Type	Tissue	Mutation	HLA	Peptide	Deep_bind	Deep_imm	MHCf_rank (%)	Net4_aff (nM)	Net4_rank (%)	TPM	Frequency in the tissue	Frequency in all samples
Fusion	Brain	R3HDM2--ATP23	HLA-C16:01	YSDPYVKLLL	0.995	0.9485	0.1014	375.1	1.1012	NA	1/92	1/4234
Fusion	Brain	R3HDM2--ATP23	HLA-C16:01	YSDPYVKLL	0.9853	0.9591	0.0073	47.1	0.1457	NA	1/92	1/4234
Fusion	Brain	GSAP--STYXL1	HLA-B18:01	DESYNLMEL	0.983	0.9427	0.5941	120	0.0833	NA	1/92	1/4234
Fusion	Brain	GSAP--STYXL1	HLA-B18:01	MELDAFQPY	0.9983	0.7834	0.4263	6.8	0.0071	NA	1/92	1/4234
Fusion	Brain	TSFM--OS9	HLA-C07:01	RRLGQHVFL	0.999	0.8458	0.1014	137.2	0.0541	NA	1/92	1/4234
Fusion	Brain	SLC35E3--OS9	HLA-A02:01	ALFLCDEGA	0.9184	0.6629	1.1501	153.2	1.4014	NA	1/92	1/4234
Fusion	Brain	SLC35E3--OS9	HLA-B35:01	GPWSVSALF	0.9881	0.8686	0.5128	72.1	0.251	NA	1/92	1/4234
Fusion	Brain	TSFM--GLI1	HLA-A02:01	FLLPGVQSS	0.9633	0.5806	0.7494	56.5	0.6956	NA	1/92	1/4234
Fusion	Brain	TSFM--GLI1	HLA-B35:01	SAYSKAHSF	0.9954	0.8159	0.024	79.3	0.2707	NA	1/92	1/4234
Fusion	Brain	TSFM--GLI1	HLA-C07:01	YSKAHSFLL	0.9464	0.8287	0.9595	428.8	0.1475	NA	1/92	1/4234
Fusion	Brain	YEATS4--ATP23	HLA-B35:01	GAYKHETEY	0.9822	0.8838	0.1963	140.3	0.3921	NA	1/92	1/4234
Fusion	Brain	YEATS4--ATP23	HLA-B35:01	YKHETEYPY	0.8006	0.9528	1.9404	371.3	0.7279	NA	1/92	1/4234
Fusion	Brain	MTF1--SF3A3	HLA-C07:01	KRKERYMEV	0.8538	0.8221	0.5399	393.7	0.1381	NA	1/92	1/4234
Fusion	Brain	RBMS2--LITAF	HLA-B35:01	HPMKRQWLL	0.9847	0.7145	0.1072	107.7	0.3352	NA	1/92	1/4234
Fusion	Brain	MEIS2--ZNF143	HLA-B27:05	MRAWLFQHLTI	0.9999	0.7634	1.9682	221.4	0.6773	NA	1/92	1/4234
Fusion	Brain	OS9--C12orf66	HLA-C03:04	ISPPNPQSF	0.9975	0.9701	0.2793	450.4	0.9343	NA	1/92	1/4234
Fusion	Brain	OS9--CPSF6	HLA-B40:01	REAEYGGHDQI	0.9995	0.6425	0.1098	425	0.6353	NA	1/92	1/4234
Fusion	Brain	R3HDM2--PIP4K2C	HLA-A02:01	GLWSSKKYPV	0.9839	0.6909	0.8492	27.8	0.3771	NA	1/92	1/4234
Fusion	Brain	R3HDM2--PIP4K2C	HLA-A02:01	VMVASLSPT	0.9379	0.538	1.0891	218.2	1.7388	NA	1/92	1/4234
Fusion	Brain	R3HDM2--PIP4K2C	HLA-A02:01	YLNDIRCPL	0.9953	0.5588	0.0861	9.6	0.1122	NA	1/92	1/4234
Fusion	Brain	R3HDM2--PIP4K2C	HLA-C02:02	MVASLSPTI	0.8481	0.9754	0.8655	194.2	0.1063	NA	1/92	1/4234
Fusion	Brain	R3HDM2--PIP4K2C	HLA-C02:02	YLNDIRCPL	0.9094	0.8863	0.4113	125.8	0.0559	NA	1/92	1/4234
Fusion	Brain	R3HDM2--PIP4K2C	HLA-C03:04	ASLSPTIGL	0.9992	0.9826	0.3657	235.9	0.6253	NA	1/92	1/4234
Fusion	Brain	R3HDM2--PIP4K2C	HLA-C03:04	MVASLSPTI	0.9859	0.9852	0.8562	31.4	0.1424	NA	1/92	1/4234
Fusion	Brain	R3HDM2--PIP4K2C	HLA-C03:04	TSPTITSTL	0.9977	0.9846	0.2557	315.5	0.7449	NA	1/92	1/4234
Fusion	Brain	R3HDM2--PIP4K2C	HLA-C03:04	YLNDIRCPL	0.9896	0.9858	0.3542	36.5	0.1658	NA	1/92	1/4234
Fusion	Brain	RHOT1--ASIC2	HLA-A02:01	KIWEVLHV	0.9971	0.8476	0.4078	182.1	1.5525	NA	1/92	1/4234
Fusion	Brain	RHOT1--ASIC2	HLA-C03:04	RVYKIWEVL	0.988	0.9957	0.7456	419.9	0.8862	NA	1/92	1/4234
Fusion	Brain	IMMP2L--DYNC1I1	HLA-B35:01	NSFGPSSVM	0.9833	0.8685	0.6352	148.6	0.406	NA	1/92	1/4234
Fusion	Brain	IMMP2L--DYNC1I1	HLA-C12:03	FGPSSVMSV	0.8859	0.9928	0.356	77.8	0.362	NA	1/92	1/4234
Fusion	Brain	IMMP2L--DYNC1I1	HLA-C12:03	NSFGPSSVM	0.9778	0.9815	0.3685	24.5	0.0943	NA	1/92	1/4234
Fusion	Brain	HMGA2--NUP107	HLA-B07:02	RPRKWDPDAPI	0.9998	0.7237	0.5231	19	0.0658	NA	1/92	1/4234
Fusion	Brain	HMGA2--NUP107	HLA-B07:02	RPRKWDPDA	0.9934	0.6625	0.348	131.5	0.3593	NA	1/92	1/4234
Fusion	Brain	PGD--CAMTA1	HLA-B44:02	AETHVPWHQV	0.8611	0.6951	0.4113	210.7	0.236	NA	1/92	1/4234
Fusion	Brain	PGD--CAMTA1	HLA-B44:02	QQEESEIQERW	0.9998	0.6933	0.2727	160.1	0.189	NA	1/92	1/4234
Fusion	Brain	PGD--CAMTA1	HLA-B08:01	ALRPHPLL	0.9969	0.5457	0.6333	467.4	0.7259	NA	1/92	1/4234
Fusion	Brain	PGD--CAMTA1	HLA-B08:01	EIQERWVL	0.9988	0.8019	0.1625	179.7	0.3181	NA	1/92	1/4234
Fusion	Brain	PGD--CAMTA1	HLA-B08:01	QALRPHPL	0.9988	0.6217	1.8454	161.8	0.2868	NA	1/92	1/4234
Fusion	Brain	PGD--CAMTA1	HLA-A11:01	GTAGAADPR	0.9752	0.5162	0.8108	224.4	1.0821	NA	1/92	1/4234
Fusion	Brain	PGD--CAMTA1	HLA-B08:01	CPFLHHPHL	0.9832	0.6674	0.5741	186.1	0.3301	NA	1/92	1/4234
Fusion	Brain	PGD--CAMTA1	HLA-B08:01	EIQERWVLL	0.9735	0.8072	0.148	468.2	0.7269	NA	1/92	1/4234
Fusion	Brain	PGD--CAMTA1	HLA-B08:01	RQALRPHPL	0.9712	0.6077	0.5365	148.4	0.2653	NA	1/92	1/4234
Fusion	Brain	PGD--CAMTA1	HLA-C07:01	HRQEGVGEM	0.9986	0.7126	0.4367	198.7	0.0755	NA	1/92	1/4234
Fusion	Brain	CHMP1A--SPIRE2	HLA-B27:02	RRLPWLKW	0.9998	0.6758	0.5094	431	0.1656	NA	1/92	1/4234
Fusion	Brain	CHMP1A--SPIRE2	HLA-C02:02	VTMKGGLAL	0.9684	0.9699	0.1182	350.6	0.2204	NA	1/92	1/4234
Fusion	Brain	CHMP1A--SPIRE2	HLA-C12:03	VTMKGGLAL	0.9972	0.9787	0.0932	28.8	0.1146	NA	1/92	1/4234
Fusion	Brain	DCTD--ECE2	HLA-A68:01	HHSAPGPAAR	0.7508	0.9432	1.2828	29.4	0.3603	NA	1/92	1/4234
Fusion	Brain	DCTD--ECE2	HLA-A68:01	HSAPGPAARR	0.9965	0.8848	0.241	13.3	0.1488	NA	1/92	1/4234
Fusion	Brain	DCTD--ECE2	HLA-A68:01	HSAPGPAAR	0.9985	0.928	0.2825	9.7	0.0907	NA	1/92	1/4234
Fusion	Brain	DCTD--ECE2	HLA-A68:01	SAPGPAARR	0.9709	0.8815	0.296	49.2	0.5388	NA	1/92	1/4234
Fusion	Brain	DCTD--ECE2	HLA-C05:01	GADAAGAGV	0.9997	0.9793	0.3461	222.2	0.1002	NA	1/92	1/4234
Fusion	Brain	ATAD1--KCNMA1	HLA-B15:01	AQKQVVLVF	0.9997	0.7372	0.0037	8.1	0.0102	NA	1/92	1/4234
Fusion	Brain	ATAD1--KCNMA1	HLA-B15:01	KQVVLVFAL	0.9669	0.8342	0.7286	187.5	0.8699	NA	1/92	1/4234
Fusion	Brain	MTMR2--DPM1	HLA-B53:01	NIICGSCLW	0.9208	0.5569	1.6177	197.6	0.2249	NA	1/92	1/4234
Fusion	Brain	LRP1--XPO5	HLA-A02:01	SLHRLLMEEV	0.9309	0.6462	1.5707	67.8	0.8087	NA	1/92	1/4234
Fusion	Brain	LRP1--XPO5	HLA-C03:04	ISLSLHRLL	0.9967	0.9792	0.4048	366.4	0.8121	NA	1/92	1/4234
Fusion	Brain	FAM219A--POLN	HLA-A11:01	SSYCPVSPDR	0.9938	0.5246	1.671	35.6	0.216	NA	1/92	1/4234
Fusion	Brain	FAM219A--POLN	HLA-B15:17	SSYSGSCPVF	0.9958	0.839	0.4078	7.5	0.0842	NA	1/92	1/4234
Fusion	Brain	FAM219A--POLN	HLA-B15:17	GSCPVFGEF	0.9887	0.8815	0.2268	75.3	1.0307	NA	1/92	1/4234
Fusion	Brain	FAM219A--POLN	HLA-B15:17	SSYSGSCPV	0.8205	0.9175	1.6023	98.2	1.227	NA	1/92	1/4234
Fusion	Brain	PXDN--TRIP12	HLA-C07:01	KRPKRVYSM	0.9982	0.5865	0.1514	231.3	0.0857	NA	1/92	1/4234
Fusion	Brain	ZNF689--ZNF48	HLA-B35:01	QVIHTGAEF	0.9669	0.9081	0.0875	162	0.4308	NA	1/92	1/4234
Fusion	Brain	ATG5--PDSS2	HLA-A33:01	EVARKNQSWQR	0.9861	0.8014	0.2054	277.6	0.595	NA	1/92	1/4234
Fusion	Brain	TDRD3--ESD	HLA-C12:03	WGYDHSYYF	0.6055	0.9688	0.4902	24.7	0.0955	NA	1/92	1/4234
Fusion	Brain	AKAP11--MRPS31	HLA-C12:03	SSFHHLSERF	0.9955	0.9687	0.4825	374.6	1.2803	NA	1/92	1/4234
Fusion	Brain	PIP4K2C--DCTN2	HLA-C12:03	LSNYHQEEL	0.9818	0.9755	0.5435	237.5	0.9307	NA	1/92	1/4234
Fusion	Brain	POLR2A--ASAP2	HLA-C12:03	LALDVDRMVL	0.9959	0.9867	0.2268	482.8	1.5137	NA	1/92	1/4234
Fusion	Brain	TCEA1--ALKAL1	HLA-C12:03	MTLELLQKY	0.5063	0.9651	0.0995	160	0.6814	NA	1/92	1/4234
Fusion	Brain	TSPAN31--AVIL	HLA-C16:04	FSFTENYL	0.999	0.9873	0.3168	458	1.0892	NA	1/92	1/4234
Fusion	Brain	LRP5--ATG16L2	HLA-B15:02	TLYPPGAPL	0.95	0.989	0.3542	192.5	0.3238	NA	1/92	1/4234
Fusion	Brain	GIGYF2--NGEF	HLA-C12:03	GAHHLPLPL	0.9777	0.9931	0.2825	86.1	0.3925	NA	1/92	1/4234
Fusion	Brain	CCDC127--TERT	HLA-A02:01	MLGLAAFRV	0.9863	0.7394	0.2557	17.3	0.2244	NA	1/92	1/4234
Fusion	Brain	DSTN--CCDC127	HLA-A68:01	MVGFGLGSPR	0.9931	0.501	0.3639	5.8	0.0366	NA	1/92	1/4234
Fusion	Brain	DSTN--CCDC127	HLA-A68:01	VGFGLGSPR	0.9323	0.8471	0.2856	110	0.9655	NA	1/92	1/4234
Fusion	Brain	SKI--SSU72	HLA-A30:01	RVPRQTGIQR	0.928	0.7422	0.7767	226.3	1.0634	NA	1/92	1/4234
Fusion	Brain	SKI--SSU72	HLA-A30:01	ASRTSSRQA	0.9287	0.7643	1.8266	15.6	0.0515	NA	1/92	1/4234
Fusion	Brain	NR2F2--DCC	HLA-C15:02	LTDTWGGEV	0.9492	0.9692	1.0524	272.4	0.2949	NA	1/92	1/4234
Fusion	Brain	RGS6--AKAP6	HLA-A11:01	KIPSVVTGVCK	0.9967	0.5496	0.1285	335.8	1.4003	NA	1/92	1/4234
Fusion	Brain	RGS6--AKAP6	HLA-A02:01	KIPSVVTGV	0.9524	0.5954	0.0201	77.3	0.8865	NA	1/92	1/4234
Fusion	Brain	CEP85L--ROS1	HLA-C03:04	LVTTVQSTL	0.9976	0.9817	0.5741	90.2	0.3396	NA	1/92	1/4234
Fusion	Brain	ATR--PHF14	HLA-B44:02	ADSATILAVW	0.9916	0.8783	0.3075	154.2	0.1828	NA	1/92	1/4234
Fusion	Brain	C12orf49--HSPB8	HLA-B08:01	NMKRNSKKVAL	0.9994	0.6894	1.9476	69	0.12	NA	1/92	1/4234
Fusion	Brain	C12orf49--HSPB8	HLA-A02:01	FLSSTFKQA	0.9842	0.5258	0.1302	78.3	0.8945	NA	1/92	1/4234
Fusion	Brain	C12orf49--HSPB8	HLA-C07:01	KRNSKKVAL	0.9975	0.6619	0.4033	379.8	0.1342	NA	1/92	1/4234
Fusion	Brain	C12orf49--HSPB8	HLA-C07:01	SRNIIQLDL	0.995	0.8252	0.0745	299.2	0.1085	NA	1/92	1/4234
Fusion	Brain	CNOT2--ERBB3	HLA-C07:01	KRNYQSQSL	0.9985	0.7909	0.2896	261.4	0.095	NA	1/92	1/4234
Fusion	Brain	KDM2B--KSR2	HLA-B08:01	YPKVKKASW	0.9071	0.5614	0.6429	246.6	0.4282	NA	1/92	1/4234
Fusion	Brain	RAB3IP--ERBB3	HLA-B08:01	LAKAQRCVL	0.9975	0.5776	0.5741	43.5	0.073	NA	1/92	1/4234
Fusion	Brain	RANBP3--PRM1	HLA-B08:01	NLRDRVKVQM	0.9715	0.5189	0.4382	182.5	0.3234	NA	1/92	1/4234
Fusion	Brain	RANBP3--PRM1	HLA-B08:01	NLRDRVKVQML	0.9953	0.5524	1.1225	329.8	0.5411	NA	1/92	1/4234
Fusion	Brain	RANBP3--PRM1	HLA-A02:01	VLPPQVQTA	0.9563	0.522	0.1947	256.2	1.9288	NA	1/92	1/4234
Fusion	Brain	TMEM120B--AVIL	HLA-C05:01	LQDMKNATL	0.9999	0.9577	0.296	217.3	0.0985	NA	1/92	1/4234
Fusion	Brain	TSFM--IFNG	HLA-A02:01	TVLVESIPV	0.9398	0.5895	1.5614	235.1	1.8215	NA	1/92	1/4234
Fusion	Brain	MAP3K13--CD37	HLA-B08:01	AALLRLAL	0.9998	0.9091	0.1039	60.3	0.1079	NA	1/92	1/4234
Fusion	Brain	MAP3K13--CD37	HLA-B55:01	GPVFWDAAA	0.6646	0.9016	0.4213	447.1	0.1699	NA	1/92	1/4234
Fusion	Brain	MAP3K13--CD37	HLA-C07:01	LRLALPAGL	0.9958	0.8368	0.5002	203.2	0.0771	NA	1/92	1/4234
Fusion	Brain	MAP3K13--CD37	HLA-C07:02	LRLALPAGL	0.8834	0.9718	0.7058	279.7	0.1838	NA	1/92	1/4234
Fusion	Brain	SMAD4--CPLX4	HLA-C07:01	HRDMHVSPVL	0.9949	0.536	0.6692	355	0.1267	NA	1/92	1/4234
Fusion	Brain	SMAD4--CPLX4	HLA-C07:01	HRDMHVSPV	0.9306	0.5678	0.9993	437.6	0.1497	NA	1/92	1/4234
Fusion	Brain	SDC4--SPCS1	HLA-B44:03	AESDYKGQKL	0.9985	0.7219	0.1609	279.5	0.284	NA	1/92	1/4234
Fusion	Brain	CYTH3--RAB40B	HLA-A33:03	YSAPTPGAHR	0.9914	0.5474	0.2636	272.8	0.8126	NA	1/92	1/4234
Fusion	Brain	CYTH3--RAB40B	HLA-A68:01	YSAPTPGAHR	0.9983	0.6952	0.1566	17.1	0.2107	NA	1/92	1/4234
Fusion	Brain	CYTH3--RAB40B	HLA-A68:01	SAPTPGAHR	0.983	0.5485	0.2712	178.1	1.279	NA	1/92	1/4234
Fusion	Brain	NF1--RAB11FIP4	HLA-B07:02	RAARSQAPPL	0.9894	0.7103	1.5203	139	0.3719	NA	1/92	2/4234
Fusion	Brain	NF1--RAB11FIP4	HLA-C16:01	RAARSQAPPL	0.9416	0.9854	1.8708	457.7	1.2971	NA	1/92	1/4234
Fusion	Brain	NF1--RAB11FIP4	HLA-B07:02	AARSQAPPL	0.9989	0.7233	0.4698	47.5	0.1664	NA	1/92	2/4234
Fusion	Brain	NF1--RAB11FIP4	HLA-C07:02	ARSQAPPLL	0.82	0.9804	0.2197	291.6	0.192	NA	1/92	2/4234
Fusion	Brain	NF1--RAB11FIP4	HLA-C16:01	AARSQAPPL	0.6725	0.9855	0.4808	69.5	0.2413	NA	1/92	1/4234
Fusion	Brain	NF1--RAB11FIP4	HLA-C16:01	RSQAPPLLM	0.9143	0.9834	0.2287	46.3	0.1429	NA	1/92	1/4234
Fusion	Brain	NF1--RAB11FIP4	HLA-C16:01	SSSPGNPAF	0.6962	0.9671	0.3152	40.9	0.1237	NA	1/92	1/4234
Fusion	Brain	FMNL3--TUBA1B	HLA-C03:04	FALVLRECI	0.9918	0.9904	0.4883	305.9	0.7315	NA	1/92	1/4234
Fusion	Brain	JAGN1--ZC3H4	HLA-B40:01	REAAAWAGA	0.8528	0.9106	1.0757	420.4	0.6315	NA	1/92	1/4234
Fusion	Brain	JAGN1--ZC3H4	HLA-C03:04	AAEAGAEAL	0.9948	0.9901	0.0822	288.4	0.706	NA	1/92	1/4234
Fusion	Brain	JAGN1--ZC3H4	HLA-C03:04	RSQWETTTM	0.9945	0.9953	0.3529	160.4	0.4875	NA	1/92	1/4234
Fusion	Brain	GDI1--TBC1D8	HLA-A02:01	FLMANGALPC	0.9715	0.6766	1.5614	80.3	0.9105	NA	1/92	1/4234
Fusion	Brain	ADGRB2--HS3ST4	HLA-C12:03	FTTEMRYEM	0.9904	0.9824	0.348	35.1	0.1471	NA	1/92	1/4234
Fusion	Brain	SCAF1--TRAPPC6A	HLA-C03:03	CAAPSIPWAL	0.9991	0.9934	0.3866	403.5	0.8645	NA	1/92	1/4234
Fusion	Brain	SCAF1--TRAPPC6A	HLA-A11:01	WMSSSSCAK	0.9048	0.5306	1.192	162.4	0.8704	NA	1/92	1/4234
Fusion	Brain	SCAF1--TRAPPC6A	HLA-A24:02	RWPLACSIW	0.9464	0.5299	0.5195	70.5	0.1545	NA	1/92	1/4234
Fusion	Brain	SCAF1--TRAPPC6A	HLA-C03:03	AAPSIPWAL	0.9966	0.9883	0.2653	235.4	0.6246	NA	1/92	1/4234
Fusion	Brain	SCAF1--TRAPPC6A	HLA-C03:03	AASCAAPSI	0.993	0.9847	0.68	84.3	0.3239	NA	1/92	1/4234
Fusion	Brain	TESK1--LARGE1	HLA-A03:01	KSWAWWRTR	0.7754	0.5522	0.4113	379.6	1.004	NA	1/92	1/4234
Fusion	Brain	TESK1--LARGE1	HLA-C07:02	WRTRVTGTL	0.8798	0.9325	1.0547	195.6	0.1262	NA	1/92	1/4234
Fusion	Brain	NELL2--OS9	HLA-A32:01	KAFLFQVPL	0.956	0.9893	0.2841	18.9	0.0317	NA	1/92	1/4234
Fusion	Brain	DENND3--PTK2	HLA-A02:01	HLIEMAQKL	0.9977	0.5161	0.0383	62.5	0.7577	NA	1/92	1/4234
Fusion	Brain	ZSWIM4--UBQLN4	HLA-C12:03	LGMFNSPEM	0.9237	0.9843	1.063	99.7	0.448	NA	1/92	1/4234
Fusion	Brain	ZSWIM4--UBQLN4	HLA-C16:01	LGMFNSPEM	0.8998	0.9746	0.721	36.4	0.1058	NA	1/92	1/4234
Fusion	Brain	NR3C1--HMHB1	HLA-C16:04	RAVEGSLHV	0.9656	0.9856	0.2778	92.2	0.2688	NA	1/92	1/4234
Fusion	Brain	EPS15--C1orf185	HLA-C15:02	LSLTQVFLI	0.9972	0.6056	0.7494	224.8	0.2442	NA	1/92	1/4234
Fusion	Brain	FGFR3--TACC3	HLA-A03:01	RVLTVTSTDVK	0.9992	0.5248	0.3057	82.4	0.3096	NA	1/92	2/4234
Fusion	Brain	RHOJ--C6orf52	HLA-C07:01	HYADPHLHL	0.8327	0.747	0.0808	347.8	0.1245	NA	1/92	1/4234
Fusion	Brain	FOCAD--MOB3B	HLA-C03:04	FSGSLSTSI	0.9882	0.9889	0.6854	69.1	0.2783	NA	1/92	1/4234
Fusion	Brain	FOCAD--MOB3B	HLA-C03:04	ISTTSTGSL	0.9952	0.9826	0.6949	97.2	0.3566	NA	1/92	1/4234
Fusion	Brain	NUDT2--GLIPR2	HLA-B58:01	KGHFTAMVW	0.998	0.9933	0.1821	24.6	0.1646	NA	1/92	1/4234
Fusion	Brain	RPS6KC1--LYST	HLA-B58:01	RNGDSNTSLW	0.988	0.8305	0.7356	282.2	0.999	NA	1/92	1/4234
Fusion	Brain	RPS6KC1--LYST	HLA-C07:01	RRNLHHMGF	0.9966	0.6418	0.1014	94.2	0.0356	NA	1/92	1/4234
Fusion	Brain	DBF4--GLUL	HLA-A02:01	CLPSGNFRL	0.8081	0.8434	0.897	229.5	1.7924	NA	1/92	1/4234
Fusion	Brain	DBF4--GLUL	HLA-A32:01	SAWEIISGW	0.9794	0.9118	0.0631	112.1	0.1917	NA	1/92	1/4234
Fusion	Brain	MEF2D--ZDHHC5	HLA-A02:01	SLSNLMCPGL	0.9347	0.7049	0.8024	126.3	1.23	NA	1/92	1/4234
Fusion	Brain	MEF2D--ZDHHC5	HLA-A02:01	NLMCPGLSLYV	0.9953	0.5769	1.0116	27.8	0.3763	NA	1/92	1/4234
Fusion	Brain	MEF2D--ZDHHC5	HLA-A02:01	NLMCPGLSL	0.9716	0.6766	0.3753	92.5	1.0073	NA	1/92	1/4234
Fusion	Brain	MRC2--RND2	HLA-A02:01	ALPELCPHRV	0.9898	0.6821	0.4096	95.3	1.0267	NA	1/92	1/4234
Fusion	Brain	WSB1--MED1	HLA-A32:01	SSWSAALLF	0.9637	0.9172	0.5094	28.5	0.0525	NA	1/92	1/4234
Fusion	Brain	WSB1--MED1	HLA-B18:01	NEKEIGSSW	0.9807	0.8616	0.0465	259.1	0.1748	NA	1/92	1/4234
Fusion	Brain	OTUD7A--ASCC3	HLA-B27:05	RRIYRFASE	0.9958	0.7868	1.3915	203.5	0.6287	NA	1/92	1/4234
Fusion	Brain	AGAP3--CREB5	HLA-B41:01	REHVISIEDL	0.6468	0.6202	0.3184	323.3	0.4599	NA	1/92	1/4234
Fusion	Brain	CHN2--TSPAN33	HLA-B41:01	REHLPPADVL	0.8144	0.9491	0.0583	313	0.4475	NA	1/92	1/4234
Fusion	Brain	CHN2--TSPAN33	HLA-C04:01	RWDPGLRLL	0.9992	0.9678	0.0848	335.4	0.0093	NA	1/92	1/4234
Fusion	Brain	THAP4--ANO7	HLA-A02:01	GLWDTQATT	0.959	0.652	0.8468	140.1	1.316	NA	1/92	1/4234
Fusion	Brain	THAP4--ANO7	HLA-C03:03	TSTPHPSTL	0.9997	0.9905	0.2396	25.2	0.1108	NA	1/92	1/4234
Fusion	Brain	TRPM3--KHDRBS2	HLA-A02:01	AILTALLKV	0.9899	0.5867	0.0154	39.2	0.5101	NA	1/92	1/4234
Fusion	Brain	SHMT2--SLC26A10	HLA-B27:05	RRRKGDFKAR	0.9986	0.6416	0.6891	138.2	0.4557	NA	1/92	1/4234
Fusion	Brain	SHMT2--SLC26A10	HLA-B27:05	RRRRKGDFKA	0.9957	0.7378	1.3768	420.7	1.0925	NA	1/92	1/4234
Fusion	Brain	SHMT2--SLC26A10	HLA-B07:02	APPGPGAL	0.9998	0.5728	0.7172	176.3	0.4343	NA	1/92	1/4234
Fusion	Brain	SHMT2--SLC26A10	HLA-B27:05	RRRKGDFKA	0.9943	0.8151	0.879	427.6	1.1054	NA	1/92	1/4234
Fusion	Brain	SHMT2--SLC26A10	HLA-B27:05	RRRRKGDFK	0.9851	0.857	0.9315	206.2	0.6363	NA	1/92	1/4234
Fusion	Brain	GNB1--OMA1	HLA-C07:02	YYSNSARSIF	0.9432	0.8682	0.348	418.8	0.2753	NA	1/92	1/4234
Fusion	Brain	ITGA9--POPDC2	HLA-B07:02	RPLWLQPTRL	0.9795	0.6074	0.1609	33.9	0.1186	NA	1/92	1/4234
Fusion	Brain	ITGA9--POPDC2	HLA-B07:02	YPGDRPLWL	0.998	0.5332	0.0412	295.7	0.6125	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-A02:01	ASLPGSLTNV	0.9197	0.8185	0.1898	250.2	1.9011	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-A02:01	FLHEDLTVKI	0.9924	0.6915	0.0762	25.1	0.3439	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-A02:01	FMGYSTKPQL	0.9396	0.6047	1.8708	87.4	0.9686	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-A02:01	KIGDFGLATV	0.9954	0.7493	0.0109	36.3	0.4783	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-A02:01	VLYELMTGQL	0.9878	0.6506	1.063	51.4	0.6445	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-A02:01	YAFGIVLYEL	0.9599	0.539	1.205	112.1	1.138	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-B38:01	HHLHIIETKF	0.9949	0.9416	0.0214	446.5	0.0746	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-B38:01	WHGDVAVKML	0.9554	0.9718	0.3199	267.4	0.0422	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-C12:03	YAFGIVLYEL	0.9973	0.9915	0.5279	32.6	0.1336	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-C12:03	YSFQSDVYAF	0.9988	0.9653	0.4737	73.8	0.3459	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-A02:01	FLHEDLTV	0.9926	0.8984	1.1421	70.6	0.8325	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-A02:01	ILWMAPEV	0.9889	0.7687	1.3915	108.7	1.1141	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-C12:03	YAFGIVLY	0.991	0.9766	0.3199	118.5	0.5219	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-C12:03	YSFQSDVY	0.91	0.9537	0.7267	415.2	1.3715	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-A02:01	ILASIELLA	0.9958	0.568	0.4548	46.6	0.5932	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-A02:01	ILWMAPEVI	0.9781	0.5403	0.5962	57	0.7	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-A02:01	KMLNVTAPT	0.9771	0.6277	0.5982	68.5	0.8146	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-A02:01	LLARSLPKI	0.9825	0.6329	0.0658	33.1	0.4409	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-A02:01	SILWMAPEV	0.9761	0.7772	0.2165	25.9	0.3533	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-A02:01	SLPGSLTNV	0.9841	0.8742	0.0187	19.1	0.2583	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-A02:01	WMAPEVIRM	0.9915	0.5761	0.3137	49.7	0.6262	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-A02:01	YLSPDLSKV	0.9992	0.5759	0.0002	5.3	0.0405	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-B38:01	MQDKNPYSF	0.7969	0.904	0.0356	149.9	0.0199	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-B38:01	WHGDVAVKM	0.9903	0.9735	0.051	161.7	0.022	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-C12:03	DVYAFGIVL	0.5089	0.9816	0.5058	370.5	1.2699	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-C12:03	GGYGEFAAF	0.7833	0.9883	0.7554	370.5	1.2699	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-C12:03	HIIETKFEM	0.9991	0.9881	0.2446	206.5	0.8437	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-C12:03	IARQTAQGM	0.8001	0.9868	0.6117	82.4	0.3792	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-C12:03	KTRHVNILL	0.7107	0.97	0.388	339.6	1.1884	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-C12:03	LSATPPASL	0.997	0.9872	0.3974	48.2	0.2099	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-C12:03	MGYSTKPQL	0.9957	0.9711	0.5924	82.3	0.379	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-C12:03	QAFKNEVGV	0.9365	0.9672	1.0807	435.9	1.4151	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-C12:03	SLYHHLHII	0.9116	0.9285	0.4563	268.9	1.0052	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-C12:03	SSLYHHLHI	0.7975	0.9405	0.3514	269.5	1.0069	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-C12:03	STKPQLAIV	0.982	0.9399	0.4951	281.7	1.0406	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-C12:03	VTAPTPQQL	0.9929	0.9651	0.1285	66.5	0.3142	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-C12:03	WMAPEVIRM	0.9983	0.9863	1.5935	109.5	0.4851	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-C12:03	YLSPDLSKV	0.9574	0.9581	0.0671	197.4	0.815	NA	1/92	1/4234
Fusion	Brain	KLHL7--BRAF	HLA-C12:03	YSTKPQLAI	0.9309	0.9201	0.2482	62.9	0.2967	NA	1/92	1/4234
Fusion	Brain	C7orf31--FKBP9	HLA-B15:01	MEKCPAVPY	0.9945	0.7223	0.5999	196.3	0.9	NA	1/92	1/4234
Fusion	Brain	FBXO27--RYR1	HLA-B15:01	GTRPLLTSSF	0.9992	0.7817	1.0418	136	0.6802	NA	1/92	1/4234
Fusion	Brain	FBXO27--RYR1	HLA-B15:01	TSRAWRTVAY	0.9994	0.9172	1.0655	115.8	0.5921	NA	1/92	1/4234
Fusion	Brain	FBXO27--RYR1	HLA-B07:02	VPAPGTSRA	0.9967	0.6403	0.4246	184.3	0.4475	NA	1/92	1/4234
Fusion	Brain	FBXO27--RYR1	HLA-B15:01	CLHISRTTY	0.9992	0.7958	0.2122	42.1	0.2059	NA	1/92	1/4234
Fusion	Brain	FBXO27--RYR1	HLA-B15:01	LSRCSTASL	0.9638	0.8975	1.8072	245.3	1.0647	NA	1/92	1/4234
Fusion	Brain	FBXO27--RYR1	HLA-C03:03	LSRCSTASL	0.9937	0.9908	0.8698	57.5	0.2381	NA	1/92	1/4234
Fusion	Brain	FBXO27--RYR1	HLA-C07:02	HRQGTRPLL	0.87	0.8603	0.241	179.9	0.1139	NA	1/92	1/4234
Fusion	Brain	FBXO27--RYR1	HLA-C07:02	SRAWRTVAY	0.8532	0.9145	0.0166	80.1	0.0411	NA	1/92	1/4234
Fusion	Brain	FBXO27--RYR1	HLA-C07:02	TRPLLTSSF	0.8412	0.8904	0.0452	228.2	0.1498	NA	1/92	1/4234
Fusion	Brain	JAZF1--CPT1C	HLA-A03:01	RMLSAGLLNR	0.9961	0.6888	0.0618	45.4	0.169	NA	1/92	1/4234
Fusion	Brain	JAZF1--CPT1C	HLA-A03:01	RMLSAGLLNRR	0.9917	0.7306	0.1212	459.5	1.1426	NA	1/92	1/4234
Fusion	Brain	JAZF1--CPT1C	HLA-B07:02	TPAPAAAM	0.9997	0.5524	0.4213	90.3	0.2749	NA	1/92	1/4234
Fusion	Brain	JAZF1--CPT1C	HLA-B07:02	GPHTTPAPA	0.9991	0.6871	0.5583	187.8	0.4531	NA	1/92	1/4234
Fusion	Brain	JAZF1--CPT1C	HLA-C03:03	IVHSGYRML	0.9206	0.9044	0.6079	288.6	0.7062	NA	1/92	1/4234
Fusion	Brain	JAZF1--CPT1C	HLA-C03:03	TTPAPAAAM	0.9967	0.9909	0.2054	188.3	0.5417	NA	1/92	1/4234
Fusion	Brain	JAZF1--CPT1C	HLA-C07:02	SRPDPLLHL	0.9755	0.9156	0.0948	146.9	0.0854	NA	1/92	1/4234
Fusion	Brain	JAZF1--CPT1C	HLA-C07:02	YRMLSAGLL	0.8385	0.9595	0.5637	19.9	0.0089	NA	1/92	1/4234
Fusion	Brain	MPLKIP--NLRP11	HLA-B07:02	SPGQQQTHPQL	0.9892	0.5417	0.6252	378.5	0.71	NA	1/92	1/4234
Fusion	Brain	RHPN2--CHN2	HLA-A02:01	LLDSTSSMML	0.9864	0.6667	0.793	115.4	1.1601	NA	1/92	1/4234
Fusion	Brain	RHPN2--CHN2	HLA-B15:01	MMLKNTSLLY	0.9995	0.8858	0.3956	9.3	0.0156	NA	1/92	1/4234
Fusion	Brain	RHPN2--CHN2	HLA-A02:01	SLLDSTSSMML	0.9962	0.77	0.3898	67.4	0.8052	NA	1/92	1/4234
Fusion	Brain	RHPN2--CHN2	HLA-B15:01	LLYGNHTYISY	1	0.8902	0.4698	136.2	0.681	NA	1/92	1/4234
Fusion	Brain	RHPN2--CHN2	HLA-B15:01	SMMLKNTSLLY	0.9988	0.8826	0.7456	55.8	0.2925	NA	1/92	1/4234
Fusion	Brain	RHPN2--CHN2	HLA-B15:01	LLYGNHTY	0.9996	0.8421	1.1651	145.1	0.7167	NA	1/92	1/4234
Fusion	Brain	RHPN2--CHN2	HLA-A02:01	HLVPRESFV	0.9678	0.5637	0.3624	264.9	1.9677	NA	1/92	1/4234
Fusion	Brain	RHPN2--CHN2	HLA-A02:01	MMLKNTSLL	0.9553	0.522	0.2868	30.6	0.41	NA	1/92	1/4234
Fusion	Brain	RHPN2--CHN2	HLA-A02:01	MSFLEAWRV	0.7696	0.5645	1.205	232	1.805	NA	1/92	1/4234
Fusion	Brain	RHPN2--CHN2	HLA-B15:01	MLKNTSLLY	0.9998	0.8618	0.1383	9.6	0.0166	NA	1/92	1/4234
Fusion	Brain	RHPN2--CHN2	HLA-B15:01	MMLKNTSLL	0.9463	0.9138	0.9129	133.5	0.67	NA	1/92	1/4234
Fusion	Brain	RHPN2--CHN2	HLA-B15:01	SLGSRRMSF	0.9129	0.9509	0.7967	138.9	0.6921	NA	1/92	1/4234
Fusion	Brain	RHPN2--CHN2	HLA-B15:01	SLLYGNHTY	0.9863	0.8513	0.0734	103.7	0.5421	NA	1/92	1/4234
Fusion	Brain	RHPN2--CHN2	HLA-B15:01	SMMLKNTSL	0.9756	0.879	0.68	231	1.0178	NA	1/92	1/4234
Fusion	Brain	RHPN2--CHN2	HLA-B15:01	YGNHTYISY	0.987	0.8818	0.4153	131.6	0.6617	NA	1/92	1/4234
Fusion	Brain	RHPN2--CHN2	HLA-C03:03	EAWRVPTSL	0.9996	0.9778	0.1149	134.4	0.4379	NA	1/92	1/4234
Fusion	Brain	RHPN2--CHN2	HLA-C03:03	LLYGNHTYI	0.6674	0.9718	1.584	135.6	0.4405	NA	1/92	1/4234
Fusion	Brain	RHPN2--CHN2	HLA-C03:03	MMLKNTSLL	0.9709	0.9927	1.6471	37.9	0.1716	NA	1/92	1/4234
Fusion	Brain	RHPN2--CHN2	HLA-C03:03	SMMLKNTSL	0.9882	0.9869	0.766	224.2	0.6051	NA	1/92	1/4234
Fusion	Brain	ZNF544--AP2A1	HLA-B07:02	APRGKSKEA	0.9988	0.6336	0.4263	68.5	0.2208	NA	1/92	1/4234
Fusion	Brain	ZNF550--CXCL17	HLA-A02:01	GLSHATCAGV	0.9144	0.5748	0.6572	115.4	1.1598	NA	1/92	1/4234
Fusion	Brain	ZNF263--SUPT6H	HLA-B07:02	GPAPGGNDCSL	0.9999	0.5029	0.4808	156.4	0.3991	NA	1/92	1/4234
Fusion	Brain	FBXL18--WDR83OS	HLA-A30:01	RLRDLRYKP	0.9789	0.8461	1.3205	174.7	0.8428	NA	1/92	1/4234
Fusion	Brain	NEGR1--ZRANB2	HLA-A68:02	DTAVLRCGNV	0.9918	0.6236	1.0266	53.2	0.4451	NA	1/92	1/4234
Fusion	Brain	TDRD3--GLI1	HLA-B07:02	VPPRGPPSL	0.9995	0.6596	0.1734	237.2	0.5286	NA	1/92	1/4234
Fusion	Brain	TDRD3--GLI1	HLA-B42:01	VPPRGPPSL	0.8462	0.6283	0.1775	156.2	0.6105	NA	1/92	1/4234
Fusion	Brain	SMARCA1--PGRMC1	HLA-A02:01	SLLEEMHPGA	0.9881	0.6843	0.7533	26.3	0.3585	NA	1/92	1/4234
Fusion	Brain	SMARCA1--PGRMC1	HLA-A02:01	SLLEEMHPGAL	0.9834	0.684	0.5999	48.5	0.613	NA	1/92	1/4234
