0.5831	0.0052	8	0.0072	NA	1/787	1/4234
Fusion	Breast	SNX18--WDR93	HLA-C07:02	IHVQKGTTF	0.6078	0.8722	0.0618	464	0.3023	NA	1/787	1/4234
Fusion	Breast	ACER3--PC	HLA-B50:01	YEMQTNIA	0.9702	0.5584	0.4737	156.2	0.117	NA	1/787	1/4234
Fusion	Breast	ACER3--PC	HLA-B15:01	YEMQTNIAF	0.9606	0.729	0.3184	161.6	0.7766	NA	1/787	1/4234
Fusion	Breast	CACNB1--EMSY	HLA-A24:02	VYLHQQSKW	0.9934	0.8099	0.0073	321.2	0.5034	NA	1/787	1/4234
Fusion	Breast	CACNB1--EMSY	HLA-C03:03	FLHIKEVYL	0.7524	0.9923	0.0717	403.5	0.8645	NA	1/787	1/4234
Fusion	Breast	EXT1--RSF1	HLA-C03:03	TVLSTTEYL	0.9806	0.9911	0.786	302.3	0.7264	NA	1/787	1/4234
Fusion	Breast	GRB7--ACTN3	HLA-A24:02	HYLILPTFTAW	0.9991	0.6003	0.1872	175.3	0.3275	NA	1/787	1/4234
Fusion	Breast	CEP170--PRKACB	HLA-B18:01	HEAGTSVKEF	0.9579	0.9779	0.1625	437.8	0.2706	NA	1/787	1/4234
Fusion	Breast	FGFR1--CSMD1	HLA-B07:02	RPSPTLPEQV	0.981	0.5775	0.3925	303.2	0.6223	NA	1/787	1/4234
Fusion	Breast	FGFR1--CSMD1	HLA-B07:02	RPSPTLPEQVL	0.9995	0.5272	0.033	72.3	0.2306	NA	1/787	1/4234
Fusion	Breast	NSD3--CSMD1	HLA-C07:02	HRLKTPCMI	0.7782	0.9639	0.6616	486.4	0.3194	NA	1/787	1/4234
Fusion	Breast	TAF15--PTRH2	HLA-C07:02	RRARHTQIL	0.9146	0.9053	0.5019	73.7	0.0372	NA	1/787	1/4234
Fusion	Breast	TAF15--PTRH2	HLA-C07:02	VHSAWLLEL	0.6486	0.9796	0.1025	481.3	0.3156	NA	1/787	1/4234
Fusion	Breast	ATP1B1--ABCA13	HLA-A03:01	RVAPPVCLGSK	0.9998	0.5286	0.1915	32.6	0.1108	NA	1/787	1/4234
Fusion	Breast	ESR1--BNC2	HLA-B07:02	TPWAHPTST	0.9876	0.5434	0.3268	311.5	0.6329	NA	1/787	1/4234
Fusion	Breast	FCGR2A--SPTA1	HLA-C14:02	GYPYRPGCIF	0.923	0.983	0.7473	245.7	0.7206	NA	1/787	1/4234
Fusion	Breast	FRS2--CLLU1OS	HLA-B07:02	SPRLVLPMAL	0.9997	0.595	0.1072	5.4	0.0094	NA	1/787	1/4234
Fusion	Breast	FRS2--CLLU1OS	HLA-C07:02	HRNKFKILY	0.8763	0.8987	0.0356	156.4	0.0947	NA	1/787	1/4234
Fusion	Breast	FRS2--CLLU1OS	HLA-C14:02	SLVSPRLVL	0.6004	0.9721	0.8065	448.4	1.2332	NA	1/787	1/4234
Fusion	Breast	SSH2--UST	HLA-C14:02	SVLPFPSQV	0.5553	0.9887	1.6513	479.4	1.3061	NA	1/787	1/4234
Fusion	Breast	SYNJ2--MTUS2	HLA-A68:01	EEAGLAAAGR	0.9126	0.9871	0.2335	244.6	1.5394	NA	1/787	1/4234
Fusion	Breast	SYNJ2--MTUS2	HLA-B07:02	APGAGGAAAA	0.9944	0.667	0.6333	182.4	0.4445	NA	1/787	1/4234
Fusion	Breast	SYNJ2--MTUS2	HLA-B07:02	RAPGAGGAAA	0.9598	0.8471	1.276	76.4	0.2407	NA	1/787	1/4234
Fusion	Breast	SYNJ2--MTUS2	HLA-C14:02	RPYHVPFISL	0.9497	0.9206	1.12	200.9	0.6131	NA	1/787	1/4234
Fusion	Breast	SYNJ2--MTUS2	HLA-A68:01	EAGLAAAGR	0.9957	0.9832	0.1112	36.1	0.4237	NA	1/787	1/4234
Fusion	Breast	SYNJ2--MTUS2	HLA-A68:01	NGAPAGGAR	0.9425	0.9324	0.6818	290.4	1.7	NA	1/787	1/4234
Fusion	Breast	SYNJ2--MTUS2	HLA-B07:02	APGAGGAAA	0.9977	0.621	0.4675	38.8	0.135	NA	1/787	1/4234
Fusion	Breast	HLCS--IL10RB	HLA-A32:01	RLLRLAVVRL	0.9562	0.9725	1.3596	324.6	0.5307	NA	1/787	1/4234
Fusion	Breast	HLCS--IL10RB	HLA-C14:02	LLDGNGPLL	0.9919	0.9625	0.6635	436.2	1.2033	NA	1/787	1/4234
Fusion	Breast	ZNF552--UBL3	HLA-A32:01	ALMSSLDKF	0.9299	0.9111	0.1775	475.5	0.7293	NA	1/787	1/4234
Fusion	Breast	ZNF552--UBL3	HLA-B15:01	ALMSSLDKF	0.9808	0.7707	0.1547	51.8	0.2637	NA	1/787	1/4234
Fusion	Breast	PSME4--SLC22A16	HLA-A02:01	SLLEDEQLEI	0.9962	0.7168	0.5231	74.1	0.8617	NA	1/787	1/4234
Fusion	Breast	PSME4--SLC22A16	HLA-B57:01	HMCLPEHLLW	0.9998	0.9942	0.3413	124.3	0.2686	NA	1/787	1/4234
Fusion	Breast	PSME4--SLC22A16	HLA-B57:01	MCLPEHLLW	0.9996	0.9958	0.3529	28	0.0722	NA	1/787	1/4234
Fusion	Breast	PSME4--SLC22A16	HLA-C05:01	LLEDEQLEI	0.9998	0.9005	0.4845	193.4	0.0903	NA	1/787	1/4234
Fusion	Breast	PTPRF--GUCA2A	HLA-A02:01	SVLEGWKFLL	0.9651	0.7587	0.6333	116.3	1.1659	NA	1/787	1/4234
Fusion	Breast	PTPRF--GUCA2A	HLA-B57:01	KLSVLEGWKF	0.9916	0.9729	0.8991	136.3	0.287	NA	1/787	1/4234
Fusion	Breast	PTPRF--GUCA2A	HLA-B57:01	SAKLSVLEGW	0.9998	0.9961	0.3235	51.3	0.1392	NA	1/787	1/4234
Fusion	Breast	PTPRF--GUCA2A	HLA-B57:01	TSAKLSVLEGW	1	0.9953	0.3268	93.1	0.2212	NA	1/787	1/4234
Fusion	Breast	PTPRF--GUCA2A	HLA-B44:02	QELCTHPW	0.9994	0.5762	0.6929	35	0.0408	NA	1/787	1/4234
Fusion	Breast	PTPRF--GUCA2A	HLA-A02:01	VLEGWKFLL	0.966	0.8388	0.6117	62.2	0.7554	NA	1/787	1/4234
Fusion	Breast	PTPRF--GUCA2A	HLA-B57:01	LSVLEGWKF	0.9939	0.976	0.3736	314.5	0.5266	NA	1/787	1/4234
Fusion	Breast	PTPRK--C6orf203	HLA-B44:02	AQGQFSAAKW	0.9663	0.6728	0.1112	441.1	0.42	NA	1/787	1/4234
Fusion	Breast	PTPRK--C6orf203	HLA-B57:01	SAQGQFSAAKW	0.9999	0.973	0.1465	334.2	0.5523	NA	1/787	1/4234
Fusion	Breast	PTPRK--C6orf203	HLA-B57:01	QGQFSAAKW	0.9978	0.9912	0.4951	305.9	0.5149	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-A02:01	ALISTLWPAL	0.9872	0.5918	0.6154	7.2	0.0707	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-A02:01	YLLPGPLPAS	0.9809	0.7183	0.348	92.5	1.0073	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C03:03	VAFSTLPIPL	0.9993	0.9934	0.5454	54.6	0.2282	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	LATPAVSLEF	0.9808	0.991	0.5471	449	1.2789	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	VAFSTLPIPL	0.9738	0.9722	0.7399	136.9	0.469	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C03:03	FSTLPIPL	0.9999	0.9933	0.4426	303.7	0.7284	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C03:03	LATPAVSL	1	0.9822	0.3041	441.9	0.9196	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	FSTLPIPL	0.9943	0.9774	0.4865	454.2	1.29	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	RTALISTL	0.9985	0.9733	0.4529	388.3	1.1366	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	VAFSTLPI	0.9669	0.9764	1.9055	335.1	1.0214	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-A02:01	CSFDPSWPV	0.8642	0.8586	1.0314	63.2	0.7646	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-A02:01	FTCLATPAV	0.9676	0.6007	0.4951	175.4	1.5172	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-A02:01	YLLPGPLPA	0.996	0.7324	0.0583	4.6	0.0258	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-B15:01	GAAPSFVAF	0.998	0.9118	0.0822	40.9	0.199	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-B15:01	LQLMTLAKF	0.9951	0.8014	0.511	15.5	0.0409	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-B15:01	RVGGERSGY	0.9722	0.9055	0.68	476.7	1.6448	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-B44:03	QESSAGKVL	0.9788	0.9662	0.1963	485.8	0.4276	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C03:03	CSFDPSWPV	0.9725	0.9978	1.4399	237	0.6272	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C03:03	DSLPVPSAL	0.9989	0.9944	0.5264	288.7	0.7064	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C03:03	FVAFSTLPI	0.9729	0.9936	0.9867	7.5	0.028	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C03:03	GAAPSFVAF	0.9982	0.9874	0.0658	21.4	0.092	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C03:03	HSGCGSPPL	0.9811	0.9786	0.9663	291	0.7098	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C03:03	ISTLWPALM	0.9892	0.9848	1.12	252.8	0.653	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C03:03	LISTLWPAL	0.9918	0.9905	1.1	480.2	0.9836	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C03:03	LVILHVTLL	0.9959	0.9903	0.3461	236.1	0.6258	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C03:03	MTLAKFTCL	0.9984	0.9914	0.3941	139	0.4474	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C03:03	RAPRVTLSL	0.9917	0.9901	0.2727	87.7	0.3331	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C03:03	SGYLLPGPL	0.9873	0.9978	1.1173	271.6	0.6816	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C03:03	SSAGKVLVI	0.9983	0.9807	0.0299	196.9	0.5579	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C03:03	STLWPALMM	0.9501	0.9853	0.4916	396.4	0.8549	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C03:03	YLLPGPLPA	0.6021	0.989	0.5312	230.3	0.6159	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	ATPAVSLEF	0.7411	0.9855	0.193	254.5	0.8212	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	CSFDPSWPV	0.6756	0.9929	1.1501	156	0.5311	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	FTCLATPAV	0.6933	0.9889	0.8931	450.8	1.2827	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	FVAFSTLPI	0.8786	0.9791	1.2465	19.1	0.041	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	GAAPSFVAF	0.9521	0.989	0.0583	23	0.0543	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	ISTLWPALM	0.7947	0.9784	0.6137	120.3	0.4095	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	LISTLWPAL	0.9151	0.9827	1.4863	303.2	0.9493	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	LLRAPRVTL	0.7576	0.9886	0.348	165.5	0.5601	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	LVILHVTLL	0.9177	0.968	0.463	243.7	0.7901	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	MGSCWLQLM	0.7835	0.9781	1.1679	207.7	0.6839	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	MTLAKFTCL	0.9855	0.9817	0.3461	52	0.1679	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	RAPRVTLSL	0.9922	0.9865	0.2573	22.5	0.0526	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	SAGKVLVIL	0.9093	0.9686	0.3685	301.5	0.9452	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	SFDPSWPVL	0.9981	0.9828	0.1547	368	1.0872	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	SGLRGRTAL	0.7679	0.9767	0.7438	144.4	0.4934	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	SGYLLPGPL	0.6914	0.9939	0.9574	111.2	0.3815	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	SSAGKVLVI	0.9274	0.9522	0.0214	56.8	0.1894	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	STLWPALMM	0.7332	0.9815	0.2054	158.3	0.5382	NA	1/787	1/4234
Fusion	Breast	GYS1--EML2	HLA-C16:01	YLLPGPLPA	0.6095	0.9867	0.7226	345.4	1.0426	NA	1/787	1/4234
Fusion	Breast	NECTIN4--PFDN2	HLA-B15:01	RITHILHVSY	0.9998	0.694	0.2896	106.9	0.556	NA	1/787	1/4234
Fusion	Breast	NECTIN4--PFDN2	HLA-B15:01	ITHILHVSY	0.9995	0.6351	0.057	110.4	0.5704	NA	1/787	1/4234
Fusion	Breast	NECTIN4--PFDN2	HLA-C16:01	ITHILHVSY	0.534	0.9335	0.0226	400.6	1.1686	NA	1/787	1/4234
Fusion	Breast	NOS1AP--DARS2	HLA-A02:01	ALLSGPTHV	0.9955	0.6146	0.0948	14.2	0.1733	NA	1/787	1/4234
Fusion	Breast	NOS1AP--DARS2	HLA-B15:01	RIRNSVALL	0.9782	0.8942	1.1617	421.5	1.5322	NA	1/787	1/4234
Fusion	Breast	NOS1AP--DARS2	HLA-C16:01	RIRNSVALL	0.6831	0.9533	1.182	105.4	0.3648	NA	1/787	1/4234
Fusion	Breast	PUM1--PTPRK	HLA-C03:03	SAWGTSGSYM	0.9964	0.9934	0.6352	450.5	0.9346	NA	1/787	1/4234
Fusion	Breast	PUM1--PTPRK	HLA-B15:01	SAWGTSGSY	0.9952	0.9709	0.4902	58.5	0.3103	NA	1/787	1/4234
Fusion	Breast	TRIM4--TAF6	HLA-B44:03	KEMLKRFQGY	0.999	0.9059	0.5982	72.4	0.0862	NA	1/787	1/4234
Fusion	Breast	TRIM4--TAF6	HLA-B15:01	EMLKRFQGY	0.8795	0.8244	0.2653	499.9	1.6958	NA	1/787	1/4234
Fusion	Breast	KAZN--ST3GAL3	HLA-B57:03	GSPSQHPCSW	0.9563	0.9729	0.5471	281.4	0.515	NA	1/787	1/4234
Fusion	Breast	KLF16--RNF126	HLA-A74:01	RVWFYRGASGR	0.9959	0.7573	0.23	399.9	0.1842	NA	1/787	1/4234
Fusion	Breast	KLF16--RNF126	HLA-A74:01	KMRVWFYR	0.9941	0.5059	1.1249	104	0.035	NA	1/787	1/4234
Fusion	Breast	KLF16--RNF126	HLA-B14:02	EHRKWFCPL	0.9532	0.9367	0.9574	126.8	0.0097	NA	1/787	1/4234
Fusion	Breast	KLF16--RNF126	HLA-C07:01	LRTHTGLYL	0.9872	0.6422	0.259	62.6	0.0195	NA	1/787	1/4234
Fusion	Breast	MKNK2--ZFR2	HLA-B35:01	LPRPLHLGF	0.9709	0.7712	0.037	44.3	0.1712	NA	1/787	1/4234
Fusion	Breast	NOP58--KIAA2012	HLA-B35:01	DTAEALAAY	0.8985	0.8884	0.1566	21.1	0.0871	NA	1/787	1/4234
Fusion	Breast	SYNE1--RGS17	HLA-B35:01	HPSVVMVSL	0.9955	0.9049	0.051	27.7	0.1108	NA	1/787	1/4234
Fusion	Breast	SEC63--SCML4	HLA-B07:02	APGAFWARAA	0.9897	0.6148	0.2882	144.2	0.3804	NA	1/787	1/4234
Fusion	Breast	SEC63--SCML4	HLA-B07:02	GPTGSHSLPL	0.9983	0.5607	0.4808	24.9	0.0902	NA	1/787	1/4234
Fusion	Breast	SEC63--SCML4	HLA-B07:02	RLRPPAEAGL	0.9925	0.6708	0.6556	452.1	0.7839	NA	1/787	1/4234
Fusion	Breast	SEC63--SCML4	HLA-B07:02	APGAFWARAAI	0.9997	0.7071	0.8127	27.4	0.1006	NA	1/787	1/4234
Fusion	Breast	SEC63--SCML4	HLA-B07:02	HPSGRSHGPQL	0.9999	0.559	0.4347	22.3	0.0789	NA	1/787	1/4234
Fusion	Breast	SEC63--SCML4	HLA-B07:02	RPSLHRLRPPA	0.9996	0.8007	1.0314	78.1	0.2448	NA	1/787	1/4234
Fusion	Breast	SEC63--SCML4	HLA-B07:02	GPTGSHSL	0.9984	0.6473	0.6929	302.4	0.6213	NA	1/787	1/4234
Fusion	Breast	SEC63--SCML4	HLA-B07:02	GAAAGRPSL	0.9964	0.6845	0.1977	129.5	0.3556	NA	1/787	1/4234
Fusion	Breast	SEC63--SCML4	HLA-B07:02	RPPAEAGLL	0.9921	0.5454	0.3593	154.6	0.3965	NA	1/787	1/4234
Fusion	Breast	MPC1--PXT1	HLA-C07:01	MRIFNRMAEM	0.9996	0.6947	0.8169	139.3	0.0549	NA	1/787	1/4234
Fusion	Breast	MPC1--PXT1	HLA-C03:04	RIFNRMAEM	0.9685	0.9935	0.8585	97.3	0.3569	NA	1/787	1/4234
Fusion	Breast	MPC1--PXT1	HLA-C07:01	FRDYLMRIF	0.9951	0.5453	0.5019	130.3	0.0515	NA	1/787	1/4234
Fusion	Breast	KIF16B--PLCB1	HLA-A68:01	WVHALSEWRR	0.9852	0.6489	0.6333	28.4	0.3498	NA	1/787	1/4234
Fusion	Breast	KIF16B--PLCB1	HLA-B57:01	MNRRTNISGW	0.9925	0.9763	1.3526	325.8	0.5415	NA	1/787	1/4234
Fusion	Breast	KIF16B--PLCB1	HLA-B57:01	SGWVHALSEW	0.9995	0.9924	0.4456	117.2	0.257	NA	1/787	1/4234
Fusion	Breast	KIF16B--PLCB1	HLA-B57:01	ISGWVHALSEW	0.9999	0.9835	0.4134	44	0.1217	NA	1/787	1/4234
Fusion	Breast	KIF16B--PLCB1	HLA-A68:01	WVHALSEWR	0.99	0.6228	0.3866	18.7	0.2336	NA	1/787	1/4234
Fusion	Breast	C20orf196--CST4	HLA-C16:02	HIWPRIFYI	0.9833	0.968	0.0848	150.9	0.1166	NA	1/787	1/4234
Fusion	Breast	CACNG4--BPTF	HLA-A02:01	GLWRVCCIEV	0.9861	0.8347	1.0292	47.6	0.6027	NA	1/787	1/4234
Fusion	Breast	DCAF12--KIF24	HLA-B35:01	YPSTGSGTHPY	0.9987	0.8476	0.2122	13.9	0.054	NA	1/787	1/4234
Fusion	Breast	DCAF12--KIF24	HLA-B35:01	STGSGTHPY	0.7134	0.893	0.7376	247.4	0.5698	NA	1/787	1/4234
Fusion	Breast	DCAF12--KIF24	HLA-B35:01	YPSTGSGTH	0.9749	0.9038	0.7533	58.6	0.2197	NA	1/787	1/4234
Fusion	Breast	PCF11--KDM2A	HLA-B57:01	AQTAKGVVAW	0.9915	0.9813	0.1168	151	0.3094	NA	1/787	1/4234
Fusion	Breast	PCF11--KDM2A	HLA-B57:01	KGVVAWWMSW	0.9993	0.973	0.5982	26.1	0.0661	NA	1/787	1/4234
Fusion	Breast	PCF11--KDM2A	HLA-B57:01	QTAKGVVAWW	0.9997	0.984	0.2039	54.4	0.146	NA	1/787	1/4234
Fusion	Breast	PCF11--KDM2A	HLA-B57:01	GVVAWWMSW	0.9465	0.9763	0.637	107.9	0.2429	NA	1/787	1/4234
Fusion	Breast	PCF11--KDM2A	HLA-B57:01	QTAKGVVAW	0.9993	0.983	0.0299	49	0.1341	NA	1/787	1/4234
Fusion	Breast	PCF11--KDM2A	HLA-B57:01	TAKGVVAWW	0.9991	0.9869	0.0904	65.4	0.171	NA	1/787	1/4234
Fusion	Breast	PLXDC1--STAC2	HLA-C03:04	GAAPAIQAL	0.9998	0.9811	0.0539	13.6	0.0513	NA	1/787	1/4234
Fusion	Breast	FERMT1--RBBP8	HLA-A02:01	KLADNLKLFRL	0.9982	0.6003	0.1025	64.7	0.7794	NA	1/787	1/4234
Fusion	Breast	PLCB1--TRMT6	HLA-A02:01	ALNFQTMASV	0.9863	0.6023	0.9687	60.3	0.7356	NA	1/787	1/4234
Fusion	Breast	RFWD2--KIF14	HLA-B18:01	REVSYHIEM	0.976	0.8724	0.1807	171.2	0.1068	NA	1/787	1/4234
Fusion	Breast	TRPS1--PDE4DIP	HLA-A02:01	SLLRDLSATL	0.9027	0.7011	0.5264	63.3	0.7657	NA	1/787	1/4234
Fusion	Breast	TRPS1--PDE4DIP	HLA-A02:01	LLRDLSATL	0.8845	0.5331	0.4789	169.3	1.4853	NA	1/787	1/4234
Fusion	Breast	TRPS1--PDE4DIP	HLA-C07:01	LRDLSATLL	0.9754	0.6282	0.7356	358.9	0.1279	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGA8	HLA-B42:01	TPAPGPTTSL	0.9291	0.6915	0.0383	21.1	0.0992	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGA8	HLA-B42:01	APGPTTSL	0.9056	0.5935	0.1086	111.7	0.478	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGA8	HLA-B42:01	APKMAMTPA	0.9637	0.7894	0.1898	26	0.1245	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGA9	HLA-B42:01	TPAPGPTTSL	0.9291	0.6915	0.0383	21.1	0.0992	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGA9	HLA-B42:01	APGPTTSL	0.9056	0.5935	0.1086	111.7	0.478	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGA9	HLA-B42:01	APKMAMTPA	0.9637	0.7894	0.1898	26	0.1245	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGB5	HLA-B42:01	TPAPGPTTSL	0.9291	0.6915	0.0383	21.1	0.0992	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGB5	HLA-B42:01	APGPTTSL	0.9056	0.5935	0.1086	111.7	0.478	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGB5	HLA-B42:01	APKMAMTPA	0.9637	0.7894	0.1898	26	0.1245	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGB6	HLA-B42:01	TPAPGPTTSL	0.9291	0.6915	0.0383	21.1	0.0992	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGB6	HLA-B42:01	APGPTTSL	0.9056	0.5935	0.1086	111.7	0.478	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGB6	HLA-B42:01	APKMAMTPA	0.9637	0.7894	0.1898	26	0.1245	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGB7	HLA-B42:01	TPAPGPTTSL	0.9291	0.6915	0.0383	21.1	0.0992	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGB7	HLA-B42:01	APGPTTSL	0.9056	0.5935	0.1086	111.7	0.478	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGB7	HLA-B42:01	APKMAMTPA	0.9637	0.7894	0.1898	26	0.1245	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGC3	HLA-B42:01	TPAPGPTTSL	0.9291	0.6915	0.0383	21.1	0.0992	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGC3	HLA-B42:01	APGPTTSL	0.9056	0.5935	0.1086	111.7	0.478	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGC3	HLA-B42:01	APKMAMTPA	0.9637	0.7894	0.1898	26	0.1245	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGC4	HLA-B42:01	TPAPGPTTSL	0.9291	0.6915	0.0383	21.1	0.0992	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGC4	HLA-B42:01	APGPTTSL	0.9056	0.5935	0.1086	111.7	0.478	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGC4	HLA-B42:01	APKMAMTPA	0.9637	0.7894	0.1898	26	0.1245	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGC5	HLA-B42:01	TPAPGPTTSL	0.9291	0.6915	0.0383	21.1	0.0992	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGC5	HLA-B42:01	APGPTTSL	0.9056	0.5935	0.1086	111.7	0.478	NA	1/787	1/4234
Fusion	Breast	ANKHD1--PCDHGC5	HLA-B42:01	APKMAMTPA	0.9637	0.7894	0.1898	26	0.1245	NA	1/787	1/4234
Fusion	Breast	SRBD1--PLEKHA6	HLA-C12:03	FSHNERRNTF	0.9968	0.9658	0.6273	123.8	0.5449	NA	1/787	1/4234
Fusion	Breast	LARP4--RYR3	HLA-A33:01	HVTATPATPR	0.8761	0.7412	0.5419	432.6	0.824	NA	1/787	1/4234
Fusion	Breast	LARP4--RYR3	HLA-A33:01	VTATPATPR	0.922	0.6292	0.0618	440.7	0.835	NA	1/787	1/4234
Fusion	Breast	LARP4--RYR3	HLA-C03:04	TATPATPRF	0.9977	0.9823	0.2778	230.6	0.6163	NA	1/787	1/4234
Fusion	Breast	SPARC--COL3A1	HLA-B07:02	APQALPVPLV	0.8775	0.7083	0.433	180.4	0.4412	NA	1/787	1/4234
Fusion	Breast	SPARC--COL3A1	HLA-B07:02	APQALPVPL	0.9983	0.737	0.2573	9.2	0.0196	NA	1/787	1/4234
Fusion	Breast	CUTC--C19orf57	HLA-B27:06	FRTHSGGLF	0.9964	0.8064	0.6692	161.4	0.3614	NA	1/787	1/4234
Fusion	Breast	CUTC--C19orf57	HLA-C07:02	FRTHSGGLF	0.7791	0.9342	0.5741	117.1	0.0632	NA	1/787	1/4234
Fusion	Breast	FAM208B--NET1	HLA-B27:06	ARFAVLLTA	0.9998	0.7743	0.2367	184.5	0.3978	NA	1/787	1/4234
Fusion	Breast	MIB2--SMIM13	HLA-B27:06	RRATGRPDRL	0.9992	0.7064	0.5399	97.9	0.2364	NA	1/787	1/4234
Fusion	Breast	MIB2--SMIM13	HLA-B27:06	ARRATGRPDRL	0.9997	0.6902	0.7881	435.3	0.6822	NA	1/787	1/4234
Fusion	Breast	SHANK2--C7orf57	HLA-B27:06	FQAQKNLYL	0.9901	0.7268	0.4718	191.6	0.4096	NA	1/787	1/4234
Fusion	Breast	SHANK2--C7orf57	HLA-C07:02	FQAQKNLYL	0.8705	0.9439	0.2464	205.9	0.1341	NA	1/787	1/4234
Fusion	Breast	TGIF2--DLGAP4	HLA-B27:06	RQRQPQRLQL	0.9963	0.5953	0.1112	57	0.1455	NA	1/787	1/4234
Fusion	Breast	TGIF2--DLGAP4	HLA-B27:06	QRQPQRLQL	0.9999	0.5897	0.2712	85.6	0.207	NA	1/787	1/4234
Fusion	Breast	TGIF2--DLGAP4	HLA-C07:02	QRQPQRLQL	0.997	0.9565	0.2684	302.8	0.1993	NA	1/787	1/4234
Fusion	Breast	UCKL1--TXN	HLA-B27:06	FRKPWTLQVI	0.9992	0.6267	0.4196	125.7	0.294	NA	1/787	1/4234
Fusion	Breast	UCKL1--TXN	HLA-C07:02	FRKPWTLQVI	0.8391	0.9213	0.6333	385.6	0.2542	NA	1/787	1/4234
Fusion	Breast	UCKL1--TXN	HLA-B27:06	FRKPWTLQV	0.999	0.7285	0.0187	38.8	0.0965	NA	1/787	1/4234
Fusion	Breast	UCKL1--TXN	HLA-C07:02	FRKPWTLQV	0.7791	0.966	0.0131	38.5	0.0151	NA	1/787	1/4234
Fusion	Breast	ALCAM--EIF2A	HLA-A02:03	LISATVFRPV	0.9972	0.599	0.9687	20.4	0.5113	NA	1/787	1/4234
Fusion	Breast	ALCAM--EIF2A	HLA-B07:02	RPVRGSEGLYM	0.9994	0.7698	0.3624	205.2	0.4795	NA	1/787	1/4234
Fusion	Breast	ALCAM--EIF2A	HLA-B07:02	RPVRGSEGL	0.9992	0.7948	0.1625	31.4	0.112	NA	1/787	1/4234
Fusion	Breast	CDC5L--SPATS1	HLA-B15:02	VLSTPFSLPF	0.9898	0.9639	1.403	191.6	0.3223	NA	1/787	1/4234
Fusion	Breast	CDC5L--SPATS1	HLA-B15:02	LSTPFSLPF	0.9963	0.951	0.3318	60.6	0.0937	NA	1/787	1/4234
Fusion	Breast	LONP1--MAP2K7	HLA-A33:03	SHPAAWRALR	0.9588	0.7138	0.6117	88.9	0.344	NA	1/787	1/4234
Fusion	Breast	LONP1--MAP2K7	HLA-B07:02	HPAAWRALRL	0.9961	0.8928	0.2319	16.1	0.0539	NA	1/787	1/4234
Fusion	Breast	LONP1--MAP2K7	HLA-B07:02	TPRPPPGPAT	0.9986	0.7796	0.2165	92.4	0.2797	NA	1/787	1/4234
Fusion	Breast	LONP1--MAP2K7	HLA-A33:03	CSHPAAWRALR	0.9936	0.7008	0.8149	115.3	0.4283	NA	1/787	1/4234
Fusion	Breast	LONP1--MAP2K7	HLA-B07:02	HPAAWRAL	0.9997	0.8599	0.4409	10.1	0.0265	NA	1/787	1/4234
Fusion	Breast	LONP1--MAP2K7	HLA-A33:03	HPAAWRALR	0.9465	0.8136	0.1994	22.5	0.0803	NA	1/787	1/4234
Fusion	Breast	LONP1--MAP2K7	HLA-B07:02	APRSTPRPP	0.9964	0.5938	0.4675	281.1	0.5929	NA	1/787	1/4234
Fusion	Breast	LONP1--MAP2K7	HLA-B07:02	TPRPPPGPA	0.9997	0.7819	0.0835	14.4	0.0451	NA	1/787	1/4234
Fusion	Breast	MAP2K7--SH3GL1	HLA-B07:02	APAPSQRAAPL	1	0.6806	0.262	23.3	0.0831	NA	1/787	1/4234
Fusion	Breast	MAP2K7--SH3GL1	HLA-B07:02	APSQRAAPL	0.9998	0.6058	0.0778	4.6	0.0084	NA	1/787	1/4234
Fusion	Breast	PTGFRN--NOTCH2	HLA-A02:03	WLGQFCTEDV	0.9655	0.5561	1.388	72.1	1.5183	NA	1/787	1/4234
Fusion	Breast	RALGPS1--MVB12B	HLA-A02:03	KMVPSIPYLV	0.9981	0.5029	0.184	9.3	0.1818	NA	1/787	1/4234
Fusion	Breast	RALGPS1--MVB12B	HLA-A02:03	MVPSIPYLV	0.9679	0.6275	0.1947	50.8	1.1729	NA	1/787	1/4234
Fusion	Breast	MED13L--RNFT2	HLA-A24:02	CWSSCGSWPF	0.9855	0.5919	0.9913	138.5	0.2712	NA	1/787	1/4234
Fusion	Breast	MED13L--RNFT2	HLA-A24:02	FWRGTPSMCF	0.9924	0.649	0.6891	225.9	0.395	NA	1/787	1/4234
Fusion	Breast	MED13L--RNFT2	HLA-B15:02	APSSCTTASY	0.9222	0.7905	0.3427	233.3	0.388	NA	1/787	1/4234
Fusion	Breast	MED13L--RNFT2	HLA-B35:05	WPFWRGTPSM	0.9878	0.7793	0.3028	18.7	0.0425	NA	1/787	1/4234
Fusion	Breast	MED13L--RNFT2	HLA-B15:02	WSSCGSWPF	0.9817	0.9587	1.0678	75.4	0.1245	NA	1/787	1/4234
Fusion	Breast	ANXA2--RNF114	HLA-B58:01	KVCPICASMPW	0.9939	0.9778	0.5058	28.5	0.1875	NA	1/787	1/4234
Fusion	Breast	PRMT2--DPF1	HLA-B07:05	HPGGPQTQAL	0.996	0.5723	0.4718	44.8	0.1746	NA	1/787	1/4234
Fusion	Breast	PRMT2--DPF1	HLA-A33:03	ESQPRRGLLPR	0.986	0.5578	0.1855	496.7	1.2381	NA	1/787	1/4234
Fusion	Breast	PRMT2--DPF1	HLA-B07:05	LPRGHRALPQL	0.9999	0.7299	0.3987	21.8	0.0864	NA	1/787	1/4234
Fusion	Breast	PRMT2--DPF1	HLA-B07:05	APVRRAQPA	0.997	0.7009	0.7014	32.5	0.1301	NA	1/787	1/4234
Fusion	Breast	PRMT2--DPF1	HLA-B07:05	QPATALPRL	0.9958	0.5354	0.0671	83.1	0.3029	NA	1/787	1/4234
Fusion	Breast	PRMT2--DPF1	HLA-C07:02	RRAQPATAL	0.8081	0.9799	0.0412	113.5	0.0614	NA	1/787	1/4234
Fusion	Breast	PSMD12--PRKCA	HLA-A33:03	EHFAVLWSTR	0.9796	0.6677	0.6352	30	0.1075	NA	1/787	1/4234
Fusion	Breast	PSMD12--PRKCA	HLA-B58:01	RVVEHFAVLW	0.9998	0.9952	0.0412	12.6	0.0807	NA	1/787	1/4234
Fusion	Breast	PSMD12--PRKCA	HLA-C03:02	SAITVGHCSM	0.9976	0.9619	0.8361	261.8	0.9362	NA	1/787	1/4234
Fusion	Breast	PSMD12--PRKCA	HLA-B07:05	RVVEHFAVL	0.9545	0.5248	0.5583	128.9	0.4037	NA	1/787	1/4234
Fusion	Breast	PSMD12--PRKCA	HLA-B58:01	GAMNLLLFL	0.8921	0.8108	1.9828	336.8	1.1209	NA	1/787	1/4234
Fusion	Breast	PSMD12--PRKCA	HLA-B58:01	RGAMNLLLF	0.9863	0.7583	1.1855	149.1	0.6292	NA	1/787	1/4234
Fusion	Breast	PSMD12--PRKCA	HLA-B58:01	VVEHFAVLW	0.9958	0.9978	0.3398	170	0.6866	NA	1/787	1/4234
Fusion	Breast	PSMD12--PRKCA	HLA-C03:02	GAMNLLLFL	0.9857	0.9264	0.5924	168.5	0.6763	NA	1/787	1/4234
Fusion	Breast	PSMD12--PRKCA	HLA-C03:02	RGAMNLLLF	0.7892	0.9077	1.9682	317.2	1.0796	NA	1/787	1/4234
Fusion	Breast	PSMD12--PRKCA	HLA-C03:02	RVVEHFAVL	0.9957	0.9885	0.037	22.5	0.1003	NA	1/787	1/4234
Fusion	Breast	PSMD12--PRKCA	HLA-C03:02	VLWSTRGAM	0.6693	0.9618	1.9055	398	1.2515	NA	1/787	1/4234
Fusion	Breast	PSMD12--PRKCA	HLA-C07:02	RVVEHFAVL	0.9911	0.9811	0.0835	482	0.3161	NA	1/787	1/4234
Fusion	Breast	PSMD12--PRKCA	HLA-C07:02	VRIRDPTLM	0.8343	0.8958	0.3898	284.6	0.1872	NA	1/787	1/4234
Fusion	Breast	ACOT7--KLHL21	HLA-B57:01	HGGMTPLRW	0.9979	0.9827	0.2942	429.1	0.6672	NA	1/787	1/4234
Fusion	Breast	BCR--MRVI1	HLA-B57:01	DAACGAQASW	0.9758	0.9667	0.4232	376.8	0.6036	NA	1/787	1/4234
Fusion	Breast	BCR--MRVI1	HLA-B57:01	AACGAQASW	0.9984	0.9883	0.0583	36.6	0.0986	NA	1/787	1/4234
Fusion	Breast	CASZ1--SRM	HLA-B57:01	GTVRPMATCW	0.9998	0.8721	0.0255	26.3	0.0667	NA	1/787	1/4234
Fusion	Breast	CASZ1--SRM	HLA-B57:01	LGTVRPMATCW	0.9994	0.8324	0.5165	346.9	0.5681	NA	1/787	1/4234
Fusion	Breast	CASZ1--SRM	HLA-B57:01	TVRPMATCW	0.9978	0.8998	0.0383	71.8	0.184	NA	1/787	1/4234
Fusion	Breast	CKS1B--SHC1	HLA-B18:01	EEFEYRMAGF	0.9918	0.797	0.1514	14.5	0.0099	NA	1/787	1/4234
Fusion	Breast	CKS1B--SHC1	HLA-B18:01	EEFEYRMA	0.9951	0.9466	0.8422	474.5	0.2907	NA	1/787	1/4234
Fusion	Breast	CKS1B--SHC1	HLA-B18:01	FEYRMAGF	0.9969	0.8709	0.1775	265	0.1783	NA	1/787	1/4234
Fusion	Breast	CKS1B--SHC1	HLA-B18:01	EEFEYRMAG	0.8875	0.8913	0.8208	109.4	0.0765	NA	1/787	1/4234
Fusion	Breast	CORO1B--ERBB2	HLA-A02:03	GILHPRLPPA	0.9385	0.6345	1.6615	43.7	1.046	NA	1/787	1/4234
Fusion	Breast	CORO1B--ERBB2	HLA-B18:01	CEIARQLPFY	0.9929	0.796	0.7304	386.8	0.2425	NA	1/787	1/4234
Fusion	Breast	CORO1B--ERBB2	HLA-A02:03	ILHPRLPPA	0.9974	0.6455	0.0808	6.3	0.0923	NA	1/787	1/4234
Fusion	Breast	CORO1B--ERBB2	HLA-B18:01	CEIARQLPF	0.9978	0.7546	0.3837	49.5	0.0352	NA	1/787	1/4234
Fusion	Breast	EPS15L1--CLNS1A	HLA-A02:03	GLSDIILGKM	0.9945	0.6637	0.4033	50.5	1.1674	NA	1/787	1/4234
Fusion	Breast	EPS15L1--CLNS1A	HLA-B57:01	IILGKMGWRW	0.9996	0.991	0.3685	218.4	0.4044	NA	1/787	1/4234
Fusion	Breast	EPS15L1--CLNS1A	HLA-C06:02	WRWIPHQQLL	0.8714	0.9701	1.1472	220.3	0.0788	NA	1/787	1/4234
Fusion	Breast	EPS15L1--CLNS1A	HLA-B57:01	LSDIILGKMGW	1	0.9877	0.0979	110	0.2458	NA	1/787	1/4234
Fusion	Breast	EPS15L1--CLNS1A	HLA-B57:01	ILGKMGWRW	0.9733	0.9962	0.3542	446.2	0.6864	NA	1/787	1/4234
Fusion	Breast	USP39--DNAH6	HLA-B57:01	KTFQITKQVM	0.9988	0.9317	0.1566	181.8	0.3567	NA	1/787	1/4234
Fusion	Breast	USP39--DNAH6	HLA-B57:01	KTFQITKQVMW	0.9999	0.9967	0.0214	15.2	0.0252	NA	1/787	1/4234
Fusion	Breast	ZNF717--TMEM254	HLA-A02:03	FLQTFFFGIA	0.9961	0.7016	0.9203	40.2	0.9791	NA	1/787	1/4234
Fusion	Breast	ZNF717--TMEM254	HLA-A02:03	YLVDHHHTLL	0.9965	0.6809	0.037	12.9	0.3002	NA	1/787	1/4234
Fusion	Breast	ZNF717--TMEM254	HLA-B57:01	ITSGRAQLLW	0.9999	0.9163	0.1227	10.2	0.0122	NA	1/787	1/4234
Fusion	Breast	ZNF717--TMEM254	HLA-B57:01	TSGRAQLLWF	0.9982	0.9398	1.1589	349.1	0.5708	NA	1/787	1/4234
Fusion	Breast	ZNF717--TMEM254	HLA-B57:01	GITSGRAQLLW	0.9999	0.8631	0.5491	161.8	0.3271	NA	1/787	1/4234
Fusion	Breast	ZNF717--TMEM254	HLA-B57:01	ITSGRAQLLWF	0.9993	0.8868	0.5419	342.2	0.5623	NA	1/787	1/4234
Fusion	Breast	ZNF717--TMEM254	HLA-B57:01	KSLWVVFW	0.9994	0.9937	0.2913	73.1	0.1864	NA	1/787	1/4234
Fusion	Breast	ZNF717--TMEM254	HLA-A02:03	FLQTFFFGI	0.9934	0.7417	0.1566	15.9	0.3874	NA	1/787	1/4234
Fusion	Breast	ZNF717--TMEM254	HLA-A02:03	HVGESLYAI	0.8596	0.771	0.6535	106.3	1.9803	NA	1/787	1/4234
Fusion	Breast	ZNF717--TMEM254	HLA-A02:03	LLCNGYWLA	0.9864	0.7118	0.3577	90.8	1.7948	NA	1/787	1/4234
Fusion	Breast	ZNF717--TMEM254	HLA-A02:03	WLIHVGESL	0.981	0.6468	0.0808	26.8	0.6718	NA	1/787	1/4234
Fusion	Breast	ZNF717--TMEM254	HLA-A02:03	YLVDHHHTL	0.996	0.665	0.0005	3.5	0.0179	NA	1/787	1/4234
Fusion	Breast	ZNF717--TMEM254	HLA-B57:01	HTLLCNGYW	0.9851	0.9104	0.2745	15.8	0.0272	NA	1/787	1/4234
Fusion	Breast	ZNF717--TMEM254	HLA-B57:01	TSGRAQLLW	0.9996	0.9278	0.0835	19.3	0.0376	NA	1/787	1/4234
Fusion	Breast	NPEPPS--GNGT2	HLA-C03:03	QTGPTFNAL	0.9985	0.9898	0.2151	446.3	0.9273	NA	1/787	1/4234
Fusion	Breast	NPEPPS--GNGT2	HLA-C03:03	STLQTGPTF	0.8768	0.9846	0.704	104.9	0.3741	NA	1/787	1/4234
Fusion	Breast	NPEPPS--GNGT2	HLA-C03:04	QTGPTFNAL	0.9985	0.9898	0.2428	446.3	0.9273	NA	1/787	1/4234
Fusion	Breast	NPEPPS--GNGT2	HLA-C03:04	STLQTGPTF	0.8768	0.9846	0.8043	104.9	0.3741	NA	1/787	1/4234
Fusion	Breast	RANBP2--BMP5	HLA-C07:01	VRHKKGPSF	0.9776	0.7488	0.5165	231.6	0.0857	NA	1/787	1/4234
Fusion	Breast	NAGLU--FBXL20	HLA-B07:02	VPLAAPTSQM	0.9975	0.5719	0.4048	47.4	0.166	NA	1/787	1/4234
Fusion	Breast	NAGLU--FBXL20	HLA-B35:05	YAEGAISY	0.941	0.8096	1.5203	98.4	0.2677	NA	1/787	1/4234
Fusion	Breast	NAGLU--FBXL20	HLA-A30:01	ISYNPFVPL	0.8487	0.9448	1.5252	216.2	1.0223	NA	1/787	1/4234
Fusion	Breast	NAGLU--FBXL20	HLA-A30:01	KSQMKVSLL	0.9591	0.7327	0.5671	93.9	0.4708	NA	1/787	1/4234
Fusion	Breast	NAGLU--FBXL20	HLA-A30:01	SYNPFVPLA	0.5738	0.8927	0.8538	221.8	1.0453	NA	1/787	1/4234
Fusion	Breast	C5--RUVBL1	HLA-A11:01	RSLKSVPRRK	0.986	0.5119	0.9687	214.3	1.0494	NA	1/787	1/4234
Fusion	Breast	C5--RUVBL1	HLA-C03:04	FSFRSLKSV	0.9746	0.9693	0.4078	54.9	0.2292	NA	1/787	1/4234
Fusion	Breast	TMCO3--KATNAL2	HLA-B15:02	FALFNTRRVY	0.9926	0.914	0.5165	38.9	0.049	NA	1/787	1/4234
Fusion	Breast	TMCO3--KATNAL2	HLA-B15:02	ALFNTRRVY	0.9626	0.8913	0.0267	50	0.0742	NA	1/787	1/4234
Fusion	Breast	TMCO3--KATNAL2	HLA-B15:02	SSHFDFALF	0.9762	0.8675	0.3822	304.7	0.4917	NA	1/787	1/4234
Fusion	Breast	TMCO3--KATNAL2	HLA-C03:04	FALFNTRRV	0.9732	0.9925	0.2841	46	0.1965	NA	1/787	1/4234
Fusion	Breast	TMCO3--KATNAL2	HLA-C03:04	KSSHFDFAL	0.9939	0.987	0.3987	395.8	0.8541	NA	1/787	1/4234
Fusion	Breast	ERBB2--ABI3	HLA-A33:03	ETPQLWLPGR	0.8584	0.5298	0.2446	156.1	0.5439	NA	1/787	1/4234
Fusion	Breast	ERBB2--ABI3	HLA-A33:03	LSHCPAAAPR	0.9771	0.5312	0.9079	151.2	0.532	NA	1/787	1/4234
Fusion	Breast	ERBB2--ABI3	HLA-B07:05	RPREPTPSHA	0.9989	0.6717	0.4078	15.3	0.0582	NA	1/787	1/4234
Fusion	Breast	ERBB2--ABI3	HLA-B07:05	VPTPTGRRAA	0.9876	0.5609	1.2862	82.2	0.3004	NA	1/787	1/4234
Fusion	Breast	ERBB2--ABI3	HLA-A33:03	HLSHCPAAAPR	0.9712	0.5953	0.7151	417.4	1.0972	NA	1/787	1/4234
Fusion	Breast	ERBB2--ABI3	HLA-B07:05	APAGGARRQTL	1	0.6712	0.0875	30.2	0.1223	NA	1/787	1/4234
Fusion	Breast	ERBB2--ABI3	HLA-B07:05	RPREPTPSHAL	1	0.5887	0.0073	4.2	0.0086	NA	1/787	1/4234
Fusion	Breast	ERBB2--ABI3	HLA-B07:05	GPAGGRPAA	0.9993	0.7733	0.3318	23.2	0.0914	NA	1/787	1/4234
Fusion	Breast	ERBB2--ABI3	HLA-B07:05	RPAAGGSPC	0.9952	0.6815	0.7286	12.4	0.0432	NA	1/787	1/4234
Fusion	Breast	ERBB2--ABI3	HLA-C03:02	AASHAGGVV	0.74	0.9851	1.2301	421.4	1.2997	NA	1/787	1/4234
Fusion	Breast	ERBB2--ABI3	HLA-C03:02	AAVKNRHPV	0.8891	0.9625	1.2177	353.1	1.1583	NA	1/787	1/4234
Fusion	Breast	ERBB2--ABI3	HLA-C03:02	RAAPATGPA	0.9417	0.9779	1.0547	198.8	0.765	NA	1/787	1/4234
Fusion	Breast	ERBB2--ABI3	HLA-C03:02	TSSPTSPQL	0.9993	0.9509	0.4659	243.9	0.8876	NA	1/787	1/4234
Fusion	Breast	ERBB2--ABI3	HLA-C15:05	TSSPTSPQL	0.9996	0.8766	0.267	286.8	0.1834	NA	1/787	1/4234
Fusion	Breast	MED1--NGFR	HLA-C03:02	LVRQVMVSL	0.9468	0.9593	0.555	311.1	1.0645	NA	1/787	1/4234
Fusion	Breast	MED26--CERS1	HLA-A33:03	YTWTPGARTR	0.9835	0.6596	0.2102	78.8	0.3081	NA	1/787	1/4234
Fusion	Breast	MED26--CERS1	HLA-C03:02	LTSPSTSSSM	0.9966	0.9574	0.8859	475.8	1.4128	NA	1/787	1/4234
Fusion	Breast	MED26--CERS1	HLA-C15:05	RSCMPPVTAV	0.9993	0.9508	0.5924	142.1	0.0823	NA	1/787	1/4234
Fusion	Breast	MED26--CERS1	HLA-B07:05	SPAAAPTIGCM	0.9995	0.5062	0.5231	294.1	0.6913	NA	1/787	1/4234
Fusion	Breast	MED26--CERS1	HLA-B07:05	TPSGTTMWASL	0.9983	0.5116	0.8813	113.7	0.3744	NA	1/787	1/4234
Fusion	Breast	MED26--CERS1	HLA-A33:03	YTWTPGAR	0.9815	0.7373	1.0091	321.3	0.9196	NA	1/787	1/4234
Fusion	Breast	MED26--CERS1	HLA-A33:03	RYTWTPGAR	0.9562	0.6624	0.7106	429.6	1.1198	NA	1/787	1/4234
Fusion	Breast	MED26--CERS1	HLA-B40:06	REASMATPS	0.9873	0.6938	0.6854	394.7	0.2747	NA	1/787	1/4234
Fusion	Breast	MED26--CERS1	HLA-C03:02	AAAPTIGCM	0.9969	0.9643	0.1656	45.7	0.2232	NA	1/787	1/4234
Fusion	Breast	MED26--CERS1	HLA-C03:02	ASMATPSTL	0.999	0.9558	0.3736	18.2	0.0757	NA	1/787	1/4234
Fusion	Breast	MED26--CERS1	HLA-C03:02	CTISVTCSL	0.9876	0.9438	1.2177	86.3	0.4017	NA	1/787	1/4234
Fusion	Breast	MED26--CERS1	HLA-C03:02	MATPSTLRY	0.9834	0.9674	0.0201	11.6	0.0374	NA	1/787	1/4234
Fusion	Breast	MED26--CERS1	HLA-C03:02	RAWQCHGTL	0.9828	0.9864	0.9036	50.8	0.2452	NA	1/787	1/4234
Fusion	Breast	MED26--CERS1	HLA-C03:02	SLSSPSSTF	0.8309	0.9721	0.3624	191.7	0.7463	NA	1/787	1/4234
Fusion	Breast	MED26--CERS1	HLA-C15:05	ASMATPSTL	0.9995	0.9086	0.267	100	0.0456	NA	1/787	1/4234
Fusion	Breast	MED26--CERS1	HLA-C15:05	RSRSCMPPV	0.979	0.9537	1.1706	428.7	0.2864	NA	1/787	1/4234
Fusion	Breast	MLLT3--CISD3	HLA-B07:05	RPKRGPEPAA	0.9987	0.7078	0.1625	37.1	0.144	NA	1/787	1/4234
Fusion	Breast	MLLT3--CISD3	HLA-B07:05	GPEPAAGHL	0.9972	0.5512	1.0341	308.5	0.7116	NA	1/787	1/4234
Fusion	Breast	MLLT3--CISD3	HLA-B07:05	RPKRGPEPA	0.9994	0.5207	0.5165	69.7	0.2584	NA	1/787	1/4234
Fusion	Breast	PIP4K2B--MLLT6	HLA-B40:06	VESQTWRTA	0.9963	0.8357	0.1086	475.5	0.3398	NA	1/787	1/4234
Fusion	Breast	PSMB3--FAM117A	HLA-B07:05	RPMLGGPRKV	0.9922	0.669	0.0888	23.7	0.0945	NA	1/787	1/4234
Fusion	Breast	RAPGEFL1--IKZF3	HLA-B40:06	WELFRCVHEM	0.9706	0.5747	1.566	330.9	0.2259	NA	1/787	1/4234
Fusion	Breast	TCTA--ARIH2	HLA-A33:03	HITWSPDPGR	0.9241	0.7603	1.4064	480.3	1.209	NA	1/787	1/4234
Fusion	Breast	TCTA--ARIH2	HLA-A33:03	TAMTEGTWRTR	0.987	0.5224	0.1369	451.1	1.1585	NA	1/787	1/4234
Fusion	Breast	ACSS2--GSS	HLA-B58:01	TSNQSHRACRW	0.9979	0.8191	0.6854	222.2	0.8397	NA	1/787	1/4234
Fusion	Breast	ACSS2--GSS	HLA-B58:01	QSHRACRWW	0.9844	0.9812	0.5868	100.4	0.4775	NA	1/787	1/4234
Fusion	Breast	RBL1--CPNE1	HLA-C03:02	YSLEMAHCV	0.8734	0.9761	0.6137	209.8	0.7927	NA	1/787	1/4234
Fusion	Breast	RBL1--CPNE1	HLA-C15:05	YSLEMAHCV	0.9984	0.9048	0.2604	231.7	0.1426	NA	1/787	1/4234
Fusion	Breast	ADCY9--PAM16	HLA-C08:01	LASSDPPAL	0.9307	0.988	0.2499	402.2	0.1452	NA	1/787	1/4234
Fusion	Breast	C19orf47--BLVRB	HLA-B15:02	DSQVTSTKSY	0.8926	0.8405	1.5887	498.5	0.7215	NA	1/787	1/4234
Fusion	Breast	C19orf47--BLVRB	HLA-B15:02	SQVTSTKSY	0.896	0.9097	0.0142	54.3	0.0838	NA	1/787	1/4234
Fusion	Breast	PHF3--NUS1	HLA-B15:02	FQMPCSTGIF	0.9916	0.9558	0.3717	31.8	0.0333	NA	1/787	1/4234
Fusion	Breast	PHF3--NUS1	HLA-B15:02	QMPCSTGIF	0.9242	0.957	0.6758	296.7	0.4811	NA	1/787	1/4234
Fusion	Breast	PHF3--NUS1	HLA-C08:01	FQMPCSTGI	0.8887	0.9921	1.2828	263.1	0.0898	NA	1/787	1/4234
Fusion	Breast	TET3--C2orf78	HLA-B15:02	FPTCDCVEY	0.9889	0.9449	0.3753	445.8	0.6563	NA	1/787	1/4234
Fusion	Breast	TMX2--C11orf80	HLA-C08:01	WVDEKPRTL	0.9698	0.9787	0.0201	394.1	0.1422	NA	1/787	1/4234
Fusion	Breast	UBTD2--SH3PXD2B	HLA-B56:01	LPHGPHPAA	0.9957	0.8816	0.0025	25.8	0.0156	NA	1/787	1/4234
Fusion	Breast	ATP6V1H--CHD7	HLA-B15:02	YLHIPRRSPF	0.9778	0.8075	1.2529	138.3	0.2367	NA	1/787	1/4234
Fusion	Breast	LRRC1--FRY	HLA-C03:02	YQLNNGHEI	0.621	0.8536	1.4943	70.9	0.3439	NA	1/787	1/4234
Fusion	Breast	ATP8B4--DPH6	HLA-C14:02	YMFVEKVESM	0.9655	0.9519	0.5723	194.7	0.5971	NA	1/787	1/4234
Fusion	Breast	ATP8B4--DPH6	HLA-A31:01	LWIALYLRR	0.9306	0.595	1.0678	120.2	0.8642	NA	1/787	1/4234
Fusion	Breast	ATP8B4--DPH6	HLA-C07:02	MFVEKVESM	0.9345	0.9499	0.0201	105.9	0.0575	NA	1/787	1/4234
Fusion	Breast	ATP8B4--DPH6	HLA-C14:02	MFVEKVESM	0.5262	0.9693	0.0096	17.9	0.0479	NA	1/787	1/4234
Fusion	Breast	MEIS2--MYO5A	HLA-C14:02	WLFQHLTIL	0.6204	0.9577	1.8773	360.2	1.0091	NA	1/787	1/4234
Fusion	Breast	SYNE1--CACNA1C	HLA-A02:06	SQMAEHQRLV	0.9288	0.6035	1.3915	127.8	1.3046	NA	1/787	1/4234
Fusion	Breast	SYNE1--CACNA1C	HLA-A02:06	SQMAEHQRL	0.9543	0.6285	0.2868	207.4	1.8581	NA	1/787	1/4234
Fusion	Breast	SYNE1--CACNA1C	HLA-B15:02	HQRLVSMNM	0.9377	0.877	0.2543	164.2	0.2773	NA	1/787	1/4234
Fusion	Breast	APPBP2--DNAH17	HLA-B13:01	IQFDVYYKEL	0.8067	0.9154	0.6594	230.3	0.1433	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	AIIGGMFTVA	0.9802	0.5322	0.2856	23.9	0.305	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	CAIIGGMFTV	0.9605	0.7448	0.8399	12.1	0.1453	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	FLSELQYYLT	0.9907	0.662	1.4776	15.1	0.1861	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	FQQSHVHGCV	0.7914	0.6596	1.5485	64.5	0.7792	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	KMIARSLACV	0.9886	0.7711	0.766	35.6	0.4544	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	LLGDQGLPGV	0.9934	0.7636	0.4845	60.6	0.734	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	MMFQYFVKVV	0.9714	0.7435	0.7456	55.6	0.679	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	RSFTHFLTGV	0.971	0.695	0.1718	33.2	0.423	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	SMMFQYFVKV	0.9829	0.6866	0.5829	22.5	0.2873	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	VLYELSPMMV	0.9973	0.8539	0.0919	59.7	0.7238	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	YLTTEVHPEL	0.9814	0.7193	0.5686	58.9	0.7132	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-B15:02	EQKNEGCQVY	0.9475	0.6804	0.557	476.6	0.6943	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-B15:02	MTHYIQHLSF	0.9979	0.82	0.8271	180.5	0.3023	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-B15:02	VLFPHMPCAY	0.9926	0.9295	0.0356	53.6	0.0828	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-B15:02	YFVKVVPTVY	0.8973	0.7678	0.2009	449.3	0.6607	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-B35:05	VLFPHMPCAY	0.7674	0.6951	0.5512	497.9	0.9431	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	GLLGDQGLPGV	0.9982	0.8213	0.4347	46.8	0.5847	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	VLFPHMPCAYL	0.9849	0.8053	1.0418	94.6	1.0544	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-B35:05	LPGVFVLY	0.9888	0.7073	0.4865	245	0.5379	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	AIIGGMFTV	0.9933	0.5349	0.0084	2.6	0.0078	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	CQVYGFLEV	0.9822	0.7913	0.4311	10.5	0.1171	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	FLSELQYYL	0.9988	0.7011	0.0002	1.9	0.0051	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	FLTGVCAII	0.984	0.5006	0.3445	78.3	0.9048	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	FVLYELSPM	0.9436	0.6082	0.8127	12.6	0.1525	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	GIIVVNTEV	0.9474	0.8122	0.4769	140.3	1.3863	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	KVAGNFHFA	0.9704	0.5419	0.037	22.5	0.2872	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	LQSFGLDNI	0.5918	0.5426	0.8931	90.6	1.0206	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	LQYYLTTEV	0.973	0.5482	0.241	17.9	0.2266	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	LTTEVHPEL	0.9644	0.7363	0.0142	179.7	1.6822	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	MIARSLACV	0.9803	0.8467	0.3398	13.9	0.168	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	MLLLFLSEL	0.9689	0.5763	0.3514	32.3	0.4099	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	MMFQYFVKV	0.9942	0.6841	0.0166	5.5	0.0417	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	QQLDVEHNL	0.9183	0.5893	0.1401	86.1	0.981	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	VLFPHMPCA	0.9718	0.808	0.0109	28	0.3593	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	VLYELSPMM	0.9891	0.7956	0.2213	46.4	0.5802	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	VVPTVYMKV	0.912	0.5164	0.0875	118.1	1.2368	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	YFVKVVPTV	0.8424	0.5295	0.1609	195.5	1.7868	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-A02:06	YLSIDAMDV	0.9853	0.5365	0.4295	114	1.2063	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-B15:02	CAYLSIDAM	0.9846	0.7013	0.4986	270.3	0.4441	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-B15:02	FVKVVPTVY	0.9969	0.8106	0.0267	105.5	0.1848	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-B15:02	FVLYELSPM	0.9645	0.9605	0.9993	55.6	0.0858	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-B15:02	LLFLSELQY	0.9845	0.8833	0.4167	134.5	0.2311	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-B15:02	QASMMFQYF	0.9899	0.9418	0.5419	230.8	0.3843	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-B15:02	VLYELSPMM	0.937	0.9521	0.6875	396.9	0.5934	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-B35:05	QASMMFQYF	0.9763	0.6017	1.1501	86.3	0.2392	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-B35:05	WAFKNPDTI	0.9281	0.8181	1.8393	264.8	0.568	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-C08:01	FLSELQYYL	0.8953	0.955	0.0131	49.9	0.0134	NA	1/787	1/4234
Fusion	Breast	DYNLRB1--ERGIC3	HLA-C08:01	WAFKNPDTI	0.7488	0.9881	0.4825	141.8	0.0459	NA	1/787	1/4234
Fusion	Breast	LEMD3--XPOT	HLA-B15:02	YLKGPECVQY	0.9924	0.9306	0.0643	198.2	0.3335	NA	1/787	1/4234
Fusion	Breast	LRBA--ESF1	HLA-A02:06	LVMLLCSQV	0.9498	0.6859	0.4018	42.2	0.535	NA	1/787	1/4234
Fusion	Breast	NF1--CACNA1G	HLA-C03:03	VARSPAPAAL	0.9979	0.9865	0.267	98.9	0.3606	NA	1/787	1/4234
Fusion	Breast	NF1--CACNA1G	HLA-C03:03	YVARSPAPAAL	0.9995	0.9735	0.7749	255.5	0.6572	NA	1/787	1/4234
Fusion	Breast	NF1--CACNA1G	HLA-B39:01	ARSPAPAAL	0.9986	0.9391	0.1182	85.1	0.0869	NA	1/787	1/4234
Fusion	Breast	NF1--CACNA1G	HLA-C07:02	ARSPAPAAL	0.9084	0.9694	0.057	195.8	0.1263	NA	1/787	1/4234
Fusion	Breast	ERO1A--GPR137C	HLA-B15:25	AQRCFCQGMSL	0.9789	0.8596	1.2493	344.3	1.5321	NA	1/787	1/4234
Fusion	Breast	ERO1A--GPR137C	HLA-B15:25	AQRCFCQGM	0.8523	0.9298	0.6392	78.6	0.5273	NA	1/787	1/4234
Fusion	Breast	ERO1A--GPR137C	HLA-C12:03	RCFCQGMSL	0.8056	0.9874	1.9404	339.8	1.1889	NA	1/787	1/4234
Fusion	Breast	ERO1A--TXNDC16	HLA-B15:25	AQRCFCQAHL	0.8456	0.9446	1.2828	459	1.8364	NA	1/787	1/4234
Fusion	Breast	ERO1A--TXNDC16	HLA-B15:25	AQRCFCQAH	0.6849	0.9261	0.8271	282	1.3479	NA	1/787	1/4234
Fusion	Breast	PKN1--LDLR	HLA-B15:25	TQDLLSGRLY	0.9786	0.6567	0.2352	99.4	0.6338	NA	1/787	1/4234
Fusion	Breast	BSDC1--YARS	HLA-A02:03	SVVKEKLAEV	0.9801	0.6345	0.1596	14.3	0.3431	NA	1/787	1/4234
Fusion	Breast	BSDC1--YARS	HLA-A02:03	KLAEVLGEEKL	0.9995	0.866	0.1149	51.3	1.1817	NA	1/787	1/4234
Fusion	Breast	BSDC1--YARS	HLA-A02:03	VVKEKLAEV	0.9916	0.5688	0.0187	13.1	0.3049	NA	1/787	1/4234
Fusion	Breast	MLLT6--ACE	HLA-A02:03	KVLCQLHHPV	0.9883	0.8066	1.7731	75.3	1.5645	NA	1/787	1/4234
Fusion	Breast	MLLT6--ACE	HLA-A02:03	CQLHHPVPV	0.9581	0.814	0.5982	60.8	1.3327	NA	1/787	1/4234
Fusion	Breast	MLLT6--ACE	HLA-A02:03	VLCQLHHPV	0.9974	0.8368	0.1775	56.6	1.2647	NA	1/787	1/4234
Fusion	Breast	MLLT6--ACE	HLA-B07:05	WPHGPPAQV	0.9976	0.6564	0.2396	102.5	0.3507	NA	1/787	1/4234
Fusion	Breast	NFIX--DAND5	HLA-A02:03	FLNIPQQSQV	0.9984	0.6227	0.1354	5.5	0.0727	NA	1/787	1/4234
Fusion	Breast	NLK--BCAS3	HLA-A02:03	FQAQSPIQQV	0.9943	0.7535	0.3413	29.3	0.7344	NA	1/787	1/4234
Fusion	Breast	ODF2--SLC27A4	HLA-A02:03	CLKSEATMLL	0.9926	0.7131	1.1855	52.5	1.2011	NA	1/787	1/4234
Fusion	Breast	ODF2--SLC27A4	HLA-A02:03	LLGASLVGVL	0.9867	0.8292	1.0678	31.5	0.7901	NA	1/787	1/4234
Fusion	Breast	ODF2--SLC27A4	HLA-A02:03	MLLGASLVGV	0.9991	0.7884	0.0356	6.2	0.0899	NA	1/787	1/4234
Fusion	Breast	ODF2--SLC27A4	HLA-A02:03	YLGSGGWRFI	0.9818	0.6963	0.3914	48.4	1.1305	NA	1/787	1/4234
Fusion	Breast	ODF2--SLC27A4	HLA-A29:01	LYLGSGGWRF	0.9817	0.5275	0.4078	464.8	0.9955	NA	1/787	1/4234
Fusion	Breast	ODF2--SLC27A4	HLA-C15:05	KTIRPTLLVM	0.9989	0.8305	0.2896	487.4	0.3275	NA	1/787	1/4234
Fusion	Breast	ODF2--SLC27A4	HLA-A02:03	MLLGASLVGVL	0.9955	0.6882	1.9339	82.7	1.6764	NA	1/787	1/4234
Fusion	Breast	ODF2--SLC27A4	HLA-A02:03	TMLLGASLVGV	0.9928	0.7195	1.7896	48.6	1.1337	NA	1/787	1/4234
Fusion	Breast	ODF2--SLC27A4	HLA-A29:01	GFSLLFLY	0.9988	0.5688	1.6177	116.5	0.4602	NA	1/787	1/4234
Fusion	Breast	ODF2--SLC27A4	HLA-A02:03	LLGASLVGV	0.9972	0.8984	0.0904	5.1	0.059	NA	1/787	1/4234
Fusion	Breast	ODF2--SLC27A4	HLA-A02:03	TMLLGASLV	0.9769	0.6975	0.2183	32.6	0.8165	NA	1/787	1/4234
Fusion	Breast	ODF2--SLC27A4	HLA-A29:01	VGFSLLFLY	0.9976	0.5753	0.4001	7.6	0.02	NA	1/787	1/4234
Fusion	Breast	ODF2--SLC27A4	HLA-A29:01	YLGSGGWRF	0.8909	0.6404	0.6973	119.1	0.4674	NA	1/787	1/4234
Fusion	Breast	ODF2--SLC27A4	HLA-C15:05	KTIRPTLLV	0.9996	0.8412	0.0658	50.9	0.0133	NA	1/787	1/4234
Fusion	Breast	RBM28--KMT2C	HLA-C07:02	VRIKEIGLL	0.8364	0.9177	0.3427	316.2	0.209	NA	1/787	1/4234
Fusion	Breast	STK11--GPX4	HLA-A02:03	WLTWTSTGA	0.955	0.6403	1.1117	21.7	0.5452	NA	1/787	1/4234
Fusion	Breast	STK11--GPX4	HLA-B07:05	AVRAPCTSF	0.9966	0.6935	0.3461	167.4	0.4814	NA	1/787	1/4234
Fusion	Breast	STK11--GPX4	HLA-B07:05	SPTWPPSEA	0.9935	0.577	0.3514	138	0.424	NA	1/787	1/4234
Fusion	Breast	DAB2IP--WDR38	HLA-B58:01	LAFCKIINSYW	0.9996	0.6912	0.8562	21	0.1382	NA	1/787	1/4234
Fusion	Breast	DAB2IP--WDR38	HLA-C03:02	IINSYWSTL	0.9637	0.9404	1.0757	159.8	0.6439	NA	1/787	1/4234
Fusion	Breast	DAB2IP--WDR38	HLA-C03:02	STLLPSPLM	0.9738	0.9754	0.8859	257.6	0.9249	NA	1/787	1/4234
Fusion	Breast	NFIX--RAD23A	HLA-C03:02	LAYFVHTPA	0.9845	0.9727	0.356	70.3	0.3414	NA	1/787	1/4234
Fusion	Breast	SREBF2--FMNL2	HLA-B58:01	KAGDQEEESW	0.9978	0.9658	0.5128	72.2	0.3784	NA	1/787	1/4234
Fusion	Breast	SREBF2--FMNL2	HLA-C03:02	WFVEKNSAL	0.8608	0.9595	1.3695	476.8	1.4146	NA	1/787	1/4234
Fusion	Breast	WDFY3--KCNIP4	HLA-C03:02	TSVEQGSGY	0.6824	0.9627	0.8859	454.6	1.3709	NA	1/787	1/4234
Fusion	Breast	DOCK8--GLIPR2	HLA-A24:02	WYGRTPRRWAW	0.9887	0.8317	1.9269	436	0.6009	NA	1/787	1/4234
Fusion	Breast	DOCK8--GLIPR2	HLA-B07:05	RPQVTGPPL	0.9996	0.6348	0.1354	2.9	0.0062	NA	1/787	1/4234
Fusion	Breast	DHX40--ACSM2B	HLA-C03:02	FIRPGGEGI	0.723	0.9577	0.3542	285.8	0.9978	NA	1/787	1/4234
Fusion	Breast	DHX40--ACSM2B	HLA-C03:04	FIRPGGEGI	0.779	0.9816	0.1963	376	0.8263	NA	1/787	1/4234
Fusion	Breast	MLLT10--SNTG1	HLA-B13:01	SQQLTPVQVL	0.7024	0.9601	0.6429	493.6	0.3794	NA	1/787	1/4234
Fusion	Breast	MLLT10--SNTG1	HLA-B13:01	QQLTPVQVL	0.712	0.9901	0.3386	175.1	0.1029	NA	1/787	1/4234
Fusion	Breast	SKIV2L2--CETN3	HLA-C15:05	RAIPGVVEI	0.9997	0.9466	0.0495	63.8	0.022	NA	1/787	1/4234
Fusion	Breast	GOLM1--ZCCHC6	HLA-C08:01	YQDEKIPLI	0.9673	0.9797	0.0383	146.8	0.0477	NA	1/787	1/4234
Fusion	Breast	NEMF--SOS2	HLA-B15:02	LSLVHVVVY	0.997	0.8698	0.0177	381.3	0.5781	NA	1/787	1/4234
Fusion	Breast	SOX5--DTD2	HLA-B15:02	IQVQRGLVIY	0.9289	0.7321	0.2841	287.2	0.4682	NA	1/787	1/4234
Fusion	Breast	SOX5--DTD2	HLA-B15:02	QVQRGLVIY	0.9711	0.7989	0.433	400.1	0.5965	NA	1/787	1/4234
Fusion	Breast	PRPF6--SDC4	HLA-C03:04	TSVDPRQTI	0.997	0.9673	0.3089	259.8	0.6639	NA	1/787	1/4234
Fusion	Breast	TRAPPC9--SSBP3	HLA-A02:06	LQWDSILLLI	0.9858	0.5685	0.5583	24.2	0.3089	NA	1/787	1/4234
Fusion	Breast	TRAPPC9--SSBP3	HLA-A02:06	SILLLITWYL	0.9424	0.6608	1.12	222.1	1.9482	NA	1/787	1/4234
Fusion	Breast	TRAPPC9--SSBP3	HLA-A02:06	ILLLITWYL	0.9341	0.6071	0.2557	31.6	0.4003	NA	1/787	1/4234
Fusion	Breast	TRAPPC9--SSBP3	HLA-A02:06	LQWDSILLL	0.9853	0.7204	0.2464	9.2	0.0909	NA	1/787	1/4234
Fusion	Breast	DEPDC5--DRG1	HLA-B35:01	LLHPLGSGGSY	0.9893	0.8495	1.0474	381.2	0.7409	NA	1/787	1/4234
Fusion	Breast	DEPDC5--DRG1	HLA-B35:01	FPVGILRM	0.9964	0.9848	0.5312	181.8	0.464	NA	1/787	1/4234
Fusion	Breast	DEPDC5--DRG1	HLA-A11:01	HTFPVGILR	0.9977	0.757	0.0084	38.5	0.2349	NA	1/787	1/4234
Fusion	Breast	DEPDC5--DRG1	HLA-A30:01	HTFPVGILR	0.9717	0.9902	0.0686	325.5	1.4436	NA	1/787	1/4234
Fusion	Breast	DEPDC5--DRG1	HLA-A30:01	RMVQLRNLI	0.9191	0.8605	1.5977	447.8	1.8773	NA	1/787	1/4234
Fusion	Breast	DEPDC5--DRG1	HLA-B35:01	HPLGSGGSY	0.9964	0.9173	0.0356	15.2	0.0613	NA	1/787	1/4234
Fusion	Breast	DEPDC5--SFI1	HLA-B35:01	LLHPLGSGGSY	0.9893	0.8495	1.0474	381.2	0.7409	NA	1/787	1/4234
Fusion	Breast	DEPDC5--SFI1	HLA-B35:01	FPVGILRM	0.9964	0.9848	0.5312	181.8	0.464	NA	1/787	1/4234
Fusion	Breast	DEPDC5--SFI1	HLA-A11:01	HTFPVGILR	0.9977	0.757	0.0084	38.5	0.2349	NA	1/787	1/4234
Fusion	Breast	DEPDC5--SFI1	HLA-A30:01	HTFPVGILR	0.9717	0.9902	0.0686	325.5	1.4436	NA	1/787	1/4234
Fusion	Breast	DEPDC5--SFI1	HLA-A30:01	RMVQLRNLI	0.9191	0.8605	1.5977	447.8	1.8773	NA	1/787	1/4234
Fusion	Breast	DEPDC5--SFI1	HLA-B35:01	HPLGSGGSY	0.9964	0.9173	0.0356	15.2	0.0613	NA	1/787	1/4234
Fusion	Breast	DUSP7--PBRM1	HLA-B35:01	FPEAISFIGM	0.9949	0.884	0.3717	18.1	0.0745	NA	1/787	1/4234
Fusion	Breast	DUSP7--PBRM1	HLA-B35:01	FPEAISFIGMM	0.999	0.8959	1.6875	138.4	0.3891	NA	1/787	1/4234
Fusion	Breast	DUSP7--PBRM1	HLA-B35:01	EAISFIGMM	0.9713	0.7785	0.9336	207.8	0.5034	NA	1/787	1/4234
Fusion	Breast	EIF2AK2--RMDN2	HLA-A24:02	RYAVLCGYV	0.7902	0.7947	1.2078	373.8	0.5516	NA	1/787	1/4234
Fusion	Breast	EIF2AK2--RMDN2	HLA-C12:02	YTVDKRYAV	0.7031	0.9139	0.2239	109.3	0.1339	NA	1/787	1/4234
Fusion	Breast	NSMCE4A--ATE1	HLA-A24:02	AMPAQWMRI	0.9747	0.7782	0.8043	257.5	0.4349	NA	1/787	1/4234
Fusion	Breast	NSMCE4A--ATE1	HLA-B07:02	TPAWWGRSA	0.9975	0.5721	0.0396	29.9	0.1081	NA	1/787	1/4234
Fusion	Breast	CDC37--TYK2	HLA-B15:01	HQGHFGKVSL	0.9928	0.6459	0.8317	492.1	1.6789	NA	1/787	1/4234
Fusion	Breast	CDC37--TYK2	HLA-B15:01	HQGHFGKVSLY	0.9999	0.6695	0.2054	107.1	0.5568	NA	1/787	1/4234
Fusion	Breast	CDC37--TYK2	HLA-C07:02	FRWRHQGHF	0.8214	0.9304	0.4916	80.8	0.0416	NA	1/787	1/4234
Fusion	Breast	DLGAP1--RAB31	HLA-C03:04	KASFMTKTV	0.8592	0.9809	0.3717	495.8	1.0057	NA	1/787	1/4234
Fusion	Breast	EHBP1--BCL11A	HLA-A02:01	KVLHTPPFGV	0.9627	0.8051	0.4865	128.6	1.2442	NA	1/787	1/4234
Fusion	Breast	VASP--CYP2S1	HLA-B07:02	RARRSSPSL	0.9993	0.6281	0.463	8.9	0.0187	NA	1/787	1/4234
Fusion	Breast	VASP--CYP2S1	HLA-C03:04	RARRSSPSL	0.914	0.985	1.1369	119.1	0.4041	NA	1/787	1/4234
Fusion	Breast	ABL1--NUP214	HLA-A02:01	RLIGNLGYWRI	0.9858	0.6007	0.7376	60.8	0.7405	NA	1/787	1/4234
Fusion	Breast	ABL1--NUP214	HLA-A02:01	NLGYWRILV	0.9092	0.7432	0.6875	157.3	1.4237	NA	1/787	1/4234
Fusion	Breast	OSBPL9--CYP4Z1	HLA-A02:01	IVLLQIAKV	0.9317	0.5368	0.4808	246.8	1.8837	NA	1/787	1/4234
Fusion	Breast	ABL1--NUP214	HLA-A30:01	KSHSLSSVL	0.9826	0.8774	1.0116	59.1	0.3032	NA	1/787	1/4234
Fusion	Breast	ERLIN2--FGFR1	HLA-A30:01	RNYELMVSLK	0.9926	0.8726	1.014	297.3	1.3366	NA	1/787	1/4234
Fusion	Breast	ERLIN2--FGFR1	HLA-C07:02	RRNYELMVSL	0.9898	0.9611	0.5868	487.4	0.3202	NA	1/787	1/4234
Fusion	Breast	ARHGEF11--ETV3	HLA-A24:02	VPFPTSGHPF	0.8875	0.5267	1.276	402.9	0.5755	NA	1/787	1/4234
Fusion	Breast	ARHGEF11--ETV3	HLA-C15:05	TSANSLFPV	0.9995	0.9394	0.8771	229.9	0.1414	NA	1/787	1/4234
Fusion	Breast	GALNT7--SAP30	HLA-C12:03	LSRMRARHL	0.6934	0.9834	1.4289	265.3	0.9962	NA	1/787	1/4234
Fusion	Breast	KCNQ1--TSPAN32	HLA-B15:01	MLLGLSVATM	0.9898	0.9104	1.7671	108.4	0.5621	NA	1/787	1/4234
Fusion	Breast	PBX3--PPFIA1	HLA-B13:02	RQFSQKQFPV	0.8521	0.9174	0.3987	271.8	0.0233	NA	1/787	1/4234
Fusion	Breast	PBX3--PPFIA1	HLA-B13:02	KQFPVWNYV	0.969	0.9948	0.0412	126.9	0.009	NA	1/787	1/4234
Fusion	Breast	TANC2--ACE	HLA-A02:01	ILKAHIFKL	0.9391	0.6062	0.0344	42.4	0.5471	NA	1/787	1/4234
Fusion	Breast	TM2D2--MSI2	HLA-B44:03	QELGYGCLKM	0.9914	0.9753	0.7473	196.1	0.211	NA	1/787	1/4234
Fusion	Breast	CYB5RL--TTC39A	HLA-C06:02	LRYTQEMMYI	0.7393	0.9956	1.5935	300.8	0.1037	NA	1/787	1/4234
Fusion	Breast	CYB5RL--TTC39A	HLA-C07:02	LRYTQEMMY	0.9257	0.9692	0.0919	298.7	0.1966	NA	1/787	1/4234
Fusion	Breast	HSPA9--ARL15	HLA-C07:02	FYSPAHWM	0.9655	0.9549	0.7833	368.7	0.2436	NA	1/787	1/4234
Fusion	Breast	HSPA9--ARL15	HLA-B07:02	SPAHWMTWM	0.987	0.513	1.221	64.3	0.2094	NA	1/787	1/4234
Fusion	Breast	ACLY--DNAJC7	HLA-A03:01	AVLAASALKH	0.9215	0.6594	1.2269	326.3	0.9045	NA	1/787	1/4234
Fusion	Breast	ACLY--DNAJC7	HLA-A11:01	AVLAASALKH	0.9514	0.5383	1.1763	144.1	0.7943	NA	1/787	1/4234
Fusion	Breast	ACLY--DNAJC7	HLA-A03:01	AVLAASALK	0.9984	0.6619	0.0465	25.5	0.0728	NA	1/787	1/4234
Fusion	Breast	ACLY--DNAJC7	HLA-A11:01	AVLAASALK	0.9995	0.5377	0.0299	8.5	0.0186	NA	1/787	1/4234
Fusion	Breast	ACLY--DNAJC7	HLA-B35:01	LAVLAASAL	0.9317	0.8823	0.5365	68.2	0.2424	NA	1/787	1/4234
Fusion	Breast	ACLY--DNAJC7	HLA-B35:01	NASGSTSIL	0.8696	0.9264	1.0924	489.1	0.869	NA	1/787	1/4234
Fusion	Breast	TMEM265--MVP	HLA-B35:01	FAIKGEKSFF	0.991	0.8861	0.3427	345.2	0.6939	NA	1/787	1/4234
Fusion	Breast	TMEM265--MVP	HLA-B35:01	FAIKGEKSF	0.9864	0.8601	0.0187	23	0.0936	NA	1/787	1/4234
Fusion	Breast	UVRAG--EMSY	HLA-A02:01	YLLNKNIAQV	0.9994	0.516	0.0142	7.4	0.0744	NA	1/787	1/4234
Fusion	Breast	UVRAG--EMSY	HLA-A02:01	YLLNKNIAQVL	0.9945	0.6406	1.7839	57.7	0.7074	NA	1/787	1/4234
Fusion	Breast	UVRAG--EMSY	HLA-A02:01	LLNKNIAQV	0.9974	0.6459	0.0008	18.5	0.2486	NA	1/787	1/4234
Fusion	Breast	DNTTIP2--GCLM	HLA-C12:03	LSFQMSWNAL	0.9867	0.9926	1.9543	281.6	1.0404	NA	1/787	1/4234
Fusion	Breast	DNTTIP2--GCLM	HLA-C12:03	MSWNALYL	0.9944	0.9785	0.8749	460.3	1.4673	NA	1/787	1/4234
Fusion	Breast	DNTTIP2--GCLM	HLA-C07:02	FQMSWNALY	0.8909	0.986	0.6929	297.1	0.1956	NA	1/787	1/4234
Fusion	Breast	DNTTIP2--GCLM	HLA-C12:03	FQMSWNALY	0.6058	0.9886	0.7726	30.8	0.1236	NA	1/787	1/4234
Fusion	Breast	DNTTIP2--GCLM	HLA-C12:03	MSWNALYLM	0.7729	0.9804	1.1472	67.2	0.3174	NA	1/787	1/4234
Fusion	Breast	SUSD1--UGCG	HLA-A02:01	SLIASSQVSL	0.9807	0.6916	0.8024	267.6	1.9793	NA	1/787	1/4234
Fusion	Breast	SUSD1--UGCG	HLA-C03:04	IASSQVSLF	0.9989	0.9889	0.458	142.4	0.4542	NA	1/787	1/4234
Fusion	Breast	SUSD1--UGCG	HLA-C03:04	LIASSQVSL	0.9995	0.9852	0.6173	57.4	0.238	NA	1/787	1/4234
Fusion	Breast	SUSD1--UGCG	HLA-C07:02	TRRQLTNSL	0.7984	0.8345	0.2428	201.6	0.1308	NA	1/787	1/4234
Fusion	Breast	EEF1A2--DKKL1	HLA-B15:01	AQFTSQVPRM	0.999	0.9686	0.4061	52.7	0.2708	NA	1/787	1/4234
Fusion	Breast	EEF1A2--DKKL1	HLA-B07:02	LPRRRSHQDAL	0.9999	0.5895	0.5657	24.4	0.0879	NA	1/787	1/4234
Fusion	Breast	EEF1A2--DKKL1	HLA-B15:01	RLSPRKTHLLY	0.9997	0.7608	0.4916	223.6	0.9929	NA	1/787	1/4234
Fusion	Breast	EEF1A2--DKKL1	HLA-B15:01	IQKATDSF	0.9995	0.6007	0.5165	279	1.172	NA	1/787	1/4234
Fusion	Breast	EEF1A2--DKKL1	HLA-A02:01	WLSEKRHRL	0.9212	0.6185	0.4438	163.2	1.4544	NA	1/787	1/4234
Fusion	Breast	EEF1A2--DKKL1	HLA-C07:02	RRRSHQDAL	0.8004	0.9536	0.7808	303.1	0.1995	NA	1/787	1/4234
Fusion	Breast	TMEM189--KCNC3	HLA-A02:01	ALYSPVCGL	0.9775	0.5714	0.1448	40.1	0.5211	NA	1/787	1/4234
Fusion	Breast	EFNA1--CPB1	HLA-A02:01	ILSHKSNLTV	0.9304	0.7296	0.6715	165.1	1.4643	NA	1/787	1/4234
Fusion	Breast	EFNA1--CPB1	HLA-A02:01	NLTVQLTSV	0.9513	0.7533	0.3914	152	1.3942	NA	1/787	1/4234
Fusion	Breast	EFNA1--CPB1	HLA-C03:03	LSHKSNLTV	0.9283	0.9946	0.7151	209.9	0.5808	NA	1/787	1/4234
Fusion	Breast	EFNA1--CPB1	HLA-C03:03	LTVQLTSVL	0.9991	0.9904	0.6408	28.8	0.1266	NA	1/787	1/4234
Fusion	Breast	ACACA--MED24	HLA-C07:01	LRASWPPPL	0.9915	0.8571	0.4933	90.9	0.0341	NA	1/787	1/4234
Fusion	Breast	ERBB2--MED1	HLA-C12:02	HSFSWASPI	0.8637	0.9565	0.9432	43.2	0.0482	NA	1/787	1/4234
Fusion	Breast	FBXL20--RPL23	HLA-A31:01	RNSGFPWVFR	0.9848	0.7827	0.1547	12.8	0.0726	NA	1/787	1/4234
Fusion	Breast	FBXL20--RPL23	HLA-A31:01	NSGFPWVFR	0.9193	0.7658	0.1963	37	0.3006	NA	1/787	1/4234
Fusion	Breast	FBXL20--RPL23	HLA-C07:01	VRNSGFPWV	0.9128	0.8058	1.2692	391.7	0.1375	NA	1/787	1/4234
Fusion	Breast	GNAS--NECTIN2	HLA-A02:01	YLPAAAEGA	0.8994	0.8515	0.6252	238.3	1.8391	NA	1/787	1/4234
Fusion	Breast	GNAS--NECTIN2	HLA-C07:01	RRPGGTSLL	0.9855	0.7788	0.1498	334.4	0.1203	NA	1/787	1/4234
Fusion	Breast	KIAA0319L--PHC2	HLA-A31:01	RGIPCPGNRR	0.9189	0.9238	0.5868	120.8	0.8671	NA	1/787	1/4234
Fusion	Breast	KIAA0319L--PHC2	HLA-A31:01	RGIPCPGNR	0.9353	0.8978	0.5296	75.5	0.6067	NA	1/787	1/4234
Fusion	Breast	PIP4K2B--FBXL20	HLA-A02:01	VLMWGVNHTM	0.9612	0.5651	0.356	103.7	1.0814	NA	1/787	1/4234
Fusion	Breast	PIP4K2B--FBXL20	HLA-A02:01	LMWGVNHTM	0.9803	0.5875	0.033	16	0.1983	NA	1/787	1/4234
Fusion	Breast	PIP4K2B--FBXL20	HLA-C12:02	LMWGVNHTM	0.9862	0.9319	0.296	348.1	0.4911	NA	1/787	1/4234
Fusion	Breast	STK24--DOCK9	HLA-A02:01	YLKPYTASL	0.9809	0.7616	0.0214	11.8	0.1414	NA	1/787	1/4234
Fusion	Breast	STK24--DOCK9	HLA-B08:01	YLKPYTASL	0.9981	0.5255	0.0686	12.8	0.0121	NA	1/787	1/4234
Fusion	Breast	STK24--DOCK9	HLA-C12:02	YLKPYTASL	0.9994	0.9857	0.0948	36.7	0.0363	NA	1/787	1/4234
Fusion	Breast	LPCAT2--CACTIN	HLA-A02:06	QLFTKVEVEV	0.9948	0.6074	1.0757	185.6	1.7226	NA	1/787	1/4234
Fusion	Breast	RPS9--TSEN34	HLA-B27:05	RRLFEGDPLR	0.9998	0.6106	0.6173	26.1	0.0527	NA	1/787	1/4234
Fusion	Breast	RPS9--TSEN34	HLA-B27:05	RRLFEGDPLRF	1	0.7337	0.1704	128.5	0.4253	NA	1/787	1/4234
Fusion	Breast	RPS9--TSEN34	HLA-B27:05	RRLFEGDPL	0.9994	0.8714	0.721	79.8	0.2656	NA	1/787	1/4234
Fusion	Breast	AKT2--YIF1B	HLA-B38:01	FHVDSPDESL	0.9973	0.8941	0.0109	291.2	0.0464	NA	1/787	1/4234
Fusion	Breast	CLIC4--SLC45A1	HLA-C12:03	FVKGRPPAL	0.9987	0.9727	0.1761	28.1	0.1113	NA	1/787	1/4234
Fusion	Breast	MTBP--PQLC2	HLA-A02:01	LLLQVQDAPL	0.9699	0.648	1.0547	99.2	1.0528	NA	1/787	1/4234
Fusion	Breast	MTBP--PQLC2	HLA-B07:02	RPGDADAVLL	0.9724	0.6954	0.3386	289.3	0.6039	NA	1/787	1/4234
Fusion	Breast	MTBP--PQLC2	HLA-B07:02	TFPDLHGCVL	0.6957	0.5222	1.014	322.9	0.647	NA	1/787	1/4234
Fusion	Breast	MTBP--PQLC2	HLA-A02:01	LLQVQDAPL	0.9039	0.7437	1.403	218.8	1.7417	NA	1/787	1/4234
Fusion	Breast	MTBP--PQLC2	HLA-B07:02	RPGDADAVL	0.9971	0.6354	0.1435	65.8	0.2136	NA	1/787	1/4234
Fusion	Breast	MTBP--PQLC2	HLA-C12:03	QVQDAPLSV	0.9634	0.9883	0.4078	440.4	1.425	NA	1/787	1/4234
Fusion	Breast	PQLC2--SCMH1	HLA-A02:01	FAASTFPSV	0.9933	0.8059	0.0919	19.8	0.2684	NA	1/787	1/4234
Fusion	Breast	PQLC2--SCMH1	HLA-C12:03	FAASTFPSV	0.9963	0.9925	0.2197	6.8	0.0106	NA	1/787	1/4234
Fusion	Breast	PQLC2--SCMH1	HLA-C12:03	STFPSVKRI	0.7213	0.957	0.0762	85	0.3886	NA	1/787	1/4234
Fusion	Breast	TMCO4--MAP7D1	HLA-C12:03	LSFSLKDAV	0.897	0.9448	1.3243	133.1	0.5832	NA	1/787	1/4234
Fusion	Breast	METTL15--SLC1A3	HLA-B35:02	YPNMFPPNL	0.9955	0.7867	0.2636	38.9	0.0098	NA	1/787	1/4234
Fusion	Breast	NANS--NCBP1	HLA-A26:01	ELVVLPSAY	0.9874	0.5872	0.6949	260.5	0.1271	NA	1/787	1/4234
Fusion	Breast	NANS--NCBP1	HLA-B27:05	IRYCSSYLL	0.9995	0.9078	0.6737	26.8	0.0546	NA	1/787	1/4234
Fusion	Breast	NANS--NCBP1	HLA-C02:02	YIRYCSSYL	0.5863	0.9786	1.473	322.4	0.195	NA	1/787	1/4234
Fusion	Breast	MSI2--PCTP	HLA-B15:01	RAQPKKTGLY	0.9983	0.7574	0.9455	206	0.9342	NA	1/787	1/4234
Fusion	Breast	MSI2--PCTP	HLA-B15:01	AQPKKTGLYEY	0.9999	0.6935	0.2367	370.6	1.4224	NA	1/787	1/4234
Fusion	Breast	MSI2--PCTP	HLA-B15:01	AQPKKTGLY	0.9992	0.7202	0.241	141.9	0.704	NA	1/787	1/4234
Fusion	Breast	UBN1--LAMA5	HLA-B15:01	RVKELAQGQY	0.9998	0.7156	0.0686	126.9	0.6415	NA	1/787	1/4234
Fusion	Breast	AP2M1--PHF2	HLA-C12:03	GARHRHIPL	0.9227	0.9708	0.8771	373.9	1.2786	NA	1/787	1/4234
Fusion	Breast	COQ4--DNM1	HLA-A02:01	HLLGAAGQPV	0.988	0.6732	0.6429	141.1	1.3223	NA	1/787	1/4234
Fusion	Breast	COQ4--DNM1	HLA-B38:01	YRHDQGVHLL	0.9983	0.9768	0.1566	64.7	0.0097	NA	1/787	1/4234
Fusion	Breast	COQ4--DNM1	HLA-C06:02	YRHDQGVHLL	0.9526	0.9949	0.0643	27.9	0.009	NA	1/787	1/4234
Fusion	Breast	COQ4--DNM1	HLA-A02:01	LLGAAGQPV	0.9709	0.6783	0.5264	84.9	0.9486	NA	1/787	1/4234
Fusion	Breast	COQ4--DNM1	HLA-B38:01	RHDQGVHLL	0.9981	0.9848	0.0021	70	0.0099	NA	1/787	1/4234
Fusion	Breast	COQ4--DNM1	HLA-C12:03	HAPARGRLL	0.727	0.9848	0.4808	187.7	0.7824	NA	1/787	1/4234
Fusion	Breast	ESCO1--ABHD3	HLA-C12:03	FISAVKYVM	0.9984	0.9462	0.3753	87.8	0.3986	NA	1/787	1/4234
Fusion	Breast	GPAT3--MRPS18C	HLA-A02:01	NLLRNVSCV	0.9244	0.5517	0.5657	164.8	1.4627	NA	1/787	1/4234
Fusion	Breast	GPAT3--MRPS18C	HLA-C12:03	VVHNRYPAM	0.9812	0.946	0.5512	36.4	0.1543	NA	1/787	1/4234
Fusion	Breast	MAML2--CNTN5	HLA-A02:01	FLCKNQMIL	0.9814	0.6424	0.3956	56.5	0.6953	NA	1/787	1/4234
Fusion	Breast	MAML2--CNTN5	HLA-B38:01	NQMILFFQL	0.7191	0.9253	1.0214	356.4	0.0581	NA	1/787	1/4234
Fusion	Breast	MAML2--CNTN5	HLA-B47:01	NQMILFFQL	0.6832	0.5824	1.276	170.6	0.0329	NA	1/787	1/4234
Fusion	Breast	MAML2--CNTN5	HLA-C12:03	KVWTMGQFL	0.5459	0.9861	1.1501	471	1.4894	NA	1/787	1/4234
Fusion	Breast	NFIX--DAND5	HLA-A02:01	SLLLSLHPWL	0.9158	0.7244	1.3596	69.5	0.8229	NA	1/787	1/4234
Fusion	Breast	NFIX--DAND5	HLA-A02:01	SVLWSLLLSL	0.9127	0.6032	1.2828	24.6	0.3367	NA	1/787	1/4234
Fusion	Breast	NFIX--DAND5	HLA-A02:01	WLGPHPTSPV	0.9844	0.6213	0.6911	91	0.9968	NA	1/787	1/4234
Fusion	Breast	NFIX--DAND5	HLA-A02:01	LLLSLHPWL	0.9783	0.6745	0.3124	16.9	0.2174	NA	1/787	1/4234
Fusion	Breast	NFIX--DAND5	HLA-A02:01	VLWSLLLSL	0.9512	0.6871	0.23	12.5	0.1497	NA	1/787	1/4234
Fusion	Breast	NFIX--DAND5	HLA-B38:01	HHADRGVSL	0.9993	0.9853	0.0031	218.6	0.0319	NA	1/787	1/4234
Fusion	Breast	NFIX--DAND5	HLA-C12:03	HTPPKSSVL	0.9844	0.9647	0.3753	123.6	0.544	NA	1/787	1/4234
Fusion	Breast	NFIX--DAND5	HLA-C12:03	QLYACSQAL	0.9924	0.948	1.5528	318.3	1.1356	NA	1/787	1/4234
Fusion	Breast	NFIX--DAND5	HLA-C12:03	SSVLWSLLL	0.7999	0.9905	0.9841	164.1	0.695	NA	1/787	1/4234
Fusion	Breast	NFIX--DAND5	HLA-C12:03	VVSHWQLSL	0.9897	0.9665	0.8149	134.2	0.5876	NA	1/787	1/4234
Fusion	Breast	NFIX--DAND5	HLA-C12:03	YFVHTPGVL	0.5259	0.9767	1.1056	254.1	0.9707	NA	1/787	1/4234
Fusion	Breast	TARBP1--RBM34	HLA-C06:02	YRFCSSCSEI	0.7601	0.9795	1.9828	216.2	0.0776	NA	1/787	1/4234
Fusion	Breast	ARHGAP35--YWHAZ	HLA-A31:01	KVLDPQCFTSR	0.9983	0.717	0.0037	39.4	0.3234	NA	1/787	1/4234
Fusion	Breast	ARHGAP35--YWHAZ	HLA-B18:03	NERRLLPLL	0.7669	0.5734	1.3306	412.8	0.1439	NA	1/787	1/4234
Fusion	Breast	ARHGAP35--YWHAZ	HLA-C03:04	FTSREQSLL	0.9981	0.986	1.1027	261.4	0.6663	NA	1/787	1/4234
Fusion	Breast	CD151--CRACR2B	HLA-A31:01	LQQERRGRR	0.8222	0.6024	1.4821	378.4	1.7821	NA	1/787	1/4234
Fusion	Breast	CDK8--NPIPB15	HLA-A31:01	VWLSIVIVR	0.9134	0.5061	0.766	204.9	1.2274	NA	1/787	1/4234
Fusion	Breast	BPTF--ABCC3	HLA-A31:01	KTRTSLPASR	0.9944	0.6288	0.2841	11.4	0.0625	NA	1/787	1/4234
Fusion	Breast	BPTF--ABCC3	HLA-A31:01	SSSPTCPSSR	0.9636	0.5794	0.6949	172.8	1.0881	NA	1/787	1/4234
Fusion	Breast	BPTF--ABCC3	HLA-A31:01	VSCCGASPGR	0.9154	0.6921	1.6082	298.4	1.5586	NA	1/787	1/4234
Fusion	Breast	BPTF--ABCC3	HLA-C12:03	WSMAGPLPLF	0.9956	0.9731	1.6127	215.5	0.8711	NA	1/787	1/4234
Fusion	Breast	BPTF--ABCC3	HLA-C12:03	MAWSMAGPLPL	0.9975	0.9862	1.9269	475	1.4975	NA	1/787	1/4234
Fusion	Breast	BPTF--ABCC3	HLA-A31:01	RTSLPASR	0.9942	0.7077	1.6274	144.6	0.976	NA	1/787	1/4234
Fusion	Breast	BPTF--ABCC3	HLA-C12:03	RTFFTPSM	0.9787	0.9632	0.9549	363.7	1.2523	NA	1/787	1/4234
Fusion	Breast	BPTF--ABCC3	HLA-A02:01	FLNRRLIMT	0.9113	0.6229	1.6127	99.6	1.0556	NA	1/787	1/4234
Fusion	Breast	BPTF--ABCC3	HLA-C12:03	FTPSMAWSM	0.7584	0.9911	0.7767	93.1	0.4212	NA	1/787	1/4234
Fusion	Breast	BPTF--ABCC3	HLA-C12:03	GASPGRTFF	0.8594	0.9832	0.3639	155.6	0.6664	NA	1/787	1/4234
Fusion	Breast	BPTF--ABCC3	HLA-C12:03	MAWSMAGPL	0.9498	0.9816	0.721	41.1	0.1773	NA	1/787	1/4234
Fusion	Breast	BPTF--ABCC3	HLA-C12:03	RTFFTPSMA	0.6081	0.9519	1.2968	437.8	1.4192	NA	1/787	1/4234
Fusion	Breast	BPTF--ABCC3	HLA-C12:03	SMAGPLPLF	0.8842	0.9577	0.6079	308.8	1.1108	NA	1/787	1/4234
Fusion	Breast	BPTF--ABCC3	HLA-C12:03	WSMAGPLPL	0.993	0.9719	0.7304	14	0.044	NA	1/787	1/4234
Fusion	Breast	EHHADH--ABCC5	HLA-C12:03	VSSVGVVEI	0.8967	0.9557	0.7151	287.5	1.056	NA	1/787	1/4234
Fusion	Breast	ERN1--SMTNL2	HLA-C12:03	LLLPGLGSL	0.9958	0.991	0.7058	409.5	1.3594	NA	1/787	1/4234
Fusion	Breast	FOXK2--ABCA5	HLA-C12:03	QSAPDYSVF	0.9389	0.9718	0.1383	181.6	0.7604	NA	1/787	1/4234
Fusion	Breast	MSI2--CA10	HLA-B39:01	RRAQPKFLL	0.9819	0.9062	0.7172	403	0.4008	NA	1/787	1/4234
Fusion	Breast	PRKCI--TNIK	HLA-A31:01	GVLWCWLCHR	0.9646	0.7376	0.7438	20.1	0.1438	NA	1/787	1/4234
Fusion	Breast	PRKCI--TNIK	HLA-B44:02	EEVGDGVLWCW	0.9996	0.9139	0.1255	138.2	0.167	NA	1/787	1/4234
Fusion	Breast	PRKCI--TNIK	HLA-A31:01	VLWCWLCHR	0.9721	0.7315	0.5128	35.1	0.2826	NA	1/787	1/4234
Fusion	Breast	PRKCI--TNIK	HLA-B44:02	EEVGDGVLW	0.9962	0.5778	0.1196	34.3	0.0397	NA	1/787	1/4234
Fusion	Breast	SHANK2--PGA5	HLA-B44:02	EVLEAHPVRAW	0.9853	0.8397	1.4654	57.1	0.0731	NA	1/787	1/4234
Fusion	Breast	SHANK2--PGA5	HLA-B44:02	LEAHPVRAW	0.9985	0.8762	0.0495	18.6	0.0112	NA	1/787	1/4234
Fusion	Breast	TEX2--TTYH2	HLA-A02:01	SLPAWDWPSA	0.8109	0.663	0.267	57.7	0.708	NA	1/787	1/4234
Fusion	Breast	TEX2--TTYH2	HLA-A02:01	SLSWTWSSA	0.9631	0.7734	0.7533	259.1	1.9419	NA	1/787	1/4234
Fusion	Breast	TEX2--TTYH2	HLA-A31:01	SAPSVSWPR	0.9534	0.7245	0.2868	49.1	0.4057	NA	1/787	1/4234
Fusion	Breast	TEX2--TTYH2	HLA-C12:03	VSWPRCCAV	0.8826	0.9757	0.8024	178.4	0.749	NA	1/787	1/4234
Fusion	Breast	TNRC6C--APPBP2	HLA-C12:03	SSINWPPAL	0.9934	0.938	0.1566	16.9	0.0556	NA	1/787	1/4234
Fusion	Breast	USP22--SLC39A11	HLA-A02:01	SLLELDLGL	0.992	0.5876	0.2335	8.3	0.0893	NA	1/787	1/4234
Fusion	Breast	ARMT1--RMND1	HLA-B27:05	RRIHEAIIQR	0.9999	0.7993	0.0822	23.9	0.0449	NA	1/787	1/4234
Fusion	Breast	ARMT1--RMND1	HLA-B27:05	RRIHEAIIQRT	0.9999	0.78	0.2712	322.7	0.8976	NA	1/787	1/4234
Fusion	Breast	ARMT1--RMND1	HLA-B27:05	YRRIHEAIIQR	0.9997	0.8382	0.241	200.7	0.6206	NA	1/787	1/4234
Fusion	Breast	PLD6--COPS3	HLA-B27:05	LRKADLFNSI	0.9991	0.9436	1.7372	419.6	1.0905	NA	1/787	1/4234
Fusion	Breast	SCUBE2--DENND5A	HLA-B27:05	KRRLLMEKAI	0.9985	0.7881	1.3695	186.6	0.5839	NA	1/787	1/4234
Fusion	Breast	SCUBE2--DENND5A	HLA-B27:05	KRVKRRLLMEK	0.9998	0.9197	0.9841	77.7	0.2583	NA	1/787	1/4234
Fusion	Breast	SCUBE2--DENND5A	HLA-B27:05	RRLLMEKAIEL	1	0.7497	0.3057	56.6	0.1853	NA	1/787	1/4234
Fusion	Breast	SCUBE2--DENND5A	HLA-B27:05	KRRLLMEK	0.9996	0.8926	1.9055	244.3	0.7323	NA	1/787	1/4234
Fusion	Breast	SCUBE2--DENND5A	HLA-B27:05	KRRLLMEKA	0.9965	0.7894	1.3344	462.5	1.1754	NA	1/787	1/4234
Fusion	Breast	SCUBE2--DENND5A	HLA-B27:05	RRLLMEKAI	0.9997	0.7146	0.4563	46.4	0.136	NA	1/787	1/4234
Fusion	Breast	PEX5--CLSTN3	HLA-C12:02	TVIPSAATL	0.9904	0.9472	0.1196	131.3	0.1694	NA	1/787	1/4234
Fusion	Breast	FGGY--CDH17	HLA-B35:01	DAHAGGLDF	0.9425	0.8734	0.0962	63.8	0.2323	NA	1/787	1/4234
Fusion	Breast	GDPD1--COX8A	HLA-A02:01	GLDPVTPGDL	0.8666	0.5914	1.4064	124.9	1.2209	NA	1/787	1/4234
Fusion	Breast	GDPD1--COX8A	HLA-B15:01	FQRGIGRWAY	0.9999	0.9313	0.0904	13.8	0.0355	NA	1/787	1/4234
Fusion	Breast	LSM1--NSMCE2	HLA-A02:01	SLIEDIDTEV	0.9974	0.8674	0.1807	8	0.0838	NA	1/787	1/4234
Fusion	Breast	VPS13B--TERF1	HLA-B15:01	KMMNELHPW	0.92	0.8668	0.8294	162.2	0.7788	NA	1/787	1/4234
Fusion	Breast	UHRF1--ACTA2	HLA-C14:03	LFYRGKQGVM	0.9181	0.949	1.1225	222.7	0.665	NA	1/787	1/4234
Fusion	Breast	NUMA1--PITPNM1	HLA-A31:01	HLILPLPGRR	0.9442	0.896	0.9595	449.2	1.9604	NA	1/787	1/4234
Fusion	Breast	NUMA1--PITPNM1	HLA-A31:01	MTKPEPLQPR	0.9929	0.6605	0.0697	20.9	0.1503	NA	1/787	1/4234
Fusion	Breast	NUMA1--PITPNM1	HLA-A31:01	RWGQPVSLPR	0.9667	0.7531	0.4213	53.8	0.4519	NA	1/787	1/4234
Fusion	Breast	NUMA1--PITPNM1	HLA-B07:02	QPRWGQPVSL	0.9994	0.6966	0.0052	8.4	0.017	NA	1/787	1/4234
Fusion	Breast	NUMA1--PITPNM1	HLA-B07:02	RPHSTGCPAT	0.9892	0.5899	0.6692	106.1	0.3098	NA	1/787	1/4234
Fusion	Breast	NUMA1--PITPNM1	HLA-B07:02	RPHSTGCPATA	0.9998	0.6553	0.3089	137.6	0.3697	NA	1/787	1/4234
Fusion	Breast	NUMA1--PITPNM1	HLA-B07:02	QPRWGQPV	0.9982	0.612	1.0239	83.8	0.2589	NA	1/787	1/4234
Fusion	Breast	NUMA1--PITPNM1	HLA-A31:01	HLILPLPGR	0.9445	0.9155	0.1302	192.2	1.1737	NA	1/787	1/4234
Fusion	Breast	NUMA1--PITPNM1	HLA-A31:01	LILPLPGRR	0.9422	0.7535	0.3956	202.6	1.2179	NA	1/787	1/4234
Fusion	Breast	NUMA1--PITPNM1	HLA-A31:01	WGQPVSLPR	0.7557	0.7563	0.7456	285.6	1.5159	NA	1/787	1/4234
Fusion	Breast	NUMA1--PITPNM1	HLA-B07:02	QPRWGQPVS	0.9897	0.5421	0.4967	247.8	0.5451	NA	1/787	1/4234
Fusion	Breast	NUMA1--PITPNM1	HLA-B07:02	RPHSTGCPA	0.9989	0.56	0.463	14.9	0.0477	NA	1/787	1/4234
Fusion	Breast	PUS1--SFSWAP	HLA-C07:02	IRILAKQKL	0.907	0.9172	0.4167	426.8	0.2802	NA	1/787	1/4234
Fusion	Breast	ARRB1--TPCN2	HLA-B18:01	FEHPPRPEY	0.9995	0.7889	0.024	51.7	0.0365	NA	1/787	1/4234
Fusion	Breast	HACE1--FBLN1	HLA-A03:01	RMSSWRPAVR	0.993	0.5078	0.0631	135.9	0.4745	NA	1/787	1/4234
Fusion	Breast	HACE1--FBLN1	HLA-C05:01	RTDTGWPLI	0.9999	0.9784	0.1688	66.1	0.0363	NA	1/787	1/4234
Fusion	Breast	STRAP--MYO7A	HLA-A02:06	AAADFTARI	0.9066	0.6812	0.0658	183.9	1.7108	NA	1/787	1/4234
Fusion	Breast	CAPS2--GRID1	HLA-A02:01	SLIVAFTPV	0.977	0.7987	0.1734	6.9	0.0657	NA	1/787	1/4234
Fusion	Breast	CPM--KCNMA1	HLA-A02:01	ALLDGPFADL	0.9947	0.6759	0.0848	17.3	0.2236	NA	1/787	1/4234
Fusion	Breast	CPM--KCNMA1	HLA-A02:01	NMLCFGIYRL	0.9534	0.6847	1.2796	48.3	0.6113	NA	1/787	1/4234
Fusion	Breast	CPM--KCNMA1	HLA-A02:01	CLMQFDHNA	0.965	0.6689	0.5982	48.5	0.6131	NA	1/787	1/4234
Fusion	Breast	CPM--KCNMA1	HLA-A02:01	LLDGPFADL	0.983	0.7353	0.0932	151.8	1.3927	NA	1/787	1/4234
Fusion	Breast	CPM--KCNMA1	HLA-A02:01	MLCFGIYRL	0.973	0.7494	0.1761	15.8	0.1961	NA	1/787	1/4234
Fusion	Breast	CPM--KCNMA1	HLA-A02:01	SLIPPIREV	0.9979	0.7984	0.0037	22	0.3019	NA	1/787	1/4234
Fusion	Breast	CPM--KCNMA1	HLA-A02:01	SVLDSLMSA	0.9717	0.7199	0.1149	90.4	0.9925	NA	1/787	1/4234
Fusion	Breast	CPM--KCNMA1	HLA-C05:01	FNDNILTLI	0.9997	0.9284	0.3124	211.1	0.0965	NA	1/787	1/4234
Fusion	Breast	CPM--KCNMA1	HLA-C05:01	FTDEPDNAY	0.9821	0.9476	0.0861	191.9	0.0898	NA	1/787	1/4234
Fusion	Breast	CPM--KCNMA1	HLA-C05:01	LLDGPFADL	0.9998	0.9714	0.0282	112.8	0.061	NA	1/787	1/4234
Fusion	Breast	CPM--KCNMA1	HLA-C07:01	CRVAQLALL	0.9982	0.5967	0.645	334.7	0.1204	NA	1/787	1/4234
Fusion	Breast	CPM--KCNMA1	HLA-C07:01	YFNDNILTL	0.8405	0.5546	0.0131	79.7	0.0271	NA	1/787	1/4234
Fusion	Breast	GXYLT1--YAF2	HLA-C07:01	FRKPRPVSQL	0.9957	0.5467	0.2745	153.8	0.0599	NA	1/787	1/4234
Fusion	Breast	SHANK2--OPCML	HLA-B58:01	RTGDFLIEF	0.9933	0.9862	0.0109	76	0.3921	NA	1/787	1/4234
Fusion	Breast	TBC1D4--COMMD6	HLA-B58:01	RATDPSQNFY	0.9905	0.9394	0.5637	241.3	0.89	NA	1/787	1/4234
Fusion	Breast	TBC1D4--COMMD6	HLA-B58:01	RATDPSQNF	0.9768	0.9553	0.1435	153.1	0.6408	NA	1/787	1/4234
Fusion	Breast	CELSR1--CERK	HLA-C05:01	WFDSLHEEL	0.9997	0.9871	0.1915	387.3	0.1578	NA	1/787	1/4234
Fusion	Breast	GNAI3--SARS	HLA-A02:01	LLLLGRFRA	0.8614	0.6276	1.3988	184.4	1.5645	NA	1/787	1/4234
Fusion	Breast	MED24--IKZF3	HLA-A02:01	RVLDDSMKV	0.9877	0.6267	0.1242	90.7	0.9944	NA	1/787	1/4234
Fusion	Breast	PIGL--TBC1D26	HLA-C05:01	IIDNRQQEL	1	0.9632	0.0686	175.8	0.0853	NA	1/787	1/4234
Fusion	Breast	USP13--PIK3CA	HLA-B44:02	EELPALVQMKF	0.9998	0.6266	0.1581	281.3	0.2944	NA	1/787	1/4234
Fusion	Breast	VEZF1--ANKFN1	HLA-A02:01	FLFQKPSRWKL	0.9441	0.7679	0.4018	33.6	0.4472	NA	1/787	1/4234
Fusion	Breast	VEZF1--ANKFN1	HLA-B08:01	FQKPSRWKL	0.9719	0.7746	0.6273	321.8	0.5302	NA	1/787	1/4234
Fusion	Breast	FRAS1--DCK	HLA-B18:01	LEHAASPGTY	0.9669	0.9137	0.4475	291.1	0.1926	NA	1/787	1/4234
Fusion	Breast	FRAS1--DCK	HLA-B58:01	GTYNVSEKWW	0.9993	0.913	0.458	29.4	0.1922	NA	1/787	1/4234
Fusion	Breast	FRAS1--DCK	HLA-B58:01	GTYNVSEKW	0.9994	0.8549	0.0045	9.1	0.0473	NA	1/787	1/4234
Fusion	Breast	FRAS1--DCK	HLA-C12:03	AASPGTYNV	0.9886	0.9847	0.4213	134.1	0.587	NA	1/787	1/4234
Fusion	Breast	ANKRD50--ATP2B1	HLA-B44:03	AEAFKSLWRSF	0.9989	0.9783	0.2653	52.3	0.0582	NA	1/787	1/4234
Fusion	Breast	ANKRD50--ATP2B1	HLA-B44:03	AEAFKSLW	0.9998	0.9534	0.23	90.5	0.106	NA	1/787	1/4234
Fusion	Breast	PLEKHA5--GPC6	HLA-C07:02	RYYIKCNAL	0.5037	0.9205	0.0919	99.7	0.0544	NA	1/787	1/4234
Fusion	Breast	PLEKHM1--GAA	HLA-B44:03	QELNTTVAPL	0.925	0.9893	1.5385	293.3	0.2954	NA	1/787	1/4234
Fusion	Breast	PLEKHM1--GAA	HLA-B44:03	QELNTTVAPLF	0.9985	0.9795	0.2868	138.8	0.1615	NA	1/787	1/4234
Fusion	Breast	PZP--CPNE4	HLA-C16:01	SSVDRTEVI	0.7149	0.9265	0.4347	113.4	0.3879	NA	1/787	1/4234
Fusion	Breast	TOP1--PZP	HLA-C16:01	HSNRQYMVL	0.9766	0.9862	0.1734	45.6	0.1406	NA	1/787	1/4234
Fusion	Breast	YWHAE--TLCD2	HLA-B44:03	AEQAERYDGY	0.9987	0.7169	0.241	78.1	0.0927	NA	1/787	1/4234
Fusion	Breast	SCML2--PPHLN1	HLA-B35:01	KIVMSTVAY	0.9212	0.8397	1.1987	165.3	0.4366	NA	1/787	1/4234
Fusion	Breast	PHF12--ANO1	HLA-C07:01	LRALAAFVI	0.9954	0.7709	1.063	494.6	0.1686	NA	1/787	1/4234
Fusion	Breast	MAP2K3--NKAIN3	HLA-B35:01	MPQSKGLSI	0.9645	0.9343	0.0452	285.3	0.6234	NA	1/787	1/4234
Fusion	Breast	BPTF--NPEPPS	HLA-A02:01	IMLSSRVTQL	0.9771	0.7317	0.9455	184.7	1.5656	NA	1/787	1/4234
Fusion	Breast	BPTF--NPEPPS	HLA-A02:01	MLSSRVTQLL	0.9504	0.6632	0.7494	67.6	0.8068	NA	1/787	1/4234
Fusion	Breast	BPTF--NPEPPS	HLA-A02:01	FLNRRLIML	0.9817	0.5354	0.0822	9.6	0.1121	NA	1/787	1/4234
Fusion	Breast	BPTF--NPEPPS	HLA-A02:01	MLSSRVTQL	0.9887	0.6505	0.0299	61	0.7432	NA	1/787	1/4234
Fusion	Breast	BPTF--NPEPPS	HLA-A02:01	RLIMLSSRV	0.9824	0.5791	0.3445	84.9	0.949	NA	1/787	1/4234
Fusion	Breast	BPTF--NPEPPS	HLA-C07:01	SRVTQLLQL	0.9997	0.5774	0.1182	152.8	0.0596	NA	1/787	1/4234
Fusion	Breast	BPTF--NPEPPS	HLA-C12:03	FLNRRLIML	0.9568	0.9887	0.5077	262.6	0.9901	NA	1/787	1/4234
Fusion	Breast	BPTF--NPEPPS	HLA-C12:03	LSSRVTQLL	0.9853	0.9246	0.3398	156.3	0.6689	NA	1/787	1/4234
Fusion	Breast	BPTF--NPEPPS	HLA-C12:03	LSVPSSSVV	0.9457	0.9831	0.7058	51.7	0.2296	NA	1/787	1/4234
Fusion	Breast	BPTF--NPEPPS	HLA-C12:03	MLSSRVTQL	0.9989	0.9594	0.1609	159.6	0.68	NA	1/787	1/4234
Fusion	Breast	DPYD--EDIL3	HLA-B15:01	LQVPALLIH	0.996	0.5274	0.6854	268.6	1.1392	NA	1/787	1/4234
Fusion	Breast	DPYD--EDIL3	HLA-C12:03	ASVLQVPAL	0.9928	0.9878	0.3461	187.1	0.7803	NA	1/787	1/4234
Fusion	Breast	DPYD--EDIL3	HLA-C12:03	SVLQVPALL	0.6679	0.9789	0.5279	164.6	0.6967	NA	1/787	1/4234
Fusion	Breast	NBEAL1--TANK	HLA-A02:01	SLWVRRQEV	0.9221	0.7401	0.1855	117.8	1.1758	NA	1/787	1/4234
Fusion	Breast	STK39--ITGB6	HLA-C12:03	LSVHDSQEL	0.949	0.9286	0.6212	312.3	1.12	NA	1/787	1/4234
Fusion	Breast	LRP5--ZNF507	HLA-A02:01	ALCVGMCVAI	0.9735	0.6024	1.2301	167.6	1.477	NA	1/787	1/4234
Fusion	Breast	LRP5--ZNF507	HLA-A02:01	LLTCGDALCV	0.9563	0.6058	1.4863	270.6	1.9925	NA	1/787	1/4234
Fusion	Breast	MBOAT1--HBS1L	HLA-C12:03	KMMISTASL	0.9907	0.993	1.5343	141.5	0.6157	NA	1/787	1/4234
Fusion	Breast	AP5Z1--SGCA	HLA-A24:02	LWSPSWCPCW	0.9804	0.8822	0.8771	369.3	0.5478	NA	1/787	1/4234
Fusion	Breast	AP5Z1--SGCA	HLA-A24:02	SWCPCWWPCF	0.9798	0.7278	0.5435	36.2	0.0785	NA	1/787	1/4234
Fusion	Breast	AP5Z1--SGCA	HLA-A24:02	SWWMLWSPSW	0.9803	0.8381	1.1369	75.2	0.1646	NA	1/787	1/4234
Fusion	Breast	AP5Z1--SGCA	HLA-B07:02	HPLRPQTVTS	0.9116	0.5113	1.7612	432.9	0.7658	NA	1/787	1/4234
Fusion	Breast	AP5Z1--SGCA	HLA-B07:02	RPQTVTSWWM	0.9639	0.7626	1.5795	29.6	0.1071	NA	1/787	1/4234
Fusion	Breast	AP5Z1--SGCA	HLA-B07:02	RPQTVTSWWML	0.9967	0.8216	1.1987	66.5	0.2153	NA	1/787	1/4234
Fusion	Breast	AP5Z1--SGCA	HLA-A24:02	WWMLWSPSW	0.9838	0.7236	0.8004	46.7	0.1056	NA	1/787	1/4234
Fusion	Breast	AP5Z1--SGCA	HLA-B07:02	HPLRPQTVT	0.9626	0.5891	0.6655	394.1	0.7268	NA	1/787	1/4234
Fusion	Breast	ALG8--OXA1L	HLA-A30:01	KVQAPPVVAA	0.9665	0.9621	1.7204	339.7	1.4945	NA	1/787	1/4234
Fusion	Breast	ALG8--OXA1L	HLA-A30:01	KVQAPPVVA	0.905	0.9503	0.6352	99.4	0.496	NA	1/787	1/4234
Fusion	Breast	KAT6A--ADAM2	HLA-B57:03	KSFQWCEDL	0.8466	0.9872	0.3199	329.8	0.5776	NA	1/787	1/4234
Fusion	Breast	MED13L--DGKH	HLA-B57:03	RAAVPYPPNI	0.9553	0.9776	1.6327	377.1	0.6409	NA	1/787	1/4234
Fusion	Breast	GRIK2--ARMC2	HLA-A24:02	RFGFSRPCCF	0.9688	0.7936	1.211	353.3	0.5337	NA	1/787	1/4234
Fusion	Breast	GRIK2--ARMC2	HLA-A32:01	TTHVLRFGF	0.9625	0.7582	0.458	172.7	0.3075	NA	1/787	1/4234
Fusion	Breast	GRIK2--ARMC2	HLA-B08:01	FGFSRPCCF	0.8731	0.7688	0.557	416.8	0.6585	NA	1/787	1/4234
Fusion	Breast	GRIK2--ARMC2	HLA-C07:02	FGFSRPCCF	0.533	0.9653	0.3398	421.3	0.2769	NA	1/787	1/4234
Fusion	Breast	BPTF--CCDC40	HLA-A30:01	RVLRPGGVRL	0.9493	0.9381	0.2793	76.6	0.3859	NA	1/787	1/4234
Fusion	Breast	BPTF--CCDC40	HLA-A30:01	RIHRGAPGA	0.9817	0.9276	1.3108	32.4	0.1656	NA	1/787	1/4234
Fusion	Breast	BPTF--CCDC40	HLA-A30:01	RVLRPGGVR	0.9782	0.9234	0.1149	308.5	1.3798	NA	1/787	1/4234
Fusion	Breast	TSPAN15--VPS26A	HLA-C16:01	TVFWVNLAF	0.618	0.9844	0.7226	151.9	0.5178	NA	1/787	1/4234
Fusion	Breast	TSPAN15--VPS26A	HLA-C16:01	YSTVFWVNL	0.9298	0.9881	0.7473	181.4	0.6062	NA	1/787	1/4234
Fusion	Breast	DUS2--UNC5C	HLA-A02:01	IVYCEVEWL	0.9443	0.7477	1.3344	244.1	1.8699	NA	1/787	1/4234
Fusion	Breast	RPS8--C1orf228	HLA-A02:01	FQQGKLLAI	0.965	0.6793	0.1435	58.6	0.7172	NA	1/787	1/4234
Fusion	Breast	WASHC2A--ASAH2	HLA-A02:01	NLTPGIQTL	0.8567	0.7716	0.4134	247.7	1.8882	NA	1/787	1/4234
Fusion	Breast	CPE--SMIM14	HLA-C03:04	VSSGITGTL	0.9988	0.9863	0.3822	59.1	0.2437	NA	1/787	1/4234
Fusion	Breast	NCALD--SYBU	HLA-A02:01	VLAASQCLL	0.9566	0.598	0.766	121.2	1.1974	NA	1/787	1/4234
Fusion	Breast	NCALD--SYBU	HLA-C03:04	IVQMTQAVL	0.9959	0.9897	1.1	104.8	0.374	NA	1/787	1/4234
Fusion	Breast	RNF170--HOOK3	HLA-B15:01	ALFRSRHLM	0.7454	0.7719	1.5295	399.4	1.4868	NA	1/787	1/4234
Fusion	Breast	RNF170--HOOK3	HLA-C03:04	YALFRSRHL	0.9992	0.9783	0.1547	21	0.0898	NA	1/787	1/4234
Fusion	Breast	PSME3--GPR37L1	HLA-C02:02	YVSSLGVTTF	0.9884	0.9061	0.4646	496.9	0.3482	NA	1/787	1/4234
Fusion	Breast	PCCA--CLYBL	HLA-C12:03	IAREIGKRL	0.6192	0.9839	0.3987	142.6	0.6196	NA	1/787	1/4234
Fusion	Breast	NF1--RAB11FIP4	HLA-B35:01	MASSSPGNPAF	0.9927	0.9198	0.7304	157.4	0.4225	NA	1/787	2/4234
Fusion	Breast	NF1--RAB11FIP4	HLA-A32:01	RSQAPPLLM	0.9607	0.9274	0.5583	416	0.6521	NA	1/787	1/4234
Fusion	Breast	NF1--RAB11FIP4	HLA-B35:01	SSSPGNPAF	0.9626	0.8237	0.3495	178.2	0.4582	NA	1/787	2/4234
Fusion	Breast	NF1--RAB11FIP4	HLA-C02:02	RSQAPPLLM	0.9272	0.9864	0.3028	225.2	0.1272	NA	1/787	1/4234
Fusion	Breast	YME1L1--SLC35D2	HLA-A02:01	ELFPLPLLYV	0.9773	0.5352	0.0452	28	0.3792	NA	1/787	1/4234
Fusion	Breast	ARHGAP24--NOA1	HLA-A02:01	FLFEVVPGTTL	0.9985	0.5904	0.0201	9.7	0.1133	NA	1/787	1/4234
Fusion	Breast	ANO6--IAPP	HLA-C16:01	RGFKERATEL	0.9844	0.9631	1.6471	483.6	1.3454	NA	1/787	1/4234
Fusion	Breast	ANO6--IAPP	HLA-B45:01	AEMQHCHMCNA	0.9968	0.9716	0.6818	90.4	0.102	NA	1/787	1/4234
Fusion	Breast	ANO6--IAPP	HLA-B42:01	APGKFFSSF	0.8072	0.719	0.0344	19.7	0.0917	NA	1/787	1/4234
Fusion	Breast	ANO6--IAPP	HLA-B45:01	AEMQHCHMC	0.9692	0.9446	0.7058	134.4	0.1446	NA	1/787	1/4234
Fusion	Breast	ANO6--IAPP	HLA-B45:01	KERATELLA	0.9841	0.7204	0.3639	177.4	0.1817	NA	1/787	1/4234
Fusion	Breast	ANO6--IAPP	HLA-C16:01	FFSSFQQQL	0.8836	0.9678	0.4409	249.7	0.8073	NA	1/787	1/4234
Fusion	Breast	ANO6--IAPP	HLA-C16:01	RATELLAPL	0.998	0.9886	0.4061	16.9	0.0348	NA	1/787	1/4234
Fusion	Breast	MDH2--PAWR	HLA-B45:01	AELKHNQCL	0.9284	0.8741	0.2151	478.9	0.4311	NA	1/787	1/4234
Fusion	Breast	SNF8--PROCA1	HLA-A02:01	VLAEDQLAQV	0.9991	0.8398	0.1656	16.7	0.2123	NA	1/787	1/4234
Fusion	Breast	SNF8--PROCA1	HLA-B15:03	LTVSATACTY	0.8176	0.7558	1.6372	133	1.7008	NA	1/787	1/4234
Fusion	Breast	SNF8--PROCA1	HLA-B45:01	AEDQLAQVTA	0.995	0.9941	0.0214	23.6	0.0144	NA	1/787	1/4234
Fusion	Breast	SNF8--PROCA1	HLA-A02:01	TLSPLTVSA	0.9888	0.5701	0.1086	89.9	0.9886	NA	1/787	1/4234
Fusion	Breast	SNF8--PROCA1	HLA-A02:01	YTLSTTATV	0.9856	0.5249	0.2352	34	0.4518	NA	1/787	1/4234
Fusion	Breast	SNF8--PROCA1	HLA-B45:01	AEDQLAQVT	0.9694	0.9905	0.4825	201	0.2043	NA	1/787	1/4234
Fusion	Breast	SNF8--PROCA1	HLA-C02:10	YTLSTTATV	0.7273	0.9399	0.719	91.3	0.0345	NA	1/787	1/4234
Fusion	Breast	SNF8--PROCA1	HLA-C16:01	AAGDTSSAL	0.6385	0.9892	0.4845	171.7	0.5783	NA	1/787	1/4234
Fusion	Breast	SNF8--PROCA1	HLA-C16:01	GTSSTLSPL	0.7919	0.9873	1.5753	330.8	1.0122	NA	1/787	1/4234
Fusion	Breast	SNF8--PROCA1	HLA-C16:01	LAQVTARSL	0.8892	0.968	0.1132	56.6	0.1885	NA	1/787	1/4234
Fusion	Breast	SNF8--PROCA1	HLA-C16:01	LSTTATVIL	0.7891	0.9613	0.6212	114.1	0.3899	NA	1/787	1/4234
Fusion	Breast	SNF8--PROCA1	HLA-C16:01	SALGTSSTL	0.9069	0.9921	0.241	24.7	0.0608	NA	1/787	1/4234
Fusion	Breast	SNF8--PROCA1	HLA-C16:01	SATACTYTL	0.8346	0.961	0.3107	37.1	0.1086	NA	1/787	1/4234
Fusion	Breast	SNF8--PROCA1	HLA-C16:01	SSTLSPLTV	0.749	0.9848	0.4769	200.1	0.6624	NA	1/787	1/4234
Fusion	Breast	SNF8--PROCA1	HLA-C16:01	YTLSTTATV	0.8491	0.9622	0.6392	29.8	0.0806	NA	1/787	1/4234
Fusion	Breast	EFNA4--FLAD1	HLA-A02:01	HLLSVPDTAL	0.9232	0.6949	0.3137	261.5	1.9525	NA	1/787	1/4234
Fusion	Breast	EFNA4--FLAD1	HLA-B07:05	LPRGPGLPSL	0.9998	0.5568	0.0131	3.4	0.0072	NA	1/787	1/4234
Fusion	Breast	EFNA4--FLAD1	HLA-C15:05	RTHSGHQHL	0.9988	0.9544	0.4277	321.2	0.2077	NA	1/787	1/4234
Fusion	Breast	NOMO1--MYH11	HLA-A02:01	TTYSGLFCVV	0.9308	0.7429	0.5296	126.2	1.2292	NA	1/787	1/4234
Fusion	Breast	NOMO1--MYH11	HLA-B15:01	ITLIFNPTTY	0.9961	0.8287	1.0924	109.1	0.565	NA	1/787	1/4234
Fusion	Breast	NOMO1--MYH11	HLA-B15:01	LIFNPTTY	0.999	0.8902	0.8991	467.9	1.6247	NA	1/787	1/4234
Fusion	Breast	NOMO1--MYH11	HLA-A02:01	TTYSGLFCV	0.9479	0.7623	0.193	21.8	0.2978	NA	1/787	1/4234
Fusion	Breast	NOMO1--MYH11	HLA-B15:01	TLIFNPTTY	0.9983	0.871	0.0495	89.8	0.4783	NA	1/787	1/4234
Fusion	Breast	NOMO1--MYH11	HLA-C15:05	TTYSGLFCV	0.9986	0.9568	0.3461	275.8	0.1756	NA	1/787	1/4234
Fusion	Breast	PSMD5--C5	HLA-B15:01	KQVLQKTDIF	0.9986	0.5407	0.4311	94.6	0.5006	NA	1/787	1/4234
Fusion	Breast	DSCR3--IGSF5	HLA-B15:03	YHAGVLGLVM	0.9871	0.911	1.3	55	0.9359	NA	1/787	1/4234
Fusion	Breast	DSCR3--IGSF5	HLA-B15:03	HAGVLGLVM	0.9459	0.8832	1.1394	96.6	1.3884	NA	1/787	1/4234
Fusion	Breast	WWP1--CPB2	HLA-B15:03	RSHTCGQVL	0.8808	0.8465	1.2301	66.2	1.0883	NA	1/787	1/4234
Fusion	Breast	HM13--CPQ	HLA-B27:05	ARGKALQQKF	0.9998	0.6142	0.4845	454.6	1.1599	NA	1/787	1/4234
Fusion	Breast	ATP11B--MED10	HLA-C12:03	ISSKKFKSL	0.9766	0.9692	0.361	261.8	0.9883	NA	1/787	1/4234
Fusion	Breast	TCF7L1--WIF1	HLA-C12:03	RTAEYFYEF	0.9294	0.9831	0.0154	86.2	0.393	NA	1/787	1/4234
Fusion	Breast	PNN--EIF3M	HLA-B15:01	LLRCIVRAL	0.9682	0.7972	1.3493	214.6	0.9636	NA	1/787	1/4234
Fusion	Breast	FGFR1--ADAM18	HLA-B35:01	LPEQDDLHHY	0.996	0.7604	0.033	221.9	0.5284	NA	1/787	1/4234
Fusion	Breast	RNF121--SF1	HLA-B58:01	RGAAGTKTQW	0.995	0.8873	0.3717	22.1	0.1469	NA	1/787	1/4234
Fusion	Breast	RNF121--SF1	HLA-B58:01	GAAGTKTQW	0.997	0.9275	0.1285	38.5	0.2372	NA	1/787	1/4234
Fusion	Breast	MON2--PIP4K2C	HLA-C03:03	TSIGLLVSL	0.9998	0.9833	0.2825	47.3	0.2003	NA	1/787	1/4234
Fusion	Breast	NAPA--PPP5D1	HLA-A02:01	SFFSGLFGI	0.5941	0.5415	0.8127	247.8	1.8888	NA	1/787	1/4234
Fusion	Breast	PXDNL--ATP6V1H	HLA-A02:01	VLILTKLLEV	0.9922	0.6837	0.5419	27	0.3674	NA	1/787	1/4234
Fusion	Breast	PXDNL--ATP6V1H	HLA-A02:01	LILTKLLEV	0.9962	0.5792	0.0282	17.5	0.2295	NA	1/787	1/4234
Fusion	Breast	QRSL1--ATG5	HLA-C03:03	FAMGHYPIGL	0.9998	0.9907	0.1775	20.5	0.0877	NA	1/787	1/4234
Fusion	Breast	QRSL1--ATG5	HLA-C03:03	FAMGHYPIGLL	0.9999	0.9898	0.793	207	0.576	NA	1/787	1/4234
Fusion	Breast	QRSL1--ATG5	HLA-B18:01	DEFAMGHY	0.9998	0.9162	0.0109	37.3	0.026	NA	1/787	1/4234
Fusion	Breast	QRSL1--ATG5	HLA-C03:03	FAMGHYPI	0.9997	0.9878	1.9476	44.6	0.1927	NA	1/787	1/4234
Fusion	Breast	QRSL1--ATG5	HLA-B18:01	DEFAMGHYP	0.9655	0.9597	0.4196	429.2	0.2655	NA	1/787	1/4234
Fusion	Breast	QRSL1--ATG5	HLA-C03:03	MGHYPIGLL	0.9938	0.9831	0.8884	205.5	0.5733	NA	1/787	1/4234
Fusion	Breast	RAD51B--DCAF5	HLA-A03:01	AGFCYGTWNK	0.988	0.6849	1.1532	227.2	0.7045	NA	1/787	1/4234
Fusion	Breast	NF1--ACACA	HLA-C07:01	SRFDEQIGM	0.9988	0.8065	0.0523	182.4	0.0696	NA	1/787	1/4234
Fusion	Breast	UBE2O--RNF213	HLA-B08:01	SALGKRSL	0.9994	0.6389	0.9059	145.2	0.2598	NA	1/787	1/4234
Fusion	Breast	MGST1--IPO8	HLA-B35:01	MVDLTQYAL	0.9148	0.9416	1.5485	111.1	0.3417	NA	1/787	1/4234
Fusion	Breast	MGST1--IPO8	HLA-C12:03	MVDLTQYAL	0.9411	0.9807	1.1738	439.1	1.4222	NA	1/787	1/4234
Fusion	Breast	MGST1--IPO8	HLA-C12:03	TQYALPLQL	0.9752	0.9912	0.057	110.2	0.4876	NA	1/787	1/4234
Fusion	Breast	PIP5K1C--C3	HLA-A02:01	VLYHHPQHL	0.9943	0.6911	0.0073	30.8	0.4121	NA	1/787	1/4234
Fusion	Breast	PIP5K1C--C3	HLA-C12:03	KALVHDGVL	0.7311	0.9442	0.7399	467.9	1.483	NA	1/787	1/4234
Fusion	Breast	PIP5K1C--C3	HLA-C12:03	VLYHHPQHL	0.9963	0.9674	0.0427	133.8	0.5857	NA	1/787	1/4234
Fusion	Breast	PIGN--CTNNA2	HLA-A02:06	YLLLSTGWTV	0.9946	0.7936	0.2089	7.9	0.0732	NA	1/787	1/4234
Fusion	Breast	PIGN--CTNNA2	HLA-A02:06	LLLSTGWTV	0.9934	0.7455	0.1775	7.3	0.0635	NA	1/787	1/4234
Fusion	Breast	PIGN--CTNNA2	HLA-B27:05	HRLSRQLKT	0.9975	0.8295	1.1307	414.1	1.0809	NA	1/787	1/4234
Fusion	Breast	BCAS3--WIPI1	HLA-A02:01	SLYQPFQFL	0.9827	0.7143	0.0558	44.1	0.5669	NA	1/787	1/4234
Fusion	Breast	CEP112--OTOA	HLA-B44:03	KEALFLYELL	0.9666	0.966	0.8698	390.5	0.3665	NA	1/787	1/4234
Fusion	Breast	CEP112--OTOA	HLA-B44:03	KEALFLYEL	0.9884	0.9598	0.1688	162.5	0.1835	NA	1/787	1/4234
Fusion	Breast	CEP112--OTOA	HLA-B44:03	REKEALFLY	0.9988	0.9753	0.1354	80.6	0.0954	NA	1/787	1/4234
Fusion	Breast	MTF2--RPL5	HLA-A02:01	KLLRIRPTL	0.8998	0.6674	0.1775	105.6	1.0935	NA	1/787	1/4234
Fusion	Breast	PTPRK--HECA	HLA-B44:03	AEAPCATPLI	0.9744	0.8951	0.5058	86.9	0.102	NA	1/787	1/4234
Fusion	Breast	PTPRK--HECA	HLA-B44:03	AEAPCATPL	0.9258	0.9425	0.1947	93.8	0.1094	NA	1/787	1/4234
Fusion	Breast	SEMA4C--AFF3	HLA-B44:03	SENGSPRSL	0.9952	0.9674	0.0919	262.7	0.2694	NA	1/787	1/4234
Fusion	Breast	SKAP1--BCAS3	HLA-A02:01	FLSDYQDEGA	0.9628	0.6096	0.9971	100.9	1.064	NA	1/787	1/4234
Fusion	Breast	SRGAP1--TMEM5	HLA-B44:03	KEQSTLESEEW	0.9998	0.9809	0.167	360.7	0.3467	NA	1/787	1/4234
Fusion	Breast	FAM160B2--DMTN	HLA-B38:01	GHAPRLWLL	0.9966	0.9741	0.0734	251.2	0.0391	NA	1/787	1/4234
Fusion	Breast	FAM160B2--DMTN	HLA-C12:03	ISSSSHPSF	0.8014	0.9823	0.2428	150.6	0.649	NA	1/787	1/4234
Fusion	Breast	FAM160B2--DMTN	HLA-C12:03	SSSSHPSFL	0.933	0.9902	0.463	104.2	0.4656	NA	1/787	1/4234
Fusion	Breast	FAM160B2--DMTN	HLA-C14:02	ISSSSHPSF	0.7772	0.9666	1.0116	390.6	1.0887	NA	1/787	1/4234
Fusion	Breast	PKP2--DNM1L	HLA-B38:01	SHSATGPCF	0.9359	0.9911	0.0315	388.6	0.0638	NA	1/787	1/4234
Fusion	Breast	LRPPRC--EIF4G2	HLA-A02:01	FLCTSMTWKL	0.9894	0.5687	0.4456	15.5	0.1916	NA	1/787	1/4234
Fusion	Breast	LRPPRC--EIF4G2	HLA-B15:01	KQGKACYFAF	0.9981	0.7572	1.2529	31.8	0.1471	NA	1/787	1/4234
Fusion	Breast	LRPPRC--EIF4G2	HLA-C03:03	FAFLCTSM	0.9999	0.9937	0.3822	101.2	0.3658	NA	1/787	1/4234
Fusion	Breast	ZNRF1--BCAS4	HLA-B07:02	APQAGRVL	0.9997	0.6313	0.033	21.6	0.0759	NA	1/787	1/4234
Fusion	Breast	ZNRF1--BCAS4	HLA-C03:03	HAPQAGRVL	0.9956	0.9874	0.0618	137.4	0.4442	NA	1/787	1/4234
Fusion	Breast	BRWD1--ABCG1	HLA-B15:01	TSLQNASSY	0.9906	0.876	0.6535	292.9	1.2144	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	AVLNSLVASV	0.9951	0.6392	0.458	48.8	0.6168	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	FLPSMKMQKV	0.9809	0.7233	0.3753	63.2	0.7653	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	GLLAESTWAL	0.9933	0.6618	0.3753	7.8	0.0803	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	ILDGLLHWMV	0.9946	0.706	0.3956	15.7	0.194	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	LLYDDSTVAT	0.9734	0.5706	0.5491	189	1.5874	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	NLISFLEDGV	0.9883	0.5821	0.9103	24.2	0.332	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	NLMHMQPPPL	0.9735	0.7624	0.9405	142.2	1.3297	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	QLSGFLELLV	0.985	0.75	0.7683	33.1	0.4413	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	RLLDISISAV	0.9993	0.5144	0.0073	9.2	0.1064	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	RLVLETLCKL	0.9237	0.6241	1.1056	100.3	1.0603	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	SISAVLNSLV	0.9346	0.5033	1.1855	146.6	1.3593	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	SQLSGFLELL	0.9382	0.5757	0.6352	110.5	1.1265	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	VLILGKLILL	0.9754	0.5809	0.678	94.6	1.0223	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B13:02	AESTWALDTI	0.985	0.8152	1.5343	453.8	0.0705	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	AARNDMPYPY	0.9992	0.9382	1.9055	101.5	0.5323	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	AQYQQSQHNL	0.9988	0.8598	0.2684	308.7	1.2621	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	ASYDRRHEPY	0.9989	0.8009	0.8208	167.9	0.7981	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	AYSGVPSASY	0.9464	0.8538	0.704	445.6	1.5786	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	EMYNQYGGSY	0.999	0.8796	0.458	69.6	0.3739	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	ISGQLDLSAY	0.9974	0.6732	1.3306	258.9	1.1077	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	ISRAPSPASF	0.9997	0.7294	0.367	52.3	0.2676	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	KLWVDRYLTF	0.997	0.8283	0.8294	115.7	0.5917	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	KQYIQYLFAF	0.9979	0.7384	0.8884	13.1	0.0331	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	KSNYSRPPAY	0.9984	0.7607	1.473	220.8	0.9838	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	MQYSSQQQEM	0.9995	0.9247	0.4769	31.3	0.145	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	PMFSSQHPNY	0.9978	0.7379	1.9978	475.7	1.6425	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	QQSQHNLMHM	0.9996	0.9146	1.9129	123.5	0.6264	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	RMSPSKSPFL	0.9936	0.8148	1.6418	257.3	1.1025	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	RQQFPYGASY	0.9999	0.9209	0.0062	6.8	0.0092	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	SLMNTQAPPY	0.9992	0.8323	0.6273	20.5	0.0812	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	SQQQEMYNQY	0.9997	0.8705	0.3445	94.5	0.5002	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	SQSGAGGRPM	0.9979	0.8173	0.8378	68.3	0.3671	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	AQYQQSQHNLM	0.9998	0.8695	0.3769	326.3	1.312	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	GQGPPSGQPPY	0.9999	0.8864	0.4865	395.7	1.479	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	HQPDQYGQGSF	0.9998	0.8011	0.879	330.2	1.3222	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	LLYDDSTVATF	0.9999	0.7725	0.1255	74.1	0.3974	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	MQYSSQQQEMY	0.9999	0.8348	0.1448	32.9	0.154	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	NMWAARNDMPY	0.9993	0.8392	1.3273	267.6	1.1362	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	SMPDVMGRMPY	0.9998	0.8972	0.6875	77.7	0.417	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	SQSGAGGRPMF	0.9999	0.7844	0.451	324.7	1.3076	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	GQLDLSAY	0.9998	0.6865	0.4061	358.1	1.3929	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	GQRQQFPY	0.9997	0.7036	0.4078	178.1	0.8362	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	ALAARAIAV	0.9913	0.7397	0.0121	33.8	0.449	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	FLEDGVTMA	0.9871	0.7154	0.262	30.5	0.4076	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	FLLHEGRLL	0.9704	0.5155	0.3461	80.5	0.9123	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	GLLAESTWA	0.9631	0.6771	0.7533	192	1.6028	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	GMGPPMPTV	0.9965	0.7205	0.0226	17.8	0.2351	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	ILDGLLHWM	0.9816	0.6765	0.2841	18.8	0.2537	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	IVTPEAWRV	0.926	0.7991	0.704	252.9	1.9137	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	LILGKLILL	0.9846	0.5138	0.1898	76.8	0.8823	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	LLAESTWAL	0.9958	0.7175	0.0166	2.7	0.0082	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	LLYDDSTVA	0.979	0.5886	0.367	52.8	0.6589	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	LMHMQPPPL	0.967	0.7082	0.6392	154.6	1.4087	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	LVLETLCKL	0.949	0.5527	0.5619	236.8	1.8307	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	MMSPGESKL	0.9682	0.6811	0.3974	132.2	1.2667	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	NIVRSLSFV	0.8292	0.5054	0.8991	154.9	1.4107	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	QLSGFLELL	0.9857	0.6522	0.2239	49.6	0.6259	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	SISAVLNSL	0.9362	0.6363	0.3806	246.1	1.8801	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	SLAKRCICV	0.9447	0.7485	0.5637	122.1	1.2027	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	SQLSGFLEL	0.9724	0.6421	0.2428	67.3	0.8038	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-A02:01	VLNSLVASV	0.9971	0.6047	0.0121	13.2	0.1594	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B13:02	RELATNLNV	0.9896	0.6135	0.2653	414.8	0.0565	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	AQEAAAAVM	0.9843	0.9841	0.3941	143.4	0.7102	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	FQRSLENRM	0.9977	0.8458	0.3283	190.5	0.8804	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	GLMASSSPY	0.9992	0.8922	0.4061	7.5	0.0096	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	GLYPQQPNY	0.9988	0.8429	0.0962	194.6	0.8941	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	GSIGNLISF	0.9983	0.8367	0.5195	114.8	0.5879	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	IQGQYPYPY	0.9973	0.6435	0.5245	66.2	0.3558	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	ITRPPQPSY	0.9997	0.7889	0.0096	124.1	0.6289	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	KIVKKNNLF	0.8849	0.8858	0.6252	374.3	1.4309	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	LLAESTWAL	0.9675	0.9594	0.5723	251.3	1.0838	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	LMHMQPPPL	0.9771	0.9471	1.192	133.5	0.67	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	LMNTQAPPY	0.9987	0.7469	0.3822	22.4	0.0944	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	MMCRAAKAL	0.8658	0.9039	1.1	222.4	0.989	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	MSKHPGLVL	0.994	0.9216	0.2604	355.1	1.3855	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	NSAQSRPPY	0.9473	0.7786	0.8723	485.2	1.6638	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	NSMTPNAPY	0.9866	0.8075	0.5829	121	0.6149	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	QQFPYGASY	0.9998	0.962	0.0073	9.8	0.0174	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	QQQEMYNQY	0.9994	0.9315	0.1055	117.2	0.5975	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	RAAKALLAM	0.9914	0.8808	0.6655	59.4	0.3159	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	RMSPSKSPF	0.9991	0.8802	0.2778	11.8	0.025	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	SLKKQYIQY	0.9994	0.8689	0.0558	113.9	0.5846	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	SNIVRSLSF	0.9861	0.9221	0.4825	439.7	1.5675	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	SQLSGFLEL	0.9949	0.9128	0.3427	145.8	0.7194	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	STISVHDPF	0.9816	0.8129	1.004	43.8	0.2162	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	TQAPPYPGM	0.9969	0.9769	0.3542	328.2	1.3169	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	VMMSLKSGL	0.8485	0.9054	1.6929	464.6	1.6172	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	VQKGSIGNL	0.9973	0.7354	0.5128	284.6	1.1891	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	WAARNDMPY	0.9894	0.9806	1.3	55.3	0.2889	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	YQQSQHNLM	0.9978	0.8799	0.6173	111.3	0.574	NA	1/787	1/4234
Fusion	Breast	IGF1R--ARID1B	HLA-B15:01	YSGVPSASY	0.9921	0.8862	0.2367	64.3	0.3448	NA	1/787	1/4234
Fusion	Breast	IGF1R--PPP4R1	HLA-B15:01	VQAKIGVDDY	0.999	0.5803	0.2543	67.5	0.3631	NA	1/787	1/4234
Fusion	Breast	MFGE8--IGF1R	HLA-A02:01	ELLGCELNV	0.881	0.7553	1.2828	206.8	1.6817	NA	1/787	1/4234
Fusion	Breast	NUP50--CDK5RAP1	HLA-B15:01	KVAFDHLSQF	0.9998	0.8703	1.0192	70.7	0.3799	NA	1/787	1/4234
Fusion	Breast	NUP50--CDK5RAP1	HLA-B15:01	VAFDHLSQF	0.9992	0.8701	0.1227	75.1	0.4027	NA	1/787	1/4234
Fusion	Breast	VRK2--CHSY1	HLA-B15:01	GLIYLDAAAF	0.9985	0.8898	1.566	42.1	0.2058	NA	1/787	1/4234
Fusion	Breast	VRK2--CHSY1	HLA-A02:01	YLDAAAFL	0.9942	0.66	0.4232	60.1	0.7338	NA	1/787	1/4234
Fusion	Breast	VRK2--CHSY1	HLA-B15:01	LIYLDAAAF	0.9968	0.8821	0.4967	23.4	0.0998	NA	1/787	1/4234
Fusion	Breast	ACAP2--XXYLT1	HLA-B41:02	QEMINFHTAHI	0.9716	0.5535	0.9226	111.2	0.4104	NA	1/787	1/4234
Fusion	Breast	ACAP2--XXYLT1	HLA-C07:02	FHTAHILAV	0.6734	0.9327	0.1212	291	0.1915	NA	1/787	1/4234
Fusion	Breast	NCAPG2--N4BP2	HLA-A02:01	FLQFVQLDNL	0.9838	0.6868	0.7967	38.4	0.4999	NA	1/787	1/4234
Fusion	Breast	ACOT11--C8B	HLA-C07:02	IRINLFTNSF	0.9967	0.7532	0.5144	467.5	0.305	NA	1/787	1/4234
Fusion	Breast	ACOT11--C8B	HLA-C12:03	RINLFTNSF	0.9057	0.9863	0.1132	201.4	0.8279	NA	1/787	1/4234
Fusion	Breast	DNMT1--KLF1	HLA-A03:01	RTWARVLLTPR	0.9827	0.6384	0.6875	210.7	0.6684	NA	1/787	1/4234
Fusion	Breast	DNMT1--KLF1	HLA-B07:02	APKRRRTWA	0.9888	0.7051	1.516	269.3	0.5767	NA	1/787	1/4234
Fusion	Breast	DNMT1--KLF1	HLA-B39:01	RRTWARVLL	0.9182	0.9234	1.3454	308.1	0.3267	NA	1/787	1/4234
Fusion	Breast	DNMT1--KLF1	HLA-C07:02	RRRTWARVL	0.8249	0.9724	0.5264	102.3	0.0558	NA	1/787	1/4234
Fusion	Breast	DNMT1--KLF1	HLA-C07:02	RRTWARVLL	0.9806	0.9703	0.2428	95.6	0.0523	NA	1/787	1/4234
Fusion	Breast	PEF1--OSBPL9	HLA-C07:02	YRQGLDSGF	0.8231	0.9254	0.5365	355.8	0.2355	NA	1/787	1/4234
Fusion	Breast	PEF1--OSBPL9	HLA-C12:03	ASYPYRQGL	0.9896	0.9372	0.1055	28	0.1109	NA	1/787	1/4234
Fusion	Breast	SCMH1--PPT1	HLA-C07:02	YRRGPSSVV	0.5842	0.9477	0.6996	277.8	0.1825	NA	1/787	1/4234
Fusion	Breast	ASCC1--MICU1	HLA-B58:01	LAKCSMGLTF	0.9595	0.8072	1.7612	204.7	0.7903	NA	1/787	1/4234
Fusion	Breast	ASCC1--MICU1	HLA-C03:02	LAKCSMGLTF	0.9989	0.9461	1.2529	285.9	0.9982	NA	1/787	1/4234
Fusion	Breast	CABLES1--RBBP8	HLA-B58:01	RSRETSLQNF	0.9959	0.9269	0.6572	172.6	0.6933	NA	1/787	1/4234
Fusion	Breast	MAST2--MMEL1	HLA-B35:01	HALLAGCASY	0.9856	0.8568	0.3332	47.9	0.1856	NA	1/787	1/4234
Fusion	Breast	MAST2--MMEL1	HLA-C03:02	HALLAGCASY	0.9688	0.9814	0.5534	320	1.0866	NA	1/787	1/4234
Fusion	Breast	PRKDC--ARHGAP23	HLA-B08:01	AAYLRTPAV	0.9987	0.733	0.1227	132.2	0.2368	NA	1/787	1/4234
Fusion	Breast	RIPK1--BCKDHB	HLA-C07:01	RRLCIGNQL	0.9978	0.71	0.1807	373	0.1322	NA	1/787	1/4234
Fusion	Breast	RIPK1--BCKDHB	HLA-C07:02	RRLCIGNQL	0.8856	0.9638	0.2636	272.2	0.1784	NA	1/787	1/4234
Fusion	Breast	HDAC5--MSR1	HLA-A02:01	AQAAPFTKV	0.9833	0.7279	0.0177	169.9	1.4883	NA	1/787	1/4234
Fusion	Breast	MICAL1--AK9	HLA-B44:03	LEVLAERNSW	0.9988	0.9729	0.0835	71	0.0845	NA	1/787	1/4234
Fusion	Breast	OSTM1--CEP85L	HLA-B38:01	FHLTIEITI	0.9986	0.887	0.2428	96.1	0.0147	NA	1/787	1/4234
Fusion	Breast	OSTM1--CEP85L	HLA-C12:03	IIHQHGYLL	0.9778	0.9842	0.6594	152.1	0.6543	NA	1/787	1/4234
Fusion	Breast	OSTM1--CEP85L	HLA-C12:03	ISRAAGAQI	0.838	0.9867	0.7415	153.9	0.6605	NA	1/787	1/4234
Fusion	Breast	TLK2--SIGLEC9	HLA-A02:01	YIPWTGFRV	0.9806	0.6296	0.2856	71.6	0.8413	NA	1/787	1/4234
Fusion	Breast	TLK2--SIGLEC9	HLA-B44:03	LESFYWISY	0.9792	0.875	0.5128	62.3	0.0693	NA	1/787	1/4234
Fusion	Breast	TLK2--SIGLEC9	HLA-C12:03	ESFYWISYI	0.5442	0.9715	1.0757	93.6	0.4234	NA	1/787	1/4234
Fusion	Breast	TLK2--SIGLEC9	HLA-C12:03	ISYIPWTGF	0.894	0.9835	0.2138	120.1	0.5288	NA	1/787	1/4234
Fusion	Breast	ADCY9--GLYR1	HLA-A25:01	EVIVSRGGRF	0.9921	0.8069	0.0383	461.8	0.0452	NA	1/787	1/4234
Fusion	Breast	ADCY9--GLYR1	HLA-C02:02	FQAMGKTSFF	0.9974	0.9841	0.6137	281.4	0.162	NA	1/787	1/4234
Fusion	Breast	ADCY9--GLYR1	HLA-B40:02	AEGLTLAQV	0.9985	0.6661	0.0861	126.6	0.4811	NA	1/787	1/4234
Fusion	Breast	ADCY9--GLYR1	HLA-C02:02	FMATIAEGL	0.5065	0.993	0.1963	233.3	0.1321	NA	1/787	1/4234
Fusion	Breast	ADCY9--GLYR1	HLA-C02:02	MSAVYRAYI	0.5973	0.9594	1.5385	191.1	0.104	NA	1/787	1/4234
Fusion	Breast	ADCY9--GLYR1	HLA-C07:02	FKPDFYLKY	0.8715	0.8973	0.0096	433.8	0.2843	NA	1/787	1/4234
Fusion	Breast	ADCY9--GLYR1	HLA-C07:02	KYIQKDLRL	0.5949	0.9347	0.0523	233.2	0.1532	NA	1/787	1/4234
Fusion	Breast	ITGA6--MAP3K20	HLA-C02:02	TQAEILSVL	0.8442	0.9106	0.2253	406.2	0.2678	NA	1/787	1/4234
Fusion	Breast	MCU--NFIX	HLA-C07:02	HRTDEFHPF	0.9524	0.9701	0.388	373.5	0.2465	NA	1/787	1/4234
Fusion	Breast	ANO1--UNC5D	HLA-C03:04	IGTDNGEAL	0.9973	0.9899	0.6616	301.6	0.7253	NA	1/787	1/4234
Fusion	Breast	CPB1--MGP	HLA-C03:04	FVREDPRTL	0.9929	0.9846	0.0344	26	0.1143	NA	1/787	1/4234
Fusion	Breast	CWC25--MED24	HLA-C03:04	GAVNWPPPL	0.9976	0.987	0.4409	31.8	0.1444	NA	1/787	1/4234
Fusion	Breast	WIPF2--PSMD11	HLA-C03:04	RSFLGSDRL	0.9427	0.9851	0.3941	250.1	0.6486	NA	1/787	1/4234
Fusion	Breast	GPR157--GON4L	HLA-A03:01	RLLWAFHVVR	0.9713	0.5611	1.3596	187.1	0.6121	NA	1/787	1/4234
Fusion	Breast	PCDH15--DUSP13	HLA-B27:05	LRTPSWSLL	0.9993	0.7426	0.9297	181.2	0.5713	NA	1/787	1/4234
Fusion	Breast	PCDH15--DUSP13	HLA-C07:02	LRTPSWSLL	0.8637	0.9729	0.7767	126.3	0.0679	NA	1/787	1/4234
Fusion	Breast	RMDN1--AKAP6	HLA-A31:08	KQIRLAATQGW	0.9843	0.8171	0.9993	467.1	1.159	NA	1/787	1/4234
Fusion	Breast	BPTF--RGS9	HLA-C14:02	YWFLNRRLIM	0.7387	0.968	1.3729	66.1	0.2241	NA	1/787	1/4234
Fusion	Breast	MICU2--ATP8A2	HLA-A24:02	SFTVSAQLWF	0.9754	0.6505	1.8644	376.7	0.5541	NA	1/787	1/4234
Fusion	Breast	MICU2--ATP8A2	HLA-A24:02	SFTVSAQLW	0.9891	0.7452	0.4865	403.3	0.5759	NA	1/787	1/4234
Fusion	Breast	MICU2--ATP8A2	HLA-A24:02	VSAQLWFAF	0.9818	0.5535	1.3951	111.6	0.2303	NA	1/787	1/4234
Fusion	Breast	SDF2--MAP2K6	HLA-B44:03	EEFQRTAYI	0.9889	0.9485	0.1465	386.4	0.3639	NA	1/787	1/4234
Fusion	Breast	CLNS1A--GAB2	HLA-A25:01	YIAERSASF	0.9882	0.8959	0.1547	98.3	0.0097	NA	1/787	1/4234
Fusion	Breast	CLNS1A--GAB2	HLA-C02:02	YIAERSASF	0.8286	0.9663	0.0794	97.8	0.0378	NA	1/787	1/4234
Fusion	Breast	CLNS1A--GAB2	HLA-C12:03	YIAERSASF	0.9983	0.9873	0.0888	13.6	0.0424	NA	1/787	1/4234
Fusion	Breast	MAP3K1--PARN	HLA-C12:03	AAAPAGFTA	0.9709	0.984	0.0465	351.9	1.2205	NA	1/787	1/4234
Fusion	Breast	MAP3K1--PARN	HLA-C12:03	AGFTAPSTV	0.8225	0.9881	0.7905	111.8	0.4933	NA	1/787	1/4234
Fusion	Breast	EXOSC10--MTOR	HLA-A02:01	GLTEEPIIPV	0.9979	0.5725	0.7014	19.6	0.2658	NA	1/787	1/4234
Fusion	Breast	GABRP--KCNIP1	HLA-B27:05	GRFSLCGIPA	0.9996	0.7344	0.8043	52.8	0.1698	NA	1/787	1/4234
Fusion	Breast	GABRP--KCNIP1	HLA-B58:01	RPNFGGVPQW	0.9306	0.9164	0.3152	126.3	0.5611	NA	1/787	1/4234
Fusion	Breast	GABRP--KCNIP1	HLA-C03:02	SVFPSWSPAL	0.9991	0.9794	0.4718	248.2	0.8988	NA	1/787	1/4234
Fusion	Breast	GABRP--KCNIP1	HLA-B58:01	QADLCSVFPSW	0.9948	0.994	0.6408	120.7	0.5433	NA	1/787	1/4234
Fusion	Breast	GABRP--KCNIP1	HLA-A02:01	FLPCRCQHV	0.9839	0.7383	0.3268	29.7	0.3978	NA	1/787	1/4234
Fusion	Breast	GABRP--KCNIP1	HLA-A02:01	FLRPNFGGV	0.9582	0.6559	0.1435	72.3	0.8467	NA	1/787	1/4234
Fusion	Breast	GABRP--KCNIP1	HLA-A02:01	HIQADLCSV	0.8929	0.6177	1.0524	144.2	1.3434	NA	1/787	1/4234
Fusion	Breast	GABRP--KCNIP1	HLA-A02:01	SLCGIPAPI	0.9819	0.5549	0.3352	72.8	0.8511	NA	1/787	1/4234
Fusion	Breast	GABRP--KCNIP1	HLA-B27:05	CRCQHVCPL	0.9742	0.7923	1.6762	209.2	0.6444	NA	1/787	1/4234
Fusion	Breast	GABRP--KCNIP1	HLA-C03:02	FPSWSPALF	0.9804	0.9569	0.9472	65.8	0.3221	NA	1/787	1/4234
Fusion	Breast	GABRP--KCNIP1	HLA-C03:02	IQADLCSVF	0.8999	0.971	0.4737	97.3	0.441	NA	1/787	1/4234
Fusion	Breast	GABRP--KCNIP1	HLA-C03:02	SVFPSWSPA	0.8999	0.9845	1.8581	324.8	1.0984	NA	1/787	1/4234
Fusion	Breast	TRAF3--RCOR1	HLA-B58:01	IALQALGMLF	0.9942	0.9557	1.0496	46.8	0.2733	NA	1/787	1/4234
Fusion	Breast	TRAF3--RCOR1	HLA-C03:02	IALQALGMLF	0.9994	0.9812	0.9711	278.2	0.979	NA	1/787	1/4234
Fusion	Breast	TRAF3--RCOR1	HLA-B58:01	IALQALGMLFW	0.994	0.9298	0.6929	41.6	0.2509	NA	1/787	1/4234
Fusion	Breast	TRAF3--RCOR1	HLA-B58:01	LQALGMLFW	0.8454	0.9848	0.6535	105.5	0.4928	NA	1/787	1/4234
Fusion	Breast	TRAF3--RCOR1	HLA-C03:02	IALQALGML	0.992	0.9863	0.879	98.2	0.4442	NA	1/787	1/4234
Fusion	Breast	VGLL1--CD40LG	HLA-B58:01	TSLPNEMLQW	0.9991	0.9831	0.1112	6.3	0.0233	NA	1/787	1/4234
Fusion	Breast	VGLL1--CD40LG	HLA-B58:01	STSLPNEMLQW	0.999	0.9602	0.1566	40.2	0.2451	NA	1/787	1/4234
Fusion	Breast	VGLL1--CD40LG	HLA-C03:02	ASTSLPNEM	0.996	0.9831	0.7226	174.9	0.6991	NA	1/787	1/4234
Fusion	Breast	VTCN1--NUP88	HLA-A02:01	MLKWQSLPSV	0.9813	0.6887	0.6674	9.5	0.1106	NA	1/787	1/4234
Fusion	Breast	VTCN1--NUP88	HLA-A02:01	SILEAFCNVV	0.9879	0.5819	1.3108	63.3	0.7662	NA	1/787	1/4234
Fusion	Breast	VTCN1--NUP88	HLA-B58:01	QSIQRLLPCF	0.9893	0.8435	1.2398	269.9	0.9673	NA	1/787	1/4234
Fusion	Breast	VTCN1--NUP88	HLA-A02:01	KMLKWQSLPSV	0.982	0.7206	1.1086	20.7	0.282	NA	1/787	1/4234
Fusion	Breast	VTCN1--NUP88	HLA-B27:05	QRLLPCFVLEK	0.9999	0.7888	0.7638	110	0.367	NA	1/787	1/4234
Fusion	Breast	VTCN1--NUP88	HLA-B58:01	QSLPSVFW	0.998	0.985	0.5038	35.4	0.2228	NA	1/787	1/4234
Fusion	Breast	VTCN1--NUP88	HLA-A02:01	ILEAFCNVV	0.9743	0.5535	1.2177	107.9	1.1087	NA	1/787	1/4234
Fusion	Breast	VTCN1--NUP88	HLA-A02:01	SILEAFCNV	0.9925	0.5699	0.1149	11.9	0.1424	NA	1/787	1/4234
Fusion	Breast	VTCN1--NUP88	HLA-B27:05	QRLLPCFVL	0.9999	0.8801	0.6758	108.4	0.3619	NA	1/787	1/4234
Fusion	Breast	VTCN1--NUP88	HLA-B58:01	FVLEKMLKW	0.9965	0.9809	0.0745	44.4	0.2631	NA	1/787	1/4234
Fusion	Breast	VTCN1--NUP88	HLA-B58:01	QSLPSVFWL	0.9593	0.9502	0.5038	90.6	0.4455	NA	1/787	1/4234
Fusion	Breast	VTCN1--NUP88	HLA-B58:01	WQSLPSVFW	0.5624	0.9805	1.3658	131.9	0.5782	NA	1/787	1/4234
Fusion	Breast	TOX3--PHKB	HLA-C02:02	YGYSKLMNL	0.8371	0.9785	0.2213	271.8	0.1551	NA	1/787	1/4234
Fusion	Breast	LIN28B--USP45	HLA-C12:03	FVHQGTSI	0.9855	0.9678	0.3137	400.5	1.3403	NA	1/787	1/4234
Fusion	Breast	MTHFD1L--THEMIS	HLA-C12:03	AARDSIVRL	0.984	0.9833	0.0875	72.6	0.3409	NA	1/787	1/4234
Fusion	Breast	PTPRM--KCTD1	HLA-A02:01	RLWLQDYTLL	0.9643	0.6108	0.9913	67.2	0.8034	NA	1/787	1/4234
Fusion	Breast	PTPRM--KCTD1	HLA-A02:01	RLWLQDYTL	0.9754	0.6984	0.0045	16.3	0.2035	NA	1/787	1/4234
Fusion	Breast	GGH--ZFAND1	HLA-A25:01	FVNEDFLPF	0.9784	0.848	0.5924	372.7	0.0347	NA	1/787	1/4234
Fusion	Breast	GGH--ZFAND1	HLA-B15:01	FVNEDFLPF	0.997	0.9623	0.3866	14.8	0.0383	NA	1/787	1/4234
Fusion	Breast	GGH--ZFAND1	HLA-B18:01	AEFFVNEDF	0.9618	0.9398	0.1132	220.1	0.1443	NA	1/787	1/4234
Fusion	Breast	GGH--ZFAND1	HLA-C03:03	FVNEDFLPF	0.9966	0.9919	0.4367	11.3	0.0394	NA	1/787	1/4234
Fusion	Breast	GGH--ZFAND1	HLA-C12:03	FVNEDFLPF	0.9758	0.9842	0.4548	20.6	0.0726	NA	1/787	1/4234
Fusion	Breast	ATP2B1--KCNC2	HLA-B15:01	RIRNEKGECY	0.9995	0.9021	0.1641	322.5	1.3017	NA	1/787	1/4234
Fusion	Breast	ATP2B1--KCNC2	HLA-B15:01	TVQEVSRHY	0.9918	0.8346	0.0962	369	1.4186	NA	1/787	1/4234
Fusion	Breast	ATP2B1--KCNC2	HLA-B15:01	YQVTTVQEV	0.9284	0.8648	0.5213	384.4	1.4539	NA	1/787	1/4234
Fusion	Breast	ATP2B1--KCNC2	HLA-C03:03	YQVTTVQEV	0.5993	0.9875	0.5637	234.8	0.6235	NA	1/787	1/4234
Fusion	Breast	ATP2B1--KCNC2	HLA-C12:02	YQVTTVQEV	0.5035	0.9591	0.3698	157.6	0.2112	NA	1/787	1/4234
Fusion	Breast	FGD6--NUP37	HLA-B15:01	SANSSFCSSF	0.9973	0.7946	1.6177	43.2	0.2129	NA	1/787	1/4234
Fusion	Breast	FGD6--NUP37	HLA-B15:01	RSANSSFCSSF	0.9992	0.8727	1.418	260.1	1.1116	NA	1/787	1/4234
Fusion	Breast	FGD6--NUP37	HLA-B15:01	ANSSFCSSF	0.9711	0.8046	1.8773	407.2	1.5035	NA	1/787	1/4234
Fusion	Breast	FGD6--NUP37	HLA-B15:01	LGRSANSSF	0.994	0.9482	0.9036	123.3	0.6252	NA	1/787	1/4234
Fusion	Breast	SNX14--NKAIN2	HLA-A24:02	SFLVCLELF	0.9768	0.7386	0.4277	63.4	0.1419	NA	1/787	1/4234
Fusion	Breast	ATP6V0A1--MSI2	HLA-B15:03	QMVEDAMLMF	0.961	0.9215	1.3596	76.7	1.1943	NA	1/787	1/4234
Fusion	Breast	ATP6V0A1--MSI2	HLA-B15:03	LQMVEDAMLMF	0.976	0.8369	1.0091	20.2	0.366	NA	1/787	1/4234
Fusion	Breast	ATP6V0A1--MSI2	HLA-B15:03	QMVEDAMLM	0.5709	0.9387	1.418	52.1	0.8938	NA	1/787	1/4234
Fusion	Breast	ATP6V0A1--MSI2	HLA-C16:01	MVEDAMLMF	0.7468	0.9741	0.6692	332.6	1.0161	NA	1/787	1/4234
Fusion	Breast	CLTC--OTOP3	HLA-A74:01	AVNYFSKAMR	0.9891	0.5167	0.3529	481.5	0.2299	NA	1/787	1/4234
Fusion	Breast	CLTC--OTOP3	HLA-C16:01	RAVNYFSKAM	0.9727	0.9677	0.9297	167	0.5644	NA	1/787	1/4234
Fusion	Breast	CLTC--OTOP3	HLA-C16:01	ASMPPRVKL	0.9915	0.9772	0.241	29.9	0.0811	NA	1/787	1/4234
Fusion	Breast	CLTC--OTOP3	HLA-C16:01	AVNYFSKAM	0.8104	0.9693	0.7226	98.8	0.3443	NA	1/787	1/4234
Fusion	Breast	USP32--ELOF1	HLA-B15:03	RKMAHPPADM	0.95	0.7056	0.9663	18.6	0.3355	NA	1/787	1/4234
Fusion	Breast	USP32--ELOF1	HLA-B15:03	KMAHPPADM	0.6376	0.6904	1.2862	61.3	1.0228	NA	1/787	1/4234
Fusion	Breast	USP32--ELOF1	HLA-C16:01	KMAHPPADM	0.7313	0.9786	1.1501	461.1	1.3039	NA	1/787	1/4234
Fusion	Breast	USP6--ELOF1	HLA-B15:03	RKMAHPPADM	0.95	0.7056	0.9663	18.6	0.3355	NA	1/787	1/4234
Fusion	Breast	USP6--ELOF1	HLA-B15:03	KMAHPPADM	0.6376	0.6904	1.2862	61.3	1.0228	NA	1/787	1/4234
Fusion	Breast	USP6--ELOF1	HLA-C16:01	KMAHPPADM	0.7313	0.9786	1.1501	461.1	1.3039	NA	1/787	1/4234
Fusion	Breast	ARNT2--PDLIM5	HLA-A11:01	RSLLRSWLPR	0.9686	0.629	1.7785	99.5	0.5857	NA	1/787	1/4234
Fusion	Breast	ARNT2--PDLIM5	HLA-C08:01	AAVNPPVTL	0.9801	0.991	0.0618	355.9	0.1274	NA	1/787	1/4234
Fusion	Breast	ARNT2--PDLIM5	HLA-C15:02	AAVNPPVTL	0.9996	0.95	0.0794	283.5	0.3073	NA	1/787	1/4234
Fusion	Breast	HUNK--MRAP	HLA-A02:03	AALPHLALHV	0.9846	0.7631	1.1421	73.5	1.5387	NA	1/787	1/4234
Fusion	Breast	HUNK--MRAP	HLA-A02:03	HLALHVLVRL	0.9898	0.8024	0.7399	38.9	0.9553	NA	1/787	1/4234
Fusion	Breast	HUNK--MRAP	HLA-A02:03	ALPHLALHV	0.9973	0.8577	0.0214	18	0.4479	NA	1/787	1/4234
Fusion	Breast	HUNK--MRAP	HLA-C15:02	GAALPHLAL	0.9979	0.9717	0.0427	439.3	0.4687	NA	1/787	1/4234
Fusion	Breast	PPFIA1--RHOD	HLA-B51:01	LPQSYTPTV	0.996	0.5288	0.1354	78.5	0.0093	NA	1/787	1/4234
Fusion	Breast	RARA--PSMD3	HLA-C15:02	YSTPSPASA	0.9992	0.8732	0.897	488.8	0.5168	NA	1/787	1/4234
Fusion	Breast	DERA--LRP6	HLA-B41:01	SESEPGNTTL	0.6368	0.6831	0.0558	430.1	0.585	NA	1/787	1/4234
Fusion	Breast	COG2--PCNX2	HLA-A02:01	FQIRCCPFNV	0.9768	0.7351	0.7788	38.6	0.5033	NA	1/787	1/4234
Fusion	Breast	SLC30A7--HHIPL2	HLA-A02:01	FAWAAPRPV	0.929	0.8606	0.3624	72.4	0.8478	NA	1/787	1/4234
Fusion	Breast	SLC30A7--HHIPL2	HLA-B07:02	APRPVPSQG	0.9967	0.5044	0.5077	268.3	0.5752	NA	1/787	1/4234
Fusion	Breast	SLC30A7--HHIPL2	HLA-B55:01	FAWAAPRPV	0.9967	0.7147	0.8108	289.8	0.1009	NA	1/787	1/4234
Fusion	Breast	SLC30A7--HHIPL2	HLA-C03:03	FAWAAPRPV	0.9959	0.9941	0.23	4.2	0.0123	NA	1/787	1/4234
Fusion	Breast	SLC30A7--HHIPL2	HLA-C07:02	TRNGRSRIF	0.7997	0.8517	0.4232	193.4	0.1245	NA	1/787	1/4234
Fusion	Breast	BCAS3--ABCA8	HLA-B35:01	SGYSSLMVY	0.9786	0.8712	0.3822	406.6	0.7726	NA	1/787	1/4234
Fusion	Breast	TBCD--STXBP4	HLA-B57:03	AAQENRFTLW	0.9985	0.9968	0.0717	54.2	0.1149	NA	1/787	1/4234
Fusion	Breast	TBCD--STXBP4	HLA-B57:03	LAAQENRFTLW	0.9998	0.9955	0.2138	111.3	0.2398	NA	1/787	1/4234
Fusion	Breast	TBCD--STXBP4	HLA-A68:02	FTLWVGGSL	0.7771	0.8355	0.3352	46.6	0.396	NA	1/787	1/4234
Fusion	Breast	TBCD--STXBP4	HLA-B57:03	VGGSLHSRW	0.9886	0.9941	0.5165	386	0.6533	NA	1/787	1/4234
Fusion	Breast	ZNF652--CD300LD	HLA-B57:03	APTSCSCSSW	0.6271	0.9497	1.6984	277.5	0.5094	NA	1/787	1/4234
Fusion	Breast	ZNF652--CD300LD	HLA-B57:03	RAPTSCSCSSW	0.9948	0.9417	0.3914	194.9	0.3866	NA	1/787	1/4234
Fusion	Breast	CREB3L2--LASP1	HLA-A68:02	ASVGALQGGV	0.9374	0.8086	1.7731	287	1.425	NA	1/787	1/4234
Fusion	Breast	CREB3L2--LASP1	HLA-C03:04	YTASVGAL	0.9998	0.9739	0.7967	306.2	0.7319	NA	1/787	1/4234
Fusion	Breast	DRG2--ZNF624	HLA-B53:01	FPSVGKTW	0.9894	0.5742	0.051	87.6	0.1104	NA	1/787	1/4234
Fusion	Breast	GABARAP--MYOCD	HLA-A68:02	ATMGQLYQV	0.9913	0.8745	0.0187	11.6	0.0803	NA	1/787	1/4234
Fusion	Breast	NLK--VBP1	HLA-C03:04	YGAFGVVWL	0.9689	0.9976	1.205	250.9	0.6499	NA	1/787	1/4234
Fusion	Breast	MED13L--TRAFD1	HLA-B35:01	FPNLTWRLTW	0.9937	0.7982	0.9814	124.1	0.3657	NA	1/787	1/4234
Fusion	Breast	MED13L--TRAFD1	HLA-A24:02	HFPNLTWRLTW	0.9988	0.9097	0.2978	198.7	0.361	NA	1/787	1/4234
Fusion	Breast	MED13L--TRAFD1	HLA-A24:02	HFPNLTWRL	0.988	0.5246	0.2089	98.4	0.2093	NA	1/787	1/4234
Fusion	Breast	MED13L--TRAFD1	HLA-C15:02	RSTVKGTLV	0.9959	0.7539	0.4659	96.4	0.0873	NA	1/787	1/4234
Fusion	Breast	CAPS2--GLIPR1	HLA-A68:02	TTWDPALAQI	0.9884	0.9071	0.2604	74.6	0.5856	NA	1/787	1/4234
Fusion	Breast	CAPS2--GLIPR1	HLA-A68:02	FTTWDPALA	0.9599	0.7762	0.451	30.1	0.2658	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A10	HLA-B44:03	RQEILSNAEF	0.8549	0.9103	1.014	169.5	0.189	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A10	HLA-B44:03	AEFEAYINA	0.9023	0.9721	0.184	337.3	0.33	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A10	HLA-B44:03	QEILSNAEF	0.9983	0.9309	0.2009	32.4	0.0346	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A1	HLA-B44:03	RQEILSNAEF	0.8549	0.9103	1.014	169.5	0.189	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A1	HLA-B44:03	AEFEAYINA	0.9023	0.9721	0.184	337.3	0.33	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A1	HLA-B44:03	QEILSNAEF	0.9983	0.9309	0.2009	32.4	0.0346	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A3	HLA-B44:03	RQEILSNAEF	0.8549	0.9103	1.014	169.5	0.189	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A3	HLA-B44:03	AEFEAYINA	0.9023	0.9721	0.184	337.3	0.33	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A3	HLA-B44:03	QEILSNAEF	0.9983	0.9309	0.2009	32.4	0.0346	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A4	HLA-B44:03	RQEILSNAEF	0.8549	0.9103	1.014	169.5	0.189	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A4	HLA-B44:03	AEFEAYINA	0.9023	0.9721	0.184	337.3	0.33	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A4	HLA-B44:03	QEILSNAEF	0.9983	0.9309	0.2009	32.4	0.0346	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A5	HLA-B44:03	RQEILSNAEF	0.8549	0.9103	1.014	169.5	0.189	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A5	HLA-B44:03	AEFEAYINA	0.9023	0.9721	0.184	337.3	0.33	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A5	HLA-B44:03	QEILSNAEF	0.9983	0.9309	0.2009	32.4	0.0346	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A6	HLA-B44:03	RQEILSNAEF	0.8549	0.9103	1.014	169.5	0.189	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A6	HLA-B44:03	AEFEAYINA	0.9023	0.9721	0.184	337.3	0.33	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A6	HLA-B44:03	QEILSNAEF	0.9983	0.9309	0.2009	32.4	0.0346	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A7	HLA-B44:03	RQEILSNAEF	0.8549	0.9103	1.014	169.5	0.189	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A7	HLA-B44:03	AEFEAYINA	0.9023	0.9721	0.184	337.3	0.33	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A7	HLA-B44:03	QEILSNAEF	0.9983	0.9309	0.2009	32.4	0.0346	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A8	HLA-B44:03	RQEILSNAEF	0.8549	0.9103	1.014	169.5	0.189	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A8	HLA-B44:03	AEFEAYINA	0.9023	0.9721	0.184	337.3	0.33	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A8	HLA-B44:03	QEILSNAEF	0.9983	0.9309	0.2009	32.4	0.0346	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A9	HLA-B44:03	RQEILSNAEF	0.8549	0.9103	1.014	169.5	0.189	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A9	HLA-B44:03	AEFEAYINA	0.9023	0.9721	0.184	337.3	0.33	NA	1/787	1/4234
Fusion	Breast	ASMTL--UGT1A9	HLA-B44:03	QEILSNAEF	0.9983	0.9309	0.2009	32.4	0.0346	NA	1/787	1/4234
Fusion	Breast	ETV6--YTHDF2	HLA-A31:01	RYRSPHSGTSR	0.9918	0.6563	0.5312	40.2	0.3306	NA	1/787	1/4234
Fusion	Breast	ETV6--YTHDF2	HLA-A31:01	RSPHSGTSR	0.9566	0.5919	0.8108	298.2	1.558	NA	1/787	1/4234
Fusion	Breast	IGF2BP2--NCEH1	HLA-C12:03	YSVSKKLRV	0.9137	0.9345	0.2913	129	0.5665	NA	1/787	1/4234
Fusion	Breast	IGF2BP2--NCEH1	HLA-C16:01	YSVSKKLRV	0.769	0.9544	0.2352	327.7	1.0056	NA	1/787	1/4234
Fusion	Breast	BTBD3--GCNT2	HLA-C03:04	LAMLKCSWL	0.9928	0.9932	1.7785	263.1	0.6689	NA	1/787	1/4234
Fusion	Breast	GFOD1--BCAS1	HLA-A02:01	KTLVDLGISV	0.9876	0.716	1.0418	34.1	0.4526	NA	1/787	1/4234
Fusion	Breast	GFOD1--BCAS1	HLA-A02:01	TLVDLGISV	0.998	0.8373	0.1317	17.4	0.227	NA	1/787	1/4234
Fusion	Breast	GFOD1--BCAS1	HLA-C03:04	IAVKTLVDL	0.9992	0.9679	0.3352	34.5	0.1574	NA	1/787	1/4234
Fusion	Breast	PALMD--CCDC171	HLA-A32:01	RSKFQNLWTF	0.9884	0.9929	0.4426	27.2	0.0504	NA	1/787	1/4234
Fusion	Breast	PALMD--CCDC171	HLA-B42:02	ILRSKFQNL	0.9987	0.5035	0.9173	384.2	0.2407	NA	1/787	1/4234
Fusion	Breast	PALMD--CCDC171	HLA-C12:03	FTHRCSQEF	0.9286	0.9736	0.5181	39	0.1672	NA	1/787	1/4234
Fusion	Breast	ATF6--SPATA46	HLA-C03:04	YPLRHPAQL	0.9976	0.9747	0.3657	109.6	0.3841	NA	1/787	1/4234
Fusion	Breast	ATF6--SPATA46	HLA-C07:01	MRNVGSDTL	0.9827	0.6577	0.3987	140.6	0.0554	NA	1/787	1/4234
Fusion	Breast	BAG4--NEDD8	HLA-C03:04	RAGGSHQTL	0.9922	0.9506	0.5181	138.9	0.4472	NA	1/787	1/4234
Fusion	Breast	HECTD1--SCFD1	HLA-B18:01	FETAKSTCYSY	0.9934	0.6743	1.3381	203.6	0.1302	NA	1/787	1/4234
Fusion	Breast	HECTD1--SCFD1	HLA-B18:01	FETAKSTCY	0.9954	0.7115	0.0995	125.3	0.0865	NA	1/787	1/4234
Fusion	Breast	BAX--DHDH	HLA-A02:05	KLVLKVVAV	0.9942	0.685	0.0481	161.2	1.0103	NA	1/787	1/4234
Fusion	Breast	BAX--DHDH	HLA-C16:01	FASKLVLKV	0.9874	0.9775	0.0052	152.6	0.5203	NA	1/787	1/4234
Fusion	Breast	EXOC7--USP22	HLA-C16:01	KVIHQTRAL	0.9523	0.9719	0.3367	41.7	0.1268	NA	1/787	1/4234
Fusion	Breast	NIF3L1--ORC2	HLA-C16:01	FSARGIFRL	0.9076	0.9658	0.4048	52.3	0.169	NA	1/787	1/4234
Fusion	Breast	NIF3L1--ORC2	HLA-C16:01	SARGIFRLL	0.6305	0.9759	0.0995	121.8	0.415	NA	1/787	1/4234
Fusion	Breast	SPAG9--SKAP1	HLA-C16:01	TAHSRIRSI	0.743	0.9701	0.3717	100.1	0.3484	NA	1/787	1/4234
Fusion	Breast	YPEL2--B4GALNT2	HLA-C16:01	RAAPPTAPA	0.9796	0.9906	0.3956	83.4	0.2919	NA	1/787	1/4234
Fusion	Breast	FAM69A--NTNG1	HLA-A02:01	RLAAAAPTL	0.9852	0.7333	0.1718	30.4	0.4064	NA	1/787	1/4234
Fusion	Breast	FAM69A--NTNG1	HLA-C15:02	RLAAAAPTL	0.9792	0.9658	0.6295	251.3	0.273	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A02:01	FLREIIEAML	0.9647	0.5453	0.7514	55.8	0.689	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A02:01	IMALGVFFGL	0.9699	0.6748	0.3529	24.6	0.3372	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A02:01	LLCRPGTPGV	0.9518	0.6987	0.8723	130.9	1.259	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A02:01	LLWGYKDEIL	0.9557	0.6142	0.7247	124.1	1.2163	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A02:01	MALGVFFGLV	0.9671	0.7924	1.9404	96.3	1.0336	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A32:01	GVFFGLVFTW	0.9878	0.9952	0.4295	160.6	0.2869	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A32:01	RLKSMINTTL	0.9565	0.9701	0.4183	302.7	0.4996	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A32:01	RSVYITFSDY	0.8432	0.8325	1.8581	270.7	0.4569	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A32:01	RTMVFPVMYL	0.9925	0.9291	0.1977	33.3	0.0598	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A32:01	YLNFTKIVEW	0.9932	0.9473	0.9993	441	0.6849	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	GTPGVNHCSW	0.9941	0.898	0.3445	97.2	0.4672	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	GVFFGLVFTW	0.9968	0.9972	0.6018	78.6	0.4013	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	ITKDEVLYVF	0.9993	0.8158	0.4213	312.5	1.0707	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	RNGTEAFDSW	0.9877	0.9904	1.1142	139.4	0.5999	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	RTMVFPVMYL	0.9947	0.898	1.3416	70.2	0.3708	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	SQLTEASTSW	0.9136	0.9757	0.7226	384.4	1.2051	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	SWAGPTVIEW	0.9539	0.9644	1.2078	45.2	0.2666	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	VTHTVDELLW	0.9996	0.9894	0.0523	7.1	0.03	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	YLNFTKIVEW	0.9919	0.7973	1.4358	207.1	0.797	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-C07:01	FRYKVPAEIL	0.9959	0.557	0.2464	117	0.0459	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A02:01	YVFPSDFCRSV	0.8493	0.6651	0.5038	48.8	0.6162	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	CSWAGPTVIEW	0.9993	0.9851	0.3367	16.4	0.1096	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	FVTHTVDELLW	0.9981	0.9737	0.2653	78.9	0.4024	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	ISAVSNKAYVF	0.9978	0.7617	1.8016	148.6	0.6276	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	LGVFFGLVFTW	0.9917	0.9976	1.5977	174.7	0.6986	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A02:01	YLNESVHI	0.9938	0.5749	0.8538	244.7	1.8728	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	HTVDELLW	0.9991	0.9924	0.2825	45.7	0.269	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	LTEASTSW	0.9976	0.989	0.6191	300.8	1.0439	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A02:01	ALGVFFGLV	0.9771	0.881	0.3386	121.4	1.1987	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A02:01	CLGSGVLNV	0.9722	0.9086	0.5512	48.7	0.6156	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A02:01	FLREIIEAM	0.9811	0.561	0.0201	23.3	0.32	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A02:01	FLTGEDSYL	0.9659	0.8509	0.1448	15.7	0.195	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A02:01	GLPAFRYKV	0.9725	0.6337	0.1855	68.5	0.8147	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A02:01	ILRGETPRV	0.9663	0.5468	0.1255	217.7	1.7363	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A02:01	MALGVFFGL	0.9192	0.6303	0.2557	72.7	0.85	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A02:01	MSFPHFYQA	0.8359	0.6419	0.0658	243.1	1.8645	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A02:01	YVFERDQSV	0.9865	0.5443	0.0201	15.7	0.1945	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A32:01	AVSNKAYVF	0.983	0.9276	0.1255	217.5	0.3784	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A32:01	IIMALGVFF	0.9006	0.9808	1.2431	192.2	0.3403	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A32:01	IIMSFPHFY	0.9106	0.9614	0.1112	91.9	0.1641	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A32:01	KAYQQKLFV	0.9481	0.9375	0.1098	480.6	0.7357	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A32:01	KSMINTTLI	0.9876	0.9661	0.4277	38.1	0.0688	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A32:01	MALGVFFGL	0.8118	0.9678	0.6117	101.5	0.1755	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A32:01	RTMVFPVMY	0.987	0.9014	0.0025	25.1	0.0435	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A32:01	SMINTTLII	0.9107	0.9549	0.8294	55.4	0.1014	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A32:01	TMVFPVMYL	0.7637	0.9151	1.4485	341	0.5527	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A32:01	VFFGLVFTW	0.9579	0.9979	0.6273	146.4	0.2615	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-A32:01	VLYVFPSDF	0.8147	0.9633	1.3344	113.9	0.1943	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	CSWAGPTVI	0.9682	0.9716	1.6929	100.6	0.478	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	GTNDGDYVF	0.9457	0.8674	0.9735	299.5	1.0407	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	IIMSFPHFY	0.8739	0.8156	1.726	351	1.1469	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	KSMINTTLI	0.9957	0.7714	0.4883	26.7	0.1781	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	LNFTKIVEW	0.9976	0.8397	0.3657	165.2	0.674	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	MALGVFFGL	0.9478	0.9779	1.0474	132.9	0.5811	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	MSFPHFYQA	0.781	0.9619	1.0807	422.4	1.2799	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	QLTEASTSW	0.8461	0.9861	0.5312	189.1	0.744	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	RTMVFPVMY	0.9913	0.9274	0.0154	29.9	0.1946	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	VFFGLVFTW	0.8198	0.9964	0.5868	338.9	1.125	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-B58:01	WAGPTVIEW	0.9983	0.9746	0.0344	8.8	0.0443	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-C07:01	FRPDISPYF	0.9954	0.6133	0.0177	60.6	0.0188	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-C07:01	FRYKVPAEI	0.9968	0.5044	0.0441	17.6	0.008	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-C07:01	IRTLNIPVL	0.9976	0.6175	0.1527	184.6	0.0704	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-C07:01	KRFQINIYV	0.9732	0.7712	0.0904	162.1	0.0629	NA	1/787	1/4234
Fusion	Breast	CCNI--SCARB2	HLA-C07:01	LRNKANIQF	0.9936	0.7488	0.3495	233.4	0.0862	NA	1/787	1/4234
Fusion	Breast	GALNT14--SF3B6	HLA-B27:05	MRTSLMPRMH	0.9994	0.7983	1.4289	378.5	1.0155	NA	1/787	1/4234
Fusion	Breast	GALNT14--SF3B6	HLA-B27:05	FRRWTQRRR	0.9698	0.5327	1.3803	487.2	1.2221	NA	1/787	1/4234
Fusion	Breast	GALNT14--SF3B6	HLA-B27:05	MRTSLMPRM	0.9999	0.8382	0.4033	30.3	0.0646	NA	1/787	1/4234
Fusion	Breast	GALNT14--SF3B6	HLA-B53:01	MPTGHFRRW	0.9852	0.6721	0.0154	17	0.0184	NA	1/787	1/4234
Fusion	Breast	GOLGB1--CCDC58	HLA-B27:05	CRIHFKPPK	0.9979	0.8019	0.7749	65.1	0.2157	NA	1/787	1/4234
Fusion	Breast	LDB1--PCGF6	HLA-B27:05	RRSNYWTCRK	0.9994	0.8692	0.7767	35.8	0.0901	NA	1/787	1/4234
Fusion	Breast	LDB1--PCGF6	HLA-B27:05	RRSNYWTCRKI	0.9991	0.8583	0.8108	179.7	0.5678	NA	1/787	1/4234
Fusion	Breast	LDB1--PCGF6	HLA-B27:05	RRSNYWTCR	0.9979	0.8696	0.3639	44.8	0.1269	NA	1/787	1/4234
Fusion	Breast	RNGTT--MDN1	HLA-B27:05	SRKVEDTFQK	0.9988	0.7849	0.8228	458.5	1.1676	NA	1/787	1/4234
Fusion	Breast	TRA2A--HECW1	HLA-B27:05	KSRICTRTGF	0.9962	0.6752	1.4399	32.9	0.0738	NA	1/787	1/4234
Fusion	Breast	TRA2A--HECW1	HLA-B27:05	SRICTRTGF	0.9997	0.7061	0.0583	44.2	0.1242	NA	1/787	1/4234
Fusion	Breast	KDM4C--ARMC2	HLA-C16:01	KVAKLSQKL	0.8992	0.9696	0.4367	181.7	0.6068	NA	1/787	1/4234
Fusion	Breast	SBNO2--CRIP2	HLA-A02:01	GLAQVLPQV	0.9966	0.6546	0.0003	5.8	0.0472	NA	1/787	1/4234
Fusion	Breast	SBNO2--CRIP2	HLA-C16:01	QVLPQVRAL	0.9478	0.9722	0.241	121.8	0.415	NA	1/787	1/4234
Fusion	Breast	SPATA5--MMRN1	HLA-C16:01	RSIQAVVGI	0.9241	0.9704	0.5454	113.2	0.3871	NA	1/787	1/4234
Fusion	Breast	CAPZB--EMC1	HLA-C14:02	TRQDLTTEL	0.7644	0.9785	0.721	268.2	0.7833	NA	1/787	1/4234
Fusion	Breast	NUBPL--SCFD1	HLA-C16:01	AANDSARKL	0.6911	0.9827	0.3318	210.6	0.6919	NA	1/787	1/4234
Fusion	Breast	LRBA--PPARGC1A	HLA-A68:02	TVFNLCAALV	0.9935	0.7156	0.4808	14.6	0.1108	NA	1/787	1/4234
Fusion	Breast	LRBA--PPARGC1A	HLA-C16:01	TVFNLCAAL	0.8106	0.9795	0.9203	122.7	0.4184	NA	1/787	1/4234
Fusion	Breast	MSI2--DHX40	HLA-C07:01	FRNKEKRLF	0.9914	0.6943	0.3283	111.4	0.0433	NA	1/787	1/4234
Fusion	Breast	MSI2--DHX40	HLA-C07:01	RREELLQLF	0.9971	0.7909	0.2213	445.6	0.1524	NA	1/787	1/4234
Fusion	Breast	REV3L--ARHGEF25	HLA-A68:02	AAAQGFSQV	0.9039	0.647	0.2464	289.8	1.4361	NA	1/787	1/4234
Fusion	Breast	REV3L--ARHGEF25	HLA-C16:01	AAAQGFSQV	0.7021	0.9885	0.3386	130	0.4449	NA	1/787	1/4234
Fusion	Breast	REV3L--ARHGEF25	HLA-C16:01	AAQGFSQVL	0.8966	0.9798	0.1547	41.7	0.1268	NA	1/787	1/4234
Fusion	Breast	SOGA1--RBL1	HLA-B08:01	ELQNRLSQSL	0.9946	0.8282	1.566	135.6	0.2431	NA	1/787	1/4234
Fusion	Breast	ELF5--EXT2	HLA-A02:01	VVLGSVLPV	0.9907	0.6606	0.3235	15.4	0.1902	NA	1/787	1/4234
Fusion	Breast	ELF5--EXT2	HLA-C03:04	VVLGSVLPV	0.6496	0.9923	1.205	120.4	0.4072	NA	1/787	1/4234
Fusion	Breast	ELF5--EXT2	HLA-C15:02	VVLGSVLPV	0.9968	0.9428	0.9357	380.1	0.4103	NA	1/787	1/4234
Fusion	Breast	PDLIM1--SORBS1	HLA-C03:04	LAISRDSSPL	0.9996	0.974	1.0955	89.5	0.3377	NA	1/787	1/4234
Fusion	Breast	PDLIM1--SORBS1	HLA-C03:04	ISRDSSPLL	0.9986	0.9771	0.4548	160.8	0.4883	NA	1/787	1/4234
Fusion	Breast	PDLIM1--SORBS1	HLA-C15:02	ISRDSSPLL	0.9969	0.8847	0.4698	157.8	0.1714	NA	1/787	1/4234
Fusion	Breast	UBXN1--C11orf80	HLA-B40:01	QELDLVLPDV	0.8498	0.6252	0.9889	282.8	0.4917	NA	1/787	1/4234
Fusion	Breast	GSK3B--MAATS1	HLA-B15:03	SMKVSNPLF	0.8177	0.7721	0.3367	10.4	0.1641	NA	1/787	1/4234
Fusion	Breast	OSGIN2--DECR1	HLA-B15:03	GGAWHFFSY	0.8226	0.928	1.063	69	1.1191	NA	1/787	1/4234
Fusion	Breast	SNAPC5--RPL4	HLA-B15:03	RLKACARPL	0.6578	0.7214	1.6762	97.8	1.3989	NA	1/787	1/4234
Fusion	Breast	STK26--ZC4H2	HLA-B15:03	FQKNKTLQM	0.9405	0.7806	0.2499	6.3	0.0677	NA	1/787	1/4234
Fusion	Breast	STK26--ZC4H2	HLA-C02:10	FQKNKTLQM	0.766	0.9825	0.3787	391.3	0.2549	NA	1/787	1/4234
Fusion	Breast	TCF12--MGST2	HLA-B15:03	SQFSGSGYFA	0.8263	0.883	1.6929	11.6	0.1869	NA	1/787	1/4234
Fusion	Breast	TCF12--MGST2	HLA-B15:03	SQFSGSGYFAL	0.9848	0.8716	0.4769	33.2	0.6085	NA	1/787	1/4234
Fusion	Breast	TCF12--MGST2	HLA-B15:03	SQFSGSGY	0.923	0.828	0.2025	9.8	0.1504	NA	1/787	1/4234
Fusion	Breast	TCF12--MGST2	HLA-B15:03	SQFSGSGYF	0.8602	0.8662	0.1947	2	0.0064	NA	1/787	1/4234
Fusion	Breast	TCF12--MGST2	HLA-B15:03	SSQFSGSGY	0.581	0.8471	1.3596	161.4	1.9486	NA	1/787	1/4234
Fusion	Breast	EIF2S1--GPHN	HLA-B57:01	KSKTETLIDW	0.9999	0.9613	0.0822	18.3	0.0349	NA	1/787	1/4234
Fusion	Breast	EIF2S1--GPHN	HLA-B57:01	KTETLIDW	0.999	0.975	0.7226	430.6	0.6689	NA	1/787	1/4234
Fusion	Breast	MSRB2--MALRD1	HLA-B08:01	FLMTHITV	0.9982	0.8625	0.6949	78.3	0.1369	NA	1/787	1/4234
Fusion	Breast	MSRB2--MALRD1	HLA-B08:01	FLANRKVPI	0.9965	0.6888	0.5002	18.1	0.0285	NA	1/787	1/4234
Fusion	Breast	MSRB2--MALRD1	HLA-B08:01	FLMTHITVA	0.969	0.8482	0.4718	55.6	0.1006	NA	1/787	1/4234
Fusion	Breast	MSRB2--MALRD1	HLA-C07:01	YAQNNTWTL	0.8537	0.8273	0.6058	465.1	0.159	NA	1/787	1/4234
Fusion	Breast	WAC--UBAC2	HLA-A02:01	HLAPVFALFV	0.9977	0.6043	0.1994	11.2	0.1333	NA	1/787	1/4234
Fusion	Breast	WAC--UBAC2	HLA-A02:01	KLQMHLAPV	0.995	0.5852	0.2825	8.9	0.1017	NA	1/787	1/4234
Fusion	Breast	NFIA--DCLK1	HLA-A03:01	VTELVRVSQK	0.9541	0.5439	1.8266	193.9	0.6291	NA	1/787	1/4234
Fusion	Breast	NFIA--DCLK1	HLA-A30:01	KLSAWRLLY	0.9365	0.9202	0.2335	212.4	1.0062	NA	1/787	1/4234
Fusion	Breast	NFIA--DCLK1	HLA-A30:01	LSAWRLLYV	0.9473	0.9503	1.6615	344.4	1.5108	NA	1/787	1/4234
Fusion	Breast	SENP5--PIGX	HLA-A30:01	KVYKNVILQV	0.9952	0.9046	0.6875	76.8	0.387	NA	1/787	1/4234
Fusion	Breast	SENP5--PIGX	HLA-A30:01	KVYKNVILQ	0.956	0.8895	0.9642	347.4	1.5212	NA	1/787	1/4234
Fusion	Breast	IGF1R--ADPGK	HLA-B15:01	SQLRFKGSSL	0.9863	0.8802	0.4018	200.9	0.9164	NA	1/787	1/4234
Fusion	Breast	MAP2K1--UCKL1	HLA-B41:01	WEAAVPLGRPL	0.971	0.9545	0.6737	404.2	0.5557	NA	1/787	1/4234
Fusion	Breast	MAP2K1--UCKL1	HLA-C03:04	AAVPLGRPL	0.9997	0.9871	0.0697	11.1	0.039	NA	1/787	1/4234
Fusion	Breast	MAP2K1--UCKL1	HLA-C03:04	SAWEAAVPL	0.9997	0.9965	0.276	6.8	0.0254	NA	1/787	1/4234
Fusion	Breast	CCDC66--FLNB	HLA-A02:01	KLQEVGSSV	0.9931	0.7159	0.1435	24.2	0.3316	NA	1/787	1/4234
Fusion	Breast	CCDC66--FLNB	HLA-A02:01	KQLEHQPAI	0.9641	0.7009	0.0523	45.3	0.5791	NA	1/787	1/4234
Fusion	Breast	CCDC66--FLNB	HLA-A02:01	RLTPKLQEV	0.997	0.5467	0.0084	29.6	0.3969	NA	1/787	1/4234
Fusion	Breast	CCDC66--FLNB	HLA-B07:02	RPQISRLTP	0.992	0.5492	0.451	235.3	0.5255	NA	1/787	1/4234
Fusion	Breast	CCDC66--FLNB	HLA-B55:01	MPAGPVAEA	0.9941	0.6197	0.0025	55.7	0.0131	NA	1/787	1/4234
Fusion	Breast	CCNF--MALL	HLA-C16:01	FSMPSASI	0.9914	0.9873	0.6212	152.4	0.5194	NA	1/787	1/4234
Fusion	Breast	CCNF--MALL	HLA-B35:01	SPRCSTFSM	0.9075	0.7055	0.7329	45.6	0.1759	NA	1/787	1/4234
Fusion	Breast	GUK1--TARBP1	HLA-C16:01	RAPPDGCWL	0.5766	0.9903	0.5583	371.6	1.0941	NA	1/787	1/4234
Fusion	Breast	PPA1--LRRC20	HLA-B57:01	LSSLPPCRRW	0.9997	0.9714	0.3413	33	0.0852	NA	1/787	1/4234
Fusion	Breast	PPA1--LRRC20	HLA-B57:01	YGAIPQSSTW	0.9995	0.9319	0.0794	42.3	0.1166	NA	1/787	1/4234
Fusion	Breast	PPA1--LRRC20	HLA-A24:02	NYGAIPQSSTW	0.9996	0.8966	0.1609	452.9	0.6179	NA	1/787	1/4234
Fusion	Breast	PPA1--LRRC20	HLA-B57:01	NYGAIPQSSTW	0.9994	0.9446	0.4246	476.4	0.7213	NA	1/787	1/4234
Fusion	Breast	PPA1--LRRC20	HLA-B57:01	SLSSLPPCRRW	0.9996	0.9689	0.4646	272.6	0.4746	NA	1/787	1/4234
Fusion	Breast	PPA1--LRRC20	HLA-B57:01	GAIPQSSTW	0.9984	0.9409	0.037	21.5	0.0491	NA	1/787	1/4234
Fusion	Breast	PPA1--LRRC20	HLA-B57:01	SSLPPCRRW	0.9992	0.9718	0.2745	25.5	0.0631	NA	1/787	1/4234
Fusion	Breast	PPA1--LRRC20	HLA-C15:02	YTASPARSV	0.9996	0.9128	0.1656	45.4	0.0271	NA	1/787	1/4234
Fusion	Breast	HMGN1--RORA	HLA-C12:03	KAAAKIGML	0.9731	0.9813	0.3822	91.8	0.4158	NA	1/787	1/4234
Fusion	Breast	HMGN1--RORA	HLA-C16:01	KAAAKIGML	0.9683	0.9788	0.3398	59	0.1992	NA	1/787	1/4234
Fusion	Breast	CTBP1--POLN	HLA-A68:02	PVFGEFFAEV	0.9167	0.79	1.6327	486	1.9739	NA	1/787	1/4234
Fusion	Breast	CTBP1--POLN	HLA-B15:03	SSYSGSCPVF	0.9827	0.6945	0.8208	11.6	0.1865	NA	1/787	1/4234
Fusion	Breast	CTBP1--POLN	HLA-B15:03	GSCPVFGEF	0.8639	0.7532	0.5019	157.6	1.9171	NA	1/787	1/4234
Fusion	Breast	CTBP1--POLN	HLA-B45:01	QENQGLRPS	0.9902	0.9733	1.202	461.7	0.4192	NA	1/787	1/4234
Fusion	Breast	CTBP1--POLN	HLA-C02:10	SSYSGSCPV	0.6882	0.9779	0.9173	248.3	0.1409	NA	1/787	1/4234
Fusion	Breast	FGFR2--ENPP2	HLA-B15:03	RRQIISLFTF	0.921	0.6513	1.4863	7.3	0.0911	NA	1/787	1/4234
Fusion	Breast	FGFR2--ENPP2	HLA-B15:03	LRRQIISLF	0.6076	0.6571	0.6233	35.8	0.6565	NA	1/787	1/4234
Fusion	Breast	FGFR2--ENPP2	HLA-B15:03	RQIISLFTF	0.8503	0.6085	0.0187	2.9	0.0098	NA	1/787	1/4234
Fusion	Breast	GID4--FDXR	HLA-B45:01	VEVVLQHPQA	0.976	0.9762	0.4113	202.9	0.2061	NA	1/787	1/4234
Fusion	Breast	PDCD7--TAF15	HLA-B15:03	AARKDSGSY	0.6741	0.6907	0.7058	40.4	0.7308	NA	1/787	1/4234
Fusion	Breast	TRIO--FAM53B	HLA-B15:03	HVKENCQTF	0.8849	0.6584	0.0601	108.5	1.492	NA	1/787	1/4234
Fusion	Breast	DEK--NUP210L	HLA-B44:03	EEVFEKLQLF	0.9995	0.8848	0.3987	104.4	0.1198	NA	1/787	1/4234
Fusion	Breast	DEK--NUP210L	HLA-B44:03	EEVFEKLQLFY	0.9996	0.8803	0.361	317.5	0.315	NA	1/787	1/4234
Fusion	Breast	CDCA2--ADAM28	HLA-C07:02	RRLGSVPVI	0.9185	0.9508	0.23	315.9	0.2088	NA	1/787	1/4234
Fusion	Breast	BSPRY--NPM1	HLA-A02:14	LQLIAIQDL	0.7136	0.7206	1.8911	379.6	1.8102	NA	1/787	1/4234
Fusion	Breast	BSPRY--NPM1	HLA-B53:01	IAIQDLWQW	0.9836	0.6323	0.0618	32.3	0.0373	NA	1/787	1/4234
Fusion	Breast	BSPRY--NPM1	HLA-B53:01	QLIAIQDLW	0.7754	0.7484	0.8991	422.6	0.416	NA	1/787	1/4234
Fusion	Breast	C11orf49--PPME1	HLA-B35:01	LAMWLKPCM	0.9059	0.9178	1.5485	149.8	0.4082	NA	1/787	1/4234
Fusion	Breast	C11orf49--PPME1	HLA-C16:01	LAMWLKPCM	0.9027	0.9898	0.7494	95.9	0.3348	NA	1/787	1/4234
Fusion	Breast	CELF1--LUZP2	HLA-B35:01	VPLPVTLKM	0.9895	0.9027	0.1272	31.1	0.1238	NA	1/787	1/4234
Fusion	Breast	CELF1--LUZP2	HLA-C16:01	CSLNSSPVL	0.8042	0.9866	1.0547	132.5	0.454	NA	1/787	1/4234
Fusion	Breast	CELF1--LUZP2	HLA-C16:01	IQVPLPVTL	0.9933	0.9893	0.1182	113.9	0.3892	NA	1/787	1/4234
Fusion	Breast	CELF1--LUZP2	HLA-C16:01	VLLETMRAL	0.8418	0.9581	0.6854	184.6	0.6162	NA	1/787	1/4234
Fusion	Breast	HIVEP1--DST	HLA-A32:01	RIFIRERLPLW	0.9985	0.9795	0.3009	465.9	0.7169	NA	1/787	1/4234
Fusion	Breast	HIVEP1--DST	HLA-B58:01	RIFIRERLPLW	0.9955	0.9297	1.9476	213	0.8139	NA	1/787	1/4234
Fusion	Breast	HIVEP1--DST	HLA-A32:01	KQASTSRIF	0.9357	0.8299	0.2482	423.4	0.662	NA	1/787	1/4234
Fusion	Breast	HIVEP1--DST	HLA-A32:01	RLPLWGGQW	0.9823	0.9836	0.1196	168.3	0.2995	NA	1/787	1/4234
Fusion	Breast	BIRC6--ABCC11	HLA-B42:01	VPRGGHSM	0.9522	0.6331	0.3041	43.4	0.2179	NA	1/787	1/4234
Fusion	Breast	BIRC6--ABCC11	HLA-A30:01	HSMGKSYFR	0.9858	0.777	0.3009	272.1	1.2417	NA	1/787	1/4234
Fusion	Breast	ZZEF1--SMG6	HLA-C03:04	LAHDLVIAA	0.9914	0.9959	0.1182	276.5	0.6887	NA	1/787	1/4234
Fusion	Breast	B4GALT1--AQP7	HLA-A02:05	LLGAHMNAAV	0.9919	0.8706	0.5195	116.8	0.7496	NA	1/787	1/4234
Fusion	Breast	B4GALT1--AQP7	HLA-A02:05	LLGAHMNAA	0.9636	0.7901	0.4409	265.4	1.5226	NA	1/787	1/4234
Fusion	Breast	TBC1D13--ODF2	HLA-B27:05	NRLLLLLQDK	0.9997	0.7724	1.3493	67.1	0.223	NA	1/787	1/4234
Fusion	Breast	TBC1D13--ODF2	HLA-B27:05	RNRSGVTNRL	0.9384	0.7072	1.7204	176.2	0.5594	NA	1/787	1/4234
Fusion	Breast	UBE2F--RAMP1	HLA-A02:05	QVLPGSAWPL	0.9613	0.6715	0.5245	362.1	1.932	NA	1/787	1/4234
Fusion	Breast	UBE2F--RAMP1	HLA-A02:05	VLPGSAWPLL	0.9635	0.7238	0.5279	367.5	1.9549	NA	1/787	1/4234
Fusion	Breast	UBE2F--RAMP1	HLA-B27:05	ARQHPLPLHR	0.9998	0.551	0.3057	209.1	0.6443	NA	1/787	1/4234
Fusion	Breast	UBE2F--RAMP1	HLA-B27:05	LRQGRAGPAR	0.9989	0.528	1.1	489.5	1.2264	NA	1/787	1/4234
Fusion	Breast	UBE2F--RAMP1	HLA-A02:05	VLPGSAWPL	0.9736	0.8388	0.1641	45.1	0.2975	NA	1/787	1/4234
Fusion	Breast	UBE2F--RAMP1	HLA-B27:05	RQHPLPLHR	0.9977	0.7137	0.0658	455.9	1.1626	NA	1/787	1/4234
Fusion	Breast	DHDDS--PSMB2	HLA-B42:01	IIKIMTRCL	0.8959	0.6327	1.418	390.4	1.0536	NA	1/787	1/4234
Fusion	Breast	RTF1--SNX24	HLA-C12:03	QVFKIEVLM	0.928	0.9888	1.3695	400.9	1.3411	NA	1/787	1/4234
Fusion	Breast	FIP1L1--SBNO2	HLA-B53:01	MAPGSWSGW	0.959	0.8124	0.3235	115.8	0.1399	NA	1/787	1/4234
Fusion	Breast	MUS81--C11orf80	HLA-C07:01	HRGDASSAL	0.9847	0.6574	0.5181	457.1	0.1563	NA	1/787	1/4234
Fusion	Breast	PIP5K1C--PALM	HLA-A74:01	WSMLWTAPPR	0.9578	0.9231	1.6082	418.5	0.1947	NA	1/787	1/4234
Fusion	Breast	PIP5K1C--PALM	HLA-B53:01	RPDDYLWSMLW	0.9812	0.7511	0.2868	410.3	0.4073	NA	1/787	1/4234
Fusion	Breast	PIP5K1C--PALM	HLA-A74:01	SMLWTAPPR	0.9721	0.9002	0.2227	195	0.0814	NA	1/787	1/4234
Fusion	Breast	SUCO--ZCWPW2	HLA-B08:01	EQLARNTL	0.9974	0.7609	0.3925	448.2	0.7004	NA	1/787	1/4234
Fusion	Breast	CPD--TBX2	HLA-C03:04	TLIEKGIPM	0.9832	0.9849	0.1775	127.5	0.4231	NA	1/787	1/4234
Fusion	Breast	EIF2AK2--STRN	HLA-C03:04	YMSPEQAQI	0.9575	0.9838	0.7945	170.5	0.5061	NA	1/787	1/4234
Fusion	Breast	ZNF773--PPP2R1A	HLA-C07:01	LRDPAQLRL	0.9967	0.8307	0.1317	339.7	0.122	NA	1/787	1/4234
Fusion	Breast	ASL--GUSB	HLA-B44:03	SEAPYVDVI	0.9816	0.7792	0.0686	243.9	0.2519	NA	1/787	1/4234
Fusion	Breast	C2CD5--LGALS9B	HLA-B42:01	APLDRCSLRL	0.8616	0.7803	0.4096	104.1	0.4559	NA	1/787	1/4234
Fusion	Breast	C2CD5--LGALS9B	HLA-B42:01	LPACGLPTQL	0.7121	0.7717	0.3866	30.5	0.154	NA	1/787	1/4234
Fusion	Breast	C2CD5--LGALS9B	HLA-B42:01	APLDRCSL	0.9933	0.7452	0.3217	92.9	0.4196	NA	1/787	1/4234
Fusion	Breast	C2CD5--LGALS9B	HLA-B42:01	LPLPRQSST	0.9553	0.548	0.5868	138.3	0.5604	NA	1/787	1/4234
Fusion	Breast	HYI--NFIA	HLA-B35:01	LPIVGHLGF	0.9982	0.7596	0.0187	8.2	0.0277	NA	1/787	1/4234
Fusion	Breast	PPM1E--SPAG5	HLA-A02:02	MLFNLEQSWV	0.9965	0.5546	0.241	8.2	0.1359	NA	1/787	1/4234
Fusion	Breast	PPM1E--SPAG5	HLA-A02:02	MLFNLEQSWVL	0.9925	0.6279	0.6818	14.2	0.3272	NA	1/787	1/4234
Fusion	Breast	PRDX1--TMEM53	HLA-A02:02	GLLHGLLLAA	0.9946	0.5867	0.2138	97.2	1.8186	NA	1/787	1/4234
Fusion	Breast	PRDX1--TMEM53	HLA-A02:02	GLLHGLLLA	0.9884	0.5908	0.241	69.6	1.4254	NA	1/787	1/4234
Fusion	Breast	SPAG5--SLC47A1	HLA-B35:01	MALRGKDAF	0.932	0.7658	0.4563	20.2	0.0828	NA	1/787	1/4234
Fusion	Breast	TOM1L1--TMEM11	HLA-B42:01	APAVTTEVSL	0.8025	0.5813	0.1855	26.3	0.1264	NA	1/787	1/4234
Fusion	Breast	TBC1D4--COMMD6	HLA-C07:02	FRATDPSQL	0.8585	0.9446	0.1072	139.1	0.077	NA	1/787	1/4234
Fusion	Breast	LRPPRC--CYTIP	HLA-B15:03	QQWQFGGLL	0.5118	0.9199	1.1056	19.9	0.3593	NA	1/787	1/4234
Fusion	Breast	LRPPRC--CYTIP	HLA-B15:03	WQFGGLLRW	0.6825	0.9873	0.276	22.2	0.3988	NA	1/787	1/4234
Fusion	Breast	MED25--MAPK15	HLA-A68:02	FAYGIVWKAV	0.9791	0.7653	0.4916	18.7	0.1504	NA	1/787	1/4234
Fusion	Breast	MED25--MAPK15	HLA-B15:03	YRIMGNGFAY	0.9525	0.7664	0.3529	16.5	0.2933	NA	1/787	1/4234
Fusion	Breast	MED25--MAPK15	HLA-B15:03	IMGNGFAY	0.9144	0.7725	1.3205	96	1.384	NA	1/787	1/4234
Fusion	Breast	MED25--MAPK15	HLA-A68:02	FAYGIVWKA	0.9855	0.5722	0.0356	15.6	0.1212	NA	1/787	1/4234
Fusion	Breast	MED25--MAPK15	HLA-B15:03	RIMGNGFAY	0.9086	0.7535	0.0412	12.2	0.1981	NA	1/787	1/4234
Fusion	Breast	STK11--SMARCD2	HLA-A68:01	LAPHLVQQLR	0.8347	0.753	0.9574	117.1	1.0049	NA	1/787	1/4234
Fusion	Breast	CAMK1D--MINDY3	HLA-A02:01	MQLAPVVQNL	0.9238	0.5851	1.9339	73.8	0.8586	NA	1/787	1/4234
Fusion	Breast	CAMK1D--MINDY3	HLA-A02:01	YLVMQLAPVV	0.9919	0.7246	0.7767	9.3	0.1074	NA	1/787	1/4234
Fusion	Breast	CAMK1D--MINDY3	HLA-B42:01	APVVQNLL	0.7277	0.5234	0.6408	379.6	1.0365	NA	1/787	1/4234
Fusion	Breast	CAMK1D--MINDY3	HLA-A02:01	LVMQLAPVV	0.9598	0.5902	0.4409	130.2	1.2547	NA	1/787	1/4234
Fusion	Breast	CAMK1D--MINDY3	HLA-A02:01	QLAPVVQNL	0.993	0.7245	0.0177	52.5	0.6564	NA	1/787	1/4234
Fusion	Breast	CAMK1D--MINDY3	HLA-A02:01	YLVMQLAPV	0.9935	0.7734	0.1807	2.7	0.0083	NA	1/787	1/4234
Fusion	Breast	CAMK1D--MINDY3	HLA-C15:02	LVMQLAPVV	0.9966	0.8385	1.0705	330	0.3599	NA	1/787	1/4234
Fusion	Breast	ENPP1--RIPPLY2	HLA-A02:01	SLMPDGPGM	0.9365	0.8304	0.1418	42	0.5435	NA	1/787	1/4234
Fusion	Breast	ENPP1--RIPPLY2	HLA-C15:02	NTYKVLSLM	0.9924	0.7293	0.8065	427.7	0.4579	NA	1/787	1/4234
Fusion	Breast	AGAP1--MATN2	HLA-B44:03	AEAAHMCSTL	0.9745	0.943	0.2793	234.6	0.2442	NA	1/787	1/4234
Fusion	Breast	AGAP1--MATN2	HLA-C03:04	EAAHMCSTL	0.9936	0.9883	0.645	428.6	0.8974	NA	1/787	1/4234
Fusion	Breast	MYO15A--TOP3A	HLA-A02:01	SLDTPVPFVL	0.9812	0.6683	0.3283	89.3	0.9837	NA	1/787	1/4234
Fusion	Breast	MYO15A--TOP3A	HLA-C03:04	FATSLDTPVPF	0.9998	0.9865	1.0655	158.2	0.4836	NA	1/787	1/4234
Fusion	Breast	MYO15A--TOP3A	HLA-A02:01	SLDTPVPFV	0.9962	0.5321	0.0052	10.4	0.1226	NA	1/787	1/4234
Fusion	Breast	MYO15A--TOP3A	HLA-C03:04	FATSLDTPV	0.9847	0.9926	0.6429	9.3	0.0339	NA	1/787	1/4234
Fusion	Breast	MYO15A--TOP3A	HLA-C03:04	TSLDTPVPF	0.9942	0.9826	0.7415	51.8	0.2178	NA	1/787	1/4234
Fusion	Breast	MYO15A--TOP3A	HLA-C16:01	FATSLDTPV	0.8288	0.9794	0.8065	137.4	0.4706	NA	1/787	1/4234
Fusion	Breast	MYO15A--TOP3A	HLA-C16:01	TSLDTPVPF	0.6373	0.9752	0.4902	59.4	0.2006	NA	1/787	1/4234
Fusion	Breast	PLEKHB1--PACS1	HLA-B44:03	AETKDDALLF	0.9989	0.9282	0.1014	57.6	0.0637	NA	1/787	1/4234
Fusion	Breast	CHD8--IMPG1	HLA-A02:06	LTLEKTSAI	0.8621	0.7342	0.4675	131.9	1.3321	NA	1/787	1/4234
Fusion	Breast	CHD8--IMPG1	HLA-C03:04	ASRRPSASL	0.9903	0.9712	0.4698	363.4	0.8077	NA	1/787	1/4234
Fusion	Breast	CHD8--IMPG1	HLA-C03:04	IGSFWIASL	0.9977	0.9912	0.9687	307.1	0.7332	NA	1/787	1/4234
Fusion	Breast	CHD8--IMPG1	HLA-C03:04	LTLEKTSAI	0.9836	0.9871	0.7594	68	0.2748	NA	1/787	1/4234
Fusion	Breast	CHD8--IMPG1	HLA-C03:04	SAIPRSTWI	0.9935	0.9683	0.5328	79.2	0.3096	NA	1/787	1/4234
Fusion	Breast	CHD8--IMPG1	HLA-C15:02	ASRRPSASL	0.9919	0.8678	0.4789	354.1	0.3843	NA	1/787	1/4234
Fusion	Breast	CHD8--IMPG1	HLA-C15:02	LTLEKTSAI	0.9994	0.8878	0.5195	92.9	0.0821	NA	1/787	1/4234
Fusion	Breast	CHD8--IMPG1	HLA-C15:02	SAIPRSTWI	0.9972	0.8665	0.4134	145.8	0.1527	NA	1/787	1/4234
Fusion	Breast	NDC1--YIPF1	HLA-C03:02	QAYFFDAPEM	0.9987	0.981	0.9687	410.9	1.2786	NA	1/787	1/4234
Fusion	Breast	NDC1--YIPF1	HLA-C03:02	YLPFPIIQAY	0.9141	0.9733	0.2868	192.9	0.7495	NA	1/787	1/4234
Fusion	Breast	NDC1--YIPF1	HLA-C03:02	FPIIQAYFF	0.8843	0.9595	1.7432	458.7	1.3791	NA	1/787	1/4234
Fusion	Breast	NDC1--YIPF1	HLA-C03:02	LPFPIIQAY	0.852	0.9713	0.0495	116.4	0.4999	NA	1/787	1/4234
Fusion	Breast	USP10--KIFC3	HLA-C03:02	SSVEIGQAI	0.9772	0.8904	0.6117	62.2	0.3052	NA	1/787	1/4234
Fusion	Breast	CD99L2--CXorf66	HLA-A30:01	ATLVQRGDK	0.8465	0.5337	1.3416	246.5	1.1438	NA	1/787	1/4234
Fusion	Breast	TRPC4AP--TOX2	HLA-A30:01	RALRQTHQPK	0.9895	0.7999	0.7151	11.1	0.0304	NA	1/787	1/4234
Fusion	Breast	TRPC4AP--TOX2	HLA-B57:03	SSPCMPCQAW	0.9322	0.9888	0.6018	198	0.3907	NA	1/787	1/4234
Fusion	Breast	TRPC4AP--TOX2	HLA-A30:01	ALRQTHQPK	0.9922	0.7776	0.3685	13.7	0.0435	NA	1/787	1/4234
Fusion	Breast	TRPC4AP--TOX2	HLA-A30:01	KVRPRALRQ	0.9771	0.8057	1.5887	47.8	0.2505	NA	1/787	1/4234
Fusion	Breast	ARRB1--PICALM	HLA-C16:01	RADGVMRTM	0.9874	0.9848	0.0631	35.8	0.1031	NA	1/787	1/4234
Fusion	Breast	ARRB1--PICALM	HLA-C17:01	RADGVMRTM	0.7489	0.9564	0.057	385.9	0.1016	NA	1/787	1/4234
Fusion	Breast	BCL7C--OTOA	HLA-A02:01	FLDDWNTADI	0.983	0.7528	0.704	19.1	0.2588	NA	1/787	1/4234
Fusion	Breast	BCL7C--OTOA	HLA-A02:01	SLFLDDWNTA	0.9889	0.8855	0.9203	99.1	1.0524	NA	1/787	1/4234
Fusion	Breast	BCL7C--OTOA	HLA-A02:01	FLDDWNTADIL	0.9904	0.7426	0.5619	29.8	0.3992	NA	1/787	1/4234
Fusion	Breast	BCL7C--OTOA	HLA-A02:01	SLFLDDWNT	0.9191	0.901	1.4611	123.9	1.2147	NA	1/787	1/4234
Fusion	Breast	BCL7C--OTOA	HLA-B07:02	SLRQNLGSF	0.925	0.5463	1.8985	460.6	0.7916	NA	1/787	1/4234
Fusion	Breast	CLEC16A--GRIN2A	HLA-A02:01	VLDLRSDVYL	0.9456	0.5814	0.793	185.5	1.5702	NA	1/787	1/4234
Fusion	Breast	CLEC16A--GRIN2A	HLA-B35:01	LPVWSVHPAA	0.9093	0.7651	0.834	356.5	0.7079	NA	1/787	1/4234
Fusion	Breast	CLEC16A--GRIN2A	HLA-A02:01	YLLPVWSVHPA	0.9956	0.6222	1.6929	12.1	0.1446	NA	1/787	1/4234
Fusion	Breast	CLEC16A--GRIN2A	HLA-A02:01	YLLPVWSV	0.9974	0.8262	0.6655	6.2	0.0524	NA	1/787	1/4234
Fusion	Breast	CLEC16A--GRIN2A	HLA-A23:01	VYLLPVWSV	0.7021	0.7693	0.0808	45.6	0.1833	NA	1/787	1/4234
Fusion	Breast	CLEC16A--GRIN2A	HLA-B35:01	LPVWSVHPA	0.9704	0.8207	0.2856	26.2	0.1045	NA	1/787	1/4234
Fusion	Breast	CLEC16A--GRIN2A	HLA-C15:05	RSDVYLLPV	0.9976	0.9719	0.4456	154.6	0.0897	NA	1/787	1/4234
Fusion	Breast	HOOK2--NFIX	HLA-A02:01	KLKDEFHPFI	0.9632	0.863	0.3806	31.4	0.4198	NA	1/787	1/4234
Fusion	Breast	NOMO3--TFAP4	HLA-A02:01	QLADIVATGL	0.9836	0.6892	0.2239	67.7	0.8078	NA	1/787	1/4234
Fusion	Breast	NOMO3--TFAP4	HLA-A02:01	IVATGLANI	0.8795	0.505	1.1277	207	1.6828	NA	1/787	1/4234
Fusion	Breast	NOMO3--TFAP4	HLA-C15:05	LADIVATGL	0.9955	0.9814	0.0697	196.6	0.1173	NA	1/787	1/4234
Fusion	Breast	FOXK1--ZNF671	HLA-B07:02	APALQLPKQAV	0.9994	0.5613	0.4491	393.2	0.7258	NA	1/787	1/4234
Fusion	Breast	FOXK1--ZNF671	HLA-B35:01	LPKQAVWSL	0.9194	0.8934	0.0658	122	0.362	NA	1/787	1/4234
Fusion	Breast	FOXK1--ZNF671	HLA-C07:02	LRMCLYTSL	0.9136	0.9407	0.7594	81.2	0.042	NA	1/787	1/4234
Fusion	Breast	SEC31B--GRID1	HLA-B07:02	RPTGVSFADF	0.9917	0.6643	0.4902	64	0.2083	NA	1/787	1/4234
Fusion	Breast	TCP11L1--SYT9	HLA-C03:02	AILNISVSL	0.9699	0.9229	0.8723	462.3	1.3865	NA	1/787	1/4234
Fusion	Breast	APPBP2--ZNF345	HLA-B07:02	CVRSPTGAA	0.9932	0.5832	1.7839	228.3	0.5141	NA	1/787	1/4234
Fusion	Breast	CYFIP1--ACACA	HLA-A23:01	KYFKAVWAGW	0.9833	0.5046	0.1718	18.6	0.0607	NA	1/787	1/4234
Fusion	Breast	CYFIP1--ACACA	HLA-A23:01	YFKAVWAGW	0.9639	0.5291	0.5454	43.9	0.1787	NA	1/787	1/4234
Fusion	Breast	MED8--SCMH1	HLA-C15:05	STEWPGPLLM	0.9737	0.9569	0.3152	405.6	0.2693	NA	1/787	1/4234
Fusion	Breast	MED8--SCMH1	HLA-C16:01	STEWPGPLLM	0.8662	0.9868	1.0445	499.2	1.373	NA	1/787	1/4234
Fusion	Breast	MED8--SCMH1	HLA-C15:05	ASMHPYQRV	0.9996	0.9253	0.4246	273.1	0.1736	NA	1/787	1/4234
Fusion	Breast	MED8--SCMH1	HLA-C15:05	STEWPGPLL	0.9755	0.9624	0.1596	200.9	0.1204	NA	1/787	1/4234
Fusion	Breast	MED8--SCMH1	HLA-C16:01	LSTEWPGPL	0.7931	0.9886	0.7808	137.3	0.4703	NA	1/787	1/4234
Fusion	Breast	PSMD8--MAP3K10	HLA-C16:01	YFDYNFGVL	0.9846	0.9519	0.1514	358.4	1.0687	NA	1/787	1/4234
Fusion	Breast	PSMD8--MAP3K10	HLA-C16:01	YYFDYNFGV	0.5981	0.9571	1.1855	415	1.2043	NA	1/787	1/4234
Fusion	Breast	TESMIN--COX18	HLA-A74:01	ITLAGLTYLK	0.9443	0.5628	0.4347	265.4	0.1209	NA	1/787	1/4234
Fusion	Breast	TESMIN--COX18	HLA-A74:01	TLAGLTYLK	0.9177	0.7866	0.0686	252.5	0.1141	NA	1/787	1/4234
Fusion	Breast	TESMIN--COX18	HLA-C15:05	ITLAGLTYL	0.9984	0.9413	0.3956	137	0.0787	NA	1/787	1/4234
Fusion	Breast	TESMIN--COX18	HLA-C16:01	ITLAGLTYL	0.8705	0.9836	0.538	41.2	0.1249	NA	1/787	1/4234
Fusion	Breast	COMMD10--CHSY3	HLA-B15:01	KMQQLFHENY	0.9997	0.7404	0.1821	77.1	0.4137	NA	1/787	1/4234
Fusion	Breast	HOOK3--C2CD3	HLA-C03:04	TTNPGLQSL	0.9997	0.9826	0.2253	53.9	0.2255	NA	1/787	1/4234
Fusion	Breast	PGM2L1--PPME1	HLA-C03:03	RSYPSVAM	0.9993	0.993	0.2573	204.5	0.5715	NA	1/787	1/4234
Fusion	Breast	PGM2L1--PPME1	HLA-A02:01	AMQSMRMPL	0.9051	0.6131	1.3108	173.1	1.5045	NA	1/787	1/4234
Fusion	Breast	PGM2L1--PPME1	HLA-B15:01	AMQSMRMPL	0.991	0.8846	1.5385	150.5	0.7369	NA	1/787	1/4234
Fusion	Breast	PGM2L1--PPME1	HLA-C03:03	YPSVAMQSM	0.997	0.9692	1.0341	133.6	0.4361	NA	1/787	1/4234
Fusion	Breast	PGM2L1--PPME1	HLA-C07:02	CRSYPSVAM	0.8654	0.9594	0.637	362.7	0.2399	NA	1/787	1/4234
